BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007971
(583 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359490377|ref|XP_002263340.2| PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera]
gi|297741051|emb|CBI31782.3| unnamed protein product [Vitis vinifera]
Length = 565
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/570 (65%), Positives = 456/570 (80%), Gaps = 20/570 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKKTLPL+HLQNKRVCIDLSCW+VQLQNVNKS+ DKL+L+GLFHR
Sbjct: 1 MGVKNLWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC L+FV+DGSIPAIKL+TYRRRLNSG+EVT+D+ N + SLRRNMGSEFSC
Sbjct: 61 LRALIALNCSLLFVTDGSIPAIKLATYRRRLNSGTEVTRDETNSHNVPSLRRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN ESLCDGCF+SDSD+FLFGARTVYRDI L
Sbjct: 121 MIKEAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYVVCYEM DIE LGFGRNSLITLALLLGSDYSQGV G GPESACQIVKSVG+ VV
Sbjct: 181 GEGGYVVCYEMADIESTLGFGRNSLITLALLLGSDYSQGVHGFGPESACQIVKSVGEEVV 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L++IA EG+SF K++K S+K+G KCN+KE + E+N+NG++HS QRE F +VIDAY
Sbjct: 241 LKKIALEGISFAKKSKGSRKQGQVLKCNDKENCSDHEMNINGSEHSSQRE--FLRVIDAY 298
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
PKC+SADS+AVHR LA FQ ++CAQ F+WPPEKTDEYILPKIAERDLRRFAN
Sbjct: 299 LKPKCHSADSDAVHRALALLPFQRTEAQKICAQLFEWPPEKTDEYILPKIAERDLRRFAN 358
Query: 361 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 420
LR+ + LG+ PL ++PVKCPI+GIIK RK+QG+ECFEVSWEE GLKSS++PA+L++S
Sbjct: 359 LRSTSSNLGIHFPLHEIPVKCPISGIIKHRKVQGRECFEVSWEEFDGLKSSIIPAELVKS 418
Query: 421 ACPEKIVEFEERRALRQ--------PKKSKPKSSAAEIDQKLQALMLDIESENSTSSNAS 472
ACPEKIVEFE R+ + PKKS ++ AEID++LQ L+LDIES ++ N S
Sbjct: 419 ACPEKIVEFEGRKPQEKKQNHRKPRPKKSNNRTPLAEIDKQLQNLLLDIESGGNSFQNVS 478
Query: 473 FSSRVVMSEDWTAATEIDLTRRQDLLLDAESKS-----NANMSCYPTGSTAAKAEIIDLV 527
FSS + S+ AT+ + Q +LLD ES+S N + C+ G A+ +IDL+
Sbjct: 479 FSSSMTPSKTQIDATKA--AKTQYMLLDTESESDNDNHNEAIICHQNGRCGAEI-VIDLL 535
Query: 528 SPSP-VQCRNVSRIREMSD-QPINTIELSD 555
SPSP ++ R VS+ ++ ++ Q I+ I+LSD
Sbjct: 536 SPSPAIRARKVSKCQQGNNGQQIDVIDLSD 565
>gi|224136982|ref|XP_002322464.1| predicted protein [Populus trichocarpa]
gi|222869460|gb|EEF06591.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/593 (63%), Positives = 439/593 (74%), Gaps = 62/593 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCW+VQLQNVNK++ DK ++R LFH
Sbjct: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLQNVNKTHCGLVKDKPYIRNLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
RLRALIALNC LIFV+DGSIPAIKL+TYRRRLN G EVTQD+ N K SLRRNMGSEFS
Sbjct: 61 RLRALIALNCSLIFVADGSIPAIKLATYRRRLNLGLEVTQDETNSQKACSLRRNMGSEFS 120
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
CMIKEAK +GL+LG+PCL+ +EEAEAQCALLN ESLCDGCFSSDSD+FLFGARTVYRDI
Sbjct: 121 CMIKEAKDIGLALGIPCLDSIEEAEAQCALLNTESLCDGCFSSDSDVFLFGARTVYRDIC 180
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
LGE G+VVCYEM+++ERKLGFGRNSLITLAL+LGSDYS GV GLGPESACQIVKS+GD+
Sbjct: 181 LGE-GHVVCYEMEEVERKLGFGRNSLITLALILGSDYSPGVHGLGPESACQIVKSIGDSN 239
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
VLQ+IASEGL F K+ K SKK+ S K N SL+ EI+ NG + L +T +A
Sbjct: 240 VLQKIASEGLPFAKKIKTSKKQMRSKKTN----SLDSEIHFNG-KYLLCCKTLKCLRQEA 294
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFA 359
+ K DS+A RVL+QH FQ +L +CAQFF WPPEKTDEY LPKIAERDLRRFA
Sbjct: 295 ITIQKGRMTDSDAACRVLSQHPFQRLKLQGICAQFFGWPPEKTDEYTLPKIAERDLRRFA 354
Query: 360 NLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIE 419
NLR+ + LGV+LPLQK+PVKCP++G++K RK+QG ECFEV WE GLK+S+VPADL+E
Sbjct: 355 NLRSTSSELGVNLPLQKIPVKCPVSGVVKQRKVQGTECFEVLWEGFDGLKTSIVPADLLE 414
Query: 420 SACPEKIVEFEERRAL------RQP--KKSKPKSSAAEIDQKLQALMLDIESENSTSSNA 471
SACPEKI EFEE+ AL R+P KKS + + AEID KLQ L+LDIE ++T+ +
Sbjct: 415 SACPEKIAEFEEKTALGKKQNQRKPGSKKSGNRLAMAEIDLKLQTLLLDIEPGSNTACST 474
Query: 472 SFSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP 531
SF + E+IDL SPSP
Sbjct: 475 SF----------------------------------------------QYEVIDLCSPSP 488
Query: 532 V-QCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDIS 583
V + R VSR + ++DQ I+LS+SE E SPE RKARALRMFIASIRDD+S
Sbjct: 489 VARTRTVSRCQRVNDQHSEVIDLSESENEMSPEHARKARALRMFIASIRDDMS 541
>gi|449446177|ref|XP_004140848.1| PREDICTED: flap endonuclease GEN-like 2-like [Cucumis sativus]
Length = 563
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/586 (60%), Positives = 444/586 (75%), Gaps = 32/586 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKKTLPLH LQNKR+CIDLSCWIV+L +V+KS+ K +L+GLF+R
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFYR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LR LIALNC LIFV+DGSIP IKLSTYRRRLN+G+EV Q D N ++ SL+RN GSEFS
Sbjct: 61 LRTLIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEFSL 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKEA+ALGL+LG+PCL+ VEEAEAQCALLN E LCDGCF+SDSD FLFGARTVYRDI L
Sbjct: 121 MIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
G+ G+VVCYEMDDIE +LGFGRNS+IT ALLLGSDYSQGV G+G ESACQ+VK+VGD V
Sbjct: 181 GDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDGAV 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
LQ+I SEGL+ K+ +NSKK+G + +G H + + FS+VIDAY
Sbjct: 241 LQKITSEGLALAKKGENSKKQG---------------LPKSGHGHYMLKCDEFSEVIDAY 285
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
PKC+SADSEAV RVL QH FQH +L Q+CA+FF+W PEKTDE ILPKIAERDLRRFAN
Sbjct: 286 LKPKCHSADSEAVTRVLDQHPFQHVKLQQICAEFFEWSPEKTDENILPKIAERDLRRFAN 345
Query: 361 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 420
+R+ T LG ++PLQ++PV CPI+GI+K RK+QG EC+EVSW ++ GL SVV ADL++
Sbjct: 346 IRSRTSELGFNIPLQEIPVSCPISGIVKHRKVQGNECYEVSW-KNIGLNLSVVSADLLQR 404
Query: 421 ACPEKIVEFEERRA--LRQPK-KSKPKSSA---AEIDQKLQALMLDIESENSTSSNASFS 474
ACPE I+EFEE+RA +Q K K+K K SA AEID++L+ L+L+IESE+ N S
Sbjct: 405 ACPEMIIEFEEKRADGKKQNKGKTKTKKSAAVMAEIDKRLKTLLLEIESESRVVHNISH- 463
Query: 475 SRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-VQ 533
V + T+ T + Q++ L+ E + + + + E+IDL+SPSP +Q
Sbjct: 464 ---VPIDSKTSGTGVH-ELNQEVFLNIEPI----IVDHARSCSTKRIEVIDLLSPSPAIQ 515
Query: 534 CRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 579
RNVS+ ++ + Q I+ I+LSD+E ++SPE ERKAR LR F+AS++
Sbjct: 516 TRNVSKFQQKTSQKIDVIDLSDTEIDQSPEHERKARELRSFLASLK 561
>gi|357498397|ref|XP_003619487.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|355494502|gb|AES75705.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 571
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/596 (60%), Positives = 442/596 (74%), Gaps = 40/596 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKKT+PLHHLQNKRVC+DLSCW+VQLQNV KS+ +K+ LRGLFHR
Sbjct: 1 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVCKSHACLKEKVHLRGLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC ++FVSDGSIPAIKLSTYRRRLN+G EV Q + NL K +SLRRN+GSEFSC
Sbjct: 61 LRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQKETNLQKTTSLRRNLGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI EAK LG++LGV CL G+EEAEAQCALLN ESLCDGCFSSDSDIFLFGARTVYRDI L
Sbjct: 121 MISEAKILGMALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
G+ GYVVCYEM DIERKLGFGR+SLI L+LLLGSDY GV GLGP+SACQIVKS+GD V
Sbjct: 181 GDGGYVVCYEMADIERKLGFGRDSLICLSLLLGSDYYPGVHGLGPDSACQIVKSIGDKFV 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L++ ASEGL +VK+ K G + + R+ QVIDAY
Sbjct: 241 LKKFASEGLGWVKKRK-------------------------GGQNKIGRDDTILQVIDAY 275
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
PKC+SADSE + + LA + FQ +LH +CA F+WP E+TD YILP IAERDLRRFAN
Sbjct: 276 LKPKCHSADSEFLLKALATYPFQRTKLHHICAVSFEWPSERTDGYILPCIAERDLRRFAN 335
Query: 361 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 420
LR + LG++LPL ++PVKCP++ IIKSRK QG+EC+EVSW++ GL++S+VPADLIES
Sbjct: 336 LRLTSSELGLNLPLHEIPVKCPVSEIIKSRKAQGRECYEVSWKDMDGLETSIVPADLIES 395
Query: 421 ACPEKIVEFEERRALRQ--------PKKSKPKSSAAEIDQKLQALMLDIESENSTSSNAS 472
ACPEKI EFEE++ALR+ PKK + SS AE+D KLQ L+LD ++ T+ +AS
Sbjct: 396 ACPEKISEFEEKKALRKKQNVQKRRPKKKETTSSLAELDLKLQNLLLDDNLQDDTNHSAS 455
Query: 473 FSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSN------ANMSCYPTGSTAAKAEIIDL 526
SS ++ E+ T+ E DL +L + + N +N+S S+ K +IDL
Sbjct: 456 DSSGRIL-EETTSTAEDDLNTENMMLSHDDIEYNEWIQNISNISSNDVVSSKDKNVVIDL 514
Query: 527 VSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIRDDI 582
+SPSP++ N S+ SDQ I+ I LSDSE E SPE ++KA+ LRMF+ASIR++I
Sbjct: 515 LSPSPLKPSNSSKFHPSSDQNIDVINLSDSENEVSPEHKQKAKELRMFLASIRNEI 570
>gi|356559829|ref|XP_003548199.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 588
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/603 (59%), Positives = 439/603 (72%), Gaps = 37/603 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWD+LESCKKT+PLHHLQNKRVC+DLSCW+VQL +V+KS+ +K++LRGLFHR
Sbjct: 1 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV--TQDDKNLDKMSSLRRNMGSEF 118
LRALIALNC LIFVSDG+IPAIKLSTYRRRLN G EV Q++ NL K +SL+RNMGSEF
Sbjct: 61 LRALIALNCSLIFVSDGAIPAIKLSTYRRRLNVGKEVQVAQNETNLQKATSLQRNMGSEF 120
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
SCMIKEAK LG++LG+ CL G+EEAEAQCALLN ESLCDGCFSSDSDIFLFGARTVYRDI
Sbjct: 121 SCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDI 180
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
LG+ GYVVCYEM DIERKLGFGR+SLI L+LLLGSDY QGV GLGPESACQIVKS+GD
Sbjct: 181 CLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDK 240
Query: 239 VVLQRIASEGLSFVKRAKN---------SKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
+L++ ASEGL +VK+ K + C N L+
Sbjct: 241 YILKKFASEGLGWVKKRKGIPSILHSNLIILILILYSCKN----------------DLRP 284
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 349
+ QVI+AY PKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP
Sbjct: 285 DDNILQVINAYMKPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTDGYILPN 344
Query: 350 IAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLK 409
IAER+LRRFANLR + +G++LPL ++PVKCP++ IIKSR++QG+EC+EVSWE GL+
Sbjct: 345 IAERNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLE 404
Query: 410 SSVVPADLIESACPEKIVEFEERRAL--------RQPKKSKPKSSAAEIDQKLQALMLDI 461
+S+VPADLIESAC EKI+EFEER+A R+PKK + SS AE+D KLQ L+LDI
Sbjct: 405 TSIVPADLIESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDI 464
Query: 462 ESENSTSSNASFSS-RVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAK 520
+ + NAS SS R+ A +++ T L D E + S+ K
Sbjct: 465 NLRDEANFNASDSSGRISRITTDMAEADLNTTDLLPLSHDIEHTGLIQNTSSEVVSSIDK 524
Query: 521 AEIIDLVSPSPVQCRNV-SRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 579
EIIDL+SPSP + N+ S+ ++ SDQ I I LSDSE + S E ++KA+ LR+F+ASIR
Sbjct: 525 NEIIDLLSPSPPKKSNLFSKCQQSSDQHIEVINLSDSENDMSVERKQKAKELRLFLASIR 584
Query: 580 DDI 582
++I
Sbjct: 585 NEI 587
>gi|255539481|ref|XP_002510805.1| conserved hypothetical protein [Ricinus communis]
gi|223549920|gb|EEF51407.1| conserved hypothetical protein [Ricinus communis]
Length = 586
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 322/519 (62%), Positives = 393/519 (75%), Gaps = 19/519 (3%)
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVT-QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLS 131
+ DGSIPAIKL+TYR+RLNSG EVT QD+ N+ + SL RNMGSEFS MIKEAK LGL+
Sbjct: 73 LIVDGSIPAIKLATYRQRLNSGLEVTTQDETNMKEACSLPRNMGSEFSRMIKEAKILGLA 132
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
LG+ CL+ +EEAEAQCALLN ESLCDGCFSSDSD+FLFGARTVYRDI LG+ G+VVCYEM
Sbjct: 133 LGISCLDSLEEAEAQCALLNSESLCDGCFSSDSDVFLFGARTVYRDICLGDGGHVVCYEM 192
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD+ VLQ+IAS GLSF
Sbjct: 193 ADIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDHNVLQQIASGGLSF 252
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 311
K+ K SKK+ + +S E NVNG+D +R+ F QVIDAY PKC+SADS+
Sbjct: 253 AKKTKASKKQ-------TQLKSFGPESNVNGSDKISERQNQFLQVIDAYLKPKCHSADSD 305
Query: 312 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVD 371
V+RVLAQ FQ A+L Q+CA+FF W E TDEYILPKIAERDLRRF+NLR+ + LGV+
Sbjct: 306 TVYRVLAQPPFQCAKLQQLCARFFGWSSEITDEYILPKIAERDLRRFSNLRSTSSKLGVN 365
Query: 372 LPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 431
L L ++PVKCP++GIIK RK+QG++CFEV WE GL++S+VPADL+ESACPEKI EFEE
Sbjct: 366 LTLHEIPVKCPVSGIIKHRKVQGRKCFEVLWEGFDGLETSIVPADLVESACPEKIAEFEE 425
Query: 432 RRALR--------QPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDW 483
+RALR + KK++ ++ AE+D L+ L+LDIESE++T N SF S SED
Sbjct: 426 KRALRKKQNQRTLKTKKAENITTVAEVDLGLKNLLLDIESESNTVFNDSFPSEASTSEDS 485
Query: 484 TAATEIDLTRRQDLLLDAESK--SNANMSCYPTGSTAAKAEIIDLVSPS-PVQCRNVSRI 540
T A + T + L++++ S +A + + + K +IIDL+SPS P Q R V R
Sbjct: 486 TTAVAVHCTNQDPLIVESRSDRGHDATVPSFHASPSLPKIDIIDLLSPSPPPQFRMVPRC 545
Query: 541 REMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 579
+E SD+ I+ I+LSDSETE S E RKAR LR F+A IR
Sbjct: 546 QEASDKCIDVIDLSDSETEMSAEHARKARELRSFLAGIR 584
>gi|186510820|ref|NP_001118795.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|166221584|sp|Q9M2Z3.2|GENL2_ARATH RecName: Full=Flap endonuclease GEN-like 2
gi|332644951|gb|AEE78472.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 600
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 329/611 (53%), Positives = 427/611 (69%), Gaps = 42/611 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWD+LE CKKT PL HLQNKRVC+DLSCW+V+L VNKSY +K++LRG FHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC +I VSDG+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+GDNV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L+++ASEGLSF ++ + SKK+ C+ K + +NG + +R QVIDA+
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPERLEEIKQVIDAF 298
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AER+LRRFAN
Sbjct: 299 MNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFAN 358
Query: 361 LRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
L++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+
Sbjct: 359 LQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLV 418
Query: 419 ESACPEKIVEFEERRALRQPKK---------SKPKSSAAEIDQKLQALMLDIESENSTSS 469
E ACPEKI+EF+E+ A ++ K S P S++ ++ L+ LD+ NST
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL---NST-- 473
Query: 470 NASFSSRVVMSEDWTAATEIDLTRRQDL-LLDAESKSNAN------------MSCYPTGS 516
S SR + E + + + L L+D+ + N N MS +P
Sbjct: 474 --SLVSRSTLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFP--- 528
Query: 517 TAAKAEIIDLVSPSP-VQCRNVSRI---REMSDQPINT-IELSDSETEKSPELERKARAL 571
+ E+IDL+SP P + R+VSR ++ D + T IELSDSET+ E +KAR L
Sbjct: 529 LYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKAREL 587
Query: 572 RMFIASIRDDI 582
R+F+ +IR DI
Sbjct: 588 RIFLQNIRKDI 598
>gi|297816098|ref|XP_002875932.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
gi|297321770|gb|EFH52191.1| hypothetical protein ARALYDRAFT_485245 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 328/614 (53%), Positives = 422/614 (68%), Gaps = 48/614 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWD+LE CKKT PL HLQNKRVC+DLSCW+V+L VNKSY +K++LRGLFHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCAAKEKVYLRGLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC +I VSDG+IP IK+ TYRRRL + EV D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYRRRLKARFEVADDGVEPSKETSLKRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFSSDSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSSDSDIFLFGAKTVYREICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+G+NV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGENVI 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L+++ASEGL+F ++ + SKK+ C+ K + VNG + + QVIDA+
Sbjct: 241 LEKVASEGLAFAEKPRKSKKQVRPSVCSKK--GTLPLVVVNGNNREPEGLEQIKQVIDAF 298
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
+PKC+ ADS V R LA+ FQ +L ++C Q F+WPPEKTDEYILPK+AER+LRRFA
Sbjct: 299 MDPKCHQADSATVCRALAEFSFQRTKLQEICHQLFEWPPEKTDEYILPKVAERNLRRFAI 358
Query: 361 LRANTLALG-VDLPLQ-KVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
L +L + LQ ++P KCP++ IIK+RK+QG+ECFEVSW + GL++S+VPADL+
Sbjct: 359 LHKVPFSLARKKILLQPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLETSIVPADLV 418
Query: 419 ESACPEKIVEFEERRALR--------------QPKKSKPKSSAAEIDQKLQALMLDIESE 464
E ACPEKI+EF+E+ A + P KS SS AE+ +LQ L L
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKHKETSSPTKS---SSLAELSLELQHLDL----- 470
Query: 465 NSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL--LLDAESKSNAN--------MSCYPT 514
NST S +R + E+ E+ +++ D L+D+ + N N P+
Sbjct: 471 NST----SLVTRSTV-EEAEQENEVQNSKKHDYLCLIDSPDRENCNNAWSTRDRFGVGPS 525
Query: 515 G-STAAKAEIIDLVSPSP-VQCRNVSRIRE---MSDQPINT-IELSDSETEKSPELERKA 568
S + E+IDL+SP P + R+VSR + D + T IELSDSET+ E +KA
Sbjct: 526 SLSLYLETEVIDLISPCPEARSRSVSRSHQEQKRHDHQLETVIELSDSETDDE-EHCKKA 584
Query: 569 RALRMFIASIRDDI 582
R LR+F+ +IR DI
Sbjct: 585 RELRIFLENIRKDI 598
>gi|115474331|ref|NP_001060762.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|75162699|sp|Q8W5R1.1|GENL2_ORYSJ RecName: Full=Flap endonuclease GEN-like 2; AltName: Full=OsSEND-1;
AltName: Full=Single-strand DNA endonuclease 1
gi|16923283|dbj|BAB72003.1| single-strand DNA endonuclease-1 [Oryza sativa Japonica Group]
gi|113622731|dbj|BAF22676.1| Os08g0101600 [Oryza sativa Japonica Group]
gi|222639760|gb|EEE67892.1| hypothetical protein OsJ_25722 [Oryza sativa Japonica Group]
Length = 641
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/505 (55%), Positives = 371/505 (73%), Gaps = 23/505 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKK LPLHHLQNK+VC+DLSCW+VQ+ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ--DDKNLDKMSSLRRNMGSEF 118
+RAL+ALNC L+FV+DG+IP++KL+TYRRRL S S + D N SLRRN GSEF
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
SCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FLFGARTVYRD+
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKSVGDN
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
++L +I S G+ ++ K K G NK + + + + + + F VI+
Sbjct: 241 LILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
AY PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILPKIAER+LRRF
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRF 353
Query: 359 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL+ SVVP DL+
Sbjct: 354 SDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLV 413
Query: 419 ESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSS 469
+SACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L IE+++
Sbjct: 414 KSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLLGIEADSGGIL 470
Query: 470 NASFSSRVVMSEDWTAATE--IDLT 492
A+ S ++ +T A E +DL+
Sbjct: 471 GATASVCQTLTAAYTVAVEDVVDLS 495
>gi|357139431|ref|XP_003571285.1| PREDICTED: flap endonuclease GEN-like 2-like [Brachypodium
distachyon]
Length = 706
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/480 (57%), Positives = 359/480 (74%), Gaps = 26/480 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDIL+SCK+ LPL+HLQNK+VC+DLSCW+VQ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILDSCKQKLPLNHLQNKKVCVDLSCWLVQFCSANRSPAFVKDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+RAL+ALNC LIFV+DG+IP++KL+TYRRRL S SE T D+ N ++SLRRN GSEFS
Sbjct: 61 IRALLALNCSLIFVTDGAIPSVKLATYRRRLGSNSEATHDETNPQPLTSLRRNKGSEFSR 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKEAK LGL+LG+PCL+GVEE EAQCALLNL SLC+GCF+SDSD FLFGARTVYRD+++
Sbjct: 121 MIKEAKNLGLALGIPCLDGVEEGEAQCALLNLTSLCEGCFTSDSDAFLFGARTVYRDVFI 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYV+CYEM+DIE+KLGFGR SLI+LALLLG DYS GVRG GPE+AC++VKS+G++ +
Sbjct: 181 GEGGYVICYEMEDIEKKLGFGRKSLISLALLLGCDYSNGVRGFGPEAACRLVKSMGEDTI 240
Query: 241 LQRIASEGLSFVKRAK------NSKKEG-WSFKCNNKEESLNQEINVNGTDHSLQRETPF 293
L +I S+G+ ++ K N KK G S + ++ E +++Q+ F
Sbjct: 241 LDQILSDGVKATRKCKAKMVGINKKKVGDVSTEASSSEAAMSQDSGDQ-----------F 289
Query: 294 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 353
+ I A+ PKC+S DSE V RV QH F ++L Q+C + F W PEKTDEYILPKIAER
Sbjct: 290 REAITAFLEPKCHSPDSENVRRVCCQHPFLRSQLQQICEKCFDWTPEKTDEYILPKIAER 349
Query: 354 DLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVV 413
+LRRF+NLR+ + ALG+ L ++PV CP+ IIK RK+QG E +EVSW +GL+SS V
Sbjct: 350 ELRRFSNLRSTSSALGIQPSLSEIPVPCPVLAIIKQRKVQGSEYYEVSWRNMHGLQSSAV 409
Query: 414 PADLIESACPEKIVEFEERRALR-------QPKKSKPKSSAAEIDQKLQALMLDIESENS 466
P DLI SACPEKI EF E++ +PKKS +++ ++D +LQ LML IESE++
Sbjct: 410 PGDLIRSACPEKITEFFEKKGEEKKQKRKARPKKSA-QAAVKDVDARLQELMLGIESESA 468
>gi|226529749|ref|NP_001149363.1| XPG I-region family protein [Zea mays]
gi|224029981|gb|ACN34066.1| unknown [Zea mays]
gi|413941545|gb|AFW74194.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 290/564 (51%), Positives = 382/564 (67%), Gaps = 54/564 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDIL+SCKK LPL HLQNK+VC+DLSCW+VQ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 119
+RALIALNC LIFVSDG+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN SLCDGCF+SDSD FLFGA+TVYRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTVYRDVF 180
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+GE GYV+CYEM+DI+ KLGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKS+GD+
Sbjct: 181 IGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDDT 240
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHSLQRETPFSQ 295
VL +I S+G VK A+ K +G + + E+ +N S F
Sbjct: 241 VLGQILSDG---VKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQ-----FRD 292
Query: 296 VIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 355
+I+AY PKC+S DSEAV R +Q F ++LHQ+C Q+F W P KTDEYILPKIAER+L
Sbjct: 293 IINAYLEPKCHSPDSEAVQRACSQRPFLRSQLHQICEQYFAWSPVKTDEYILPKIAEREL 352
Query: 356 RRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPA 415
RRF+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP
Sbjct: 353 RRFSNLRSTSSDLGMKPSLNEIPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPG 412
Query: 416 DLIESACPEKIVEFEERRAL--RQPKKSKPKSSA----AEIDQKLQALMLDIESENSTSS 469
+L+ SACPEKI EF E + +Q ++++PK S ++D +LQ L+L IESE
Sbjct: 413 ELVRSACPEKITEFLESKDAQKKQKRRARPKKSGQAAVKDVDAQLQELLLGIESE----- 467
Query: 470 NASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSP 529
S S + TAA ++ A E +DL SP
Sbjct: 468 --SGSFPCTANGPQTAAIQM---------------------------VAPLQEFVDLSSP 498
Query: 530 S-PVQCRNVSRIREMSDQPINTIE 552
S P++ ++R R++SD T++
Sbjct: 499 SPPIRSCKIARSRKLSDSDTVTMD 522
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 520 KAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 579
+A +IDL SPSPV+ N R + + + +SPE ERKAR LR+F+ SIR
Sbjct: 633 EAAMIDLSSPSPVKVDNSRRNGKK--------DCEAGSSSQSPEHERKARELRLFLDSIR 684
Query: 580 DDI 582
D++
Sbjct: 685 DEL 687
>gi|242080167|ref|XP_002444852.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
gi|241941202|gb|EES14347.1| hypothetical protein SORBIDRAFT_07g000270 [Sorghum bicolor]
Length = 698
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/477 (56%), Positives = 354/477 (74%), Gaps = 15/477 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDIL+SCKK LPL HLQNK+VC+DLSCW+VQ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 119
+RAL+ALNC LIFVSDG+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALLALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MIKEAK LGL+LG+PCL+GVEEAEAQCA+LN SLCDGCF+SDSD FLFGARTVYRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGVEEAEAQCAMLNFASLCDGCFTSDSDSFLFGARTVYRDVF 180
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+GE GYV+CYEM+DI++KLGFGRNSLI+LA+LLGSDYS GV G GPE AC++VKSVGD+
Sbjct: 181 IGEGGYVICYEMEDIQKKLGFGRNSLISLAVLLGSDYSNGVHGFGPELACRLVKSVGDDA 240
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNK-EESLNQEINVNGTDHSLQRETPFSQVID 298
+L +I S+G+ ++ K + + ++ E+ +N D Q F +I+
Sbjct: 241 ILDQILSDGVKPARKCKGKNSGAIAGRVGGTCPKASTCEVGIN-QDSGGQ----FRDIIN 295
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
AY PKC+S DSEAV R +Q F ++L Q+C Q+F+W P KTDEYILPKIAER+LRRF
Sbjct: 296 AYLEPKCHSPDSEAVQRACSQQPFLRSQLQQICEQYFEWSPVKTDEYILPKIAERELRRF 355
Query: 359 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP DL+
Sbjct: 356 SNLRSTSSDLGIKPSLDEMPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPGDLV 415
Query: 419 ESACPEKIVEFEERRAL--RQPKKSKPKSSA------AEIDQKLQALMLDIESENST 467
SACPEKI F E + +Q ++++PK S ++D +LQ L+L IESE+ST
Sbjct: 416 RSACPEKITVFLENKDAQKKQKRRARPKKSGQAAAALKDVDAQLQELLLGIESESST 472
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 516 STAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFI 575
S + +IDL SPSPV+ V + R +P E D +SPE ERKAR LR+F+
Sbjct: 636 SEVVEPTMIDLSSPSPVK---VDKSRRNGQKPDQDCEADDGS--QSPEHERKARELRLFL 690
Query: 576 ASIRDDIS 583
SIRD+++
Sbjct: 691 NSIRDELN 698
>gi|195626660|gb|ACG35160.1| XPG I-region family protein [Zea mays]
Length = 688
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 288/564 (51%), Positives = 380/564 (67%), Gaps = 54/564 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDIL+SCKK LPL HLQNK+VC+DLSCW+VQ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQFCSANRSPAFLRDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMGSEFS 119
+RALIALNC LIFVSDG+IP++KL+TYRRRL + +E T+++ N ++SLRRN SEFS
Sbjct: 61 IRALIALNCSLIFVSDGAIPSVKLATYRRRLGLNAAEATREEANSQPLTSLRRNKSSEFS 120
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MIKEAK LGL+LG+PCL+G+EEAEAQCALLN SLCDGCF+SDSD FLFGA+T YRD++
Sbjct: 121 RMIKEAKHLGLALGIPCLDGMEEAEAQCALLNFSSLCDGCFTSDSDSFLFGAKTFYRDVF 180
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+GE GYV+CYEM+DI+ KLGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKS+GD+
Sbjct: 181 IGEGGYVICYEMEDIQNKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSLGDDT 240
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHSLQRETPFSQ 295
VL +I S+G VK A+ K +G + + E+ +N S F
Sbjct: 241 VLGQILSDG---VKPARKCKGKGSGANAGTVGGTCPKASTCEVGINQDSGSQ-----FRD 292
Query: 296 VIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 355
+I+AY PKC+S DSEAV R +Q F ++LHQ+ Q+F W P KTDEYILPKIAER+L
Sbjct: 293 IINAYLEPKCHSPDSEAVQRACSQRPFLRSQLHQIYEQYFAWSPVKTDEYILPKIAEREL 352
Query: 356 RRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPA 415
RRF+NLR+ + LG+ L ++PV CP+ I+K RK+QG E +EVSW GL+ SVVP
Sbjct: 353 RRFSNLRSTSSDLGMKPSLNEIPVPCPVLAIVKQRKVQGSEYYEVSWRNIDGLQVSVVPG 412
Query: 416 DLIESACPEKIVEFEERRAL--RQPKKSKPKSSA----AEIDQKLQALMLDIESENSTSS 469
+L+ SACPEKI EF E + +Q ++++PK S ++D +LQ L+L IESE
Sbjct: 413 ELVRSACPEKITEFLESKDAQKKQKRRARPKKSGQAAVKDVDAQLQELLLGIESE----- 467
Query: 470 NASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSP 529
S S + TAA ++ A E +DL SP
Sbjct: 468 --SGSFPCTANGPQTAAIQM---------------------------VAPLQEFVDLSSP 498
Query: 530 S-PVQCRNVSRIREMSDQPINTIE 552
S P++ ++R R++SD T++
Sbjct: 499 SPPIRSCKIARSRKLSDSDTVTMD 522
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 520 KAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPELERKARALRMFIASIR 579
+A +IDL SPSPV+ N R + + + +SPE ERKAR LR+F+ SIR
Sbjct: 633 EAAMIDLSSPSPVKVDNSRRNGKK--------DCEAGSSSQSPEHERKARELRLFLDSIR 684
Query: 580 DDI 582
D++
Sbjct: 685 DEL 687
>gi|218200332|gb|EEC82759.1| hypothetical protein OsI_27479 [Oryza sativa Indica Group]
Length = 632
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/503 (53%), Positives = 355/503 (70%), Gaps = 28/503 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKK LPLHHLQNK+VC+DLSCW+VQ+ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+RAL+ALNC L+FV+ I S + D N SLRRN GSEFSC
Sbjct: 61 IRALLALNCTLLFVTGNPILLFYFSFLAAK-------ESDQPNSHPSISLRRNKGSEFSC 113
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FLFGARTVYRD+++
Sbjct: 114 MIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDVFI 173
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKSVGDN++
Sbjct: 174 GEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDNLI 233
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L +I S G+ ++ K K G NK + + + + + + F VI+AY
Sbjct: 234 LDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQDSDGQFRDVINAY 286
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILPKIAER+LRRF++
Sbjct: 287 LEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRFSD 346
Query: 361 LRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 420
LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL+ SVVP DL++S
Sbjct: 347 LRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLVKS 406
Query: 421 ACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNA 471
ACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L IE+++ A
Sbjct: 407 ACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLLGIEADSGGILGA 463
Query: 472 SFSSRVVMSEDWTAATE--IDLT 492
+ S ++ +T A E +DL+
Sbjct: 464 TASVCQTLTAAYTVAVEDVVDLS 486
>gi|186510818|ref|NP_190459.2| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
gi|332644950|gb|AEE78471.1| Flap endonuclease GEN-like 2 [Arabidopsis thaliana]
Length = 536
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 263/518 (50%), Positives = 350/518 (67%), Gaps = 44/518 (8%)
Query: 95 SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
S++ D K +SL+RNMGSEFSC+IKEAK + +LG+ CL+G+EEAEAQCALLN ES
Sbjct: 31 SQIADDGVEPSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSES 90
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
LCD CFS DSDIFLFGA+TVYR+I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGS
Sbjct: 91 LCDACFSFDSDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGS 150
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 274
DYSQGVRGL E AC++V+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K
Sbjct: 151 DYSQGVRGLRQEKACELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GT 208
Query: 275 NQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQF 334
+ +NG + +R QVIDA+ NPKC+ ADS V R LA+ FQ +L ++C QF
Sbjct: 209 LPLVVINGNNRDPERLEEIKQVIDAFMNPKCHQADSNTVSRALAEFSFQRTKLQEICHQF 268
Query: 335 FQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQK--VPVKCPITGIIKSRKL 392
F+WPPEKTDEYILPK+AER+LRRFANL++ + + V+LPL K +P KCP++ IIK+RK+
Sbjct: 269 FEWPPEKTDEYILPKVAERNLRRFANLQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKV 328
Query: 393 QGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKP 443
QG+ECFEVSW + GL+SS+VPADL+E ACPEKI+EF + + +Q + S P
Sbjct: 329 QGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSP 388
Query: 444 KSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDL--LLDA 501
S++ ++ L+ LD+ NST S SR + E E +++ D L+D+
Sbjct: 389 TKSSSLVELSLELQHLDL---NST----SLVSRSTLEEA-EQENEQQNSKKHDYLRLIDS 440
Query: 502 ESKSNAN------------MSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRI---REMSD 545
+ N N MS +P + E+IDL+SP P + R+VSR ++ D
Sbjct: 441 PDRENCNNAWSNRDRLGVGMSSFP---LYPETEVIDLISPCPEARSRSVSRSYQEQKSHD 497
Query: 546 QPINT-IELSDSETEKSPELERKARALRMFIASIRDDI 582
+ T IELSDSET+ E +KAR LR+F+ +IR DI
Sbjct: 498 HQLETVIELSDSETDDE-EHCKKARELRIFLQNIRKDI 534
>gi|449520116|ref|XP_004167080.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 299
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/313 (68%), Positives = 252/313 (80%), Gaps = 15/313 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKKTLPLH LQNKR+CIDLSCWIV+L +V+KS+ K +L+GLF+R
Sbjct: 1 MGVKNLWDILESCKKTLPLHRLQNKRLCIDLSCWIVELSSVSKSHCHSNSKFYLKGLFYR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LR LIALNC LIFV+DGSIP IKLSTYRRRLN+G+EV Q D N ++ SL+RN GSEFS
Sbjct: 61 LRTLIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQTDANPQQICSLKRNKGSEFSL 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKEA+ALGL+LG+PCL+ VEEAEAQCALLN E LCDGCF+SDSD FLFGARTVYRDI L
Sbjct: 121 MIKEAQALGLALGIPCLDAVEEAEAQCALLNSELLCDGCFTSDSDAFLFGARTVYRDICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
G+ G+VVCYEMDDIE +LGFGRNS+IT ALLLGSDYSQGV G+G ESACQ+VK+VGD V
Sbjct: 181 GDSGHVVCYEMDDIETRLGFGRNSMITFALLLGSDYSQGVYGMGRESACQLVKAVGDGAV 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
LQ+I SEGL+ K+ +NSKK+G + +G H + + FS+VIDAY
Sbjct: 241 LQKITSEGLALAKKGENSKKQG---------------LPKSGHGHYMLKCDEFSEVIDAY 285
Query: 301 SNPKCYSADSEAV 313
PKC+SADSEAV
Sbjct: 286 LKPKCHSADSEAV 298
>gi|7576228|emb|CAB87918.1| putative protein [Arabidopsis thaliana]
Length = 337
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/325 (57%), Positives = 232/325 (71%), Gaps = 14/325 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWD+LE CKKT PL HLQNKRVC+DLSCW+V+L VNKSY +K++LRG FHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC +I VSDG+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC-FSSDSD----IFLFGARTVY 175
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLC +S + D FL + V
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCRNMPWSVERDSLVCWFLLPSDMVN 180
Query: 176 RDIW-------LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 228
I LGE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E A
Sbjct: 181 SIISPNKFANELGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKA 240
Query: 229 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
C++V+S+GDNV+L+++ASEGLSF ++ + SKK+ C+ K + +NG + +
Sbjct: 241 CELVRSIGDNVILEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPE 298
Query: 289 RETPFSQVIDAYSNPKCYSADSEAV 313
R QVIDA+ NPKC+ ADS V
Sbjct: 299 RLEEIKQVIDAFMNPKCHQADSNTV 323
>gi|449533599|ref|XP_004173761.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Cucumis
sativus]
Length = 294
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/274 (50%), Positives = 191/274 (69%), Gaps = 19/274 (6%)
Query: 315 RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPL 374
+VL QH FQH +L Q+CA+FF+W PEKTDE ILPKIAERDLRRFAN+R+ T LG +PL
Sbjct: 29 QVLDQHPFQHVKLQQICAEFFEWSPEKTDENILPKIAERDLRRFANIRSRTSELGFHIPL 88
Query: 375 QKV--PVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432
Q+V PV CP++GI+K RK+QG EC+EVSW ++ GL SVV ADL++ ACPE I+EFEE+
Sbjct: 89 QEVIIPVSCPVSGIVKHRKVQGNECYEVSW-KNIGLNLSVVSADLLQRACPEMIIEFEEK 147
Query: 433 RA--LRQPK-KSKPKSSA---AEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAA 486
RA +Q K K+K K SA AEID++L+ L+L+IESE+ N S V + T+
Sbjct: 148 RADGKKQNKGKTKTKKSAAVMAEIDKRLKTLLLEIESESRVVHNISH----VPIDSKTSG 203
Query: 487 TEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-VQCRNVSRIREMSD 545
T + Q++ L+ E + + + + E+IDL+SPSP +Q RNVS+ ++ +
Sbjct: 204 TGVH-ELNQEVFLNIE----PIIVDHARSCSTKRIEVIDLLSPSPAIQTRNVSKFQQKTS 258
Query: 546 QPINTIELSDSETEKSPELERKARALRMFIASIR 579
Q I+ I+LSD+E ++SPE ERKAR LR F+AS++
Sbjct: 259 QKIDVIDLSDTEIDQSPEHERKARELRSFLASLK 292
>gi|302772224|ref|XP_002969530.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
gi|300163006|gb|EFJ29618.1| hypothetical protein SELMODRAFT_410274 [Selaginella moellendorffii]
Length = 454
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 168/497 (33%), Positives = 265/497 (53%), Gaps = 79/497 (15%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L+RN GS+F M+++A AL + G+PCL +EEAEAQCA LN D CF++DSD LF
Sbjct: 10 LKRNKGSQFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFTADSDALLF 69
Query: 170 GARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
GA+ VY+DI L GE +VV Y+M I G+GRNSLI L +LLG DY GV GLGPE
Sbjct: 70 GAKVVYKDISLKPGE-SHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGVHGLGPEK 128
Query: 228 ACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
A QIVK G++ +L+ + +G ++ KR + KC +KE S V+ H
Sbjct: 129 AQQIVKKFGEDKILEEMLRQGPVTLAKR---------TLKCKDKENS-----TVSSDAHG 174
Query: 287 LQRETPFS-QVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFF----QWPPEK 341
+ + + I AY++PKC++ SEAVHR + + + V A ++ +W P +
Sbjct: 175 FSEDDNMACKAIFAYTHPKCHAQTSEAVHRQVNMLINKDESRVSVAACYWVDLSKWIPSE 234
Query: 342 -----------------TDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPIT 384
D+YILPK+AERD+ R A+++A + GV+L ++ I+
Sbjct: 235 EYACKNSNGQSSIANFDADDYILPKLAERDVHRMASMQAAS--SGVNL----AGLQFKIS 288
Query: 385 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKPK 444
I+K R+L+G + +EV W + + SS V A+L++ A P K+ EF + AL+ K ++
Sbjct: 289 EIVKKRQLRGVDHYEVKWVGNPDIPSSAVRAELVQRAYPSKVAEFMAKLALKGGKSTRRP 348
Query: 445 SSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAATEIDLTRRQDLLLDAESK 504
+ D + + +E + TS N ++ + +DW E+ +D D E+
Sbjct: 349 NDLVTSDLCGRLNKMTVE-DGKTSMN-----KMAVKDDWKTMMEV-----KD---DGETP 394
Query: 505 SNANMSCYPTGSTAAKAEIIDLVSPSPVQCRNVSRIREMSDQPINTIELSDSETEKSPEL 564
S + + + A++ E+IDL +P + I+ +E SD++ + +L
Sbjct: 395 SIIDAFHHIKQNDASRLEVIDLTTP--------------LGKGIHLVEASDNDDD---DL 437
Query: 565 ERKARA--LRMFIASIR 579
+ +AR L+ FIASI+
Sbjct: 438 KHQARVRQLKSFIASIK 454
>gi|302810129|ref|XP_002986756.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
gi|300145410|gb|EFJ12086.1| hypothetical protein SELMODRAFT_425660 [Selaginella moellendorffii]
Length = 336
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 186/323 (57%), Gaps = 36/323 (11%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L+RN GSEF M+++A AL + G+PCL +EEAEAQCA LN D CF++DSD LF
Sbjct: 10 LKRNKGSEFGRMVEDATALATAFGIPCLVSLEEAEAQCAALNAMGFADACFTADSDALLF 69
Query: 170 GARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
GA+ VY+DI L GE +VV Y+M I G+GRNSLI L +LLG DY GV GLGPE
Sbjct: 70 GAKVVYKDISLKPGE-SHVVAYDMTKIRNAFGYGRNSLIALGILLGCDYFPGVHGLGPEK 128
Query: 228 ACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
A QIVK G++ +L+ + +G ++ KR + KC +K S V H
Sbjct: 129 AQQIVKKFGEDKILEEMLRQGPVTLAKR---------TLKCKDKANS-----TVASDAHG 174
Query: 287 LQRETPFS-QVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA----QFFQWPPEK 341
+ + + I AY++PKC++ SEAVHR + + + V A +W P +
Sbjct: 175 FSEDDNMACKAIFAYTHPKCHAQTSEAVHRQVNMLIKKDESRVSVAACCWVDVSKWIPSE 234
Query: 342 -------TDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQG 394
TD+YILPK+AERD+ R A+++A + GV+L ++ I+ I+K R+L+G
Sbjct: 235 EYACKNSTDDYILPKLAERDVHRMASMQAAS--SGVNL----AGLQFKISEIVKKRQLRG 288
Query: 395 KECFEVSWEESYGLKSSVVPADL 417
+ +EV W + + SS V A+L
Sbjct: 289 VDHYEVKWVGNPDIPSSAVRAEL 311
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 210/453 (46%), Gaps = 76/453 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+ LW IL K L LQ K + +DLS W+ + V K+ + LR LF R
Sbjct: 1 MGVQQLWTILAPVKTHCALESLQGKTLAVDLSMWVCEASGV-KAMTGAVTRPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS---GSEVTQDDKNLDKMSSLRRNMGSE 117
+ L + GLIFV DG P +K T +R GS+ Q K L K ++R S
Sbjct: 60 VSHLTKMGVGLIFVVDGEPPELKFQTMMKRNQDRFWGSKTGQK-KGLGKPKKMKR---SH 115
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F ++KE L LG+P ++ EAEA CALLN ESL DGC + D D FL+GARTVYR+
Sbjct: 116 FKAILKECILLLDGLGIPHVQSKGEAEAFCALLNRESLVDGCLTDDGDAFLYGARTVYRN 175
Query: 178 IWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 235
+ L ++ +V CY+M DIE KL RN L+ LALLLG DY +GV G+G E A +++ ++
Sbjct: 176 LTLDKKDPHVDCYQMSDIEEKLLLDRNKLVGLALLLGCDYCPKGVPGVGKELAVRVMTAL 235
Query: 236 GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP--- 292
VL+R FK + ETP
Sbjct: 236 ETCDVLER---------------------FKV-------------------WRSETPCEM 255
Query: 293 FSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352
+Q + K S + + + L F + ++ +WP E T E +LP +
Sbjct: 256 TNQPKGSQKRAKNSSIEVTVMRKALIDPAFPDTK--ELNLXLLEWPEEYTLEKVLPLVTY 313
Query: 353 RDLRRFANLRANTLALGVDLPLQKV--PVKCPITGIIKSRKLQGKECFEVSWEESYGLK- 409
++ P QK P P + ++K+R G C EV W + G+
Sbjct: 314 WEMSHLQT------------PHQKKNRPSLSPHS-VVKTRTRNGVPCLEVQWYKPDGITA 360
Query: 410 -----SSVVPADLIESACPEKIVEFEERRALRQ 437
+++ P DL SA P + EF E++A +Q
Sbjct: 361 EEDYVTTIEPEDLFTSAFPRLVQEFREKKAAQQ 393
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 145/255 (56%), Gaps = 20/255 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQN-VNKSYRPQTDKLFLRGLFH 59
MGVK+LW+IL + PL+ LQ K + IDLS W+V Q V+ + +P K++LR L+
Sbjct: 1 MGVKDLWNILSPLCERKPLYELQGKTIAIDLSGWVVDSQTIVDNAVQP---KMYLRNLYF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSE 117
R L+ +FV +G P +K T RR + SG + ++ + ++ ++
Sbjct: 58 RTAFLLMQGISPVFVLEGKAPTLKHKTIARRNDVRSGFQ--------ERKEAAKKGGRTQ 109
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ ++ E K + +G+ C++ EAEA CA LN L DGC S DSD FL+GA+ VYR+
Sbjct: 110 FNRVLNECKEMLKFMGIACVQSYGEAEAMCAYLNENGLVDGCVSQDSDCFLYGAKIVYRN 169
Query: 178 IWLGE------RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
+ G + Y M+ IE+ L GRN +I LALL G DYS+GV G+G E+A +
Sbjct: 170 FCTSKGNNGATAGSIDVYNMEKIEKTLNIGRNKMIVLALLCGCDYSEGVNGVGKEAALKF 229
Query: 232 VKSVGDNVVLQRIAS 246
K+V D VLQRI +
Sbjct: 230 FKTVDDENVLQRIQN 244
>gi|281344218|gb|EFB19802.1| hypothetical protein PANDA_002978 [Ailuropoda melanoleuca]
Length = 906
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 219/491 (44%), Gaps = 73/491 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ L LH+L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K RR Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPKLKADVICRR-------NQMRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++++
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIRTLKGQ 232
Query: 239 VVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQE 277
+LQR + L+ K A K+ + G K N E + E
Sbjct: 233 SLLQRFTQWNEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCEPHDYE 292
Query: 278 INVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------- 330
H + + S V ++ K YS + H V+ + L +L +V
Sbjct: 293 YCCPCEWHRTEHDRQLSTVENSIKK-KAYSCEGFPFHEVIQEFLLNKDKLVKVIRYQRPD 351
Query: 331 -------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVKC 381
+ +WP E +L + D+ R+ +N L P++
Sbjct: 352 LLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ----------PIR- 400
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKIVEFEE 431
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + ++
Sbjct: 401 ----IVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEESLFEAAYPEIVAVHQK 456
Query: 432 RRALRQPKKSK 442
+ + KK K
Sbjct: 457 QNLELKGKKQK 467
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 145/254 (57%), Gaps = 18/254 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV-NKSYRPQTDKLFLRGLFH 59
MGVK+LW+IL + P+ LQ K V ID+SCWIV Q V + S +P K++LR L+
Sbjct: 1 MGVKDLWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQP---KMYLRNLYF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
R L+ +FV +G P +K T +R + S + + + ++F+
Sbjct: 58 RTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRS-------GFREKKTASKGGRTQFN 110
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++ E K + +G+ C++G EAEA CA LN + L DGC S DSD FL+GA+TVYR+
Sbjct: 111 RILNECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKTVYRNFC 170
Query: 180 L---GER----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
G R G V Y+++ IER L GRN +I LALL G DY+ G+ G+G E+A ++
Sbjct: 171 TSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVGKEAAMKLF 230
Query: 233 KSVGDNVVLQRIAS 246
K V D +L+R+ S
Sbjct: 231 KIVNDEDILERMKS 244
>gi|301758368|ref|XP_002915044.1| PREDICTED: flap endonuclease GEN homolog 1-like [Ailuropoda
melanoleuca]
Length = 907
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 219/491 (44%), Gaps = 73/491 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ L LH+L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHLHLHNLCGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K RR Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPKLKADVICRR-------NQMRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++++
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIRTLKGQ 232
Query: 239 VVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQE 277
+LQR + L+ K A K+ + G K N E + E
Sbjct: 233 SLLQRFTQWNEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCEPHDYE 292
Query: 278 INVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------- 330
H + + S V ++ K YS + H V+ + L +L +V
Sbjct: 293 YCCPCEWHRTEHDRQLSTVENSIKK-KAYSCEGFPFHEVIQEFLLNKDKLVKVIRYQRPD 351
Query: 331 -------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVKC 381
+ +WP E +L + D+ R+ +N L P++
Sbjct: 352 LLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ----------PIR- 400
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKIVEFEE 431
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + ++
Sbjct: 401 ----IVKTRIRNGIHCFEIEWEKPEHYAMEDKHGELVLQTIEEESLFEAAYPEIVAVHQK 456
Query: 432 RRALRQPKKSK 442
+ + KK K
Sbjct: 457 QNLELKGKKQK 467
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 18/254 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV-NKSYRPQTDKLFLRGLFH 59
MGVK+LW+IL + P+ LQ K V ID+SCWIV Q V + S +P K++LR L+
Sbjct: 1 MGVKDLWNILSPLSERKPMFELQGKTVAIDMSCWIVDSQTVTDHSAQP---KMYLRNLYF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
R L+ +FV +G P +K T +R + S + + + ++F+
Sbjct: 58 RTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRS-------GFREKKTASKGGRTQFN 110
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++ E K + +G+ C++G EAEA CA LN + L DGC S DSD FL+GA+ VYR+
Sbjct: 111 RILNECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFC 170
Query: 180 L---GER----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
G R G V Y+++ IER L GRN +I LALL G DY+ G+ G+G E+A ++
Sbjct: 171 TSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALALLCGCDYNDGLNGVGKEAAMKLF 230
Query: 233 KSVGDNVVLQRIAS 246
K V D +LQR+ S
Sbjct: 231 KIVNDKDILQRMKS 244
>gi|440909937|gb|ELR59789.1| Flap endonuclease GEN-like protein 1, partial [Bos grunniens mutus]
Length = 906
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 220/501 (43%), Gaps = 92/501 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPHLKADVISKR-------NQVRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQ 232
Query: 239 VVLQRIAS-----------------------------------EGLSFVKRAKNSKKEGW 263
+LQR G + + + +
Sbjct: 233 SLLQRFNQWSEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCKLCQTDRYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
++C + E +N +++++++ PF +V + K + V V
Sbjct: 293 EYRCPCEWHRTEHERQLNAVENNIKKKACSCEGFPFHEVTQEFLLNK-----DKLVKAVR 347
Query: 318 AQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVD 371
Q LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 348 YQRPDLLLFQRFTLEKM-----EWPNHYACEKLLTLLTHYDMTERKLGRRNSNQLQ---- 398
Query: 372 LPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESA 421
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A
Sbjct: 399 ------PIR-----IVKNRIRNGVHCFEIEWEKPEHYAIEDKHGELVVQTIEEESLFEAA 447
Query: 422 CPEKIVEFEERRALRQPKKSK 442
PE + ++++++ + KK K
Sbjct: 448 YPEIVAIYQKQKSENKGKKQK 468
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 137/251 (54%), Gaps = 16/251 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK+LW+IL PL+ LQ K + IDLS W+V Q + + K++LR L+ R
Sbjct: 1 MGVKDLWNILSPLCDRKPLYELQGKTIAIDLSGWVVDSQTIVDN--AVQSKMYLRNLYFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L+ +FV +G P IK T RR N + + ++ S+F+
Sbjct: 59 TAFLLMHGISPVFVLEGKAPDIKHKTIIRRHNVRHGFCE-------RKTSKKGGRSQFNR 111
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++ E K + +G+ C++ EAEA CA LN + L DGC S DSD FL+GAR VYR+
Sbjct: 112 ILTECKQMLEYMGITCIQSHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGARIVYRNFCT 171
Query: 181 ------GERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
G RG V Y MD IE+ L GRN +I LALL G DY +GV G+G E+A + K
Sbjct: 172 SIQGNCGARGGSVDIYCMDKIEKILNIGRNKMIALALLCGCDYDEGVTGVGKEAALKFFK 231
Query: 234 SVGDNVVLQRI 244
V DN VLQRI
Sbjct: 232 IVEDNNVLQRI 242
>gi|397513474|ref|XP_003827038.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Pan paniscus]
gi|397513476|ref|XP_003827039.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Pan paniscus]
gi|397513478|ref|XP_003827040.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan paniscus]
Length = 908
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 220/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GARTVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKEESLNQ 276
+LQR +S L K+ K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSYPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C + H V+ + L +L +V
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|426334793|ref|XP_004028921.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426334795|ref|XP_004028922.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 908
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 223/503 (44%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHMPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN + DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNADGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSICSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAVYQKQKLEIKGKKQK 469
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 144/256 (56%), Gaps = 22/256 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTDKLFLRGLFH 59
MGVK+LW+IL + PL LQ K + IDLSCW+V Q + Y +P K++LR L+
Sbjct: 1 MGVKDLWNILSPLCERKPLFELQGKTIAIDLSCWVVDSQTIVDHYVQP---KMYLRNLYF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSE 117
R L+ +FV +G PA+K +T +R + SG + S+++ ++
Sbjct: 58 RTIFLLMQGILPVFVLEGKAPALKYNTIAKRNDIRSG---------FQEKKSIQKKGRTQ 108
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F ++ E K + +G+ C++G EAEA CA LN + L DGC S DSD FL+GA+ VYR+
Sbjct: 109 FKKILNECKEMLEYMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRN 168
Query: 178 IWL-------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
G G V Y ++ IE+ L GRN +I LALL G DY G+ G+G E+A +
Sbjct: 169 FCTSAQGNRGGTGGAVDEYRLEKIEKVLQLGRNKMIVLALLCGCDYDDGLNGVGKEAAMK 228
Query: 231 IVKSVGDNVVLQRIAS 246
+ K V + +++RI +
Sbjct: 229 LFKIVENKDIIERIKN 244
>gi|114576279|ref|XP_001136636.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Pan
troglodytes]
gi|410034836|ref|XP_003949810.1| PREDICTED: flap endonuclease GEN homolog 1 [Pan troglodytes]
gi|410218742|gb|JAA06590.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410255580|gb|JAA15757.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410287868|gb|JAA22534.1| Gen homolog 1, endonuclease [Pan troglodytes]
gi|410352247|gb|JAA42727.1| Gen homolog 1, endonuclease [Pan troglodytes]
Length = 908
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 219/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRSLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GARTVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGARTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKEESLNQ 276
+LQR +S L K+ K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C + H V+ + L +L +V
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|296224442|ref|XP_002758061.1| PREDICTED: flap endonuclease GEN homolog 1 [Callithrix jacchus]
Length = 909
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 170/634 (26%), Positives = 277/634 (43%), Gaps = 101/634 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PLH+L + + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLHNLGGQILAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGFSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGRVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY+M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYKMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQ 276
+LQR + E L K A K+ ++ G K N E +
Sbjct: 233 SLLQRFNRWNETSCNSSPEPLVTKKLAHCSICSHPGSPKDHERNGCRLCKSNKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C + H V+ + L +L +V
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKAC-GCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGRRHSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ + L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYVMEDKQHGEFALLTTEEEALFEAAYPEIVAIY 456
Query: 430 EERR--ALRQPKKS-KPK-SSAAEID--QKLQALML-----DIESENSTSSNASFSSRVV 478
++++ R+ +KS KPK ++ E D Q+ M +I + S+ N S +
Sbjct: 457 QKQKLEIKRKKQKSIKPKENNLPEPDDVMSFQSHMTLKPTSEIFHKQSSKLNLGISPELK 516
Query: 479 MSEDWTAATEIDLTRRQDLLLDAESKSNAN----MSCYPTGSTAAKAEIIDLVSPSP--- 531
++++ +A+ L LL SNA S P KA L+S S
Sbjct: 517 LTQESISASLHSL-----LLPKNAPYSNAQEQFMSSPRPLAIQQIKAVTKSLISESSQPG 571
Query: 532 VQCRNVSRIREMSDQPINTIELSDSETEKSPELE 565
C N+S I +D ++TI+ + SP ++
Sbjct: 572 TSCHNISVI---TDLHLSTIDWEGTSFSNSPVIQ 602
>gi|194018531|ref|NP_872431.3| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|194018535|ref|NP_001123481.1| flap endonuclease GEN homolog 1 [Homo sapiens]
gi|290457644|sp|Q17RS7.2|GEN_HUMAN RecName: Full=Flap endonuclease GEN homolog 1
Length = 908
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 220/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQSRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKEESLNQ 276
+LQR +S L K+ K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C + H V+ + L +L +V
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|329664332|ref|NP_001192379.1| flap endonuclease GEN homolog 1 [Bos taurus]
gi|296482355|tpg|DAA24470.1| TPA: flap structure-specific endonuclease-like [Bos taurus]
Length = 906
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 219/501 (43%), Gaps = 92/501 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHVHLHSLSGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPHLKADVISKR-------NQVRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQ 232
Query: 239 VVLQRIAS-----------------------------------EGLSFVKRAKNSKKEGW 263
+LQR G + + + +
Sbjct: 233 SLLQRFNQWSEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERNGCKLCQTDRYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
++C + E +N +++++++ PF +V + K + V V
Sbjct: 293 EYRCPCEWHRTEHERQLNAVENNIKKKACSCEGFPFHEVAQEFLLNK-----DKLVKAVR 347
Query: 318 AQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVD 371
Q LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 348 YQRPDLLLFQRFTLEKM-----EWPNHYACEKLLTLLTHYDMTERKLGRRNSNQLQ---- 398
Query: 372 LPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESA 421
P++ I+K+R G CFE+ WE E Y ++ ++ L E+A
Sbjct: 399 ------PIR-----IVKNRIRNGVHCFEIEWEKPEHYTIEDKHGELAVQTIEEESLFEAA 447
Query: 422 CPEKIVEFEERRALRQPKKSK 442
PE + ++++++ + K K
Sbjct: 448 YPEIVAIYQKQKSENKGTKQK 468
>gi|47077235|dbj|BAD18538.1| unnamed protein product [Homo sapiens]
Length = 908
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 222/503 (44%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAVYQKQKLEIKGKKQK 469
>gi|109658672|gb|AAI17207.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
Length = 908
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 222/503 (44%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAVYQKQKLEIKGKKQK 469
>gi|109658826|gb|AAI17205.1| Gen homolog 1, endonuclease (Drosophila) [Homo sapiens]
gi|313883890|gb|ADR83431.1| Gen homolog 1, endonuclease (Drosophila) (GEN1), transcript variant
2 [synthetic construct]
Length = 908
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 222/503 (44%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAVYQKQKLEIKGKKQK 469
>gi|395828598|ref|XP_003787457.1| PREDICTED: flap endonuclease GEN homolog 1 [Otolemur garnettii]
Length = 884
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/626 (24%), Positives = 265/626 (42%), Gaps = 124/626 (19%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH+L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLHNLSGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-----SGSEVTQDDKNLDKMSSLRRNMG 115
+ L+ +N L+FV +G P +K ++R SG +Q +
Sbjct: 60 ISYLMQMNVKLVFVMEGEPPKLKADVMKKRNEIRYGPSGKTWSQ------------KTGR 107
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSLLKECLEMLECLGIPWVQAAGEAEAMCAHLNAGGHVDGCLTNDGDAFLYGAQTVY 167
Query: 176 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 233
++ + + +V CY M ++ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 168 KNFTMNTKDPHVDCYTMSSVKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 234 SVGDNVVLQRIAS-----------------------------------EGLSFVKRAKNS 258
+ +LQR G +
Sbjct: 228 ILKGQSLLQRFNQWKETSYNSNPQPLVAKKPAHCSVCSHPGSPKDHERNGCRLCNSDRYC 287
Query: 259 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 312
+ + ++C + E ++G +++++++ PF +VI + + +
Sbjct: 288 EPHDYEYRCPCEWHLTEHERQLSGVENNIKKKACSYEGFPFHEVIQE------FLLNKDK 341
Query: 313 VHRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANT 365
+ +V+ LFQ L ++ +WP E +L + D+ R+ ++
Sbjct: 342 LAKVIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRSSDQ 396
Query: 366 LALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS------SVVPADL 417
L T I+K+R G CFE+ WE E Y ++ ++ L
Sbjct: 397 LQ---------------PTRIVKTRIRNGVHCFEIEWEKPEHYAIEEPGESILTIEEESL 441
Query: 418 IESACPEKIVEFEERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENS-TSSNASFSSR 476
E+A PE + +++++ EI K Q M + EN+ S+ S +
Sbjct: 442 FEAAYPEIVAIYQKQK--------------LEIKGKKQKSMKIMPKENNLPESDNVMSFQ 487
Query: 477 VVMSEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSPVQCRN 536
M T ++ + + L+ E +N + P T+A + L SP + +
Sbjct: 488 SCM----TLKPTCEIFPKPNSKLNMEISANPTL---PQECTSASLNSLLLPEDSPCEEQF 540
Query: 537 VSRIREMSDQPINTIELSDSETEKSP 562
+S R ++ Q I + S + P
Sbjct: 541 MSSPRPLTTQQITAVNESLTSEHNQP 566
>gi|355565476|gb|EHH21905.1| hypothetical protein EGK_05073 [Macaca mulatta]
Length = 907
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 222/493 (45%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSFKCNNKE-ESLNQ 276
+LQR + + L K A K+ ++ G ++K E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCISDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQ--- 333
E H + + S+V + C S + H V+ + L +L +V
Sbjct: 293 EYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 334 ---FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
FQ WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAIY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|383418083|gb|AFH32255.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
gi|383418085|gb|AFH32256.1| flap endonuclease GEN homolog 1 [Macaca mulatta]
Length = 907
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 221/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLSNLGGKTIAVDLSLWVCEAQTVKKMMG-SVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQ 276
+LQR + + L K A K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C S + H V+ + L +L +V
Sbjct: 293 EYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAIY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|109102065|ref|XP_001092423.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Macaca
mulatta]
gi|109102069|ref|XP_001092651.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 4 [Macaca
mulatta]
Length = 907
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/493 (27%), Positives = 221/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQ 276
+LQR + + L K A K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C S + H V+ + L +L +V
Sbjct: 293 EYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAIY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|355751124|gb|EHH55379.1| hypothetical protein EGM_04579 [Macaca fascicularis]
Length = 907
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/493 (27%), Positives = 221/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI----------ASEGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQ 276
+LQR + + L K A K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQ--- 333
E H + + S+V + C S + H V+ + L +L +V
Sbjct: 293 EYCCPCDWHRTEHDRQLSEVENNMKKKAC-SCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 334 ---FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
FQ WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAIY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>gi|332253767|ref|XP_003276003.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Nomascus
leucogenys]
gi|332253769|ref|XP_003276004.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Nomascus
leucogenys]
Length = 907
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 224/503 (44%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q+V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQSVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F+
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFTS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN +GC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVNGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHCTEHDRQLNEVENNIKKKACSCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 TYRRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAVYQKQKLEIKGKKQK 469
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 142/253 (56%), Gaps = 20/253 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK+LW+IL + PL LQ K + IDLSCW+V Q+V + K+ LR LF R
Sbjct: 1 MGVKDLWNILSPLSERKPLFELQGKAIAIDLSCWVVDSQSVTDNI--AQPKMHLRNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
+ + +FV +G+ P +K +T +R + G E+ + +K + S F
Sbjct: 59 TSYFLLHDIFPVFVLEGAAPTLKHNTIAKRNDIRHGREIKKTNKKAGR---------SRF 109
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ ++KE + + +G+ C++G EAEA CA LN + L DGC S DSD L+GA+ VYR+
Sbjct: 110 NYVLKECEEMLKYMGLTCVKGYGEAEAMCAYLNEDGLVDGCISQDSDCLLYGAKIVYRNF 169
Query: 179 WL---GER----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
G R G + Y M+ I++ GRN +I LAL+ G DY +G+ G+G E+A ++
Sbjct: 170 CTSTQGNRTTSSGSIDEYSMEKIQQVFNLGRNKMIALALMCGCDYDEGLSGVGKEAALKL 229
Query: 232 VKSVGDNVVLQRI 244
K V D+ +L R+
Sbjct: 230 FKIVDDDEILYRM 242
>gi|403288138|ref|XP_003935270.1| PREDICTED: flap endonuclease GEN homolog 1 [Saimiri boliviensis
boliviensis]
Length = 909
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 162/642 (25%), Positives = 278/642 (43%), Gaps = 115/642 (17%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L + + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGQTLAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAVGCVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + ++ +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKACGCEGFPFQEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMTERKLGRRHSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEEALFE 446
Query: 420 SACPEKIVEFEERRALRQPKKS---KPK-SSAAEID--QKLQALML-----DIESENSTS 468
+A PE + +++++ + KK KPK ++ E D Q+LM +I + ++
Sbjct: 447 AAYPEIVAIYQKQKLEIKGKKQKSIKPKENNLPEPDDVMSFQSLMTLKPTSEIFHKQNSK 506
Query: 469 SNASFSSRVVM-SEDWTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLV 527
N S + E +A+ L + L+A+ + + S P KA L+
Sbjct: 507 LNLGISPEPTLPQESISASLHSLLLPKNAPCLNAQEQFMS--SSRPLAIQQIKAVTESLI 564
Query: 528 SPSP---VQCRNVSRIREMSDQPINTIELSDSETEKSPELER 566
S S C N+S I +D ++TI+ + SPE++R
Sbjct: 565 SESSQPGTSCHNISMI---TDLHLSTIDWEGTSFSNSPEIQR 603
>gi|426223166|ref|XP_004005748.1| PREDICTED: flap endonuclease GEN homolog 1 [Ovis aries]
Length = 931
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 214/492 (43%), Gaps = 74/492 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH L K + +DLS W+ + Q V K K LR LF R
Sbjct: 21 MGVNDLWQILEPVKQHIHLHSLSGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 79
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + ++ S F
Sbjct: 80 ISYLTLMDVKLVFVMEGEPPHLKADVISKR-------NQVRYGPSGKTWSQKTGRSHFKS 132
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 133 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDTFLYGAQTVYRNFTM 192
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A +++K +
Sbjct: 193 NTKDPHVDCYTMSSIKTKLGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIKILKGQ 252
Query: 239 VVLQRI----------ASEGLSFVKRAK-------NSKKEGWSFKC-----NNKEESLNQ 276
+LQR S+ + K A S K+ C + E +
Sbjct: 253 SLLQRFNQWNEKSCYSNSQPVLVNKLAHCSVCSHPGSSKDHERIGCKLCQTDRYCEPHDY 312
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARL--------- 327
E H + E S + + C S + H V + L +L
Sbjct: 313 EYCCPCEWHRAEHERQLSTIENNIKKKAC-SCEGFPFHEVTQEFLLNKDKLMKAIRYQRP 371
Query: 328 -----HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ + +WP E +L + D+ R+ +N L P++
Sbjct: 372 DLLLFQRFTLEKMEWPNHYACEKLLTLLTHYDMTERKLGRRNSNQLQ----------PIR 421
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKIVEFE 430
I+K+R G CFE+ WE E Y + +V L E+A PE + ++
Sbjct: 422 -----IVKNRIRNGVHCFEIEWEKPEHYATEDKHGELALQTVEEESLFEAAYPEIVAIYQ 476
Query: 431 ERRALRQPKKSK 442
++++ + KK K
Sbjct: 477 KQKSENKGKKQK 488
>gi|402890148|ref|XP_003908353.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 1 [Papio anubis]
gi|402890150|ref|XP_003908354.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 2 [Papio anubis]
gi|402890152|ref|XP_003908355.1| PREDICTED: flap endonuclease GEN homolog 1 isoform 3 [Papio anubis]
Length = 906
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 221/503 (43%), Gaps = 95/503 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSTIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+LQR G K K + +
Sbjct: 233 SLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + +N +++++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCDWHRTEHDRQLNEVENNMKKKACSCEGFPFHEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGSRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIE 419
P++ I+K+R G CFE+ WE E Y ++ ++ L E
Sbjct: 399 -------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFE 446
Query: 420 SACPEKIVEFEERRALRQPKKSK 442
+A PE + +++++ + KK K
Sbjct: 447 AAYPEIVAIYQKQKLEIKGKKQK 469
>gi|157821963|ref|NP_001100187.1| flap endonuclease GEN homolog 1 [Rattus norvegicus]
gi|149050926|gb|EDM03099.1| similar to RIKEN cDNA 5830483C08 gene (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 908
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 159/644 (24%), Positives = 275/644 (42%), Gaps = 118/644 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLCGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPKLKADVMNKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTVSSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQILKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G + K + + +
Sbjct: 233 SLLQRFNQWTEEPGYSVPQSAAKKVVHCSVCSHPGSPKDHERNGCTLCKSDRYCEPHDYE 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +N +++++++ PF +VI + + K +++L
Sbjct: 293 YLCPCEWHQTDHNRQLNEIENNIKKKACSCEGFPFHEVIQEFLSNK---------NKLLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PIRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKLGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRIRNGVCCLEIEWEKPEHYSVEDTQPGGLDLLTIEEASLFEAAY 448
Query: 423 PEKIVEFEERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSED 482
PE + ++++++ + KK K I K + L ES++ SS + + +
Sbjct: 449 PEVVAIYQKQQSETKGKKQK------NIKIKPKGSHLP-ESDDVISSQSLITLEPISKAF 501
Query: 483 WTAATEIDLTRRQDLLLDAESKSNANMSCYPTGSTAAKAEIIDLVSPSP-----VQCRNV 537
+ DL D +L ES S ++S + + A + + + PSP Q ++V
Sbjct: 502 PKQNPKFDLEISPDPILAQESTS-PSLSSFVSPENALGLNLQEQLMPSPRTLAVKQTKDV 560
Query: 538 S---------------RIREMSDQPINTIELSDSETEKSPELER 566
S I ++D ++TI+ + + SP ++R
Sbjct: 561 SNFLVSECSQPSSSSHNISVITDLHLSTIDWAGTSFSNSPAVQR 604
>gi|311253092|ref|XP_003125389.1| PREDICTED: flap endonuclease GEN homolog 1 [Sus scrofa]
Length = 906
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 133/500 (26%), Positives = 218/500 (43%), Gaps = 90/500 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW +LE K+ + L+ L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQVLEPVKQHIHLNSLAGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + + S F
Sbjct: 60 ISCLTLMDVKLVFVMEGEPPKLKADVINKR-------NQIRYGPSGKTWSHKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNANGCVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ LG R+SL+ LA+LLG DY +GV G+G E A +++K++
Sbjct: 173 NTKDPHVDCYTMSSIKNILGLDRDSLVGLAILLGCDYLPKGVPGVGKEQALKLIKTLKGQ 232
Query: 239 VVLQRIAS-----------------------------------EGLSFVKRAKNSKKEGW 263
+LQR G K + + +
Sbjct: 233 SLLQRFNQWIEESYSSNSQPLVVNKLAHCSVCSHPGSPRDHERHGCKLCKTDRFCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSAD---SEAVH 314
+ C + +N ++S++++ PF +VI + S D E +
Sbjct: 293 EYSCPCEWHQTECGRQLNAVENSIKKKACSCEGFPFHEVIQEF----LLSKDKLVKEIRY 348
Query: 315 RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDL 372
R LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 349 RRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRNSNQLQ----- 398
Query: 373 PLQKVPVKCPITGIIKSRKLQGKECFEVSW--------EESYG--LKSSVVPADLIESAC 422
P++ I+K+R G CFE+ W E+ YG + ++ L E+A
Sbjct: 399 -----PIR-----IVKTRIRNGVRCFEIEWEKPEHYTTEDEYGELVLQTIEEESLFEAAY 448
Query: 423 PEKIVEFEERRALRQPKKSK 442
PE + ++++++ + KK K
Sbjct: 449 PEIVAIYQKQKSEIKGKKQK 468
>gi|73980577|ref|XP_540093.2| PREDICTED: flap endonuclease GEN homolog 1 [Canis lupus familiaris]
Length = 908
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 210/481 (43%), Gaps = 73/481 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LHHL K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLHHLCGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K RR Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPKLKADVISRR-------NQIRYGPSGKTWSQKAGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRIAS---------EGLSFVKRA-----------KNSKKEGWSF-KCNNKEESLNQE 277
+LQR + L+ K A K+ + G K N E + E
Sbjct: 233 SLLQRFTQWSEESCSDPQPLAIKKLAHCSVCSHPGSPKDHVRNGCKLCKTNRYCEPHDYE 292
Query: 278 INVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQ---- 333
H Q E V + C S + + V + L +L +V
Sbjct: 293 YCCPCDWHRTQHERQLIAVENNIKKKAC-SCEGFPFYEVTQEFLLNKDKLVKVIRYQRPD 351
Query: 334 --FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVKC 381
FQ WP E +L + D+ R+ +N L P++
Sbjct: 352 LLLFQRFTLEKMEWPDHYACEKLLVLLTHYDMIERKLGRRNSNQLQ----------PIR- 400
Query: 382 PITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESACPEKIVEFEE 431
I+KSR G CFE+ WE E Y ++ ++ L E+A PE + +++
Sbjct: 401 ----IVKSRIRNGIHCFEIEWEKPEHYAIEDQHGELVLQTIEEKSLFEAAYPEIVAVYQK 456
Query: 432 R 432
+
Sbjct: 457 Q 457
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/502 (26%), Positives = 225/502 (44%), Gaps = 84/502 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW I+E ++++PL+ L K + +DLS W+ + Q+V ++ + +K LR LF R
Sbjct: 1 MGVHELWSIIEPVRESVPLYSLSGKTLAVDLSLWVCEAQHV-QAMMGRVNKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ +L + L+FV +G P IK T +R K SS F
Sbjct: 60 VSSLTLMGIKLVFVMEGEAPKIKAETMSKR------TLARYGGFKKTSSTTSTGRGRFKA 113
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LGVP + EAEA CA L+ + L DGC ++D D FL+GA+ VYR+
Sbjct: 114 VLKECADMLDILGVPWVTAAGEAEAMCAFLDSQGLVDGCITNDGDAFLYGAQIVYRNFHT 173
Query: 181 GERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY+ ++ +L R +L+ LA+LLG DY +G+ G+G E A ++++ + +
Sbjct: 174 NSKDPLVDCYKTSRVQTELHLSRENLVGLAVLLGCDYIPKGIPGVGKEQALKLLRMLKEQ 233
Query: 239 ------------------VVLQRIAS---------------EGLSFVKRAKNSKKEGWSF 265
VVL+++A G K + + + +
Sbjct: 234 TLLQWFTQWEEQNSGTPEVVLKKVAHCPVCHHPGSAKAHERGGCVLCKSNRFCHPQDFDY 293
Query: 266 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAY--SNPKCYSADSEAVHRVL 317
+C + V+ + +++++T PF+++I + S K S +L
Sbjct: 294 ECPCDWHRYERTRQVSSFETNIRKKTMASPHFPFTKIISEFLISKDKPVSHFKRRQPNML 353
Query: 318 AQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKV 377
+ F H ++ +WP T E +L L +A L G D+ Q
Sbjct: 354 SMQKFAHEKM--------EWPKHYTSEKVL------VLLTYAELMNKKY--GRDVSTQIK 397
Query: 378 PVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS-----------SVVPADLIESACPE 424
P++ I+KSR G CFE+ W E Y ++ A L A PE
Sbjct: 398 PLR-----ILKSRVRNGVPCFEIVWRTPEHYSFPDQQPAEDHHEVRTIEEATLFRVAFPE 452
Query: 425 KIVEFEERRALRQPKKSKPKSS 446
+ ++ + +++ + KK++ K S
Sbjct: 453 VVEKYLKDKSMAEGKKTRSKKS 474
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 138/252 (54%), Gaps = 23/252 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQN-VNKSYRPQTDKLFLRGLFH 59
MGVK+LW++L + PL+ LQ K + IDLS WIV Q V+ +P +++LR L+
Sbjct: 1 MGVKDLWNVLSPLCEKKPLYELQGKTIAIDLSGWIVDSQTIVDNMVQP---RMYLRNLYF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
+ + +FV +G P +K T RR + S + + ++ ++F+
Sbjct: 58 LVHGIFP-----VFVLEGKPPILKHKTIARRNDVRSR-------FQERKTAKKGGRTQFN 105
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++ E K L +GV C++ EAEA CA LN + L DGC S DSD FL+GA+ VYR+
Sbjct: 106 RVLNECKELLRYMGVACVQSYGEAEAMCAYLNEDGLVDGCISQDSDCFLYGAKVVYRNFC 165
Query: 180 LGERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ G V Y M+ IE+ L GRN +I LALL G DY +GV G+G E+ +
Sbjct: 166 MSTHGNCGATGGSVDVYSMEKIEKTLNIGRNKMIALALLCGCDYDEGVNGVGKEATLKFF 225
Query: 233 KSVGDNVVLQRI 244
K+V + VLQRI
Sbjct: 226 KTVKEENVLQRI 237
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 206/447 (46%), Gaps = 69/447 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV NLW +LE + L L+ + + +DLS W+ + Q V K + K +LR LF R
Sbjct: 1 MGVTNLWQVLEPVQAHQTLSSLKGQTLAVDLSIWVCETQCV-KQMQGVVSKPYLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L+ L L+FV +G P +K +R + Q + RRN F+
Sbjct: 60 ISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQET--RFPQRKAVGGQRQGGRRN----FNA 113
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+KE + LGVP + EAEA CA LN + D C ++D D FL+GARTVYR+ +
Sbjct: 114 CLKECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDAFLYGARTVYRNFTM 173
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M D+E +LG R L+ +ALLLG DY +GV G+G E A +++ ++ +
Sbjct: 174 NTKDPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPGVGVERAIKMMNALPSS 233
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
VL+R E WS S+ + V+ + ++R+ VI
Sbjct: 234 NVLKRF----------------ETWS--------SMPESCCVDTVEVYIRRKALL--VIQ 267
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAER 353
+ K + +H+ + R L C +WP E T E +LP I
Sbjct: 268 EFFQEK----------KKTPRHISEWCRPSMSKLQVFCLNKLEWPVEYTVEKVLPLITLW 317
Query: 354 DLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSW---EESYGLKS 410
D+ ++L ++T L VP + I+KSR G C+E+ W E G+
Sbjct: 318 DM---SDLTSSTPQTDRHL----VPKQ-----IVKSRVRHGVACYEILWNQPESDSGVSG 365
Query: 411 SVV----PADLIESACPEKIVEFEERR 433
V L S+ P+ + +F++ +
Sbjct: 366 DVYRTIEEQVLFRSSYPQIVAQFDKEQ 392
>gi|149728133|ref|XP_001503466.1| PREDICTED: flap endonuclease GEN homolog 1 [Equus caballus]
Length = 908
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/502 (25%), Positives = 219/502 (43%), Gaps = 94/502 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLHGLAGKTIAVDLSLWVCEAQTVKKMIG-TVLKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPKLKADVISKR-------NQIRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI-----------------------------------ASEGLSFVKRAKNSKKEGW 263
+L+R G K + + +
Sbjct: 233 SLLERFNQWNEKSGYSNPQPQVIKKLAHCSVCSHPGSPKDHEHNGCKLCKTDRYCEPHDY 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + + +N ++ ++++ PF +VI + + + + +V+
Sbjct: 293 EYCCPCEWHRTEHDRQLNAVENGIKKKACSCEGFPFPEVIQE------FLLNKDKLVKVI 346
Query: 318 AQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 347 RYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGRRNSNQLQ--- 398
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIES 420
P++ I+K+R G CFEV WE E Y ++ ++ L E+
Sbjct: 399 -------PIR-----IVKTRVRNGVHCFEVEWEKPEHYAIEDEYGELVLQTIEEKSLFEA 446
Query: 421 ACPEKIVEFEERRALRQPKKSK 442
A PE + +++++ + KK K
Sbjct: 447 AYPEIVAIYQKQKLEIKGKKQK 468
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 48/433 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLW +L + +PL L K + IDLS W+ +N+N + + ++LR LF R
Sbjct: 1 MGVKNLWSLLTPVAEKMPLWELHGKAIAIDLSGWVCDSENLNHNISQKN--MYLRNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L+ + IFV DG P +K ST +R+N +K K + +R+ + S
Sbjct: 59 TCNLLLIGAIPIFVFDGEPPLLKYSTIEKRING-------NKAPIKTNIIRKRLNS---- 107
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+ K+ + L +GV C+ G EAE CA+LN + +G + DSD FL+GAR VYR+
Sbjct: 108 LQKQCELLLNIMGVTCVYGHGEAEQLCAILNKNGIVNGIVTQDSDCFLYGARVVYRNFNA 167
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDNV 239
G V Y M IE+ L GR+ +I L+LL G DY + GV G+G ++A + ++S+ D+
Sbjct: 168 SGNGSVDVYCMGSIEKNLKIGRSKMIALSLLCGCDYDEKGVLGIGKDTAIKFLQSLDDDA 227
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
VL R L + K E L +I ++ + P VI+
Sbjct: 228 VLDR-----LRHWRNDPVLNSAAMDIKSQTNEIKLELKIRNKAIEN---KSFPSEAVIEE 279
Query: 300 Y-SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
+ P C ++ + + F L ++C W E E LP + L
Sbjct: 280 FLKAPNCPEVSAKWILPDINS--FIKFALTKLC-----WEREYAIEKFLPLLTRWHLMYD 332
Query: 359 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
+AN L +T I+K R +G +C+E+ W +Y + +S+ P +
Sbjct: 333 DKFQANIL----------------MTKIVKKRVNKGIKCYEIKW-NNYEI-TSIEPQTAV 374
Query: 419 ESACPEKIVEFEE 431
+ P ++ +E+
Sbjct: 375 QRRYPNEVSIYED 387
>gi|348574836|ref|XP_003473196.1| PREDICTED: flap endonuclease GEN homolog 1-like [Cavia porcellus]
Length = 906
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 147/521 (28%), Positives = 232/521 (44%), Gaps = 65/521 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L +L K + +DLS W+ + Q+V K K LR LF R
Sbjct: 1 MGVNDLWQILEPAKQHIHLQNLSGKTIAVDLSLWVCEAQSVRKMMG-TVRKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L+ ++ L+FV +G P +K +R Q L + +++ S F
Sbjct: 60 ISYLMQMDIKLVFVMEGEPPKLKADVMNKR-------NQIRYGLSGKTWSQKSGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + SLG+P ++ EAEA CA L+ DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLESLGIPWVQAAGEAEAMCAHLDAGGQVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++S+
Sbjct: 173 NPKDPHVDCYTASSIKNKLGLDRDALVALAVLLGCDYLPKGVPGVGREQALKLIQSLKGE 232
Query: 239 VVLQRI---------ASEGLSFVKR------------AKNSKKEG-WSFKCNNKEESLNQ 276
+LQR +S K+ K+ ++ G W + + E +
Sbjct: 233 SLLQRFDQWNEISRHSSLQQQVAKKPAHCSVCAHPGSPKDHERHGCWLCRSDRYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQ--- 333
E H Q+E P +++ K S + H V+ + L +L V
Sbjct: 293 EYRCPCEWH--QKEPPNG--VESSVMRKACSCEGFPFHEVIQEFLLNKDKLVGVIRYQRP 348
Query: 334 ---FFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSR 390
FQ + E+ P E+ L ++ LG Q PV+ I+K R
Sbjct: 349 DLLLFQRFALEKMEWPNPYACEKLLVLLSHYDMIERKLGRRNSKQLQPVR-----IVKPR 403
Query: 391 KLQGKECFEVSWE-------ESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSK- 442
G CFE+ WE E L +V L E+A PE + + + + + KK K
Sbjct: 404 IRNGVHCFEIEWEMPEHFAVEHGELIVTVEVESLFEAAYPEIVAIYRKEKLETKGKKPKN 463
Query: 443 ----------PKSSAAEIDQKLQALMLDIESENSTSSNASF 473
PKS A Q L + L E + ++ SF
Sbjct: 464 MKIKPNKGSFPKSHDAVTLQSLVTVKLTPEIFPAQNTGLSF 504
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 224/511 (43%), Gaps = 97/511 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K + LH L K + +DLS W+ + Q+V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKHPVHLHSLVGKTIAVDLSLWVCEAQSVKKMIG-TVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + + ++ S F
Sbjct: 60 ISYLTLMDVKLVFVMEGEPPELKADVINKR-------NQIRYGPSEKTRSQKTGRSYFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E L +G+P ++ EAEA CA LN DGC + D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDTFLYGAQTVYRNFAM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I +LG R++L+ LA+LLG DY +GV G+G E A +++ +
Sbjct: 173 TSKDPHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGVGKEQALKLIHILKGQ 232
Query: 239 VVLQRIAS-----------------------------------EGLSFVKRAKNSKKEGW 263
+LQR G + ++ + G
Sbjct: 233 SLLQRFMQWNETSCSSNEQPVTVKKLAHCSVCSHPGSLKAHERNGCELCQTERHCEPHGN 292
Query: 264 SFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVL 317
+ C + E + +++++++ PF +VI + S + V +
Sbjct: 293 EYCCPCEWHCAEHERQLIAVENNIKKKACSCEGFPFHEVIQEF-----LSNKDKLVQAIR 347
Query: 318 AQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVD 371
Q LFQ L ++ +WP E +L + D+ R+ AN L
Sbjct: 348 CQRPNLLLFQKFSLEKM-----EWPNHYACEKLLVLLTHYDMTERKLGRRNANQLQ---- 398
Query: 372 LPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIESA 421
P++ I+K++ G CF++ WE E Y ++ ++ L E+A
Sbjct: 399 ------PIR-----IVKNQIRNGVRCFQIEWEKPEHYDIEDKHGESVLQTIEEESLFEAA 447
Query: 422 CPEKIVEFEERR-----ALRQPKKSKPKSSA 447
PE + +++++ ++ +K+KPK+++
Sbjct: 448 YPEIVAVYQKQKLEMKEKKQKSRKTKPKANS 478
>gi|344280345|ref|XP_003411944.1| PREDICTED: flap endonuclease GEN homolog 1 [Loxodonta africana]
Length = 739
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 219/498 (43%), Gaps = 85/498 (17%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +H L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKEHTHVHSLSGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-----SGSEVTQDDKNLDKMSSLRRNMG 115
+ L ++ L+FV +G P +K +R SG +Q +
Sbjct: 60 ISFLTLMDVKLVFVMEGEPPKLKADVISKRNQIRYGPSGKTWSQ------------KTGR 107
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
S F +++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVY
Sbjct: 108 SHFKSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNANGYVDGCLTNDGDAFLYGAQTVY 167
Query: 176 RDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVK 233
R+ + + +V CY M I+ KLG R++L+ +A+LLG DY +GV G+G E A ++++
Sbjct: 168 RNFTMNTKDPHVDCYTMSSIKSKLGLDRDALVGVAILLGCDYLPKGVPGVGKEQALKLIQ 227
Query: 234 SVGDNVVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKE 271
++ +LQR + + VK+ K+ ++ G K +
Sbjct: 228 TLRGQSLLQRFNQWNEKSCYSDTQIQVVKKLAHCSVCSHPGSPKDHERNGCKLCKSDRYC 287
Query: 272 ESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVC 331
E + E H ++R+ + V + C S + H V+ + L +L +V
Sbjct: 288 EPHDYEYCCPCEWHRMERDRQLNAVENNIKKKAC-SCEGFPFHEVIQEFLLNKNKLLKVI 346
Query: 332 AQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQ 375
FQ WP E +L + D+ R+ N L
Sbjct: 347 RYQRPDLLLFQRFTFEKMEWPNHYACEKLLVLLTHYDMMERKLGRRSCNQLQ-------- 398
Query: 376 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK---------SSVVPADLIESACPE 424
P++ I+K+R G CFE+ WE + Y + ++ L E+A PE
Sbjct: 399 --PIR-----IVKTRIRNGVHCFEIEWEKPDHYATEDKEHEELILQTIEEESLFEAAYPE 451
Query: 425 KIVEFEERRALRQPKKSK 442
+ +++++ + KK K
Sbjct: 452 IVAIYQKQKLEIKGKKQK 469
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 138/248 (55%), Gaps = 16/248 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +LE K PL L+ + + +DLS WI + +++P LR LF+R
Sbjct: 1 MGVKTLWVVLEPVKDPTPLEDLKGQTIAVDLSSWICESIAAVNAFKPH-----LRNLFYR 55
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL--DKMSSLRRNMGSEF 118
+ L LN +FV DG P +K + +R + + D KN +K ++R +
Sbjct: 56 VVNLSRLNIQPVFVIDGDPPELKSNELVKR----AHIQGDSKNKHGEKKPGMQR---TRL 108
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ E L LGVP ++ EAEA CALLN E L DG F+ D D FL+GA+ VY+++
Sbjct: 109 KTLQYECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDAFLYGAKKVYKNL 168
Query: 179 WLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVG 236
G G +V Y+M DIE KL RN LI +ALL+G DY S GV +G +A Q++ S+G
Sbjct: 169 TAGSNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSVGKTNATQLMHSLG 228
Query: 237 DNVVLQRI 244
D VL+R
Sbjct: 229 DIDVLERF 236
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 10/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV NLW ILE ++ + L L+ K + +DLS W+ + Q V K T K LR LF R
Sbjct: 1 MGVNNLWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVT-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
++ L+FV +G P +K T +R +E+ N ++ R S F
Sbjct: 60 YSFFTSMGIKLVFVMEGEAPKLKADTMSKR----NEIRYGASNKHGVARTGR---SSFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE L LGVP ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ +
Sbjct: 113 ILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAM 172
Query: 181 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ ++ CY M I+ KLG R SLI LA+LLG DY +G+ G+G E A ++++++
Sbjct: 173 NSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGIPGVGKEQALKLIETLRGQ 232
Query: 239 VVLQRI 244
+LQR
Sbjct: 233 NLLQRF 238
>gi|326916541|ref|XP_003204565.1| PREDICTED: flap endonuclease GEN homolog 1-like, partial [Meleagris
gallopavo]
Length = 897
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 138/246 (56%), Gaps = 10/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV NLW ILE ++ + L L+ K + +DLS W+ + Q V K T K LR LF R
Sbjct: 1 MGVTNLWQILEPVRQPVSLSSLKGKTLAVDLSLWVCEAQTVKKMIGVVT-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
++ L+FV +G P +K T +R +E+ N + R++ F
Sbjct: 60 YSFFTSMGIKLVFVMEGEAPKLKADTMSKR----NEMRYGASNKHGAARTGRSL---FKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE L LGVP ++ EAEA CA LN + DGC ++D D+FL+GA+TVYR+ +
Sbjct: 113 ILKECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAQTVYRNFAM 172
Query: 181 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ ++ CY M I+ KLG R SLI LA+LLG DY +GV G+G E A ++++++
Sbjct: 173 NSKEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLRGQ 232
Query: 239 VVLQRI 244
+LQR
Sbjct: 233 NLLQRF 238
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 197/463 (42%), Gaps = 75/463 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVN-KSYRPQTDKLFLRGLFH 59
MGV+NLW IL K + L+ K++ +DL+ W+V+ Q K + + K LR LF
Sbjct: 1 MGVQNLWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLFF 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR-------------------LNSGSEVTQD 100
R + L L+FV DG+ P +K RR G +
Sbjct: 61 RASNFLRLGVKLVFVIDGTPPELKWEEIARRNEVRLGGGGGGARGGGGGWRGGGRGGWRG 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+R+ S FS +KE + L +GVPC++ EAEA CA LN + DGC
Sbjct: 121 RGRGGGGGGVRKASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAALNSAGIVDGCM 180
Query: 161 SSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQG 219
+ D D FL+GAR VYR++ + G V CY MDDIE KL R L+ LA+LLG DY +G
Sbjct: 181 TEDGDAFLYGARIVYRNLNMAT-GKVDCYRMDDIETKLDLDRGRLVALAILLGCDYLPKG 239
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC--NNKEESLNQE 277
V G+G E A + +KS+ +V + L+ + + G + C N + + +
Sbjct: 240 VPGVGKEVAMRFMKSLPSSV-------DPLNLFQDWRG----GCASACLTNEERDVRKKS 288
Query: 278 INVNGTDHSLQRETPFSQVIDAY-SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQ 336
+ V G P VI + N + R L HL Q + +
Sbjct: 289 VRVEG--------FPNQDVIQEFLRNKERPPTHHSEWRRPLLLHLQQFNLVK------ME 334
Query: 337 WPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKE 396
WP E T E ++P + DL + L ++K R QG
Sbjct: 335 WPIEYTQEKVVPLMTLYDLTHMTSDPKGRLTPA---------------SVVKLRVRQGVP 379
Query: 397 CFEVSW----------EESYGLKSSVVPADLIESACPEKIVEF 429
C EV W E+ ++V +L SA P+ + +F
Sbjct: 380 CAEVKWHKPEEDKENDEDCEPFYTTVEERELFTSAYPDVMEQF 422
>gi|148540148|ref|NP_796305.3| flap endonuclease GEN homolog 1 [Mus musculus]
gi|166221585|sp|Q8BMI4.2|GEN_MOUSE RecName: Full=Flap endonuclease GEN homolog 1
gi|60334795|gb|AAH90653.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957028|gb|AAI38159.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
gi|187957572|gb|AAI38158.1| Gen homolog 1, endonuclease (Drosophila) [Mus musculus]
Length = 908
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 95/509 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIG-TVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G K K + +
Sbjct: 233 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +++ +++++++ PF +VI + K +++L
Sbjct: 293 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAY 448
Query: 423 PEKIVEFE----ERRALRQPK-KSKPKSS 446
P+ + ++ E + +Q K+KPK S
Sbjct: 449 PDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|26326927|dbj|BAC27207.1| unnamed protein product [Mus musculus]
Length = 908
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 95/509 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIG-TVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G K K + +
Sbjct: 233 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +++ +++++++ PF +VI + K +++L
Sbjct: 293 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAY 448
Query: 423 PEKIVEFE----ERRALRQPK-KSKPKSS 446
P+ + ++ E + +Q K+KPK S
Sbjct: 449 PDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|148666016|gb|EDK98432.1| RIKEN cDNA 5830483C08 [Mus musculus]
Length = 908
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 95/509 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIG-TVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G K K + +
Sbjct: 233 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +++ +++++++ PF +VI + K +++L
Sbjct: 293 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGELSLLTMEEASLFEAAY 448
Query: 423 PEKIVEFE----ERRALRQPK-KSKPKSS 446
P+ + ++ E + +Q K+KPK S
Sbjct: 449 PDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|26326997|dbj|BAC27242.1| unnamed protein product [Mus musculus]
Length = 908
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 95/509 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIG-TIKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G K K + +
Sbjct: 233 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +++ +++++++ PF +VI + K +++L
Sbjct: 293 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAY 448
Query: 423 PEKIVEFE----ERRALRQPK-KSKPKSS 446
P+ + ++ E + +Q K+KPK S
Sbjct: 449 PDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>gi|270011949|gb|EFA08397.1| hypothetical protein TcasGA2_TC006044 [Tribolium castaneum]
Length = 591
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 15/253 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG+K+LW +L + PL+ LQ K V IDLSCW+ + QNV + Y Q +++LR L+ R
Sbjct: 1 MGIKDLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTE-YTVQP-RMYLRNLYFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L+ ++ ++FV +G P +K T R N+ KN K R F+
Sbjct: 59 TCYLLLMDVNVVFVLEGRAPELKYKTIAAR-NALQFKGAKPKNGAKTKDRSR-----FNH 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+K + + LG+ C+ G EAEA CA LN L DG S DSD F +GAR VYR+ +
Sbjct: 113 TLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVYRNFSI 172
Query: 181 GER-------GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
++ G V Y++ +L FGRN +I LALL GSDYS GV G+G +S +
Sbjct: 173 SQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVHGIGKDSVVKFFN 232
Query: 234 SVGDNVVLQRIAS 246
V D+ +LQR+ S
Sbjct: 233 LVKDDEILQRLRS 245
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 212/493 (43%), Gaps = 86/493 (17%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIG-TVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ LI +N L+FV +G P +K +R TQ ++ S F
Sbjct: 60 ISYLIQMNVKLVFVMEGEPPKLKADVISKR-------TQTRYGPSGKPCSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+ VYR+ +
Sbjct: 113 VLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLRILKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G +F K + + +
Sbjct: 233 SLLQRFNQWIEEPCSSIPQPAAKNVAHCSVCSHPGSPKDHERNGCTFCKSDRYCEPHDYE 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + +N +++++++ PF +VI + K ++L
Sbjct: 293 YLCPCEWHQTKHNRQLNEIENNIKKKACSCKGFPFHEVIQEFLLNK---------DKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQ 375
+Q L + Q +WP E +L + D+ R N+ L
Sbjct: 344 PIRYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMTERKLGRKNSGQLQ------ 397
Query: 376 KVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPE 424
P++ I++ R C E+ WE E Y ++ +V A L E+A PE
Sbjct: 398 --PIR-----IVRPRIRNRVRCLEIEWEKPEHYAMEDTEAGELDLLTVEEASLFEAAYPE 450
Query: 425 KIVEFEERRALRQ 437
+ ++++++ Q
Sbjct: 451 VVAIYQKQQSETQ 463
>gi|189239788|ref|XP_969346.2| PREDICTED: similar to XPG-like endonuclease CG10670-PA [Tribolium
castaneum]
Length = 565
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 15/253 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG+K+LW +L + PL+ LQ K V IDLSCW+ + QNV + Y Q +++LR L+ R
Sbjct: 1 MGIKDLWTLLAPFGERKPLYELQGKTVAIDLSCWVCESQNVTE-YTVQP-RMYLRNLYFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L+ ++ ++FV +G P +K T R N+ KN K R F+
Sbjct: 59 TCYLLLMDVNVVFVLEGRAPELKYKTIAAR-NALQFKGAKPKNGAKTKDRSR-----FNH 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+K + + LG+ C+ G EAEA CA LN L DG S DSD F +GAR VYR+ +
Sbjct: 113 TLKRCEEMLSLLGLACVTGEGEAEALCAQLNETGLVDGIISQDSDCFAYGARVVYRNFSI 172
Query: 181 GER-------GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
++ G V Y++ +L FGRN +I LALL GSDYS GV G+G +S +
Sbjct: 173 SQQGNQAAKGGSVDVYDISVANERLNFGRNKIIALALLCGSDYSDGVHGIGKDSVVKFFN 232
Query: 234 SVGDNVVLQRIAS 246
V D+ +LQR+ S
Sbjct: 233 LVKDDEILQRLRS 245
>gi|291387124|ref|XP_002710085.1| PREDICTED: Gen homolog 1, endonuclease [Oryctolagus cuniculus]
Length = 904
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 133/505 (26%), Positives = 224/505 (44%), Gaps = 100/505 (19%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLGGKTIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIK--LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG-SE 117
+ L+ ++ L+FV +G P +K + + R ++ GS +L + G S
Sbjct: 60 ISYLMQMDVKLVFVMEGEPPKLKADVISKRNQIRYGSS----------GKTLSQQTGRSH 109
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F +++E L LG+P ++ EAEA CA LN E DGC ++D D FL+GA+TVYR+
Sbjct: 110 FKLVLRECLDLLDCLGIPWVQAAGEAEAMCAYLNAEGYVDGCLTNDGDAFLYGAQTVYRN 169
Query: 178 IWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 235
+ + +V CY M I+ +LG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 170 FTMNVKDPHVDCYSMSSIKVQLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQIL 229
Query: 236 GDNVVLQRIAS----------------------------------EGLSFVKRAKNSKKE 261
+LQR G K + +
Sbjct: 230 KGQSLLQRFDQWNEKSHSNPQPAVTKKLAHCSVCSHPGSPKDHERSGCRLCKSNRYCEPH 289
Query: 262 GWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHR 315
+ + C + + G + +++++ PF +VI + + + + +
Sbjct: 290 DYEYCCPCEWHQTECNRRLTGVEDNIKKKACRCEGFPFQEVIQE------FLLNKDKLVK 343
Query: 316 VLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLAL 368
V+ LFQ L ++ +WP E +L + D+ R+ +N L
Sbjct: 344 VIRYQRPDLLLFQRFTLEKM-----EWPNHYACEKLLVLLTRYDMIERKLGRWNSNQLQ- 397
Query: 369 GVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK---------SSVVPADL 417
P++ I+K+R G CFE+ WE E Y + S++ L
Sbjct: 398 ---------PIR-----IVKNRIRNGINCFEIEWEKPEHYVTEDKQNGQLVLSTIEEESL 443
Query: 418 IESACPEKIVEFEERRALRQPKKSK 442
E+A PE + ++ ++ + KK K
Sbjct: 444 FEAAYPEIVAVYQLQKLEIKGKKQK 468
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 205/448 (45%), Gaps = 76/448 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW I+E ++++ L+ L K + +DLS W+ + Q+V ++ + K LR LF R
Sbjct: 1 MGVHDLWSIVEPVRESVSLYSLSGKTLAVDLSLWVCEAQHV-QAMMGRVTKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ +L + L+FV +G+ P +K T +R + ++ +S R F+
Sbjct: 60 VSSLSLMGIKLVFVMEGTAPKLKAETMSKRTKARYGQFKNPTKCSTNTSRGR-----FNS 114
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE + LGVP + EAEA CA L+ + L DGC ++D D FL+GARTVYR+ +
Sbjct: 115 ILKECAEMLDYLGVPWVMAAGEAEAMCAYLDSQGLVDGCITNDGDAFLYGARTVYRNFNM 174
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ + CY+ ++ +L R +L+ LA+LLG DY +G+ G+G E A ++++++ +
Sbjct: 175 SSKDPQIDCYQTSRVQTELNLSRENLVGLAILLGCDYIPKGIPGVGKEQALRLIQALKGD 234
Query: 239 VVLQRI---------------------------------ASEGLSFVKRAKNSKKEGWSF 265
+LQR +G + + + + +
Sbjct: 235 SLLQRFIQWREENPTVSGVVVKKVPHCNICRHPGSATAHGRQGCRLCNSQQYCQPQDFDY 294
Query: 266 KCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
+C S Q V + +++++T PF+++I+ + S D H
Sbjct: 295 QCPCDWHSHEQTHQVVSFEANIKKKTLCSPQFPFTEIINEF----LVSKDKPVSH----- 345
Query: 320 HLFQHARLHQVCAQFF-----QWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPL 374
F+ + + + Q F +WP T E +L L + L GV +
Sbjct: 346 --FKRRQPNMMMMQKFAYEKMEWPKHYTSEKVLV------LLTYTELMNRKYGTGVSSQI 397
Query: 375 QKVPVKCPITGIIKSRKLQGKECFEVSW 402
+ P++ I+KSR CFEV W
Sbjct: 398 K--PIR-----IVKSRVRNAVACFEVIW 418
>gi|327261246|ref|XP_003215442.1| PREDICTED: flap endonuclease GEN homolog 1-like [Anolis
carolinensis]
Length = 631
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 131/246 (53%), Gaps = 10/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL L+ K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVTSLWQILEPVKEHVPLSSLKGKTLAVDLSLWVCEAQMVKKMMG-IVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L +L + L+FV +G P +K +T +R + + R S
Sbjct: 60 LSSLTLMGIHLVFVMEGDAPKLKANTMEKR-------KEIRFGPSRKPGTTRTGRSHLKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+KE + LGVP ++ EAEA CA LN D C ++D D FL+GA+TVYR+ +
Sbjct: 113 FLKECLEMLECLGVPWVQAAGEAEAMCAYLNSNGYVDACITNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + IE KLG R SLI LA+LLG DY +GV G+G E A +++ ++
Sbjct: 173 NTKDPHVDCYSISAIEEKLGCSRESLIGLAVLLGCDYLPKGVPGVGKEQALRLINTLKGQ 232
Query: 239 VVLQRI 244
+LQR
Sbjct: 233 SLLQRF 238
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 137/253 (54%), Gaps = 16/253 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK+LW+IL + P+ LQ K V ID+S W+V Q V ++ K++LR L+ R
Sbjct: 1 MGVKDLWNILSPLCERKPMFELQGKTVAIDISGWVVDSQTVTDNH--AQPKMYLRNLYFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
L+ +FV +G P +K + +R N + + + + + +
Sbjct: 59 TAFLLMHEIQPVFVLEGKAPDLKHNAIAKRNNIRN-------GFRERKTAGKGRRPQLNR 111
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE K L +G+ C++G EAEA CA LN + L GC S DSD FL+GA+ VYR+
Sbjct: 112 ILKECKELLGYMGLACIQGQGEAEAMCAHLNEDGLVHGCISQDSDCFLYGAKVVYRNFCT 171
Query: 181 -------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
G G V Y ++ IE+ L GRN +I LALL G DY +G+ G+G E+A ++ K
Sbjct: 172 SAQGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALALLCGCDYDEGLNGVGKEAAMKLFK 231
Query: 234 SVGDNVVLQRIAS 246
V D +++R+ S
Sbjct: 232 IVKDEDIIERLKS 244
>gi|395509172|ref|XP_003758878.1| PREDICTED: uncharacterized protein LOC100916082 [Sarcophilus
harrisii]
Length = 978
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 11/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ PL LQ K + +DLS W+ + V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKRHAPLRSLQGKTLAVDLSLWVCEALAVKKMVG-IVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ +L + L+FV +G P +K +R + Q+ + SS F
Sbjct: 60 ISSLTLMEVKLLFVMEGDAPKLKADVMGKRNETRFGAPQNRAHKFTRSS--------FKA 111
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++KE L LGVP ++ EAEA CA L+ DGC + D D FL+GA+TVYR+ +
Sbjct: 112 VLKECLDLLECLGVPWVQASGEAEAMCAYLDAHGYVDGCLTDDGDAFLYGAQTVYRNFTM 171
Query: 181 GER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+R LG R++LI LA+LLG DY +GV G+G E A ++V+S+
Sbjct: 172 NAKDPHVDCYTMSSIKRDLGLDRDTLIGLAVLLGCDYLPKGVPGVGKELALKLVRSLKGQ 231
Query: 239 VVLQRI 244
+LQ+
Sbjct: 232 NLLQKF 237
>gi|410955794|ref|XP_003984535.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Felis catus]
Length = 913
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 211/490 (43%), Gaps = 81/490 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNK--------SYRPQTDKL 52
MGV +LW ILE K+ + LH+L K + +DLS W+ + Q V K R
Sbjct: 1 MGVNDLWQILEPVKQHIHLHNLGGKTIAVDLSLWVCEAQTVKKMIGTVLKPHLRXSKSSX 60
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+ L R+ L ++ L+FV +G P +K RR Q + ++
Sbjct: 61 DINELIFRISYLTLMDVKLVFVMEGEPPKLKADVISRR-------NQTRYGPSGKTWSQK 113
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
S F ++KE + LG+P ++ EAEA CA LN DGC ++D D FL+GA+
Sbjct: 114 TGRSHFKSVLKECLDMLECLGIPWVQAAGEAEAMCAYLNASGYVDGCLTNDGDAFLYGAQ 173
Query: 173 TVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
TVYR+ + + +V CY M I+ KLG R +L+ LA+LLG DY +GV G+G E A +
Sbjct: 174 TVYRNFSMNTKDPHVDCYTMPSIKSKLGLDREALVGLAILLGCDYLPKGVPGVGKEQALK 233
Query: 231 IVKSVGDNVVLQRIA--SEGLSF-------VKR------------AKNSKKEGWSF-KCN 268
+++ + +LQR +E SF +K+ K+ + G K +
Sbjct: 234 LIQILKGQSLLQRFTQWNEKPSFSDPQPVVIKKLAHCSVCSHPGSPKDHVRNGCKLCKTD 293
Query: 269 NKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLH 328
E + E H + + S V ++ C + H V+ + L +L
Sbjct: 294 RYCEPHDYEYCCPCEWHRAEHDRQLSAVENSIKKKAC-GCEGFPFHEVIQEFLLNKDKLV 352
Query: 329 QVCAQ------FFQ--------WPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDL 372
+V FQ WP E +L + D+ R+ +N L
Sbjct: 353 KVIRYQRPDLLLFQRFTLEKMEWPSHYACEKLLVLLTHYDMIERKLGRRNSNQLQ----- 407
Query: 373 PLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESAC 422
P++ I+K+R G C E+ WE E Y ++ ++ L E+A
Sbjct: 408 -----PIR-----IVKTRIRNGIHCLEIEWEKPEHYAMEDKHGELVLKTIEELSLFEAAY 457
Query: 423 PEKIVEFEER 432
PE + ++++
Sbjct: 458 PEIVAVYQKQ 467
>gi|449498163|ref|XP_002196947.2| PREDICTED: flap endonuclease GEN homolog 1 [Taeniopygia guttata]
Length = 617
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 10/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW ILE ++ + + L+ K + +DLS W+ + Q V K T K LR LF R
Sbjct: 1 MGVTYLWQILEPVRQPVNMSSLRGKTLAVDLSLWVCEAQTVKKMVGVVT-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
++ L+FV +G P +K T +R + K + R S F
Sbjct: 60 FSFFTSMGIKLVFVMEGEAPRLKADTMSKR-------NEMRYGPSKKAGAVRTGRSLFKA 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M+KE + LGVP ++ EAEA CA LN + L DGC ++D D+FL+GA+TVYR+ +
Sbjct: 113 MLKECLEMLECLGVPWVQAAGEAEAMCAYLNAKGLVDGCLTNDGDVFLYGAQTVYRNFAM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ ++ Y M I+ KLG R SLI LA+LLG DY +GV G+G E A ++++++
Sbjct: 173 NAKDPHLDSYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLQGE 232
Query: 239 VVLQRI 244
+LQR
Sbjct: 233 NLLQRF 238
>gi|432096863|gb|ELK27441.1| Flap endonuclease GEN like protein 1 [Myotis davidii]
Length = 903
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/493 (25%), Positives = 213/493 (43%), Gaps = 93/493 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K T K LR LF R
Sbjct: 1 MGVSDLWQILEPVKQHIHLSSLGGKTIAVDLSLWVCESQTVKKMIGTVT-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q + ++ S F
Sbjct: 60 ISHLTLMDVKLVFVMEGEPPKLKADVINKR-------NQIRYGPSGKTWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E L LG+P ++ EAEA C+ L+ DGC ++D D FL+GARTVYR+ +
Sbjct: 113 VLRECLELLECLGIPWVQAAGEAEAMCSYLDASGYVDGCLTNDGDAFLYGARTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI------------------------------------ASEGLSFVKRAKNSKKEG 262
+LQR G + + +
Sbjct: 233 SLLQRFIQWSEEKPCNSNQQPLVIKKLAHCSVCSHPGSPKDHEHNGCKLCQTDRYCEPHD 292
Query: 263 WSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRV 316
+ + C+ + Q+ + +++++++ PF +VI + K + V V
Sbjct: 293 YEYCCSCEWHRTEQDRQLMTIENNIKKKACSCEGFPFHEVIQEFLLNK-----DKLVKAV 347
Query: 317 LAQH----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGV 370
Q LFQ L ++ WP E +L + D+ R+ +N L
Sbjct: 348 RYQRPDLLLFQRFTLEKM-----DWPNHYACEKLLVLLTHYDMIERKLGRRHSNQLQ--- 399
Query: 371 DLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLK--------SSVVPADLIES 420
P++ I+K+R G CFE+ WE E Y ++ ++ L E+
Sbjct: 400 -------PIR-----IVKNRIRNGVHCFEIEWEKPEHYAIEDNHGELVLQTIEEESLFEA 447
Query: 421 ACPEKIVEFEERR 433
A PE + + +++
Sbjct: 448 AFPEIVAVYHKQQ 460
>gi|198434339|ref|XP_002124511.1| PREDICTED: similar to Flap endonuclease GEN homolog 1 [Ciona
intestinalis]
Length = 579
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 12/238 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+ LWDIL+ K T L L+++ +DL+ WI + ++V + + K +LR LF R
Sbjct: 1 MGVQGLWDILQEVKTTKKLCDLKDRTYAVDLATWICEAESV-AALKHAIAKPYLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ LIFV+DG P +K T R++ EV Q N+ S R N C
Sbjct: 60 VITFTRNGTRLIFVTDGKAPELKWKTMAHRMDVRQEV-QKGTNVSHGSRSRLNARFNECC 118
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+ + LG+P ++ EAEA CA LN + DGC ++DSD FL+GA++VYR++ +
Sbjct: 119 QLLD------QLGIPWIKSEGEAEATCAALNSVGVVDGCMTNDSDTFLYGAKSVYRNLSM 172
Query: 181 GERGY---VVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 234
V CYE+ DIE KL R SLI L LLLG DYS QGV G+G + A ++ S
Sbjct: 173 TTDRNDIDVECYELCDIESKLQLNRKSLIALGLLLGCDYSPQGVPGVGKKQAIMLLSS 230
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 10/246 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQNLSGKTIAVDLSLWVCEAQTVKKMIG-TVVKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ LI +N L+FV +G P +K +R TQ ++ S F
Sbjct: 60 ISYLIQMNVKLVFVMEGEPPKLKADVISKR-------TQTRYGPSGKPCSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+ VYR+ +
Sbjct: 113 VLRECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQMVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLRILKGQ 232
Query: 239 VVLQRI 244
+LQR
Sbjct: 233 SLLQRF 238
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 174/369 (47%), Gaps = 32/369 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL-QNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+S + + L L+ K + +D+S W+ QL + + S+ L GL+H
Sbjct: 1 MGVHGLWHLLQSTGRPVTLESLEGKVLAVDVSMWMHQLMKGMRDSHGNPVPNAHLIGLYH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
R+ L+ +FV DG +PA+K T ++ + ++ L + + M + +
Sbjct: 61 RICKLLYYRIKPVFVFDGGVPALKKQTTDELIDLQKVLEVENTELHNTRNQQDRMATSLT 120
Query: 120 -CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
M EA+ L G+P + EAEAQCA L+L S +G + DSDI+LFG R VY+++
Sbjct: 121 EQMNIEAQELVRLFGLPYVVSPMEAEAQCAFLDLTSQTNGTVTDDSDIWLFGGRNVYKNL 180
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ +R +V + +D E++L R L+ +AL+ GSDY+ G+ GP +A +I
Sbjct: 181 FNSKR-HVEWFRFEDFEKQLFLTREKLVNMALVCGSDYTPGIHNAGPVAAMEI------- 232
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
+ + GL ++ K W + K + ++ + + P V+D
Sbjct: 233 --MGEFPAPGLRSLQLFKQ-----WWDEAQTKVKVQETKVKIKLRKLVINEGFPSEAVVD 285
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAER 353
AY NP + + F R L Q F W EK DE +LP + +
Sbjct: 286 AYMNPTVDESRED----------FSWGRPDLDLLRQYAKNRFGWNKEKIDESLLPVMKQI 335
Query: 354 DLRRFANLR 362
+ ++ + LR
Sbjct: 336 NAKQDSQLR 344
>gi|351699459|gb|EHB02378.1| Flap endonuclease GEN-like protein 1 [Heterocephalus glaber]
Length = 910
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 213/489 (43%), Gaps = 89/489 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW ILE K+ + L L + + +DLS W+ + Q+V K T K LR LF R
Sbjct: 1 MGVNGLWQILEPVKQHVHLRSLSGQTIAVDLSVWVCEAQSVRKMVGTVT-KPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L+ ++ L+FV +G +K +R Q + +R S F
Sbjct: 60 VSHLMQMDIRLVFVMEGEPAKLKAGVMSKR-------NQMRYGPSGKTGSQRTGRSRFKL 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LGVP ++ EAEA CA LN DGC + D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGVPWVQAAGEAEAMCAHLNGTGRADGCLTDDGDAFLYGAQTVYRNFTM 172
Query: 181 -GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY + + G+G E A +++ +
Sbjct: 173 NAQDPHVDCYTMSSIKNKLGLDRDALVGLAILLGCDYLPKAIPGVGKEQALTLIQILKGE 232
Query: 239 VVLQRI---------------ASE-------------------GLSFVKRAKNSKKEGWS 264
+LQR A+E G K ++ + +
Sbjct: 233 SLLQRFNQWNEKSCHSVPQPEAAELAHCSVCSHPGSLKDHERNGCQLCKSSRYCEPHDYE 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + + G +++++++ PF +VI + + + + RV+
Sbjct: 293 YCCPCEWHQTKHDRQLIGVENNIKKKACSCEGFPFHEVIQE------FLLNKDKLVRVIR 346
Query: 319 QH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLP 373
LFQ L ++ +WP + +L + D+ R N+ L
Sbjct: 347 YQRPDLLLFQRFTLEKM-----EWPNHYACKKLLVLLTRYDMMERKLGRKNSDQLQ---- 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS--------SVVPADLIESACP 423
P++ I+K R G CFE+ WE E + ++ +V L E+A P
Sbjct: 398 ----PIR-----IVKPRIRNGVHCFEIEWEMPEHFAVEDGEHGELILTVEEESLFEAAYP 448
Query: 424 EKIVEFEER 432
E + ++ +
Sbjct: 449 EIVAIYQNQ 457
>gi|357608737|gb|EHJ66129.1| hypothetical protein KGM_15891 [Danaus plexippus]
Length = 722
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 130/256 (50%), Gaps = 16/256 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTDKLFLRGLFH 59
MG+K LW +L + + LH + + V IDL+ W+ QNV Y +P KL+LR LF
Sbjct: 1 MGIKGLWTVLAPYSEKISLHEISGQTVAIDLAGWVCDSQNVTDYYIQP---KLYLRNLFF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIK--LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSE 117
R L+ + IFV +G P +K + R L + K +++ R +
Sbjct: 58 RTLYLVLSDVNPIFVLEGDAPELKRDVMAARNALQFKGAAPKATTEKTKQTNITR---TR 114
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F ++KE + L ++GV C++G EAEA CA LN E L D S DSD F +GA+ VYR+
Sbjct: 115 FKGVLKECENLLRTMGVRCVKGRGEAEAACARLNAEGLVDAVVSQDSDCFAYGAKKVYRN 174
Query: 178 IWL-------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+ G V Y+ + GFGRN ++ LALL GSDY GV G +
Sbjct: 175 FSVSSAGGGGATHGSVDVYDAVKMFNNKGFGRNKMVALALLCGSDYGVGVCGSSKTTVVS 234
Query: 231 IVKSVGDNVVLQRIAS 246
+ +V ++ V+ R+ S
Sbjct: 235 FLHTVPEDQVISRLLS 250
>gi|444731649|gb|ELW71998.1| Flap endonuclease GEN like protein 1 [Tupaia chinensis]
Length = 793
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 122/219 (55%), Gaps = 13/219 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + LH+L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIDLHNLVGKSIAVDLSLWVCEAQTVKKMIG-TVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIK--LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
+ L ++ L+FV +G P +K + + R ++ G K S +R S+F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKRNQIRYGPS--------GKTWSQKRGR-SQF 110
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+
Sbjct: 111 KSVLRECLDMLECLGIPWVQAAGEAEAMCAYLNACGYVDGCLTNDGDAFLYGAQTVYRNF 170
Query: 179 WLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + +V CY M I+ KLG R++L+ LA+LLG DY
Sbjct: 171 TMNTKDPHVDCYTMSCIKDKLGLDRDALVGLAILLGCDY 209
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 135/253 (53%), Gaps = 16/253 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-------LF 53
MGVK LW +LES + + L L+NK + +D+S W+ N+S R D
Sbjct: 1 MGVKGLWKLLESAGQPITLESLENKILAVDISLWL------NESLRGMRDHQGSLIENAH 54
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GLF+RL L+ +FV DG +P +K T + ++ + + +L + +
Sbjct: 55 LLGLFYRLCKLLFFKIRPVFVFDGGVPLLKKQTISKLVDVQRSLEEQQTSLIQEHKRQER 114
Query: 114 MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
M + S M E + L G+P + EAEAQCA+L+ + DG + DSDIFLFG R
Sbjct: 115 MAASVSNEMYSECQELLSLFGIPYIVSPMEAEAQCAVLDFTNQTDGTITDDSDIFLFGGR 174
Query: 173 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+YR ++ E Y+ I+R +G R +ITLA LLGSDY+ G++ +G A +++
Sbjct: 175 NIYRYVF-RESKLAEFYDSQRIQRLMGLDRKKMITLAYLLGSDYTDGIKNVGIVMAMELL 233
Query: 233 KSVGDNVV-LQRI 244
+ GD++ LQ+I
Sbjct: 234 STFGDDLTGLQKI 246
>gi|297668153|ref|XP_002812316.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease GEN homolog 1
[Pongo abelii]
Length = 912
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 212/507 (41%), Gaps = 99/507 (19%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLCNLAGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQTRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ E EA CA L + DGC ++D D FL Y
Sbjct: 113 VLRECLHMLXCLGIPWVQAAGEPEALCAYLIVGDHVDGCLTNDGDTFLXXXXXXYVLFED 172
Query: 181 GERG-----YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 XTKSVLXDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQI 232
Query: 235 VGDNVVLQRI-----------------------------------ASEGLSFVKRAKNSK 259
+ +LQR G K K +
Sbjct: 233 LKGQSLLQRFNRWNETSCNSSPQPLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCE 292
Query: 260 KEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAV 313
+ + C + + +N +++++++ PF +VI + + + +
Sbjct: 293 PHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQE------FLLNKDKL 346
Query: 314 HRVLAQH-----LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTL 366
+V+ LFQ L ++ +WP E +L + D+ R+ + +N L
Sbjct: 347 VKVIRYQRPDLLLFQRFTLEKM-----EWPSHYACEKLLVLLTHYDMIERKLGSRNSNQL 401
Query: 367 ALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPA 415
P++ I+K+R G CFE+ WE E Y ++ ++
Sbjct: 402 Q----------PIR-----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEE 446
Query: 416 DLIESACPEKIVEFEERRALRQPKKSK 442
L E+A PE + +++++ + KK K
Sbjct: 447 SLFEAAYPEIVAVYQKQKLEIKGKKQK 473
>gi|187608436|ref|NP_001120251.1| Gen endonuclease homolog 1 [Xenopus (Silurana) tropicalis]
gi|169641850|gb|AAI60467.1| LOC100145302 protein [Xenopus (Silurana) tropicalis]
Length = 219
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 13/219 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW IL KK +PL L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVTDLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMV-KQMIGVVHKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
+ +L L L+FVS+G P IK T +R + G + + S F
Sbjct: 60 ISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPPKAGR---------SYF 110
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
++KE + LG+P ++ EAEA CA LN DGC ++D D+FL+GA+T YR+
Sbjct: 111 KSVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTFYRNF 170
Query: 179 WLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + +V CYE+ I+ +LG R L+ LA+LLG DY
Sbjct: 171 TMNVKDPHVDCYEVSKIKAQLGLDREELVGLAILLGCDY 209
>gi|449454486|ref|XP_004144985.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449472478|ref|XP_004153607.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
gi|449516535|ref|XP_004165302.1| PREDICTED: flap endonuclease GEN-like 1-like [Cucumis sativus]
Length = 606
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 132/252 (52%), Gaps = 9/252 (3%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ +T L+NKRV +DLS WIVQ + KS LR F
Sbjct: 1 MGVGGHFWDLLKPNARTEGFDFLRNKRVAVDLSFWIVQHETAIKS---TARSPHLRLTFF 57
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-TQDDKNLDKMSSLRRNMGSE 117
R L A +FV DG+ +K R + S V T D ++ S+ RN +
Sbjct: 58 RTITLFAKFGAFPVFVVDGTPSPLKSKARIARFSRLSGVDTSDLPKVEDRISVHRN--RK 115
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ +KE L GVP LE EAEA CA LN + D C ++DSD FLFGA+ V +
Sbjct: 116 FAKCVKECVELLELFGVPVLEAKGEAEALCAELNQKGFVDACITADSDAFLFGAKCVIKS 175
Query: 178 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG 236
+ + CY M DIE LGF RN LI ++LL+G+D+ GV+G+G ++A V+
Sbjct: 176 FNPNSKEPLECYFMSDIEAALGFNRNHLIAISLLVGNDHDLNGVQGVGLDTAVCFVQDYT 235
Query: 237 DNVVLQRIASEG 248
D+ +L ++ G
Sbjct: 236 DDEILNKLYEIG 247
>gi|357507117|ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like protein [Medicago truncatula]
Length = 612
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 133/256 (51%), Gaps = 17/256 (6%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N W++L+ + L+NKRV IDLS WIVQ N K++ +P F R
Sbjct: 1 MGVGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTHVKKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL--NSGSEVTQDDKNLDKMSSLRRN 113
LF + A +FV DG+ +K R +SG E T + +S+ R
Sbjct: 61 NLFSKFGAFP------VFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRN- 113
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
S FS ++E L LG+P L+ EAEA CA LN E D C + DSD FLFGA+
Sbjct: 114 --STFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKC 171
Query: 174 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIV 232
+ + + CY M DIE LG R LI ++LL+G+D+ GV+G+G +SA + V
Sbjct: 172 IIKSFSPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFV 231
Query: 233 KSVGDNVVLQRIASEG 248
++ G++ +L R+ G
Sbjct: 232 QAFGEDDILNRLHEIG 247
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 5/236 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGVK LW +LE K + L LQ K + +D S + Q ++ + L LFH
Sbjct: 1 MGVKGLWQLLEPVGKPVTLESLQGKVLAVDASILMNQAIKGMRDGSGNPVPNAHLFVLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRL--NSGSEVTQDDKNLDKMSSLRRNMGSE 117
RL L+ +FV DG +P +K T R + + ++ + L + + +E
Sbjct: 61 RLCKLLFYRVKPVFVFDGGVPVLKKKTLVRAYLEEMQTNLNREQRTLQSERARQARASAE 120
Query: 118 FSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
S M+ E++ L GVP L EAEAQCA L++ DG + DSD+FLFG R VY+
Sbjct: 121 VSTEMLNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQTDGTITDDSDVFLFGGRRVYK 180
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+I+ + + CY +DI++ L R+ +I LA + GSDY++G++GLG SA +++
Sbjct: 181 NIF-NQNKHAECYTCEDIDKGLALSRSKMIKLAFVTGSDYTEGIQGLGAVSAMEVL 235
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/422 (29%), Positives = 188/422 (44%), Gaps = 50/422 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+ LW IL ++ PL L + V +DLS W +V + T KL+LR LF R
Sbjct: 1 MGVRGLWSILAPIQEHRPLAELGGETVAVDLSIWTCGDVSVKHNMSVST-KLYLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS---GSEVTQDDKNLDKMSSLRRNMGSE 117
L+ N + V DG P++K +T RL + E++ D L K L + G
Sbjct: 60 TLNLLRQNTLPVVVLDGVAPSLKATTIANRLCTQRRNIELSIDPAVLVKRRRLSKISG-- 117
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
E + L +LGVPC++ EAEA CALLN D C ++D D FL+GA TVYR
Sbjct: 118 ------ECRTLLQALGVPCVQSPGEAEAMCALLNSSKRVDACITNDGDAFLYGATTVYRH 171
Query: 178 IWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSV 235
+ R V Y I ++L R L+ L+++LG DY G G+G ++V S
Sbjct: 172 FTMNSRDPSVYVYRSSRIYKELSLDRFLLVFLSIVLGCDYWPTGTVGIGQAGIQRLVSS- 230
Query: 236 GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQ 295
L+ + SE L + N K G + ++ E + + D L R +++
Sbjct: 231 -----LRCLTSEKL---RDLLNWIKTG---RQVSQTEVVEAHSFLRNLDPKLLRL--WTK 277
Query: 296 VIDAYSNPKC--------YSADSEAVHRVLAQHLFQHARLH-------QVCAQFFQWPPE 340
+ID + +C + A++E L F L C+ W P+
Sbjct: 278 IIDTFQ--QCPVDEILAEFLANAEERMWSLPSSEFVSTWLRPNPRALVAFCSTHLDWDPD 335
Query: 341 KTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEV 400
+ ++LP +A D+R +A +D + +P K I+K R + CFEV
Sbjct: 336 YSLHHLLPVLAMWDMRHPRLGALIPMAHSIDDAVTLIPRK-----IVKRRTVNFIPCFEV 390
Query: 401 SW 402
W
Sbjct: 391 EW 392
>gi|110430659|gb|ABG73449.1| DNA repair protein [Oryza brachyantha]
Length = 629
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 130/258 (50%), Gaps = 13/258 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+++RV +DLS W+V ++ P LR LF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRDRRVAVDLSFWVVSHSTAIRARSPHARVPHLRTLFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L + + +FV DG +K R GS + T+ + N D R
Sbjct: 61 RTLSLFSKMGAYPVFVVDGEPSPLKSQARAARFFRGSGMDLATLPSTEGEANADSPVQPR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
++F+ +KE L LG+P L E EA CA LN E D C +SDSD FLFGA
Sbjct: 121 ---NAKFTRYVKECVELLEYLGMPVLRAKGEGEALCAQLNNEGHVDACITSDSDAFLFGA 177
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A +
Sbjct: 178 KTVIKVLRSNCKEPFECYNMTDIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ VL ++ G
Sbjct: 238 FVQLFDEDTVLDKLYEIG 255
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine
max]
Length = 1707
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 169/363 (46%), Gaps = 64/363 (17%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L RN S S + E + L G+P + EAEAQCA L LE L DG + DSD+ LF
Sbjct: 1011 LERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLF 1070
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR+VY++I+ +R YV Y M+DIE++LG R LI +ALLLGSDY++GV G+G +A
Sbjct: 1071 GARSVYKNIF-DDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAI 1129
Query: 230 QIVKSV---------------GDNVVLQRI-ASEGLSFVKRAKNSKKEGWSFKCNNKEES 273
++V + D +L R+ A+ G + K+ +++ S CN KE +
Sbjct: 1130 EVVNAFPEEDGLLKFRQWVESPDPTILGRLDANSGSNSRKKGSKIEEKMNSSSCNVKESA 1189
Query: 274 LNQEI-------------------------NVNGTDHSLQRETPFSQVIDAYSNPKCYSA 308
+ Q I NV+ H + P VI AY +P +
Sbjct: 1190 VMQNICHAQEQNELSDYIQEIKQTFFNKHRNVSKNWH-IPSSFPSDTVISAYYSPHVDKS 1248
Query: 309 DSEAVHRVLAQHLFQHARLH--QVCAQFFQWPPEKTDEYILPKIAERDLR---------- 356
+E HL +H ++C + F W +K DE ILP + E + R
Sbjct: 1249 -TEPFTWGKPDHLVLRKXVHMFRLCWEKFGWTGQKADELILPVLKEYNKRETQLRLEAFY 1307
Query: 357 ----RFANLRANTLALGVDLPLQKVP---VKCPITGIIKSRKLQGKECFEVSWEESYGLK 409
RFA +R+ + V K P + KSRK G+E +++ E S G++
Sbjct: 1308 NFNERFAKIRSKRIKKAVKGITGKQPSDLIDDSAEEFSKSRKT-GREPEDITLETSRGIE 1366
Query: 410 SSV 412
++
Sbjct: 1367 GNL 1369
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV LW++L + + + L K + +D S W+VQ K+ R + ++ L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFV---KAMRDEKGEMVRNAHLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEV 97
F R+ L+ L +FV DG PA+K T R+R N+ ++V
Sbjct: 58 FFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKV 102
>gi|297842934|ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
gi|297335190|gb|EFH65607.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 131/258 (50%), Gaps = 21/258 (8%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N WD+L + +L+NKRV +DLS WIVQ + K + +P F R
Sbjct: 1 MGVGGNFWDLLRPYAQQRGFDYLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLR 111
LF + A +FV DG+ +K R S + D NL D +S R
Sbjct: 61 NLFSKFGAYP------VFVVDGTPSPLKSQARISRFFRSSGI--DTCNLPVIKDGVSVER 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ E+ +KE L L +P L+ EAEA CA LN E D C + DSD FLFGA
Sbjct: 113 NKLFCEW---VKECVELLELLSIPVLKANGEAEALCAQLNSEGYVDACITPDSDAFLFGA 169
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
+ V +DI R CY M DIE LG R LI ++LL+G+DY S GV G+G + A +
Sbjct: 170 KCVIKDIKPNSREPFECYHMSDIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALR 229
Query: 231 IVKSVGDNVVLQRIASEG 248
IV+ ++ +L+R+ G
Sbjct: 230 IVREFSEDEILERLQDIG 247
>gi|218200330|gb|EEC82757.1| hypothetical protein OsI_27475 [Oryza sativa Indica Group]
Length = 305
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 108/160 (67%), Gaps = 14/160 (8%)
Query: 344 EYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWE 403
+YILPKIAER+LRRF++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW
Sbjct: 3 QYILPKIAERELRRFSDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWR 62
Query: 404 ESYGLKSSVVPADLIESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKL 454
GL+ SVVP DL++SACPEKI EF ++RRA +PKKS +++ ++D++L
Sbjct: 63 NIEGLQVSVVPGDLVKSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQL 119
Query: 455 QALMLDIESENSTSSNASFSSRVVMSEDWTAATE--IDLT 492
Q L+L IE+++ A+ S ++ +T A E +DL+
Sbjct: 120 QELLLGIEADSGGILGATASVCQTLTAAYTVAVEDVVDLS 159
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 14/245 (5%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLFHRLR 62
LW ++ + + L + NK++ ID S W+ Q QN ++ R T+ L G R+
Sbjct: 1 GLWTLITPVARPIKLETMGNKKLAIDSSIWLYQFQNAMRDREGRGLTNAHIL-GFLRRIS 59
Query: 63 ALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD----------KNLDKMSSLRR 112
L+ +FV DG P +K T L S DD K D+ RR
Sbjct: 60 KLLYYGIKPVFVFDGGAPVLKKQTIVEHLYFSSIFKLDDMRHQVDAEVNKLKDQRVKDRR 119
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ M K+ +++ G+P + EAEAQCA L + L DG + DSD+FLFG
Sbjct: 120 DADDVNLQMSKDIQSMLRLFGIPYVISPMEAEAQCAELLKKGLVDGIITDDSDVFLFGGT 179
Query: 173 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
VY++++ + +V CY M+D+E++LG R LI LA LLGSDY++G+ G+GP +A +I+
Sbjct: 180 RVYKNMF-NQNKFVECYLMNDLEKELGLSRQRLIQLAYLLGSDYTEGLAGVGPVTAMEIL 238
Query: 233 KSVGD 237
D
Sbjct: 239 SEFDD 243
>gi|225453885|ref|XP_002273159.1| PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera]
gi|296089141|emb|CBI38844.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 136/255 (53%), Gaps = 15/255 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS--YRPQTDKLFLR-- 55
MGV + W++L+ + +++NKRV +DLS WIVQ + K+ P F R
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKANVRNPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD-KNLDKMSSLRRNM 114
LF + A +FV DG+ +K R GS + +++ S+ RN
Sbjct: 61 NLFSKFGAFP------VFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERN- 113
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
+EFS ++E L LG+P L+ EEAEA CA LN E D C ++DSD FLFGA+ V
Sbjct: 114 -AEFSRRVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCV 172
Query: 175 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
+ + + + CY M DIE LG R LI ++LL+G+DY GV+G+G ++A + V+
Sbjct: 173 IKCLRPNCKEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQ 232
Query: 234 SVGDNVVLQRIASEG 248
++ +L R+ +G
Sbjct: 233 GFSEDEILNRLQEKG 247
>gi|334182224|ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|332189225|gb|AEE27346.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 598
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 132/258 (51%), Gaps = 22/258 (8%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N WD+L + L+NKRV +DLS WIVQ + K + +P F R
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLR 111
LF + A +FV DG+ +K R S + D NL D +S R
Sbjct: 61 NLFSKFGAYP------VFVVDGTPSPLKSQARISRFFRSSGI--DTCNLPVIKDGVSVER 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ SE+ ++E + L L LG+P L+ EAEA CA LN + D C + DSD FLFGA
Sbjct: 113 NKLFSEW---VRECELLEL-LGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGA 168
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
V +DI R CY M IE LG R LI ++LL+G+DY S GV G+G + A +
Sbjct: 169 MCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALR 228
Query: 231 IVKSVGDNVVLQRIASEG 248
IV+ ++ VL+R+ G
Sbjct: 229 IVREFSEDQVLERLQDIG 246
>gi|334182222|ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap endonuclease GEN-like 1
gi|332189224|gb|AEE27345.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
Length = 599
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 130/258 (50%), Gaps = 21/258 (8%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N WD+L + L+NKRV +DLS WIVQ + K + +P F R
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLR 111
LF + A +FV DG+ +K R S + D NL D +S R
Sbjct: 61 NLFSKFGAYP------VFVVDGTPSPLKSQARISRFFRSSGI--DTCNLPVIKDGVSVER 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ SE+ ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA
Sbjct: 113 NKLFSEW---VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGA 169
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
V +DI R CY M IE LG R LI ++LL+G+DY S GV G+G + A +
Sbjct: 170 MCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALR 229
Query: 231 IVKSVGDNVVLQRIASEG 248
IV+ ++ VL+R+ G
Sbjct: 230 IVREFSEDQVLERLQDIG 247
>gi|356561657|ref|XP_003549096.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 144
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 99/133 (74%), Gaps = 8/133 (6%)
Query: 350 IAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLK 409
I ++LRRFANLR + +G++LPL ++PVKCP++ IIKSR++QG+EC+EVSWE GL+
Sbjct: 12 IVHKNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLE 71
Query: 410 SSVVPADLIESACPEKIVEFEERRAL--------RQPKKSKPKSSAAEIDQKLQALMLDI 461
+S+VPADLIESAC EKI+EFEER+A R+PKK + SS AE+D KLQ L+LDI
Sbjct: 72 TSIVPADLIESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDI 131
Query: 462 ESENSTSSNASFS 474
+ + NAS S
Sbjct: 132 NLRDEANFNASDS 144
>gi|8570440|gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
sapiens gi|1082359 and contains XPG N-terminal PF|00752
and XPG I-region PF|00867 domains [Arabidopsis thaliana]
Length = 497
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 130/258 (50%), Gaps = 21/258 (8%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N WD+L + L+NKRV +DLS WIVQ + K + +P F R
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLR 111
LF + A +FV DG+ +K R S + D NL D +S R
Sbjct: 61 NLFSKFGAYP------VFVVDGTPSPLKSQARISRFFRSSGI--DTCNLPVIKDGVSVER 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ SE+ ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA
Sbjct: 113 NKLFSEW---VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGA 169
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
V +DI R CY M IE LG R LI ++LL+G+DY S GV G+G + A +
Sbjct: 170 MCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALR 229
Query: 231 IVKSVGDNVVLQRIASEG 248
IV+ ++ VL+R+ G
Sbjct: 230 IVREFSEDQVLERLQDIG 247
>gi|356532054|ref|XP_003534589.1| PREDICTED: flap endonuclease GEN-like 1-like [Glycine max]
Length = 607
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 14/255 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV N WD+L+ + L+NKRV +DLS WIVQ +N K+ K LR F
Sbjct: 1 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQPENAIKAM--HVRKPHLRLTFF 58
Query: 60 RLRALIALNCGL-IFVSDGSIPAIK----LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNM 114
R +L L +F+ DGS +K ++ Y R SG E+ + +S+ R +
Sbjct: 59 RTISLFCKFGALPVFIVDGSPSLLKSRARIARYFR--CSGIELANLPVPEEGVSAERNRL 116
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
FS ++E L LG+P L+ EAEA CA LN E D C ++DSD FLFGA+ +
Sbjct: 117 ---FSSHVQECAELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCI 173
Query: 175 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
+ + CY M DIE LG R LI ++LL+G D+ GVRG+G ++A VK
Sbjct: 174 IKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGDDHDINGVRGIGLDTALHFVK 233
Query: 234 SVGDNVVLQRIASEG 248
+ ++ +L R+ G
Sbjct: 234 AFSEDDILNRLHEIG 248
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 125/243 (51%), Gaps = 15/243 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGV+ LW +L C + + + L++ + ID+S W+ Q + RP + + G
Sbjct: 1 MGVQGLWKLLAPCGRRISVETLEHTTLAIDVSIWLTQFVKAMRDDEGRPIRNAHLI-GTL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG--- 115
R+ L+ +FV DG +P +K R+R E +DD+ + +SLRR M
Sbjct: 60 RRVAKLLYHGVRPVFVFDGGVPVVKARLIRQR-QMRREKNRDDR---EAASLRREMSRSS 115
Query: 116 ----SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
S M ++ L LGVP + EAEAQCA L LC+G + DSD F FGA
Sbjct: 116 RDADSVTEDMREDTMHLLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTDDSDAFCFGA 175
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
R VY++I+ +R YV Y D R L GR+ LALLLG DY GV G+G +A ++
Sbjct: 176 RRVYKNIF-DDRKYVEAYYASDCARDLRLGRDEFCALALLLGGDYDNGVAGVGVVNAMEV 234
Query: 232 VKS 234
+++
Sbjct: 235 LQA 237
>gi|50287803|ref|XP_446331.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525638|emb|CAG59255.1| unnamed protein product [Candida glabrata]
Length = 992
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 133/241 (55%), Gaps = 21/241 (8%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MIK+ + L G+P + EAEAQCA L+NL+ L DG + DSD+FLFG + VY++++
Sbjct: 732 MIKDVQELLARFGIPYITAPMEAEAQCAELVNLK-LVDGIITDDSDVFLFGGKKVYKNMF 790
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
E+ YV Y+ +DI + LG R ++I LA LLGSDY+ G++G+GP S+ +I+ GD
Sbjct: 791 -QEKNYVEYYDSEDIYQGLGLTRETMIELAQLLGSDYTTGIKGMGPVSSMEILAEFGDLK 849
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
+R +EG F K+ K+EG F+ + +++ + +I L + P V D
Sbjct: 850 NFKRWYNEG-QFDKK----KQEGEDKFRRDLRKKLVKNDI-------ILDDDFPSVFVAD 897
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
+Y NP+ D + A L Q + WP EK+DE ++P I + + R+
Sbjct: 898 SYLNPEV---DHDKTPFTWANPDLDM--LRQFLYSYLGWPQEKSDEVLIPLIRDINARKK 952
Query: 359 A 359
A
Sbjct: 953 A 953
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI+ K + L L ++R+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLHDRRMAVDASIWIYQFLKAVRDKEGNAIKSAHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T ++R
Sbjct: 61 RVCKLLYFGIKPVFVFDGGVPVLKRKTIQKR 91
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus]
Length = 1541
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 153/327 (46%), Gaps = 51/327 (15%)
Query: 68 NCGLIFVSDGSIPAI-KLS----TYRRRLNSGSEVTQDDKNL-DKMSSLRRNMGSEFSCM 121
N L+ D IP + K+S T ++ S + Q+ NL D+ L RN S S M
Sbjct: 829 NDVLLDAKDAKIPTVGKISSAEITEDELIHRISVLEQERLNLGDEQKRLERNAESVNSEM 888
Query: 122 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 181
E + L G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+
Sbjct: 889 FAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF-D 947
Query: 182 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
+R YV Y M DIE +LG R+ LI +ALLLGSDY++GV G+G +A +++ + + L
Sbjct: 948 DRKYVETYFMKDIEHELGLNRDKLIQMALLLGSDYTEGVSGIGIVNAVEVMNAFPEEDGL 1007
Query: 242 QRI----------------ASEGLSFVKRAKNSKKEGWSFKCNN---------------- 269
+ A GL+ KR SK C+N
Sbjct: 1008 HKFKEWIESPDPSILGPLGAKTGLNAHKRG--SKASENDTTCSNSSGSASEENISKDLKE 1065
Query: 270 ----KEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA 325
K+ +N+ NV+ H + E P VI AY C D A + H
Sbjct: 1066 NMAVKQSFMNKHRNVSKNWH-IPSEFPSETVISAYI---CPQVDKSA--EPFSWGKPDHF 1119
Query: 326 RLHQVCAQFFQWPPEKTDEYILPKIAE 352
L ++C + F W K DE +LP + E
Sbjct: 1120 VLRRLCWEKFGWENSKADELLLPVLNE 1146
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKLFLRGLFH 59
MGV+ LW++L + + + L K++ ID S W+VQ + R + L G F
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFIKAMRDDRGEMVRNAHLLGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEV 97
R+ L+ L +FV DG+ PA+K T R+R N+ ++V
Sbjct: 61 RICKLLFLRTKPVFVFDGATPALKRRTLIARRRQRENAQAKV 102
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 13/258 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W+V ++ P LR LF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L + + +FV DG +K R GS + T+ + + D + R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA
Sbjct: 121 ---NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A +
Sbjct: 178 KTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ VL ++ G
Sbjct: 238 FVQLFDEDNVLAKLYEIG 255
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana]
gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog;
AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3;
Short=AtXPG; AltName: Full=UV hypersensitive protein 3;
AltName: Full=XPG homolog
gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana]
gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana]
Length = 1479
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 225 PESACQIVKSVGDNVVLQRIAS---------EGLSFVKRAKNSKKEGWSFKCNNK----- 270
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1086
Query: 271 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1135
Query: 321 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 361
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1136 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1195
Query: 362 RANTLALGV 370
R+ + V
Sbjct: 1196 RSKRINKAV 1204
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV+ LW++L + + + L NKR+ ID S W+VQ K+ R + + L G
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFI---KAMRDEKGDMVQNAHLIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
F R+ L+ L IFV DG+ PA+K T RRR
Sbjct: 58 FFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRR 93
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 9/257 (3%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS WIV ++ P LR F
Sbjct: 1 MGVGGSFWDLLKPYARQEGAGYLRGRRVAVDLSFWIVSHTTAIRARSPHARHPHLRTTFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNLDKMSSLRR 112
R +L + + +FV DG +K R GS + ++D + + + +
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKYQARAARFFRGSGIDRSALQSEDAEGEASVPAPVK 120
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ F+ ++E L LG+P L EAEA CA LN E D C +SDSD FLFGA+
Sbjct: 121 GRNAAFTRYVEECVELLGYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSDAFLFGAK 180
Query: 173 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQI 231
TV + + + CY + DIE +G R ++ +ALL+GSD+ GV G G E+A +
Sbjct: 181 TVIKVLRSNCKEPFECYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPGFGVETALRF 240
Query: 232 VKSVGDNVVLQRIASEG 248
V+ ++ +L ++ G
Sbjct: 241 VQLFEEDHILDKLKEIG 257
>gi|11994123|dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana]
Length = 1522
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 949 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 1008
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 1009 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1067
Query: 225 PESACQIVKSVGDNVVLQRIAS---------EGLSFVKRAKNSKKEGWSFKCNNK----- 270
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1068 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1126
Query: 271 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1127 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1175
Query: 321 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 361
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1176 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1235
Query: 362 RANTLALGV 370
R+ + V
Sbjct: 1236 RSKRINKAV 1244
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 29/119 (24%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCI--------------------------DLSCW 34
MGV+ LW++L + + + L NKR+ I D S W
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIGKQISGDQLQLYCIIFPASSSSFEFADASIW 60
Query: 35 IVQLQNVNKSYRPQ-TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
+VQ + + L G F R+ L+ L IFV DG+ PA+K T RRR
Sbjct: 61 MVQFIKAMRDEKGDMVQNAHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRR 119
>gi|414590012|tpg|DAA40583.1| TPA: hypothetical protein ZEAMMB73_816984 [Zea mays]
Length = 636
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 12/258 (4%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ C + +L+ +RV +DLS W+V ++ P+ LR F
Sbjct: 1 MGVGGSFWDLLKPCARHEGAGYLRGRRVAVDLSFWVVSHTTAIRARLPRARSPHLRTTFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGS-------EVTQDDKNLDKMSSLR 111
R +L A + +FV DG +K R GS VT+ + + +
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGMDLAALPVTEAESSAAAAPVKK 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
RN + F+ ++E L LG+P L EAEA CA LN E D C ++DSD FL+GA
Sbjct: 121 RN--AAFTRAVEECVELLEYLGMPVLRANGEAEALCAQLNSEGHVDACITADSDAFLYGA 178
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY + DIE LG R ++ +ALL+GSD+ GV G G E+A +
Sbjct: 179 KTVVKVLRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ +L ++ G
Sbjct: 239 FVQLFDEDEILDKLHEIG 256
>gi|254581574|ref|XP_002496772.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
gi|238939664|emb|CAR27839.1| ZYRO0D07788p [Zygosaccharomyces rouxii]
Length = 1030
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 138/277 (49%), Gaps = 19/277 (6%)
Query: 83 KLSTYRRRLNSG--SEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGV 140
+ ST++ LN+ +D+ ++ + +R+ + MI + + L GVP +
Sbjct: 730 EFSTFKNVLNNRVVDNAFMEDELYEQQTKDKRDSDEVTADMITDVQDLLSRFGVPYITAP 789
Query: 141 EEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGF 200
EAEAQCA L + L DG + DSD+FLFG VY++++ ER YV Y+ + I + LG
Sbjct: 790 MEAEAQCATLMRDRLVDGVITDDSDVFLFGGNKVYKNMF-SERNYVEYYDAESIYKNLGL 848
Query: 201 GRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKK 260
RN +I LA LLGSDY+ G++G+GP S +++ G ++ +EG K+ + K
Sbjct: 849 DRNGMIELAQLLGSDYTNGIKGMGPVSGMEVIAEFGSLEEFRKWHNEGQFDKKKQEQENK 908
Query: 261 EGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
F+ + + + E+ L P V +AY NP+ + +E V
Sbjct: 909 ----FQKDLRRRLVKNEV-------VLDENFPSETVKNAYLNPEVDNDKTEFVWGTPDLD 957
Query: 321 LFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ + +V WP EKTDE ++P I + + R+
Sbjct: 958 MLRSFFKRKVG-----WPQEKTDEVLVPLIRDMNKRK 989
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----LRG 56
MGV + WD++ + + L LQ++++ +D S WI Q K+ R Q + G
Sbjct: 1 MGVHSFWDVVGPTARPVRLESLQDRKMAVDASIWIYQFL---KAVRDQEGNALKHSHIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +PA+K T R+R
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGVPALKQDTIRQR 91
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 129/258 (50%), Gaps = 13/258 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W++ ++ P LR LF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVISHSAAIRARSPHARLPHLRTLFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L + + +FV DG +K R GS + T+ + + D R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADAPVQPR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA
Sbjct: 121 ---NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A +
Sbjct: 178 KTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ VL ++ G
Sbjct: 238 FVQLFDEDNVLAKLYEIG 255
>gi|221113045|ref|XP_002168588.1| PREDICTED: flap endonuclease GEN homolog 1-like [Hydra
magnipapillata]
Length = 299
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 124/245 (50%), Gaps = 15/245 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWDI+ S K+ L+ K + +DLS WIV+ + +S +R +F R
Sbjct: 1 MGVKYLWDIINSSKEKTNPDSLRGKVITVDLSIWIVEAIKLKQSVANSH----IRNMFFR 56
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L LI V +G P +K +T R R Q L S++ RN F
Sbjct: 57 ICYLRKFGVKLIIVIEGKAPDLKQNTMRYR-----NFCQYGVKLGTASTVGRN---RFQA 108
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I E L LG+P + EAE CA LN + + DGC ++D D FL+G + +YRD
Sbjct: 109 LILECCELLDLLGIPYIRATGEAEQMCAFLNSKKISDGCLTNDGDFFLYGGKCIYRDFSA 168
Query: 181 GERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV--KSVGD 237
+ V Y + I+ K+G R+ +I +ALL G DY +GV G+G + + KS +
Sbjct: 169 DPKNPCVSTYTQEKIKDKIGITRHDMIGIALLCGCDYIKGVSGIGKSLVSKFISEKSFKE 228
Query: 238 NVVLQ 242
N++++
Sbjct: 229 NLLVR 233
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1463
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 143/299 (47%), Gaps = 43/299 (14%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 904 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 963
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 964 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1022
Query: 225 PESACQIVKSVGDNVVLQRIAS---------EGLSFVKRAKNSKKEGWSFKCNNKEES-- 273
+A ++V + + L + GL KR S + +++
Sbjct: 1023 IVNAIEVVTAFPEEDGLHKFREWVESPDPTILGLKIKKRGSGSVDNKGIISGASTDDTEE 1082
Query: 274 -----LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH---A 325
++Q V+ H + P VI AY NP+ V R + + +
Sbjct: 1083 IKQIFMDQHRKVSKNWH-IPSTFPSEAVISAYLNPQ--------VDRSTEKFSWGKPDLS 1133
Query: 326 RLHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANLRANTLALGV 370
L ++C + F W +KTD+ +LP + E + R RFA +R+ + V
Sbjct: 1134 VLRKLCWEKFNWNSKKTDDLLLPVLKEYEKRETQLRMEAFYSFNERFAKIRSKRINKAV 1192
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV+ LW++L + + + L NKR+ ID S W+VQ K+ R + + L G
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFI---KAMRDENGDMVQNAHLIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
F R+ L+ L IFV DG+ PA+K T RRR
Sbjct: 58 FFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRR 93
>gi|242045348|ref|XP_002460545.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
gi|241923922|gb|EER97066.1| hypothetical protein SORBIDRAFT_02g030290 [Sorghum bicolor]
Length = 590
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 128/258 (49%), Gaps = 12/258 (4%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W+V ++ P+ LR F
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAIRARLPRARSPHLRTTFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L A + +FV DG +K R GS + T+ + + R
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGMDLAALPSTETESSAAAAPVKR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
RN + F+ ++E L LG+P L EAEA CA LN E D C ++DSD FLFGA
Sbjct: 121 RN--AAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVDACITADSDAFLFGA 178
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + CY + DIE LG R ++ +ALL+GSD+ GV G G E+A +
Sbjct: 179 KTVVKVFRSNCKEPFECYHIADIESGLGLKRKQMVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ +L ++ G
Sbjct: 239 FVQLFDEDEILDKLHEIG 256
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis]
Length = 1641
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 48/301 (15%)
Query: 88 RRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 147
+ R+N GSE L RN S S M E + L G+P + EAEAQC
Sbjct: 943 QERMNLGSE----------QKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQC 992
Query: 148 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLIT 207
A + L +L DG + DSD+FLFGAR VY++I+ +R YV Y M DIER+LG R LI
Sbjct: 993 AYMELANLVDGVVTDDSDVFLFGARNVYKNIF-DDRKYVETYFMKDIERELGLTREKLIR 1051
Query: 208 LALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS---------EGLSFVKRAKNS 258
+ALLLGSDY++G+ G+G +A ++V + + L++ G V+ ++
Sbjct: 1052 MALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLEKFREWIYSPDPTILGKLDVRDGRSM 1111
Query: 259 KKEGWSFKCNN--------------KEES------------LNQEINVNGTDHSLQRETP 292
+++G S NN KEE +++ NV+ H + P
Sbjct: 1112 RRKGESDSANNNVVDSFGKKVSESHKEEDSADHTQEIRQIFMDKHRNVSKNWH-VPSSFP 1170
Query: 293 FSQVIDAYSNPKCYSADSEAVHRVLAQHLF-QHARLHQVCAQFFQWPPEKTDEYILPKIA 351
VI AY +P+ + H+ + + +C + F W +K+DE +LP +
Sbjct: 1171 SEAVISAYMSPQVDKSTEPFTWGKPDLHVLRRQVMIFIICWEKFAWGVQKSDELLLPVLK 1230
Query: 352 E 352
E
Sbjct: 1231 E 1231
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKLFLRGLFH 59
MGV+ LWD+L + + + L K++ ID S WIVQ ++ + + L G F
Sbjct: 1 MGVQGLWDLLAPVGRRVSVETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRNAHLLGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
R+ L+ L +FV DG+ PA+K T RRR
Sbjct: 61 RICKLLYLRTKPVFVFDGATPALKRRTVIARRR 93
>gi|255541446|ref|XP_002511787.1| DNA binding protein, putative [Ricinus communis]
gi|223548967|gb|EEF50456.1| DNA binding protein, putative [Ricinus communis]
Length = 609
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 130/251 (51%), Gaps = 21/251 (8%)
Query: 1 MGVKN-LWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV WDIL+ + L+ KRV IDLS WIVQ + KSY +P F R
Sbjct: 1 MGVGGKFWDILKPYTRHEGPDFLREKRVAIDLSYWIVQHETAIKSYARKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LF + A +FV DG+ +K +S + R S V ++ S+
Sbjct: 61 NLFSKFGAFP------VFVVDGTPSPLKSRARISRFFRSSGIDSSVL---PTPEEGVSVE 111
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
RN G+ C +KE L G+P L+ EAEA CA LN + L D C ++DSD FLFGA
Sbjct: 112 RN-GAFLKC-VKECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFLFGA 169
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+ V + I + CY+M DIE L R LI +ALL+G+D+ GV+G+G ++A +
Sbjct: 170 KCVIKSIKPNSKEPFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGVDTALR 229
Query: 231 IVKSVGDNVVL 241
V++ ++ +L
Sbjct: 230 FVQTFHEDEIL 240
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW IL S ++ PL + V +DLS WI +KS P L LR LF R
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICG----DKSITP-LPALHLRNLFFR 55
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN--SGSEVTQ--DDKNLDKMSSLRRNMGS 116
L L+ N I V DG P++K ++R +G TQ NL+++
Sbjct: 56 LVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRI--------- 106
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
FS + +E L S G+P ++ EAEA CA LN L D C ++D D FL+GA TVYR
Sbjct: 107 RFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYR 166
Query: 177 DIWLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ R VC + M I L + L+ L +LLG DY + GV LGP A +++ S
Sbjct: 167 HFSMDSRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISS 226
Query: 235 V 235
+
Sbjct: 227 L 227
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera]
Length = 1449
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 45/299 (15%)
Query: 92 NSGSEVTQDDKNL-----------------------DKMSSLRRNMGSEFSCMIKEAKAL 128
N G+ VT+D KN+ D+ L RN S M E + L
Sbjct: 746 NMGNSVTEDKKNVQFGVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQEL 805
Query: 129 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 188
G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+ ER YV
Sbjct: 806 LQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVET 864
Query: 189 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------------- 235
Y M DIE +LG R +I +ALLLGSDY++GV G+G +A +++ S
Sbjct: 865 YFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWV 924
Query: 236 --GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPF 293
D +L ++ E S ++ + E + K+ +++ NV+ H + P
Sbjct: 925 ESPDPNILGKVNVETGSSSRKRGSKHNESVDDIQSGKQIFMDKHRNVSKNWH-IPSSFPS 983
Query: 294 SQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352
VI AY++P+ S LF L ++C + F W +K DE +LP + E
Sbjct: 984 ETVISAYASPQVDQ--STEPFSWGKPDLFV---LRKLCLEKFGWGNQKADELLLPVLKE 1037
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV LW++L + + + L KR+ ID S W++Q K+ R + ++ L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFM---KAMRDEKGEMVRNGHLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
F R+ L+ L +FV DG PA+K T RRR
Sbjct: 58 FFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRR 93
>gi|293334819|ref|NP_001169528.1| uncharacterized protein LOC100383402 [Zea mays]
gi|224029901|gb|ACN34026.1| unknown [Zea mays]
gi|414886336|tpg|DAA62350.1| TPA: hypothetical protein ZEAMMB73_316768 [Zea mays]
Length = 638
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 12/258 (4%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W+V + P+ + LR F
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSTAILARLPRARRPHLRTTFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L A + +FV DG +K R GS + T+ + ++ R
Sbjct: 61 RTLSLFAKMGVFPVFVVDGEPSPLKSQARAARFFRGSGMDLAAFPSTEAESSVTAAPVKR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
RN + F+ ++E L LG+P L EAEA CA LN E C ++DSD FLFGA
Sbjct: 121 RN--AAFTRCVEECVELLEYLGMPVLRAKGEAEALCAQLNNEGHVGACITADSDAFLFGA 178
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY + DIE LG R L+ +ALL+GSD+ GV G G E+A +
Sbjct: 179 KTVVKVLRSNCKEPFECYHIADIESGLGLKRKQLVAMALLIGSDHDLHGVPGFGLETALR 238
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ +L ++ G
Sbjct: 239 FVQLFDEDEILDKLHEIG 256
>gi|410076602|ref|XP_003955883.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
gi|372462466|emb|CCF56748.1| hypothetical protein KAFR_0B04510 [Kazachstania africana CBS 2517]
Length = 988
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 17/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 727 MITDVQELLSRFGIPFVTAPMEAEAQCAELIALGLVDGIITDDSDVFLFGGTKVYKNLF- 785
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ YV Y D IE+ LG R +I LALLLGSDY+ G++G+GP S+ +I+ D
Sbjct: 786 QDKKYVEFYNYDTIEKSLGIDRKKMIELALLLGSDYTTGIKGMGPVSSMEILAEFDDLKN 845
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ +EG F K+ S+ + F+ + ++ +N E+ ++ T P V DAY
Sbjct: 846 FKEWYNEG-QFDKKKLESQNK---FQKDLRKRLVNNEVTLDDT-------FPSELVFDAY 894
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+P+ D ++ V R WP EK+DE ++P I E + R+
Sbjct: 895 LHPEV---DHDSTPFVWGDPDLDMLRTFMKIR--LNWPQEKSDEALVPLIREINGRK 946
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---FLRGL 57
MGV + W+I+ + + L LQ++R+ ID S WI Q + P+ + L + G
Sbjct: 1 MGVHSYWEIVGPTARPVRLESLQDRRMAIDASIWIYQFLKAIRD--PEGNALKNSHILGF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +P +K +T + R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPLLKRNTIKAR 91
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 119/468 (25%), Positives = 192/468 (41%), Gaps = 68/468 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG+K+LW++L + L HL + V IDLS W+ + NV + + +LR LF R
Sbjct: 1 MGIKDLWNLLTPHSEKKSLFHLNGQVVAIDLSGWVCESLNVVDYF--VHPRFYLRNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK--NLDKMSSLRRNMGSE- 117
L+ + +FV +GS P +K +R + K N DK ++ G+E
Sbjct: 59 TYYLLQIGIIPVFVLEGSAPPLKYGVIIKRNQTQFRGVPPRKTANCDKAGGTQKPNGTES 118
Query: 118 ----------FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
F ++K+ + L S+G+ C++ EAEA CA LN + + G S DSD F
Sbjct: 119 KAPSEQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAYLNHDGMVYGVISQDSDCF 178
Query: 168 LFGARTVYRDIWLGER--GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLG 224
+GA V+R+ + G V Y+MD I + G+ ++ + +L G DYS GV G+G
Sbjct: 179 AYGAVRVFRNFCASQSGGGSVDVYDMDKIRMVMDLGQEKIVAMGILSGCDYSPAGVPGVG 238
Query: 225 PESACQIVKSVGDNVVLQRIAS--------------------------EGLSFVKRAKNS 258
E +++ VL RI S +G +FV R
Sbjct: 239 REMINRLLNIYHSRDVLARIRSWRATADRLTEQEIKAEDKNVCADCGHQGKTFVHRRAGC 298
Query: 259 KKEGWSFKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEA 312
+ C+ NQ N+ T+ ++R+ P ++ + KC E
Sbjct: 299 QDCRTKVGCDESRWK-NQRANIK-TELDIKRKALQDPDFPPEAIVSEFMERKC-----EL 351
Query: 313 VHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDL 372
L + + A QW + + P L LR N
Sbjct: 352 PPLDLEWRQPNIVKFIRNIANLLQWNEIYSFIKLFPLFTRWQL---LTLRRN-------- 400
Query: 373 PLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES 420
P + + VK I K R +G FE+ W++ + S +VP D +++
Sbjct: 401 PSRGISVKLEPDYIKKKRSPKGVASFEIIWKDDGSIFSGLVPDDQLQA 448
>gi|164663201|ref|XP_001732722.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
gi|159106625|gb|EDP45508.1| hypothetical protein MGL_0497 [Malassezia globosa CBS 7966]
Length = 1109
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E +AL G+P L EAEAQCA L ++ L DG + DSD+FLFG VYR+++
Sbjct: 781 MTAEIQALLRIFGLPYLTAPMEAEAQCAQLAMQHLVDGIITDDSDVFLFGGTPVYRNMFN 840
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
R V CY M+D+ R+LG R LI LA LLGSDY++G+ G+GP A +I+ +
Sbjct: 841 NRRS-VECYWMNDMHRELGLSRERLIQLAFLLGSDYTEGLPGVGPVLAMEILSLFPGDYA 899
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNK-EESLNQEINVNGTDHSLQRETPFSQVIDA 299
L E V+ + + K + + +L +++ L E P V A
Sbjct: 900 LVHF-REWWQHVQIGADDEVHDARSKVRRRIKRALRDKVH-------LSEEWPDPLVQQA 951
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA---QFFQWPPEKTDEYILP 348
Y P+ +D V + A L + A ++ +WPP KTD+Y+ P
Sbjct: 952 YWEPQVDDSDEPFV--------WGQADLDAIRAFLQEYLRWPPSKTDQYVQP 995
>gi|63098616|gb|AAY32559.1| single strand DNA repair-like protein [Triticum monococcum]
Length = 646
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 9/257 (3%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS WIV ++ P + +R F
Sbjct: 1 MGVGGSFWDLLKPYARQEGPVYLRGRRVAVDLSFWIVSHSTAIRARSPHARRPHVRNTFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNLDKMSSLRR 112
R +L A + +FV DG +K R GS V + + + + +
Sbjct: 61 RTLSLFAKMGAFPVFVVDGEPSPLKSQARAARFFRGSGVDPPASSSAEAEGEASAPAPVK 120
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ F+ +K+ L +LG+P L EAEA CA LN E D C +SDSD FLFGA+
Sbjct: 121 ARNAIFTRCVKDCVELLKNLGMPVLWAKGEAEALCAQLNNEGEVDACITSDSDAFLFGAK 180
Query: 173 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQI 231
TV + + + CY + DIE +G R ++ +ALL+GSD+ GV G G E+A +
Sbjct: 181 TVIKVMRSNCKEPFECYNIVDIESGIGLKRKQMVAMALLIGSDHDLHGVPGFGVETALRF 240
Query: 232 VKSVGDNVVLQRIASEG 248
V+ ++ +L ++ G
Sbjct: 241 VRLFDEDQILDKLHEIG 257
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 25/264 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG+K+LW++L + PL L K V IDLS W+ + NV + + +LR LF R
Sbjct: 1 MGIKDLWNLLTPYCEKKPLFELNRKVVAIDLSGWVCESLNVVDYF--VHPRFYLRNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN------------------SGSEVTQDDK 102
L+ +FV +G+ P +K +R +G + + D+
Sbjct: 59 TCYLLTTGIVPVFVLEGAAPPLKYGVIIQRNQIQFRGARPKKAADCDKEATGGDKRKQDE 118
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +RN F ++K+ + L S+G+ C++ EAEA CA LN E+L G S
Sbjct: 119 PGKRAPEQKRN---RFHHVLKQCEELLSSMGLVCVQAPGEAEALCAHLNRENLVHGIISQ 175
Query: 163 DSDIFLFGARTVYRDIWLGERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYS-QGV 220
DSD F +G VYR+ + G V Y++++I R + G+ ++ + +L G DYS GV
Sbjct: 176 DSDCFAYGGVRVYRNFCASQNGGSVEIYDLENIRRVMDLGQEKIVVMGILSGCDYSPAGV 235
Query: 221 RGLGPESACQIVKSVGDNVVLQRI 244
G+G E ++++S +L RI
Sbjct: 236 PGVGRELVHRLIRSYPSWEILDRI 259
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
Length = 1513
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 92 NSGSEVTQDDKNL-----------------------DKMSSLRRNMGSEFSCMIKEAKAL 128
N G+ VT+D KN+ D+ L RN S M E + L
Sbjct: 786 NMGNSVTEDKKNVQFGVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQEL 845
Query: 129 GLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVC 188
G+P + EAEAQCA + L +L DG + DSD+FLFGAR+VY++I+ ER YV
Sbjct: 846 LQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIF-DERKYVET 904
Query: 189 YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS-- 246
Y M DIE +LG R +I +ALLLGSDY++GV G+G +A +++ S + L +
Sbjct: 905 YFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWV 964
Query: 247 -------EGLSFVKRAKNSKKEGWSFKCNNKEESLNQ----EINVNGTDHS--------- 286
G V+ +S+K G ++ S N + NV+ +H+
Sbjct: 965 ESPDPNILGKVNVETGSSSRKRGSKVGSGDQSHSKNNMDAFDENVSQNEHNESVDDIQSG 1024
Query: 287 ----------------LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV 330
+ P VI AY++P+ S LF L ++
Sbjct: 1025 KQIFMDKHRNVSKNWHIPSSFPSETVISAYASPQVDQ--STEPFSWGKPDLFV---LRKL 1079
Query: 331 CAQFFQWPPEKTDEYILPKIAE 352
C + F W +K DE +LP + E
Sbjct: 1080 CLEKFGWGNQKADELLLPVLKE 1101
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV LW++L + + + L KR+ ID S W++Q K+ R + ++ L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFM---KAMRDEKGEMVRNGHLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
F R+ L+ L +FV DG PA+K T RRR
Sbjct: 58 FFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRR 93
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 27/234 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTDKLFLRGLFH 59
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + P + L+ LF
Sbjct: 1 MGVKELWSVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDFFIHP---RHHLKNLFF 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQDDKNLDKMSS 109
R LI +FV +G P +K +R +SGS + +N DK
Sbjct: 58 RTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKDSGSS---NKENTDKTKE 114
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
R + F+ ++K+ + L +S+G+ C++G EAEA CA LN L DG S DSD F +
Sbjct: 115 KGR---TRFNHVLKQCENLLISMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAY 171
Query: 170 GARTVYRDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
GA VYR+ + G V Y+M DI ++ FG+N +I +ALL G DY
Sbjct: 172 GAVRVYRNFSVSTQGAQAAAGGAVDIYDMRDICSRIDFGQNKIIVMALLCGCDY 225
>gi|195014132|ref|XP_001983964.1| GH15274 [Drosophila grimshawi]
gi|193897446|gb|EDV96312.1| GH15274 [Drosophila grimshawi]
Length = 749
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW IL + P+ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWTILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLD-----KMSSLRRNM 114
LI +FV +G P +K +R V DK+ D K ++L +
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDKDAQAPPKQAALNGDK 118
Query: 115 G-SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
G + F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GAR
Sbjct: 119 GRTRFNNVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKYGLVDGVISQDSDCFAYGARR 178
Query: 174 VYRDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
VYR+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 179 VYRNFSVSTQGAQAAAGGAVDIYDMQEICTRIDFGQQKVIVMALLCGCDY 228
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 120/241 (49%), Gaps = 20/241 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW IL S ++ PL + V +DLS WI +KS P L LR LF R
Sbjct: 1 MGVHGLWGILSSVQEYRPLSKIGCDSVAVDLSIWICG----DKSITP-LPALHLRNLFFR 55
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN--SGSEVTQ--DDKNLDKMSSLRRNMGS 116
L L+ N I V DG P++K ++R +G TQ NL+++
Sbjct: 56 LVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKITTQKCTKPNLNRI--------- 106
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
FS + +E L S G+P ++ EAEA CA LN L D C ++D D FL+GA TVYR
Sbjct: 107 RFSKVSQECIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDAFLYGAETVYR 166
Query: 177 DIWLGERGYVVC-YEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ R VC + M I L + L+ L +LLG DY + GV LGP A +++ S
Sbjct: 167 HFSMDSRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSRLGPVGALRLISS 226
Query: 235 V 235
+
Sbjct: 227 L 227
>gi|403217913|emb|CCK72405.1| hypothetical protein KNAG_0K00370 [Kazachstania naganishii CBS
8797]
Length = 979
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 28/272 (10%)
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
+D D+ +R+ M+++ + L G+P + EAEAQCA L +L DG
Sbjct: 696 EDDLFDQQVKDKRDADEVTPQMVEDIQELLSRFGIPFIVSPMEAEAQCAELLGLNLVDGI 755
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
+ DSD+FLFG VY++++ +R YV Y+ + I R LG R +I LALLLGSDY+ G
Sbjct: 756 ITDDSDVFLFGGTKVYKNLF-QDRKYVEYYDYETIVRSLGIDRAQMIELALLLGSDYTPG 814
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEG-LSFVKRAKNSKKEGWSFKCNNKEESLNQEI 278
++ +GP S+ +I+ GD +R EG L+ ++K++K F+ + ++ + ++
Sbjct: 815 IKSMGPVSSVEILAEFGDLSEFKRWYEEGQLNIEAQSKDNK-----FRRDLRKRLVKNDV 869
Query: 279 NVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFF 335
L + P VIDAY +P+ + + + F H RL
Sbjct: 870 -------LLDPDFPSGTVIDAYLHPEVDHDKTSFRWSPPDLDMLRTFLHRRLG------- 915
Query: 336 QWPPEKTDEYILPKIAERDL-RRFANLRANTL 366
WP EK+DE ++P I RD+ RR + R TL
Sbjct: 916 -WPDEKSDEVLVPLI--RDINRRSSKGRQTTL 944
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---FLRGL 57
MGV + WDI+E + + L L++K++ ID S WI Q + P+ + + + G
Sbjct: 1 MGVHSFWDIVEPTARPVRLESLEDKKMAIDASIWIYQFLKAMRD--PEGNAIKNSHVTGF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +P +K T + R
Sbjct: 59 FRRICKLLYFGIKPVFVFDGGVPVLKRKTIKAR 91
>gi|51013165|gb|AAT92876.1| YGR258C [Saccharomyces cerevisiae]
Length = 1031
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L LG+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRLGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|348681509|gb|EGZ21325.1| hypothetical protein PHYSODRAFT_455731 [Phytophthora sojae]
Length = 502
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 117/241 (48%), Gaps = 21/241 (8%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M+ E AL GVP L EAEAQCA L L DG + DSDIF FG + VY++I+
Sbjct: 209 MVAEVMALLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVITDDSDIFPFGGQRVYKNIFH 268
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ +V + DIER+LGF R +I LALLLGSDY+ GVRG+G +A +I +
Sbjct: 269 HQK-FVEAFSARDIERELGFSREQIIALALLLGSDYTDGVRGIGIVNATEIAAAYPGIEG 327
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR----------- 289
L+ F + +K G ++ E ++E +V QR
Sbjct: 328 LREFKEWVREFDVAKEAERKTGEELDGDS--EGNSEEDDVETARERFQRSHTTVRRKWEL 385
Query: 290 --ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 347
E P QV+ AY +P+ SEA A L + L CA F W +K+D +L
Sbjct: 386 GDEFPSKQVVQAYMSPQVDR--SEARFSWSAPDL---SALRNYCANAFGWDQQKSDGVLL 440
Query: 348 P 348
P
Sbjct: 441 P 441
>gi|325192518|emb|CCA26951.1| DNA repair protein putative [Albugo laibachii Nc14]
Length = 939
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 16/245 (6%)
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+M M+++ L GVP L EAEAQCA L L DG + DSDIF FG
Sbjct: 643 RDMEGFDDEMVEQVMELLTLFGVPFLVCPMEAEAQCATLEQLGLVDGIVTDDSDIFPFGG 702
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
VY++I+ ++ +V ++ DIER+LGF R +I+LALLLGSDY+ GVRG+G +A +I
Sbjct: 703 TKVYKNIFHHQK-FVEAFDTRDIERELGFTRADMISLALLLGSDYTPGVRGIGIVNAAEI 761
Query: 232 VKSVGDNVV-LQRIASEGLSF-VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
+ S G + L+ + F V N +KE K + E ++ + T S++R
Sbjct: 762 ISSFGSSSAGLKEFKAWIEEFDVHEEANRRKE--KRKGEEELEKMSPKDRFKYTHASVRR 819
Query: 290 -----ET-PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 343
ET P +QV++AY +P+ + + L L C Q F W K D
Sbjct: 820 KWELGETFPNAQVMEAYLHPQV-----DTCSKKFQWSLPDFTELKNYCTQVFGWEMNKID 874
Query: 344 EYILP 348
+ P
Sbjct: 875 GMLTP 879
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV+NLW +L + + + L+NKR+ +D S W+VQ + + K L G FH
Sbjct: 1 MGVQNLWLLLSPVGRQIEIESLENKRLAVDASIWLVQFVKAMRDDQGHMIKNAHLIGTFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T RR
Sbjct: 61 RVSKLLHYGIRPVFVFDGQTPVLKQQTLERR 91
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium
distachyon]
Length = 1460
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 134/274 (48%), Gaps = 52/274 (18%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 866 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 925
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ +R YV Y M DIE +LG R+ LI +ALLLGSDY++G+ G+G +A ++V + +
Sbjct: 926 F-DDRKYVETYFMKDIESELGLTRDQLIRMALLLGSDYTEGISGIGIVNAIEVVHAFSEE 984
Query: 239 VVLQRI------------------ASEGLSFVKRAKN-SKKEGWSFK-----------CN 268
LQ+ S+G + K N S ++G S + +
Sbjct: 985 DGLQKFREWIESPDPAILGKLEKETSDGSTRRKSGGNESSEKGNSLEPECVEGSDGKHSS 1044
Query: 269 NKEES-----LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQ 323
N+ E +N+ NV+ H + P VI AY +P+ ++ R F
Sbjct: 1045 NETEHIKKIFMNKHRNVSKNWH-IPSTFPSETVISAYISPQV----DDSTER------FS 1093
Query: 324 HAR-----LHQVCAQFFQWPPEKTDEYILPKIAE 352
R L ++C + F W EK DE +LP + E
Sbjct: 1094 WGRPDLSLLRKLCWERFGWNKEKADELLLPVLRE 1127
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW +L + + + L KR+ +D S W+VQ + + + + G
Sbjct: 1 MGVHGLWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMVRDAHILGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
R+ L+ L +FV DG+ PA+K T RRR
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRTLASRRR 93
>gi|323354903|gb|EGA86736.1| Rad2p [Saccharomyces cerevisiae VL3]
Length = 998
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|349578461|dbj|GAA23627.1| K7_Rad2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1031
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|151943533|gb|EDN61844.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|256272689|gb|EEU07666.1| Rad2p [Saccharomyces cerevisiae JAY291]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|365765505|gb|EHN07013.1| Rad2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|6321697|ref|NP_011774.1| Rad2p [Saccharomyces cerevisiae S288c]
gi|131811|sp|P07276.2|RAD2_YEAST RecName: Full=DNA repair protein RAD2
gi|172329|gb|AAA66928.1| RAD2 [Saccharomyces cerevisiae]
gi|1323470|emb|CAA97287.1| RAD2 [Saccharomyces cerevisiae]
gi|285812449|tpg|DAA08349.1| TPA: Rad2p [Saccharomyces cerevisiae S288c]
gi|392299514|gb|EIW10608.1| Rad2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|207344901|gb|EDZ71889.1| YGR258Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|259146759|emb|CAY80016.1| Rad2p [Saccharomyces cerevisiae EC1118]
Length = 1031
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKD 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays]
Length = 1531
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 132/273 (48%), Gaps = 50/273 (18%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 914 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 973
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ +R YV Y M DIE +LG R LI +ALLLGSDY++GV G+G +A ++V + +
Sbjct: 974 F-DDRKYVETYFMKDIESELGLSREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPEE 1032
Query: 239 VVLQR------------IASEGLSFVKRAK---------NSKKEGWSFKC---NNKEESL 274
LQ+ + R+K + K +G +C ++ ++S
Sbjct: 1033 DGLQKFKEWIESPDPSIFGKLHMEISGRSKKRKLDENDSDGKGKGLEPECIQGSDDKQSS 1092
Query: 275 NQEINVNGTDHSLQRET----------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH 324
N++ +V S R P +V++AY +P+ S + F
Sbjct: 1093 NEDEHVKEIFMSKHRNVSKNWHVPATFPSEKVVNAYISPQVDS----------STEPFSW 1142
Query: 325 AR-----LHQVCAQFFQWPPEKTDEYILPKIAE 352
R L ++C + F W EK DE +LP + E
Sbjct: 1143 GRPDLGLLRRLCWERFGWGKEKADELLLPVLRE 1175
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV LW++L + + + L KRV +D S W+VQ ++ R + ++ L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRVAVDASIWMVQFM---RAMRDDSGEMVRDAHLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 58 FLRRICKLLFLRVRPVFVFDGATPALKRRT 87
>gi|255711770|ref|XP_002552168.1| KLTH0B08756p [Lachancea thermotolerans]
gi|238933546|emb|CAR21730.1| KLTH0B08756p [Lachancea thermotolerans CBS 6340]
Length = 1023
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 18/249 (7%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ M+ E + L G+P + EAEAQCA L + L DG + DSDIFLFG VY+++
Sbjct: 758 AAMVAEVQDLLTRFGIPFMTAPMEAEAQCAELLMLGLVDGIITDDSDIFLFGGDKVYKNM 817
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ E+ YV Y D ++++LG R I LA LLGSDY+ GV+ +GP SA +I+ G+
Sbjct: 818 FQ-EKNYVEYYYSDLMKKELGLDREKFIELAQLLGSDYTTGVKSVGPVSAMEILAEFGNL 876
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
+ S+G + K ++E +F+ +++ + E+ L E P V +
Sbjct: 877 HNFRNWYSDG----QFNKKKQEEEPTFEKRLRKKLVTSEV-------ILDTEFPSDLVKE 925
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
AY P+ D +A + RL WP EKTDE ++P I E + R+
Sbjct: 926 AYLRPEV---DHDATRFTWG--VPDLDRLRSFFQSTIGWPQEKTDEVMIPLIREVNNRKK 980
Query: 359 ANLRANTLA 367
++ NTL
Sbjct: 981 TGIQ-NTLT 988
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LWDI+ K + L L NKR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHALWDIVGPTAKPVRLESLSNKRLAVDASIWIYQFLKAVRDKEGNAMRYSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T ++R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRRTIQQR 91
>gi|449283697|gb|EMC90302.1| Flap endonuclease GEN like protein 1, partial [Columba livia]
Length = 542
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Query: 71 LIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 130
L+FV +G P +K T +R + K R S F M+KE L
Sbjct: 5 LVFVMEGEAPKLKADTMSKR-------NEMRYGPSKKVGAARTGRSLFKAMLKECLELLE 57
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCY 189
LGVP ++ EAEA CA LN + DGC ++D D+FL+GA TVYR+ + + Y+ CY
Sbjct: 58 CLGVPWVQAAGEAEAMCAYLNAKGHVDGCITNDGDVFLYGAHTVYRNFAMNAKDPYLDCY 117
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 244
M I+ LG R SLI LA+LLG DY +GV G+G E A +++ ++ +LQR
Sbjct: 118 TMSSIKETLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIDTLQGQNLLQRF 173
>gi|366994113|ref|XP_003676821.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
gi|342302688|emb|CCC70465.1| hypothetical protein NCAS_0E03950 [Naumovozyma castellii CBS 4309]
Length = 1000
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 31/246 (12%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI++ + L GVP + EAEAQCA L L DG + DSD+FLFG +Y++++
Sbjct: 740 MIQDVQELLSRFGVPYITAPMEAEAQCAELLQLKLVDGVVTDDSDVFLFGGSKIYKNMF- 798
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I R LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 799 HEKNYVEFYDSESILRNLGLDRENMIELAELLGSDYTNGIKGMGPVSSLEVLAEFGNLKE 858
Query: 241 LQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+ +EG F K+ K+EG + F+ + ++ +N +I L P V DA
Sbjct: 859 FRNWYNEG-QFDKK----KQEGETKFQKDLRKRLVNNKI-------VLDSNFPSELVHDA 906
Query: 300 YSNPKCYSADSEAVH------RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 353
Y NP+ D+ A +L L HA WP EK+DE ++P I
Sbjct: 907 YINPEV-DHDTTAFKWGLPDLDLLRLFLKTHA----------GWPQEKSDEVLIPLIRTI 955
Query: 354 DLRRFA 359
+ R+ A
Sbjct: 956 NNRKKA 961
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ----TDKLFLRG 56
MGV + WD++ + + L LQ+K++ +D S WI Q K+ R Q + G
Sbjct: 1 MGVHSFWDVVGPTARPVRLKSLQDKKMAVDASIWIYQFM---KAVRDQDGNRVSNSHITG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +PA+K T ++R
Sbjct: 58 FFRRICKLLYFGIQPVFVFDGGVPALKRDTIKQR 91
>gi|24658219|ref|NP_647943.2| XPG-like endonuclease [Drosophila melanogaster]
gi|74870583|sp|Q9VRJ0.1|GEN_DROME RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease; Short=DmGEN
gi|7295491|gb|AAF50805.1| XPG-like endonuclease [Drosophila melanogaster]
gi|21711755|gb|AAM75068.1| RE33588p [Drosophila melanogaster]
gi|220949066|gb|ACL87076.1| Gen-PA [synthetic construct]
Length = 726
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----S 116
LI +FV +G P +K +R N KN + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECTQSQPSKGDKGRS 117
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR
Sbjct: 118 RFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYR 177
Query: 177 DIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 178 NFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|6522575|emb|CAB62019.1| hypothetical protein [Arabidopsis thaliana]
Length = 224
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 133/234 (56%), Gaps = 40/234 (17%)
Query: 377 VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEF------- 429
+P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+E ACPEKI+EF
Sbjct: 1 MPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAK 60
Query: 430 --EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSSRVVMSEDWTAAT 487
+ + +Q + S P S++ ++ L+ LD+ NST S SR + E
Sbjct: 61 KKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL---NST----SLVSRSTLEEA-EQEN 112
Query: 488 EIDLTRRQDL--LLDAESKSNAN------------MSCYPTGSTAAKAEIIDLVSPSP-V 532
E +++ D L+D+ + N N MS +P + E+IDL+SP P
Sbjct: 113 EQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFP---LYPETEVIDLISPCPEA 169
Query: 533 QCRNVSRI---REMSDQPINT-IELSDSETEKSPELERKARALRMFIASIRDDI 582
+ R+VSR ++ D + T IELSDSET+ E +KAR LR+F+ +IR DI
Sbjct: 170 RSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKARELRIFLQNIRKDI 222
>gi|5679043|gb|AAD46833.1|AF160893_1 GM10765p [Drosophila melanogaster]
gi|28460669|dbj|BAC57447.1| xpg like endonuclease [Drosophila melanogaster]
Length = 726
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----S 116
LI +FV +G P +K +R N KN + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECTQSQPSKGDKGRS 117
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR
Sbjct: 118 RFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYR 177
Query: 177 DIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 178 NFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|194866945|ref|XP_001971974.1| GG14140 [Drosophila erecta]
gi|190653757|gb|EDV51000.1| GG14140 [Drosophila erecta]
Length = 726
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----S 116
LI +FV +G P +K +R N KN + S + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECSQSQAPKGDKGRS 117
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR
Sbjct: 118 RFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVYR 177
Query: 177 DIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 178 NFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195587930|ref|XP_002083714.1| GD13208 [Drosophila simulans]
gi|194195723|gb|EDX09299.1| GD13208 [Drosophila simulans]
Length = 726
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMG-SE 117
LI +FV +G P +K +R L ++ + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQAPKGDKGRSR 118
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR+
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 178 IWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195376315|ref|XP_002046942.1| GJ12207 [Drosophila virilis]
gi|194154100|gb|EDW69284.1| GJ12207 [Drosophila virilis]
Length = 747
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW IL + P+ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWSILTPHAERKPICELRGKKVAIDLAGWVCESLNVVDYF--VHPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---SGSEVTQDDKNLDKMSSLRRNMG-S 116
LI +FV +G P +K +R G D ++ +++ G +
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVRPKDKDAPAPTQAAAKKDKGRT 118
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
F+ ++K+ + L L++G+ C++G EAEA CA LN L DG S DSD F +GA VYR
Sbjct: 119 RFNHVLKQCENLLLAMGIQCVQGPGEAEAYCAYLNKHGLVDGVISQDSDCFAYGAVRVYR 178
Query: 177 DIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + G V Y+M I + FG+N +I +ALL G DY
Sbjct: 179 NFSVSTQGAQAAAGGAVDIYDMQTICAHMDFGQNKVIVMALLCGCDY 225
>gi|156836721|ref|XP_001642408.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112928|gb|EDO14550.1| hypothetical protein Kpol_298p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1037
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M+ + L G+P + EAEAQCA L L L DG + DSD+FLFG +Y++++
Sbjct: 776 MVIAVQELLSRFGIPYIVAPMEAEAQCAELLLLKLVDGIITDDSDVFLFGGAKIYKNMF- 834
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y++ I L R ++I LALLLGSDY+ GV+GLGP + +++ G
Sbjct: 835 QEKKYVEFYDVQSINSNLALDRKNMIDLALLLGSDYTNGVKGLGPVLSMEVLADFGTLER 894
Query: 241 LQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+ EG+ F K SK+E S F+ + +++ + E+ L E P VID+
Sbjct: 895 FKEWYDEGM-FDK----SKQESDSKFRKDLRKKLIKNEV-------VLSSEFPSKLVIDS 942
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
Y NP+ + V + + Q+ WP EK+DE ++P I + + R+
Sbjct: 943 YINPEVDHDKTSFVWGTPDLDMLREFMRRQIG-----WPQEKSDEILIPLIKDINKRK 995
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDIL + + L L ++++ +D S WI Q L+ V + + G F
Sbjct: 1 MGVHSLWDILGPTARPVRLESLHDQKMAVDASIWIYQFLKAVRDNKGNAVKDAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +PA+K +T + R
Sbjct: 61 RICKLLFYGIKPVFVFDGGVPALKKATIQER 91
>gi|367004070|ref|XP_003686768.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
gi|357525070|emb|CCE64334.1| hypothetical protein TPHA_0H01260 [Tetrapisispora phaffii CBS 4417]
Length = 1051
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIK + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 790 MIKSVQELLTRFGIPYIVAPMEAEAQCAELLKLKLVDGIITDDSDVFLFGGSKVYKNMF- 848
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ D + +LG R++LI LALLLGSDY+ G++G+GP S +I+ G
Sbjct: 849 HEKNYVEFYDQDKLTVQLGLERSNLIDLALLLGSDYTSGIKGIGPVSGIEIIAEFGSLEN 908
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ +G + KN++K F+ + +++ + EI L P + V +AY
Sbjct: 909 FRDWYMDG----QFDKNNQKTESKFQKDLRKKLVKNEI-------ILDSNFPSAAVRNAY 957
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352
P+ S + V + + L +V +W EK+DE ++P I +
Sbjct: 958 LYPEVDSDKTNFTWGVPDLDMLRTFMLKEV-----RWTQEKSDEVLIPLIKD 1004
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI+ K + L L++K + +D S WI Q L+ V + + + G F
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLEDKVMAVDASIWIYQFLKAVRDNEGNSVNNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGVKPVFVFDGGVPVLKRETIRQR 91
>gi|195337621|ref|XP_002035427.1| GM13928 [Drosophila sechellia]
gi|194128520|gb|EDW50563.1| GM13928 [Drosophila sechellia]
Length = 726
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMG-SE 117
LI +FV +G P +K +R L ++ + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVKPKNSPECTQSQAPKADKGRSR 118
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR+
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRN 178
Query: 178 IWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195491935|ref|XP_002093778.1| GE20569 [Drosophila yakuba]
gi|194179879|gb|EDW93490.1| GE20569 [Drosophila yakuba]
Length = 727
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMG-SE 117
LI +FV +G P +K +R L ++ + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQAPKGDKGRSR 118
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR+
Sbjct: 119 FNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAIRVYRN 178
Query: 178 IWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 179 FSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>gi|195167797|ref|XP_002024719.1| GL22468 [Drosophila persimilis]
gi|194108124|gb|EDW30167.1| GL22468 [Drosophila persimilis]
Length = 754
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYF--VHPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIK--LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
LI +FV +G P +K + T R L +D + ++ + F
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKGQVITKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VYR+
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 179 WLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>gi|365983062|ref|XP_003668364.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
gi|343767131|emb|CCD23121.1| hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Length = 1021
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M+++ + L G+P + EAEAQCA L +L DG + DSD+FLFG VY++++
Sbjct: 760 MVQDVQDLLSRFGIPFIVAPMEAEAQCAELLHLNLVDGIVTDDSDVFLFGGSKVYKNMF- 818
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ I R +G R ++I +A LLGSDY+ GV+G+GP S+ +I+ G+
Sbjct: 819 HEKNYVEFYDSASILRNIGLDRINMIEMAQLLGSDYTNGVKGMGPVSSLEIIAEFGNLRK 878
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ EG K+ +N K F+ + ++ + EI + P V DAY
Sbjct: 879 FKEWYEEGQFNEKKQENESK----FEKDLRKRLVKNEIVFDSN-------FPSELVKDAY 927
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
NP+ ++ + L L + + WP EK+DE ++P I + + R+
Sbjct: 928 LNPEVDHDKTKFIWNFPDLDL-----LREFLKRKIGWPQEKSDEVLIPLIQDINKRK 979
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD++ K + L LQ+K++ ID S WI Q L+ V + + G F
Sbjct: 1 MGVHSFWDVVARTSKPVRLESLQDKKMAIDASIWIYQFLKAVRDENGNKVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPVLKRETIRQR 91
>gi|74196654|dbj|BAE34428.1| unnamed protein product [Mus musculus]
Length = 739
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 186/443 (41%), Gaps = 94/443 (21%)
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAK 126
+N L+FV +G P +K +R TQ S ++ S F +++E
Sbjct: 1 MNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKSVLRECL 53
Query: 127 ALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-Y 185
+ LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ + + +
Sbjct: 54 EMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTMNTKDPH 113
Query: 186 VVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRI 244
V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +LQR
Sbjct: 114 VDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQSLLQRF 173
Query: 245 AS----------------------------------EGLSFVKRAKNSKKEGWSFKCNNK 270
G K K + + + C +
Sbjct: 174 NQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYDYLCPCE 233
Query: 271 EESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH 324
+ +++ +++++++ PF +VI + K +++L +Q
Sbjct: 234 WHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLKPITYQR 284
Query: 325 ARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPV 379
L + Q +WP E +L + D+ R+ +N L P+
Sbjct: 285 PDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ----------PI 334
Query: 380 KCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVE 428
+ I+K R G C E+ WE E Y ++ ++ A L E+A P+ +
Sbjct: 335 R-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAYPDAVAV 389
Query: 429 FE----ERRALRQPK-KSKPKSS 446
++ E + +Q K+KPK S
Sbjct: 390 YQKQLSETKGRKQKSMKNKPKGS 412
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 133/262 (50%), Gaps = 24/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKL-----FL 54
MGV NL +I++ KK + L K + ID + Q L ++ + P D L
Sbjct: 1 MGV-NLKEIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSHL 59
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMS 108
GLF+R L+ I+V DG+ P K+ + +R L S + N+ +
Sbjct: 60 SGLFYRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAI 119
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+++G S M++EAK L ++G+P ++ E EA+ A L + + D C S D D L
Sbjct: 120 KYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLL 179
Query: 169 FGARTVYRDIWLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYS 217
FG+ V R+I + E+ YV V E+ ++E L + R LI +A+LLG+DY+
Sbjct: 180 FGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYN 239
Query: 218 QGVRGLGPESACQIVKSVGDNV 239
+ V G+GP++A +IVK GD +
Sbjct: 240 EKVPGIGPKTAIEIVKRFGDPI 261
>gi|406604494|emb|CCH44056.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 1010
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG VY++++
Sbjct: 742 TMIKEVQELLARFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGGKVYKNMF 801
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
E+ YV Y DIER+LG R LI +A LLGSDY++G++G+GP +A +I+ GD
Sbjct: 802 -HEKHYVEFYSSQDIERELGLTRQKLIEIAQLLGSDYTEGLKGIGPVNAMEILSHFGD 858
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW ILE + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSLWGILEPTSRAVRLESLSRKRMAVDASIWIYQFLKAVRDKSGNSLTSSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T +R
Sbjct: 61 RICKLLYFGIMPVFVFDGGAPVLKRETINKR 91
>gi|125980514|ref|XP_001354281.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
gi|121993075|sp|Q29FC1.1|GEN_DROPS RecName: Full=Flap endonuclease GEN; AltName: Full=Flap
structure-specific endonuclease GEN; AltName:
Full=Xpg-like endonuclease
gi|54642587|gb|EAL31334.1| GA10481 [Drosophila pseudoobscura pseudoobscura]
Length = 754
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYF--VHPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMG-SEF 118
LI +FV +G P +K +R V D ++ + + G + F
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VYR+
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 179 WLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 119/237 (50%), Gaps = 18/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + L G+P + EAEAQCA L L DG + DSD FLFG VY++++
Sbjct: 728 MITDVQELLRRFGIPYITAPMEAEAQCAELVKIGLVDGIITDDSDCFLFGGTKVYKNMF- 786
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ YV CY DD+ K+G R +LI LALLLGSDY++G++G+GP A +I+ G
Sbjct: 787 NQKQYVECYSQDDVVDKIGLTRKNLIELALLLGSDYTEGIKGIGPVLAMEILAEFGSLKN 846
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
++ E K K+ KK+ + + N N ++ L P S V DAY
Sbjct: 847 FKKWFDEK---TKTVKSDKKDQTALEKNLLGRIRNGKL-------FLPERFPDSVVFDAY 896
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+P+ SE V + ++ + +W +K DE ++P I RD+ R
Sbjct: 897 EHPEVDHDRSEFKWGVPNLDQIRSFLMYNL-----RWTQDKVDEVMIPLI--RDMNR 946
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ + + L L K++ +D S WI Q L+ V S + + G F
Sbjct: 1 MGVNSLWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDSEGNSLPQSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ IFV DG PA+K T +R
Sbjct: 61 RICKLLYFGIFPIFVFDGGAPALKRETINQR 91
>gi|242041837|ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
gi|241922167|gb|EER95311.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
Length = 1489
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 132/273 (48%), Gaps = 50/273 (18%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 867 SEMFAECQELLQMFGLPYIIAPTEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNI 926
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ +R YV Y M DIE +LG R LI +ALLLGSDY++GV G+G +A ++V + +
Sbjct: 927 F-DDRKYVETYFMKDIESELGLTREQLIRMALLLGSDYTEGVSGIGIVNAIEVVHAFPEE 985
Query: 239 VVLQR-----------------IASEGLSFVKR----AKNSKKEGWSFKC---NNKEESL 274
LQ+ + + G S ++ + K +G +C ++ ++S
Sbjct: 986 DGLQKFKEWIESPDPSIFGKLHVEASGRSKKRKLGGNDSDGKGKGLEPECIQGSDDKQSS 1045
Query: 275 NQEINVNGTDHSLQRET----------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH 324
N+ +V S R P V++AY +P+ + + F
Sbjct: 1046 NEAEHVKEIFMSKHRNVSKNWHIPATFPSESVVNAYISPQVDN----------SMEPFSW 1095
Query: 325 AR-----LHQVCAQFFQWPPEKTDEYILPKIAE 352
R L ++C + F W EK DE ++P + E
Sbjct: 1096 GRPDLGLLRKLCWERFGWGKEKADELLIPVLRE 1128
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV LW++L + + + L KRV +D S W+VQ ++ R + ++ L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRVAVDASIWMVQFM---RAMRDDSGEMVRDAHLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 58 FLRRICKLLFLRVRPVFVFDGATPALKRRT 87
>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 483
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 129/258 (50%), Gaps = 19/258 (7%)
Query: 101 DKNLDKMSSLR-RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
D +L K+ S + R+ M+ E +L GVP L EAEAQCA L L DG
Sbjct: 174 DTDLKKLRSRQLRDAEGITDDMVAEVMSLLRLFGVPFLVSPMEAEAQCAALEQLGLVDGV 233
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
+ DSDIF FG + VY++I+ ++ +V + DIE++LGF R +I LALLLGSDY+ G
Sbjct: 234 ITDDSDIFPFGGQRVYKNIFHHQK-FVEAFSARDIEQELGFSREQIIALALLLGSDYTDG 292
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSF--VKRAKNSKKEGWSFKCNNKEESLNQE 277
VRG+G +A +I + L+ F + A+ K++ ++++E++ +
Sbjct: 293 VRGIGIVNATEIAAAYPKIEGLREFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETVRER 352
Query: 278 INVNGTDHSLQR-------ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV 330
+ H+ R E P QV+ AY +P+ +D+ + A L
Sbjct: 353 FQRS---HATARRKWELGDEFPSKQVVQAYMSPQVDRSDAR-----FSWSAPDVASLRNY 404
Query: 331 CAQFFQWPPEKTDEYILP 348
CA+ F W +K+D + P
Sbjct: 405 CAKAFGWDQQKSDGVLKP 422
>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
Length = 254
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLST-----YRRRLNSGSEVTQDDKNLDKMSS 109
R LFHR+R +FV DG+ PA+K T RR G +K L
Sbjct: 26 RLLFHRVRP--------VFVFDGATPALKRHTNIARRRRREAQQGVLRKTAEKLLIAQLK 77
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+RN+G + A L GVP + AEAQCA L + L DG + D+D+FLF
Sbjct: 78 KQRNVGMPLKLNV--AIPLAAFKGVPTVSEPAAAEAQCAFLEVSGLVDGVVTDDNDVFLF 135
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR VYR I+ ++ YV Y+M D+ER+LG R L +ALLLGSDY++G G+G +A
Sbjct: 136 GARHVYRHIFENKK-YVEEYQMSDVERELGLTRERLAEMALLLGSDYTEGCGGIGIVNAV 194
Query: 230 QIVKSVGDNVVLQRIAS 246
++V++ LQR S
Sbjct: 195 EVVQAFPGLEGLQRFRS 211
>gi|50302949|ref|XP_451412.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640543|emb|CAH03000.1| KLLA0A09427p [Kluyveromyces lactis]
Length = 1011
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 120/238 (50%), Gaps = 21/238 (8%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI E ++L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 750 MIHEIQSLLSRFGIPYITAPMEAEAQCATLLQLKLVDGVITDDSDVFLFGGTHVYKNMF- 808
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y +D ++KLG R+ LI LA LLGSDY+ G+RG+GP +I+ G
Sbjct: 809 QEKNYVEYYSLDLFDQKLGLDRDKLIQLAQLLGSDYTPGLRGIGPVMGVEILAEFGSLKE 868
Query: 241 LQRIASEGLSFVKRAKNSKKEG-WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+ +EG F K+ K EG +F+ ++ ++ EI L P V DA
Sbjct: 869 FAKWYNEG-QFDKQ----KLEGETAFQKQLRKRLVSNEI-------ILDDNFPSEAVYDA 916
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
Y +P + D++ V +L Q W K+DE ++P I RDL +
Sbjct: 917 YIHP---TVDADKTKFVWGSPDLD--KLRSFLQQTIGWDKAKSDEVLIPLI--RDLNK 967
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---FLRGL 57
MGV +LWDI+ K + L L +R+ +D S WI Q ++ + D L + G
Sbjct: 1 MGVHSLWDIVSPVAKPVRLESLNERRMAVDASIWIYQFLKAMRN--KEGDALRNAHIIGF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +P +KL+T R R
Sbjct: 59 FRRICKLLYYGIKPVFVFDGGVPVLKLNTIRER 91
>gi|303270955|ref|XP_003054839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462813|gb|EEH60091.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 237
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 25/234 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E + L G+P + +EAEAQCA L+ E D + DSD FLFGA+T+YR+++
Sbjct: 1 MHAEVQQLLTLFGIPYIIAPQEAEAQCAWLDREGFVDAVITDDSDAFLFGAKTIYRNVFE 60
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ YV Y+ + ++ LG R + LALLLGSDY++GV G+G +A + VV
Sbjct: 61 SKK-YVEFYDANRVDADLGLDRAKMAQLALLLGSDYTEGVTGVGIVNALE--------VV 111
Query: 241 LQRIASEGLS----FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQV 296
L EGL+ +V ++ + K + K +L + L R+ P +V
Sbjct: 112 LNFPGVEGLTKFAEWVGESEFTGKPAAIREFKLKHRTLKKA-------WELPRDFPSERV 164
Query: 297 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
+DAY+NP S D+ + RL C + F W P +TD+ +LP +
Sbjct: 165 LDAYANP---SVDASREKFEWGEPDLDALRL--FCGEHFAWRPTQTDDLLLPVV 213
>gi|194750279|ref|XP_001957555.1| GF10471 [Drosophila ananassae]
gi|190624837|gb|EDV40361.1| GF10471 [Drosophila ananassae]
Length = 734
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P+ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWTVLTPHCERKPISELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN------SGSEVTQDDKNLDKMSSLRRNM 114
LI +FV +G P +K +R E T + + +
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKEATAGSQTQSQAPKAEKGR 118
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
+ F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA V
Sbjct: 119 -TRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRV 177
Query: 175 YRDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
YR+ + G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 178 YRNFSVSTQGAQAAAGGAVDIYDMREITTRMDFGQHKIIVMALLCGCDY 226
>gi|326527491|dbj|BAK08020.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1503
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 176/385 (45%), Gaps = 73/385 (18%)
Query: 23 QNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG-LFHRLRALIALNCGLIFVSDGSIPA 81
QN L+C N N Y + + +G L L A A+ + D +
Sbjct: 768 QNTSNSHKLAC------NTNDHYIGEISMVSQKGPLMDELVADDAIQKENVIQEDMNTTT 821
Query: 82 IKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR---NMGSE-----------FSCMIKEAKA 127
++++ + NS S + ++ D++S LR+ ++G+E S M E +
Sbjct: 822 SEINSTQLNENSDSHIISENNLEDEISFLRQEQVDLGNERRKLESHAESVSSEMFAECQE 881
Query: 128 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV 187
L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I+ +R YV
Sbjct: 882 LLQMFGLPYIIAPMEAEAQCAYMEINNLVDGVVTDDSDVFLFGARNVYKNIF-DDRKYVE 940
Query: 188 CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR---- 243
Y M DIE +LG R LI +A+LLGSDY++G+ G+G +A ++V + + LQ+
Sbjct: 941 TYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVVHAFPEEDGLQQFREW 1000
Query: 244 IASEGLSFVKR---------------AKNSKKEGWSF--KC-----NNKEESLNQEI--- 278
I S + + + S ++G S +C NN+ + Q I
Sbjct: 1001 IESPDPAILGKFDVESSGSSKRRKSGGNESCEKGNSLEPECVEGSDNNQSSNETQHIKEV 1060
Query: 279 ------NVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----L 327
NV+ H + P VI+AY +P+ ++ R F R L
Sbjct: 1061 FMSNHRNVSKNWH-IPSTFPSETVINAYISPQV----DDSTER------FSWGRPDLSLL 1109
Query: 328 HQVCAQFFQWPPEKTDEYILPKIAE 352
++C + F W EK DE +LP + E
Sbjct: 1110 RKLCWERFGWNKEKADELLLPVLKE 1134
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW +L + + + L KR+ +D S W+VQ + + + + G
Sbjct: 1 MGVHGLWGLLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMVRDAHILGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRT 87
>gi|168064381|ref|XP_001784141.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664341|gb|EDQ51065.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 435
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 12/248 (4%)
Query: 1 MGVKN-LWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV+ WD L K L L KR+ +DLS W+VQ Q K LR L
Sbjct: 1 MGVRGGFWDELRVVSKRKSLDWLHGKRLAVDLSYWVVQQQTAVGGL---VRKPHLRILLF 57
Query: 60 RLRALIALNCGL-IFVSDGSIPAIKLSTYRRRLN--SGSEVTQDDKN-LDKMSSLRRNMG 115
R+ LI+ L +FV DG+ P KL+ RL S S + + + + S++ N G
Sbjct: 58 RVVNLISRAGVLPVFVVDGTFPPEKLAVRMERLTLMSTSNILPNPQEFVTGESNIACNNG 117
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
F I E L LG+P L EAE CA L+ + L D C ++DSD FL GAR V
Sbjct: 118 --FQRRIDECVELLELLGMPVLHAAWEAEGLCAELDRDGLVDACVTADSDAFLHGARCVI 175
Query: 176 RDIWLGERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
+ + + + ++ Y+ +DI+ LG R +I LALL+G DY+ +GV G+G A ++V+
Sbjct: 176 KVLQMDSKVPIIETYDAEDIKTILGLDREHMIALALLMGCDYNKKGVVGIGCNRAIRLVR 235
Query: 234 SVGDNVVL 241
SV N V
Sbjct: 236 SVSSNKVF 243
>gi|444316930|ref|XP_004179122.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
gi|387512162|emb|CCH59603.1| hypothetical protein TBLA_0B07870 [Tetrapisispora blattae CBS 6284]
Length = 1155
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 19/238 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI + + L G+P + EAEAQCA L+NL+ L DG + DSD+FLFG VY++++
Sbjct: 894 MILDVQELLSRFGIPFITAPMEAEAQCAELINLK-LVDGIVTDDSDVFLFGGTKVYKNMF 952
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
E+ YV Y+ D I R LG R +I L LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 953 -HEKHYVEYYDNDVIFRNLGLDREYMIELVELLGSDYTTGIKGMGPVSSMEVLAEFGNLK 1011
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+ +EG F K SK+E K N ++ L +++ NG + + P S V DA
Sbjct: 1012 NFKEWYNEG-QFDK----SKQE----KENKFQKDLRKKLVKNGV--IFENDFPNSLVSDA 1060
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
Y NP+ DS A + L W EK+DE ++P I + R+
Sbjct: 1061 YMNPEV-DHDSTAFKWGVP----DLDMLRTFMRNKIGWQKEKSDEILIPLIRTINQRK 1113
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI+ K + L LQ+K++ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIVNPTAKPVRLDSLQDKKMAVDASIWIYQFLKAVRDDQGNAVKNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +F+ DG +P +K +T ++R
Sbjct: 61 RICKLLYFGIKPVFIFDGGVPVLKKNTIKKR 91
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 18/253 (7%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 717 EKLQKAKRDSDEVTENMISDVQELLKRFGIPYITAPMEAEAQCAELFRIGLVDGIITDDS 776
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ +V CY DDIE ++G R +LI LA+LLGSDY+QG++G+G
Sbjct: 777 DCFLFGGDRIYKNMF-NQKQFVECYFKDDIEDRIGLSRENLIELAILLGSDYTQGIKGIG 835
Query: 225 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
P A +I+ G L+R S F ++ K +K + + + +L I NG
Sbjct: 836 PVLAVEILAEFGS---LKRFKS---WFDEKTKTTKLDQVTLTPLQR--NLTNRIK-NGKL 886
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 344
+ L P + +AY +P+ S SE + + ++ V W E+ DE
Sbjct: 887 Y-LPDNFPDKVIFEAYQHPEVDSDKSEFKWGIPNLDQIRSFLMYNV-----NWSQERVDE 940
Query: 345 YILPKIAERDLRR 357
++P + RDL +
Sbjct: 941 VMVPLV--RDLNK 951
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV++LWDI+ + + L L K++ +D S WI Q +++ + PQ+ + G
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQS---HIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
F R+ L+ IFV DG +P +K T R N
Sbjct: 58 FFRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKN 93
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 689 EKLQKAKRDSDEVTEAMINDVQELLRRFGIPFITAPMEAEAQCAELFRIGLVDGIVTDDS 748
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ YV CY DD+ K+G R LI LALLLGSDY++G++G+G
Sbjct: 749 DCFLFGGDKIYKNMF-DQKQYVECYMQDDLSTKMGLTRKKLIELALLLGSDYTEGIKGIG 807
Query: 225 PESACQIVKSVGD 237
P A +I+ GD
Sbjct: 808 PVLAMEILAEFGD 820
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW I+ + + L L K++ ID S WI Q L+ V + G F
Sbjct: 1 MGVHSLWQIVGPSARPVRLEALSRKKLAIDASIWIYQFLKAVRDKDGNSLSSSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ IFV DG +PA+K T +R
Sbjct: 61 RICKLLYFGILPIFVFDGGVPALKRKTIVQR 91
>gi|401625605|gb|EJS43605.1| rad2p [Saccharomyces arboricola H-6]
Length = 1034
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 17/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 774 MIKEVQELLSRFGIPYVTAPMEAEAQCAELLQLKLVDGIITDDSDVFLFGGTKVYKNMF- 832
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G
Sbjct: 833 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGSLKN 892
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F K + ++ + F+ +++ +N E+ L + P V DAY
Sbjct: 893 FKDWYNNG-QFDKLKQETENK---FEKELRKKLVNNEV-------ILDEDFPSVMVYDAY 941
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
P+ + V + + + Q+ WP EK+DE ++P I + + R+
Sbjct: 942 MRPEVDHDTTPFVWGLPDLDMLRSFMKSQIG-----WPHEKSDEILIPLIRDVNSRK 993
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>gi|388583607|gb|EIM23908.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 1046
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E + L + G+P + EAEAQCA L +L D + DSD+FLFGA VY++++
Sbjct: 721 MTGEIQKLLRAFGIPYITAPMEAEAQCAKLAQMNLVDAVITDDSDVFLFGAPIVYKNMF- 779
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+R +V CY DIER L R+ LI LA +LGSDY+ G G+GP A +++
Sbjct: 780 NDRQFVECYVSSDIERDLSLSRDRLIELAHILGSDYTNGFPGVGPVMAMELLADFAHENT 839
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + S F+ N K++S N L +E P QV AY
Sbjct: 840 LVGFRDWWIKVQNGKDTSNDTSTRFRKNFKKKSKNL---------FLDKEFPDPQVKGAY 890
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
K S++ E V + L + + WP K D+ I+P
Sbjct: 891 YGAKTDSSNEEFVWGIP-----NLDELREYLYNYLGWPAHKVDDTIIP 933
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGVK LW +L+ + + L L KRV ID S W+ K + T + G
Sbjct: 1 MGVKGLWQLLQPVARPVKLEMLGGKRVAIDSSIWLYHFLRAIKDKQGHTLTNAHILGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
R+ L+ +FV DG P +K +T R N
Sbjct: 61 RILKLLFYGLKPVFVFDGGAPRLKKTTISERKN 93
>gi|301609960|ref|XP_002934532.1| PREDICTED: flap endonuclease GEN homolog 1-like [Xenopus (Silurana)
tropicalis]
Length = 256
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 20/233 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW IL KK +PL L K + +DLS W+ + Q V K K LR LF
Sbjct: 1 MGVTDLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMV-KQMIGVVHKPHLRNLFFC 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEVTQDDKNLDKMSSLRRNMGSEF 118
+ +L L L+FVS+G P IK T +R + G + + S F
Sbjct: 60 ISSLNLLGVKLVFVSEGEAPKIKAETMSKRNEMRYGPSASAAPPKAGR---------SYF 110
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
++KE + LG+P ++ EAEA CA LN DGC ++D D+FL+GA+TVYR+
Sbjct: 111 KSVLKECLLMLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTVYRNF 170
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
+ + + ++ + R+ L+L + Y R G E+ Q+
Sbjct: 171 TMNVKNFTA--------ERMDWPRHYSCEKLLVLLTYYDMNERKAGRENGAQL 215
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 129/253 (50%), Gaps = 18/253 (7%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI++ + L G+P + EAEAQCA L L DG + DS
Sbjct: 745 EKLQKAKRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDDS 804
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ YV CY +DI+ K+G ++ LI LA+LLGSDY++G++G+G
Sbjct: 805 DCFLFGGSRIYKNMF-NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDYTEGIKGIG 863
Query: 225 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
P A +I+ G +++ L F + AK++++ + E+ L I NG
Sbjct: 864 PVMAMEILAEFG------TLSNFKLWFDRHAKSAERPQQEYTP--LEKKLLTRIK-NGK- 913
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 344
L P S V DAY P+ DS + + ++ V QW + DE
Sbjct: 914 LFLPDGFPSSVVRDAYKRPEVDRDDSAFKWGTPSLDQIRSFLMYNV-----QWSQARVDE 968
Query: 345 YILPKIAERDLRR 357
++P I RD+ R
Sbjct: 969 VMVPLI--RDMNR 979
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ + + L L K++ +D S WI Q L+ V + + + G F
Sbjct: 1 MGVTSLWDIVGPAARPVKLEALSRKKLAVDASIWIYQFLKAVRDKDGNKLGQSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG P +K RR SG+
Sbjct: 61 RICKLLYFGILPLFVFDGGAPPLKRQVILKRRERRSGN 98
>gi|363752988|ref|XP_003646710.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890346|gb|AET39893.1| hypothetical protein Ecym_5112 [Eremothecium cymbalariae
DBVPG#7215]
Length = 988
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 21/239 (8%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M+ + + L G+P + EAEAQCA L L DG + DSDIFLFG VY++++
Sbjct: 727 MVTQIQELLTRFGIPYVTAPMEAEAQCAELLKLKLVDGIITDDSDIFLFGGSNVYKNMFY 786
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ +V Y D I LG R+ LI+LA LLGSDY+ GV+G+GP S +I+ D
Sbjct: 787 -EKAFVEYYSSDSISLNLGLNRDMLISLAELLGSDYTTGVKGVGPVSGMEILAEFRDLET 845
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ ++G F K KN + E +F+ N + + + ++ + G + PF V +AY
Sbjct: 846 FRNWYNDG-QFDK--KNLENES-TFRKNLRRKLMKNDV-ILGDNFP----NPF--VRNAY 894
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHAR--LHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
NP+ D + + V R LH WP EK+DE + P I E + R+
Sbjct: 895 MNPEV---DHDTTNFVWGIPDLDQLRSYLHSNLG----WPSEKSDEVLGPLIRELNKRK 946
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV---NKSYRPQTDKLFLRGL 57
MGV +LWDI+ K + L L NKR+ +D S WI Q N S++ + + G
Sbjct: 1 MGVHSLWDIVGPTTKPVRLESLSNKRMAVDASIWIYQFLKATPDNGSHKLKNAHIL--GF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ ++ +FV DG P +K T R+R
Sbjct: 59 FRRICKVLYFGMKPVFVFDGGAPPLKRETIRQR 91
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 41/265 (15%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+++ +R+ MI++ + L G+P + EAEAQCA L +L DG + DS
Sbjct: 755 EQLQKAKRDSDEVTETMIRDVQELLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDDS 814
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG VY++++ ++ YV CY M+DI ++G + LI LALLLGSDY++G++G+G
Sbjct: 815 DCFLFGGDKVYKNMF-NQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDYTEGIKGIG 873
Query: 225 PESACQIVKSVGDNVVLQRIASE-----------GLSFVKRA-KNSKKEGWSFKCNNKEE 272
P A +I+ G ++ E GL+ +KR+ N K G F
Sbjct: 874 PVMAMEILAEFGSLKKFKQWFDENTKTTVPPDKSGLTSIKRSLLNRIKNGTFF------- 926
Query: 273 SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCA 332
L P + + DAY P+ SE V + + ++ V
Sbjct: 927 --------------LPESFPDNVIFDAYKQPEVDHDKSEFKWGVPSLDQIRSFLMYNVS- 971
Query: 333 QFFQWPPEKTDEYILPKIAERDLRR 357
W + DE ++P I RD+ R
Sbjct: 972 ----WSQARVDEVMVPLI--RDMNR 990
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDIL + + L L K++ +D S WI Q L+ V + + G F
Sbjct: 1 MGVNSLWDILGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDQEGNSMPQAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ IFV DG PA+K T +R
Sbjct: 61 RICKLLYFGIYPIFVFDGGAPALKRQTINQR 91
>gi|336265442|ref|XP_003347492.1| Rad2 protein [Sordaria macrospora k-hell]
gi|380087974|emb|CCC05192.1| putative Rad2 protein [Sordaria macrospora k-hell]
Length = 1279
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 116/260 (44%), Gaps = 35/260 (13%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 878 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 937
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ G + +V CY ++DIE++L GR LI LA LLGSDY++G+ G+GP +A +
Sbjct: 938 GTRVYKNMFNGNK-FVECYLLNDIEKELSLGREQLIALAQLLGSDYTEGLPGVGPVTAVE 996
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEES---LNQEINVNGTDHSL 287
I L S + K+ W+ + LN L
Sbjct: 997 I---------LSEFPPSSESGPMSSLKDFKQWWTTLQSTPHPDASLLNTPFRRKFRKSHL 1047
Query: 288 QR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQW 337
+ P V +AY P+ S FQ L Q Q W
Sbjct: 1048 TKLFLPLNFPSPAVFEAYLRPEVDSTPDP----------FQWGVPDLEGLRQYLMQTIGW 1097
Query: 338 PPEKTDEYILPKIAERDLRR 357
PE+TDE ++P I RD+ R
Sbjct: 1098 SPERTDEVLVPVI--RDMNR 1115
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRAT 87
>gi|118386483|ref|XP_001026360.1| XPG N-terminal domain containing protein [Tetrahymena thermophila]
gi|89308127|gb|EAS06115.1| XPG N-terminal domain containing protein [Tetrahymena thermophila
SB210]
Length = 1113
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 25/236 (10%)
Query: 122 IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 181
++ + L L GVP +E EAEAQCA L L DG + DSD+FLFG + +YR ++
Sbjct: 755 FQQVRQLLLLFGVPWVEAPSEAEAQCAFLEQIKLVDGIITDDSDVFLFGGKNIYRGLFGK 814
Query: 182 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
E YV + IE+++G R+ LI +AL LGSDY+ G++G+G +A +I + + L
Sbjct: 815 EADYVRYINGESIEKEMGVNRDKLIYMALFLGSDYTLGIKGVGIVNAMEICTAFENIDAL 874
Query: 242 QRI---ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH-SLQRETPFSQVI 297
+R AS+ ++ +K + +E +E++ N H + E P +VI
Sbjct: 875 KRFKVWASKADVLLEDP------SIHYKNISLKEKNYKELHKNYKKHWEIPEEFPSQKVI 928
Query: 298 DAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 348
+AY NP +D FQ + L C F W E T+ + P
Sbjct: 929 NAYLNPNVDKSD----------EAFQWGKPSLGLLRAYCQNIFGWNDEITNYSLKP 974
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTD--KLFLRGLF 58
MGV+ LW +L + L + L+ +R+ ID+S W++++ S R ++ + L G+F
Sbjct: 1 MGVQGLWTLLSPAGRKLKVEALEGQRLAIDVSIWVIRMLYGFASRRMNSEFKNIHLVGIF 60
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLST 86
RL L++L +FV DG P +K T
Sbjct: 61 KRLCRLLSLGIKPVFVFDGKAPELKRHT 88
>gi|290992099|ref|XP_002678672.1| predicted protein [Naegleria gruberi]
gi|284092285|gb|EFC45928.1| predicted protein [Naegleria gruberi]
Length = 985
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
F ++ AK L LGVP L EA+AQC L+ +L D + DSD+FLFGA VYR+
Sbjct: 663 FFALVDLAKDLLTYLGVPYLVSPSEADAQCGFLSKHNLVDAVITEDSDLFLFGANCVYRN 722
Query: 178 IWLGER----GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
++ R + Y MD+I + LGF R +LI +ALLLGSDY+ GV +GP +A Q+V
Sbjct: 723 VFGSTRHIDKNIIEEYRMDNIFKVLGFTRTNLIQIALLLGSDYTDGVHNVGPVTATQVVD 782
Query: 234 SVGDNVVLQRIASEGLSFVKRAKNSKK---EGWSFKCNNKEESLNQ----EINVNGTDHS 286
+ N + + + L V + K E +F ++S + + N G+
Sbjct: 783 AF--NPEEKELDEDNLEEVTQGLKDFKLWVEDDTFNMGRTQKSWGKKGDFQFNYKGSKKK 840
Query: 287 --LQRETPFSQVIDAYSNPKCYSADSEAV 313
P S++IDAY+ P+ + S+ V
Sbjct: 841 FIFPEGFPDSKIIDAYTKPQVDDSLSDFV 869
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 1 MGVKNLWDILESCK-KTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGVK LWD+L + L L K V +D+S W+ Q + D+ F
Sbjct: 1 MGVKGLWDLLRPAAFQVQSLDVLSGKTVAVDISVWLHQFM-LGMGLEDHDDEFFFGRGAN 59
Query: 54 -------------LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
L+ LF R+ L+ + IF+ DG+ P +K T ++R
Sbjct: 60 NQTGQASFSQVRYLKALFKRICKLLYYDIKPIFIFDGATPLVKQKTIQKR 109
>gi|195127377|ref|XP_002008145.1| GI11983 [Drosophila mojavensis]
gi|193919754|gb|EDW18621.1| GI11983 [Drosophila mojavensis]
Length = 751
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 39/242 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW IL P+ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWSILTPYADRKPICELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR-------------------LNSGSEVTQDD 101
LI +FV +G P +K +R + V + D
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGARPKDKDKDKDAVGPTQAVAKSD 118
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K + F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S
Sbjct: 119 KG-----------RTRFNHVLKQCENLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVIS 167
Query: 162 SDSDIFLFGARTVYRDIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
DSD F +GA VYR+ + G V Y+M +I + FG+N +I +ALL G
Sbjct: 168 QDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMQEICNHMDFGQNKVIVMALLCGC 227
Query: 215 DY 216
DY
Sbjct: 228 DY 229
>gi|308810128|ref|XP_003082373.1| 5'-3' exonuclease (ISS) [Ostreococcus tauri]
gi|116060841|emb|CAL57319.1| 5'-3' exonuclease (ISS), partial [Ostreococcus tauri]
Length = 987
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 130/281 (46%), Gaps = 53/281 (18%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ + L G+P + +EAEAQCA LN + L D + DSD+FLFGA VYR+ +
Sbjct: 623 MYRDVQELLTLFGIPYIIAPQEAEAQCAYLNEQKLVDAVITDDSDVFLFGASLVYRN-FF 681
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ Y Y D I + +G RN I LALLLGSDY++GV G+G +A +IV + +V+
Sbjct: 682 QDKKYCEVYSADRIRKDIGLDRNRFIQLALLLGSDYTEGVSGIGIVNALEIVSAFRGDVI 741
Query: 241 ------LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ------ 288
+ + E L+ V N S ++ I+ +GT+ SL
Sbjct: 742 EASKAFKEWVDLEELTMVP----------DHLLPNPSPSKSKNISDDGTEQSLAEAFKEK 791
Query: 289 -----------RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCA 332
P +V+ AY NP +V R ++ F+ + L C
Sbjct: 792 HRSLKKSWDVPENFPSIEVVKAYQNP--------SVDR--SEEPFEWGKPDVDLLRLYCV 841
Query: 333 QFFQWPPEKTDEYILPKIA---ERDL-RRFANLRANTLALG 369
+ F W + TD+ + P + ERD RR + T A+G
Sbjct: 842 KNFAWTRDATDQVLEPMMKAWEERDAQRRIDSFFETTAAVG 882
>gi|45198651|ref|NP_985680.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|44984661|gb|AAS53504.1| AFR133Cp [Ashbya gossypii ATCC 10895]
gi|374108910|gb|AEY97816.1| FAFR133Cp [Ashbya gossypii FDAG1]
Length = 970
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 17/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI++ + L G+P L EAEAQCA L L DG + DSD+FLFG V+++++
Sbjct: 709 MIRDIQQLLSIFGIPYLTAPMEAEAQCAELLRLKLIDGIITDDSDVFLFGGSKVFKNMF- 767
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y + I +LG R I LA L+GSDY+ G++G+GP S +I+ +
Sbjct: 768 QEKNYVEYYNTETISAELGLDRLKFIALAQLMGSDYTNGIKGIGPVSGIEILANYNTLEE 827
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ +EG + + S + S N + L + V G D P + V DAY
Sbjct: 828 FRTWYNEG-----QFRKSLLDKESLFQKNLRKKLTKSGVVLGDDF------PSAAVSDAY 876
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
NP+ D + V L + L WP EK DE ++P I E + RR
Sbjct: 877 LNPEV---DHDTTKFVWG--LPELDSLRTFLGSTLGWPTEKADEVLIPLIRELNKRR 928
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LWDIL + + L L N R+ +D S WI Q + K + G F
Sbjct: 1 MGVHALWDILGPTARPVKLESLSNNRMAVDASIWIYQFLKAARDKNGNRLKGAHIIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIKPVFVFDGGVPPLKRETIRQR 91
>gi|384493818|gb|EIE84309.1| hypothetical protein RO3G_09019 [Rhizopus delemar RA 99-880]
Length = 816
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 14/163 (8%)
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC---MIKEAKALG 129
FVSD I + KL +R E+ QD K L+ + R++ G+ MI + + L
Sbjct: 616 FVSD--IASRKLEDVKR------ELYQDMKELN--AQQRKDKGNSDDITDQMIGDIQELL 665
Query: 130 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 189
G+P + EAEAQCA L L +G + DSD+FLFGA VY++++ +R +V CY
Sbjct: 666 KLFGIPYIVSPMEAEAQCAALERLKLIEGTITDDSDVFLFGASRVYKNMFNQQR-FVECY 724
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+DIER++ RN LI LA LLGSDY++G+ G+GP +A +I+
Sbjct: 725 RTEDIEREMMLSRNKLIQLAYLLGSDYTEGIPGVGPVAAMEIL 767
>gi|340500548|gb|EGR27416.1| hypothetical protein IMG5_195980 [Ichthyophthirius multifiliis]
Length = 989
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%)
Query: 123 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 182
++ K L + G+P +E EAEAQCA L + L DG + DSD+FLFG R VYR+++
Sbjct: 665 QQIKQLLILFGIPWVESPSEAEAQCAFLEMHQLVDGIVTDDSDVFLFGGRKVYRNLFSQN 724
Query: 183 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQ 242
YV +++IE+ LG R LI +AL LGSDY+ G++G+G ++ +IV + + L+
Sbjct: 725 SQYVRYINIENIEKDLGLDRQRLILMALFLGSDYTLGIKGVGIVNSFEIVTAFDNMDALK 784
Query: 243 R 243
R
Sbjct: 785 R 785
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-----LQNVNKSYRPQTDKLFLR 55
MGV LW IL + L + L +++ ID+S W+++ LQ+ N++++ + L
Sbjct: 1 MGVFGLWTILSPAGRKLNIEALTGQKLAIDVSIWVLRLIYGSLQSKNENFKN----IHLI 56
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+F RL L++L +FV DG P +K +T +R
Sbjct: 57 CIFKRLCKLLSLGIKPVFVFDGQPPELKKNTLYQR 91
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 702 EKLQKAKRDSDEVTETMINDVQELLRRFGIPYITAPMEAEAQCAELLKIGLVDGIITDDS 761
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D LFG VY++++ ++ YV CY DDIE K+G R+ LI LALLLGSDY++G++G+G
Sbjct: 762 DCLLFGGDHVYKNMF-NQKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDYTEGIKGIG 820
Query: 225 PESACQIV 232
P A +I+
Sbjct: 821 PVLAMEIL 828
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ + + L L K++ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSLWDIVGPTARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNSLPSSHIIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
R+ L+ IFV DG +P +K T R N
Sbjct: 61 RICKLLYFGILPIFVFDGGVPVLKRETINARKN 93
>gi|385304582|gb|EIF48594.1| single-stranded dna cleaves single-stranded dna during nucleotide
excision repair [Dekkera bruxellensis AWRI1499]
Length = 577
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 90 RLNSGSEVTQDDK--NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 147
+ N+GS+ T D++ +K+ +R+ + MI + + L G+P + EAEAQC
Sbjct: 333 KQNNGSKWTMDEEIKLQEKLKKQKRDSDEVSTSMILDVQDLLSRFGIPFITAPMEAEAQC 392
Query: 148 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLIT 207
A L L DG + DSD FLFG +Y++++ E+ +V CY+++DI R +G R +I
Sbjct: 393 AELFGLKLVDGIVTDDSDCFLFGGSIIYKNMF-NEKNFVECYQLEDIARDMGLTRKQMID 451
Query: 208 LALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR--IASEGLSFVKRAKNSKKEGWSF 265
LAL+LGSDY+ G++G+G +A +I+ GD V + + +G G
Sbjct: 452 LALMLGSDYTSGLKGVGKVTAVEILSEFGDLVTFRNWWLEYQG-------------GKID 498
Query: 266 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKC 305
K N+ + + D L R+ P VIBAY +P+
Sbjct: 499 KSNDNKXRRKIRKQMXKADLFLGRDFPDPAVIBAYLHPEV 538
>gi|320580410|gb|EFW94633.1| Single-stranded DNA endonuclease [Ogataea parapolymorpha DL-1]
Length = 1011
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 116/249 (46%), Gaps = 27/249 (10%)
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
M +R+ MI + + + G+P + EAEAQCA L L DG + DSD
Sbjct: 715 MKKQKRDADEVTVRMILDIQDMLSRFGLPYITAPMEAEAQCAELLRLGLVDGIITDDSDC 774
Query: 167 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
FLFG VY++++ E+ +V CY+M+D+ER LG R LI LALLLGSDY++G++G+G
Sbjct: 775 FLFGGDRVYKNMF-NEKNFVECYQMEDLERDLGLDRRMLIDLALLLGSDYTEGIKGVGKV 833
Query: 227 SACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
+A +I+ G L+ L + + KE + K TD
Sbjct: 834 AAMEILAEFG---TLESFKHWWLDYQNGIIDESKETTVKRKLRKSLKK--------TDLY 882
Query: 287 LQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEK 341
L E P +VI+AY +P+ SE FQ +L W EK
Sbjct: 883 LTPEFPDKRVIEAYLHPEVDHDKSE----------FQWGYPNLDKLRTFLMYNVGWGKEK 932
Query: 342 TDEYILPKI 350
D +LP I
Sbjct: 933 VDTILLPII 941
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW+I+ + + L + KR+ +D S WI Q L+ V Q + G F
Sbjct: 1 MGVHGLWEIVGPTARPVRLEAMAKKRLAVDASIWIYQFLKAVRDVQGNQLINSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVT 98
R+ L+ +FV DG P +K T RR GS+ T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPLLKKQTISKRREKREGSKET 101
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 118/261 (45%), Gaps = 41/261 (15%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 870 RRDADEVTQVMISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 929
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + YV CY +IE +L R LI+LALLLGSDY++G+ G+GP +A +
Sbjct: 930 GTRVYKNVFNSNK-YVECYLASEIESELSLSREQLISLALLLGSDYTEGLPGVGPVTALE 988
Query: 231 IVKSV--GDNVVLQRIASEGLSFVKRAKNSKKEG---WSFKCNNKEESLNQEINVNGTDH 285
I+ GD L + A +R + + + W K + T
Sbjct: 989 ILSHFPPGDKQALIQFAEWWTDVQQRGRPASADASSPWRTKFR----------RAHATKL 1038
Query: 286 SLQRETPFSQVIDAYSNPKCYSA---------DSEAVHRVLAQHLFQHARLHQVCAQFFQ 336
L P V DAY +P+ S+ D E + R L +
Sbjct: 1039 FLPPGWPSPAVWDAYLSPEVDSSPEPFQWGVPDVEGLRRFLMGTV--------------G 1084
Query: 337 WPPEKTDEYILPKIAERDLRR 357
W EKTDE +LP + RD+ R
Sbjct: 1085 WGKEKTDEVLLPVV--RDMNR 1103
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV++LW IL + L L KR+ ID S WI Q L+ V L G F
Sbjct: 1 MGVQSLWTILSPSARPTDLATLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHLVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWYGVKPVFVFDGGAPALKRAT 87
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++M +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 788 EQMLKAKRDSDEPTQNMISDVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDS 847
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG VY++++ ++ YV CY DIE LG +++LI LALLLGSDY++GV+G+G
Sbjct: 848 DCFLFGGDKVYKNMF-NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIG 906
Query: 225 PESACQIVKSVG 236
P A +I+ G
Sbjct: 907 PVLAVEILAEFG 918
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV +LWDI+ K + L L K++ +D S WI Q +++ + PQ+ + G
Sbjct: 1 MGVNSLWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDAEGNALPQS---HIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG P +K T R
Sbjct: 58 FFRRICKLLYYGIMPVFVFDGGAPILKKQTIADR 91
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++M +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 784 EQMLKAKRDSDEPTQNMISDVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDS 843
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG VY++++ ++ YV CY DIE LG +++LI LALLLGSDY++GV+G+G
Sbjct: 844 DCFLFGGDKVYKNMF-NQKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIG 902
Query: 225 PESACQIVKSVG 236
P A +I+ G
Sbjct: 903 PVLAVEILAEFG 914
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ K + L L K++ +D S WI Q L+ V + + G F
Sbjct: 1 MGVNSLWDIVGPTAKPVKLEALSRKKLAVDASIWIYQFLKAVRDGEGNALPQSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYYGIMPVFVFDGGAPVLKKQTIADR 91
>gi|388858154|emb|CCF48222.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Ustilago hordei]
Length = 1592
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 23/258 (8%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1034 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1086
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G +Y++++ + V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A
Sbjct: 1087 GGTRIYKNMFNNNK-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTEGLVGVGPVVAM 1145
Query: 230 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
+++ G++ +L+ + V+ +++++ +++L +++ L+
Sbjct: 1146 ELLALFPGEDGLLK--FRDWWMRVQMGQDTEEHTRGKTMRRIKKNLRNKVH-------LE 1196
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P V+DAY NP +D A L L ++ WP KTD+Y+LP
Sbjct: 1197 PSWPEPAVLDAYYNPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLP 1251
Query: 349 KIAERDLRRFANLRANTL 366
I +++R A TL
Sbjct: 1252 IIERQNVRNRARGNQATL 1269
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV+ LW +L+ + + + L+ KR+ ID S W+ Q + +T + G
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDREGRTLSNAHILGFLW 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMKRKTLSGR 91
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 118/260 (45%), Gaps = 25/260 (9%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL GVP + EAEAQCA L +L DG + DSD FLFG
Sbjct: 895 RRDADEVTQVMVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFG 954
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY + D+E +L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 955 GTRVYKNMFNSNK-FVECYLLRDLEDELELSREQLIALAQLLGSDYTEGIPGIGPVTAVE 1013
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQR 289
I+ EGLS K + G K + ++ T L
Sbjct: 1014 ILSEF--------PGREGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLPL 1065
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDE 344
P V DAY +P+ S +Q FQ L Q W E+TDE
Sbjct: 1066 GFPSPAVFDAYLHPEVDS----------SQEQFQWGVPDLEGLRQFLMSTIGWSKERTDE 1115
Query: 345 YILPKIAERDLRRFANLRAN 364
++P I + + R +AN
Sbjct: 1116 VLVPVIRDVNRREAEGTQAN 1135
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
RL L+ +FV DG PA+K +T
Sbjct: 61 RLCKLLWYGVKPVFVFDGGAPALKRAT 87
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 716 EKLHKAKRDSDEVTENMIGDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIITDDS 775
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ +V CY +DIE K+G R +LI LA+LLGSDY++G++G+G
Sbjct: 776 DCFLFGGDRIYKNMF-SQKQFVECYLKNDIEDKIGLSRENLIELAILLGSDYTEGIKGIG 834
Query: 225 PESACQIVKSVG 236
P A +I+ G
Sbjct: 835 PVLAVEILAEFG 846
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV++LWDI+ + + L L K++ +D S WI Q +++ + PQ+ + G
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALPQS---HIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
F R+ L+ IFV DG +P +K T R N
Sbjct: 58 FFRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKN 93
>gi|297600506|ref|NP_001049313.2| Os03g0205400 [Oryza sativa Japonica Group]
gi|255674294|dbj|BAF11227.2| Os03g0205400 [Oryza sativa Japonica Group]
Length = 1470
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ +R YV Y M DIE +LG R LI +A+LLGSDY++G+ G+G +A ++ + +
Sbjct: 914 F-DDRKYVETYLMKDIESELGLTREQLIRMAMLLGSDYTEGISGIGIVNAIEVAHAFPEE 972
Query: 239 VVLQRI 244
LQ+
Sbjct: 973 DGLQKF 978
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW++L + + + L KR+ +D S W+VQ + + + L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRT 87
>gi|356577903|ref|XP_003557061.1| PREDICTED: uncharacterized protein LOC100796403, partial [Glycine
max]
Length = 215
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 91/131 (69%), Gaps = 12/131 (9%)
Query: 377 VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL- 435
+PVKCP++ IIKSR++QG+EC+EVSWE GL++S+VPADLIESAC EKI+EFEER+A
Sbjct: 3 IPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQR 62
Query: 436 -------RQPKKSKPKSSAAEIDQKLQALMLDIESENSTSSNASFSS-RVVMSEDWTAAT 487
R+PKK + SS AE+D KLQ L+LDI + + NAS SS R+ TA
Sbjct: 63 KKQNIQKRKPKKKETNSSVAELDLKLQNLLLDINLRDEANFNASDSSGRISRITTDTAEA 122
Query: 488 EIDLTRRQDLL 498
+++ T DLL
Sbjct: 123 DLNTT---DLL 130
>gi|190346361|gb|EDK38425.2| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI++ + L G+P + EAEAQCA L L DG + DSD FLFG + VY++++
Sbjct: 774 TMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNMF 833
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ YV CY +D+I K+G + +LI LALLLGSDY++G++G+GP A +I+
Sbjct: 834 -NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEIL 885
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ + + L L K++ +D S WI Q L+ V S + + G F
Sbjct: 1 MGVNSLWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T +R
Sbjct: 61 RICKLLYFGILPVFVFDGGAPALKRQTILKR 91
>gi|146417652|ref|XP_001484794.1| hypothetical protein PGUG_02523 [Meyerozyma guilliermondii ATCC
6260]
Length = 1035
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI++ + L G+P + EAEAQCA L L DG + DSD FLFG + VY++++
Sbjct: 774 TMIRDVQELLKRFGIPYITAPMEAEAQCAELMKLGLVDGIITDDSDCFLFGGQKVYKNMF 833
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ YV CY +D+I K+G + +LI LALLLGSDY++G++G+GP A +I+
Sbjct: 834 -NQKQYVECYFIDEISHKVGLDQKNLIELALLLGSDYTEGIKGIGPVMAVEIL 885
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDI+ + + L L K++ +D S WI Q L+ V S + + G F
Sbjct: 1 MGVNSLWDIVGPTARPVRLESLSRKKLAVDASIWIYQFLKAVRDSDGNSLPQSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T +R
Sbjct: 61 RICKLLYFGILPVFVFDGGAPALKRQTILKR 91
>gi|443897481|dbj|GAC74821.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 1544
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 124/261 (47%), Gaps = 23/261 (8%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1052 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1104
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G +Y++++ R V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A
Sbjct: 1105 GGTRIYKNMFNNNR-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTEGLAGVGPVVAM 1163
Query: 230 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
+++ G++ +L+ E V+ ++ + +++L +++ L+
Sbjct: 1164 ELLALFPGEDGLLK--FREWWMRVQTGADTHEHTRGKTMRRIKKNLRNKVH-------LE 1214
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P V+DAY P +D A L L ++ WP KTD+Y+LP
Sbjct: 1215 PSWPEPAVLDAYYAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVSKTDQYLLP 1269
Query: 349 KIAERDLRRFANLRANTLALG 369
I ++ R A TL G
Sbjct: 1270 IIERQNARTRARGNQTTLDRG 1290
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV+ LW +L+ + + + L+ KR+ ID S W+ Q + +T + G
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFLW 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMKRKTLSGR 91
>gi|443725425|gb|ELU13028.1| hypothetical protein CAPTEDRAFT_123501, partial [Capitella teleta]
Length = 206
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 9/204 (4%)
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGS-EVTQDDKNLDKMSSL 110
+F R LF R+ L L L+F +G P +K ++RL + + E Q + S+
Sbjct: 1 VFFRNLFFRISHLTRLGVKLVFAVEGDPPPLKWEMIQKRLQARTGEGPQGSYSSSFQSNS 60
Query: 111 RRNM-GSEFSCMIKEAKALGLS-----LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+R M +C+I + + LGVP ++ EAEA CA LN E + D ++D
Sbjct: 61 QRGMIALTINCLIIAVQFIQCCELLDLLGVPHVQSSGEAEAMCAQLNKEKVVDAVITNDG 120
Query: 165 DIFLFGARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRG 222
D FL+GAR VYR+ + + +V Y MD+IE KL R +L+ LALLLG DY+ QGV G
Sbjct: 121 DAFLYGARKVYRNFTMNTKDPHVESYCMDEIEDKLSLDRKTLVALALLLGCDYAPQGVAG 180
Query: 223 LGPESACQIVKSVGDNVVLQRIAS 246
+G E+ +++ + +L + S
Sbjct: 181 VGKETVLKLIAELNGTSLLDKSVS 204
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 16/240 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA V+++++
Sbjct: 796 MISQIMTMLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFKNMF- 854
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ + D+ER+LG R++LI LA LLGSDY++G+ G+GP A ++V+
Sbjct: 855 NQSKTVECFLLSDLERELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVREFPGKDG 914
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + E + V+ K+ + F+ K+ D + ++ P + V DAY
Sbjct: 915 LWKF-KEWWTKVQTGKDGDESNTKFRKMFKKRF---------KDLYIAQDWPNTAVRDAY 964
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
+P S+D L L WP K DE +LP I + + R N
Sbjct: 965 YHPTVDSSDEP-----FKWGLPDLDGLRAFFNSELGWPQSKVDELLLPIIQKMNKRSQTN 1019
>gi|77736641|ref|NP_001029995.1| XPG-complementing protein [Gallus gallus]
gi|71725078|dbj|BAE16755.1| XPG [Gallus gallus]
Length = 1118
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 26/242 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SRNKYVEYYQYIDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL +K A E W+ E N++I N D ++++ Q+
Sbjct: 832 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKIRPNPRDTKVKKKLRELQLSSG 880
Query: 300 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 355
+ NP A V ++ + Q+ C F W KTDE +LP I + +L
Sbjct: 881 FPNPAVAEAYLKPVVDETRGSFIWGKPDVEQIREFCKDHFGWTRTKTDEILLPVIKQLNL 940
Query: 356 RR 357
++
Sbjct: 941 QQ 942
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ V + L LF+
Sbjct: 1 MGVQGLWKLLECTGRPVNPETLEGKILAVDISIWLNQAVKGVRDRHGNTIQNAHLLTLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKR 91
>gi|367016309|ref|XP_003682653.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
gi|359750316|emb|CCE93442.1| hypothetical protein TDEL_0G00750 [Torulaspora delbrueckii]
Length = 1012
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 17/237 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI E + L G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 752 MIVEVQDLLSRFGIPFITAPMEAEAQCAELLGLKLVDGIITDDSDVFLFGGSRVYKNMF- 810
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ I++ LG R+++I LA LLGSDY+ G++G+GP S+ +++ G+ +
Sbjct: 811 HEKNYVEFYDYQSIKQNLGLDRDTMIELAQLLGSDYTNGIKGMGPVSSMEVLAEFGNLIK 870
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ +EG K+ + N E L + + N L + P V D+Y
Sbjct: 871 FRDWYNEGQFDTKKQQAE---------NKYERDLRKRLVKNEV--VLSSDFPSELVRDSY 919
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+P+ S + + L Q W EK+DE ++P I + + R+
Sbjct: 920 LSPEVDHDKSTFIWGAPDLDM-----LRQFMRARVGWTQEKSDEILVPLIRDINNRK 971
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----LRG 56
MGV + WDI+ K + L LQ++R+ +D S WI Q K+ R Q + G
Sbjct: 1 MGVHSFWDIVGPTAKPVRLESLQDRRMAVDASIWIYQFL---KAVRDQEGNALKNSHIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F R+ L+ +FV DG +PA+K ST ++R
Sbjct: 58 FFRRICKLLYFGIKPVFVFDGGVPALKRSTIQQR 91
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 1/132 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 851 EKLQKAKRDSDEVTETMIYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLVDGIVTDDS 910
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG VY++++ ++ +V CY DDI K+G +++LI LALLLGSDY++G++G+G
Sbjct: 911 DCFLFGGDKVYKNMF-NQKQFVECYFKDDIATKIGLSQDNLIELALLLGSDYTEGIKGVG 969
Query: 225 PESACQIVKSVG 236
P A +I+ G
Sbjct: 970 PVLAMEILAEFG 981
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV++LWDI+ + + L L K++ +D S WI Q L+ V + G F
Sbjct: 1 MGVQSLWDIVGPSARPVRLEALSRKKLAVDASIWIYQFLKAVRDKEGNALQSSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
R+ L+ IFV DG +P +K T R N
Sbjct: 61 RICKLLFFGIRPIFVFDGGVPVLKKQTIAERKN 93
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ S M + K L LG+P +E EAEAQCA L+ + D + DSD FLFGA
Sbjct: 758 RHADSVTEQMFADTKRLLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGA 817
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
VYR I+ + YV YEM+ IER +G R+ LI L LLLGSDYS GV G+G +A +I
Sbjct: 818 SRVYRHIFEDSK-YVEEYEMNRIERNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEI 876
Query: 232 VKS 234
V++
Sbjct: 877 VEA 879
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTD--KLFLRGLF 58
MGV+ LW++L + + + L +RV +D S W+ Q + T L G+F
Sbjct: 1 MGVRGLWELLAPAGQRVGIETLSGRRVAVDASIWLNQFVRAVRDTEAMTTVRNAHLLGIF 60
Query: 59 HRLRALIALNCGLIFVSDGSIPAIK 83
R L+ +FV DG +P++K
Sbjct: 61 RRCCKLLYYGIEAVFVFDGGVPSLK 85
>gi|145352686|ref|XP_001420669.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580904|gb|ABO98962.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 271
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 122/261 (46%), Gaps = 42/261 (16%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ + L G+P + +EAEAQCA LN L D + DSD+FLFGA VYR+
Sbjct: 1 MYRDVQELLTLFGIPYIIAPQEAEAQCAYLNQHKLVDAVITDDSDVFLFGASHVYRNF-F 59
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ Y Y D I+R+LG R+ I LALLLGSDY++GV G+G +A +IV NV+
Sbjct: 60 SEKKYCEVYTADRIKRELGLDRDRFIQLALLLGSDYTEGVGGVGIVNALEIVSVFKGNVM 119
Query: 241 ------LQRIASEGLSFVKR----------AKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
+ I E L+ V A+++ + + K SL + V
Sbjct: 120 DASKAFREWIDMEELTMVPERLLPSPSKTSAESATDDAITAAFKEKHRSLKKSWEVPANY 179
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPP 339
SL +V+ AY P S D ++ F+ + L C + W
Sbjct: 180 PSL-------EVVKAYQYP---SVDQ-------SEETFEWGKPDLDMLRLFCIKTLSWTR 222
Query: 340 EKTDEYILPKI---AERDLRR 357
+ D+ +LP + ++RD +R
Sbjct: 223 DAADQILLPMMKSWSKRDDQR 243
>gi|255070381|ref|XP_002507272.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
gi|226522547|gb|ACO68530.1| dna-repair protein UVH3 [Micromonas sp. RCC299]
Length = 1108
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 123/265 (46%), Gaps = 41/265 (15%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M + + L GVP + +EAEAQCA +N E L D + DSD FLFGA TVYR+++
Sbjct: 800 MYHQIQDLLTLFGVPYVIAPQEAEAQCAWMNSEGLVDAVITEDSDAFLFGASTVYRNVF- 858
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI--VKSVGDN 238
+ YV Y +++I+R +G R + LALLLGSDY++G+ G+G +A +I V S D
Sbjct: 859 NTKKYVEVYSVENIQRDIGLKRAQMAELALLLGSDYTEGIPGVGIVNALEIASVFSGMDG 918
Query: 239 VVLQRIASE----------------GLSFVKR---AKNSK--------------KEGWSF 265
+ R E G S K+ AK+ + KEG
Sbjct: 919 LTTFRNWVENGDLPDQVNRGNRCLAGSSLPKKHVVAKDGEGGHLVSDKEKNIDLKEGEVA 978
Query: 266 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA 325
+ E Q+ T L + P VI+AY+ P DS VH + F+
Sbjct: 979 NIYLQREIFKQKHQAARTRWILPNDFPSVAVIEAYAKPL---VDSSKVHLEWGKPNFELL 1035
Query: 326 RLHQVCAQFFQWPPEKTDEYILPKI 350
R+ C + F W KTDE + P I
Sbjct: 1036 RV--FCLESFNWGIGKTDELLEPVI 1058
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGVK LW++LE + + + L +RV +D S W+VQ K+ R + +
Sbjct: 1 MGVKGLWNLLEPTGRRVDITALAGQRVAVDASIWLVQFI---KAMRDERGDMIHNAHLLG 57
Query: 54 -LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
L F R+ ++ +FV DG+ P +K T R
Sbjct: 58 SLFSFFRRICRMLYHGISPVFVFDGATPTLKRHTVASR 95
>gi|380474820|emb|CCF45572.1| DNA-repair protein rad13 [Colletotrichum higginsianum]
Length = 622
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 27/261 (10%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L SL DG + DSD FLFG
Sbjct: 274 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVRMSLVDGIVTDDSDCFLFG 333
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++L R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 334 GTRIYKNMFNSNK-FVECYLGSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVE 392
Query: 231 IVKSVGDNVVLQRIAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
I+ L+R + + R K + G F+ ++ + G
Sbjct: 393 ILSEFTGKDGLERFKEWWQDVQMNNRPKEADA-GSPFRRKFRKSQATKLFLPTG------ 445
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTD 343
P V DAY P+ DS H FQ L Q W E+TD
Sbjct: 446 --FPNPAVTDAYLRPEV---DSSPEH-------FQWGVPDLEGLRQFLMATIGWSKERTD 493
Query: 344 EYILPKIAERDLRRFANLRAN 364
E ++P I + + R +AN
Sbjct: 494 EVLVPVIRDMNKRDIEGTQAN 514
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 785 MISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF- 843
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V + + D+ER+LG R++L+ LA LLGSDY+ G+ G+GP A +++K +
Sbjct: 844 NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEG 903
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN----QEINVNGTDHSLQRETPFSQV 296
L R A + +R + K +KEE N ++ D L + P V
Sbjct: 904 LHRFA----DWWRRVQEGK---------DKEEESNTKTRRQFKKKFKDLYLPSDWPNPAV 950
Query: 297 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
DAY +P S++ L L Q W K DE +LP I + + R
Sbjct: 951 RDAYYHPAVDSSEEP-----FKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 1005
Query: 357 R 357
R
Sbjct: 1006 R 1006
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG P IK +T R++ SG+
Sbjct: 60 RRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGA 98
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 28/252 (11%)
Query: 18 PLHHLQNKRVCIDLSCWIVQLQNVNKSY-RPQTD-KLFLRGLFHRLRALIALNCGLIFVS 75
PL L NK V IDLS W+ + NV + P+ + ++ LF R L+ +FV
Sbjct: 5 PLFELSNKVVAIDLSGWVCESLNVVDYFVHPRFYLRYVVKNLFFRTCYLLQTGITPVFVL 64
Query: 76 DGSIPAIKLSTYRRRLN----------------SGSEVTQDDKNLDKMSSLRRNMGSEFS 119
+G+ P +K +R +G+ T +K K + +RN F
Sbjct: 65 EGAAPPLKYGVIVKRNQLQFRGARPKKVANCDKAGATATAVEKASSKPTEQKRN---RFH 121
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++K+ + L ++G+ C++ EAEA CA LN ++L DG S DSD F +GA V+R+
Sbjct: 122 HVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDALIDGVISQDSDCFAYGAVRVFRNFC 181
Query: 180 LGERGYVVCYEMDDIERK----LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ G V ++ D+ER L G+ ++ +ALL G DY GV G+G E +++
Sbjct: 182 ASQNGGSV--DVYDLERANSAGLRLGQEKIVAMALLSGCDYCPAGVAGVGREMVTRLLNC 239
Query: 235 VGDNVVLQRIAS 246
+ +LQRI S
Sbjct: 240 YDNETILQRIRS 251
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 9/254 (3%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 870 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 929
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ G + +V CY DIER L R+ LI LA LLGSDY++G+ G+GP +A +
Sbjct: 930 GTRVYKNMFNGNK-FVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVE 988
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + + + ++S + S + T L
Sbjct: 989 ILSEFPPEPTPISSLTTFKEWWTKIQSSPQPDPSLLSTPFRRKFRK---AQATKLFLPVG 1045
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P V DAY +P+ ++ + L Q Q W E+TDE ++P I
Sbjct: 1046 FPNPAVFDAYLHPEV-----DSTPEPFQWGVPDLEGLRQFLMQTIGWSQERTDEVLVPVI 1100
Query: 351 AERDLRRFANLRAN 364
+ + R ++N
Sbjct: 1101 RDMNKREREGTQSN 1114
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRAT 87
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 753 MISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYKNMF- 811
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V + + D+ER+LG R++L+ LA LLGSDY+ G+ G+GP A +++K +
Sbjct: 812 NQSKTVELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKEFPNKEG 871
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN----QEINVNGTDHSLQRETPFSQV 296
L R A + +R + K +KEE N ++ D L + P V
Sbjct: 872 LHRFA----DWWRRVQEGK---------DKEEESNTKTRRQFKKKFKDLYLPSDWPNPAV 918
Query: 297 IDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
DAY +P S++ L L Q W K DE +LP I + + R
Sbjct: 919 RDAYYHPAVDSSEEP-----FKWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRR 973
Query: 357 R 357
R
Sbjct: 974 R 974
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWTLLTPVGRPILLETVEGKTMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG P IK +T R++ SG+
Sbjct: 60 RRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGA 98
>gi|343424970|emb|CBQ68507.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Sporisorium reilianum SRZ2]
Length = 1495
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 23/258 (8%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M E M++ G+P + EAEAQCA L L DG + DSD+FLF
Sbjct: 1003 ITKQMAQEIQMMLR-------LFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLF 1055
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G+ +Y++++ + V C+ + D++R+LG R L+ LA LGSDY+ G+ G+GP A
Sbjct: 1056 GSTRIYKNMFNNNK-IVECFLLSDMQRELGLDREKLVRLAYYLGSDYTDGLAGVGPVVAM 1114
Query: 230 QIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
+++ G++ +L+ E V+ +++++ +++L +++ L+
Sbjct: 1115 ELLALFPGEDGLLK--FREWWLRVQMGQDTEEHTRGKTMRRIKKNLRNKVH-------LE 1165
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P V+DAY P +D A L L ++ WP KTD+Y+LP
Sbjct: 1166 PSWPEPAVLDAYYAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLP 1220
Query: 349 KIAERDLRRFANLRANTL 366
I ++ R A TL
Sbjct: 1221 IIERQNARNRARGNQTTL 1238
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 25/178 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV+ LW +L+ + + + L+ KR+ ID S W+ Q + +T + G
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKEGRTLSNAHILGFLW 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
R+ L+ +FV DG P +K R+ SG + R G++ S
Sbjct: 61 RILKLLFHGVRPVFVFDGGAPVMK-----RKTLSGRKA--------------RRQGAKES 101
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
K L + ++ V + +AQ + S G S+ D G TVY D
Sbjct: 102 HARTAEKLLAAQMRQAAIKHVADGQAQPS-----SSTAGQASTSEDAGSLGENTVYFD 154
>gi|170036109|ref|XP_001845908.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
gi|167878599|gb|EDS41982.1| DNA-repair protein complementing XP-G cells [Culex quinquefasciatus]
Length = 1217
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAEAQCA LN L DG + DSDI+LFG +TVY++ + ++ V+ + +
Sbjct: 847 FGVPFIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGKTVYKN-FFNQQKLVMEFTI 905
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+ IER R LI LALL+GSDY+ G+ G+G +A +++ S +E +S
Sbjct: 906 EGIERAFQMDRKKLIQLALLVGSDYTTGISGIGAVTALEVLASFPPTPQKDGETTEMMSL 965
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ--RETPFSQVIDAYSNPKCYSAD 309
+ + ++ W+ NN S+ I + +++ P S +++AY P
Sbjct: 966 LSGLRKF-RDWWNHGRNN---SVRTRITLKSKLKNIEFTEGFPSSAIVEAYLYPTV---- 1017
Query: 310 SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ + L Q F WP KTD+ +LP + D R+
Sbjct: 1018 -DGNKDAFSWGYPDAESLRDFAKQKFGWPQAKTDDILLPVLKRLDERK 1064
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL----QNVNKSYRPQTDKLFLRG 56
MGV LW ++E K +PL L+NK + +D+S W+ Q+ Q+ S P L G
Sbjct: 1 MGVTGLWKLVEQSGKPVPLETLENKVLAVDISIWLHQVTKGFQDSKGSALPNAHVL---G 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM--------S 108
LFHRL L+ +FV DG +PA+K T +R S S+ + L ++
Sbjct: 58 LFHRLCKLMYYRIRPVFVFDGGVPALKRQTIAKRNQSKSKFHNEADRLQQLLLETLAKEK 117
Query: 109 SLRRNMGSEFSCMIKEAKALGLS 131
+++ +GS S ++ +K G S
Sbjct: 118 VVQQALGSATSLLVSPSKKPGNS 140
>gi|336463192|gb|EGO51432.1| hypothetical protein NEUTE1DRAFT_70166 [Neurospora tetrasperma FGSC
2508]
gi|350297610|gb|EGZ78587.1| PIN domain-like protein [Neurospora tetrasperma FGSC 2509]
Length = 1269
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 11/247 (4%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 873 RRDADEVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 932
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ G + +V CY DIER L R+ LI LA LLGSDY++G+ G+GP +A +
Sbjct: 933 GTRVYKNMFNGNK-FVECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVE 991
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + + + ++S + + + T L
Sbjct: 992 ILSEFPPEPTPISSLTTFKEWWTKIQSSPQPDPALLSTPFRRKFRK---AQATKLFLPVG 1048
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P V DAY +P+ ++ + L Q Q W E+TDE ++P I
Sbjct: 1049 FPNPAVFDAYLHPEV-----DSTPEPFQWGVPDLEGLRQYLMQTIGWSQERTDEVLVPVI 1103
Query: 351 AERDLRR 357
RDL +
Sbjct: 1104 --RDLNK 1108
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVLQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWYGIKPVFVFDGGAPALKRAT 87
>gi|344284659|ref|XP_003414082.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Loxodonta africana]
Length = 1636
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1221 MFLESQELLRLFGVPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1279
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1280 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1330
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q++ +
Sbjct: 1331 LNEFPGHGLEPLLKF----SEWW------HEAQDNKKIRPNPYDTKVKKKLRKLQLMPGF 1380
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQH---ARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ ++ + C ++F W KTDE + P + + +++
Sbjct: 1381 PNPAVAEAYLKPVVDDSRGSFLWGKPDLGKIREFCQRYFGWNRTKTDESLFPVLKQLNVQ 1440
Query: 357 R 357
+
Sbjct: 1441 Q 1441
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + L LFH
Sbjct: 434 MGVQGLWKLLECSGRQISPESLEGKILAVDISIWLNQALKGVRDHLGGSIENAHLLILFH 493
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 494 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 524
>gi|440901361|gb|ELR52322.1| DNA repair protein complementing XP-G cells [Bos grunniens mutus]
Length = 1202
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 785 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 843
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 844 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 894
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 895 LNEFPGHGLEPLRKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 944
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 945 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 996
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN 103
RL L+ IFV DG P +K T +R + D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKT 104
>gi|326913904|ref|XP_003203272.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Meleagris gallopavo]
Length = 1121
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 26/242 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SQNKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL +K A E W+ E N++I N D ++++ Q+
Sbjct: 832 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKIRPNPRDTRVKKKLRELQLSSG 880
Query: 300 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 355
+ NP A V + + Q+ C F W KTD+ +LP I + +L
Sbjct: 881 FPNPAVAEAYLKPVVDETRGSFTWGKPDVEQIREFCKDHFGWTRTKTDDILLPVIKQLNL 940
Query: 356 RR 357
++
Sbjct: 941 QQ 942
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ V + L LF+
Sbjct: 1 MGVQGLWKLLECTGRPINPEILEGKILAVDISIWLNQAIKGVRDRHGNTIQNAHLLTLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKR 91
>gi|71019629|ref|XP_760045.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
gi|46099838|gb|EAK85071.1| hypothetical protein UM03898.1 [Ustilago maydis 521]
Length = 1532
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 14/246 (5%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E + + G+P + EAEAQCA L L DG + DSD+FLFG VY++++
Sbjct: 1034 MAQEIQMMLRLFGLPYITAPMEAEAQCAELVSRRLVDGIITDDSDVFLFGGTRVYKNMFN 1093
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ + D++R+LG R L+ LA LGSDY++G+ G+GP A +++
Sbjct: 1094 NNK-IVECFLLSDMQRELGLDREKLVQLAYYLGSDYTEGLVGVGPVVAMELLALFPGQDG 1152
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + + V+ +++++ + +L+ +++ L+ P V+DAY
Sbjct: 1153 LLKFRDWWMR-VQMGQDTEEHTRGKTMRRIKRNLHNKVH-------LEPSWPEHAVLDAY 1204
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
P +D A L L ++ WP KTD+Y+LP I ++ R A
Sbjct: 1205 FAPTVDESDEP-----FAWGLPDLDSLRTFLGEYLHWPVTKTDQYLLPIIERQNTRNRAR 1259
Query: 361 LRANTL 366
TL
Sbjct: 1260 GNQTTL 1265
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGV+ LW +L+ + + + L+ KR+ ID S W+ Q +K R ++ L G
Sbjct: 1 MGVQGLWQLLQPVARPIKIETLEGKRLAIDSSLWLYHFQMAMRDKDGRTLSNAHIL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T R
Sbjct: 60 WRILKLLFHGVRPVFVFDGGAPAMKRKTLSGR 91
>gi|426236893|ref|XP_004012399.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Ovis aries]
Length = 1200
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 885
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLQKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 936 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 987
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN 103
RL L+ IFV DG P +K T +R + D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKT 104
>gi|403347306|gb|EJY73073.1| hypothetical protein OXYTRI_05797 [Oxytricha trifallax]
Length = 1055
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 123 KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE 182
+E K L G+P ++ EAE+QCA L + L DG + DSD+ LFGAR VYR+I+
Sbjct: 756 QELKTLLRLCGIPFVQAPFEAESQCAFLEINGLVDGVVTEDSDVLLFGARKVYRNIF-DR 814
Query: 183 RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GD 237
+ Y+M IER++G R+ LI +AL +GSDY+ GVRG+ +A +I+ S GD
Sbjct: 815 NKFAEKYDMKIIEREMGLDRDDLIKMALFMGSDYTMGVRGIAAVNAIEIINSFQGD 870
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW+ L + + L L+ + + ID+S WI+Q + + D + G R
Sbjct: 1 MGVKGLWNHLLPAARKINLEDLEGQVLAIDVSIWIIQ---FINIIQRKNDYNVIDGFLRR 57
Query: 61 LRALIALNCGLIFVSDGSIPAIK 83
+ L+ +FV DGS P IK
Sbjct: 58 ICKLLFFGIKPVFVFDGSTPQIK 80
>gi|78369362|ref|NP_001030353.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|77567831|gb|AAI07529.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Bos taurus]
gi|296481618|tpg|DAA23733.1| TPA: XPG-complementing protein [Bos taurus]
Length = 1201
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 784 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 842
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 843 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 893
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL +++ E W E N++I N D ++++ Q+ +
Sbjct: 894 LNEFPGHGLEPLRKF----SEWW------HEAQENKKIRPNPYDTKVKKKLRKLQLTPGF 943
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 944 PNPAVADAYLKPVVDESKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 995
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN 103
RL L+ IFV DG P +K T +R + D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHKKDLAASDSKT 104
>gi|345324376|ref|XP_001513433.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Ornithorhynchus anatinus]
Length = 1520
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 1107 MFLESQELLRLFGIPFIEAPMEAEAQCAILDLTDQTSGTITDDSDVWLFGARHVYKN-FF 1165
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ ++ Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1166 NKNKFIEYYQYGDFYNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1216
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + E W+ E N++I N D ++++ Q+ +
Sbjct: 1217 LNEFPGHGLEPLLHF----SEWWN------EAQKNKKIRPNPHDTKVKKKLRQLQLAPGF 1266
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ ++ Q C ++F W KTDE +LP + + ++
Sbjct: 1267 PNPAVAEAYLRPVVDESRGAFLWGKPDAEKIRQFCQRYFGWNKTKTDESLLPVLKQLNIH 1326
Query: 357 RFANLRANTL 366
+ LR ++
Sbjct: 1327 Q-TQLRIDSF 1335
>gi|213404960|ref|XP_002173252.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
gi|212001299|gb|EEB06959.1| DNA-repair protein rad13 [Schizosaccharomyces japonicus yFS275]
Length = 1199
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M++E + L G+P + +EAEAQCA L L DG + DSD+FLFG +YR+++
Sbjct: 826 MVRECQELLRYFGLPYIVAPQEAEAQCAKLLELKLVDGVVTDDSDVFLFGGTRIYRNMF- 884
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 239
+ +V Y D+ER GR LI LA LLGSDY++G+ +GP SA +I++ GDN
Sbjct: 885 NQSKFVELYLSSDMERDFAIGRKQLIQLAYLLGSDYTEGLSSVGPVSAVEILREFPGDNP 944
Query: 240 VLQ------RIAS 246
+++ RIAS
Sbjct: 945 LIEFKRWFLRIAS 957
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ILE + + L L NKR+ ID S WI Q L+ V Q + G F
Sbjct: 1 MGVTGLWSILEPVNRPVKLETLANKRLAIDASIWIYQFLKAVRDKEGEQMKHSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R+R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPMLKRQTIRKR 91
>gi|62088204|dbj|BAD92549.1| DNA-repair protein complementing XP-G cells variant [Homo sapiens]
Length = 1611
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1193 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1251
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1252 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1302
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1303 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1352
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1353 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1412
Query: 357 R 357
+
Sbjct: 1413 Q 1413
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 122/270 (45%), Gaps = 41/270 (15%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 1026 RRDADEVTQTMIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 1085
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ G R LI +A LLGSDY++GV G+GP +A +
Sbjct: 1086 GTRIYKNMF-NQAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDYTEGVPGVGPVTALE 1144
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVNGT 283
I+ D L+ KE W+ K + S ++ N +
Sbjct: 1145 IISEFPD---LEEF---------------KEWWTAVQMNERPKSEDAGNSFRKKFRRNAS 1186
Query: 284 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWP 338
L P +V AY P+ ADS+A FQ +L W
Sbjct: 1187 KLFLPHGFPDKRVEMAYLEPEV-DADSQA---------FQWGVPDLDKLRSFLMATIGWT 1236
Query: 339 PEKTDEYILPKIAERDLRRFANLRANTLAL 368
E+TDE ++P I + + R +AN A
Sbjct: 1237 QERTDEVLVPVIKDMNRRLDEGTQANITAF 1266
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW IL+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T R R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRAR 91
>gi|324715041|ref|NP_001191354.1| BIVM-ERCC5 protein [Homo sapiens]
Length = 1640
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1222 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1280
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1281 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1331
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1332 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1381
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1382 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1441
Query: 357 R 357
+
Sbjct: 1442 Q 1442
>gi|338715323|ref|XP_001494708.3| PREDICTED: DNA repair protein complementing XP-G cells [Equus
caballus]
Length = 1190
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 773 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 831
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 832 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 882
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W+ E N++I N D ++++ Q+ +
Sbjct: 883 LNEFPGHGLEPLLKF----SEWWN------EAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 932
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + +++
Sbjct: 933 PNPAVADAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDETLFPVLKQLNVQ 992
Query: 357 R 357
+
Sbjct: 993 Q 993
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R + T D +
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLATSDSR 103
>gi|390457518|ref|XP_002742570.2| PREDICTED: DNA repair protein complementing XP-G cells [Callithrix
jacchus]
Length = 1638
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1222 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1280
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1281 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1331
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1332 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTAGF 1381
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V A +L+ L ++ C ++F W KTDE + P
Sbjct: 1382 PNPAVAEAYLKPVVDDSQASYLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 1433
>gi|410215558|gb|JAA04998.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410261564|gb|JAA18748.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410301776|gb|JAA29488.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
gi|410335601|gb|JAA36747.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Pan troglodytes]
Length = 1186
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|51988900|ref|NP_000114.2| DNA repair protein complementing XP-G cells [Homo sapiens]
gi|21619256|gb|AAH31522.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|24079971|gb|AAN46091.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Homo sapiens]
gi|61364768|gb|AAX42600.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
gi|123981830|gb|ABM82744.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
gi|123996661|gb|ABM85932.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)) [synthetic
construct]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|298111|emb|CAA49598.1| XP-G factor [Homo sapiens]
gi|119629476|gb|EAX09071.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 (xeroderma pigmentosum,
complementation group G (Cockayne syndrome)), isoform
CRA_a [Homo sapiens]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|332841607|ref|XP_003314253.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Pan troglodytes]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-DKNLDKMSSLRR-- 112
G F R+ L+ +FV DG+ PA+K T R + + V Q K +++ SL+
Sbjct: 32 GFFRRICKLLFYGILPVFVFDGATPALKRQTIASRRHRRATVEQSLRKTAERILSLQLQK 91
Query: 113 -----NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
N SC+ L G+P + EAE+QCA L + L +G + DSD+F
Sbjct: 92 RALIVNWQQRKSCV----PLLLFIFGIPYIVATTEAESQCAFLQKQGLVEGIVTDDSDVF 147
Query: 168 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+FG VY++++ R V Y MD ++ +LG R LI LA LLGSDY+ G+ G+GP +
Sbjct: 148 VFGGEVVYKNMFTQTRS-VEIYTMDRLQEQLGLSREKLILLAYLLGSDYTPGLVGIGPVT 206
Query: 228 ACQIV 232
+ +I+
Sbjct: 207 SVEIL 211
>gi|60811379|gb|AAX36171.1| excision repair cross-complementing rodent repair deficiency
complementation group 5 [synthetic construct]
Length = 1187
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|33187721|gb|AAP97715.1|AF462447_1 excision repair protein ERCC5 [Homo sapiens]
gi|306742|gb|AAC37533.1| excision repair protein [Homo sapiens]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|397524400|ref|XP_003832181.1| PREDICTED: DNA repair protein complementing XP-G cells [Pan paniscus]
Length = 1754
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 1336 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 1394
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1395 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1445
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1446 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1495
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1496 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1555
Query: 357 R 357
+
Sbjct: 1556 Q 1556
>gi|205371791|sp|P28715.3|ERCC5_HUMAN RecName: Full=DNA repair protein complementing XP-G cells; AltName:
Full=DNA excision repair protein ERCC-5; AltName:
Full=Xeroderma pigmentosum group G-complementing protein
gi|9587154|gb|AAF89179.1| xeroderma pigmentosum complementation group G protein splice
variant [Homo sapiens]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 118/249 (47%), Gaps = 19/249 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ + MI E +AL G+P + EAEAQCA L+NL L DG + D DIFLF
Sbjct: 991 RRDADEVTTVMISECQALLRLFGLPYITAPMEAEAQCAELVNL-GLVDGVVTDDCDIFLF 1049
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + YV CY DIE++L R+ LI +A LLGSDY++G+ G+GP +A
Sbjct: 1050 GGTRVYKNMFNSNK-YVECYLASDIEKELSLSRDQLIAIAHLLGSDYTEGLPGVGPVTAI 1108
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI-NVNGTDHSLQ 288
+I+ + +GL K S + + N + + ++ T L
Sbjct: 1109 EILSEF--------PSKDGLEEFKEWFTSIQRPHAPPLNTESSTFRKKFRRQQATKLFLP 1160
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P V +AY P+ + + +L W E+TDE ++P
Sbjct: 1161 TGFPSKAVTEAYWKPEV-----DKTPEAFQWGVPDLEKLRDFLMATIGWSQERTDEVLVP 1215
Query: 349 KIAERDLRR 357
I RD+ R
Sbjct: 1216 VI--RDMNR 1222
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW +L + PL L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTSLWPLLAPSARPTPLPTLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T RR
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTVLRR 91
>gi|426375915|ref|XP_004054761.1| PREDICTED: DNA repair protein complementing XP-G cells [Gorilla
gorilla gorilla]
Length = 1186
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|356561651|ref|XP_003549093.1| PREDICTED: flap endonuclease GEN-like 2-like [Glycine max]
Length = 94
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%)
Query: 302 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANL 361
NPKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP IAER+LRRFANL
Sbjct: 2 NPKCHQADSDIVHKGLAQYPFQRTKLQQICVGFFEWPSEKTDGYILPSIAERNLRRFANL 61
Query: 362 RANTLALGVDLPLQKV 377
R + +G++LPL ++
Sbjct: 62 RLTSSEVGMNLPLHEL 77
>gi|9930001|dbj|BAB12157.1| hypothetical protein [Macaca fascicularis]
Length = 415
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 24/238 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 59
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 60 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 110
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 111 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 160
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERD 354
NP A V L+ L ++ C ++F W KTDE + P + + D
Sbjct: 161 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLD 218
>gi|357620639|gb|EHJ72769.1| hypothetical protein KGM_08405 [Danaus plexippus]
Length = 1103
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
K+ + RN+ + M KEA+ L G+P + EAEAQCA+L L DG + DSD
Sbjct: 697 KLDRIGRNITEQ---MTKEAQELLQIFGIPYIVAPMEAEAQCAVLEALKLTDGTITDDSD 753
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
I+LFG RTVY++ + ++ +V+ + + IE+ R L+ LALL+GSDY+ GV G+GP
Sbjct: 754 IWLFGGRTVYKN-FFNQKKHVLQFLRERIEKSFNLSREKLVLLALLVGSDYTVGVTGVGP 812
Query: 226 ESACQIVKS 234
+A +I+ S
Sbjct: 813 VTALEILAS 821
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL----QNVNKSYRPQTDKLFLRG 56
MGV LW ++E K +P+ L+NK + +D+S W+ Q+ Q+ + P L G
Sbjct: 1 MGVTGLWRLIEPAGKPVPVETLENKVLAVDISIWLHQMVKGYQDAKGAPLPNA---HLIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
LF RL L+ +FV DG P +K T +R QD+K K +S +
Sbjct: 58 LFQRLCKLLYFRIKPVFVFDGGFPDLKRETIAKR--------QDNKT--KYNSASEKLKR 107
Query: 117 EFSCMIKEAKALGLSLG 133
E + ++ + A+G LG
Sbjct: 108 EITLLLGKKTAIGSLLG 124
>gi|194378226|dbj|BAG57863.1| unnamed protein product [Homo sapiens]
Length = 1018
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 600 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 658
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 659 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 709
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 710 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 759
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 760 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 819
Query: 357 R 357
+
Sbjct: 820 Q 820
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 713 EKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 773 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 831
Query: 225 PESACQIVKSVGD 237
P A +I+ G+
Sbjct: 832 PVQAMEILAEFGN 844
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV +LW I+ + + L L K++ ID S WI Q +++ + + P + + G
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSS---HIIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY-----RRRLNSGS 95
F R+ L+ IFV DG +PA+K T RR NS S
Sbjct: 58 FFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSES 101
>gi|320167228|gb|EFW44127.1| DNA-repair protein rad13 [Capsaspora owczarzaki ATCC 30864]
Length = 1235
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+++ R++ S S MI + + L G+P L EAEAQCA L+L + DG + DSD
Sbjct: 874 ELNRYERDVASVDSEMIADTQELLRLFGMPYLTAPMEAEAQCAALDLAGITDGTITEDSD 933
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
+FLFGAR VYR+ + Y Y IE L R LI LALLLGSDY+ GV +GP
Sbjct: 934 VFLFGARRVYRN-FFNPNKYAEFYASSAIESYLALDREKLIDLALLLGSDYTSGVERIGP 992
Query: 226 ESACQIVKSVGDNVVLQRIAS 246
A +I +GD LQ A+
Sbjct: 993 VLAMEI---LGDFPSLQEFAT 1010
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGVK LW IL++ +++ L L + + ID+S W+ Q + + L GLF
Sbjct: 52 MGVKGLWTILDAAGQSVNLDTLASHVLAIDVSIWLNQHMKAMRDAEGNVIRNAHLIGLFR 111
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG +PA+K T R
Sbjct: 112 RLCKLLYYGIKPLFVYDGGVPALKRRTLAGR 142
>gi|301758086|ref|XP_002914899.1| PREDICTED: DNA repair protein complementing XP-G cells-like
[Ailuropoda melanoleuca]
Length = 1644
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1228 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1286
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1287 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1337
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 1338 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 1387
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 1388 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 1439
>gi|281350378|gb|EFB25962.1| hypothetical protein PANDA_002828 [Ailuropoda melanoleuca]
Length = 1192
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 885
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 936 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 987
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVHGLWKLLECSGRQVNPETLEGKILAVDISIWLNQALRGVRDCHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R + T D +
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRHRKDLATTDSR 103
>gi|355686469|gb|AER98068.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mustela putorius furo]
Length = 1003
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 587 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 645
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 646 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 696
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 697 LNEFPGPGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 746
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 747 PNPAVADAYLKPVVDESRGAFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 798
>gi|359322522|ref|XP_003639860.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Canis
lupus familiaris]
Length = 1185
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 769 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 827
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 828 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 878
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 879 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 928
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 929 PNPAVADAYLKPVVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 980
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE + + L+ K + +D+S W+ Q L+ V + L LFH
Sbjct: 1 MGVHGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDCHGNSIGNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 91
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 713 EKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDDS 772
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 773 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 831
Query: 225 PESACQIVKSVGD 237
P A +I+ G+
Sbjct: 832 PVQAMEILAEFGN 844
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV +LW I+ + + L L K++ ID S WI Q +++ + + P + + G
Sbjct: 1 MGVHSLWKIVGPTARPVRLEALSKKKLAIDASIWIYQFLKAMRDKDGNSLPSS---HIIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY-----RRRLNSGS 95
F R+ L+ IFV DG +PA+K T RR NS S
Sbjct: 58 FFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSES 101
>gi|297274787|ref|XP_001096257.2| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Macaca mulatta]
Length = 1182
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKR 91
>gi|380810474|gb|AFE77112.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
gi|383416485|gb|AFH31456.1| DNA repair protein complementing XP-G cells [Macaca mulatta]
Length = 1182
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKR 91
>gi|254573770|ref|XP_002493994.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|238033793|emb|CAY71815.1| Single-stranded DNA endonuclease, cleaves single-stranded DNA
during nucleotide excision repair [Komagataella pastoris
GS115]
gi|328354189|emb|CCA40586.1| DNA repair protein complementing XP-G cells [Komagataella pastoris
CBS 7435]
Length = 1043
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + + G+P + EAEAQCA L L DG + DSD FLFG +Y++++
Sbjct: 767 MIDDIQDMLTRFGIPYITAPMEAEAQCAELLKLKLVDGIITDDSDCFLFGGERIYKNMF- 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
E+ YV CY +++I+R LG RN +I +ALL+GSDY++G++G+G +A +I+
Sbjct: 826 NEKQYVECYFLEEIQRDLGLTRNKMIEIALLVGSDYTEGIKGIGIVTAMEIL 877
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----LRG 56
MGV LW++L + + L L K++ +D S WI Q K+ R + + F + G
Sbjct: 1 MGVHQLWNVLGPTARPVRLEALSRKKLAVDASIWIYQFL---KAVRDKEGRAFASSHIVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLST 86
F R+ L+ +FV DG P +K T
Sbjct: 58 FFKRICKLLFFGIEPVFVFDGGAPILKRKT 87
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 117/264 (44%), Gaps = 33/264 (12%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 857 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFG 916
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYLGGDLEKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 231 IVKSVGDNVVLQRIAS-----EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 285
I+ L+ + S K A S F+ + GT
Sbjct: 976 ILSEFPGKSGLEDFRDWWKEVQSQSRPKEADASSPFRKKFRRS------------QGTKL 1023
Query: 286 SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPE 340
L P V DAY NP+ ++ FQ L Q W E
Sbjct: 1024 FLPPGFPSPAVFDAYLNPEVDDSNES----------FQWGVPDVEGLRQFLMATIGWSKE 1073
Query: 341 KTDEYILPKIAERDLRRFANLRAN 364
+TDE ++P I + + R ++N
Sbjct: 1074 RTDEVLVPVIKDMNKRDREGTQSN 1097
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRR 89
R+ L+ +FV DG P +K T ++
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPVLKRQTIQQ 90
>gi|124360865|gb|ABN08837.1| Helix-hairpin-helix motif, class 2 [Medicago truncatula]
Length = 547
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 72 IFVSDGSIPAIKLSTYRRRL--NSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALG 129
+FV DG+ +K R +SG E T + +S+ R S FS ++E L
Sbjct: 6 VFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRN---STFSRCVQECVELA 62
Query: 130 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 189
LG+P L+ EAEA CA LN E D C + DSD FLFGA+ + + + CY
Sbjct: 63 KLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFSPNSKEPFECY 122
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEG 248
M DIE LG R LI ++LL+G+D+ GV+G+G +SA + V++ G++ +L R+ G
Sbjct: 123 NMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGIDSALRFVQAFGEDDILNRLHEIG 182
>gi|348583617|ref|XP_003477569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells-like [Cavia porcellus]
Length = 1169
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 23/233 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 750 MFLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITEDSDIWLFGARHVYKN-FF 808
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 239
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ G +
Sbjct: 809 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCITAMEILNEFPGHGM 868
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L IAS +E W +E N +I N D ++++ Q+
Sbjct: 869 NLCLIASR-----------YREWW------QEAQKNPKIRPNPHDTKVKKKLRKLQLTPG 911
Query: 300 YSNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
+ NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 912 FPNPAVADAYLRPVVDDSKGSFLWGRPDVDKIREFCQRYFGWSRTKTDESLFP 964
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LES + + L+ K + +D+S W+ Q L+ V + L LFH
Sbjct: 1 MGVQGLWKLLESSGRQVSPEALEGKVLAVDISIWLNQALKGVRDRQGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 91
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 91 LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL 150
LN + +T++ +++ +R+ MI + + L G+P L EAEAQC L
Sbjct: 667 LNITTSITEEQLLQERLLKQKRDSEEVTQAMINDVQELLRRFGIPFLTAPMEAEAQCVEL 726
Query: 151 NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLAL 210
L DG + DSD FLFG VY++++ ++ +V CY +D+ KLG + LI L L
Sbjct: 727 LKLGLVDGIVTDDSDTFLFGGDRVYKNMF-NQKQFVECYLSEDVSGKLGLSQEKLIELGL 785
Query: 211 LLGSDYSQGVRGLGPESACQIVKSVG 236
LLGSDY++GV+G+GP A +I+ G
Sbjct: 786 LLGSDYTEGVKGIGPVLAMEILAEFG 811
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LWDIL + + L L KR+ +D S WI Q L+ V S + G F
Sbjct: 1 MGVNSLWDILGPTARPVRLEALTRKRLAVDASIWIYQFLKAVRDSEGNTLHSSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +F+ DG PA+K T ++R
Sbjct: 61 RICKLLYFGIQPVFIFDGGAPALKRDTIKKR 91
>gi|148226745|ref|NP_001081629.1| DNA repair protein complementing XP-G cells homolog [Xenopus laevis]
gi|50416246|gb|AAH77363.1| XPGC protein [Xenopus laevis]
Length = 1197
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 26/233 (11%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 802 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 860
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 861 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 911
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L +GL + + KE WS E ++++ N D ++++ ++ ++
Sbjct: 912 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLELQQSF 961
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 348
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 962 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1013
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ L LFH
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD 100
RL L+ IFV DG P +K T +R + + D
Sbjct: 61 RLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASND 101
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 903 RRDADEVSQVMVTECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 962
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ G + +V CY D+E++L + +LI+LA LLGSDY+ G+ G+GP +A +
Sbjct: 963 GTRVYKNMFNGNK-FVECYLASDLEKELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVE 1021
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L R A + V+ + N +GWS +S T L
Sbjct: 1022 ILSEFPGPDGLSRFA-DWWRQVQSSLNVSTDGWSSFLRKFRKS-------QATRLFLPPG 1073
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P V +AY P+ S D E A L + L W E+TDE ++P I
Sbjct: 1074 FPSPAVPEAYLKPEVDS-DPEPFQ-WGAPDL---SGLRDFLMATIGWSQERTDEVLVPVI 1128
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1129 --RDINR 1133
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWQVLQPCARPTKLEMLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVIGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K +T
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPVLKRAT 87
>gi|297274789|ref|XP_002800868.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 2
[Macaca mulatta]
Length = 1040
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 626 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 684
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 685 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 735
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 736 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 785
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 786 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 845
Query: 357 R 357
+
Sbjct: 846 Q 846
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 897 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 956
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY + DIE++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 957 GTRVYKNMFNSNK-FVECYLVGDIEKELSLSREQLISLAHLLGSDYTEGLPGVGPVTAVE 1015
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L+ E V+ K S K GT L
Sbjct: 1016 ILSEFPGKSGLENF-REWWRSVQSQTRPKDADVSTPFRKKFRK------SQGTKLFLPPG 1068
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDEY 345
P V DAY +P+ ++ FQ L Q W E+TDE
Sbjct: 1069 FPNPAVYDAYLHPEVDDSNEN----------FQWGVPDVEGLRQFLMATIGWSKERTDEV 1118
Query: 346 ILPKIAERDLRRFANLRAN 364
++P I + + R ++N
Sbjct: 1119 LVPVIKDMNKRDREGTQSN 1137
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPILKRQT 87
>gi|356577959|ref|XP_003557088.1| PREDICTED: flap endonuclease GEN-like 2-like, partial [Glycine max]
Length = 76
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 302 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANL 361
NPKC+ ADS+ VH+ LAQ+ FQ +L Q+C FF+WP EKTD YILP IAER+LRRFANL
Sbjct: 2 NPKCHQADSDIVHKGLAQYPFQRTKLQQICVGFFEWPSEKTDGYILPSIAERNLRRFANL 61
Query: 362 RANTLALGVDLPLQK 376
R + +G++LPL +
Sbjct: 62 RLTSSEVGMNLPLHE 76
>gi|443691424|gb|ELT93282.1| hypothetical protein CAPTEDRAFT_209048 [Capitella teleta]
Length = 270
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 17/241 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW +L+ + L+ + + +D + W+++ + + K L+ R
Sbjct: 1 MGVTHLWPLLKPAGQIYSWEDLRGRTLAVDSAIWLMETEQI------PCRKPHLKNALSR 54
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L+ + L+FV +G +K +T +R S S V + ++L + EFS
Sbjct: 55 IMTLMRHDVRLVFVLEGQKKELKAATLAKR--SASPVKKACRSLFPPAP-------EFSS 105
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++E + L LG+P ++ EAEA C +LN + +G ++DSD FLFGA VY++
Sbjct: 106 KVREMQHLLDLLGIPSVQSSGEAEALCGVLNERGVVEGVITNDSDAFLFGATKVYKNFTA 165
Query: 181 --GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ Y M ++ LG R L+ LALL G D++ G +G+G A +++K G
Sbjct: 166 NKAKESEQEVYRMKRLQGLLGADRKGLVALALLAGCDFTSGSQGVGSTGALKLLKHWGPQ 225
Query: 239 V 239
V
Sbjct: 226 V 226
>gi|402902426|ref|XP_003914105.1| PREDICTED: DNA repair protein complementing XP-G cells [Papio anubis]
Length = 1814
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1400 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1458
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1459 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1509
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1510 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1559
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1560 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1619
Query: 357 R 357
+
Sbjct: 1620 Q 1620
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 124/268 (46%), Gaps = 41/268 (15%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ MI E +AL G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 888 RRDADEVTQVMITECQALLRLFGIPYVTAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 946
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + +V CY + DIE++L R LI+LA LLGSDY++G+ G+GP +A
Sbjct: 947 GGTRVYKNMFNSNK-FVECYLVSDIEKELSLTREQLISLAHLLGSDYTEGLPGVGPVTAV 1005
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEI-------NVN 281
+I+ GL N+ +E W S + + + +
Sbjct: 1006 EILSEF--------PGRSGL-------NNFREWWKSVQSQTRPKDADVSTPFRKKFRKSQ 1050
Query: 282 GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQ 336
GT L P V DAY +P+ ++ + FQ L Q
Sbjct: 1051 GTKLFLPPSFPSPAVNDAYLHPEVDDSNED----------FQWGVPDVEGLRQFLMATIG 1100
Query: 337 WPPEKTDEYILPKIAERDLRRFANLRAN 364
W E+TDE ++P I + + R ++N
Sbjct: 1101 WSKERTDEVLVPVIKDMNKRDREGTQSN 1128
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T + R
Sbjct: 61 RICKLLWFGILPVFVFDGGAPVLKRQTIQHR 91
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 120/256 (46%), Gaps = 20/256 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 932 RRDADEVTQTMISECQQLLALFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 990
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + +V CY D+ + R LI +A LLGSDY++G+ G+GP +A
Sbjct: 991 GGTRVYKNMFNAAK-FVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGIPGIGPVTAL 1049
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 288
+I+ D L+ ++ + + G K ++ + S + N T L
Sbjct: 1050 EILSEFQD-----------LTAFRKWWDGVQNGSIKKSDDAQSSFRRRFRKNQATKLFLP 1098
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P +V DAY NP+ S+ + A L + W E+TDE ++P
Sbjct: 1099 ASFPDPRVADAYLNPEVDSS-----PEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVP 1153
Query: 349 KIAERDLRRFANLRAN 364
I + + R +AN
Sbjct: 1154 VIRDMNRREKEGTQAN 1169
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD 101
R+ L+ + +FV DG PA+K T R R S E +DD
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTIRHR-KSRREGRRDD 101
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K +R+ MI + + L G+P + EAEAQCA L L DG + DS
Sbjct: 715 EKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDDS 774
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D FLFG +Y++++ ++ YV Y DD+ K+ ++ LI LALLLGSDY++G++G+G
Sbjct: 775 DCFLFGGDKIYKNMF-DQKQYVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGIKGIG 833
Query: 225 PESACQIVKSVGD 237
P A +I+ G+
Sbjct: 834 PVQAMEILAEFGN 846
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ----LQNVNKSYRPQTDKLFLRG 56
MGV +LW I+ + + L L K++ ID S WI Q +++ + + P + + G
Sbjct: 1 MGVHSLWKIIGPTARPVRLEALSRKKLAIDASIWIYQFLKAMRDKDGNSLPSS---HIIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY---RRRLNSGSEVTQD 100
F R+ L+ IFV DG +P +K T R+R SE Q+
Sbjct: 58 FFRRICKLLYFGILPIFVFDGGVPVLKKQTINNRRQRREKNSESRQE 104
>gi|332242072|ref|XP_003270208.1| PREDICTED: DNA repair protein complementing XP-G cells isoform 1
[Nomascus leucogenys]
Length = 1189
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWWH------EAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAIAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + ID+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAIDISIWLNQALKGVRDRHGDPIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|417406083|gb|JAA49718.1| Putative 5'-3' exonuclease [Desmodus rotundus]
Length = 1189
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 775 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 833
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++GV +G +A +I
Sbjct: 834 NKNKFVEYYQYVDFHNQLGLDRNKLIILAYLLGSDYTEGVPTVGCVTAMEI--------- 884
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------- 291
L +GL + E W E N++I N D ++++
Sbjct: 885 LNEFPGQGLEPLLNF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLPLGF 934
Query: 292 PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
P + V DAY P V L+ L ++ C ++F W KTDE + P
Sbjct: 935 PNTAVADAYLKP--------VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 986
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQISPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R + T D +
Sbjct: 61 RLCKLLFFRIRPIFVFDGDTPLLKKQTLAKRRHKKDLATNDSR 103
>gi|297694381|ref|XP_002824460.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Pongo abelii]
Length = 1899
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1481 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1539
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1540 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1590
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1591 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPYDTKVKKKLRTLQLTPGF 1640
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 1641 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 1700
Query: 357 R 357
+
Sbjct: 1701 Q 1701
>gi|267421|sp|P14629.1|ERCC5_XENLA RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=Xeroderma pigmentosum group G-complementing
protein homolog
gi|312433|emb|CAA49597.1| XP-G related factor [Xenopus laevis]
Length = 1196
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 801 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 859
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 860 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 910
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L +GL + + KE WS E ++++ N D ++++ + ++
Sbjct: 911 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLDLQQSF 960
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 348
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 961 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1012
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ L LFH
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD 100
RL L+ IFV DG P +K T +R + + D
Sbjct: 61 RLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASND 101
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L +L DG + DSDIFLFG
Sbjct: 861 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLNLVDGIVTDDSDIFLFG 920
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + YV CY D+E +L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 921 GTRVYKNVFNSNK-YVECYLATDLETELSLSREQLISLAQLLGSDYTEGLPGVGPVTALE 979
Query: 231 IV 232
I+
Sbjct: 980 IL 981
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +++ C + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTVVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWYGVKPVFVFDGGAPALKRAT 87
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 31/265 (11%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 1013 RRDADEVTQIMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 1072
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R+ LI +A LLGSDY+ G+ G+GP +A +
Sbjct: 1073 GTRIYKNMF-NQAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALE 1131
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVNGT 283
I+ G L++ KE W+ K + + ++ N T
Sbjct: 1132 IISEFGS---LEKF---------------KEWWTAVQMNQIPKEADAKIPFRKKFRKNAT 1173
Query: 284 DHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTD 343
L P ++V AY P D + + A L W E+TD
Sbjct: 1174 KLFLPPAFPDARVELAYQQP-----DVDPTQEAFQWGVPDLAALRSFLMATIGWNEERTD 1228
Query: 344 EYILPKIAERDLRRFANLRANTLAL 368
E ++P I + + R +AN A
Sbjct: 1229 EVLVPVIKDMNRRTDEGTQANITAF 1253
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW IL+ C + + L +R+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWQILQPCARPTKIETLNRRRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T R R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRAR 91
>gi|395527335|ref|XP_003765805.1| PREDICTED: uncharacterized protein LOC100931484 [Sarcophilus
harrisii]
Length = 1088
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 30/235 (12%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 671 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFS 730
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ +V Y+ D +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 731 KDK-FVEYYQYIDFHNQLGLDRSKLINLAYLLGSDYTEGIPSVGCVTAMEI--------- 780
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W+ E ++I N D ++++ Q+ +
Sbjct: 781 LNEFPGRGLEPLLKF----SEWWN------EAQKTKKIRPNPHDTKVKKKLRQLQLFPGF 830
Query: 301 SNPKCYSA-------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
NP A DS+ L ++ + C ++F W KTDE +LP
Sbjct: 831 PNPAVAEAYLKPVVDDSKGAFLWGKPDL---EKIREFCQRYFGWNKTKTDESLLP 882
>gi|403272924|ref|XP_003928284.1| PREDICTED: DNA repair protein complementing XP-G cells [Saimiri
boliviensis boliviensis]
Length = 1638
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 1221 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 1279
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 1280 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1330
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 1331 LNEFPGRGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 1380
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ L ++ C ++F W KTDE + P
Sbjct: 1381 PNPAIAEAYLKPVVDDSQGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 1432
>gi|74211217|dbj|BAE37682.1| unnamed protein product [Mus musculus]
Length = 1043
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFQESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 18/254 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 806 RRDADEVSHIMVTECQQLLKLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 865
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY + D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRVYKNMF-NQAKFVECYLVSDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ D L K + + G S ++ ++ N L
Sbjct: 925 ILTEFSD-----------LEDFKDWWSQVQMGVSI-PDDVHSKFRKKFKKNAAKLFLPPA 972
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ S S V +H + V W PE+TDE ++P I
Sbjct: 973 FPDRRVDAAYLEPEVDSDPSAFQWGVPDLEALRHFLMTAVG-----WSPERTDEVLVPVI 1027
Query: 351 AERDLRRFANLRAN 364
+ + R +AN
Sbjct: 1028 RDVNRRELEGTQAN 1041
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVLKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQT 87
>gi|298711922|emb|CBJ48609.1| DNA repair enzyme [Ectocarpus siliculosus]
Length = 1835
Score = 102 bits (255), Expect = 5e-19, Method: Composition-based stats.
Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 35/262 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E L GVP + EAEAQC +L L DG + DSD F FG R VY++I+
Sbjct: 1304 MKEEVMDLLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIF- 1362
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+R +V Y + D E+ LG G + ++ LALLLGSDY++GVRG+G +A +++ + +
Sbjct: 1363 SDRKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFP---L 1419
Query: 241 LQRIASEGLSFVKR-------AKNSKKEGWSFKCNNKE-ESLNQEINVNGTDHSLQRET- 291
+ A GLS K+ + + EG + + + KE + L+ E+ + H R
Sbjct: 1420 EGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFH-LKHRTARNRW 1478
Query: 292 ------PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPE 340
P +VI+AY+NP+ V R ++ F A L +C + W +
Sbjct: 1479 TVPDGFPSEEVINAYNNPQ--------VDR--SEEPFSWAAPDVDGLMALCQRVLGWDRD 1528
Query: 341 KTDEYILPKIAERDLRRFANLR 362
++D ++P + E D FA R
Sbjct: 1529 QSDGLLMPMVKELDRGSFAQSR 1550
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 25/136 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYRPQTDK 51
MG+KNLW +L +++ + L K + +D+S W+ Q + V ++ T +
Sbjct: 1 MGIKNLWQLLSPVGRSVSIETLAGKTLAVDVSIWLTQFIKAMRDDDGKVVKNAHIIGTLR 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
++ LFHR+R +FV DG PA+K T R SE T SS+R
Sbjct: 61 RVVKLLFHRIRP--------VFVFDGGAPALKARTLAARRKLRSEGTD--------SSVR 104
Query: 112 RNMGSEFSCMIKEAKA 127
+ + +K+ KA
Sbjct: 105 KTAQRILASQLKKHKA 120
>gi|291235424|ref|XP_002737645.1| PREDICTED: DNA-repair protein complementing XP-G cells homolog
[Saccoglossus kowalevskii]
Length = 854
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M EAK L G+P + V+EAEAQCA LNL G + DSDI+LFG + VY++++
Sbjct: 659 MYVEAKELLTLFGLPYITSVQEAEAQCAYLNLTDQTYGTITDDSDIWLFGGKRVYKNMF- 717
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ +V CY ++IER+L R+ +I +A L+GSDY+ G+ G+G +A +++
Sbjct: 718 NQKKFVECYIAENIERQLLLNRDKMIQIAYLVGSDYTTGITGIGGVTAMELL 769
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGVK LW +LES + + L L+ K + +D+S W+ Q ++ + L LF+
Sbjct: 1 MGVKGLWRLLESTGQPVTLESLEGKILAVDISLWLNQAVKGMRGRDGNPIANAHLVVLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R
Sbjct: 61 RICKLLFYRIKPVFVFDGGVPLLKKQTLALR 91
>gi|452824082|gb|EME31087.1| DNA excision repair protein ERCC-5 [Galdieria sulphuraria]
Length = 928
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 12/238 (5%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E + L LG+P ++ EAEAQCA + L +G + DSD FLFGA+TV+R+I+
Sbjct: 614 MCEEIRELLRMLGIPYIQAPMEAEAQCAYFSQVGLVEGVVTEDSDAFLFGAKTVFRNIF- 672
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ YV YEM+DIER LG R LI L+LLLGSDY+QG+ G+G +A +I+++
Sbjct: 673 EDKKYVEQYEMEDIERYLGLNREKLILLSLLLGSDYTQGIHGVGVVNATEIMRAFPSFEE 732
Query: 241 LQRIA--SEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
L A + LS + + E +F N+ ++++ N H P V+D
Sbjct: 733 LIEFAHWANQLSLKEERISLDSEDPNF-VKNEFFLKHRKMKRNWVIHD---SFPNKHVVD 788
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLR 356
AY P ++ E A+L + C F W +K + ++P + D R
Sbjct: 789 AYRYPMVDTSSIE-----FHCQRPNIAQLVEFCRAKFGWNSDKVKKLVIPVLKAYDAR 841
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGVK LW+++ + + L ++NK + +D+S W+ Q L + S L G+
Sbjct: 1 MGVKGLWELVAPVGRRVSLDTVRNKTLAVDVSIWLTQFLYAMRDSEGELIRNAHLLGILR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS 93
R LI N IFV DG+ P +K RR LNS
Sbjct: 61 RCCKLIFYNVTPIFVFDGATPQLK----RRTLNS 90
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 7/134 (5%)
Query: 112 RNMGSEFSCMIKEAKALGLSL----GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
RNM + S + E K L L G+P +E EAEAQCA L L DG + DSDIF
Sbjct: 4 RNMERDISTITDEMKEDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIF 63
Query: 168 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+FG R VY++ + E+ YV Y D E++L G++ +I LA+LLG DY+ GV+G+G +
Sbjct: 64 VFGGRKVYKN-FFNEQQYVEAYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVN 122
Query: 228 ACQIVKS--VGDNV 239
+I+++ +G+++
Sbjct: 123 GMEILQAFPIGEDI 136
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 131/296 (44%), Gaps = 39/296 (13%)
Query: 78 SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR------RNMGSEFS-CMIKEAKALGL 130
+I A + + + LN+ SE D + +LR R E S MI E +AL
Sbjct: 883 AIEAEEHARFASTLNNKSEKENHDSYEQDLKALRNQQKKDRRDADEVSHIMITECQALLR 942
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 190
G+P + EAEAQCA L L DG + DSDIFLFG VY++++ + V CY
Sbjct: 943 LFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK-LVECYL 1001
Query: 191 MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS 250
D+E++L R LI++A LLGSDY++G+ G+GP +A +I+ + L+
Sbjct: 1002 SSDLEKELSLSREQLISIAHLLGSDYTEGIPGIGPVTAVEILSEFPSHAGLEEF------ 1055
Query: 251 FVKRAKNSKKEGWSFKCN-------NKEESLNQEI--NVNGTDHSLQRETPFSQVIDAYS 301
KE WS N E +L ++ T L P V +AY
Sbjct: 1056 ---------KEWWSLVQNPLTTLPLASEPTLFRKKFRRSQATKLFLPPAFPSQAVTEAYL 1106
Query: 302 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
P D ++ + +L + W E+ DE ++P I RD+ R
Sbjct: 1107 KP-----DVDSTAEAFQWGVPDLGQLREFLMATVGWSQERVDEILVPVI--RDMNR 1155
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW I++ C + PL L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFHGIKPVFVFDGGAPILKRQT 87
>gi|310790037|gb|EFQ25570.1| DNA excision repair protein [Glomerella graminicola M1.001]
Length = 1271
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 116/267 (43%), Gaps = 39/267 (14%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 925 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDCFLFG 984
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++L R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 985 GTRIYKNMFNSNK-FVECYLSSDLEKELSLSREQLIAIAQLLGSDYTEGLPGVGPVTAVE 1043
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW-SFKCNNKEESLN-------QEINVNG 282
I+ L R KE W + NN+ + + +
Sbjct: 1044 ILSEFPGKDGLDRF---------------KEWWQDVQMNNRPKEADAVSPFRRKFRKSQA 1088
Query: 283 TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQW 337
T L P V DAY P+ DS H FQ L Q W
Sbjct: 1089 TKLFLPSGFPNPAVTDAYIRPEV---DSSPEH-------FQWGVPDLEGLRQFLMATIGW 1138
Query: 338 PPEKTDEYILPKIAERDLRRFANLRAN 364
E+TDE ++P I + + R + N
Sbjct: 1139 SKERTDEVLVPVIRDMNKRDMEGTQTN 1165
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T + R
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPALKRQTIQGR 91
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 120/272 (44%), Gaps = 45/272 (16%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 964 RRDADEVTHIMITECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFG 1023
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI++A LLGSDY++G+ G+GP +A +
Sbjct: 1024 GTRIYKNMF-NQAKFVECYLTSDLEKEFDLTRGKLISVAHLLGSDYTEGLPGVGPVTALE 1082
Query: 231 IVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSF-------KCNNKEESLNQEINVN 281
I+ G DN K WS K + ++ ++ N
Sbjct: 1083 IISEFGSLDNF--------------------KTWWSGVQMNQIPKSEDADKPFRKKFRRN 1122
Query: 282 GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQ 336
T L P ++V AY P+ DS+A FQ L
Sbjct: 1123 ATKIFLPPSFPDARVDIAYQEPEV---DSDA-------QAFQWGVPDLDALRSFLMATIG 1172
Query: 337 WPPEKTDEYILPKIAERDLRRFANLRANTLAL 368
W E+TDE ++P I + + R +AN A
Sbjct: 1173 WSQERTDEVLVPVIKDMNRRLDEGTQANITAF 1204
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW I++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWQIVQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T R R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRAR 91
>gi|431913228|gb|ELK14910.1| DNA repair protein complementing XP-G cell [Pteropus alecto]
Length = 1074
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 660 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 718
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 719 SKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 769
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------- 291
L GL + + E W E N++I N D ++++
Sbjct: 770 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLHLSPGF 819
Query: 292 PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
P + DAY P V L+ L ++ C ++F W KTDE + P
Sbjct: 820 PNPAIADAYLKP--------VVDDSKGSFLWGKPDLDKISIFCQRYFGWNRTKTDESLFP 871
>gi|291393206|ref|XP_002713064.1| PREDICTED: XPG-complementing protein isoform 1 [Oryctolagus
cuniculus]
Length = 1188
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 36/260 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 764 MFLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 822
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 823 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 873
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL VK + E W +E NQ+I N D ++++ Q+
Sbjct: 874 LNEFPGHGLEPLVKFS-----EWW------QEAQKNQKIRPNPHDTKVKKKLRKLQLAPG 922
Query: 300 YSNPKCYSA-------DSEAVH---RVLAQHLFQHARLH---QVCAQFFQWPPEKTDEYI 346
+ NP A DS+ + + ++ + + C ++F W KTDE +
Sbjct: 923 FPNPAVAEAYLKPVVDDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESL 982
Query: 347 LPKIAERDLRRFANLRANTL 366
LP + + ++++ LR ++
Sbjct: 983 LPVLKQLNVQQ-TQLRIDSF 1001
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 91
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 7/196 (3%)
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLST-----YRRRLNSGSEVTQDDKNLDKMSSLR 111
+FHR+ L+ +FV DG++P +K +T L E+ ++ L+ + +
Sbjct: 28 MFHRICKLLFYGIKPVFVFDGNVPELKKNTQVIAKIEDFLKLEVELNKEKIELELETRKQ 87
Query: 112 RNMGSEFSCMI-KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+ S + + + L G+P L EAEAQCA LNL L +G + DSDIFLFG
Sbjct: 88 TRQAATLSAEVYNDVQDLLQLFGIPYLVSPMEAEAQCAALNLLKLTNGTITDDSDIFLFG 147
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
A VY++I+ ++ CY D+E L R LI +A L GSDY++G+ G+G +A +
Sbjct: 148 AENVYKNIFNKDK-IPECYSSKDLETLLYLTREKLIAVAFLTGSDYTEGLPGVGGITAME 206
Query: 231 IVKSVGDNVVLQRIAS 246
I+++ + +A+
Sbjct: 207 ILQAFAKKTAEETLAN 222
>gi|395833265|ref|XP_003789660.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing XP-G
cells [Otolemur garnettii]
Length = 1650
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 24/221 (10%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+
Sbjct: 1244 FGIPYVQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQY 1302
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
D +LG RN LI LA LLGSDY++G+ +G +A +I L GL
Sbjct: 1303 VDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGHGLEP 1353
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-S 310
+ + E W+ E N +I N D ++++ Q+ + NP A
Sbjct: 1354 LLKF----SEWWN------EAQKNMKIRPNPHDTKVKKKLRKLQLTPGFPNPAVADAYLK 1403
Query: 311 EAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
V L+ R+ + C ++F W KTDE + P
Sbjct: 1404 PVVDDSKGSFLWGKPDLDRIREFCQRYFGWNRTKTDECLFP 1444
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 809 RRDADEVTQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 868
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + YV CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 869 GTRVYKNMF-NQSKYVECYLTSDMEKEYALQRRKLISFAHLLGSDYTEGISGIGPVTALE 927
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L + + G S N++ + ++ T L
Sbjct: 928 ILTEFS-----------SLEEFRDWWTQIQTGMSI-PNDQHAAFYKKFRKTATKIFLPPS 975
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P ++V AY P+ S S V H L W E+TDE ++P I
Sbjct: 976 FPDARVDTAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMTTIGWSQERTDEILVPVI 1030
Query: 351 AERDLRRFANLRANTLAL 368
+ + R +AN +
Sbjct: 1031 RDMNRREQEGTQANITSF 1048
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRET 87
>gi|354501934|ref|XP_003513043.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Cricetulus griseus]
Length = 1176
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 101 DKNLDKMSSLRRNMGSEFSC------------------MIKEAKALGLSLGVPCLEGVEE 142
D NL+++ SL N+ +E + M E++ L G+P ++ E
Sbjct: 725 DINLEELDSLESNLLAEQNSLEAQKQQQERIAASVTGQMFLESQELLRLFGIPYIQAPME 784
Query: 143 AEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 202
AEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D +LG R
Sbjct: 785 AEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVDFHNQLGLDR 843
Query: 203 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 262
N LI LA LLGSDY++G+ +G +A +I L GL + + E
Sbjct: 844 NKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGRGLDPLLKF----SEW 890
Query: 263 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEAVHRVLAQHL 321
W E ++++ N D ++++ Q+ + NP A V L
Sbjct: 891 W------HEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFL 944
Query: 322 FQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ ++ + C ++F W KTDE + P + + ++++
Sbjct: 945 WGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLNVQQ 983
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRRVSPEALEGKVLAVDISIWLNQALKGVRDRHGNPVENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKM 107
RL L+ IFV DG P +K T +RR S T + +K+
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDSASTDSRRTTEKL 109
>gi|291393208|ref|XP_002713065.1| PREDICTED: XPG-complementing protein isoform 2 [Oryctolagus
cuniculus]
Length = 1203
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 36/260 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 779 MFLESQELLRLFGIPYVEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 837
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 838 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 888
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL VK + E W +E NQ+I N D ++++ Q+
Sbjct: 889 LNEFPGHGLEPLVKFS-----EWW------QEAQKNQKIRPNPHDTKVKKKLRKLQLAPG 937
Query: 300 YSNPKCYSA-------DSEAVH---RVLAQHLFQHARLH---QVCAQFFQWPPEKTDEYI 346
+ NP A DS+ + + ++ + + C ++F W KTDE +
Sbjct: 938 FPNPAVAEAYLKPVVDDSKGAFLWGKPDPDKIREYPFILTACRFCQRYFGWNRSKTDESL 997
Query: 347 LPKIAERDLRRFANLRANTL 366
LP + + ++++ LR ++
Sbjct: 998 LPVLKQLNVQQ-TQLRIDSF 1016
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 91
>gi|410947676|ref|XP_003980569.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein complementing
XP-G cells [Felis catus]
Length = 1128
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 712 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 770
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNV 239
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+ G +
Sbjct: 771 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGL 830
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
SE +++K + + + K K L L P V DA
Sbjct: 831 EPLLKFSEWWHEAQKSKKIRPDPYDTKVXKKLRKLQ-----------LTPGFPNPAVADA 879
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
Y P V L+ L ++ C ++F W KTDE + P
Sbjct: 880 YLKP--------VVDDSRGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFP 923
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPETLEGKILAVDISIWLNQALRGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T RR T D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVRRRQRKDLATSDSK 103
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 914 RRDADEVTQTMIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFG 973
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E + G R LI +A LLGSDY++G+ G+GP +A +
Sbjct: 974 GTRVYKNMF-NQAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDYTEGIPGVGPVTALE 1032
Query: 231 IVKSVGD 237
I+ GD
Sbjct: 1033 ILSEFGD 1039
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ + +FV DG PA+K T R
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTISAR 91
>gi|440633177|gb|ELR03096.1| hypothetical protein GMDG_05935 [Geomyces destructans 20631-21]
Length = 1232
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 92 NSGSEVTQDD-----KNLDKMSSLRRNMGSEFS-CMIKEAKALGLSLGVPCLEGVEEAEA 145
N +V Q+D K L R E S M+ E +AL G+P + EAEA
Sbjct: 847 NKAPQVNQEDYERELKQLRNQQKKDRRDADEVSHIMVTECQALLRLFGLPYITAPMEAEA 906
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSL 205
QCA L L DG + DSD+FLFG VY++++ + +V CY D+E++L R+ L
Sbjct: 907 QCAELVTLGLVDGIITDDSDVFLFGGTRVYKNMFNSNK-FVECYLASDLEKELSLPRDKL 965
Query: 206 ITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF 265
I A LLGSDY++G+ G+GP +A +I+ +S+GL K W +
Sbjct: 966 IEFAHLLGSDYTEGLPGIGPVTALEIISEF--------PSSDGLQEFK--------DWWY 1009
Query: 266 KCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYS---------ADSEAVHRV 316
+ NQ + S +R+ SQ + P S AD ++
Sbjct: 1010 DVQH-----NQRPKEADSTSSFRRKFRKSQASKLFLPPAFPSKAVTEAYLHADVDSTPDP 1064
Query: 317 LAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRAN 364
+ L W PE TDE ++P I + + R +AN
Sbjct: 1065 FQWGVPDLDNLRSFLMATIGWTPECTDEVLVPVIQDMNRREAEGTQAN 1112
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTQLWSVLHPCARPTKLEALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSG 94
R+ L+ +FV DG P +K T R+R G
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQTILGRKRWREG 97
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 140/301 (46%), Gaps = 33/301 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----NKSYRPQTD---KLF 53
MGVK L ++ E K + + L K + ID WI Q + SY +
Sbjct: 1 MGVK-LKELFEPSK--IKMGELSGKLIAIDAFNWIFQFLTTIRLADGSYLTDSKGKVTTH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSS 109
L GLF+R +++ +FV DG+ P K T + R + E + +N +K
Sbjct: 58 LNGLFYRSVSMLENRIKPVFVFDGAAPKFKKETLKEREKTKEEAIEKMQNASTAEEKAMY 117
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+RR + +I +K L LG+P ++ E EAQ A LN++ S D D LF
Sbjct: 118 MRR-LSRIDDYIIDSSKELLSYLGIPYVQAPAEGEAQAAQLNMQGKVFAAASQDYDTLLF 176
Query: 170 GARTVYRDIWLGERGYV--------VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQ 218
GA+ V R++ + + + V E+ + +LG R LITL+L +G+DY++
Sbjct: 177 GAKKVVRNLNITNKRKISGKGITTSVLPELINANPNLARLGITREQLITLSLFVGTDYNK 236
Query: 219 GVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI 278
GV G+GP+ A +IVK + S+ R+ S KE + + + K +N+++
Sbjct: 237 GVDGIGPKKALKIVKEKSREEIFA-------SYDFRSDYSIKEIYDYFISPKIIEVNEDL 289
Query: 279 N 279
N
Sbjct: 290 N 290
>gi|345571348|gb|EGX54162.1| hypothetical protein AOL_s00004g195 [Arthrobotrys oligospora ATCC
24927]
Length = 1248
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSD 163
D+ RR+ MI E + L G+P + EAEAQCA L+NL L DG + D
Sbjct: 854 DQQKKDRRDADEVTKIMITECQQLLQMFGIPYITAPMEAEAQCAELVNL-GLVDGIVTDD 912
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223
SDIFLFG VY++++ + YV CY D+E + R +I LA LLGSDY++G+ G+
Sbjct: 913 SDIFLFGGTRVYKNMF-NQAKYVECYLASDLENEYSLDRKKMIRLAHLLGSDYTEGLVGV 971
Query: 224 GPESACQIVKSVG 236
GP +A +++ + G
Sbjct: 972 GPVTALEVLANFG 984
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ + + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPVARPVKLETLAQKRLAIDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RIVKLLFHGIRPVFVFDGGAPLLKRQTIANR 91
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 129/272 (47%), Gaps = 34/272 (12%)
Query: 1 MGVKNLWDILES-CKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL----- 52
MGV L +++ S CKKTL L L NK V +D + Q + RP D
Sbjct: 1 MGVTALRELIPSKCKKTLELKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTS 60
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKN 103
L GLF+R ++ + +V DG+ P +K RR E + D +
Sbjct: 61 HLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYEEAVRRGDVEE 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
K + + + E M++EAK L ++GVP ++ E EAQ A + + S D
Sbjct: 121 ARKYAQMSAKLTKE---MVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQD 177
Query: 164 SDIFLFGARTVYRDIWLGER------GYVVCYEMDDIERK-----LGFGRNSLITLALLL 212
D LFG+ + R++ + R V + ++I K LG R L+ +A+L+
Sbjct: 178 YDSLLFGSPRLVRNLAVSGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLI 237
Query: 213 GSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 244
G+DY+ GV+G+GP++A + VKS GD L+R+
Sbjct: 238 GTDYTPGVKGVGPKTALRYVKSYGD---LERV 266
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAEAQCA L L +G + DSD+FLFGA VYR+++ + V C+
Sbjct: 960 FGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYRNMF-NQSKTVECFLA 1018
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDN 238
D++R+LG R +LI+LA LLGSDY++G+ G+GP A +I+K G+N
Sbjct: 1019 ADLDRELGLDRETLISLAYLLGSDYTEGLPGVGPVVAMEIMKEFPGEN 1066
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 24/118 (20%)
Query: 1 MGVKNLWDILESCKKTLP-------------------LHHLQNKRVCIDLSCWIVQLQNV 41
MGVK LW +L + +P L L+ K + ID S W+ Q Q
Sbjct: 1 MGVKQLWTLLSPAGRPVPYVICIIVITTGQLTNAICSLETLEGKVLAIDSSIWLYQFQAT 60
Query: 42 --NKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
+K R + L G R L+ +FV DG P +K ST R++ SG+
Sbjct: 61 MRDKEGRALVNAHIL-GFLRRTSKLLFHGIKPVFVFDGGAPVLKRSTIAERKKRKSGA 117
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 866 RRDADEVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLFG 925
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++L R+ LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 926 GTRVYKNMFNSNK-FVECYISKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVE 984
Query: 231 IV 232
I+
Sbjct: 985 IL 986
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRAT 87
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 897 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFG 956
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++L R+ LI +A LLGSDY++G+ G+GP +A +
Sbjct: 957 GTRVYKNMFNSNK-FVECYLGSDLEKELSLSRDQLIAIAQLLGSDYTEGLPGVGPVTAVE 1015
Query: 231 IVKSV--GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQ 288
I+ D + R + + R K + + K ++ T L
Sbjct: 1016 ILSEFPGKDGLAKFRDWWQEVQMNSRPKEADATNPFRRKFRKSQA---------TKLFLP 1066
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTD 343
P V DAY P+ S+ + FQ L Q W E+TD
Sbjct: 1067 TGFPNPAVTDAYLRPEVDSSPEQ----------FQWGVPDLEGLRQFLMATIGWSKERTD 1116
Query: 344 EYILPKIAERDLRRFANLRAN 364
E ++P I + + R +AN
Sbjct: 1117 EVLVPVIRDMNKRDVEGTQAN 1137
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLWFGIKPVFVFDGGAPVLKRQT 87
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 116/253 (45%), Gaps = 32/253 (12%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 782 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 841
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 842 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 900
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-----FKC-NNKEESLNQEINVNGTD 284
I+ D L+ ++ WS +K ++ E ++ N T
Sbjct: 901 ILTEFSD---LEEF---------------RDWWSQVQLGYKIPDDPHEGFRKKFKKNVTK 942
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 344
L P V AY P+ S S + V + + V W PE+TDE
Sbjct: 943 LFLPPGFPNKAVEKAYLEPEVDSDPSGFIWGVPDLDAVRQFLMATVG-----WSPERTDE 997
Query: 345 YILPKIAERDLRR 357
++P I RD+ R
Sbjct: 998 VLVPVI--RDVNR 1008
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|334346854|ref|XP_001376389.2| PREDICTED: hypothetical protein LOC100025456 [Monodelphis domestica]
Length = 1410
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 132/287 (45%), Gaps = 49/287 (17%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 922 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFS 981
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ +V Y+ D +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 982 KDK-FVEYYQYVDFHNQLGLDRSKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 1031
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W+ E ++I N D ++++ Q+ +
Sbjct: 1032 LNEFPGHGLEPLLKF----SEWWN------EAQKIKKIRPNPHDTKVKKKLRQLQLSPGF 1081
Query: 301 SNPKCYSA-------DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI--- 350
NP A DS+ L ++ + C ++F W KTDE +LP +
Sbjct: 1082 PNPAVAEAYLKPVVDDSKGAFLWGKPDL---EKIREFCQRYFGWNRTKTDESLLPVLKQL 1138
Query: 351 -AERDLRRFANLRANTLALGVDLPLQKVPVKCP---ITGIIKSRKLQ 393
A++ L + L L + C ITG+I S++ Q
Sbjct: 1139 NAQQQLSKLMQL------------LLSASIACNWLVITGLIPSKRSQ 1173
>gi|328715848|ref|XP_001946726.2| PREDICTED: hypothetical protein LOC100169397 [Acyrthosiphon pisum]
Length = 951
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 119/257 (46%), Gaps = 30/257 (11%)
Query: 107 MSSLRRN---MGSEFSCMI-KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
++SL+R M S + I E K L G+P + EAEAQCA L +G +
Sbjct: 645 LASLQRKSDRMASSVTQKITSEIKGLLKLFGIPYITAPMEAEAQCAFLEKIGRTEGTVTD 704
Query: 163 DSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
DSD++LFGA VY+D + ++ YV ++ DI+++ RNS I LA L+GSDY+ G+ G
Sbjct: 705 DSDVWLFGANVVYKDFFDNQK-YVKQFKSIDIKQQFALSRNSFIQLAFLVGSDYTNGIDG 763
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGW---SFKCNNKEESLNQEIN 279
+GP SA +I+ S ++ E L +K NSK E + F K +
Sbjct: 764 IGPVSAIEIL-SFFESKTKNMNIEEKLLKIKEIANSKAEVYCDIPFMKKLKSTKI----- 817
Query: 280 VNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 339
G D P VI+AY +P ++ L Q + Q F W
Sbjct: 818 --GNDF------PNKAVINAYLHPIVNESNESFNWGTL-----QVDSIIQFAQTNFDWDV 864
Query: 340 EKTDEYILP---KIAER 353
KT + P K+AER
Sbjct: 865 SKTKSKLAPVLKKVAER 881
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LES K +P+ L+NK + ID+S W+ Q ++ V +S T L +FH
Sbjct: 1 MGVQGLWKLLESAGKPIPVEKLENKVLSIDVSIWMYQIIKGVQESDHGATTNRHLIVMFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ IFV DG +P +K T +R
Sbjct: 61 RICKLLFYGIKPIFVFDGGVPELKKITIAQR 91
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 125/255 (49%), Gaps = 15/255 (5%)
Query: 1 MGVKN-LWDILESCKKTLP-LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLF 58
MGV W++++ + + L LQ+KR+ IDLS WIVQ + V K + K LR LF
Sbjct: 1 MGVGGGFWELIKPLRHSSEDLSTLQDKRLAIDLSHWIVQQEAVLKD---RARKPHLRLLF 57
Query: 59 HRLRAL-IALNCGL--IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG 115
R+ L +L G +FV DG P +KL R + S + N R +
Sbjct: 58 FRVVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRFSGIPAAQLNGGDNHRNRAFLE 117
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
+ C+ + LGL L VP L EAEA CA L + D C + DSD FL GAR V
Sbjct: 118 NVEECV----ELLGL-LNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLHGARCVI 172
Query: 176 RDIWLG-ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
+ + ++ V Y DI L R LI LALL+G DY+ +G+ G+G +A ++V+
Sbjct: 173 QTLQADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVGYSNAMRLVQ 232
Query: 234 SVGDNVVLQRIASEG 248
+ +L + G
Sbjct: 233 HFSKDEILDNLRKWG 247
>gi|344244135|gb|EGW00239.1| DNA repair protein complementing XP-G cells-like [Cricetulus
griseus]
Length = 1028
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 133/288 (46%), Gaps = 43/288 (14%)
Query: 101 DKNLDKMSSLRRNMGSEFSC------------------MIKEAKALGLSLGVPCLEGVEE 142
D NL+++ SL N+ +E + M E++ L G+P ++ E
Sbjct: 577 DINLEELDSLESNLLAEQNSLEAQKQQQERIAASVTGQMFLESQELLRLFGIPYIQAPME 636
Query: 143 AEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGR 202
AEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D +LG R
Sbjct: 637 AEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVDFHNQLGLDR 695
Query: 203 NSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG 262
N LI LA LLGSDY++G+ +G +A +I L GL + + E
Sbjct: 696 NKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGRGLDPLLKF----SEW 742
Query: 263 WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEAVHRVLAQHL 321
W E ++++ N D ++++ Q+ + NP A V L
Sbjct: 743 W------HEAQTSKKVAANPHDTKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFL 796
Query: 322 FQHA---RLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTL 366
+ ++ + C ++F W KTDE + P + + ++++ LR ++
Sbjct: 797 WGKPDVDKIREFCQRYFGWNKTKTDESLFPVLKQLNVQQ-TQLRIDSF 843
>gi|170172544|ref|NP_035859.2| DNA repair protein complementing XP-G cells homolog [Mus musculus]
Length = 1170
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|74215723|dbj|BAE23409.1| unnamed protein product [Mus musculus]
Length = 1166
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|351703064|gb|EHB05983.1| DNA repair protein complementing XP-G cells [Heterocephalus glaber]
Length = 1026
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 603 MFLESQELLRLFGVPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFN 662
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 663 KDK-FVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 712
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W +E N+++ N D ++++ Q+ +
Sbjct: 713 LNEFPGRGLDPLLKF----SEWW------QEAQKNRKVRPNPNDTKVKKQLRKLQLTPGF 762
Query: 301 SNPKCYSA-------DSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 348
NP A DS+ + + R L C ++F W KTDE + P
Sbjct: 763 PNPAVAEAYLRPVVDDSKGAF-LWGKPDLDKIREYPWCLQTFCQRYFGWSRTKTDESLSP 821
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLEGSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKR 91
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 29/293 (9%)
Query: 81 AIKLSTYRRRLNSGSEVTQD-DKNLDKMSSL----RRNMGSEFSCMIKEAKALGLSLGVP 135
A + + + + LN+ + V+ D DK L ++ + RR+ MI E + L G+P
Sbjct: 927 ASEHARFAQELNANTAVSVDFDKELKQLRAQQKKDRRDADEVTQTMITECQHLLTLFGLP 986
Query: 136 CLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIE 195
+ EAEAQCA L L DG + DSD FLFG VY++++ + +V CY D+
Sbjct: 987 YITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK-FVECYLASDLA 1045
Query: 196 RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRA 255
+ R+ LI +A LLGSDY+ G+ G+GP +A +I+ D L K+
Sbjct: 1046 SEFSLTRDKLIAIAQLLGSDYTPGIPGIGPVTALEILSEFPD-----------LEQFKQW 1094
Query: 256 KNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQRETPFSQVIDAYSNPKCYSADSE--- 311
++G K + + N T L P +V DAY +P+ S
Sbjct: 1095 WTGVQDGSIPKAADATSPFRKRFRKNQATKLFLPPTFPDPRVADAYLHPEVDSDPQPFEW 1154
Query: 312 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRAN 364
V + A F +++ W E+TDE ++P I + + R +AN
Sbjct: 1155 GVPDLAALRAFLQSQIG--------WSWERTDEVLVPVIRDMNRREKEGTQAN 1199
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ + +FV DG PA+K T + R
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTIQHR 91
>gi|1209080|gb|AAA91039.1| XPG [Mus musculus]
gi|1209097|gb|AAB17885.1| XPG [Mus musculus]
Length = 1170
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 124/255 (48%), Gaps = 15/255 (5%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 857 RRDADEVTQTMIAECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 916
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E+++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYIASDLEKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 975
Query: 231 IVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
I+ G + ++Q E V+ ++ KE +F ++ +Q T L
Sbjct: 976 ILSEFPGKDGLVQ--FREWWKEVQ-SQTRPKEADAFSPFRRKFRKSQ-----ATKLFLPL 1027
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 349
P V +AY +P S+ + + A L + W E+TDE ++P
Sbjct: 1028 GFPSPAVYEAYLHPMVDSSTEK-----FQWGVPDVAGLREYLMATIGWSKERTDEVLVPV 1082
Query: 350 IAERDLRRFANLRAN 364
I + + R ++N
Sbjct: 1083 IRDMNKREIEGTQSN 1097
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K +T ++R
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQKR 91
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 114/247 (46%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L+ + S V+ N ++ S ++ N T L
Sbjct: 936 ILTEF---PTLEDF-RDWWSQVQMGANLPEDSHSI--------FRKKFKKNVTKLFLPPG 983
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY PK S S + L Q W E+TDE ++P I
Sbjct: 984 FPDKRVDTAYLEPKVDSDPS-----AFQWGVPDLNALRQFLMSTIGWSQERTDEVLVPVI 1038
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1039 --RDMNR 1043
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSR 91
>gi|432119340|gb|ELK38422.1| DNA repair protein complementing XP-G cells [Myotis davidii]
Length = 1164
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 39/228 (17%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 776 MFLESQELLRLFGIPYIEAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 834
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 835 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIATVGCVTAMEI--------- 885
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N++I N D ++++ Q+ +
Sbjct: 886 LNEFPGHGLEPLLKF----SEWW------HEAQKNKKIRPNPYDTKVKKKLRKLQLTPGF 935
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
NP A + V ++F W KTDE + P
Sbjct: 936 PNPAVADAYLKPV-------------------RYFGWNRTKTDESLFP 964
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRPVSPETLEGKILAVDISIWLNQALKGVRDRHGNAIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
RL L+ IFV DG P +K T +R T D K
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQKKDLATSDSK 103
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 33/264 (12%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 863 RRDADEVTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 922
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + YV CY D+E +L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 923 GTRVYKNMFNSNK-YVECYLAKDLETELSLSREQLIALAQLLGSDYTEGLPGVGPVTALE 981
Query: 231 IVKSVGDNVVLQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
I+ +GL+ F ++ + G + + + + T L
Sbjct: 982 ILSEF--------PGRDGLAEFRDWWQDVQNHGRPKEADADSPFRRKFRKAHATKLFLPV 1033
Query: 290 ETPFSQVIDAYSNPKCYS---------ADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPE 340
P V DAY +P+ S D + + R L + + W E
Sbjct: 1034 GFPNPAVFDAYLHPEVDSNTEPFQWGVPDLDGLRRFLMETI--------------GWSQE 1079
Query: 341 KTDEYILPKIAERDLRRFANLRAN 364
+TDE ++P I + + R ++N
Sbjct: 1080 RTDEVLVPVIRDMNKRDVEGTQSN 1103
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW I++ C + L L KR+ ID S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTIVQPCARPTNLSTLNRKRLAIDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWHGVKPVFVFDGGAPALKRAT 87
>gi|74141263|dbj|BAE35937.1| unnamed protein product [Mus musculus]
Length = 898
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 664 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 722
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 723 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 773
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 774 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 823
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 824 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 875
>gi|187954383|gb|AAI41071.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1170
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYP 978
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMISECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 231 IV 232
I+
Sbjct: 936 IL 937
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSR 91
>gi|312377995|gb|EFR24684.1| hypothetical protein AND_10542 [Anopheles darlingi]
Length = 1428
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 109/229 (47%), Gaps = 12/229 (5%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAEAQCA LN L DG + DSDI+LFG + VY++ + ++ V+ + +
Sbjct: 933 FGVPYIVAPMEAEAQCAFLNQIELTDGTITDDSDIWLFGGQKVYKN-FFNQQKLVLEFTI 991
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+ IE+ R LI LALL+GSDY+ G+ G+G +A +I+ S SE +S
Sbjct: 992 EGIEQAFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEILASFPPTPEQPGETSELMSM 1051
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSNPKC-YSA 308
+ + K W N + I + + + P + V++AY P YS
Sbjct: 1052 LSGLR--KFRDWWQHSRNGTATTGTRIALKSKLKNIDIGEGFPNTGVVEAYLKPTVDYSE 1109
Query: 309 DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ A L +AR Q F W KTD+ +LP + D R+
Sbjct: 1110 EEFTWGYPDADRLRDYAR------QKFGWTRSKTDDILLPVLKRLDERK 1152
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL----QNVNKSYRPQTDKLFLRG 56
MGV LW ++E K +PL L+NK + +D+S W+ Q+ Q+ S P L G
Sbjct: 1 MGVLGLWKLIEQSGKPVPLETLENKVLAVDVSIWLHQVIKGFQDSKGSALPNAHVL---G 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS 93
LFHRL L+ IFV DG +P +K T +R S
Sbjct: 58 LFHRLCKLMFYRIKPIFVFDGGVPVLKKQTIAKRNQS 94
>gi|156395298|ref|XP_001637048.1| predicted protein [Nematostella vectensis]
gi|156224157|gb|EDO44985.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats.
Identities = 75/246 (30%), Positives = 111/246 (45%), Gaps = 56/246 (22%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW+ILE KK L L+ KR+C+DLSCWI + N K + K LR LF R
Sbjct: 1 MGVTQLWNILEPVKKEGSLCSLRGKRLCVDLSCWICE-ANGAKGLKTNVLKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L L+FV DG P +K +
Sbjct: 60 IWQLTRCGVKLVFVVDGEPPELK----------------------------------WEA 85
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+IK +A S G ++ DGC ++D D FL+GARTVY+D+ +
Sbjct: 86 IIKRTQARFGSAG-------------------NAVVDGCITNDGDAFLYGARTVYKDLCI 126
Query: 181 -GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ + + + LG R L+ LA+LLG DY QGV G+G E + ++++ +
Sbjct: 127 SAKVCKKIIKIYIKVYKILGLRRTELVALAVLLGCDYLPQGVPGVGKEMSLKLIQELKGV 186
Query: 239 VVLQRI 244
+L+R+
Sbjct: 187 DLLKRL 192
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 867 RRDADEVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFG 926
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++L R+ LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 927 GTRVYKNMFNSNK-FVECYIGKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVE 985
Query: 231 IV 232
I+
Sbjct: 986 IL 987
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRAT 87
>gi|5020|emb|CAA47291.1| excision repair protein [Schizosaccharomyces pombe]
Length = 1113
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 17/260 (6%)
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
K S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD
Sbjct: 742 KKGSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSD 801
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
+FLFG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP
Sbjct: 802 VFLFGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGP 860
Query: 226 ESACQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
A +I+ GD GL K+ G + K N+ + + IN
Sbjct: 861 VLALEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGK 910
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 344
L E P V +AY +P DS+ + L L Q W ++T+E
Sbjct: 911 IILPSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNE 965
Query: 345 YILPKIAERDLRRFANLRAN 364
+LP I + ++F ++N
Sbjct: 966 VLLPVIQDMHKKQFVGTQSN 985
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW+ILE K+ + L L NKR+ ID S WI Q L+ V Q + G F
Sbjct: 1 MGVSGLWNILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P++K T ++R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKR 91
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 781 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 840
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 841 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 899
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ D L+ ++ WS + NK ++ N T
Sbjct: 900 ILTEFSD---LEEF---------------RDWWSQVQLGNKIPDDPHAGFRKKFKKNTTK 941
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 942 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 993
Query: 342 TDEYILPKIAERDLRRFANLRANTLAL 368
TDE ++P I + + R ++N
Sbjct: 994 TDEVLVPVIRDANRREQEGTQSNITGF 1020
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 759 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 818
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 819 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 877
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ G L + + G + N+ + ++ + T L
Sbjct: 878 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 925
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 926 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 980
Query: 351 AERDLRR 357
RD+ R
Sbjct: 981 --RDMNR 985
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW ++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQT 87
>gi|294459945|ref|NP_001170894.1| DNA repair protein complementing XP-G cells [Taeniopygia guttata]
Length = 1176
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 26/242 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCALL+L G + DSD++LFG R VY++ +
Sbjct: 774 MFLESQELLRLFGIPYIEAPTEAEAQCALLDLTDQTSGTITDDSDVWLFGGRHVYKN-FF 832
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ Y+ Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 833 SQNKYIEYYQYVDFQNELGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 883
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL +K A E W+ E N+++ N D ++++ Q+
Sbjct: 884 LNEFPGHGLEPLLKFA-----EWWN------EAQKNKKVMPNPHDTKVKKKLRELQLYSG 932
Query: 300 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDL 355
+ NP A V + + Q+ C F W K D +LP + + +L
Sbjct: 933 FPNPAVAEAYLKPVVDESRGSFTWGKPDVEQIREFCKDHFGWTRTKIDGILLPVMKQLNL 992
Query: 356 RR 357
++
Sbjct: 993 QQ 994
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ L LFH
Sbjct: 1 MGVQGLWKLLECTGRPINPETLEGKILAVDISIWLNQAIKGARDRGGISVRNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKR 91
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 114/254 (44%), Gaps = 18/254 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 805 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 864
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 865 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 923
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ GL + + + G + ++ ++ N L
Sbjct: 924 ILTEF-----------PGLEEFRDWWSKVQMGVTI-SDDTHSKFRKKFKKNAAKLFLPPA 971
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ D A + L Q W PE+TDE ++P I
Sbjct: 972 FPDKRVDIAYLEPEV-DPDPSAFQWGVP----DLEALRQFLMSTVGWSPERTDEVLVPVI 1026
Query: 351 AERDLRRFANLRAN 364
+ + R +AN
Sbjct: 1027 RDVNRRELEGTQAN 1040
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV +LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTDLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 29/262 (11%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ S M +E + L G+P + EAEAQCA L + L DG + D DIFLFG
Sbjct: 770 RRDADDVTSAMNQECQILLKKFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFG 829
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + V CY DIE++L GR+ +I+LA LLGSDY++G+ G+G +A +
Sbjct: 830 GTRVYKNLFNSNKD-VECYLQKDIEQELSLGRDQMISLAQLLGSDYAEGLHGVGSVTAIE 888
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV--------NG 282
++ LQ K W+ L++E +
Sbjct: 889 LLSEFSSPTGLQDF---------------KHWWTSVQGPHPPPLSEETSTFRKKFRRAQA 933
Query: 283 TDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKT 342
+ L P V +AY P S+ E R L L Q W E+T
Sbjct: 934 SKLFLPAGFPSPAVAEAYYKPHVDSSKEE--FRWGVPDL---EGLRGFLMQTIGWSQERT 988
Query: 343 DEYILPKIAERDLRRFANLRAN 364
DE ++P I + + R ++N
Sbjct: 989 DEVLVPVIRDMNRRELEGTQSN 1010
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 817 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 876
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +
Sbjct: 877 GTRVYKNMF-NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALE 935
Query: 231 IV 232
I+
Sbjct: 936 IL 937
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSR 91
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 36/263 (13%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 781 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 840
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R L++ + LLGSDY++G+ G+GP +A +
Sbjct: 841 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLVSFSHLLGSDYTEGIPGIGPVTALE 899
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ D L+ K+ WS + NK ++ N T
Sbjct: 900 ILTEFSD---LEEF---------------KDWWSQVQLGNKIPDDPHAGFRKKFKKNITK 941
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 942 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 993
Query: 342 TDEYILPKIAERDLRRFANLRAN 364
TDE ++P I + + R ++N
Sbjct: 994 TDEVLVPVIRDANRREQEGTQSN 1016
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARLIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ + MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 755 RRDADEVTTIMINECQQLLTLFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFG 814
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 815 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALE 873
Query: 231 IV 232
I+
Sbjct: 874 IL 875
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIRPVFVFDGGAPVMKRQT 87
>gi|408360334|sp|P35689.4|ERCC5_MOUSE RecName: Full=DNA repair protein complementing XP-G cells homolog;
AltName: Full=DNA excision repair protein ERCC-5;
AltName: Full=Xeroderma pigmentosum group
G-complementing protein homolog
Length = 1170
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYP 978
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|425769594|gb|EKV08085.1| DNA excision repair protein Rad2 [Penicillium digitatum Pd1]
gi|425771041|gb|EKV09495.1| DNA excision repair protein Rad2 [Penicillium digitatum PHI26]
Length = 1130
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ + MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 802 RRDADEVTTIMINECQQLLALFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFG 861
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 862 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALE 920
Query: 231 IV 232
I+
Sbjct: 921 IL 922
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIRPVFVFDGGAPVMKRQT 87
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 791 RRDADEVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 850
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 851 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 909
Query: 231 IV 232
I+
Sbjct: 910 IL 911
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|307176270|gb|EFN65901.1| DNA-repair protein complementing XP-G cells [Camponotus floridanus]
Length = 1193
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 183
EA+ L G+P + EAEAQCA L L +G + DSDI+LFG + VY++ + R
Sbjct: 825 EAQELLRLFGIPYIVAPMEAEAQCAYLEQIELTNGTITDDSDIWLFGGQYVYKNFFNNNR 884
Query: 184 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV---GDNVV 240
V+ + DI+ RN LI LALL+GSDY+ GV G+GP +A +I+ + GDN++
Sbjct: 885 -RVLQFHAYDIQHHFKLSRNQLIQLALLVGSDYTTGVAGIGPVTALEILAAFPAEGDNIL 943
Query: 241 LQRIASEGL----SFVKRAKNSKKEGWSFKCNN 269
GL S++K K S K G K N
Sbjct: 944 ------HGLYKFCSWIKEGKPSGKMGLRNKLRN 970
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE+ K +PL L+ K + ID+S WI Q LQ + L GLF
Sbjct: 1 MGVHGLWKLLEASGKPVPLESLEGKVLAIDISIWIYQVLQGYQDRHGTPKPNAHLLGLFT 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K +T R
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKNTIALR 91
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 20/256 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 931 RRDADEVTQTMISECQQLLTLFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 989
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + +V CY D+ + R LI +A LLGSDY++G+ G+GP +A
Sbjct: 990 GGTRVYKNMFNAAK-FVECYLSSDLTSEFSLTRQKLIDIAQLLGSDYTEGLPGIGPVTAL 1048
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 288
+I+ D L+ ++ + + G K ++ + S + N T L
Sbjct: 1049 EILSEFQD-----------LTSFRKWWDGVQNGTIKKSDDAQSSFRKRFRKNQATKLFLP 1097
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P +V +AY +P+ S+ + A L + W E+TDE ++P
Sbjct: 1098 TSFPDPRVAEAYLHPEVDSS-----PEPFQWGVPDLAALRAYLSSQIGWSTERTDEVLVP 1152
Query: 349 KIAERDLRRFANLRAN 364
I + + R +AN
Sbjct: 1153 VIRDMNRREKEGTQAN 1168
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD 101
R+ L+ + +FV DG PA+K T R R S E +DD
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTIRHR-KSRREGRRDD 101
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 789 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 848
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 907
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ G L + + G + N+ + ++ + T L
Sbjct: 908 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 955
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 956 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 1010
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1011 --RDMNR 1015
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW ++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQT 87
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 789 RRDADEVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 848
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 231 IV 232
I+
Sbjct: 908 IL 909
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQT 87
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 575 RRDADEVSQVMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 634
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 635 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 693
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ G L + + G + N+ + ++ + T L
Sbjct: 694 ILTEFG-----------TLEDFRDWWTQVQTGLNM-GNDSHATFYKKFKKHATKIFLPPS 741
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 742 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 796
Query: 351 AERDLRR 357
RD+ R
Sbjct: 797 --RDMNR 801
>gi|19112887|ref|NP_596095.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe 972h-]
gi|13432230|sp|P28706.2|RAD13_SCHPO RecName: Full=DNA repair protein rad13
gi|3130034|emb|CAA19011.1| DNA repair nuclease Rad13 [Schizosaccharomyces pombe]
Length = 1112
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD+FL
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 169 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 228
FG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP A
Sbjct: 804 FGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 229 CQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 287
+I+ GD GL K+ G + K N+ + + IN L
Sbjct: 863 LEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKIIL 912
Query: 288 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 347
E P V +AY +P DS+ + L L Q W ++T+E +L
Sbjct: 913 PSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNEVLL 967
Query: 348 PKIAERDLRRFANLRAN 364
P I + ++F ++N
Sbjct: 968 PVIQDMHKKQFVGTQSN 984
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LWDILE K+ + L L NKR+ ID S WI Q L+ V Q + G F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P++K T ++R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKR 91
>gi|83766314|dbj|BAE56457.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1066
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P SQV AY P+ S S V H ++ + + W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIG-----WSQERTDEVLVPVI 1017
Query: 351 AERDLRRFANLRANTLAL 368
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 22/247 (8%)
Query: 18 PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDG 77
PL L NK V IDLS W+ + NV + + +LR LF R L+ +FV +G
Sbjct: 5 PLFELSNKVVAIDLSGWVCESLNVVDYFV--HPRFYLRNLFFRTCYLLQTGITPVFVLEG 62
Query: 78 SIPAIKLSTYRRR-------------LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKE 124
+ P +K +R N + +K + + F ++K+
Sbjct: 63 TAPPLKYGVIVKRNQMQFRGARPKKIANCDKATVSSTQTTEKPAKPTEQKRNRFHHVLKQ 122
Query: 125 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG 184
+ L ++G+ C++ EAEA CA LN ++L G S DSD F +GA V+R+ + G
Sbjct: 123 CEELLSAMGLVCVQAPGEAEALCAYLNRDNLIYGVISQDSDCFAYGAVRVFRNFCASQNG 182
Query: 185 YVVCYEMDDIER----KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNV 239
V E+ D+ R L G+ ++ +ALL G DY GV G+G E + + +
Sbjct: 183 GSV--EIYDLTRVNASVLQLGQEKIVAMALLSGCDYCPAGVMGVGRELVTRFISCYENGE 240
Query: 240 VLQRIAS 246
+L +I S
Sbjct: 241 ILPKIRS 247
>gi|148664472|gb|EDK96888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 5 [Mus musculus]
Length = 1171
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 25/233 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV----CAQFFQWPPEKTDEYILP 348
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIRDTFCQRYFGWNRMKTDESLYP 979
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|403177167|ref|XP_003335732.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172758|gb|EFP91313.2| hypothetical protein PGTG_17170 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1403
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG VY++++ + +V CY M
Sbjct: 967 FGIPFVVSPMEAEAQCAELLKLGLVDGIITDDSDVFLFGGHRVYKNLF-NQNKFVECYLM 1025
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+D++++LG + LI LA LLGSDY+ G+ G+GP +A +I+
Sbjct: 1026 NDLDQELGLDQQKLIQLAFLLGSDYTVGLNGVGPVTAMEIL 1066
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 6 LWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR----GLFHRL 61
LW ++ + + L + +K++ ID S W+ Q Q K+ R + K + G R+
Sbjct: 82 LWTLISPVARPVNLETMGSKKLAIDSSIWLYQFQ---KAMRDREGKGIVNAHILGFLRRI 138
Query: 62 RALIALNCGLIFVSDGSIPAIKLSTYRRR 90
L+ +FV DG +P +K T R
Sbjct: 139 SKLLYYGIKPVFVFDGGVPTLKKQTINER 167
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P +E EAEAQCA L L DG + DSDIF+FG + VY++ E+ +V Y
Sbjct: 3 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNF-FDEQKFVEAYYAR 61
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFV 252
DIER+LG ++ L+ LA+LLG DY+ GVRG+G + +++++ A++G+ V
Sbjct: 62 DIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAF-------PPAADGVEGV 114
Query: 253 KRAKNSKKEGWSFKCNN--KEESLNQEINVNGTDHSLQR------ETPFSQVIDAYSNPK 304
S+ W N+ +++ E+ +G S + + P +I AY P
Sbjct: 115 -HGGLSRFRDWMDGINDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLKP- 172
Query: 305 CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
+ D+ A+ L + CA W E+T + P
Sbjct: 173 --AVDTSGTRFTWARPDLDA--LQRFCADSLGWEREETARVVGP 212
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 112/247 (45%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD+FLFG
Sbjct: 791 RRDADEVSQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFG 850
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 851 GTRVYKNMF-NQSKFVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALE 909
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ G E + + + G N+ + ++ + T L
Sbjct: 910 ILTEFG-------TLEEFRDWWTQVQTGLNMG-----NDSHATFYKKFKKHATKIFLPPS 957
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P +V AY P+ S S V H L W E+TDE ++P I
Sbjct: 958 FPDPRVDAAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMSTIGWSQERTDEVLVPVI 1012
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1013 --RDMNR 1017
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWTVVHPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIQPVFVFDGGAPVLKRQT 87
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 30/263 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV +L D+++ K+ L L+ KRV ID + Q + +P L
Sbjct: 1 MGV-DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIR--QPDGTPLMDSQGRVT 57
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMS 108
L GLF+R ++ I+V DG P K RR + E + K+ K+
Sbjct: 58 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIE 117
Query: 109 SLRRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
LR+ + + M++E+K L ++G+P ++ E EA+ A LN L S D D
Sbjct: 118 ELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYD 177
Query: 166 IFLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGS 214
LFGA+ + R++ + G+R YV E + + +KLG R LI + +L+G+
Sbjct: 178 AILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGT 237
Query: 215 DYS-QGVRGLGPESACQIVKSVG 236
DY+ G+RG+GPE A +I+K G
Sbjct: 238 DYNPDGIRGIGPERALKIIKKYG 260
>gi|391869945|gb|EIT79134.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 1066
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P SQV AY P+ S S V H L W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLH-----GLRDFLMATIGWSQERTDEVLVPVI 1017
Query: 351 AERDLRRFANLRANTLAL 368
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|317140876|ref|XP_001818459.2| single-stranded DNA endonuclease [Aspergillus oryzae RIB40]
Length = 1135
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + L + + G + + + + ++ + L
Sbjct: 915 ILTEFSN-----------LEEFRDWWTQVQMGMNL-SDGEHAAFYKKFRKQASKIFLSPS 962
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P SQV AY P+ S S V H ++ + + W E+TDE ++P I
Sbjct: 963 FPNSQVDVAYLEPEVDSDPSPFQWGVPDLHGLRNFLMATIG-----WSQERTDEVLVPVI 1017
Query: 351 AERDLRRFANLRANTLAL 368
+ + R ++N A
Sbjct: 1018 RDMNRREQEGTQSNITAF 1035
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWTVLQPCARPIKVETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 798 RRDADEVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 857
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + YV CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 858 GTRVYKNMF-NQSKYVECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 916
Query: 231 IV 232
I+
Sbjct: 917 IL 918
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW I++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVQGLWTIVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQT 87
>gi|358387657|gb|EHK25251.1| hypothetical protein TRIVIDRAFT_208179 [Trichoderma virens Gv29-8]
Length = 1196
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 13/254 (5%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 889 RRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 948
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+++++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 949 GTRVYKNMFNSNK-FVECYVGADLDKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 1007
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L++ E V+ K+ S K T L
Sbjct: 1008 ILSEFPGKDGLEKF-REWWKEVQSQTRPKEADASSSFRRKFR------KAQATKLFLPLG 1060
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P V +AY +P S+ + + A L + W E+TDE ++P I
Sbjct: 1061 FPSPAVFEAYLHPMVDSSTEQ-----FQWGVPDVAGLREYLMATIGWSKERTDEVLVPVI 1115
Query: 351 AERDLRRFANLRAN 364
+ + R ++N
Sbjct: 1116 RDMNKREIEGTQSN 1129
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K +T ++R
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQKR 91
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG VY++++
Sbjct: 777 IMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMF 836
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ +V CY +D+E++ RN LI A LLGSDY++G+ G+GP SA +I+
Sbjct: 837 -NQAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEIL 888
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTIMSR 91
>gi|358390983|gb|EHK40388.1| hypothetical protein TRIATDRAFT_41742 [Trichoderma atroviride IMI
206040]
Length = 1172
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E +AL G+P + EAEAQCA L ++ DG + DSD FLFG
Sbjct: 867 RRDADEVTQTMITECQALLRLFGIPYITAPMEAEAQCAELVRLNMVDGIVTDDSDTFLFG 926
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D++++L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 927 GTRVYKNMFNSNK-FVECYVGADLDKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVE 985
Query: 231 IV 232
I+
Sbjct: 986 IL 987
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVIQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K +T ++R
Sbjct: 61 RICKLLWFGILPVFVFDGGAPALKRATIQKR 91
>gi|296412156|ref|XP_002835792.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629585|emb|CAZ79949.1| unnamed protein product [Tuber melanosporum]
Length = 914
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 16/243 (6%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M++E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 545 RRDADEVTQAMVQECQQLLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 604
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI +A LLGSDY++GV +GP +A +
Sbjct: 605 GTRVYKNMF-NQAKFVECYLAGDLEKEYALDRTGLIRIAHLLGSDYTEGVPTVGPVTAME 663
Query: 231 IVKSVGDNVVLQRIASE-GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
+ L AS+ GL+ K + + G ++ + ++ N T L
Sbjct: 664 L---------LAEFASDNGLTEFKEWWTAVQTGLRKPADDDDNPFRKKFRKNATKVFLPT 714
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPK 349
P +V +AY +P+ S+ + L + W E+TDE ++P
Sbjct: 715 NFPDPRVDEAYMHPEVDHDPSQ-----FEWGMPDLDGLRRFLMATVGWSQERTDEVLVPV 769
Query: 350 IAE 352
I +
Sbjct: 770 IKD 772
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M+ E + L G+P + EAEAQCA L L DG + DSD FLFG VY++++
Sbjct: 892 VMVAECQQLLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYKNMF 951
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
G + +V CY D+E L GR LI LA LLGSDY++G+ G+GP +A +I+
Sbjct: 952 NGNK-FVECYLSSDLEGDLSLGRPQLIALAQLLGSDYTEGLPGIGPVTAVEIL 1003
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRSSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K +T
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPILKRAT 87
>gi|238484915|ref|XP_002373696.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
gi|220701746|gb|EED58084.1| DNA excision repair protein Rad2 [Aspergillus flavus NRRL3357]
Length = 1135
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 796 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVALGLVDGIITDDSDIFLFG 855
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 856 GTRVYKNMF-NQGKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALE 914
Query: 231 IV 232
I+
Sbjct: 915 IL 916
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWTVLQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|198423155|ref|XP_002121987.1| PREDICTED: similar to Excision repair cross-complementing rodent
repair deficiency, complementation group 5 [Ciona
intestinalis]
Length = 948
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 25/231 (10%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + +EAEAQCA L++ L G + DSD++LFG + VY+D++ +R CY +
Sbjct: 634 FGIPFVLSPQEAEAQCAFLDMNDLTMGTITEDSDVWLFGGKNVYKDMFDRKRD-PTCYSL 692
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGL-S 250
DI+ +LG R+ I +AL GSDY++G+ G+GP A +I+K EG+ S
Sbjct: 693 LDIQAELGLLRSHFINIALCSGSDYTEGLEGVGPVRALEIMK---------EFPGEGMES 743
Query: 251 FVKRAKNSKKEGW-SFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD 309
VK K+ W K + +I ++ + P V++AY P+ +
Sbjct: 744 LVKF-----KQWWDDAHAQVKPPTSEAKIKTELRRLNVPQNFPSKLVVEAYLKPRVNESK 798
Query: 310 SEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAERDLRR 357
+ V + + + + W K DE +LP K AER R+
Sbjct: 799 DKFVW-----GMPDLSGIRDYLTERLHWTRNKIDEELLPVLKKSAERATRK 844
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV LW +LE + + LH L+ K + +D+S W L K R Q+ + L LFH
Sbjct: 1 MGVTGLWKLLEGNGRQVELHTLEGKILAVDISIW---LNMAIKGMRGQSANNAHLITLFH 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T + R
Sbjct: 58 RICKLLYFGIKPVFVFDGGAPALKQRTLKER 88
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 789 RRDADEVTQVMITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 848
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 849 GTRVYKNMF-NQGKFVECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALE 907
Query: 231 IV 232
I+
Sbjct: 908 IL 909
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPVLKRQT 87
>gi|195030390|ref|XP_001988051.1| GH10954 [Drosophila grimshawi]
gi|193904051|gb|EDW02918.1| GH10954 [Drosophila grimshawi]
Length = 1183
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 130/282 (46%), Gaps = 50/282 (17%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN + +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 802 FGIPYIVAPMEAEAQCAFLNAVEITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 860
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV---------------- 235
+ IE+ R+ LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 861 EQIEQTFNCNRSKLIQLACLVGSDYTTGIHGIGAVTALEILASFTTSKLDSATTSLDTAS 920
Query: 236 -GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCN-------NKEESLNQEI-NVNGTDHS 286
G + Q + S + F ++ W + N SL +++ N+N
Sbjct: 921 NGSAITNQSVLSTLVKF--------RDWWQSQHNANIPVGSTARISLRKKLKNIN----- 967
Query: 287 LQRETPFSQVIDAYSNPKC-YSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEY 345
L P S V++AY PK + D+ + + + + AR +FF W KTD+
Sbjct: 968 LHEGFPSSSVVEAYLTPKVDETRDAFSWGSPDVESIREFAR------KFFGWTTSKTDDI 1021
Query: 346 ILP---KIAERDLR-RFANLRANTLALGVDLPLQKVPVKCPI 383
++P KI E+ ++ N AL V P+ V+ I
Sbjct: 1022 LMPVMKKINEKKIQGSIRNYFTAKSALRVQQPMVSKRVQTAI 1063
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ S + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD 100
RL L+ +F+ DGS+P +K T RR S+++ +
Sbjct: 61 RLCKLLYYRVRPVFIFDGSVPQLKRDTIARRQQQRSKLSNE 101
>gi|307206657|gb|EFN84629.1| DNA-repair protein complementing XP-G cells [Harpegnathos saltator]
Length = 1139
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 105 DKMSSLRRNMG------SEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D+ L RN+G + S I+ EA+ L G+P + EAEAQCA L L D
Sbjct: 741 DEQEELTRNIGKLERQATNISEQIRIEAQELLRLFGIPYVVAPMEAEAQCAYLEQIKLTD 800
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
G + DSDI+LFG R VY++ + + V + DI+ RN LI LALL+GSDY+
Sbjct: 801 GTITDDSDIWLFGGRCVYKNFFNNSK-RVQQFRACDIQHHFKLTRNQLIQLALLVGSDYT 859
Query: 218 QGVRGLGPESACQIVKSV---GDNVV 240
GV G+GP +A +I+ + GDNV+
Sbjct: 860 TGVAGIGPVTALEILAAFPAEGDNVL 885
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL----QNVNKSYRPQTDKLFLRG 56
MGV LW +L++ K + L +L+ K + ID+S WI Q+ QN + + +P L G
Sbjct: 1 MGVYGLWRLLDASGKPVVLENLEGKVLAIDVSIWIYQVLQGYQNQHGASKPNA---HLLG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
L+ R+ L+ +FV DG +P +K +T R
Sbjct: 58 LYTRICKLLYYRIKPVFVFDGGVPMLKKNTIASR 91
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 816 RRDADEVSQIMISECQQLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFG 875
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 876 GTRVYKNMF-NQSKFVECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGVGPVTALE 934
Query: 231 IV 232
I+
Sbjct: 935 IL 936
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LWD+++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHGLWDVVQPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQT 87
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 106/249 (42%), Gaps = 28/249 (11%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++++ ++R + M ++ + L G+P + EAEAQCA L L G + DS
Sbjct: 673 NEINRIQRQTSEITASMAEDCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDDS 732
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
DIFLFG VY++++ + Y IE L R LI A+L GSDY+ G+ +G
Sbjct: 733 DIFLFGGNVVYKNLF-SQDHQCEMYAAKTIESNLKLSREDLIGFAMLTGSDYTNGIENVG 791
Query: 225 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
P AC+I+ G S +K KK WS N I
Sbjct: 792 PVMACEIIAEF----------RSGKSVLKTLTEFKK-WWSLAQRGAALPKNS-IRTRFIK 839
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPP 339
L P V AY +P V RV + F +R L A+ F WP
Sbjct: 840 LVLDDRFPSEAVHSAYCHP--------TVERV--KEKFSWSRPNLDLLRGFTAKKFNWPQ 889
Query: 340 EKTDEYILP 348
+KTD Y+LP
Sbjct: 890 DKTDGYLLP 898
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ----TDKLFLRG 56
MGV LW +L+ K + L L+ K + ID+S W+ QL K YR D L G
Sbjct: 1 MGVVGLWQLLDPTGKPIRLETLEGKVLAIDISIWLNQLI---KGYRTSGGAGVDNAHLVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEV 97
LF R+ L+ +FV DG PA+K L++ +RR G+E
Sbjct: 58 LFQRVCKLLHYKIKPVFVFDGEAPALKYQTLASRKRRREDGNEA 101
>gi|449272261|gb|EMC82261.1| DNA repair protein complementing XP-G cell [Columba livia]
Length = 1133
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 115/249 (46%), Gaps = 33/249 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P +E EAEAQCA+L+L G + DSD++LFGAR VY++ +
Sbjct: 722 MFLESQELLRLFGIPYIEAPMEAEAQCAVLDLTDQTSGTITDDSDVWLFGARHVYKN-FF 780
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ YV Y+ D + +LG R+ LI LA LLGSDY++G+ +G +A +I
Sbjct: 781 SQNKYVEYYQYVDFQNQLGLDRSKLINLAYLLGSDYTEGIPNVGFVTAMEI--------- 831
Query: 241 LQRIASEGLS-FVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L GL +K A E W+ E N+++ N D ++++ Q+
Sbjct: 832 LNEFPGRGLEPLLKFA-----EWWN------EAQKNKKLRPNPHDTKVKKKLRELQLASG 880
Query: 300 YSNPKCYSAD-SEAVHRVLAQHLFQHARLHQV----------CAQFFQWPPEKTDEYILP 348
+ NP A V + + Q+ C F W K DE + P
Sbjct: 881 FPNPAVAEAYLKPVVDESRGSFTWGKPDVEQIREYSLTFCTFCQDHFGWTRTKVDEILSP 940
Query: 349 KIAERDLRR 357
I + +L++
Sbjct: 941 VIKQLNLQQ 949
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ L LFH
Sbjct: 1 MGVQGLWKLLECAGRPINPETLEGKILAVDISIWLNQAIKGARDRGGNSVRSAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGEAPLLKRQTLAKR 91
>gi|158299596|ref|XP_319693.4| AGAP008939-PA [Anopheles gambiae str. PEST]
gi|157013593|gb|EAA14799.5| AGAP008939-PA [Anopheles gambiae str. PEST]
Length = 1256
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 8/226 (3%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAEAQCA LN + DG + DSDI+LFG + VY++ + ++ V+ + +
Sbjct: 901 FGVPFIVAPMEAEAQCAFLNQLDMTDGTITDDSDIWLFGGKKVYKN-FFNQQKLVLEFTI 959
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+ IE+ R LI LALL+GSDY+ G+ G+G +A +I+ S SE +S
Sbjct: 960 EGIEQMFQMDRKKLIQLALLVGSDYTTGIHGIGAVTALEILASFPPTPEQPGETSEMMSM 1019
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 311
+ + K W N + + + P + V++AY P ++ E
Sbjct: 1020 LSGLR--KFRDWWHHGRNGATGTRISLKSKLKNIEIGEGFPSTGVVEAYLQPTVDCSEEE 1077
Query: 312 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
RL Q F W KT++ +LP + D R+
Sbjct: 1078 -----FTWGYPDADRLRDYARQKFGWSQTKTNDILLPVLKRLDERK 1118
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 29/119 (24%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCI----------------------DLSCWIVQL 38
MGV LW ++E K +PL L+NK + + D+S W+ Q+
Sbjct: 1 MGVTGLWKLIEQSGKPVPLDTLENKVLAVGNYGRVFVCGVETKALTVSFWADISIWLHQV 60
Query: 39 ----QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS 93
Q+ S P L GLFHRL L+ IFV DG P +K T +R S
Sbjct: 61 VKGFQDSKGSALPNAHVL---GLFHRLCKLMYYRIKPIFVFDGGAPLLKKQTIAKRQQS 116
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 114/256 (44%), Gaps = 38/256 (14%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 782 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFG 841
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 842 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 900
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ D L+ ++ WS + NK ++ N T
Sbjct: 901 ILTEFSD---LEEF---------------RDWWSEIQLGNKIPDDIHAGFRKKFKKNVTK 942
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ SE V + A + Q W PE+
Sbjct: 943 LFLPPGFPDKAVEKAYLEPEVDPDPSEFKWGVPDLDA--------VRQFLMTTIGWSPER 994
Query: 342 TDEYILPKIAERDLRR 357
TDE ++P I RD+ R
Sbjct: 995 TDEVLVPVI--RDVNR 1008
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQT 87
>gi|242000896|ref|XP_002435091.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
gi|215498421|gb|EEC07915.1| DNA-repair protein xp-G, putative [Ixodes scapularis]
Length = 868
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++ E + L G+P + EAEAQCA L + L G + DSD +LFGARTVYR ++
Sbjct: 644 LVMECQELLRMFGLPFVVSPGEAEAQCAWLEEQGLTQGTVTDDSDAWLFGARTVYRHLFA 703
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+R V Y + D+ +LG R L+ ALL GSDY+ GV G+GP +A +++
Sbjct: 704 SDRRPSV-YRLQDLATQLGLNRQKLVAFALLCGSDYTAGVSGVGPITAMEVLSEFSGEDA 762
Query: 241 LQRIASEGLSFVKRAKNSK 259
LQ + ++++RAK K
Sbjct: 763 LQ-LLENFRTWLERAKREK 780
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW ILE K + L L++K + +D+S W+ Q L+ + S L LFH
Sbjct: 1 MGVQGLWQILEPAGKPVALETLESKVLAVDISMWLHQALKGMRDSEGGPAANAHLVALFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL--RRN 113
R L+ +FV DG +P +K T R + + D + ++ L RRN
Sbjct: 61 RACKLLFYGVKPVFVFDGGVPQLKKQTLAARHQRRAAMLADAQRKARLRLLTSRRN 116
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 29/263 (11%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L SC + L + +++ ID S I Q + + R D L
Sbjct: 1 MGIKGLTKLLGDYAPSCVQQQELKNYFGRKIAIDASMNIYQFLS---AVRAGADNLRNEA 57
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY------RRRLNSGSEVTQDD 101
L GLF+R L+ L +V DG P +K RR+ + + + +++
Sbjct: 58 GEVTSHLSGLFYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAALAKEE 117
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+++ R + +I+++K L +G+P LE EEAEAQCA L E+L S
Sbjct: 118 GDVEAYEKFNRRVNKVSPEVIEQSKRLLRLMGIPILEAPEEAEAQCASLCKENLVYATAS 177
Query: 162 SDSDIFLFGARTVYRDIWLG------ERG-YVVCYEMDDIERKLGFGRNSLITLALLLGS 214
D D FG+ V R +W+G ++G + + + ++ +L F I L +L G
Sbjct: 178 EDMDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFSLEKALLELNFSYEQFIDLCILCGC 237
Query: 215 DYSQGVRGLGPESACQIVKSVGD 237
DY +RG+GP A +++ G+
Sbjct: 238 DYLDSIRGIGPYKAFNLIRKHGN 260
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L DG + DSD+FLFG + V ++++ + V C+ +
Sbjct: 738 FGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVLKNMF-NQSKTVECFLL 796
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
D+ R+LG R++LI LA LLGSDY++G+ G+GP A +++K
Sbjct: 797 PDLARELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLK 838
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW++L + + L ++ K + ID S WI Q Q +K R + + G
Sbjct: 1 MGVKSLWELLTPVGRPVMLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVV-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN 92
R+ L+ +FV DG PA+K ST R N
Sbjct: 60 RRICKLMYYGIKPVFVFDGGAPALKRSTLTERKN 93
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 22/224 (9%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA+L L DG + DSD+F+FG + VY+++ + V C+ +
Sbjct: 6 FGIPYITAPMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNM-FNQSKTVECFLL 64
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
D+ R+LG + +LI LA LLGSDY +G+ G+GP A +++K L + +
Sbjct: 65 SDLSRELGLDQGTLIRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGEDGLHKFKD---WW 121
Query: 252 VKRAKNSKKEG-----WSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCY 306
K KE W+ K + E+ D L E P S V DAY +P
Sbjct: 122 TKVQTGRDKEDHIAWLWTHKYLSSEDKTK--------DLYLPPEWPNSAVRDAYYHPTVD 173
Query: 307 SADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
+D L L + + W K D+ +LP I
Sbjct: 174 ESDEP-----FKWGLPDLDALREFLREELGWGQSKVDDLLLPII 212
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 126/264 (47%), Gaps = 33/264 (12%)
Query: 1 MGVKN-LWDILESCKKTLPLHH-------LQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MGV W++++ PL H LQ+KR+ IDLS WIVQ + V K + K
Sbjct: 1 MGVGGGFWELVK------PLRHSSDDLSTLQDKRLAIDLSHWIVQQEAVLKD---RARKP 51
Query: 53 FLRGLFHRLRAL-IALNCGL--IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
LR LF R+ L +L G +FV DG P +KL R + S + N
Sbjct: 52 HLRLLFFRVVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRLSGIPAAQLNGGDNHR 111
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
R + + C+ + LGL L VP L EAEA CA L + D C + DSD FL
Sbjct: 112 NRAFLENVEECV----ELLGL-LNVPVLRATSEAEALCAELERNGVVDACVTPDSDAFLH 166
Query: 170 GA----RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLG 224
GA +T+ DI ++ V Y DI L R LI LALL+G DY+ +G+ G+G
Sbjct: 167 GASCVIQTLQADI---KKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGIPGVG 223
Query: 225 PESACQIVKSVGDNVVLQRIASEG 248
+A ++V+ + +L + G
Sbjct: 224 YSNAMRLVQHFSKDEILDNLRKWG 247
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 123/261 (47%), Gaps = 17/261 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV NL DI+ K L L L+ + ID S WI Q + + P D+
Sbjct: 1 MGV-NLRDIIFFEK--LELKDLEGLTIAIDASNWIYQFLSSIRQRDGTPLMDRKGRVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR-- 111
L G+ HR AL+ N ++V DG A+K T R E + K K L
Sbjct: 58 LVGILHRTSALVENNIKPVYVFDGKSLALKSETISERTRMRLEAEKRWKEALKKKDLEKA 117
Query: 112 RNMGSEFSCMIKE----AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R S S + KE +K L ++G+P ++ E EAQ L S D D
Sbjct: 118 RKYASRASRISKEIIESSKELLDAMGIPYIQAPNEGEAQAVYLVKNGDAWAVASQDYDCL 177
Query: 168 LFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
LFGA V R++ + + E+D I +KLG R LI +ALL+G+D++ GV+G+G +
Sbjct: 178 LFGAPRVIRNLAISSDINLELLELDKILKKLGISREQLIDIALLVGTDFNPGVKGIGAKR 237
Query: 228 ACQIVKSVGD-NVVLQRIASE 247
+++K GD V++R+ E
Sbjct: 238 GLELIKKFGDIYTVIKRMNLE 258
>gi|452987544|gb|EME87299.1| hypothetical protein MYCFIDRAFT_147956 [Pseudocercospora fijiensis
CIRAD86]
Length = 1298
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 29/264 (10%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI+E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 928 RRDADEVTQTMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFG 987
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI++A LLGSDY++G+ G+G +A +
Sbjct: 988 GTRVYKNMF-NQAKFVECYLTSDLEKEFDLTREKLISIAQLLGSDYTEGLHGVGAVTALE 1046
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ D L K+ + K ++E ++ N L
Sbjct: 1047 IISEFPD-----------LEAFKQWWTGVQTAVIPKSADQEHPFRRKFRKNAKKLFLPPS 1095
Query: 291 TPFSQVIDAY------SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDE 344
P ++V AY SNP+ + V + A F A + W E+TDE
Sbjct: 1096 FPDARVAMAYLKPEVDSNPEAFQF---GVPDLDALRSFLMATIG--------WTQERTDE 1144
Query: 345 YILPKIAERDLRRFANLRANTLAL 368
++P I + + R ++N A
Sbjct: 1145 VLVPVIKDMNRRLDEGTQSNITAF 1168
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW IL+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K T R R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPALKRQTIRAR 91
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 892 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 951
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 952 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 1010
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + S+ K S W ++ N T L
Sbjct: 1011 ILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFW------------KKFKKNATKLFLPPG 1058
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1059 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1113
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1114 --RDMNR 1118
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 56 MGVTCLWTVVKPCARPIKLETLNGKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 115
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 116 RICKLLYFGIKPVFVFDGGAPTLKRQTITAR 146
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 18/199 (9%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVT-QDDKNLDKMSSL 110
L G+F+R LI ++V DG P +K+ RRRL +E K L K+ +
Sbjct: 11 LNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKAKELGKLEEM 70
Query: 111 RR--NMGSEFS-CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ M S + M +E+K L +GVP + E EA+ A LN +++ S D D
Sbjct: 71 RKYSQMSSRLTKGMAEESKELLSRMGVPIVNAPSEGEAEAAYLNYKNITFAAASQDYDSL 130
Query: 168 LFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R YV E+D++ RKLG R LI +A+L+G+DY
Sbjct: 131 LFGAKRLIRNLTITGKRKLPNKDVYVEIKPEMIELDELLRKLGLTREQLIDVAILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKS 234
+ G++G+GP++A +++++
Sbjct: 191 NPDGIKGIGPKTAYKLIRT 209
>gi|355754793|gb|EHH58694.1| hypothetical protein EGM_08605, partial [Macaca fascicularis]
Length = 1000
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 33/250 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 771 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 830 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 880
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 881 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 930
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV------------CAQFFQWPPEKTDEYIL 347
NP A V L+ L ++ ++F W KTDE +
Sbjct: 931 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLF 990
Query: 348 PKIAERDLRR 357
P + + D ++
Sbjct: 991 PVLKQLDAQQ 1000
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKR 91
>gi|400603046|gb|EJP70644.1| DNA excision repair protein [Beauveria bassiana ARSEF 2860]
Length = 1154
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E ++L G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 857 RRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 916
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +++E+ L R LI LA LLGSDY++G+ G+GP +A +
Sbjct: 917 GTRVYKNMFNSNK-FVECYLGNELEKDLSLSRQQLIALAHLLGSDYTEGLPGVGPVTAVE 975
Query: 231 IV 232
I+
Sbjct: 976 II 977
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRR 89
R+ L+ +FV DG PA+K +T ++
Sbjct: 61 RICKLLWFGIQPVFVFDGGAPALKRATIQK 90
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 118/256 (46%), Gaps = 20/256 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 929 RRDADEVTQTMIAECQQLLTLFGLPYITAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 987
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + +V CY D+ + R +I +A LLGSDY+ G+ G+GP +A
Sbjct: 988 GGTRVYKNMFNAAK-FVECYLAQDLTSEFNLTREKMIDIAQLLGSDYTTGIPGIGPVTAL 1046
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 288
+I+ + L + + + G K + + ++ N GT L
Sbjct: 1047 EILSEF-----------QTLEAFRTWWDGVQSGQIKKDEDAKNPFRKKFRKNQGTKLFLP 1095
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P +V DAY +P+ S D E + A L + W E+TDE ++P
Sbjct: 1096 PNFPDPRVTDAYLHPEVDS-DPEPFQWGVP----DLAALRTFLSSQIGWSWERTDEVLVP 1150
Query: 349 KIAERDLRRFANLRAN 364
I + + R +AN
Sbjct: 1151 VIRDMNRREKEGTQAN 1166
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV NLW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTNLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ + +FV DG PA+K T R
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPALKRQTISNR 91
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 130 LSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCY 189
L G+P +E EAEAQCA L L DG + DSDIF+FG + VY++ E+ +V Y
Sbjct: 1 LVPGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNF-FDEQKFVEAY 59
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGL 249
DIER+LG ++ L+ LA+LLG DY+ GVRG+G + +++++ A++G+
Sbjct: 60 YARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAF-------PPAADGV 112
Query: 250 SFVKRAKNSKKEGWSFKCNN--KEESLNQEINVNGTDHSLQR------ETPFSQVIDAYS 301
V S+ W + +++ E+ +G S + + P +I AY
Sbjct: 113 EGV-HGGLSRFRDWMDGIGDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYL 171
Query: 302 NPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P + D+ A+ L + CA W E+T + P
Sbjct: 172 RP---AVDTSGTRFTWARPDLDA--LQRFCADALGWEREETARVVGP 213
>gi|378725893|gb|EHY52352.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 1319
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M++E +AL G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 979 RRDADDVTQVMVQECQALLRLFGLPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFG 1038
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 1039 GTRIYKNMFNAAK-FVECYLASDLEKEFLLDRRRLISFAHLLGSDYTEGIPGIGPVTALE 1097
Query: 231 IV 232
I+
Sbjct: 1098 IL 1099
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++ + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVAPTARPTQLASLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYYGIKPVFVFDGGAPILKRET 87
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 877 RRDADEVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 936
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + V CY D++++L R L+++ALLLGSDY+ G+ G+GP +A +
Sbjct: 937 GTRVYKNMFNSNK-LVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVE 995
Query: 231 IV 232
I+
Sbjct: 996 IL 997
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLWFGIRPVFVFDGGAPALKRQT 87
>gi|355701088|gb|EHH29109.1| hypothetical protein EGK_09444 [Macaca mulatta]
Length = 1194
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 33/250 (13%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 771 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 830 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 880
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 881 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 930
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV------------CAQFFQWPPEKTDEYIL 347
NP A V L+ L ++ ++F W KTDE +
Sbjct: 931 PNPAVAEAYLKPVVDDSKGSFLWGKPDLEKIREYPLLLKREGNTLRYFGWNRTKTDESLF 990
Query: 348 PKIAERDLRR 357
P + + D ++
Sbjct: 991 PVLKQLDAQQ 1000
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDHHGNSIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +FV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPVFVFDGDAPLLKKQTLAKR 91
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 109/247 (44%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 837 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 896
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 897 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ + S+ K S W ++ N T L
Sbjct: 956 ILTEFSTLEDFRDWWSQVQMGAKLPDGSHSAFW------------KKFKKNATKLFLPPG 1003
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1058
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1059 --RDMNR 1063
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPTLKRQTITAR 91
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 29/259 (11%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L D+++ K+ L L+ KRV ID + Q + +P L L
Sbjct: 2 DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLS 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSLRR 112
GLF+R ++ I+V DG P K RR + E + K+ K+ LR+
Sbjct: 60 GLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRK 119
Query: 113 NMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M++E+K L ++G+P ++ E EA+ A LN L S D D LF
Sbjct: 120 YSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILF 179
Query: 170 GARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS- 217
GA+ + R++ + G+R YV E + + +KLG R LI + +L+G+DY+
Sbjct: 180 GAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNP 239
Query: 218 QGVRGLGPESACQIVKSVG 236
G+RG+GPE A +I+K G
Sbjct: 240 DGIRGIGPERALKIIKKYG 258
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS--GSEVTQDDKNLDKMSSLRR 112
R LF R +L+ I++ +G P +K ++R + GS ++ S+ R
Sbjct: 1 RNLFFRTASLLENGIDPIYILEGKAPELKAQVMQKRREARFGSNQPATSESATSKSTGR- 59
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
S + + +E L +LGV + + EAEA CA LN + + +GC + D D FL+GA+
Sbjct: 60 ---SRYKYIQQECTELLTALGVVTITSMGEAEAACAGLNHQGVVEGCITIDGDAFLYGAK 116
Query: 173 TVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESAC 229
TVYR++ + VC Y MD IE +L R+ LI +A+L G DY GV G+G ESA
Sbjct: 117 TVYRNLSTDIHNF-VCQEYSMDVIETRLNLSRDKLIAMAILFGCDYLPDGVPGVGKESAL 175
Query: 230 QIVKSV 235
+++ ++
Sbjct: 176 RVISTI 181
>gi|168010775|ref|XP_001758079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690535|gb|EDQ76901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1718
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
RN S S M E + L G+P + EAEAQCA L+ E L DG + D D+FLFG
Sbjct: 1037 RNADSVTSEMFAECQELLQMFGLPYVIAPMEAEAQCAFLDAEKLVDGVVTDDVDVFLFGG 1096
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
R VY++I+ +R YV Y M D+E +LG R+ LI +ALLLGSDY++GV G+G +A ++
Sbjct: 1097 RNVYKNIF-DDRKYVETYYMKDVETELGLDRDKLIRMALLLGSDYTEGVSGIGIVNAIEV 1155
Query: 232 VKS 234
V +
Sbjct: 1156 VNA 1158
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW++L + + + L ++++ ID S WI+Q + R + L G F
Sbjct: 1 MGVHGLWELLAPVGRRVSVESLGSRKLAIDASIWIIQFMKAMRDDRGDMIRNAHLLGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
R+ L+ L +FV DG PA+K T RRR
Sbjct: 61 RICKLLFLRVKPVFVFDGGTPALKRRTVIARRR 93
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 863 RRDADEVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFG 922
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + V CY D++++L R L+++ALLLGSDY+ G+ G+GP +A +
Sbjct: 923 GTRVYKNMFNSNK-LVECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVE 981
Query: 231 IV 232
I+
Sbjct: 982 IL 983
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLWFGIRPVFVFDGGAPALKRQT 87
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 780 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 839
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 840 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 898
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ GL ++ WS + NK ++ N T
Sbjct: 899 ILTEFS-----------GLEEF-------RDWWSQVQLGNKIPDDPHARFRKKFKKNITK 940
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 941 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 992
Query: 342 TDEYILPKIAERDLRRFANLRANTLAL 368
TDE ++P I + + R ++N
Sbjct: 993 TDEVLVPVIRDANRREQEGTQSNITGF 1019
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 780 RRDADEVSQIMVTECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFG 839
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 840 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 898
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ GL ++ WS + NK ++ N T
Sbjct: 899 ILTEFS-----------GLEEF-------RDWWSQVQLGNKIPDDPHARFRKKFKKNITK 940
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 941 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATVG--------WSPER 992
Query: 342 TDEYILPKIAERDLRRFANLRANTLAL 368
TDE ++P I + + R ++N
Sbjct: 993 TDEVLVPVIRDANRREQEGTQSNITGF 1019
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPILKRQT 87
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 114/253 (45%), Gaps = 27/253 (10%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E +AL G+P + EAEAQC+ L L DG + DSD FLFG
Sbjct: 896 RRDADEVTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFG 955
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ G + +V C+ D+E+++ R LI+LA LLGSDY+ G+ G+GP +A +
Sbjct: 956 GTRVYKNMFNGNK-FVECFLAADLEKEMSLSREKLISLAQLLGSDYTDGLPGVGPVTAME 1014
Query: 231 IVKSVGDNVVLQRIASEGL-SFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR 289
I+ +GL F + + G S + + + GT L
Sbjct: 1015 ILSEF--------PGPQGLEEFRTWWDDVQMHGRSREADAGSPFRRKFRKSQGTKLFLPT 1066
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA-----RLHQVCAQFFQWPPEKTDE 344
P + V AY P+ S + FQ L W ++TDE
Sbjct: 1067 GFPNAAVAAAYKKPEVDS----------STEPFQWGVPDLDGLRSFLMSTIGWSQDRTDE 1116
Query: 345 YILPKIAERDLRR 357
++P I RD+ R
Sbjct: 1117 VLVPVI--RDMNR 1127
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWQVLQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K ST
Sbjct: 61 RVCKLLWFGILPVFVFDGGAPALKRST 87
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 116/256 (45%), Gaps = 38/256 (14%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 687 RRDADEVSHIMVTECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 746
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + YV CY D+E++ R LI+ + LLGSDY++G+ G+GP +A +
Sbjct: 747 GTRIYKNMF-NQSKYVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALE 805
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWS-FKCNNK-----EESLNQEINVNGTD 284
I+ L+ ++ WS + NK + ++ N T
Sbjct: 806 ILTEFS---SLEEF---------------RDWWSQVQLGNKIPDDTHAAFRKKFKKNLTK 847
Query: 285 HSLQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEK 341
L P V AY P+ S SE V + A F A + W PE+
Sbjct: 848 LFLPPGFPDKAVEKAYLEPEVDSDPSEFKWGVPDLDAVRQFLMATIG--------WSPER 899
Query: 342 TDEYILPKIAERDLRR 357
TDE ++P I RD+ R
Sbjct: 900 TDEVLVPVI--RDVNR 913
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L +R+ ID S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKRRLAIDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPVLKRQT 87
>gi|1389577|dbj|BAA03813.1| ERCC5 [Mus musculus]
Length = 1170
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLSDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHA---RLHQVCAQFFQWPPEKTDEYILP 348
NP A V L+ ++ + ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFXQRYFGWNRMKTDESLYP 978
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>gi|303607|dbj|BAA03812.1| ERCC5 [Homo sapiens]
Length = 1185
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAVLDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY+ G G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-GNTNCGLCTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 877 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 927 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKISEFCQRYFGWNRTKTDESLFPVLKQLDAQ 986
Query: 357 R 357
+
Sbjct: 987 Q 987
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHPLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1143
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 806 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 865
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 231 IV 232
I+
Sbjct: 925 IL 926
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|326433004|gb|EGD78574.1| xeroderma pigmentosum group G complementing factor [Salpingoeca sp.
ATCC 50818]
Length = 1980
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 45/255 (17%)
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
+G + MI + + L G P + +EAE+QCA L + L G + DSD+FLFG R
Sbjct: 1164 VGDVTTDMIVDVQHLLRLFGCPYVIAPQEAESQCAQLEQQGLVSGVITDDSDVFLFGGRR 1223
Query: 174 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
VYR + ++ + Y DD+E G R+SLI LA LLGSDY+ GV G+GP +A +++
Sbjct: 1224 VYRHV-CSQKKDMQLYLADDLENLAGLDRSSLIDLAYLLGSDYTPGVAGIGPVTAVEVIS 1282
Query: 234 SVGD---------NVVLQRIASE-GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
+ + VL A G+ + R +N+ +F
Sbjct: 1283 EFHNADSTLHDFRDWVLNPDAPRVGVRSIDRLRNTIALHPAFP----------------- 1325
Query: 284 DHSLQRETPFSQVIDAYSNPKCY-SADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKT 342
+ L R + V+DA P + S D + + R +A+ L W +
Sbjct: 1326 -NPLVRRAYLAPVVDADDQPFTWASIDLDGLRRFVAEKLG--------------WERHRA 1370
Query: 343 DEYILPKI-AERDLR 356
D+YILP + RD R
Sbjct: 1371 DDYILPLVQPARDAR 1385
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +LE + + + L+ + + +D S W L + ++ R +L H
Sbjct: 1 MGVKGLWQLLEVVGRPVQMDDLEGQVLAVDASIW---LHQIVRAMRNDKGELVRNAHIH- 56
Query: 61 LRALIALNCGLI-------FVSDGSIPAIKLSTYRRRLNSGSEVTQ 99
A++A C LI FV DG P IK T R +E Q
Sbjct: 57 --AMLARICRLIHHRIKPVFVFDGGAPLIKKQTIAERSKRQTEGAQ 100
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 806 RRDADEVSQIMVAECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFG 865
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI+ A LLGSDY++G+ G+GP +A +
Sbjct: 866 GTRIYKNMF-NQAKFVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALE 924
Query: 231 IV 232
I+
Sbjct: 925 IL 926
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|405975699|gb|EKC40248.1| DNA repair protein complementing XP-G cells-like protein
[Crassostrea gigas]
Length = 1005
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 23/230 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M EA+ L GVP + EAEAQCA L+ +L +G + DSDI+LFG R VY++ +
Sbjct: 637 MYLEAQDLLKLFGVPFVLSPTEAEAQCAWLDSANLTNGTITDDSDIWLFGGRRVYKNFFN 696
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS--VGDN 238
+R V + D I+ +LG R I +ALL GSDY+ G+ G+GP +A +I+ D
Sbjct: 697 QDR-TVELFMNDSIQSQLGLNREIFINMALLCGSDYTDGIPGVGPVTAMEILSEFPAADL 755
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
LQ S K +N K K +K L E++ DH +++D
Sbjct: 756 SALQAFKSWWEETQKHKRNPKIS----KIRSKLRQL--EVSEGFPDH---------RIVD 800
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
AY P + EA L L + + W KTDE +LP
Sbjct: 801 AYLKPTVDDS-KEAFSWALPDLDL----LREYAKEKLGWAQVKTDEVLLP 845
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQN--VNKSYRPQTDKLFLRGLF 58
MGV LW +L+ + + L L+ K + +D+S W+ Q NK P ++ L LF
Sbjct: 1 MGVHGLWHLLQPTGRPVSLQSLEGKVLAVDVSIWLHQAVKGMRNKDGSPISN-AHLHVLF 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R
Sbjct: 60 TRVCKLLYYKIKPVFVFDGRVPELKKQTMASR 91
>gi|222624409|gb|EEE58541.1| hypothetical protein OsJ_09837 [Oryza sativa Japonica Group]
Length = 1494
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 861 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 920
Query: 179 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 216
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 921 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 979
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRI 244
++G+ G+G +A ++ + + LQ+
Sbjct: 980 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1007
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW++L + + + L KR+ +D S W+VQ + + + L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRT 87
>gi|218192294|gb|EEC74721.1| hypothetical protein OsI_10446 [Oryza sativa Indica Group]
Length = 1487
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 179 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 216
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 914 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 972
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRI 244
++G+ G+G +A ++ + + LQ+
Sbjct: 973 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1000
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW++L + + + L KR+ +D S W+VQ + + + L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRT 87
>gi|390340292|ref|XP_791943.2| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Strongylocentrotus purpuratus]
Length = 1373
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M ++K + G+P +E +EAEAQCA L+L + +G + D DI+LFG R V+R +
Sbjct: 854 TMYADSKEMLQCFGIPYIESPQEAEAQCAFLDLTNQAEGTITDDGDIWLFGGRRVFRH-F 912
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
++ + + DIER L R LI LA L+GSDY+ G++G+G SVG
Sbjct: 913 FSKKKDPEYFRVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIG---------SVGAME 963
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+L GL +K K+ WS + SLN L E P + A
Sbjct: 964 ILAEFKGHGLKTLKDFKS----WWSRTQDQGVPSLNA-TRSKWCKLVLPDEFPNPLIAKA 1018
Query: 300 YSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
Y+NP ++ L L + + F W K DE +LP
Sbjct: 1019 YTNPAIDESE-----EGFQWGLPDLGLLREFARERFGWMKTKLDEQLLP 1062
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+ LW ++ES + + L L+ K + +D+S W+ Q V + L+ LF+R
Sbjct: 1 MGVQGLWRLVESTGRPVNLESLEGKVIAVDVSIWLNQA--VLGVHGNSLSNPHLQVLFNR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIK---LSTYRRRLN 92
+ L+ IFV DG+ P +K L+ R+R N
Sbjct: 59 ICKLLFYRIKPIFVFDGAPPQLKKQTLAARRQRKN 93
>gi|108706747|gb|ABF94542.1| XPG I-region family protein, expressed [Oryza sativa Japonica Group]
Length = 1477
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 23/148 (15%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
S M E + L G+P + EAEAQCA + + +L DG + DSD+FLFGAR VY++I
Sbjct: 854 SEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEMTNLVDGVVTDDSDVFLFGARNVYKNI 913
Query: 179 WLGERGYVVCYEM----------------------DDIERKLGFGRNSLITLALLLGSDY 216
+ +R YV Y M DIE +LG R LI +A+LLGSDY
Sbjct: 914 F-DDRKYVETYLMKLKQWEVHVLAGPSTANIVIHFQDIESELGLTREQLIRMAMLLGSDY 972
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRI 244
++G+ G+G +A ++ + + LQ+
Sbjct: 973 TEGISGIGIVNAIEVAHAFPEEDGLQKF 1000
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFH 59
MGV LW++L + + + L KR+ +D S W+VQ + + + L G
Sbjct: 1 MGVHGLWELLAPVGRRVSVETLAGKRLAVDASIWMVQFMRAMRDDKGDMIRDAHLLGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ L +FV DG+ PA+K T
Sbjct: 61 RICKLLFLRARPVFVFDGATPALKRRT 87
>gi|346321714|gb|EGX91313.1| DNA excision repair protein Rad2 [Cordyceps militaris CM01]
Length = 1162
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E ++L G+P + EAEAQCA L + DG + DSD FLFG
Sbjct: 861 RRDADEVTQVMVSECQSLLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFG 920
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY ++E+ L R LI+LA LLGSDY++G+ G+GP +A +
Sbjct: 921 GTRVYKNMFNSNK-FVECYIGSELEKDLSLSRQQLISLAHLLGSDYTEGLPGVGPVTAVE 979
Query: 231 IV 232
I+
Sbjct: 980 IL 981
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVNGLWTVVQPCARPTNLATLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRR 89
R+ L+ IFV DG PA+K +T ++
Sbjct: 61 RICKLLWFGIQPIFVFDGGAPALKRATIQK 90
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 29/256 (11%)
Query: 8 DILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LRGLF 58
D+++ K+ L L+ KRV ID + Q + +P L L GLF
Sbjct: 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLSGLF 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSLRRNMG 115
+R ++ I+V DG P K RR + E + K+ K+ LR+
Sbjct: 60 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 119
Query: 116 SEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ + M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+
Sbjct: 120 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 179
Query: 173 TVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGV 220
+ R++ + G+R YV E + + +KLG R LI + +L+G+DY+ G+
Sbjct: 180 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 239
Query: 221 RGLGPESACQIVKSVG 236
RG+GPE A +I+K G
Sbjct: 240 RGIGPERALKIIKKYG 255
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 2/120 (1%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI + + G+P + EAEAQCA L L DG + DSD+FLFGA+ VY++++
Sbjct: 818 AMIAQIMTMLRLFGIPYITAPMEAEAQCAALVDLGLVDGVITDDSDVFLFGAKRVYKNMF 877
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDN 238
+ V C+ + D+ R+LG R +LI LA LLGSDY+ G+ G+GP A ++++ GD+
Sbjct: 878 -NQSKTVECFLLTDLARELGLDRGTLIRLAYLLGSDYTLGLPGVGPVVAMELLQEFPGDD 936
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L + K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWSLLSPAGRPVMLETAEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG PA+K T R++ SG+
Sbjct: 60 RRICKLLFYGIKPVFVFDGGAPALKRMTIAERKKKKSGA 98
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 117/256 (45%), Gaps = 20/256 (7%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLF 169
RR+ MI E + L G+P + EAEAQCA L+NL L DG + DSD FLF
Sbjct: 931 RRDADEVTQTMIAECQQLLTLFGLPYVTAPMEAEAQCAELVNL-GLVDGIVTDDSDTFLF 989
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
G VY++++ + +V CY D+ + R +I +A LLGSDY+ G+ G+GP +A
Sbjct: 990 GGTRVYKNMFNAAK-FVECYLAQDLASEFSLTREKMIAIAQLLGSDYTTGIPGIGPVTAL 1048
Query: 230 QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-GTDHSLQ 288
+I+ + L + + + G K + + + N GT L
Sbjct: 1049 EILSEF-----------QTLEAFRAWWDGVQSGQIRKDEDAKNPFRKRFRKNQGTKLFLP 1097
Query: 289 RETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
P +V +AY +P+ S D E + A L + W EKTDE ++P
Sbjct: 1098 PNFPDPRVAEAYLHPEVDS-DPEPFQWGVP----DLASLRTFLSSQIGWSWEKTDEVLVP 1152
Query: 349 KIAERDLRRFANLRAN 364
I + + R +AN
Sbjct: 1153 VIRDMNRREKEGTQAN 1168
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTALWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ + +FV DG PA+K T R
Sbjct: 61 RICKLLFIGIKPVFVFDGGAPALKRQTISNR 91
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 15/239 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + L G+P + EAEAQCA L L DG + DSD+FLFG + V+++++
Sbjct: 743 MISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF- 801
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ + D+ R+LG R +LI LA LLGSDY +G+ G+GP A +++K
Sbjct: 802 NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGEDG 861
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + L V+ ++ +E S ++ D L +E P + V DAY
Sbjct: 862 LHKFKDWWLK-VQSGRDKDEENKSKFRKRFKKKY--------KDLYLPQEWPNAAVRDAY 912
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFA 359
+P S++ L L + W K D+ +LP I + + R+ A
Sbjct: 913 YHPTVDSSEEP-----FKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQA 966
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWSLLSPVGRPVMLETIEGKALAIDSSIWIYQFQATMRDKDGRALVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ 99
R+ L+ +FV DG PA+K +T R++ SG+ V+
Sbjct: 60 RRICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGAAVSH 102
>gi|358060342|dbj|GAA93747.1| hypothetical protein E5Q_00393 [Mixia osmundae IAM 14324]
Length = 1209
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 1/123 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RRN M KE + + G+P ++ EAEAQCA L + L DG + DSD+FLFG
Sbjct: 809 RRNADEITQQMAKEIRVMLRLFGIPYVDAPMEAEAQCAQLWMAGLVDGIITDDSDVFLFG 868
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
V+++++ + YV C+ + DIER+L R+ L LA LGSDY +G+ +GP +
Sbjct: 869 GGRVFKNMF-NQNKYVECFLLSDIERELSLDRDKLCKLAYFLGSDYVEGLPKVGPVLGME 927
Query: 231 IVK 233
+++
Sbjct: 928 LMR 930
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV LW I++ + + L L NKR+ +D S W+ Q Q + + D + G
Sbjct: 1 MGVHGLWPIIQPVARPIALETLGNKRMAVDSSIWLHQFQLAMRDKEGRALDNAHILGFLR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSE 96
R+ L+ +FV DG P IK +S +RR G++
Sbjct: 61 RICKLLYYGIKPVFVFDGGAPVIKRIAVSERKRRKRGGAD 100
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 31/265 (11%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV N+ +I+ + +TL L L+ K V ID + Q + +P L
Sbjct: 1 MGV-NIREIIPPNAIQTLSLDALRGKAVAIDAYNALYQFLAAIR--QPDGTPLMDSRGRI 57
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GLF+R LI +++V DG P IK RR SE + + K L
Sbjct: 58 TSHLSGLFYRTINLIEHGIKVVYVFDGKPPEIKSIEIERRKKVKSEAAKKYEEAIKKGDL 117
Query: 111 ---RR--NMGSEFS-CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
RR M S + M+KEAK L ++GVP ++ + EAQ A + + S D
Sbjct: 118 EAARRYAQMASRLTEDMVKEAKRLLDAMGVPWVQAPADGEAQAAYMARKGDVWAAASQDY 177
Query: 165 DIFLFGARTVYRDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALLLG 213
D LFGA + R++ + R YV E+D + + LG R LI + +L+G
Sbjct: 178 DALLFGAPRLVRNLTITGRRKLPKKDVYVEIKPELIELDKLLKALGITREQLIVIGILVG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVGD 237
+DY+ GVRG+GP++A ++VK+ D
Sbjct: 238 TDYNPDGVRGIGPKTALRMVKAQPD 262
>gi|326663749|ref|XP_003197653.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Danio rerio]
Length = 1022
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 20/188 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E++ L GVP + EAEAQCA L+ G + DSDI+LFG R VYR+ +
Sbjct: 658 MCQESQELLRLFGVPFIVAPMEAEAQCAALDRLDQTHGTITDDSDIWLFGGRHVYRN-FF 716
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ YV Y++ D++ +LG R+ LI LA LLGSDY++G+ G+G + +I
Sbjct: 717 NQNKYVEHYQIVDMQNQLGLDRSKLINLAYLLGSDYTEGIPGVGYVTGMEI--------- 767
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W+ E N++++VN D ++++ Q+ +
Sbjct: 768 LNEFPGAGLEPLVQL----SEWWT------EAQENKKLSVNPKDTKVKKKLRNLQIHPGF 817
Query: 301 SNPKCYSA 308
NP A
Sbjct: 818 PNPAVAQA 825
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWKLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDRDGNAVQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEVTQDDKNL 104
RL L+ +FV DG P +K T +RR + E Q + L
Sbjct: 61 RLCKLLFFRIRPVFVYDGDAPLLKKQTLAVRRQRREETNRESRQTSEKL 109
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 20/247 (8%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 837 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFG 896
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 897 GTRVYKNMF-NQVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALE 955
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I+ L+ R S+ + + ++ + ++ N T L
Sbjct: 956 ILTEFS---TLEDF---------RDWWSQVQMGAQLPDDSHSAFRKKFKKNATKLFLPPG 1003
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P S+V AY P+ S S + L Q W E+TDE ++P I
Sbjct: 1004 FPDSRVDTAYLEPEVDSDPS-----AFQWGVPDLNALRQFLMATVGWTQERTDEVLVPVI 1058
Query: 351 AERDLRR 357
RD+ R
Sbjct: 1059 --RDMNR 1063
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD 100
R+ L+ +FV DG PA+K T R T+D
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQTITARKKRREGRTED 101
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis
SLH14081]
Length = 1128
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 790 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 849
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 850 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 908
Query: 231 IV 232
I+
Sbjct: 909 IL 910
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 828 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 887
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 888 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 946
Query: 231 IV 232
I+
Sbjct: 947 IL 948
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSDIFLFG
Sbjct: 828 RRDADEVSHIMVSECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFG 887
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+E++ R+ LI A LLGSDY++G+ G+GP +A +
Sbjct: 888 GTRVYKNMFNTVK-FVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALE 946
Query: 231 IV 232
I+
Sbjct: 947 IL 948
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVKPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDREGNALRNAHIVGFFQ 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K T
Sbjct: 61 RICKLLYFGIKPVFVFDGGAPALKRQT 87
>gi|444731111|gb|ELW71474.1| DNA repair protein complementing XP-G cells [Tupaia chinensis]
Length = 1217
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 25/237 (10%)
Query: 134 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 193
+P +E EAEAQCA+L+L G + DSDI+LFGAR VY++ + + +V Y+ D
Sbjct: 821 IPYIEAPMEAEAQCAVLDLTDQTAGTITDDSDIWLFGARHVYKN-FFNKNKFVEYYQYVD 879
Query: 194 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 253
+LG RN LI LA LLGSDY++G+ +G +A +I L GL +
Sbjct: 880 FHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI---------LNEFPGHGLEPLL 930
Query: 254 RAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSAD-SEA 312
+ E W +E +Q++ N D ++R+ Q+ + NP A
Sbjct: 931 KF----SEWW------QEAQKHQKLRPNPHDTKVKRKLRKLQLAPGFPNPAVADAYLKPV 980
Query: 313 VHRVLAQHLFQHARLHQVCA---QFFQWPPEKTDEYILPKIAERDLRRFANLRANTL 366
V L+ L ++ ++F W KTDE + P + + ++++ LR ++
Sbjct: 981 VDASKGSFLWGKPDLDKIREYPFRYFGWNRTKTDESLFPVLKQLNVQQ-TQLRIDSF 1036
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 43/260 (16%)
Query: 105 DKMSSLRRNMGS------EFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DK + L N+G + S I+ EA+ L G+P + EAEAQCA L L D
Sbjct: 715 DKQTELMANIGKLERQGIDISDQIQIEAQELLRLFGIPYIIAPMEAEAQCAYLEQIHLID 774
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
G + DSDI+LFG + VY++ + + V+ + DI+ RN +I LALL+GSDY+
Sbjct: 775 GTITDDSDIWLFGGQCVYKNFFDNNKK-VLEFRSCDIQHYFKLTRNEMIRLALLVGSDYT 833
Query: 218 QGVRGLGPESACQIVK---SVGDNVVLQRIASEGL-SFVKRAKNSKKEGWSFKCNNKEES 273
G+ G+GP +A +I+ S GD+++ +GL +F +N K G K N + +
Sbjct: 834 TGLTGIGPVTALEILAAFPSEGDDLL------QGLINFSSWIENGKTAGPG-KANLRTKL 886
Query: 274 LNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LH 328
N +I Q+ P V+ AY +PK ++ F + L
Sbjct: 887 QNLQI---------QKGFPSQAVVQAYLSPKVDE----------SKETFTWGKPNIILLA 927
Query: 329 QVCAQFFQWPPEKTDEYILP 348
Q F W K D+ I P
Sbjct: 928 DYVKQKFGWDKNKYDKIIEP 947
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L++ K +PL L+ K + ID+S WI Q LQ + L GLFH
Sbjct: 1 MGVYGLWRLLDATGKQVPLETLEGKILAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K +T R
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKNTIALR 91
>gi|380025170|ref|XP_003696351.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis florea]
Length = 1095
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 11/146 (7%)
Query: 105 DKMSSLRRNMGS------EFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DK + L N+G + S I+ EA+ L G+P L EAEAQCA L L D
Sbjct: 703 DKQTELIANIGKLERQGIDISDQIRIEAQELLKLFGIPYLVAPMEAEAQCAYLEQIHLTD 762
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
G + DSDI+LFG + VY++ + + V+ + DI+R RN +I LALL+GSDY+
Sbjct: 763 GTITDDSDIWLFGGQCVYKNFFDNNKK-VLEFRACDIQRYFKLTRNEMIRLALLVGSDYT 821
Query: 218 QGVRGLGPESACQIVK---SVGDNVV 240
G+ G+GP +A +I+ S G+N++
Sbjct: 822 TGLTGIGPVTALEILAAFPSEGENLL 847
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L + K +PL L+ K + ID+S WI Q LQ + L GLFH
Sbjct: 1 MGVYGLWRLLNTTGKQVPLETLEGKILAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST--YRRRLNSGSEV------TQDDKNLDKMSSLR 111
R+ L+ +FV DG +P +K T RR+ S ++ T+ NL K S+++
Sbjct: 61 RICKLLYYKIKPVFVFDGGVPMLKKDTIALRRKQKSMAKNKAQQMRTELINNLIKHSTVK 120
Query: 112 RNMGSEFS--CMIKEAKALGLSL----------GVPCLEGVEEAEAQC 147
+ +E + E+ + +SL +P + +AE+ C
Sbjct: 121 TALNTEMQNESITNESSEIIISLQNKQTVDDMFKLPSIPSTSKAESSC 168
>gi|393234466|gb|EJD42028.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 548
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/410 (26%), Positives = 160/410 (39%), Gaps = 76/410 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD L+ +T L L + R+ ID S W +Q NK
Sbjct: 1 MGVPGLWDALQPAARTQSLSQLAVMQGFKSNTAGHRGFRIGIDASIWFFHMQVFNKKAVC 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ +R LF R +L +FV DG R R G +++
Sbjct: 61 MGENPEIRTLFFRCAKFASLPLLPLFVFDGP--------ERPRWKRGKRISR-------- 104
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R++M +++ + + + G C+ EAEA+ A LN + D S D D F
Sbjct: 105 ---RKDM-----RLVEGMQEIIEAFGYECIHAPGEAEAELAHLNRIGIIDAILSDDVDTF 156
Query: 168 LFGARTVYRD---IWLGERG-------------YVVCYEMDDI--ERKLGFGRNSLITLA 209
LFGA V R+ RG +V CY DD+ + + LI +A
Sbjct: 157 LFGASLVIRNPSATLSANRGNPIKNSEGRADGNHVKCYRADDLRTHEDIALTQGGLILIA 216
Query: 210 LLLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVK-RAKNSKKEGWSFKC 267
LL G DY GVRG+G A + + GD +V E + +K A + + W +
Sbjct: 217 LLSGGDYHPGVRGIGMGIARGLAQCGFGDQLV------EAMRTLKGHALETFLQQW--RA 268
Query: 268 NNKEESLNQEINVNGTDH-----SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLF 322
N E + G + + R+ P V+DAY NP A +H + +
Sbjct: 269 NVAHELRTDSRGLVGRKYRQLANTFSRDFPDLSVVDAYVNPVVSQARG-TLHDLKWRREP 327
Query: 323 QHARLHQVCAQFFQWPP-----EKTDEYILPKIAERDLRRFANLRANTLA 367
L ++C + F+W E+ + P I R LRR L +T A
Sbjct: 328 DLLLLAKLCERHFEWGYTDAILERFRTLVWPGIVCRLLRRSVLLAEDTAA 377
>gi|348516587|ref|XP_003445820.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oreochromis niloticus]
Length = 1119
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP L EAEAQCA L+ G + DSD++LFG R VY++ +
Sbjct: 727 MYLESQELLRLFGVPYLVAPMEAEAQCAALDWADHTHGTITDDSDVWLFGGRHVYKNFFS 786
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ YV Y+ D++ +LG R +I LA LLGSDY++GV G+G + +I
Sbjct: 787 QDK-YVEHYQYSDLQSQLGLDRTKMINLAYLLGSDYTEGVPGVGYVTGMEI--------- 836
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKE----ESLNQEINVNGTDHSLQRETPFSQV 296
L GL + + N W + K+ + + ++ D LQ P V
Sbjct: 837 LNEFPGPGLEPLIQFSN-----WWSEAQEKKRLVSDPRDTKVKKKLRDVKLQPGFPNPVV 891
Query: 297 IDAYSNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIA 351
AY +P ++S F R + + C F W KT+E + P I
Sbjct: 892 AQAYLHPTVDQSES----------FFSWGRPQLDMIKEFCLSRFGWSSRKTEETLQPVIK 941
Query: 352 E 352
+
Sbjct: 942 Q 942
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVHNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK 106
R+ L+ +FV DG P +K T R E+T++ +N ++
Sbjct: 61 RICKLLFFRIRPVFVFDGDAPLLKKQTLALRRQRKEELTRESRNTNE 107
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L +L DG + DSD+FLFGA V+++++ + V C+
Sbjct: 773 FGIPYMTAPMEAEAQCATLVSLNLVDGVITDDSDVFLFGAARVFKNMF-NQSKTVECFLA 831
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 244
D++R+LG R LI LA LLGSDY++G+ G+GP A ++++ L+R
Sbjct: 832 ADLQRELGLDRGVLIRLAYLLGSDYTEGLPGVGPVMAMELLREFPGEDGLERF 884
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L +++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWQLLAPVGRPVQLENMEGKTMAIDSSIWIYQFQATMRDKEGRVLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ 99
R+ L+ +FV DG PA+K +T +R ++ T+
Sbjct: 60 RRITKLLFYGIKPVFVFDGGAPALKRNTLNQRRERKTDATE 100
>gi|392577233|gb|EIW70362.1| hypothetical protein TREMEDRAFT_43101 [Tremella mesenterica DSM 1558]
Length = 1306
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I
Sbjct: 904 APMIAQIQTLLRHFGIPYITAPMEAEAQCAKLATLGLVDGIITDDSDVFLFGGNQCFKNI 963
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ + YV C+ DI+R++ R LI+LA LLGSDY+ G+ G+GP A +++
Sbjct: 964 F-NDSKYVECFLSSDIQREISLDRERLISLAYLLGSDYTIGLPGVGPVIALELL 1016
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + L L+ KR+ ID S W+ Q Q +K R + L G
Sbjct: 1 MGVKGLWSLLNPVARPVQLESLEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG P +K +T R+R +G+
Sbjct: 60 RRINKLLFHGIKPVFVFDGGAPVLKRNTIAERKRRKAGA 98
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 15/240 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + L G+P + EAEAQCA L L DG + DSD+FLFG + V+++++
Sbjct: 11 MISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFKNMF- 69
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ + D+ R+LG R +LI LA LLGSDY +G+ G+GP A +++K
Sbjct: 70 NQSKTVECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKEFPGEDG 129
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + L V+ ++ +E + + D L +E P + V DAY
Sbjct: 130 LHKFKDWWLK-VQSGRDKDEE--------NKSKFRKRFKKKYKDLYLPQEWPNAAVRDAY 180
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
+P S++ L L + W K D+ +LP I + + R+ A
Sbjct: 181 YHPTVDSSEEP-----FKWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQAT 235
>gi|209878979|ref|XP_002140930.1| DNA-repair protein UVH3 [Cryptosporidium muris RN66]
gi|209556536|gb|EEA06581.1| DNA-repair protein UVH3, putative [Cryptosporidium muris RN66]
Length = 1017
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 19/262 (7%)
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+ DK + K RR +E + I+ + + L + G+P ++ EAEAQ ++L LCD
Sbjct: 721 EHDKIMSKFQVQRRYTNAEITKEIQFQVRMLLQAFGIPWIDSPGEAEAQASILTQLGLCD 780
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGF-GRNSLITLALLLGSDY 216
G S DSD LFGA+ VYR+ + G V Y DIE LG + + LALLLG DY
Sbjct: 781 GVLSDDSDCILFGAKCVYRNFFCG--TTVEKYVKVDIENFLGIKNHDQMCILALLLGCDY 838
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
+ GV G+GP +A +I+K+ + ++++ + R + +G + + +N + +
Sbjct: 839 TVGVSGVGPVNALEILKAYPNLSDMEKLKQWSTNLANRYDSD--DGINLQTDNIVQQEFK 896
Query: 277 EINVNGTDH-SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFF 335
++ N S + P VI+A NP V + + +F +V +
Sbjct: 897 RVHSNYRYQWSFPSDFPSDAVINAIRNP--------TVDKSMEPFIFGDIEKEKVADIMY 948
Query: 336 QW---PPEKTDEYILPKIAERD 354
++ P EK IL K+ E++
Sbjct: 949 RYTTIPKEKV-YNILDKVIEKN 969
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQN---VNKSYRPQTDKLFLRGL 57
MGVK LWDI+ + L+ + + +D S W+ Q N+ P L G
Sbjct: 1 MGVKGLWDIVAPSGYRVDPESLEGQILAVDASIWLKQFLTGLRDNEGNTPLGAHLL--GF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F RL L+ + + DG P IK T +R
Sbjct: 59 FKRLCKLLYYGIYPVVIFDGIPPEIKKRTLEQR 91
>gi|383863581|ref|XP_003707258.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Megachile rotundata]
Length = 1072
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 12/151 (7%)
Query: 105 DKMSSLRRNMGS------EFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D+ + L N+G + S I+ EA+ L G+P + EAEAQCA L L D
Sbjct: 678 DEQTELMANIGKLERQGIDISDRIRTEAQELLRLFGIPYIVAPMEAEAQCAYLEQIHLTD 737
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
G + DSDI+LFG + VY++ + + V+ + + DIE RN +I LALL+GSDY+
Sbjct: 738 GTITDDSDIWLFGGQCVYKNFFNNNKK-VLQFCLGDIEHHFKLTRNEMIQLALLVGSDYT 796
Query: 218 QGVRGLGPESACQIVK---SVGDNVVLQRIA 245
G+ G+GP +A +I+ S GDN +LQ +A
Sbjct: 797 VGLTGIGPVTALEILAAFPSQGDN-LLQGLA 826
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ K +PL L+ K + ID+S WI Q LQ + L GLF+
Sbjct: 1 MGVYGLWRLLDKTGKQVPLETLEGKVLAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFY 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K +T R
Sbjct: 61 RICKLLYYRIKPVFVFDGGVPMLKKNTIALR 91
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG + V ++++ + V CY +
Sbjct: 827 FGIPYITAPMEAEAQCAELLTLGLVDGIITDDSDVFLFGGQRVLKNMF-NQSKTVECYLL 885
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
D++R+LG R+ LI LA LLGSDY++G+ G+GP A +++
Sbjct: 886 PDLDRELGLDRDKLIRLAYLLGSDYTEGLPGVGPVVAMELL 926
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L+ + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG PA+K ST R
Sbjct: 60 RRISKLLFYGIKPVFVFDGGAPALKRSTIAER 91
>gi|195155670|ref|XP_002018724.1| GL25951 [Drosophila persimilis]
gi|194114877|gb|EDW36920.1| GL25951 [Drosophila persimilis]
Length = 1238
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 97 VTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 155
+ Q+ K+L+ + + MG S M + + L G+P + EAEAQCA LN L
Sbjct: 836 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCAFLNATEL 895
Query: 156 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+GSD
Sbjct: 896 THGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSD 954
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 248
Y+ G+ G+G +A +I+ S + AS G
Sbjct: 955 YTTGIHGIGAVTAMEILASFSTTLDASSPASSG 987
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCTPQLKRDTIARR 91
>gi|324509011|gb|ADY43797.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 534
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +W+ ++ + L + L+NKR+ +D W+ ++ + ++ K L ++R
Sbjct: 1 MGVTGMWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYNR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----- 115
R+LI I V D + QD +N+ +R G
Sbjct: 61 CRSLIEKGIEPIVVFDAVDDIAR---------------QDMQNIPLKKDRKRGTGIWAPE 105
Query: 116 --SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
+E I+E K L ++GV + E EAQCA L L GC + D D LFG
Sbjct: 106 LKTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLERRGLVHGCITRDFDYILFGGNN 165
Query: 174 VYRDIWLGERGY-----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 227
+Y+ + G G ++ MD I +L R+ LI ++L++G DY Q G+ G+G +
Sbjct: 166 LYQ-VEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLIAMSLMMGCDYYQKGIPGVGAVT 224
Query: 228 ACQIV 232
A +IV
Sbjct: 225 ALEIV 229
>gi|324508870|gb|ADY43740.1| Flap endonuclease GEN 1 [Ascaris suum]
Length = 524
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +W+ ++ + L + L+NKR+ +D W+ ++ + ++ K L ++R
Sbjct: 1 MGVTGMWEYMQKYVQPLDISSLRNKRIAVDGHIWLCEVMRGSVAHSSTARKPHLSTFYNR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----- 115
R+LI I V D + QD +N+ +R G
Sbjct: 61 CRSLIEKGIEPIVVFDAVDDIAR---------------QDMQNIPLKKDRKRGTGIWAPE 105
Query: 116 --SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
+E I+E K L ++GV + E EAQCA L L GC + D D LFG
Sbjct: 106 LKTEIMTKIEEIKCLLNAMGVRWMASKLEGEAQCAQLERRGLVHGCITRDFDYILFGGNN 165
Query: 174 VYRDIWLGERGY-----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPES 227
+Y+ + G G ++ MD I +L R+ LI ++L++G DY Q G+ G+G +
Sbjct: 166 LYQ-VEFGPGGKSIHDNILLLSMDYIGEELCVSRSCLIAMSLMMGCDYYQKGIPGVGAVT 224
Query: 228 ACQIV 232
A +IV
Sbjct: 225 ALEIV 229
>gi|198476637|ref|XP_002132415.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
gi|198137788|gb|EDY69817.1| GA25201 [Drosophila pseudoobscura pseudoobscura]
Length = 1236
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 97 VTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 155
+ Q+ K+L+ + + MG S M + + L G+P + EAEAQCA LN L
Sbjct: 834 LAQERKDLEIERNRQDRMGMSISQRMSTDCQELLRLFGIPYIVAPMEAEAQCAFLNATEL 893
Query: 156 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+GSD
Sbjct: 894 THGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLVGSD 952
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 248
Y+ G+ G+G +A +I+ S + AS G
Sbjct: 953 YTTGIHGIGAVTAMEILASFSTTLDASSPASSG 985
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCTPQLKRDTIARR 91
>gi|195454489|ref|XP_002074261.1| GK18419 [Drosophila willistoni]
gi|194170346|gb|EDW85247.1| GK18419 [Drosophila willistoni]
Length = 1247
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 9/222 (4%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 881 FGIPYIVAPMEAEAQCAFLNATELTNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRS 939
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S + S
Sbjct: 940 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSTATTVPSTQSICNQT 999
Query: 252 VKRAKNSKKEGWSFKCNNK---EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSA 308
V ++ W N+ S + + L P S V++AY +PK
Sbjct: 1000 VLETLTRFRDWWQAHKNSNLPPGSSARLSLRKKLKNIDLHEGFPSSAVVEAYLDPKV--- 1056
Query: 309 DSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
+ + + + F W KTD+ ++P I
Sbjct: 1057 --DDNRDAFTWGTPDVDSIREFARKSFGWTTSKTDDILMPVI 1096
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 119/265 (44%), Gaps = 38/265 (14%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ MI E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 915 RRDADEVTQSMITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFG 974
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V CY +D+ + R+ +I +A LLGSDY+ G+ G+GP +A +
Sbjct: 975 GTRVYKNMFNAAK-FVECYLANDLVSEFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALE 1033
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN--------- 281
++ D LQ K+ W+ NN ++ ++ + N
Sbjct: 1034 LLAEFPD---LQDF---------------KDWWTGVQNN---TIPKDADKNSAFRRRFRR 1072
Query: 282 --GTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPP 339
T L P +V DAY +P+ S D E + A L + W
Sbjct: 1073 GQATKLFLPPGFPDQRVADAYLHPEVDS-DPEPFQWGVP----DLAALRTFLSSQIGWSW 1127
Query: 340 EKTDEYILPKIAERDLRRFANLRAN 364
E+TDE ++P I + + R +AN
Sbjct: 1128 ERTDEVLVPVIRDMNRREKEGTQAN 1152
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVLQPCARPIKIETLNKKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ + +FV DG P +K T R
Sbjct: 61 RVCKLLFIGIKPVFVFDGGAPVLKRQTINNR 91
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 30/263 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV +L D+++ K+ L L+ K+V ID + Q + +P L
Sbjct: 1 MGV-DLADLVKDVKRELSFSELKGKKVSIDGYNALYQFLAAIR--QPDGTPLMDSHGRIT 57
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMS 108
L GLF+R ++ I+V DG P K RR E + K+ K+
Sbjct: 58 SHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIE 117
Query: 109 SLRRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
LR+ + + M++E+K L ++G+P ++ E EA+ A LN+ S D D
Sbjct: 118 ELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYD 177
Query: 166 IFLFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGS 214
LFGA+ + R++ + G+R Y+ + E+ + E +KLG R LI +++L+G+
Sbjct: 178 SILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGT 237
Query: 215 DYS-QGVRGLGPESACQIVKSVG 236
DY+ G++G+GPE A +I+K G
Sbjct: 238 DYNPDGIKGIGPERALKIIKKYG 260
>gi|5689765|emb|CAB52135.1| Nucleotide excision repair protein [Drosophila melanogaster]
Length = 378
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 12 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 70
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV------GDNVVLQRIA 245
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S G + Q +
Sbjct: 71 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSGQDANGPGICNQSVL 130
Query: 246 SEGLSFVKRAKNSKKEGW-SFKCNNKEESLNQEINVNG--TDHSLQRETPFSQVIDAYSN 302
+ F ++ W + KC+N + + + + L P V++AY
Sbjct: 131 QTLIKF--------RDWWQAHKCSNLPPGSSARLALRKKLKNIELHEGFPSGAVVEAYLA 182
Query: 303 PK------CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 353
P +S + V + + + F W KTD+ ++P KI E+
Sbjct: 183 PTIDDNRDAFSWGTPDVESI-----------REFTRKSFGWTTSKTDDILMPVMKKINEK 231
Query: 354 DLR 356
++
Sbjct: 232 KIQ 234
>gi|390364842|ref|XP_790336.3| PREDICTED: DNA repair protein complementing XP-G cells-like
[Strongylocentrotus purpuratus]
Length = 375
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 15/184 (8%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M ++K + G+P +E +EAEAQCA L+L + +G + D DI+LFG R V+R
Sbjct: 103 TMYADSKEMLQCFGIPYIESPQEAEAQCAFLDLTNQTEGTITDDGDIWLFGGRRVFRHF- 161
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
++ + + DIER L R LI LA L+GSDY+ G++G+G SVG
Sbjct: 162 FSKKKDPEYFRVGDIERHLLLDRKKLINLAYLVGSDYTLGIQGIG---------SVGAME 212
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
+L GL +K K+ WS + SLN L E P + A
Sbjct: 213 ILAEFKGHGLKTLKDFKS----WWSRTQDQGVPSLNA-TRSKWCKLVLPDEFPNPLIAKA 267
Query: 300 YSNP 303
Y+NP
Sbjct: 268 YTNP 271
>gi|195116755|ref|XP_002002917.1| GI10377 [Drosophila mojavensis]
gi|193913492|gb|EDW12359.1| GI10377 [Drosophila mojavensis]
Length = 1255
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 40/248 (16%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN + +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 878 FGIPYIVAPMEAEAQCAFLNAVGITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 936
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN------------- 238
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S +
Sbjct: 937 EQIEKTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILASFSTSTPNTELSPNSPSS 996
Query: 239 -VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVI 297
V +Q + S F + + K + + L + N+ L P S V+
Sbjct: 997 GVSMQSVLSTLEKFREWWQAHKSSNLPIGSSARLSLLKKLKNI-----ELHEGFPSSSVV 1051
Query: 298 DAYSNPK------CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP--- 348
+AY PK +S S V + + + F W KTD+ ++P
Sbjct: 1052 EAYLTPKVDDNRDAFSWGSPDVESI-----------REFSRKSFGWTTSKTDDILMPVMK 1100
Query: 349 KIAERDLR 356
KI E+ ++
Sbjct: 1101 KINEKKIQ 1108
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + ID+S W+ Q ++ S + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAIDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGGVPQLKRDTIARR 91
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 15/230 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + L G+P + EAEAQCA L L +G + DSD+FLFG+ V+++++
Sbjct: 884 MISQIMVLLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFKNMF- 942
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ D+ R+LG R+ LI LA LLGSDY G+ G+GP A +I++
Sbjct: 943 NQSKTVECFIAGDLTRELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEEFP---- 998
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
++GL + + G +N+ + + H L+ + P + V DAY
Sbjct: 999 ----GADGLHKFREWWVKVQSGKDKPEDNQSAFRKRFKKKFKSLH-LEDDWPNAVVRDAY 1053
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
+P +D + QH Q W +K D+ +LP I
Sbjct: 1054 YHPTVDESDEPFKWGLPDLDALQH-----FLGQELGWGQDKVDDLLLPII 1098
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW ++ + + L ++ K + ID S W+ Q Q +K R + L G
Sbjct: 1 MGVKGLWKLVGPVGRPVLLETVEGKTMAIDSSIWLYQFQATMRDKDGRALVNAHIL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSG 94
R+ L+ +FV DG PAIK +T R++ SG
Sbjct: 60 RRICKLLFYGIKPVFVFDGGAPAIKKATITERKKRKSG 97
>gi|340376739|ref|XP_003386889.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Amphimedon queenslandica]
Length = 739
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P LE EAEAQC+ L SL G + D+D+FLFG VYR ++ G V Y
Sbjct: 460 FGLPYLESPSEAEAQCSTLESLSLTQGTITDDNDVFLFGGMNVYRHMFTGSHD-VEYYRN 518
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
DIE LG RN+LI LA LLG DY+ G+ G+G +A ++V+
Sbjct: 519 ADIETLLGLDRNNLIILAYLLGCDYTDGIEGVGVVNALELVQ 560
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGVK+LW ILE + + L+ + + +D+S W+ Q ++ + + K L LF+
Sbjct: 1 MGVKDLWKILEPSGRAINPETLKGQILAVDVSIWLNQAIKGARDHHGNEIPKPHLLVLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST--YRRR 90
R+ L+ +FV DG P +K T RRR
Sbjct: 61 RICKLLFYQIRPVFVFDGPPPPLKTKTLELRRR 93
>gi|332029719|gb|EGI69598.1| DNA repair protein complementing XP-G cells-like protein
[Acromyrmex echinatior]
Length = 417
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Query: 106 KMSSLRRNMG------SEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
K L R++G + S IK +A+ L G+P + EAEAQCA L L DG
Sbjct: 18 KQEELARDIGKFERQATNISEQIKTDAQDLLRLFGIPYIIAPMEAEAQCAYLEQIKLTDG 77
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ DSDI+LFG + VY++ + ++ + DI+ RN LI LALL+GSDY+
Sbjct: 78 TITDDSDIWLFGGQCVYKN-FFNHNKRMLRFRACDIQHHFKLNRNQLIQLALLVGSDYTT 136
Query: 219 GVRGLGPESACQIVKSV---GDNVV 240
GV G+GP +A +I+ + GDNV+
Sbjct: 137 GVAGVGPVTALEILAAFPADGDNVL 161
>gi|300120755|emb|CBK20997.2| unnamed protein product [Blastocystis hominis]
Length = 548
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L+L L DG S+DSD+F FG +T+YR+ ++ R +V Y++
Sbjct: 455 FGIPYVFAPGEAEAQCAFLDLMELVDGVISNDSDVFAFGGKTMYRNFFVDNR-FVEVYKI 513
Query: 192 DDIERKLGFGRNSLITLALLLGSDY 216
+DIE++ G RN +I LALLLG DY
Sbjct: 514 EDIEKERGLNRNRIIELALLLGCDY 538
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L +G + DSD+FLFG V+++++ + V C+ +
Sbjct: 917 FGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMF-NQSKTVECFLL 975
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV-GDNVV 240
D+ R+LG RN L+ LA LLGSDY++G+ G+GP A +++K GD+ +
Sbjct: 976 SDLARELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKEFHGDDAL 1025
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LWD+L + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWDLLSPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRALVNA-HLVGFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ 99
R+ L+ +FV DG PA+K +T R++ SG+ +
Sbjct: 60 RRICKLLFYGIKPVFVFDGGAPALKRATISERKKKKSGAAASH 102
>gi|242019297|ref|XP_002430098.1| DNA excision repair protein, putative [Pediculus humanus corporis]
gi|212515179|gb|EEB17360.1| DNA excision repair protein, putative [Pediculus humanus corporis]
Length = 1052
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +A+AL GVP + EAEAQCA L++ L +G + DSDI+LFG VY++ +
Sbjct: 667 MYSDAQALLKLFGVPYIVAPMEAEAQCAALDILGLTEGTITDDSDIWLFGGTVVYKN-FF 725
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ +V+ Y +I++ R LI LA+L+GSDY+ G+ G+GP +A +I+
Sbjct: 726 NQKKHVLEYTSLNIQKNFKLNREDLIRLAMLVGSDYTLGLTGIGPVTAMEIL 777
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE + +PL L K + +D+S W+ Q ++ ++ +Y + L H
Sbjct: 1 MGVHGLWKLLEPSGQMVPLECLAGKVLAVDVSIWLHQAIKGMHDTYGAPVAAAHIIILLH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------KNLDKMSSLR 111
RL L+ +FV DG +PA+K ST R N + KNL K ++R
Sbjct: 61 RLCKLLFYKIKPVFVFDGGVPALKHSTMAARKNQTGAAKLEAQKVREKLIKNLLKHEAVR 120
Query: 112 RNMGSEFSCMIKEAKALGL-SLGVP 135
+ + +E S + ALGL S +P
Sbjct: 121 QILANESS-----SAALGLNSFALP 140
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 2509 FGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLKNMF-NQSKTVECFLL 2567
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
D+ER+LG R+ LI LA LLGSDY+ G+ G+GP A +++K
Sbjct: 2568 SDLERELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLK 2609
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L+ + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1631 MGVKSLWSLLDPVGRPVLLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 1689
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ 99
R+ L+ +FV DG P +K +T R++ SG+ ++
Sbjct: 1690 RRICKLLFYGIKPVFVFDGGAPVLKRATIAERKKKKSGAALSH 1732
>gi|195473066|ref|XP_002088817.1| GE18773 [Drosophila yakuba]
gi|194174918|gb|EDW88529.1| GE18773 [Drosophila yakuba]
Length = 1237
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 94 GSEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 152
S + Q+ K L+ + + MG S M + + L G+P + EAEAQCA LN
Sbjct: 832 ASNLAQERKELEIERNRQDRMGMSISQRMSIDCQELLRLFGIPYIVAPMEAEAQCAFLNA 891
Query: 153 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLL 212
L G + DSDI+LFG RTVY++ + + +V+ + + IE+ R LI LA L+
Sbjct: 892 TDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRAEQIEQTFNCNRGKLIQLACLV 950
Query: 213 GSDYSQGVRGLGPESACQIVKS 234
GSDY+ G+ G+G +A +I+ S
Sbjct: 951 GSDYTTGIHGIGAVTALEILAS 972
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|74141150|dbj|BAE35888.1| unnamed protein product [Mus musculus]
Length = 644
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 498 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 556
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I+
Sbjct: 557 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEIL 608
>gi|78706854|ref|NP_001027232.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
gi|10728671|gb|AAG22424.1| mutagen-sensitive 201, isoform A [Drosophila melanogaster]
Length = 1257
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 891 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 949
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 950 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 992
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCI---------------------DLSCWIVQL- 38
MGV LW ++E C K +P+ L+ K + + D+S W+ Q+
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFSPPNEILADWSTFRPADISIWLHQVV 60
Query: 39 QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+ + L GLFHRL L+ +F+ DG +P +K T RR
Sbjct: 61 KGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 112
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAEAQCA LN LC G S DSD FGA+ V+++ + G Y
Sbjct: 696 FGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGAKRVFKNFYSG--NVFEVYVA 753
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGDNVVLQRIASEG 248
D I +LG GRN + LA+L G DY+ GVRG+G +A +++K + D +R A+
Sbjct: 754 DRILHELGLGRNEIALLAILCGCDYTPGVRGIGVVNALEVIKAFPTFDDLYEFRRWATSD 813
Query: 249 LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP---FSQVIDAYSNPKC 305
+++ K KE +N ++ + RE S V+ + PK
Sbjct: 814 CDITTVTQDT----CPLKQAYKESHVNYRMHWSFGSDFPNREAYNLLLSPVVSSTFKPKW 869
Query: 306 YSADSEAVHRVLAQH 320
+ D + + R +++H
Sbjct: 870 RTPDYDGIMRFMSKH 884
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH- 59
MG+K LWD + + + + L+ K+V ID S WI + R D + G+F
Sbjct: 1 MGIKGLWDAVAAAGVSSRVELLRGKKVAIDASFWISHCLASEAALRRGND---IYGVFFL 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ IFV DG P K T
Sbjct: 58 RICYLLEKRIYPIFVFDGRTPGAKRRT 84
>gi|5758316|gb|AAD50780.1|AF162793_1 XPG variant [Drosophila melanogaster]
Length = 1257
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 891 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 949
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 950 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 992
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCI---------------------DLSCWIVQL- 38
MGV LW ++E C K +P+ L+ K + + D+S W+ Q+
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFSPPNEILADWSTFRPADISIWLHQVV 60
Query: 39 QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+ + L GLFHRL L+ +F+ DG +P +K T RR
Sbjct: 61 KGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 112
>gi|5758314|gb|AAD50779.1|AF162792_1 XPG [Drosophila melanogaster]
Length = 1236
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 971
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|78706850|ref|NP_001027230.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
gi|78706852|ref|NP_001027231.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|5051952|gb|AAD38375.1|AF144092_1 nucleotide excision repair protein MUS201 [Drosophila melanogaster]
gi|7297419|gb|AAF52678.1| mutagen-sensitive 201, isoform B [Drosophila melanogaster]
gi|28380312|gb|AAO41169.1| mutagen-sensitive 201, isoform C [Drosophila melanogaster]
Length = 1236
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 971
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|432852332|ref|XP_004067195.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Oryzias latipes]
Length = 1078
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP L EAEAQCA L+ G + DSD++LFG R VY++ +
Sbjct: 689 MYLESQELLRLFGVPFLVAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKN-FF 747
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ YV Y+ D++ +LG R +I LA LLGSDY++GV G+G + +I
Sbjct: 748 SQNKYVEHYQYSDLQNQLGLDRAKMINLAYLLGSDYAEGVPGVGYVTGMEI--------- 798
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL +K+ + WS NK + + D ++++ ++ +
Sbjct: 799 LNEFPGPGLEPLKQF----SQWWSQAQENK------RLTADPQDTKVKKKLRALKLQSGF 848
Query: 301 SNPKCYSADSE-AVHRVLAQHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAE 352
NP A E AV + + +L + C F W KT+E + P + +
Sbjct: 849 PNPAVAQAYLEPAVDPSCSSFSWGRPQLDVIKEFCLSRFGWSSRKTEEILQPVVKQ 904
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK 106
R+ L+ +FV DG P +K T +R E+T++ K ++
Sbjct: 61 RICKLLFFRIRPVFVFDGDAPLLKKQTLAQRRQRKEELTRESKQTNE 107
>gi|328791064|ref|XP_393585.4| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Apis mellifera]
Length = 1094
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 115 GSEFSCMIK-EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
G + S I+ EA+ L G+P L EAEAQCA L L DG + DSDI+LFG +
Sbjct: 724 GIDISDQIRIEAQELLQLFGIPYLVAPMEAEAQCAYLEQIHLTDGTITDDSDIWLFGGQC 783
Query: 174 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
VY++ + + V+ + DI+ RN +I LALL+GSDY+ G+ G+GP +A +I+
Sbjct: 784 VYKNFFDNNKK-VLEFRACDIQHYFKLTRNEMIRLALLVGSDYTTGLTGIGPVTALEILA 842
Query: 234 ---SVGDNVV 240
S GD+++
Sbjct: 843 AFPSEGDDLL 852
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L + K +PL L+ K + ID+S WI Q LQ + L GLFH
Sbjct: 1 MGVYGLWRLLNATGKQVPLETLEGKVLAIDISIWIHQVLQGYQDRFGNPKPNAHLIGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST--YRRRLNSGSEV------TQDDKNLDKMSSLR 111
R+ L+ IFV DG +P +K T RR+ S ++ T+ NL K S+++
Sbjct: 61 RICKLLYYKIKPIFVFDGGVPMLKKDTIALRRKQKSMAKNKAQQMRTELINNLIKHSTVK 120
Query: 112 RNMGSEFSCMIKEAKALGLSL 132
+ +E + E+ + SL
Sbjct: 121 TALNTEMQNITNESSEVITSL 141
>gi|5712619|gb|AAD47568.1|AF125578_1 DNA repair endonuclease [Drosophila melanogaster]
Length = 1236
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 928
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 971
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|195577623|ref|XP_002078668.1| GD23543 [Drosophila simulans]
gi|194190677|gb|EDX04253.1| GD23543 [Drosophila simulans]
Length = 1235
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 869 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 927
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 928 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 970
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|50551183|ref|XP_503065.1| YALI0D20240p [Yarrowia lipolytica]
gi|49648933|emb|CAG81257.1| YALI0D20240p [Yarrowia lipolytica CLIB122]
Length = 1115
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCA-LLNLESLCDGCFSSDSDIFLFGART---VY 175
M+ E + L G+P + EAEAQCA L+NL+ L DG + DSD+FLF + V+
Sbjct: 818 TMVDECQQLLQLFGIPFITAPTEAEAQCATLVNLD-LVDGVITEDSDVFLFSSNPRMRVF 876
Query: 176 RDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ + + YV CY+ +IE+ L R L+ LALLLGSDY+ G+ G+GP SA +I+
Sbjct: 877 KNFFNSNK-YVECYKTGEIEQTLNLERKDLVDLALLLGSDYTDGLPGIGPVSAMEIL 932
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+ LW+I++S + + + L R+ +D S WI Q + + L G F R
Sbjct: 1 MGVRGLWEIVQSTARPVKVETLGGNRLAVDASIWIYQFLKTTRGAGKKNAHLV--GFFRR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLST 86
+ L+ L +FV DG P +K T
Sbjct: 59 ILKLLFLGIKPVFVFDGVAPELKRKT 84
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 816 RRDADEISQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 875
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V C+ +D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 876 GTRIYKNMF-NQSKFVECFLSNDLEKEYALDRVKLIQFAHLLGSDYTEGIPGVGPVTALE 934
Query: 231 IV 232
I+
Sbjct: 935 II 936
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K T R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQTIAAR 91
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC
10500]
Length = 1128
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 817 RRDADEVSQIMVSECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFG 876
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
VY++++ + +V C+ D+E++ R LI A LLGSDY++G+ G+GP +A +
Sbjct: 877 GTRVYKNMF-NQSKFVECFLSSDLEKEYALDRIKLIQFAHLLGSDYTEGIPGVGPVTALE 935
Query: 231 IV 232
I+
Sbjct: 936 II 937
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +++ C + + L L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTVVQPCARPVKLETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNAHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPILKRQT 87
>gi|195397917|ref|XP_002057574.1| GJ18024 [Drosophila virilis]
gi|194141228|gb|EDW57647.1| GJ18024 [Drosophila virilis]
Length = 1238
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN + +G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 885 FGIPYIVAPMEAEAQCAFLNAVGITNGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 943
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R+ LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 944 EQIEQTFNCSRDKLIQLACLVGSDYTTGIHGIGAVTALEILAS 986
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 24/198 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ S + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKVLAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------KNLDKMSSLR 111
RL L+ +F+ DG +P +K T RR +++ + ++L K ++
Sbjct: 61 RLCKLLYYRVRPVFIFDGGVPQLKRDTIARRQQQRGKISNEADRIQALLLQSLAKEKVVQ 120
Query: 112 RNMGSEFSCMIKEAKALGLSLG--------------VPCLEGVEEAEAQCALLNLESLCD 157
+ +G+ ++K ++ +P + E+ C L N E
Sbjct: 121 QALGTNAELLLKSPSKRAVTGKSSKDDEDDLFKLPELPEASAAQIGESDCELDNQE-FTG 179
Query: 158 GCFSSDSDIFLFGARTVY 175
G +SDS AR Y
Sbjct: 180 GNTTSDSSFDESTARHTY 197
>gi|195339243|ref|XP_002036229.1| GM16947 [Drosophila sechellia]
gi|194130109|gb|EDW52152.1| GM16947 [Drosophila sechellia]
Length = 1108
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 742 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVMEFRA 800
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 801 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 843
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT-DKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q+ + + T L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSTLSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTITRR 91
>gi|194760687|ref|XP_001962569.1| GF15526 [Drosophila ananassae]
gi|190616266|gb|EDV31790.1| GF15526 [Drosophila ananassae]
Length = 1237
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 870 FGIPYIVAPMEAEAQCAFLNAADLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRS 928
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 929 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 971
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ S + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDSKGSALNNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKRDTIARR 91
>gi|194863176|ref|XP_001970313.1| GG10553 [Drosophila erecta]
gi|190662180|gb|EDV59372.1| GG10553 [Drosophila erecta]
Length = 1237
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + + +V+ +
Sbjct: 871 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKN-FFAQNKHVLEFRA 929
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 930 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 972
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E C K +P+ L+ K + +D+S W+ Q ++ + L GLFH
Sbjct: 1 MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ +F+ DG +P +K T RR
Sbjct: 61 RLCKLLYYRVRPVFIFDGCVPQLKKDTIARR 91
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 25/253 (9%)
Query: 1 MGVKNLWDILE-----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----------NKSY 45
MG++ L ++E + K L + H NK + ID S + Q N S
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRL-IQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSG 59
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ---- 99
+ L GL ++ L IFV DG P K RR+ +E+ Q
Sbjct: 60 EVTS---HLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAE 116
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
++ NL++ L R K+A+ L +LG+P + EAEAQC + E +C+G
Sbjct: 117 EEGNLERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
SSD D+ FG+ + R++ G +V ++ + ++LGF + + L +L G DY+
Sbjct: 177 ASSDLDVLAFGSPCLIRNLAQGGDREIVEINLNTVLKELGFSYDEFLDLCILCGCDYANS 236
Query: 220 VRGLGPESACQIV 232
+ G+GP++A +++
Sbjct: 237 LEGIGPKTAYKLI 249
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 21/248 (8%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + G+P + EAEAQCA L L DG + DSD+FLFG + VY++++
Sbjct: 742 MITQIMTMLRLFGIPYITAPMEAEAQCAELVTLKLVDGIITDDSDVFLFGGQRVYKNMF- 800
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V + + D+ R LG +++LI LA LLGSDY +G+ G+GP A ++
Sbjct: 801 NQSKTVEGFALADLTRDLGLDQDALIRLAYLLGSDYVEGLPGVGPVVAMEL--------- 851
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
LQ + + + +K + K + + + D L + P S V DAY
Sbjct: 852 LQEFPGKDGLYKFKDWWTKVQAGKDKGEDNKSKFRKSFKKKFKDLYLPSDWPNSAVQDAY 911
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
+P S++ L L Q W K DE +LP I + N
Sbjct: 912 YHPIVDSSEEP-----FKWGLPDLDALRDFLNQELGWGKAKVDENLLPIIQK------MN 960
Query: 361 LRANTLAL 368
R+ +AL
Sbjct: 961 KRSQAMAL 968
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +L + + L ++ K + ID S WI Q Q +K + L G
Sbjct: 1 MGVKSLWSLLSPVGRPIMLETMEGKSLAIDSSIWIYQFQATMRDKDGHALINAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P +K ST R
Sbjct: 60 RRISKLLFYGIKPVFVFDGGAPTLKRSTLNER 91
>gi|396498478|ref|XP_003845243.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
gi|312221824|emb|CBY01764.1| similar to flap structure-specific endonuclease [Leptosphaeria
maculans JN3]
Length = 935
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 95/218 (43%), Gaps = 41/218 (18%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID S W+ Q+Q P LR ++RL LIAL+ +FV DG
Sbjct: 34 RIAIDTSIWLFQIQASKGGTNPA-----LRTFYYRLLRLIALSIHPVFVFDGP----NKP 84
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
++R +G V + L AK L G P EAEA
Sbjct: 85 PFKRNKRTGPNVASIPEFL--------------------AKQLLKQFGFPIHLAPGEAEA 124
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIERK--- 197
+CALL E + D S D D +FG+ R+ W E+ +V Y D IE K
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITLRN-WSPEKSGNTPTHVNVY--DAIETKNGP 181
Query: 198 LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 182 SGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|353238841|emb|CCA70774.1| related to RAD2-structure-specific nuclease of the nucleotide
excision repairosome [Piriformospora indica DSM 11827]
Length = 1153
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 43/276 (15%)
Query: 96 EVTQDDKNLDKMSS-LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
E+ Q+ K L++ L+R+ M+ + L G+P + EAEAQCA L
Sbjct: 753 EIDQEIKQLNQARKVLQRDSEEITQQMVSQIMMLLRLFGIPYITAPMEAEAQCAKLLSLG 812
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
L +G + DSD+FLFGA V+++++ + V C+ D++R+LG + LI LA LLGS
Sbjct: 813 LVEGVITDDSDVFLFGATRVFKNMF-NQSKTVECFLAADLQRELGLDQEKLIRLAYLLGS 871
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESL 274
DY G+ G+GP A +I+ + + S ++ KE W + +S
Sbjct: 872 DYVDGLEGVGPVVAMEILNE------FETAGKQEDSLLRF-----KEWW-----RRVQSG 915
Query: 275 NQEINVNGTDHS-----------LQRETPFSQVIDAYSNPKCYSADSE---AVHRVLAQH 320
N GT+ L + P V DAY +P ++ + + A
Sbjct: 916 QDTENDTGTEFRKRFKKKFKNLHLAGDWPNPAVRDAYLHPTVDESEEAFKWGLPDLDALR 975
Query: 321 LFQHARLHQVCAQFFQWPPEKTDEYILP---KIAER 353
F H LH V A KTDE +LP K+ ER
Sbjct: 976 TFLHEELHWVQA--------KTDELLLPIIRKMGER 1003
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKQLWKLLSPVGRPVLLETMEGKALAIDSSIWIYQFQATMRDKEGRGLVNAHLL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ 99
R+ L+ +FV DG PA+K ST R+R +G+ ++
Sbjct: 60 RRICKLLFYGIKPVFVFDGGAPALKRSTIVERKRRKAGAAISH 102
>gi|58258651|ref|XP_566738.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. neoformans JEC21]
gi|57222875|gb|AAW40919.1| single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1323
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 946 SMIAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIF 1005
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 1006 -NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 1057
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + + ++ KR+ ID S W+ Q Q +K R + L G
Sbjct: 65 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVL-GFL 123
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG PA+K ST R+R +G+
Sbjct: 124 RRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 162
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 849 FGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLKNMF-NQSKTVECFLL 907
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
D+ER+LG R+ L+ LA LLGSDY+ G+ G+GP A +++
Sbjct: 908 SDLERELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELL 948
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +LE + + L ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWQLLEPVGRPVLLETMEGKSMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGS 95
R+ L+ +FV DG PA+K+ST R N S
Sbjct: 60 RRICKLLFYGIKPVFVFDGGAPALKMSTIAERKNKKS 96
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+
Sbjct: 816 FGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLKNMF-NQSKTVECFLT 874
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
D+ER+LG R+ L+ LA LLGSDY++G+ G+GP A +++
Sbjct: 875 TDLERELGLDRDKLVRLAYLLGSDYTEGLPGVGPVVAMELL 915
>gi|134106579|ref|XP_778300.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50261003|gb|EAL23653.1| hypothetical protein CNBA3000 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1323
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
MI + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 946 SMIAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNIF 1005
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 1006 -NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 1057
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + + ++ KR+ ID S W+ Q Q +K R + L G
Sbjct: 65 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVL-GFL 123
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG PA+K ST R+R +G+
Sbjct: 124 RRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 162
>gi|189192965|ref|XP_001932821.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978385|gb|EDU45011.1| flap structure-specific endonuclease [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 936
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID S W+ Q+Q P LR ++RL LIAL IFV DG
Sbjct: 34 RIAIDTSIWLFQIQASKGGTNPA-----LRTFYYRLLRLIALAIHPIFVFDGP----NKP 84
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
++R +G V + L AK L G P EAEA
Sbjct: 85 PFKRNKRTGPNVASIPEFL--------------------AKQLLKQFGYPIHLAPGEAEA 124
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIERK--- 197
+CALL E + D S D D +FG+ R+ W E+ +V Y D +E K
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITIRN-WSPEKSGNTPTHVNVY--DAVETKNGQ 181
Query: 198 LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +A++ G DY +G+ G GP++AC+ K+
Sbjct: 182 SGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|449298336|gb|EMC94351.1| hypothetical protein BAUCODRAFT_73871 [Baudoinia compniacensis UAMH
10762]
Length = 1348
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 122/263 (46%), Gaps = 27/263 (10%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
RR+ M+ E + L G+P + EAEAQCA L L DG + DSD FLFG
Sbjct: 969 RRDADEVTHIMVTECQQLLRLFGLPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDCFLFG 1028
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
+Y++++ + +V CY D+E++ R LI +A LLGSDY++G+ +GP +A +
Sbjct: 1029 GTRIYKNMF-NQAKFVECYLSSDLEKEFDLTRQKLIAVAHLLGSDYTEGLPSVGPVTALE 1087
Query: 231 IVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRE 290
I +G+ V LS K N + K +K+ + ++ N T L
Sbjct: 1088 I---LGEFV--------SLSDFKDWWNGVQMNIIPKDVDKDNAFRKKFRKNATKLFLPPA 1136
Query: 291 TPFSQVIDAYSNPKCYSADSE---AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 347
P +V AY P+ S V + A F A + W E+TDE ++
Sbjct: 1137 FPDKRVDVAYETPEVDSDPQPFQWGVPDLDALRSFLMATIG--------WSQERTDEVLV 1188
Query: 348 PKIAERDLRRFAN--LRANTLAL 368
P I RD+ R A+ +AN A
Sbjct: 1189 PVI--RDMNRRADEGTQANITAF 1209
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW IL+ C + + + L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWQILQPCARPIKIETLNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG PA+K +T
Sbjct: 61 RICKLLFYGIKPVFVFDGGAPALKRAT 87
>gi|321251586|ref|XP_003192115.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
gattii WM276]
gi|317458583|gb|ADV20328.1| Single-stranded DNA specific endodeoxyribonuclease, putative
[Cryptococcus gattii WM276]
Length = 1263
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I
Sbjct: 885 ASMVAQIQTLLRHFGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGVQCFKNI 944
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ + Y C+ + D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 945 F-NDAKYAECFLLADVERELMLTRERLISLAYFLGSDYTLGLPGIGPVMGLEIL 997
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + + ++ KR+ ID S W+ Q Q +K R + L G
Sbjct: 1 MGVKGLWSLLNPVARPVQIESMEGKRLAIDSSIWLYQFQATMRDKDGRVLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG PA+K ST R+R +G+
Sbjct: 60 RRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRKKTGA 98
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+R+ S ++KE + L LG P + EAEAQCA L L G + DSD +LFG
Sbjct: 576 QRHAASLNDVLVKECQELLALLGQPYVVSPGEAEAQCAWLEQHGLSQGVVTDDSDAWLFG 635
Query: 171 ARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQ 230
A+ +YR ++ +R + + M D+ + G R ++ ALL GSDY+ GV G+GP +A +
Sbjct: 636 AQCIYRHLFRPDR-RPMRFLMKDLASQFGLDRQKMVAFALLCGSDYTTGVNGVGPVTAME 694
Query: 231 IVKSV-GDNVVLQRIASEGLSFVKRAKNSK 259
++ GD+ V + E +++++AK K
Sbjct: 695 VLSEFKGDDAV--SLLEEFRTWLEKAKEEK 722
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW ++E+ K + L L+NK + +D+S W+ Q ++ + L GL
Sbjct: 4 MGVHGLWQVVEAAGKPIALETLENKVLAVDVSLWLHQAVKGFRDAQGSPVANAHLLGLLQ 63
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R
Sbjct: 64 RVCKLLFYGVKPVFVFDGGVPQLKKQTLAAR 94
>gi|393905975|gb|EFO24532.2| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 14/238 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV ++W+ ++ + + + L+NKR+ ID W+ ++ + ++ K +L + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLSTFYTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL-RRNMGSEFS 119
R+L+ I V DG R N VT K + S + E
Sbjct: 61 CRSLLEEGVEPIVVFDGI-------DEEERANVDYGVTSMRKVRKRGSKYWTSELKQEMV 113
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++E K L S+GV +E E EAQCA L L GC + D D LFG +Y+ +
Sbjct: 114 PKVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQ-VE 172
Query: 180 LGERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIV 232
G G ++ MD ++ L R+ LI + +++G DY+Q G+ G+G +A +IV
Sbjct: 173 FGFSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIV 230
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG V ++++ + V C+ +
Sbjct: 852 FGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKNMF-NQSKTVECFLL 910
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
D+ R+LG R LI LA LLGSDY++G+ G+GP A +++ S+GL
Sbjct: 911 SDLGRELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFS--------GSDGLHK 962
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 311
+ + G +NK + + + L + P V DAY +P S++
Sbjct: 963 FREWWRKVQSGRDTLEDNKSKFRKRFKKRF-KELYLPEDWPNPTVRDAYYHPTVDSSEEP 1021
Query: 312 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
L L Q W EK D+ +LP I
Sbjct: 1022 -----FKWGLPDLDALRQFFNAELGWAQEKVDDLLLPVI 1055
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW +LE + +PL ++ K + ID S WI Q Q +K R + L G
Sbjct: 1 MGVKSLWSLLEPVGRPVPLETMEGKAMAIDSSIWIYQFQATMRDKEGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGS 95
R+ L+ +FV DG PA+K +T R N S
Sbjct: 60 RRISKLLFYGIKPVFVFDGGAPALKRTTISERKNKKS 96
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ K L G+P ++ EAEAQC+ LN + CD S DSD+ +F +T+ ++ +
Sbjct: 939 MNEDIKLLLDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FF 997
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGD 237
++ V YE + IERKLG ++ LI +++L G DY+ GV G+G +A +IVK + D
Sbjct: 998 NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGVGIVNALEIVKAFPTFDD 1057
Query: 238 NVVLQRIASEGL 249
+L+ I S L
Sbjct: 1058 LKILKEIVSNPL 1069
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ K L G+P ++ EAEAQC+ LN + CD S DSD+ +F +T+ ++ +
Sbjct: 957 MNEDIKLLLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FF 1015
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK---SVGD 237
++ V YE + IERKLG ++ LI +++L G DY+ GV G+G +A ++VK + D
Sbjct: 1016 NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGIGIVNALEVVKAFPTFDD 1075
Query: 238 NVVLQRIASEGL 249
+L+ I S L
Sbjct: 1076 LKILKEIVSNPL 1087
>gi|384249049|gb|EIE22531.1| hypothetical protein COCSUDRAFT_6698, partial [Coccomyxa
subellipsoidea C-169]
Length = 262
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 122/263 (46%), Gaps = 36/263 (13%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L+ L DG + D+D+FLFGA+ VYR I R YV Y
Sbjct: 12 FGLPYIIAPSEAEAQCAWLDANGLVDGVVTDDNDVFLFGAKHVYRHI-FENRKYVEEYRT 70
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQR-----IAS 246
+D+ER+LG ++ LI LALLLGSDY++GV G+G +A + VK+ L++ +
Sbjct: 71 EDVERELGLDQDGLIALALLLGSDYTEGVAGIGIVNAIETVKAFQKEDGLRKFREWVMNP 130
Query: 247 EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCY 306
+ + + + ++ E + NV + L P +VI+AY K
Sbjct: 131 DEAELLAAQEADPPDPYAGDDPEIAEYKRKHRNVR-KNWELPASFPDIRVIEAYR--KAS 187
Query: 307 SADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR----- 356
DS + F H R L C + F W +K DE + P + D R
Sbjct: 188 VDDS--------KERFTHGRPDAQLLRAFCKEKFNWNADKVDEILEPVLKAYDARQAQLT 239
Query: 357 ---------RFANLRANTLALGV 370
RFA +++ LA V
Sbjct: 240 MDNFLSFNERFAKIKSKRLAKAV 262
>gi|330914144|ref|XP_003296510.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
gi|311331271|gb|EFQ95374.1| hypothetical protein PTT_06636 [Pyrenophora teres f. teres 0-1]
Length = 934
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID S W+ Q+Q P LR ++RL LIAL IFV DG
Sbjct: 34 RIAIDTSIWLFQIQASKGGTNPA-----LRTFYYRLLRLIALAIHPIFVFDGP----NKP 84
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
++R +G V + L AK L G P EAEA
Sbjct: 85 PFKRNKRTGPNVASVPEFL--------------------AKQLLKQFGYPIHLAPGEAEA 124
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIERK--- 197
+CALL E + D S D D +FG+ R+ W E+ +V Y D +E K
Sbjct: 125 ECALLQREGIVDAVLSEDVDTLMFGSGITIRN-WSPEKSGNTPTHVNVY--DAVETKNGQ 181
Query: 198 LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +A++ G DY +G+ G GP++AC+ K+
Sbjct: 182 SGLDREGMILVAMMSGGDYVPEGIPGCGPKTACEAAKA 219
>gi|312073479|ref|XP_003139538.1| hypothetical protein LOAG_03953 [Loa loa]
Length = 498
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 14/239 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV ++W+ ++ + + + L+NKR+ ID W+ ++ + ++ K +L + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISALRNKRIAIDGHTWLCEVLRGSVAHCSTARKPYLSTFYTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL-RRNMGSEFS 119
R+L+ I V DG R N VT K + S + E
Sbjct: 61 CRSLLEEGVEPIVVFDGI-------DEEERANVDYGVTSMRKVRKRGSKYWTSELKQEMV 113
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD-I 178
++E K L S+GV +E E EAQCA L L GC + D D LFG +Y+ +
Sbjct: 114 PKVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVHGCIARDFDYILFGGNNLYQARV 173
Query: 179 WLGERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIV 232
G G ++ MD ++ L R+ LI + +++G DY+Q G+ G+G +A +IV
Sbjct: 174 EFGFSGKIQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEIV 232
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L D + DSD+FLFGA V + + + +V Y+
Sbjct: 572 FGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLKG-FFESKTSLVYYDT 630
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV-VLQRIAS 246
I+ LG R+ LI LAL LGSDY+ G++G+G +A +IV+ V DNV L+R S
Sbjct: 631 QYIKEDLGLNRDQLIYLALFLGSDYTLGIKGVGIVNAMEIVE-VFDNVEALKRFTS 685
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV NLW +L + + + + L+ RV ID+S W+++L + + + + L G+ R
Sbjct: 1 MGVYNLWKLLAAAGRNIDIASLRGLRVAIDVSIWMIKLLHGMSNSGVNFENVHLIGILKR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
+ L+ +FV DG P +K T +R + Q + NL K++
Sbjct: 61 IMFLLENGIKPVFVFDGPAPELKRQTLIKR---AQQRQQYNINLQKLA 105
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 37/264 (14%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L +++E KK L L+ K++ ID + Q + +P L L
Sbjct: 2 DLAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLN 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDKNL 104
GLF+R +++ I+V DG P K RR + +E + L
Sbjct: 60 GLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSEL 119
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S D
Sbjct: 120 KKYAQMSIRLTNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDY 176
Query: 165 DIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLG 213
D LFGA+ + R++ L G+ YV E+D + +KLG R LI + +++G
Sbjct: 177 DSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG 236
Query: 214 SDYS-QGVRGLGPESACQIVKSVG 236
+DY+ G++G G ++A +I+K G
Sbjct: 237 TDYNPDGIKGYGVKTAYRIIKKYG 260
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana RWD-64-598
SS2]
Length = 1485
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L +G + DSD+FLFG V+++++ + V C+ +
Sbjct: 964 FGIPYITAPMEAEAQCAELVQLGLVEGVITDDSDVFLFGGLRVFKNMF-NQSKTVECFLL 1022
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
D+ R+LG R++L+ LA LLGSDY +G+ G+GP A +++K ++GL
Sbjct: 1023 SDLARELGLERDTLVRLAYLLGSDYVEGLPGVGPVVAMELLKEF--------PGADGLHK 1074
Query: 252 VKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSE 311
+ + G + +++ + + D L E P QV DAY +P S+
Sbjct: 1075 FRDWWGKVQSGRDREADSQSKFRKRFKKKF-KDLYLPPEWPNPQVRDAYYHPTVDSS--- 1130
Query: 312 AVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRR 357
+ L + + W +K D+ +LP I + R+
Sbjct: 1131 --REPFKWGMPDLDALREFLREELSWGQKKVDDLLLPIIQKMSRRK 1174
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK+LW ++E + +PL ++ K + ID S WI Q Q ++ R + L G
Sbjct: 1 MGVKSLWSLVEPVGRPVPLETVEGKAMAIDSSIWIYQFQATMRDRDGRGLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ 99
R+ L+ +FV DG PA+K T R+R SG+ +
Sbjct: 60 RRICKLLFYGVRPVFVFDGGAPAMKRGTIMERKRKKSGAAASH 102
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 34/259 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----NKSYRPQTD---KLF 53
MGVK I E +++ + L K + ID WI Q + SY +
Sbjct: 1 MGVK-FNGIFEG--RSIKMQELSGKTIAIDAFNWIFQFLTTIRLADGSYLTDSKGRVTTH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR--------LNSGSEVTQDDKNLD 105
L G+F+R +++ +FV DG P K T + R + + + VTQ+++ +
Sbjct: 58 LNGIFYRCISMLENGINPVFVFDGKAPRFKKETLKERESIKEEARIKAENAVTQEERAM- 116
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
R + ++ +K L +GV ++ E EAQ A ++ + L S D D
Sbjct: 117 ----YMRRLSRIDDYIVASSKELLDYMGVKYVQAPAEGEAQAAWMSGKGLVYAAASQDYD 172
Query: 166 IFLFGARTVYRDI------WLGERGYVVCYEMDDIE-----RKLGFGRNSLITLALLLGS 214
LFGA+ V R++ + +G V + IE +KLG R +I +AL G+
Sbjct: 173 TILFGAKRVIRNLNINNKRKISRKGITVQVNPEIIESDYNLKKLGVDREKMIVVALFTGT 232
Query: 215 DYSQGVRGLGPESACQIVK 233
DY++GV G+GP A +VK
Sbjct: 233 DYNKGVDGIGPRKALNLVK 251
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSL 110
L GLF+R ++ I+V DG P K RR + E + K+ K+ L
Sbjct: 11 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEEL 70
Query: 111 RRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + + M++E+K L ++G+P ++ E EA+ A LN L S D D
Sbjct: 71 RKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAI 130
Query: 168 LFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R YV E + + +KLG R LI + +L+G+DY
Sbjct: 131 LFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G+RG+GPE A +I+K G
Sbjct: 191 NPDGIRGIGPERALKIIKKYG 211
>gi|229577369|ref|NP_001153363.1| mutagen-sensitive 201 [Nasonia vitripennis]
Length = 1167
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 183
EA+ L GVP + EAEAQCA L L DG + DSDI+LFG VY++ + +
Sbjct: 777 EAQELLRLFGVPYIVAPMEAEAQCAYLEQIKLTDGTITDDSDIWLFGGHCVYKNFFDNNK 836
Query: 184 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
V+ + DIE R +I LALL+GSDY+ G+ G+GP +A +I+
Sbjct: 837 -RVLQFLSQDIEHHFKLSRREMIQLALLVGSDYTNGLAGVGPVTALEIL 884
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +L++ K +PL L+ K + ID+S WI Q +Q L GLF+
Sbjct: 1 MGVLGLWRLLDATGKPVPLETLEGKVLAIDISIWIHQVIQGYQDRRGNALPNAHLIGLFN 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNS 93
R+ L+ +FV DG +P +K +T RR+L S
Sbjct: 61 RICKLMYFKIKPVFVFDGGVPLLKKNTIATRRKLKS 96
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P ++ EAEAQCA LN + CD S DSD+ +F +T+ ++ + ++ V YE
Sbjct: 940 FGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKN-FFNKKKTVEVYEK 998
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IERKLG ++ LI +++L G DY+ GV G+G +A +I+K+
Sbjct: 999 NLIERKLGLYQDDLINISMLCGCDYTIGVHGVGIVNALEIIKA 1041
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 35/259 (13%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L +I+E K+ + L+ ++ K++ ID I Q + +P L L
Sbjct: 2 DLGEIVEDVKREINLNEMKGKKISIDAYNTIYQF--LAAIRQPDGTPLIDSKGRITSHLN 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNLDK 106
GLF+R ++I IFV DG P K RR +++ + + + K
Sbjct: 60 GLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRK 119
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+ + +E M++E+K L ++G+P ++ E EA+ A +N L S D D
Sbjct: 120 YAQAAVRLSNE---MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDS 176
Query: 167 FLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSD 215
LFGA+ + R+I + G+R YV E++ + +KLG R LI +A+L+G+D
Sbjct: 177 LLFGAKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTD 236
Query: 216 YS-QGVRGLGPESACQIVK 233
Y+ GV+G+G ++A +I+K
Sbjct: 237 YNPDGVKGIGVKTALRIIK 255
>gi|405964237|gb|EKC29743.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 417
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 71 LIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGL 130
L+ V+DG P K R G D+ F ++++ +
Sbjct: 7 LVMVADGIAPECKREAMALRSKEGGVTNSVDRPW-------------FKSIVEKCFEVLK 53
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-CY 189
LG+PC++ EAEA CA L+ L DG +SDSD L+GART Y V Y
Sbjct: 54 CLGLPCIKAPGEAEAYCAWLDENGLVDGVLTSDSDALLYGARTF---------DYAVDLY 104
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
EM IE +LG R +L+ +A+L+G DY +G+R +G E A ++ + + N
Sbjct: 105 EMSVIEERLGMTRETLVAMAMLVGCDYDEGIRDIGIEKAQELFRELRSN 153
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MGV K L+D K L +R+ ID S + Q K ++ Q+ +L
Sbjct: 1 MGVLGLSKLLYDRTPGAIKEQELKVYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L G+F R +I I+V DG P +K S R +
Sbjct: 61 AGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFEKAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS +G + ++E K L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGDDEAMEKMSKRMVRVGRD---QMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+R + R + GE + + Y +D+I GF I L +LLG D
Sbjct: 178 AVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y + G+GP A + +K G
Sbjct: 238 YVPRISGIGPHKAWEGIKKYG 258
>gi|405117687|gb|AFR92462.1| single-stranded DNA specific endodeoxyribonuclease [Cryptococcus
neoformans var. grubii H99]
Length = 1222
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA L L DG + DSD+FLFG +++I+ + YV C+ +
Sbjct: 841 FGIPYITAPMEAEAQCAKLAQLGLVDGIITDDSDVFLFGGGQCFKNIF-NDAKYVECFLL 899
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
D+ER+L R LI+LA LGSDY+ G+ G+GP +I+
Sbjct: 900 ADVERELMLTRERLISLAYFLGSDYTLGLPGVGPVMGLEIL 940
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 35/271 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV I + + L HL+ K V ID + Q + +P L
Sbjct: 1 MGVNIREVIPPEAIQEIDLAHLKYKVVAIDAYNALYQFLTAIR--QPDGTPLMDSKGRIT 58
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDK 102
L GLF+R L+ +++V DG P +K RR SE + D K
Sbjct: 59 SHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTK 118
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ + + + E M+++AK L ++GVP ++ E EAQ A + S
Sbjct: 119 AARRYAQMAARLTDE---MVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQ 175
Query: 163 DSDIFLFGARTVYRDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFG+ + R++ + R YV E+D + + LG R L+ L +L
Sbjct: 176 DYDSLLFGSPRLVRNLAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGIL 235
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVGDNVVL 241
+G+DY+ GV+G+GP++A ++VK+ D V L
Sbjct: 236 IGTDYNPDGVKGIGPKTALKMVKAHRDPVKL 266
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 25/253 (9%)
Query: 1 MGVKNLWDILE-----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----------NKSY 45
MG++ L ++E + K L + H N+ + ID S + Q N S
Sbjct: 1 MGIRGLAKLIEEIAPAAVSKRL-IQHYCNRVIAIDASVMLYQFITTITSGDGTALANSSG 59
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ---- 99
+ L GL ++ ++ IFV DG P K RR+ +E+ Q
Sbjct: 60 EITS---HLVGLLSKVTRMVEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAE 116
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
++ ++++ L R K+A+ L LG+P + EAEAQC + LC+G
Sbjct: 117 EEGDIERAKQLSRRTVKVTQQHCKQAEKLLDILGIPYVVAAGEAEAQCVAMAKAGLCEGV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
SSD D+ FG+ ++ R++ G ++ +D + +LGF + + L +L G DY+
Sbjct: 177 ASSDLDVLAFGSPSLIRNLAQGGDKEIMEINLDTVLNELGFSYDEFLDLCILCGCDYANS 236
Query: 220 VRGLGPESACQIV 232
+ G+GP++A +++
Sbjct: 237 LEGIGPKTAYKLI 249
>gi|410912947|ref|XP_003969950.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Takifugu rubripes]
Length = 875
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP L EAEAQCA L+ + G + DSD++LFG R VY++ +
Sbjct: 474 MYLESQELLQLFGVPFLVAPMEAEAQCAALDRDDHTHGTITDDSDVWLFGGRHVYKN-FF 532
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ YV ++ D++ LG R LI LA LLGSDY++GV G+G + +++
Sbjct: 533 SQNKYVEYFQYSDLQNVLGLDRAKLINLAYLLGSDYTEGVAGVGYVTGMEVL 584
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK 106
R+ L+ +FV DG P +K T R E++++ K ++
Sbjct: 61 RICKLLFFRIKPVFVFDGEAPLLKKQTLALRRQRKEEMSRESKQTNE 107
>gi|47230549|emb|CAF99742.1| unnamed protein product [Tetraodon nigroviridis]
Length = 866
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Query: 95 SEVTQDDKNLDKMSSLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLE 153
S + + +L ++ + M S + M E++ L GVP L EAEAQCA L+
Sbjct: 646 SSLQAEQNSLKELQQQQERMASTVTGQMYLESQELLRLFGVPFLIAPMEAEAQCAALDRA 705
Query: 154 SLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
G + DSD++LFG R VY++ + + YV ++ D++ LG R LI LA LLG
Sbjct: 706 DHTHGTITDDSDVWLFGGRHVYKN-FFSQNKYVEYFQYSDLQNALGLDRTKLINLAYLLG 764
Query: 214 SDYSQGVRGLG 224
SDY++GV G+G
Sbjct: 765 SDYTEGVAGVG 775
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LES K + L+ K + +D+S W+ Q ++ V L LFH
Sbjct: 1 MGVHGLWRLLESTGKPINPETLEGKILAVDISIWLNQAVKGVRDREGNSVQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK 106
R+ L+ +FV DG P +K T R E++++ K ++
Sbjct: 61 RICKLLFFRIRPVFVFDGEAPLLKKQTLALRRQRKEELSRESKQTNE 107
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 25/253 (9%)
Query: 1 MGVKNLWDILE-----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----------NKSY 45
MG++ L ++E + K L + H NK + ID S + Q N S
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRL-IQHYCNKVIAIDASVMLYQFITTITSGDGAALANSSG 59
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ---- 99
+ L GL ++ + IFV DG P K RR+ +E+ Q
Sbjct: 60 EVTS---HLVGLLAKVIRMAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAE 116
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
++ NL++ L R K+A+ L LG+P + EAEAQC + E LC+G
Sbjct: 117 EEGNLERAKQLSRRTVKVTQQHCKQAERLLDVLGIPYIIAAGEAEAQCVAMAKERLCEGV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
SSD D+ FG+ + R++ G ++ ++ + ++LGF + + L +L G DY+
Sbjct: 177 ASSDLDVLAFGSPCLIRNLAQGGDREIMEINLNIVLKELGFSYDEFLDLCILCGCDYANS 236
Query: 220 VRGLGPESACQIV 232
+ G+GP++A +++
Sbjct: 237 LEGIGPKTAYKLI 249
>gi|452000823|gb|EMD93283.1| hypothetical protein COCHEDRAFT_1223047 [Cochliobolus
heterostrophus C5]
Length = 926
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 36/218 (16%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID S W+ Q+Q + LR ++RL LI+L +FV DG
Sbjct: 34 RIAIDTSIWLFQIQASKGKFFQGGTNPALRTFYYRLLRLISLAIHPVFVFDGP----NKP 89
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
++R +G + + L AK L G P EAEA
Sbjct: 90 PFKRNKRTGPNIASIPEFL--------------------AKQLLKQFGYPIHLAPGEAEA 129
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIERK--- 197
+CALL E + D S D D +FG+ R+ W E+ +V Y D +E K
Sbjct: 130 ECALLQREGIVDAVLSEDVDTLMFGSGVTLRN-WSPEKSGKTPTHVNIY--DAVETKNGP 186
Query: 198 LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 187 SGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 224
>gi|401888761|gb|EJT52712.1| hypothetical protein A1Q1_02762 [Trichosporon asahii var. asahii CBS
2479]
Length = 1245
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 879 AMVVQIQTLLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF 938
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+ + C D+ER+L R LI+L+ LLGSDY+ G+ G+GP A +++ +
Sbjct: 939 -NDNKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELLANFPGPD 997
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDA 299
L R E + V+R ++ E + N ++ + I L + P QV +A
Sbjct: 998 GLLRF-KEWWTRVQRGQDLDVEADTKWKRNFKKRFSGSI-------FLLSDWPNPQVREA 1049
Query: 300 YSNPKCYSADSEAVH----RVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP---KIAE 352
Y P +D E H R+ A F H L W K D+ + P +IA+
Sbjct: 1050 YLYPTTDESD-EPFHWGFPRLQALRTFLHEELS--------WSISKVDDELTPIVQRIAQ 1100
Query: 353 R 353
R
Sbjct: 1101 R 1101
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKLFLRGLF 58
MGVK LW +L + + + L+ KR+ ID S W+ Q Q+ +K R + L G
Sbjct: 1 MGVKGLWSLLNPVGRPVQIESLEGKRLAIDSSIWLYQFQSTMRDKEGRVLVNAHVL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS 95
R+ L+ +FV DG PA+K ST R+R G+
Sbjct: 60 RRINKLLFHGIKPVFVFDGGAPALKRSTIAERKRRKVGA 98
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M + K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1211 MNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLVFSGKTVIKN-FF 1269
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
++ V YE IE KLG + LI ++LL G DY+ GV G+G +A +I+K+
Sbjct: 1270 NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIVNALEIIKA 1323
>gi|451854672|gb|EMD67964.1| hypothetical protein COCSADRAFT_187007 [Cochliobolus sativus
ND90Pr]
Length = 934
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 99/219 (45%), Gaps = 38/219 (17%)
Query: 26 RVCIDLSCWIVQLQ-NVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKL 84
R+ ID S W+ Q+Q + KS + T+ LR ++RL LI+L +FV DG
Sbjct: 34 RIAIDTSIWLFQIQASKGKSSQGGTNPA-LRTFYYRLLRLISLAIHPVFVFDGP----NK 88
Query: 85 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 144
++R +G V + L AK L G P EAE
Sbjct: 89 PPFKRNKRTGPTVASIPEFL--------------------AKQLLKQFGYPIHLAPGEAE 128
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIERK-- 197
A+CALL E + D S D D +FG+ R+ W E+ +V Y D +E K
Sbjct: 129 AECALLQREGIVDAVLSEDVDTLMFGSGVTLRN-WSPEKSGKTPTHVNVY--DAVETKNG 185
Query: 198 -LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +AL+ G DY +G+ G GP++AC+ K+
Sbjct: 186 PSGLDREGMILVALMSGGDYVPEGIPGCGPKTACEAAKA 224
>gi|195559286|ref|XP_002077347.1| GD20054 [Drosophila simulans]
gi|194202449|gb|EDX16025.1| GD20054 [Drosophila simulans]
Length = 259
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAEAQCA LN L G + DSDI+LFG RTVY++ + +V+ +
Sbjct: 20 FGIPYIVAPMEAEAQCAFLNATDLTHGTITDDSDIWLFGGRTVYKNF-FAQNKHVMEFRA 78
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ IE+ R LI LA L+GSDY+ G+ G+G +A +I+ S
Sbjct: 79 EQIEQTFNCNRGKLIQLACLVGSDYTTGIHGIGAVTALEILAS 121
>gi|427786261|gb|JAA58582.1| Putative xp-g/rad2 dna repair endonuclease [Rhipicephalus
pulchellus]
Length = 778
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLG 213
+ DGC + D D FL+GA+TVYR + + ++ +V+ Y++ DIE KLG R L+ LA+L G
Sbjct: 1 MVDGCITQDGDAFLYGAKTVYRKLCVEDKDPHVLSYKISDIESKLGLDREKLVALAVLAG 60
Query: 214 SDYSQGVRGLGPESACQIVKSVGDNVVLQRI 244
DY GVR +G E+A +++ GD+ L+R+
Sbjct: 61 CDYFSGVRNVGKETAIKLLNKFGDSGSLERL 91
>gi|156045904|ref|XP_001589507.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980]
gi|154693624|gb|EDN93362.1| hypothetical protein SS1G_09228 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1188
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 8/148 (5%)
Query: 78 SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR------RNMGSEFS-CMIKEAKALGL 130
+I A + + + LN+ SE D ++ +LR R E S MI E +AL
Sbjct: 838 AIEAEEHARFASTLNNKSEKENHDSYEKELKALRSQQKKDRRDADEVSHIMITECQALLR 897
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 190
G+P + EAEAQCA L L DG + DSDIFLFG VY++++ + V CY
Sbjct: 898 LFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK-LVECYL 956
Query: 191 MDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D+E++L R+ LI++A LLGSDY++
Sbjct: 957 LSDLEKELSLSRDQLISIAHLLGSDYTE 984
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW I++ C + PL L KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVTGLWTIVQPCARPTPLPALNRKRLAVDASIWIYQFLKAVRDKEGNALRNSHIVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLST 86
R+ L+ +FV DG P +K T
Sbjct: 61 RICKLLFHGIKPVFVFDGGAPILKRQT 87
>gi|358341292|dbj|GAA49005.1| DNA excision repair protein ERCC-5 [Clonorchis sinensis]
Length = 1013
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
DD D+ L R + ++EA+ L G+P + EEAEAQC L L D
Sbjct: 584 DDVLRDQADRLTRQAQTTTQRCVEEAQNLLQLFGMPFIVSPEEAEAQCVALQQSGLVDLV 643
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVC--------------YEMDDIERKLGFGRNSL 205
S DSD++ FGAR V R ++ G G V Y +DD++R +G ++
Sbjct: 644 ASDDSDVWPFGARLVCRHLFAG--GAVDTKPKVTRKAPRVPSQYTLDDVQRTVGLNTMNI 701
Query: 206 ITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
+ LALL GSDY+ GV+ +GP +A +I+ G+
Sbjct: 702 LRLALLCGSDYTPGVQNVGPVTAVEILNEFGE 733
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LW++LE ++ + L L K V ID++ W+ Q V K +L LF R
Sbjct: 1 MGVPGLWELLEPARRPIELEQLTGKTVAIDMNIWL--HQAVKSRASTGGPKAYLTVLFRR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTY--RRRL 91
L LI +FV DG +PA+K +T RRRL
Sbjct: 59 LCKLIYFGIRPVFVFDGDVPALKKATMAVRRRL 91
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 18/199 (9%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GLF+R L+ I+V DG P IK L R+ + + K K+ +
Sbjct: 11 LNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRKLKEEAMKKLERAKEEGKIEEV 70
Query: 111 RR--NMGSEF-SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ M S S M E K L +G+P ++ E EA+ A +N + L S D D
Sbjct: 71 RKYSQMTSRLTSSMANEGKRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYAAASQDYDSL 130
Query: 168 LFGARTVYRDIWL-GER------GYV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA + R++ + G+R YV E D + +KLG R+ LI +A+L+G+DY
Sbjct: 131 LFGATRLIRNLTISGKRKLPNKDAYVEVKPEVIEADLLLKKLGITRDELIDIAILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKS 234
+ G++G+GP+ A +++K+
Sbjct: 191 NPDGIKGIGPKRAYKLIKT 209
>gi|406697519|gb|EKD00778.1| single-stranded DNA specific endodeoxyribonuclease [Trichosporon
asahii var. asahii CBS 8904]
Length = 1166
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
M+ + + L G+P + EAEAQCA L L DG + DSD+FLFG +++I+
Sbjct: 800 AMVVQIQTLLRHFGIPYITAPMEAEAQCAKLAELGLVDGIITDDSDVFLFGGTQCFKNIF 859
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
+ + C D+ER+L R LI+L+ LLGSDY+ G+ G+GP A +++
Sbjct: 860 -NDNKFAECILATDVERELSLTRERLISLSYLLGSDYTIGLPGIGPVLALELL 911
>gi|393245000|gb|EJD52511.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 564
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 141/364 (38%), Gaps = 61/364 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD+L +T L L + R+ ID S W Q N
Sbjct: 1 MGVPGLWDVLRPAARTQSLSQLAVTQGFEGNTGGHRGFRIGIDASIWFFHAQVFNGKAFS 60
Query: 48 QTD---KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
+ D +R LF R L++L +FV DG R + G +++
Sbjct: 61 KGDVGENPEIRTLFFRCAKLMSLPLLPLFVFDGP--------QRPKWKRGKRISKHKD-- 110
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
S ++ + + + G C+ EAEA+ A LN + D + D
Sbjct: 111 --------------SWLVGAMQNIIQAFGYECIHAHGEAEAELAYLNRIGVIDAVLTDDV 156
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDI--ERKLGFGRNSLITLALLLGSDYSQ-GVR 221
D FLFGA + R + + +V CY+ DD+ + + LI + L+ G DY Q GV+
Sbjct: 157 DTFLFGATMIIRKCVVVDGNHVNCYKADDLRTHEDIMLTQGGLILIGLMRGGDYHQAGVQ 216
Query: 222 GLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGW--SFKCNNKEESLNQEI 278
G+G A + + GD +V V+ K E + ++ + E
Sbjct: 217 GIGVGIARGLAECGFGDQLV---------EAVRTLKGDALETFLDQWRSDIVHELRTNSR 267
Query: 279 NVNGTDHSLQRET-----PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQ 333
+ G H+ T P +V+DAY NP S H + + L ++C Q
Sbjct: 268 GIIGKKHAKLASTFPIDFPDLKVVDAYVNP-VISEKKGVFHDIEWRREPDLTLLAKLCEQ 326
Query: 334 FFQW 337
F+W
Sbjct: 327 HFEW 330
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 230 QIVKS 234
+++++
Sbjct: 1533 EVLRA 1537
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNK----SYRPQTDKLFLRG 56
MGVK LWD+LE + + +L+ K V +D + W+VQ + K S P L G
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAA---HLVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
F+RL L+ I V DG P +K T L + Q +KNL
Sbjct: 58 FFNRLCRLLFFEIRPIIVFDGPPPFLKRQTL---LTRKRQRQQQEKNL 102
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 230 QIVKS 234
+++++
Sbjct: 1533 EVLRA 1537
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNK----SYRPQTDKLFLRG 56
MGVK LWD+LE + + +L+ K V +D + W+VQ + K S P L G
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAA---HLVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
F+RL L+ I V DG P +K T L + Q +KNL
Sbjct: 58 FFNRLCRLLFFEIRPIIVFDGPPPFLKRQTL---LTRKRQRQQQEKNL 102
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L++ G+ M + AL + GVP + EAEA A L ++L D S DSD +F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR +YR+ + ++ V YE I KLG G+ LI LA+LLG DY+ GV+G+G +A
Sbjct: 1474 GAREIYRNFFENKK-SVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVNAV 1532
Query: 230 QIVKS 234
+++++
Sbjct: 1533 EVLRA 1537
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNK----SYRPQTDKLFLRG 56
MGVK LWD+LE + + +L+ K V +D + W+VQ + K S P L G
Sbjct: 1 MGVKGLWDLLEPAGRRVAAGNLKGKVVAVDAAIWLVQFLHAMKLPDGSPMPAA---HLVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
F+RL L+ I V DG P +K T L + Q +KNL
Sbjct: 58 FFNRLCRLLFFEIRPIIVFDGPPPFLKRQTL---LTRKRQRQQQEKNL 102
>gi|147845003|emb|CAN80577.1| hypothetical protein VITISV_031734 [Vitis vinifera]
Length = 239
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 14/182 (7%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS--YRPQTDKLFLR-- 55
MGV + W++L+ + +++NKRV +DLS WIVQ + K+ P F R
Sbjct: 1 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKANVRNPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD-KNLDKMSSLRRNM 114
LF + A +FV DG+ +K R GS + +++ S+ RN
Sbjct: 61 NLFSKFGAFP------VFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERN- 113
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
+EFS ++E L LG+P L+ EEAEA CA LN E D C ++DSD FLFGA+ V
Sbjct: 114 -AEFSRRVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCV 172
Query: 175 YR 176
+
Sbjct: 173 IK 174
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 35/258 (13%)
Query: 9 ILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LRGLFH 59
+++ K+ + L L+ K+V ID I Q + +P L L G+F+
Sbjct: 1 MVKEIKREVQLSELKGKKVSIDAYNAIYQFLTAIR--QPDGTPLMDSQGRVTSHLSGIFY 58
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNLDKMSSL 110
R +L+ I+V DG P +K RR ++ + K L K S +
Sbjct: 59 RTISLLEEGVIPIYVFDGKPPELKAQELERRRKIKEEAEKKLEKAKEEGETKELKKYSQM 118
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+ ++ M +E K L ++G+P ++ E EA+ A L + S D D LFG
Sbjct: 119 ATRLTND---MAEEGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYTWAAASQDYDSLLFG 175
Query: 171 ARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-Q 218
A + R++ L G+R YV E++D+ +K G R L+ + +L+G+DY
Sbjct: 176 ANKLIRNLTLTGKRKLPKKDVYVEIKPELIELEDLLKKFGITREQLVDIGILIGTDYDPD 235
Query: 219 GVRGLGPESACQIVKSVG 236
G++G+GP +A +I+K G
Sbjct: 236 GIKGIGPVTALRIIKKYG 253
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 29/259 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV ++ ++L KK + + +L NK V ID + Q ++ + P D
Sbjct: 1 MGV-DIGELLH--KKEVEISNLSNKTVAIDAYNTLYQFLSIIRQRDGTPLQDSKGRTTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-----DKNLDKMS 108
L G+ +R+ L+ + +FV DG P K T +R S Q +K L +
Sbjct: 58 LSGILYRITNLVEEDIKPVFVFDGKPPDFKTDTLEKRKQSRENANQKWNEAKEKGLTE-E 116
Query: 109 SLRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+ + GS ++ +AK L S+G+P L+ E EAQ A + + D S D D
Sbjct: 117 AYKYAQGSARIDDQILDDAKYLLESMGIPYLQSPSEGEAQAAHMVQKGDADYVGSQDYDA 176
Query: 167 FLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSD 215
LFGA V R++ + G+ Y+ +M++ + +G R+ LI +AL +G+D
Sbjct: 177 LLFGAPHVIRNLTITGKRKLPGKNTYIDLKPETIDMEENLKSMGITRSKLIDIALCVGTD 236
Query: 216 YSQGVRGLGPESACQIVKS 234
Y++G+ +GP+ A ++VK+
Sbjct: 237 YNKGLEKIGPKRALKLVKT 255
>gi|341039026|gb|EGS24018.1| nuclease-like protein [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 922
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 47/250 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + S ++ L + HL+ R+ ID++ W Q+Q P
Sbjct: 1 MGIKGIYKEIGSGERISLCKLAIDHLEQHNRPLRLAIDMAIWQFQIQAARGGSNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+R L++L IFV DG I ++R SG+
Sbjct: 57 -IRTLFYRFVRLLSLGIHPIFVFDGPNKPI----FKRNRRSGT----------------- 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
G+ S + AK L G + EAEA+CA L + + D S D D +FG+R
Sbjct: 95 --GNGVSTAM--AKRLIRLFGFTAHDAPGEAEAECAYLEQQGIVDAVLSEDVDTIMFGSR 150
Query: 173 TVYRDIWL--GERG----YVVCYEMDDI-ERKLGFGRNSLITLALLLGSDY-SQGVRGLG 224
RD W G +G +V ++ I E G R ++ +AL+ G DY G+ G G
Sbjct: 151 VTLRD-WSSEGSKGGPPTHVTLHDAKKIAEGPSGLDREGMVLVALMSGGDYLPDGIPGCG 209
Query: 225 PESACQIVKS 234
+ ACQ K+
Sbjct: 210 IKVACQAAKA 219
>gi|17555016|ref|NP_498361.1| Protein GEN-1 [Caenorhabditis elegans]
gi|351050616|emb|CCD65214.1| Protein GEN-1 [Caenorhabditis elegans]
Length = 434
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 34/266 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
M + +W+ + +P +++K + ID W+ + +++ QT +L F R
Sbjct: 1 MTINGIWEWANHVVRKVPNETMRDKTLSIDGHIWLYESLKGCEAHHQQTPNSYLVTFFTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG-SEFS 119
++ L+ L I V D +N+ S + + + RR+ G S F+
Sbjct: 61 IQRLLELKIIPIVVFDN-------------INASSSAHESKDQNEFVPRKRRSFGDSPFT 107
Query: 120 CMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
++ + AL LG+ + + EAQCA L + GC ++D D FLFG + +YR
Sbjct: 108 NLVDHVYKTNALLTELGIKVIIAPGDGEAQCARLEDLGVTSGCITTDFDYFLFGGKNLYR 167
Query: 177 DIWLGERGYVVCYEMDDIERKLG-------FGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
+ C D + LG R LI+ A+LLG DY Q GV+ +G S
Sbjct: 168 FDFTAGTSSTACLH-DIMHLSLGRMFMEKKVSRPHLISTAILLGCDYFQRGVQNIGIVSV 226
Query: 229 CQIVKSVGD--------NVVLQRIAS 246
I+ GD +V+L R AS
Sbjct: 227 FDILGEFGDDGNEEIDPHVILDRFAS 252
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 35/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V +D + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GL +R +L+ +FV DG P +K T RR E+ + K + + N
Sbjct: 58 LSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRR----KEIRESSKEKWENAKAEGN 113
Query: 114 MGSEFSC----------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + +I+++K L +G+P ++ E EAQ A + L+ D S D
Sbjct: 114 LEAAYKYAQASSKVDQDIIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQD 173
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIER---KLGFGRNSLITLALLL 212
D FLFGA TV R++ G+ YV V EM ++E LG R+ LI +A+ +
Sbjct: 174 YDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICV 233
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++G+ +GP++A +++K G+
Sbjct: 234 GTDYNKGLEKVGPKTALKLIKKHGN 258
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 35/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V +D + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GL +R +L+ +FV DG P +K T RR E+ + K + + N
Sbjct: 58 LSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRR----KEIRESSKEKWENAKAEGN 113
Query: 114 MGSEFSC----------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + +I+++K L +G+P ++ E EAQ A + L+ D S D
Sbjct: 114 LEAAYKYAQASSKVDQDIIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQD 173
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIER---KLGFGRNSLITLALLL 212
D FLFGA TV R++ G+ YV V EM ++E LG R+ LI +A+ +
Sbjct: 174 YDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICV 233
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++G+ +GP++A +++K G+
Sbjct: 234 GTDYNKGLEKVGPKTALKLIKKHGN 258
>gi|149246113|ref|XP_001527526.1| hypothetical protein LELG_00046 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447480|gb|EDK41868.1| hypothetical protein LELG_00046 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 635
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 116/258 (44%), Gaps = 39/258 (15%)
Query: 1 MGVKNLWDILESCKKT----------LPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTD 50
MGV LWDIL++ L H + RV ID +I QL + S P +
Sbjct: 1 MGVAELWDILKTASSPRVPLEVFVDQFILEHGRTPRVAIDAYMFIFQL---DHSAIPLEE 57
Query: 51 K--LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--KNLDK 106
K + ++ ++ ALI+LN +I V DG K + +G+ + +D + K
Sbjct: 58 KAHIVVQNFMSKILALISLNVSVIVVFDGCCKPDK-----SKSGNGTLLYEDQFREFTVK 112
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+++ RN E + + + L L+ + C + E EAQCA + D S+D D
Sbjct: 113 VANNERNFSEEIPIVEEIKELLRLNSILYC-QAPGEGEAQCAHFQRLGVVDFVMSNDVDT 171
Query: 167 FLFGARTVYR-------DIWLG---------ERGYVVCYEMDDIERKLGFGRNSLITLAL 210
+FGA + R DI L R YV EMD +E GF R+ L+ LA
Sbjct: 172 LVFGATKMLRNYSRFLEDIGLSPLKKQATLKTRYYVTPIEMDKVEAVTGFSRSRLVFLAS 231
Query: 211 LLGSDYSQGVRGLGPESA 228
L G DYS GV+ +G +A
Sbjct: 232 LRGGDYSSGVQRIGITNA 249
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1103 MNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FF 1161
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
++ V YE IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1162 NKKKTVEVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1215
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSL 110
L GLF+R ++ I+V DG P K RR E + K+ K+ L
Sbjct: 11 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 70
Query: 111 RRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + + M++E+K L ++G+P ++ E EA+ A LN+ S D D
Sbjct: 71 RKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSI 130
Query: 168 LFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R Y+ + E+ + E +KLG R LI +++L+G+DY
Sbjct: 131 LFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G++G+GPE A +I+K G
Sbjct: 191 NPDGIKGIGPERALKIIKKYG 211
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSL 110
L GLF+R ++ I+V DG P K RR E + K+ K+ L
Sbjct: 11 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 70
Query: 111 RRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + + M++E+K L ++G+P ++ E EA+ A LN+ S D D
Sbjct: 71 RKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSI 130
Query: 168 LFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R Y+ + E+ + E +KLG R LI +++L+G+DY
Sbjct: 131 LFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G++G+GPE A +I+K G
Sbjct: 191 NPDGIKGIGPERALKIIKKYG 211
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSL 110
L GLF+R ++ I+V DG P K RR E + K+ K+ L
Sbjct: 11 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 70
Query: 111 RRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + + M++E+K L ++G+P ++ E EA+ A LN+ S D D
Sbjct: 71 RKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAASQDYDSI 130
Query: 168 LFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R Y+ + E+ + E +KLG R LI +++L+G+DY
Sbjct: 131 LFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G++G+GPE A +I+K G
Sbjct: 191 NPDGIKGIGPERALKIIKKYG 211
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSL 110
L GLF+R ++ I+V DG P K RR E + K+ K+ L
Sbjct: 11 LSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSEGKIEEL 70
Query: 111 RRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + + M++E+K L ++G+P ++ E EA+ A LN+ S D D
Sbjct: 71 RKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAASQDYDSI 130
Query: 168 LFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDY 216
LFGA+ + R++ + G+R Y+ + E+ + E +KLG R LI +++L+G+DY
Sbjct: 131 LFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISILIGTDY 190
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G++G+GPE A +I+K G
Sbjct: 191 NPDGIKGIGPERALKIIKKYG 211
>gi|407922590|gb|EKG15687.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 691
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 144/365 (39%), Gaps = 70/365 (19%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID S W+ Q+Q+ P LR ++RL LI+L+ +FV DG
Sbjct: 34 RIAIDTSIWLFQIQSSKGGTNPA-----LRTFYYRLLRLISLSIHPLFVFDGP----NKP 84
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
++R +G V + L AK L G P EAEA
Sbjct: 85 PFKRNKRTGPNVASIPEFL--------------------AKQLLKQFGFPFHIAPGEAEA 124
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER------GYVVCYEMDDIER-KL 198
+CALL E + D S D D +FG+R R+ W E+ +V Y+ +
Sbjct: 125 ECALLQREGIVDVVLSEDVDTLMFGSRITLRN-WSPEQKSSKVPTHVNVYDAGKTKSGPS 183
Query: 199 GFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKN 257
G R +I +AL+ G DY +G+ G GP++AC+ ++ L +K+
Sbjct: 184 GLDREGMILVALMSGGDYLPEGIPGCGPKTACEAARAG---------FGHRLCAIKKKDT 234
Query: 258 SKKEGWSFKCNNKEESLNQEINVNGTDH--------SLQRETPFSQVIDAYSNPKCYSAD 309
+ + W E L +E+ N + S+ + P + ++ Y +P S
Sbjct: 235 AALQAW-------REDLARELRTNESKFFKRKHGTLSVPEDFPRADILGYYVSPAISS-- 285
Query: 310 SEAVHRVLAQHL-----FQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRAN 364
EA+ R L ++L A L A F+W + + +A L R +R
Sbjct: 286 PEALER-LKRNLRWDQDLNFAGLRTFTADAFEWVKVTGAKKFIRNLAPALLVRHLRMRGQ 344
Query: 365 TLALG 369
A G
Sbjct: 345 AAAEG 349
>gi|346467817|gb|AEO33753.1| hypothetical protein [Amblyomma maculatum]
Length = 266
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
G KE K L LG+PC + +AE+ CA LN + DGC + SD FL+GA+TV
Sbjct: 59 GQRTGSQQKERKTLVDILGLPCCQIDRKAESVCAFLNEKGTVDGCITEGSDAFLYGAQTV 118
Query: 175 YRDI-WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
YR E + Y + DIE+K R LI L +L+GSD G+ G+G +A Q++K
Sbjct: 119 YRKFNIEEEDPEIDEYNISDIEKKADLNRKKLIALNMLVGSD---GIPGVGMVTAGQLLK 175
Query: 234 SVGDNVVLQRI 244
GD+ ++R+
Sbjct: 176 EFGDDDPIKRL 186
>gi|346979176|gb|EGY22628.1| hypothetical protein VDAG_04066 [Verticillium dahliae VdLs.17]
Length = 828
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 110/253 (43%), Gaps = 52/253 (20%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L ++ L L+N RV ID++ W Q Q P
Sbjct: 1 MGIKGIYRELGPGQRISLAKLATESLENTGRPLRVAIDIAIWQFQTQAAKGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+RL L+ L +FV DG I ++R SG
Sbjct: 57 -IRTLFYRLVRLVGLPVQPVFVFDGPNKPI----FKRNKRSG------------------ 93
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
G + + AK L G P + EAEA+CALL E L D S D D +FG
Sbjct: 94 -RGDGIASAM--AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCS 150
Query: 173 TVYRDIWL--GERG-----YVVCYEMDDIERKL---GFGRNSLITLALLLGSDY-SQGVR 221
+R+ W G RG +V Y+ + E+ L G R+ ++ +AL+ G DY +GV
Sbjct: 151 RTFRN-WSAEGSRGGKSPTHVTVYDTN--EQSLIASGLDRHGMVLVALMSGGDYLPEGVP 207
Query: 222 GLGPESACQIVKS 234
G G + AC++ ++
Sbjct: 208 GCGLKLACEVARA 220
>gi|449330042|gb|AGE96307.1| DNA repair protein rad2 [Encephalitozoon cuniculi]
Length = 562
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
E S ++ K++ +P ++ EA+ QC + ++ DG + D+D+ L+G TVYR
Sbjct: 384 EISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYR 442
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK--S 234
+ + +R + Y +D IER+L R +LITL+ LLGSDY+ GV+G+GP A + ++ S
Sbjct: 443 NFFRKDR-EIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
Query: 235 VGD 237
VG+
Sbjct: 502 VGE 504
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV-NKSYRPQTDKLFLRGLF 58
MGV++LW IL+ S +K P ++ +D S WI Q ++ + K ++ L+
Sbjct: 1 MGVRSLWKILKPSAEKVTP----SGVKLAVDTSIWICQYGHLRSDDIVYFFSKRIVKLLY 56
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
HR+ IFV DG P +K RRR + + + + DKNL ++ + + G
Sbjct: 57 HRIHP--------IFVFDGKAPEMKRHAILQRRRRGNRTSINKIDKNLRRLDASEKPHGE 108
Query: 117 EFSCMIKEAK 126
+ S + +
Sbjct: 109 QGSVTFGDGR 118
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 27/260 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV +L D+L+ KK + L L +K + ID + Q ++ K P D
Sbjct: 1 MGV-DLGDLLK--KKPVELSDLSSKVIAIDAYNTLYQFLSIIRQKDGTPLKDSKGNITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGS------EVTQDDKNLDKM 107
L GL +R+ +L+ +FV DG P +K T +R+ + E Q++ ++
Sbjct: 58 LSGLLYRMSSLMEAGIRPVFVFDGKPPQMKSPTIEKRVQARENAQMKWEQAQEEGLAEEA 117
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ + ++++++ L ++G+P L+ E EAQ A + ++ D S D D
Sbjct: 118 YKYAQASSRVDATIVEDSRKLLNAMGIPFLDAPSEGEAQAAYMVIKRDADYAGSQDYDSL 177
Query: 168 LFGARTVYRDIWL-GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA V R++ + G+R YV E+++ L R LI +AL +G+DY
Sbjct: 178 LFGAPRVVRNLTVSGKRKLPKKNLYVDVKPEVMELEETLLGLDVTREQLIDIALCVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVG 236
+QG+ +GP+ A ++VK G
Sbjct: 238 NQGITNIGPKKALKLVKEHG 257
>gi|85014439|ref|XP_955715.1| DNA repair protein [Encephalitozoon cuniculi GB-M1]
gi|19171409|emb|CAD27134.1| similarity to DNA repair protein RAD2 (fragment) [Encephalitozoon
cuniculi GB-M1]
Length = 562
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 4/123 (3%)
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
E S ++ K++ +P ++ EA+ QC + ++ DG + D+D+ L+G TVYR
Sbjct: 384 EISRVLGLVKSVLEVFNIPYVDAPMEADGQCGFMCHNNVVDGVITEDNDVLLYGG-TVYR 442
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK--S 234
+ + +R + Y +D IER+L R +LITL+ LLGSDY+ GV+G+GP A + ++ S
Sbjct: 443 NFFRKDR-EIEKYSLDRIERELQLDRKNLITLSYLLGSDYTDGVKGIGPVKALEAIRKGS 501
Query: 235 VGD 237
VG+
Sbjct: 502 VGE 504
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV-NKSYRPQTDKLFLRGLF 58
MGV++LW IL+ S +K P ++ +D S WI Q ++ + K ++ L+
Sbjct: 1 MGVRSLWKILKPSAEKVTP----SGVKLAVDTSIWICQYGHLRSDDIVYFFSKRIVKLLY 56
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
HR+ IFV DG P +K RRR + + + + DKNL + + + G
Sbjct: 57 HRIHP--------IFVFDGKAPEMKRHAILQRRRRGNRTSINKIDKNLRCLDASEKPHGE 108
Query: 117 EFSCMIKEAK 126
+ S + +
Sbjct: 109 QGSVTFGDGR 118
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI S K L H ++V ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLTSVNGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G F+R L+ ++V DG P +K +R E ++ N
Sbjct: 61 TSHLMGTFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDETQKLLRAAEEAGNA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + KEAK L +G+P ++ EAEAQCA L + D
Sbjct: 121 EDIEKFNRRLVKVTKEHAKEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + V + D + + LG + I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNVLLRRLTFSEARKMPVQEFHFDKVLKDLGLNHDEFIDLCIMLGCDYTSSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKT 252
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 33/350 (9%)
Query: 1 MGVKNLWDILESCK----KTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+ L ++ C K + + ++V ID S I Q Q+ N D
Sbjct: 1 MGIHQLAKLIADCAPSSVKENEMKNYFGRKVAIDASMSIYQFLIAVRQDGNVLTNEDGDT 60
Query: 52 L-FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R ++ ++V DG P +K +R E +++
Sbjct: 61 TSHLMGMFYRTIRMVDHGIKPLYVFDGKPPDLKSGELSKRAEKREEAEKALAKAEEEGET 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ ++ +R + +E K L +G+P L+ EAEAQCA L + D
Sbjct: 121 ENVNKYQRRLVKVTKEHNEECKKLLTFMGIPYLDAPGEAEAQCAELVKAGKVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ TV R + E + C Y +++I +L ++ I L +LLG DY +RG
Sbjct: 181 DSLTFGSSTVVRHMTFSEARKMPCQEYNLNNILAELELSQDEFIDLCILLGCDYCDSIRG 240
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN- 281
+GP+ A +++ + E ++ + K + +GW +K + L ++ NV
Sbjct: 241 IGPKRAIDLIRQ-------HKTIEEVIAHLDSKKYTVPDGWLYK---EARELFKKPNVTA 290
Query: 282 GTDHSLQRETPFSQ-VIDAYSNPKCYSAD---SEAVHRVLAQHLFQHARL 327
G D L+ P +ID S K ++ D + A + A+H RL
Sbjct: 291 GVDIELKWIDPDEDGLIDYMSKQKGFAEDRIKNGAKKLLKARHTSTQGRL 340
>gi|424513647|emb|CCO66269.1| DNA excision repair protein Rad2 [Bathycoccus prasinos]
Length = 1311
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M +E + L + LG+P + EEAEA+CA LN DG F++DSD+FLFGA V+R+ +
Sbjct: 874 MYREVQELLMLLGIPYVVAPEEAEAECAHLNRTGKVDGVFTNDSDVFLFGATLVFRNAFE 933
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ + Y+ IE++LG R +I LA+LLGSDY+ G+ G+G +A +++ D
Sbjct: 934 NTKA-IQMYKSSRIEKQLGLNRERMIQLAMLLGSDYTVGIDGIGIVNAMEVLAGFSDADK 992
Query: 241 LQRIAS-EGLSFVKR-----------AKNSKKEGWSFKCNNKEESLNQEINVNG 282
S EGL K+ AK +K K +EE + +I+ NG
Sbjct: 993 ENGAESLEGLKQFKKWTENQTLSLPGAKGAKVRKHLEKIKIEEEKVKMQIDDNG 1046
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR--PQTDKLFLRGLF 58
MGVK+LW ILE + + L L K + +D S W++Q + R P + L G
Sbjct: 1 MGVKDLWTILEPSAERVNLDALTGKTIAVDASIWMMQFLKAMRDDRGEPIANAHIL-GFL 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ L +FV DG P IK + R R
Sbjct: 60 KRIIKLLHLRVFPVFVFDGKTPGIKRACVRER 91
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 141/302 (46%), Gaps = 35/302 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR-----------GLFHRLR 62
KK + + L+NK V ID I Q + S R + D LR G+F++
Sbjct: 11 KKNISITDLKNKTVAIDSMNIIYQFLS---SIRLR-DGAPLRNSKGEITSPYNGIFYKTI 66
Query: 63 ALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS----EVTQDDKNLDKMSSLRRNMGS 116
L+ I+V DG P +KL T RR++ + E+ + ++N++ M + +
Sbjct: 67 YLLNNEITPIWVFDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINY 126
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTV 174
+ K L +G+P ++ E EAQCA + N ++ C S D D L+GA
Sbjct: 127 LEPNTVDNCKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYC--VVSQDYDALLYGAPRT 184
Query: 175 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
R+I + + E++DI + L + LI +A+L+G+DY+ G++G+GP+ A I+K
Sbjct: 185 VRNITASNKP-LELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIK 243
Query: 234 SVGDNVVLQRIASEGLSFVKRA-KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
+ N ++ I E +K KN K ++ KE+ + N+ G L E
Sbjct: 244 NKKMNEYIKDI--ENYEEIKNIFKNPKVVDYT-----KEDIKLKSPNIEGLKEFLIEEND 296
Query: 293 FS 294
FS
Sbjct: 297 FS 298
>gi|390371157|dbj|GAB65038.1| DNA repair endonuclease [Plasmodium cynomolgi strain B]
Length = 1505
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ + + V YE
Sbjct: 1179 FGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FFNRKKTVEVYER 1237
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1238 KHIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1280
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 39/266 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR----- 55
MGV +L D+LE ++ + L L K + +D + Q ++ + Q D LR
Sbjct: 1 MGV-DLGDLLE--REKIELEELAGKLIAVDAFNTLYQFLSIIR----QQDGTPLRDGSGR 53
Query: 56 ------GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ-----DDKNL 104
G+ +R+ L+ ++FV DG P K T +R + S + ++ L
Sbjct: 54 TTSHLSGILYRMTNLLEAGAKVVFVFDGEPPRFKRETLDQRAETRSRAEEMWQRAKEEGL 113
Query: 105 D--KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
D K + + E MI +A L ++G+P ++ E EAQ A + ++ D S
Sbjct: 114 DGFKYAQAASRLEDE---MIADAMRLLEAMGIPAVQAPSEGEAQAAFMAIKGDVDLVGSQ 170
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVCY----EMDDIERKLGFGRNSLITLALL 211
D D LFGA V R++ + G+ YV +D+ +LG R L+ + ++
Sbjct: 171 DYDALLFGAPRVVRNMAITGKRKLPGKNVYVEVMPEVISLDEELLRLGIARRQLVEIGIM 230
Query: 212 LGSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++G++ +GP++A +++K G+
Sbjct: 231 CGTDYNEGLKRVGPKTALKLIKEHGN 256
>gi|67589751|ref|XP_665434.1| RAD2 [Cryptosporidium hominis TU502]
gi|54656123|gb|EAL35205.1| RAD2 [Cryptosporidium hominis]
Length = 1158
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 190
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 900 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 957
Query: 191 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 234
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 958 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 1002
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR---PQTDKLFLRGL 57
MGVK LWDI+ + L+ + + ID S W+ Q K PQ L G
Sbjct: 1 MGVKGLWDIVAPSGIRVRPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLL--GF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F RL L+ + V DG+ P IK T R
Sbjct: 59 FKRLCKLLYYGILPVIVFDGTPPDIKKRTLELR 91
>gi|66356946|ref|XP_625651.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
gi|46226699|gb|EAK87678.1| XPG, DNA excision repair protein, flap endonuclease
[Cryptosporidium parvum Iowa II]
Length = 1147
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 190
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 889 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 946
Query: 191 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 234
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 947 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 991
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR---PQTDKLFLRGL 57
MGVK LWDI+ + L+ + + ID S W+ Q K PQ L G
Sbjct: 1 MGVKGLWDIVAPSGIRVKPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLL--GF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F RL L+ + V DG+ P IK T R
Sbjct: 59 FKRLCKLLYYGILPVIVFDGTPPDIKKRTLELR 91
>gi|34558672|gb|AAQ75078.1| RAD2 [Cryptosporidium parvum]
Length = 1147
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE 190
+LG+P ++ EAEAQ ++L ++C G S DSD +FGA+ ++R+ + G V Y+
Sbjct: 889 ALGIPWIDSPGEAEAQASILTQLNICHGVLSDDSDCLIFGAKKIFRNFFSG--NSVEMYD 946
Query: 191 MDDIERKLGFGRN-SLITLALLLGSDYSQGVRGLGPESACQIVKS 234
++ +++ LG + LA+LLG DY+ GV G+GP +A +++K+
Sbjct: 947 LNQVKKYLGIEKQEQFYILAILLGCDYTVGVNGIGPVNAVEVLKA 991
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR---PQTDKLFLRGL 57
MGVK LWDI+ + L+ + + ID S W+ Q K PQ L G
Sbjct: 1 MGVKGLWDIVAPSGIRVKPETLEGQILAIDASIWLKQFLMGLKDKEGKIPQGAHLL--GF 58
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
F RL L+ + V DG+ P IK T R
Sbjct: 59 FKRLCKLLYYGILPVIVFDGTPPDIKKRTLELR 91
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART---VYRD 177
+++E L G+P + EAEAQCA L L DG + DSD LFG + VYR
Sbjct: 1002 ILRECHDLLSLFGIPFITSPTEAEAQCAELFALGLIDGVVTEDSDTLLFGKSSDMVVYRH 1061
Query: 178 IWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
++ Y C M DIE+ +G R+ LI LA+LLG DY+ GV+G+G +A +I+
Sbjct: 1062 LFQQPEKY--C--MSDIEKTIGVNRDDLINLAMLLGCDYTAGVKGIGIVNAMEII 1112
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKLFLRGLFH 59
MGV LW++++ + L L+ + + ID S WI K R + L G F
Sbjct: 41 MGVPKLWELVQPSGSYVELRDLEGQTLAIDASIWIHSFIRAFKDSRGDPAENAHLLGFFW 100
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYR-RRLNSGSEVTQDDKNLDKMSSLR 111
R+ L+ IFV DG+IP +K T RR + + Q +KN KM L+
Sbjct: 101 RICKLLQHRIKPIFVFDGNIPYLKQRTINERRKRRENSLAQLEKNQRKMVLLK 153
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 16/237 (6%)
Query: 13 CKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVN-------KSYRPQTDKLFLRGLFHRLRAL 64
KK++ L NK++ ID I Q L ++ K+ +T + G+F++ +
Sbjct: 10 SKKSISKKELNNKKIVIDAMNVIYQFLSSIRLRDGTPLKNSSGETTSAY-NGIFYKTINM 68
Query: 65 IALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE------VTQDDKNLDKMSSLRRNMGSEF 118
+ + I+V DG +K T R + + V + +++ +KM + M
Sbjct: 69 LEMGLTPIWVFDGQAHELKEITREERRKTRQKALSEYLVAKKEEDTEKMQKFAKRMNYLD 128
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ M+ K L +GVP L E EAQCA + + S D D L+GA V R+I
Sbjct: 129 TNMVLNCKRLLDLMGVPHLTSGSEGEAQCAEIVKKGDAFAVVSQDYDSLLYGADRVIRNI 188
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 234
E+ D+ +L R+ LI +++L+G+DY+ +GV+GLGP+ A +VK+
Sbjct: 189 TSSSSKEFEYIELKDVLDELDINRSQLIDMSILIGTDYNPKGVKGLGPKKALDVVKN 245
>gi|255717633|ref|XP_002555097.1| KLTH0G01298p [Lachancea thermotolerans]
gi|238936481|emb|CAR24660.1| KLTH0G01298p [Lachancea thermotolerans CBS 6340]
Length = 675
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 48/286 (16%)
Query: 1 MGVKNLWDILESCK--KTLPLHHL---------QNKRVCIDLSCWIVQLQNVN------- 42
MGV WD+++S + + LPL + R+ ID W+ + ++
Sbjct: 1 MGVPAFWDLIKSDESLRRLPLKQFVVEFRNNFNRPLRLAIDAFTWLFESGFISNDCERLS 60
Query: 43 -KSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRL-NSGSEVTQ 99
K YR + L +RL+ L++L+ + V DG + P+ K + L N E+
Sbjct: 61 EKGYRTDAQSTLI--LLNRLKCLLSLDVTFVLVFDGPMKPSFKNKFSSKTLSNDHCELAS 118
Query: 100 DDKNLDKMSSLRRNM----GSEFSCMIKE-------AKALGLSLGVPCLEGVEEAEAQCA 148
DD+ + + R G+ + ++ E K L ++ + +E E EA+CA
Sbjct: 119 DDEEYVSIYNEHRKQHEIHGTCTTTLVSEELGGLSFVKRLLKTMNISFIETCGEGEAECA 178
Query: 149 LLNLESLCDGCFSSDSDIFLFGARTVYRDI---W----------LGERGYVVCY-EMDDI 194
L E L D S+DSD +FGA V R+ W L ++ + + + D+
Sbjct: 179 RLQREGLVDYVLSNDSDTLVFGATRVLRNFSRFWEDVPATYTGPLKKKDHKEMFITVVDM 238
Query: 195 ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
++ + R+SL+ LLG+DY+QG+RGLG + A ++ + N
Sbjct: 239 QQIRNWNRSSLVLYCTLLGADYNQGIRGLGSKKAAKLAQLTTPNFA 284
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 36/289 (12%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MGV K L+D K L +R+ ID S + Q K ++ Q+ +L
Sbjct: 41 MGVLGLSKLLYDRAPGAIKEKELKCYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTND 100
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L G+F R +I I+V DG P++K S R E
Sbjct: 101 AGEVTSHLNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQRAEEAKHEYEKAKE 160
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + E + E K L +G+P ++ EAEAQCA L +
Sbjct: 161 EGDDEAMEKMSKRMVRVSRE---QMDEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKAW 217
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGAR + R + GE + + Y ++DI G I L +LLG D
Sbjct: 218 AVGTEDMDALAFGARVMLRHLTYGEAKKRPIAEYHLEDILELAGMTMEQFIDLCILLGCD 277
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVL-------QRIASEGLSFVKRAKN 257
Y + G+GP A + +K G + + EG ++V+ A+N
Sbjct: 278 YVPKIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEGFNYVE-ARN 325
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 10/183 (5%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MI + + + G+P EAEAQCA L L +G + DSD+FLFG V+++++
Sbjct: 972 MITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGIITDDSDVFLFGGLRVFKNMF- 1030
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ V C+ + D+ R+L R+ LI LA LLGSDY G+ +GP A ++++
Sbjct: 1031 NQSKTVECFLLSDLGRELSLDRDKLIRLAYLLGSDYVDGLPKVGPVVAMELLREFPGEDG 1090
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L + E V+ K+ K + ++ D L + P S V DAY
Sbjct: 1091 LHKF-KEWWVKVQSGKD--------KPADNATPFRRKFKKRYKDLYLPVDWPNSNVRDAY 1141
Query: 301 SNP 303
S+P
Sbjct: 1142 SHP 1144
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L G+F+R L+ I+V DG P +K L R+ + + K K+ +
Sbjct: 11 LNGVFYRTVNLLEEGIIPIYVFDGKPPELKAQELENRRKMKEEAEKKLEKAKESGKVEEM 70
Query: 111 RR--NMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ M S + M KE+K L +GVP ++ E EA+ A LN + + S D D
Sbjct: 71 RKYSQMTSRLTTDMAKESKELLEYMGVPTVQAPSEGEAEAAYLNAKGITYASASQDYDSL 130
Query: 168 LFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA + R++ + G+R YV E + +KL R LI +A+L+G+DY
Sbjct: 131 LFGAEKLIRNLTISGKRKLPNKDVYVEVKPELIETASLLKKLEITREQLIDIAILVGTDY 190
Query: 217 S-QGVRGLGPESACQIVKS 234
+ GVRG+GP+ A +++K+
Sbjct: 191 NPDGVRGIGPKKAYKLIKT 209
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 34/273 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MGV N+ DI+ + + L+ K + +D + Q ++ + +P L
Sbjct: 1 MGV-NIADII--IAHEINIKELKGKIISVDAYNALYQFLSIIR--QPDGTPLRDHAGRVT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLD 105
L GL +R +A ++V DG P +K+ T R+ E + + NL+
Sbjct: 56 SHLSGLLYRTANFLAEGIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLE 115
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ S + M+ EAK L +G+P ++ E EAQ A + + S D D
Sbjct: 116 EARSKAQQATFLTKNMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFD 175
Query: 166 IFLFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGS 214
LFGA + R++ + G+R YV V E+ +E + LG R L+ + +L+G+
Sbjct: 176 SLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGT 235
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 247
DY++G++G+GP++A +++K G L++I E
Sbjct: 236 DYNEGIKGVGPKTALKLIKKYGS---LEKIIQE 265
>gi|429848013|gb|ELA23547.1| flap structure-specific endonuclease [Colletotrichum
gloeosporioides Nara gc5]
Length = 542
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 142/336 (42%), Gaps = 70/336 (20%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L S ++ L HL++ RV ID++ W Q Q P
Sbjct: 1 MGIKGIYRELGSGQRVSLAKLATEHLESSGRPLRVAIDIAIWQFQTQAARGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ L IFV DG PA K + +R G T K L ++
Sbjct: 57 -IRTLFYRLVRLLGLAIHPIFVFDGPHKPAFKRN--KRSGKGGGVATAMAKRLIRL---- 109
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G P + EAEA+CALL + + D S D D +FG
Sbjct: 110 --------------------FGFPVHDAPGEAEAECALLQQQGIVDAVLSEDVDTIMFGC 149
Query: 172 RTVYRDIWLGE--RG-----YVVCYEMDD-IERKLGFGRNSLITLALLLGSDY-SQGVRG 222
R+ W E RG +V Y++D + G R ++ +AL+ G DY +GV G
Sbjct: 150 TRTLRN-WSSEGIRGSKTPTHVNLYDVDVLLSAGTGLDREGMVLVALMSGGDYIPEGVPG 208
Query: 223 LGPESACQIVKS-VGDNVVLQRI-----ASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
G + AC+ K+ G ++ +I E +F+K + + G+ F+ +K ++
Sbjct: 209 CGVKLACEAAKAGFGKSLCRLKIDEPVQFEEWRTFLKHQLRTNECGF-FRTKHKALAIPD 267
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEA 312
E P QV+ Y++P +A++ A
Sbjct: 268 EF-------------PSRQVLRHYTHPVVSNAETIA 290
>gi|68488322|ref|XP_711995.1| hypothetical protein CaO19.652 [Candida albicans SC5314]
gi|46433350|gb|EAK92794.1| hypothetical protein CaO19.652 [Candida albicans SC5314]
Length = 684
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L+ S K + L L ++ RV ID +I Q + + + D
Sbjct: 1 MGIPELWDLLKPSFGKRISLDELVDQSIKERQRPPRVAIDAYSFIFQADHSSIIVE-EKD 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ AL+ LN +I V DG + +KL + + N G + + L +S+
Sbjct: 60 GVLMQNVMAKILALVGLNISVIVVFDGILKPLKL---KSKENEGLIYEDELQRLALISNY 116
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
SE++ + + K + + ++ E EAQCA L + D S D D +FG
Sbjct: 117 -----SEYNPFVVQLKIELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFG 171
Query: 171 ARTVYR-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
AR V R DI YV +MD +E++ G + L+ LA L G
Sbjct: 172 ARRVLRNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMDKVEQETGLTTSRLVFLASLRG 231
Query: 214 SDYSQGVRGLG 224
DYS G + +G
Sbjct: 232 GDYSVGAKKMG 242
>gi|320593627|gb|EFX06036.1| flap structure-specific endonuclease [Grosmannia clavigera kw1407]
Length = 749
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 109/252 (43%), Gaps = 51/252 (20%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTDK 51
MG+K ++ + + ++ + LH L + R+ ID+S W Q+Q P
Sbjct: 1 MGIKGIYKEIGAGRR-IALHRLAVESLETRGRPLRLAIDISIWQFQIQAARGGANPA--- 56
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+R LF+RL L+ + IFV DG + PA K + +R S T K L ++
Sbjct: 57 --IRTLFYRLVRLLGIPIQPIFVFDGPNKPAFKRN--KRSAKSDGTATAMAKRLIRL--- 109
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
F M +A EAEA+CALL + D S D D +FG
Sbjct: 110 -------FGFMAHDAPG--------------EAEAECALLQQRGVVDAVLSEDVDTIMFG 148
Query: 171 ARTVYRDIWLGERG------YVVCYEMDDIER-KLGFGRNSLITLALLLGSDY-SQGVRG 222
R+ W +V YE D +++ K G R ++ +AL+ G DY +G+ G
Sbjct: 149 CTRTLRN-WSSATATTSPPTHVSMYETDSLQQDKSGLDREGMVLVALMSGGDYLPEGIPG 207
Query: 223 LGPESACQIVKS 234
G + ACQ K+
Sbjct: 208 CGVKLACQAAKA 219
>gi|406860923|gb|EKD13979.1| hypothetical protein MBM_07656 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1010
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 41/219 (18%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKL 84
R+ ID+S W Q+Q+ P +R L++RL L++L+ +FV DG P +K
Sbjct: 34 RLAIDISIWQFQIQSGQGGSNPA-----IRTLYYRLIRLLSLSIQPLFVFDGPQRPQLKR 88
Query: 85 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 144
+ +R+ G G+ S M AK L G PC EAE
Sbjct: 89 N---KRVGRG--------------------GASASDMA--AKQLLKLFGFPCHNAPGEAE 123
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG-----YVVCYEMDDI-ER 196
A+CALL + + D S D D +FG+ RD W G RG +V ++ E
Sbjct: 124 AECALLQRKGIVDAVLSEDVDTLMFGSGITLRD-WSSEGARGSKAPTHVSLFDAKKTKEG 182
Query: 197 KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +ALL G DY + G+ G+G + ACQ ++
Sbjct: 183 SSGLDREGMILVALLSGGDYNTDGLPGIGIKVACQAARA 221
>gi|393229980|gb|EJD37593.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 150/377 (39%), Gaps = 80/377 (21%)
Query: 1 MGVKNLWDILESCKKT-----LPLHHLQ-------NKRVCIDLSCWIVQLQNVNKSYRPQ 48
MGVK LW +L+ ++ L +H + RV ID+S W+ ++ V +
Sbjct: 1 MGVKGLWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMK-VFDGTPLR 59
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
++L L+ LF R L+A+ +FV DG +K Y+R + T ++
Sbjct: 60 VEQLGLQMLFFRCARLLAMPILPLFVFDG----LKRPAYKR-----GKTTH--YTTPRIE 108
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+N+ S F ++A EAEA A LN L D ++ D D FL
Sbjct: 109 GYAQNIISSFGFEWRKAPG--------------EAEADLAWLNSMGLIDAVWTDDGDAFL 154
Query: 169 FGARTVYRDIW-----------LGERG-----YVVCYEMDDI--ERKLGFGRNSLITLAL 210
FGA TV R+ L G V + +D+ + RN LI +AL
Sbjct: 155 FGATTVMRNPGKNLSSNIRSPALTTEGKQNENQVHVFHAEDLIDNENIRLDRNGLILVAL 214
Query: 211 LLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNK 270
L G DY +G+ G+G A + + A G + ++ E + +
Sbjct: 215 LRGGDYHEGIDGVGMTIAHALAR-----------AGFGDTLAAAMQSPDVETLAGMISQW 263
Query: 271 EESLNQEINVNGTDH----------SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
L QE+ + H S+ + P V +AY+NP + + A++ +
Sbjct: 264 RSELVQELRTDSQGHLGRRHPAVAASIPLDFPDLDVYNAYANPVVSNLGTVAINWYRLPN 323
Query: 321 LFQHARLHQVCAQFFQW 337
L L Q C + F+W
Sbjct: 324 L---TGLAQACERHFEW 337
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 35/291 (12%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR-PQTDKL--- 52
MG+ K L+D + + L + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R ++ I+V DG P +K S + R E Q
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+D+ ++KMS + E ++EAK L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGNDELMEKMSKRTVRVSRE---QLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGA + R + E + + + +D+I G I L +LLG D
Sbjct: 178 AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y + G+GP+ A + +K GD L L + ++S EG+ ++
Sbjct: 238 YVPKISGIGPQKAWEGIKKHGDIETL-------LQSLDAGRHSVPEGFHYE 281
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M ++ K L G+P ++ EAEAQC+ LN ++ CD S DSD+ +F +TV ++ +
Sbjct: 1134 MNEDIKILLNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKN-FF 1192
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ V YE IE KLG ++ LI L+LL G DY+ GV G+G +A +I+K+
Sbjct: 1193 NRKKTVEVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKA 1246
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI K L H ++V ID S + Q +S Q +
Sbjct: 1 MGILGLAKLIADIAPHAIKEKELKHYFGRKVAIDASMCLYQFLIAVRSEGAQLATVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R L+ I+V DG P +K +R E ++ N
Sbjct: 61 TSHLMGMFYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + EAK L +G+P +E EAEAQCA L + D
Sbjct: 121 EDIEKFNRRLVKVTQVHADEAKQLLKLMGIPYVEAPCEAEAQCAALVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + V + D + LG ++ I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNVLLRRLTFSEARKMPVQEFHHDKVLEGLGLNQDEFIDLCIMLGCDYTNSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAMELIKT 252
>gi|409044610|gb|EKM54091.1| hypothetical protein PHACADRAFT_185071 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1025
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 150/388 (38%), Gaps = 95/388 (24%)
Query: 1 MGVKNLWD-----ILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVN 42
MGV+ LW+ ILE ++ L + + R+ ID S W ++
Sbjct: 1 MGVQGLWEAFSAQILEPAGQSRSLTKIAVVDGFEGNESGRRGYRIGIDASIWYQHGEHST 60
Query: 43 KS-YRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD 101
K+ P+ LR LF RL L L ++FV DG R L GS V +
Sbjct: 61 KAGANPE-----LRLLFFRLARLAKLPWLVLFVFDGR--------ERPTLKRGSRVGK-- 105
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
S N+ EF MI+ G+ EAEA+ A LN + + D +
Sbjct: 106 -------SGTHNLTQEFKAMIE-------CFGMEWRMARGEAEAELAYLNAQGIIDAIIT 151
Query: 162 SDSDIFLFGARTVYRDI--------------WLGERG--YVVCYEMDDI--ERKLGFGRN 203
D D +FGARTV R+ LG++ + + + D I +G R
Sbjct: 152 DDVDTLVFGARTVIRNSSITLAGNRNNPATDALGQKSDQHTMVFTSDRIGSHPNIGLTRG 211
Query: 204 SLITLALLLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEG--LSFVKRAKNSKK 260
++ +ALL G DY GV+GLGP+ A + + GD ++ E +++ R
Sbjct: 212 GMVLIALLSGGDYDNGVKGLGPKIAHGLARCGFGDRLLTAYRTGEAHFRAYLPR------ 265
Query: 261 EGWSFKCNNKEESLNQEINVNG--------TDHSLQRETPFSQVIDAYSNPKCYSADSEA 312
W + LN E+ N + ++ P + AY NP C + + +
Sbjct: 266 --W-------RDELNTELRTNASGMLPHCCSSAAVSPNWPDMITLTAYFNPVCSALNGQG 316
Query: 313 VHRVLAQHL--FQHARLHQVCAQFF-QW 337
+ Q RL + C F +W
Sbjct: 317 TSSLALQDRDDLSLPRLAKFCEDHFDEW 344
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR L +G EV +
Sbjct: 28 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRALEAG-EVEE 86
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 87 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 139
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 140 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQLIAV 199
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ G+RG GP++A ++VKS+GD
Sbjct: 200 GILLGTDYNPGGIRGYGPKTALRLVKSLGD 229
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 15/199 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK-NLDKMSSLRR 112
L GL +R LI + I+V DG P K RR E + K L+ ++
Sbjct: 58 LSGLLYRNANLIEIGIKPIYVFDGEPPEFKKKELERRAELKKEAEEKWKIALEAGEDAKK 117
Query: 113 NMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ +++ +K L LG+P ++ E EAQ A + + D S D D LF
Sbjct: 118 YAQATAKVDEYIVESSKTLLEYLGIPYVQAPSEGEAQAAYMVRKGDADYTGSQDYDSLLF 177
Query: 170 GARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQ 218
G+ + R++ + G+ YV + E+ D+E +KLG R LI +A+L+G+DY++
Sbjct: 178 GSPKLARNLTVTGKRKLPGKNVYVEIKPEIIDLEANLKKLGITREQLIDVAILVGTDYNE 237
Query: 219 GVRGLGPESACQIVKSVGD 237
GV+G+G + A + VK+ GD
Sbjct: 238 GVKGIGAKKALKYVKTYGD 256
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 34/273 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MGV N+ DI+ + + L+ K + +D + Q ++ + +P L
Sbjct: 1 MGV-NIADII--IAHEINIKELKGKIISVDAYNALYQFLSIIR--QPDGTPLRDHAGRVT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLD 105
L GL +R +A ++V DG P +K+ T R+ E + + NL+
Sbjct: 56 SHLSGLLYRTANFLAEGIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWEKALKEGNLE 115
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ S + M+ EAK L +G+P ++ E EAQ A + + S D D
Sbjct: 116 EARSKAQQATFLTKDMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDTYASASQDFD 175
Query: 166 IFLFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGS 214
LFGA + R++ + G+R YV V E+ +E + LG R L+ + +L+G+
Sbjct: 176 SLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQLVDIGILVGT 235
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 247
DY++G++G+GP++A +++K G L++I E
Sbjct: 236 DYNEGIKGVGPKTALKLIKKYGS---LEKIIQE 265
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 31/287 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF--- 53
MG+ K + DI S K L H ++V ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADIAPSAIKEQELKHYFGRKVAIDASMCLYQFLIAVRSDGAQLTSVHGET 60
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDD 101
L G F+R L+ ++V DG P +K +R L +E +
Sbjct: 61 TSHLMGTFYRTIRLVEQGIKPVYVFDGKPPDLKGGELAKRDERRDETQKLLQAAEEAGNA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K+++K + + E + E K L +G+P ++ EAEAQCA L +
Sbjct: 121 KDIEKFNRRLVKVTKEHAL---ETKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATAT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG + R + E + V + D + LG N I L ++LG DY+
Sbjct: 178 EDMDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLEDLGLNHNEFIDLCIMLGCDYTSS 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
++G+GP+ A +++K+ G L++I + K S E W++K
Sbjct: 238 IKGVGPKRAIELIKTHGS---LEKIVEN----LDTKKFSIPEDWNYK 277
>gi|255722695|ref|XP_002546282.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136771|gb|EER36324.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 689
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 36/251 (14%)
Query: 1 MGVKNLWDIL----------ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LW++L + +H + R+ ID +I Q + + + D
Sbjct: 1 MGIPELWELLKPGFSRRVSIDELVDEFIKNHQRTPRIAIDAYSFIFQADHSSITVE-DKD 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ ALI LN ++ V DG +K + + NSG Q+ + L + S
Sbjct: 60 TILIQNVMSKILALIGLNISVVVVFDG---VLKPQKTKSKENSGMMYEQELERLSLIGSC 116
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
SE ++++ K + ++ E EAQCA L + D C S D D +FG
Sbjct: 117 -----SEHHPVVEKVKDQLRRNKINYVQAAGEGEAQCAYLQKLGIVDYCLSQDGDALVFG 171
Query: 171 ARTVYR-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
A V R D L + YV ++ IE++ G LI LA L G
Sbjct: 172 ANKVLRNFSKYLEDIGRSPSKKSDAKLKQTYYVTPVDIKVIEKETGLSVERLIFLASLRG 231
Query: 214 SDYSQGVRGLG 224
DYS GVR +G
Sbjct: 232 GDYSAGVRKIG 242
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR L +G EV +
Sbjct: 28 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRALEAG-EVEE 86
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 87 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 139
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 140 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQLIAV 199
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ G+RG GP++A ++VKS+GD
Sbjct: 200 GILLGTDYNPGGIRGYGPKTALRLVKSLGD 229
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI K L H +++ ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G FHR L+ ++V DG P +K +R E ++D N+
Sbjct: 61 TSHLMGTFHRTIRLVEQGIKPVYVFDGKPPNLKSGELAKRAERRDEAQKLLQAAEEDGNV 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + EAK L +G+P ++ EAEAQCA L + D
Sbjct: 121 EAIDKFSRRLVKVTKNHADEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + L E + E MD + L + I L ++LG DY+ ++G
Sbjct: 181 DALTFGCDILLRRLTLSEARKLPVQEIHMDKVLTGLELNHDEFIDLCIMLGCDYTGSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKN 252
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 26/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV +L ++E + + L L N+ V +D + Q ++ + P D
Sbjct: 1 MGV-DLGGLVEP--REIELKELNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+ +R+ L+ +FV DG P+ K T + R Q + S
Sbjct: 58 LSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKARAEVREAARQMYEAAKAAGSAEAY 117
Query: 114 MGSEFSC-----MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
++ S ++ +AK L +G+P + E EAQ A + D S D D L
Sbjct: 118 KYAQASTSINRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLL 177
Query: 169 FGARTVYRDIWLGERGYVV-----------CYEMDDIERKLGFGRNSLITLALLLGSDYS 217
FGA V R+I + + V E+ ++ LG R LI +A+L+G+DY+
Sbjct: 178 FGAPRVVRNIAITGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYN 237
Query: 218 QGVRGLGPESACQIVKSVGDNV 239
G+ +GP++A ++VK GDN+
Sbjct: 238 PGIFKVGPKTALKLVKKHGDNM 259
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 126/291 (43%), Gaps = 35/291 (12%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR-PQTDKL--- 52
MG+ K L+D + + L + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R ++ I+V DG P +K S + R E Q
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+D+ ++KMS + E ++EAK L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGNDELMEKMSKRTVRVSRE---QLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGA + R + E + + + +D+I G I L +LLG D
Sbjct: 178 AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y + G+GP+ A + +K GD L L + ++S EG+ ++
Sbjct: 238 YVPKIPGIGPQKAWEGIKKHGDIETL-------LQSLDAGRHSVPEGFHYE 281
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
L++ G+ M + AL + GVP + EAEA A ++L D S DSD +F
Sbjct: 1420 LQQQTGNVTERMKDQVVALLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVF 1479
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESAC 229
GAR +YR+ + ++ V YE I KLG + LI LA+LLG DY+ GV+G+G +A
Sbjct: 1480 GAREIYRNFFENKK-SVEMYEASFIAHKLGLDQQQLILLAMLLGCDYTLGVKGIGIVNAV 1538
Query: 230 QIVKS 234
+++++
Sbjct: 1539 EVLRA 1543
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNK----SYRPQTDKLFLRG 56
MGVK LWD+L + + +L+ K V +D + W+VQ + K S P L G
Sbjct: 1 MGVKGLWDLLAPAGRRVAAGNLKGKIVAVDAAIWLVQFLHAMKLPDGSPMPAA---HLVG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
F+RL L+ I V DG P +K T L + Q +KNL
Sbjct: 58 FFNRLCRLLFFEIRPIIVFDGPPPFLKRQTL---LARKRQRQQQEKNL 102
>gi|68488283|ref|XP_712017.1| hypothetical protein CaO19.8267 [Candida albicans SC5314]
gi|46433375|gb|EAK92818.1| hypothetical protein CaO19.8267 [Candida albicans SC5314]
Length = 684
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L+ S K + L L ++ RV ID +I Q + + + D
Sbjct: 1 MGIPELWDLLKPSFGKRISLDELVDQSIKERQRPPRVAIDAYSFIFQADHSSIIVE-EKD 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ AL+ LN +I V DG + +KL + + N G + + L +S+
Sbjct: 60 GVLMQNVMAKILALVGLNISVIVVFDGILKPLKL---KSKENEGLIYEDELQRLALISNY 116
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
SE + +++ K + + ++ E EAQCA L + D S D D +FG
Sbjct: 117 -----SENNPFVEQLKIELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFG 171
Query: 171 ARTVYR-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
AR V R DI YV +MD +E++ G + L+ LA L G
Sbjct: 172 ARRVLRNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMDKVEQETGLATSRLVFLASLRG 231
Query: 214 SDYSQGVRGLG 224
DYS G + +G
Sbjct: 232 GDYSVGAKKMG 242
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 114/253 (45%), Gaps = 23/253 (9%)
Query: 1 MGVKNLWDILE--SCK--KTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-----YRPQTDK 51
MG+K L +L+ S K K PL + +KRV ID S I Q +S T
Sbjct: 1 MGIKQLSKLLKENSVKGIKERPLAYYSSKRVAIDASMSIYQFLIAVRSDGSTLGNGDTTT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEVTQ----DDKN 103
L GLF+R ++ L ++V DG P +K+ RR + E DK
Sbjct: 61 SHLVGLFYRTIRMVELGITPVYVFDGVPPEVKMKELGKRNERRATADKEYKDASEAGDKR 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L +M R+ + ++E K L +G+P EAEA CALL + G + D
Sbjct: 121 LMEMYDKRKTKVT--GIHVEECKRLLGLMGIPFETAPSEAEAYCALLCKKRAVYGVATED 178
Query: 164 SDIFLFGARTVYRDIWLGERGY---VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGV 220
D FG+ V R+ + G R VV Y + + L ++ I L +LLG DY +
Sbjct: 179 MDSLTFGSPVVLRN-FSGTRSKKLPVVEYNLRQLLEDLSLDQDEFIDLCILLGCDYCDTL 237
Query: 221 RGLGPESACQIVK 233
+G+GP+ A ++K
Sbjct: 238 KGIGPKKALGLIK 250
>gi|392589119|gb|EIW78450.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 386
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 151/382 (39%), Gaps = 74/382 (19%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRV---------------CIDLSCWIVQLQNVNKS 44
MG+K LW +L SC + H L + + I + I+
Sbjct: 26 MGIKGLWPLLAPSCTE----HQLSDFAISRALQGPLTPTSLDFTIGVDASILMYTTFKGQ 81
Query: 45 YRPQTD---KLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQD 100
R Q + L+ LF RL L A +FV DGS PAIK + + R
Sbjct: 82 KRAQINVGENDVLKTLFFRLLQLAATPARYLFVFDGSARPAIKRNKHVR----------- 130
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
S F +K KA ++G C + EAEA+ A LN + D
Sbjct: 131 -------------TSSPFP--VKGLKAFIRAMGFDCHDAPGEAEAELAALNGLGVIDAVM 175
Query: 161 SSDSDIFLFGARTVYRDIWLGERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
++DSD FLFGA+ V R + Y + Y + + + R L+ +ALL+G DY G
Sbjct: 176 TTDSDAFLFGAKCVLRMYVINHDPYTIQLYTQERLTNTVDLSRGGLVLMALLVGGDYHPG 235
Query: 220 VRGLGPESACQIVK-SVGDNVVLQRIASEGLSF----------VKRAKNSKKEGWSFKCN 268
+ G G +A + + GD++V + ++ + + A N +G F+
Sbjct: 236 LPGCGTATAYALAQYGFGDDLVDAMLHADQPNLSAFLATLRGQISHAANVDPKGL-FR-- 292
Query: 269 NKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLH 328
+K S++ SL RE P V++AY +P + + + RL
Sbjct: 293 SKRPSISA---------SLTREFPNVNVLNAYMHPATSVTRGDPLPILSPLMKIDIPRLA 343
Query: 329 QVCAQFFQWPPEKTDEYILPKI 350
++C + W ++ PK+
Sbjct: 344 ELCQRHLCWTSQEVMCKFRPKV 365
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 125/291 (42%), Gaps = 35/291 (12%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR-PQTDKL--- 52
MG+ K L+D + + L + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R ++ I+V DG P +K S + R E Q
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+D+ ++KMS + E ++EAK L +G+P ++ EAEAQCA L +
Sbjct: 121 EGNDELMEKMSKRTVRVSRE---QLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGA + R + E + + + +D+I G I L +LLG D
Sbjct: 178 AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y + G+GP+ A + +K GD L L + ++S EG+ ++
Sbjct: 238 YVPKIPGIGPQKAWEGIKKHGDIETL-------LQSLDAGRHSVPEGFHYE 281
>gi|302418945|ref|XP_003007303.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352954|gb|EEY15382.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 833
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 107/253 (42%), Gaps = 52/253 (20%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L ++ L L+N RV ID++ W Q Q P
Sbjct: 1 MGIKGIYRELGPGQRISLAKLATESLENTGRPLRVAIDIAIWQFQAQAAKGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R F+RL L+ L +FV DG P L +R G +
Sbjct: 57 -IRTFFYRLVRLVGLPVQPVFVFDG--PNKPLFKRNKRSGRGDGIA-------------- 99
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
S M AK L G P + EAEA+CALL E L D S D D +FG
Sbjct: 100 ------SAM---AKRLIRLFGFPIHQAPGEAEAECALLQQEGLVDAVLSEDVDTIMFGCS 150
Query: 173 TVYRDIWLGE--RG-----YVVCYEMDDIERKL---GFGRNSLITLALLLGSDY-SQGVR 221
+R+ W E RG +V Y+ + E+ L G R ++ +AL+ G DY +GV
Sbjct: 151 RTFRN-WSAEGLRGGKSPTHVTVYDTN--EQSLVASGLDRQGMVLVALMSGGDYLPEGVP 207
Query: 222 GLGPESACQIVKS 234
G G + AC++ ++
Sbjct: 208 GCGLKLACEVARA 220
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR + +G EV +
Sbjct: 28 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAG-EVEE 86
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 87 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 139
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 140 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAV 199
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ GVRG GP++A ++VKS+GD
Sbjct: 200 GILLGTDYNPGGVRGYGPKTALRLVKSLGD 229
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR + +G EV +
Sbjct: 28 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAG-EVEE 86
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 87 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 139
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 140 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAV 199
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ GVRG GP++A ++VKS+GD
Sbjct: 200 GILLGTDYNPGGVRGYGPKTALRLVKSLGD 229
>gi|451851921|gb|EMD65219.1| hypothetical protein COCSADRAFT_199395 [Cochliobolus sativus
ND90Pr]
Length = 777
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 56/264 (21%)
Query: 1 MGVKNLWDILESCKKTLPL------HHLQNK---RVCIDLSCWIVQLQNVNKSY--RPQT 49
MG+ LWDI++ ++ +P+ HH ++ R+ +D + W + Y R T
Sbjct: 1 MGIPALWDIIKRYEEVIPIAQLAEDHHRRHGKPLRIAVDEADWRFNNLTPQQVYAIRDAT 60
Query: 50 DKLFLRG----LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
++ +G +F+RL L+ LN LIFV DG ++R + +++ L
Sbjct: 61 NQHAFQGIEKAMFYRLCRLLTLNIQLIFVFDGPD-----RPWKRGKRGQGRINYEERRL- 114
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ L LGVP E EAEA+CA + + + D +S DSD
Sbjct: 115 -------------------LQKLLKYLGVPYHEAPGEAEAECARMQILDIVDAVWSQDSD 155
Query: 166 IFLFGARTVYRDIWLGER---------------GYVVCYEMDDIERKLGFGRNSLITLAL 210
+FG + D + + Y D++ + R L+ A+
Sbjct: 156 CLMFGCTLWFHDHRVAKNEGATDRSKENTKKNGKYASVVRAIDMKERYNLDREGLVLFAM 215
Query: 211 LLGSDY-SQGVRGLGPESACQIVK 233
L+G DY QG+ GP A Q+VK
Sbjct: 216 LVGGDYDQQGLPQCGPGIALQVVK 239
>gi|328865755|gb|EGG14141.1| hypothetical protein DFA_11908 [Dictyostelium fasciculatum]
Length = 1098
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
K+S+ R++ S + ++KE L G+P + EAE+QCA L DG + DSD
Sbjct: 771 KISNQIRSVHSITNDILKECHELLSMFGIPFITSPTEAESQCAELYNLGFVDGVVTDDSD 830
Query: 166 IFLFGAR---TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
I LF ++ VYR+++ + Y+ +I+R +G R LI+LALLLG DY+ GV G
Sbjct: 831 ILLFASQPDMAVYRNLFQHDPQK---YQPKEIKRLMGLERQDLISLALLLGCDYTPGVHG 887
Query: 223 LGPESACQIV 232
+G +A +I+
Sbjct: 888 IGIVNAMEIL 897
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKLFLRGLFH 59
MGV LWD+++ C + + L LQ+K + ID S WI + K R T L G F
Sbjct: 1 MGVPKLWDLVQECGEKVDLESLQDKVLAIDASIWIHTFLSSLKDGRGDITPNAHLVGFFW 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ IFV DGS+P +K T R
Sbjct: 61 RILKLLTFKVRPIFVFDGSVPFLKQKTIDER 91
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 26/206 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDK 102
L GLF+R +++ I+V DG P K RR + +E +
Sbjct: 11 LNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTS 70
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
L K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S
Sbjct: 71 ELKKYAQMSIKLTNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQ 127
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFGA+ + R++ L G+ YV E+D + +KLG R LI + ++
Sbjct: 128 DYDSLLFGAKRLVRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGII 187
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVG 236
+G+DY+ G++G G ++A +I+K G
Sbjct: 188 VGTDYNPDGIKGYGVKTAYRIIKKYG 213
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 14/205 (6%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+ +R+ ++ + IFV DG P K RR E K ++ R+
Sbjct: 58 LSGILYRVSNMVEVGIKPIFVFDGEPPEFKKKEIERRRKIREEAEIKWKTALDIAEARKY 117
Query: 114 MGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+I+ +K L +G+P ++ E EAQ A + + D S D D LFG
Sbjct: 118 AQQAVRVDEYIIESSKKLLNLMGIPIVQAPSEGEAQAAYIVRKGDADYTGSQDYDSLLFG 177
Query: 171 ARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYSQG 219
+ + R++ + G+ Y V E+ D+E +KLG R LI +ALL+G+DY++G
Sbjct: 178 SPRLARNLAITGRRKLPGKNVYTEVKPEVIDLEYNLKKLGITREQLIDIALLVGTDYNEG 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRI 244
V G+G + A + VK+ GD + R+
Sbjct: 238 VEGIGVKKAYKYVKAYGDIFKVLRV 262
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 26/206 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDK 102
L GLF+R +++ I+V DG P K RR + +E +
Sbjct: 11 LNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTS 70
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
L K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S
Sbjct: 71 ELKKYAQMSIRLTNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQ 127
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFGA+ + R++ L G+ YV E+D + +KLG R LI + ++
Sbjct: 128 DYDSLLFGAKRLIRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGII 187
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVG 236
+G+DY+ G++G G ++A +I+K G
Sbjct: 188 VGTDYNPDGIKGYGVKTAYRIIKKYG 213
>gi|47224621|emb|CAG03605.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFS 119
R+ +L + L+FV +G P +K T +R + Q + +S R F
Sbjct: 10 RVSSLTLMGVKLVFVMEGEAPKLKAETMSKRTEARYGGFQKTSSTKSKTSTSRG---RFK 66
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
++KE + LGVP + EAEA CA L+ + L DGC ++D D+FL+GA+TVYR
Sbjct: 67 AVLKECADMLDILGVPWVTAAGEAEAMCAYLDSQGLVDGCITNDGDVFLYGAQTVYRSFN 126
Query: 180 LGERGYVV-CYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
+ + +V CY+ S+G++G+G E A ++++ + +
Sbjct: 127 MNTKDPLVDCYKT-------------------------SRGIQGVGKEQALKLIRMLKEQ 161
Query: 239 VVLQ 242
+LQ
Sbjct: 162 TLLQ 165
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 26/206 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDK 102
L GLF+R +++ I+V DG P K RR + +E +
Sbjct: 11 LNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTS 70
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
L K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S
Sbjct: 71 ELKKYAQMSIRLTNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQ 127
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFGA+ + R++ L G+ YV E+D + +KLG R LI + ++
Sbjct: 128 DYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGII 187
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVG 236
+G+DY+ G++G G ++A +I+K G
Sbjct: 188 VGTDYNPDGIKGYGVKTAYRIIKKYG 213
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR + +G EV +
Sbjct: 61 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAG-EVEE 119
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 120 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 172
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 173 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAV 232
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ GVRG GP++A ++VKS+GD
Sbjct: 233 GILLGTDYNPGGVRGYGPKTALRLVKSLGD 262
>gi|47201249|emb|CAF87424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 175
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP L EAEAQCA L+ G + DSD++LFG R VY++ + + YV ++
Sbjct: 62 FGVPFLIAPMEAEAQCAALDRADQTHGTITDDSDVWLFGGRHVYKN-FFSQNKYVEYFQY 120
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D++ LG R LI LA LLGSDY++GV G+G
Sbjct: 121 SDLQNALGLDRTKLINLAYLLGSDYTEGVAGVG 153
>gi|225560221|gb|EEH08503.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 827
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 120/304 (39%), Gaps = 56/304 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L ++ L + HLQ RV ID+S W+ Q+Q P+
Sbjct: 1 MGIPGLIQSLGPGERISLAKLAIDHLQRTSRPIRVAIDISIWLFQVQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L L +F+ DG + Y+R K +D R
Sbjct: 57 -LRTLFYRLVRLTGLPVHPLFIYDGP----QRPQYKR-----------GKLID-----RN 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
N + +I+ +K L P EAEA+CA L + D S D D +FG++
Sbjct: 96 NRAGDLGRIIRRSKHLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSDDVDAIMFGSK 155
Query: 173 TVYRDI------WLGERGYVVCYEM----DDIERKLGFGRNSLITLALLLGSDY-SQGVR 221
+ +V Y+ D +R + R ++I ALL G DY GV
Sbjct: 156 VTIMNFSKESSSGTNAATHVTLYQTEESGDGRKRNVLLDRGAMILFALLSGGDYLPTGVP 215
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN 281
GP+ A +I+++ N +LQ I K E W E L E++ N
Sbjct: 216 KCGPKLAGEIIQAGFGNELLQAIEGSPAEVA-----VKLEKW-------RERLRNELHEN 263
Query: 282 GTDH 285
G H
Sbjct: 264 GEGH 267
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 24/254 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL----------QNVNKSYR 46
MG+K L L S L L L + + ID S + Q ++ S
Sbjct: 1 MGIKGLIPFLSEKVPSSISELSLECLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSKG 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL-- 104
T ++ GL +R L+ +FV D P +K T +R E D K
Sbjct: 61 ESTSHIY--GLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAIS 118
Query: 105 --DKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
DK S+ ++ +G M AK L +G+P +E +EEAEAQCA L ++LC
Sbjct: 119 EGDKESA-KKLVGRTVKVTKDMNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFV 177
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
S D+D +FG + R++ +V ++ + L F + + +L G DY
Sbjct: 178 ASEDTDTLVFGGWFLLRNVTSSANKKIVKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDT 237
Query: 220 VRGLGPESACQIVK 233
+ G+GP++A +VK
Sbjct: 238 LEGVGPKTAYSLVK 251
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 35/254 (13%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L ++V ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSRGRITSHLSGLFYRNINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDK-----MSSLRRNMG 115
+V DG P K +R + E + + NL++ M + R N G
Sbjct: 71 AGIKPAYVFDGKPPEFKKKEIEKRREAREEAKEKWYEALERGNLEEAKKYAMRATRVNEG 130
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
+I +AK L +G+P ++ E EAQ A + S D D LFGA +
Sbjct: 131 -----LINDAKRLLELMGIPVIQAPSEGEAQAAYMAARKKVYASASQDYDSLLFGAPRLV 185
Query: 176 RDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
R++ + R G V E ++++ ++LG R LI +A+L+G+DY+ G++G+
Sbjct: 186 RNVTITGRRKLPGKNVYVEVRPELIVLEEVLKELGIDREKLIEMAILVGTDYNPGGIKGI 245
Query: 224 GPESACQIVKSVGD 237
GP+ A IVK D
Sbjct: 246 GPKKALTIVKRTKD 259
>gi|398398872|ref|XP_003852893.1| hypothetical protein MYCGRDRAFT_40040, partial [Zymoseptoria
tritici IPO323]
gi|339472775|gb|EGP87869.1| hypothetical protein MYCGRDRAFT_40040 [Zymoseptoria tritici IPO323]
Length = 517
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 21 HLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIP 80
H + R+ ID+S W+ Q+Q P LR ++RL L+ N +FV DG
Sbjct: 24 HDRPFRLAIDISIWLFQIQAGKGGSNPA-----LRTFYYRLLRLLTHNIHPLFVFDGP-- 76
Query: 81 AIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGV 140
T++R G +R EF AK L G P
Sbjct: 77 --NKPTFKRNKKVGG------------PGVRVASVPEFL-----AKQLLKQFGFPWHVAP 117
Query: 141 EEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVVCYEMDDIE 195
EAEA+CALL E + D S D D +FG+ + W E +V Y ++
Sbjct: 118 GEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKS-WTAESSQKTPTHVTVYRAEETT 176
Query: 196 RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ G +I +AL+ G DY +G+ G GP+ AC ++
Sbjct: 177 ARSGLDTQGMILVALMSGGDYIVEGIPGCGPKVACDAARA 216
>gi|256070941|ref|XP_002571800.1| xp-G/rad2 DNA repair endonuclease family [Schistosoma mansoni]
gi|353228641|emb|CCD74812.1| putative xp-G/rad2 DNA repair endonuclease family [Schistosoma
mansoni]
Length = 991
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K L R S + I EA+ L G P + EEAEAQC L L D S DS
Sbjct: 641 EKADRLTRQAQSTTTRCISEAQDLLHLFGFPFVVSPEEAEAQCVALQRHGLVDLVASDDS 700
Query: 165 DIFLFGARTVYRDIW-------LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
D++ FG + V R ++ L Y++D+++RKLG +++ L LL GSDY+
Sbjct: 701 DVWPFGVKLVCRHLFGTGGGDNLKSTTNPSIYKLDEVKRKLGLTIENILRLTLLCGSDYT 760
Query: 218 QGVRGLGPESACQIVK--SVGDN 238
G+ +GP +A +I+ VGD+
Sbjct: 761 HGIDQVGPVTAIEILSEFDVGDD 783
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 15/174 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LW +LE ++ + L L K + ID++ W+ Q +++ + P+ +L F
Sbjct: 1 MGVPGLWRLLEPAREPIELQQLSGKILAIDMNIWLHQAVKSRGAAGGPRN---YLAIFFR 57
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSSLRRNMGSE 117
RL L+ +FV DG PA+K ST RR+L + SE K ++N+
Sbjct: 58 RLCKLLFFGIKPVFVFDGETPALKRSTINSRRQLRNLSEA--------KAEKAQKNLLRR 109
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ E+ LS E E+ L L D + + D +F A
Sbjct: 110 LLRRVAESSVKSLSTSPDKAECFEDTAKHELLRRLRQQSDS-YQAKEDAKMFSA 162
>gi|241958698|ref|XP_002422068.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223645413|emb|CAX40069.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 686
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 36/251 (14%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L+ S K + L L ++ RV ID +I Q + + + +
Sbjct: 1 MGIPELWDLLKPSFGKRISLDELVDQSLKERQRPPRVAIDAYSFIFQADHSSIMID-EKE 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ AL+ LN ++ V DG + KL + + N G + + L +S+
Sbjct: 60 GVLMQNVMAKILALVGLNISVVIVFDGILKPFKL---KSKENEGLVYEDELQRLSLVSNY 116
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
SE + +++ K + + ++ E EAQCA L + D S D D +FG
Sbjct: 117 -----SENNPFVEQLKIELFNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFG 171
Query: 171 ARTVYR-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
AR V R DI YV +MD +E++ G + LI LA L G
Sbjct: 172 ARQVLRNFSRFAEDIGKSPPKTSDITARSSYYVTPVDMDKVEQETGLTTSRLIFLASLRG 231
Query: 214 SDYSQGVRGLG 224
DYS G + +G
Sbjct: 232 GDYSVGAKKMG 242
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDK 102
L GLF+R +++ I+V DG P K RR + +E
Sbjct: 11 LNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAEGNIKTS 70
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
L K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S
Sbjct: 71 ELKKYAQMSIKLSNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQ 127
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFGA+ + R++ L G+ YV E+D + +KLG R LI + ++
Sbjct: 128 DYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGII 187
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVG 236
+G+DY+ G++G G ++A +I+K G
Sbjct: 188 VGTDYNPDGIKGYGVKTAYRIIKKYG 213
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 113/256 (44%), Gaps = 31/256 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ----------LQNVNKSYR 46
MG+K L L S K +PL L + + ID S + Q L + S
Sbjct: 1 MGIKGLIGFLSETAPSSIKEVPLESLSGETIAIDASAALYQFAIAIRDTSYLSTLVNSKG 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEV 97
T + GL +R ++ IFV D + P +KL T +R ++
Sbjct: 61 ESTS--HISGLMNRCVRILEAGIKPIFVFDSTPPDLKLDTLSKRKERREEAEASLEAAKE 118
Query: 98 TQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D + + K+ + E + AK L +G+P +E EEAEAQCA L E +
Sbjct: 119 AGDSETIKKLVGRTVKVSKEQN---NSAKQLLRLMGIPVVEAKEEAEAQCAQLVQEGIAT 175
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
S DSD +FG R + R++ G++ V+ + + + LGF R +L G DY
Sbjct: 176 AVASEDSDSLVFGCRILLRNL-SGKK--VLRIDQEKVLSLLGFTRAQFTDFCILCGCDYC 232
Query: 218 QGVRGLGPESACQIVK 233
++G+GP++A ++K
Sbjct: 233 GTIKGIGPKNAYSLIK 248
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR + +G EV +
Sbjct: 112 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYRRAVEAG-EVEE 170
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 171 ARKYAMMAARLT-------SDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 223
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 224 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELETLLSKLGITREQLIAV 283
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ GVRG GP++A ++VKS+GD
Sbjct: 284 GILLGTDYNPGGVRGYGPKTALRLVKSLGD 313
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 32/265 (12%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCID----LSCWIVQLQNVNKSYRPQTDKL-- 52
MGV NL D++ K + L L+ K V +D L ++ ++ + S P D
Sbjct: 1 MGV-NLKDLIPPEAKVVLDDLRVLRGKIVVVDGYNALYQFLAAIRGPDGS--PLMDSSGR 57
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L GLF+R L+ ++V DG+ P +K+ RR E + + K
Sbjct: 58 ITSHLSGLFYRTINLVEEGIKPVYVFDGNPPELKIKELERRKALREEAAKKYEEAVKEGD 117
Query: 110 L---RRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L RR M S+ + M++EAK L +G+P ++ E EAQ A + S D
Sbjct: 118 LEAARRYAMMSSKLTSDMVEEAKRLLKVMGIPWVQAPAEGEAQAAFMVRRGDAYASASQD 177
Query: 164 SDIFLFGARTVYRDIWL-GER------GYV----VCYEMDDIERKLGFGRNSLITLALLL 212
D LFG+ + R++ + G+R YV E+ + KLG R LI + +LL
Sbjct: 178 YDSLLFGSPRLVRNLTISGKRKLPRKDAYVEVKPEVIELSKLTEKLGITREQLIDIGILL 237
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ +G G+GP++A ++++ G
Sbjct: 238 GTDYNPEGFEGIGPKTALTLIRTYG 262
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 23/259 (8%)
Query: 2 GVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL------QNVNKSYRPQT-- 49
G+ L L C K L Q K++ ID S + Q N +P T
Sbjct: 29 GIHGLGPFLAKEAPGCLKERSLQDFQGKKLAIDASMAMYQFLIAVRSTGENGVAQPLTSA 88
Query: 50 ---DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQD--- 100
+ L+G F R A++ ++V DG P++K +++ R + G++ Q+
Sbjct: 89 SGEETSHLQGFFWRTIAMVKAGIRPLYVFDGKPPSLKSGEIASRNLRRDEGAKRLQEATE 148
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+ N+++M+ + +E K L LGVP ++ EAEAQCA L L
Sbjct: 149 EGNVEEMNKFAKRTTRVTKQHAEECKRLLRLLGVPTVDAPSEAEAQCAALAKNGLVYASA 208
Query: 161 SSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D G+ + R + + E + V+ Y +D + LG + +L G D+S+
Sbjct: 209 TEDMDALCCGSPILVRRLTMSEARKLPVLEYHLDQVLSSLGLNMTQFVDFCILCGCDFSE 268
Query: 219 GVRGLGPESACQIVKSVGD 237
++G+GP+SA ++ G+
Sbjct: 269 TIKGIGPKSALHGIRKHGN 287
>gi|339259208|ref|XP_003369790.1| putative DNA-repair protein [Trichinella spiralis]
gi|316966016|gb|EFV50652.1| putative DNA-repair protein [Trichinella spiralis]
Length = 859
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP ++ + EAEAQCA L + +G + DSDI+LFG + VYR++++ ++ V ++M
Sbjct: 587 FGVPIVKSLAEAEAQCAWLEQNQISEGTITDDSDIWLFGGQHVYRNLFV-KKKLVQYFDM 645
Query: 192 DDIERK------------LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV 239
+ I+ R I LA+L+G DYSQGV LG +A +I+
Sbjct: 646 NTIKELSSLINCIAHPVFSALNREKFILLAMLVGCDYSQGVENLGVVTALEIIAEFNSAA 705
Query: 240 VLQRIASEGLSFVKRAKNSKKEGWS-FKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
+SF + +++ G S F+ ++ + GT P V D
Sbjct: 706 EQSTPIETLVSFRQWFQSAPLPGESTFRTRLRKLC----CHFPGT-------FPDQCVYD 754
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILP 348
A+ NPK +E +L + + + F W EKTD+++LP
Sbjct: 755 AFLNPKVNHFHAED----FKWNLPDLDAIRRYAEENFNWSKEKTDQHLLP 800
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVN 42
MGVK LW IL++ K + L L K + +DLS W+ Q +VN
Sbjct: 74 MGVKGLWKILDAASKPVTLESLSGKILAVDLSIWLHQAVHVN 115
>gi|330946192|ref|XP_003306714.1| hypothetical protein PTT_19920 [Pyrenophora teres f. teres 0-1]
gi|311315693|gb|EFQ85213.1| hypothetical protein PTT_19920 [Pyrenophora teres f. teres 0-1]
Length = 607
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 149/374 (39%), Gaps = 83/374 (22%)
Query: 1 MGVKNLWDILESCKKTLPL---------HHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK 51
MG+ L ++E C++ +PL H + ++ ID + W NV+ K
Sbjct: 1 MGIPELRPVIEVCEEIIPLAKLAQNCYQQHGRPFKIAIDAADW--HYHNVSPEQERYIKK 58
Query: 52 L------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
+ + +F R+ L+ +N +FV DG +K S+ R + +G+
Sbjct: 59 MEPAAHPVEKAIFFRVCKLLTMNIRPVFVFDGPEDKLKPSSKGRLMKAGARA-------- 110
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+IKEA LGVP ++ EAEA C L L D +S DSD
Sbjct: 111 ---------------IIKEALK---GLGVPHIDAPGEAEADCCKLQTLGLVDAVWSQDSD 152
Query: 166 IFLFGARTVYRDI-----------WLGE------RGYVVCYEMDDIERKLGFGRNSLITL 208
+FG R++ +G+ R VV E IE + R+ +
Sbjct: 153 CLMFGCTVWIRELRTAREPGNNSRHIGDTQKDHKRVRVVRAENLKIE-GVQLERDDFVLF 211
Query: 209 ALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC 267
A+L G D+ +QG+ G GP+ A +K +G N+ G S R + + W
Sbjct: 212 AMLKGGDFDTQGLPGCGPKIA---LKLLGANL--------GRSLCSRKSQQECDIW---- 256
Query: 268 NNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADS----EAVHRVLAQHLFQ 323
+EE L + + D ++ R P ++ Y++PK +S ++ H Q +
Sbjct: 257 --REEVLRKVLERQSIDIAIPRTWPRFDILQKYNDPKTHSEEALRNNALTHSNYDQPPNE 314
Query: 324 HARLHQVCAQFFQW 337
LH C F W
Sbjct: 315 ADLLHTACIYFNFW 328
>gi|336275216|ref|XP_003352361.1| hypothetical protein SMAC_07802 [Sordaria macrospora k-hell]
gi|380088465|emb|CCC13620.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 903
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 143/349 (40%), Gaps = 79/349 (22%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + ++ L HL++ R+ ID+S W Q+ P
Sbjct: 1 MGIKGIYKEIGPGQRISLTALATSHLESTGRPLRLAIDISIWQFQILAARGGSNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ +FV DG + PA K + +R + G+ D +M L
Sbjct: 57 -VRTLFYRLVRLLGHTIQPLFVFDGPNKPAFKRN--KRSYSYGNSHGVADAMAKRMIRL- 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G C + EAEA+CALL E + D S D D +FG
Sbjct: 113 --------------------FGFQCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGC 152
Query: 172 RTVYRDIWLGE-------RGYVVCYEMDDIERKLGFG-----RNSLITLALLLGSDY-SQ 218
R R+ W E +V Y++D ER+ G G R ++ +AL+ G DY +
Sbjct: 153 RRTLRN-WSAEGTRSSKTPTHVSVYDVD--EREGGGGINGLDREGMVLVALMSGGDYLPE 209
Query: 219 GVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI 278
GV G G + AC+ ++ + L ++RA + E W +E L++E+
Sbjct: 210 GVPGCGVKVACEAARAG---------FGKELCGIRRADTAALERW-------KERLSREL 253
Query: 279 NVNGTDHSLQRET--------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
N + R P +V+ Y++P A E V R+ Q
Sbjct: 254 RTNESGFFRTRHKALEIPEGFPSLEVLRYYTHPVVSKA--ETVQRLRRQ 300
>gi|150866877|ref|XP_001386616.2| hypothetical protein PICST_33639 [Scheffersomyces stipitis CBS
6054]
gi|149388133|gb|ABN68587.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 894
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 47/268 (17%)
Query: 1 MGVKNLWDILESC----------KKTLPLHHLQNKRVCIDLSCWIVQ-------LQNVNK 43
MG+ LW++L+ H + R+ ID S +IV ++ +
Sbjct: 1 MGISQLWEVLKPAFSDRITIDKFAANFVSQHGRPPRLAIDASLFIVSSTLNEATVERIGT 60
Query: 44 SYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN 103
Y +T +R ++ L+ALN + V DG K +RR N S++T+
Sbjct: 61 GYGDRT----IRNFMAKILYLVALNISFVVVFDG-----KFKPDKRR-NGTSDLTRQPDY 110
Query: 104 LDKMSSLRRNMGSEFS---CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+++S + ++ ++ K + L + L+ E EAQCA L + D
Sbjct: 111 DEELSFFLQQPSQYYAEGWPQVEAIKRILHDLKIDYLQSPGEGEAQCAFLQKFGIVDHVL 170
Query: 161 SSDSDIFLFGARTV------YRDIWLGERG-----------YVVCYEMDDIERKLGFGRN 203
S+DSD+F+FGA ++ +++ G G +V M ++ G
Sbjct: 171 SNDSDVFVFGATSILKNYSRFQEDLAGSPGKGNAPSPTSKYWVTPISMSRVQNTTGLTLP 230
Query: 204 SLITLALLLGSDYSQGVRGLGPESACQI 231
LI LA L G+DYS G G+G ++AC +
Sbjct: 231 RLILLASLRGNDYSTGGTGMGIKNACSL 258
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 31/265 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ ++ ++ + L L K + +D + Q + +P L
Sbjct: 1 MGVTELGKLIPDNLRRRVSLEQLNGKLIALDAYNALYQF--LASIRQPDGTPLMDSQGRV 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-DKNLD--KM 107
L GL +R L+ ++V DG P +KL +R + +D K ++ K
Sbjct: 59 TSHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKK 118
Query: 108 SSLRRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
S R+ S M+ EAK L S+GVP ++ E EAQ A + + + S D
Sbjct: 119 SEARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDY 178
Query: 165 DIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGF-GRNSLITLALLL 212
D FLFGA + R++ + G YV E++D+ + L R LI LA+LL
Sbjct: 179 DSFLFGAPRLVRNLTISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILL 238
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ +G+ G+GP+ A ++++ G
Sbjct: 239 GTDYNPEGIPGIGPQRALRLIQEYG 263
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F++ LI +++ DG P +K + R+ + ++ Q + +KM
Sbjct: 64 LYGIFYKTINLIEKGIVPVYIFDGLAPELKENILVERRARKEQAERDLEQAETESEKMKH 123
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+R + + ++ A+AL ++GVP + EAE CA LN+ + +G S D D F
Sbjct: 124 AKRTVRAT-KYHVESAQALLSAMGVPYMTAPNEAEGFCAALNIANAVNGVVSEDMDSLAF 182
Query: 170 GARTVYRDIW---LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
G + + R+ + + ++ V+ +D++ ++ G + I + +LLG DY Q +GLGP+
Sbjct: 183 GGKVLLRNFFPALMKKKMAVMEISLDEVLKQTGLDQAEFIDMCILLGCDYCQKPKGLGPK 242
Query: 227 SACQIVK 233
+V+
Sbjct: 243 KVYDLVQ 249
>gi|358379429|gb|EHK17109.1| hypothetical protein TRIVIDRAFT_195114 [Trichoderma virens Gv29-8]
Length = 787
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 142/368 (38%), Gaps = 84/368 (22%)
Query: 1 MGVKNLWDILESCKKTLPL---------HHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK 51
MG+K ++ L K+ + L H + R+ ID++ W Q Q P
Sbjct: 1 MGIKGIYRELGPGKR-ISLSKLASDSFAEHNRPYRLAIDIAIWQFQNQAARGGTNPA--- 56
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ IFV DG ++R SG
Sbjct: 57 --IRTLFYRLVRLLGTPIQPIFVFDGP----NKPKFKRHRRSG----------------- 93
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G F+ AK L G + EAEA+CA L + D S D D +FG
Sbjct: 94 --RGDGFAAA--HAKRLIRLFGFVVHDAPGEAEAECAFLQKNGIVDAVLSEDVDTIMFGC 149
Query: 172 RTVYRDIW-----LGERGYVVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRGLG 224
R+ W G+ +V Y+++D+ LG R ++ +AL+ G DY +GV G G
Sbjct: 150 TRTLRN-WSAEGKAGKPTHVSMYDVEDLNMANLGLDREGMVLVALMSGGDYIPEGVPGCG 208
Query: 225 PESACQIVKSVGDNVVLQRIAS--EGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
P+ AC+ K+ + Q AS EGL W +ESL E+ N
Sbjct: 209 PKVACEAAKAGFGKSLCQLRASDTEGL-----------RQW-------KESLRHELQTNE 250
Query: 283 TDHSLQR--------ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHL-----FQHARLHQ 329
+ + R + P +V+ Y++P E+ V+ Q L Q L +
Sbjct: 251 SKYFRTRHKALVIPEDFPSVEVLRYYTHPVV---SPESTLEVVRQRLNETREIQLDGLRE 307
Query: 330 VCAQFFQW 337
+ F W
Sbjct: 308 FTRETFNW 315
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + D+ K L HL +++ ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADVAPEAIKECELKHLFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G F+R L+ ++V DG P +K +R E ++ N+
Sbjct: 61 TSHLMGTFYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERREEAQKQLQAAEEAGNV 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + +EAK L +G+P ++ EAEAQCA + + D
Sbjct: 121 EDVDKFNRRLVKVTKQHGEEAKQLLTLMGIPFIDAPCEAEAQCAAMVKSGKVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + E+ D + LG R+ I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNVLLRRLTFSEARKMPIQEIQYDKVLNGLGLTRDEFIDLCIMLGCDYTTSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKN 252
>gi|340516246|gb|EGR46495.1| predicted protein [Trichoderma reesei QM6a]
Length = 791
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 101/239 (42%), Gaps = 40/239 (16%)
Query: 20 HHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI 79
H + R+ ID++ W Q Q P +R LF+RL L+ IFV DG
Sbjct: 23 QHNRPYRLAIDIAIWQFQNQAARGGTNPA-----IRTLFYRLVRLLGTPIQPIFVFDGP- 76
Query: 80 PAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEG 139
+ ++R SG G F+ AK L G +
Sbjct: 77 ---RKPKFKRNKRSG-------------------RGDGFAAA--HAKRLIRLFGFVVHDA 112
Query: 140 VEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIER- 196
EAEA+CALL + D S D D +FG R+ W G+ G M D+E
Sbjct: 113 PGEAEAECALLQRNGIVDAVLSEDVDTIMFGCTRTLRN-WSAEGKAGKPTHVSMYDVEEM 171
Query: 197 ---KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS-VGDNVVLQRIA-SEGL 249
LG R ++ +AL+ G DY +GV G GP+ AC+ K+ G ++ R++ +EGL
Sbjct: 172 NMANLGLDREGMVLVALMSGGDYIPEGVPGCGPKVACEAAKAGFGKSLCRLRVSDAEGL 230
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 29/248 (11%)
Query: 16 TLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---------FLRGLFHRLRALIA 66
+L L L K V ID I Q ++ + P + L L GLF+R L+
Sbjct: 13 SLKLPELTGKVVAIDAYNTIYQFLSIIRG--PTGEPLANSKGEITSHLSGLFYRNANLLG 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR--RNMGSEFSC---- 120
N L++V DG +K++ +RR E T+ + + + R G +
Sbjct: 71 DNIKLVYVFDGKANELKMAEIQRRSQLKKEATEKYQLAVEEGRIEDARKYGIRTAVLTDK 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M++E+K L LG+P ++ + EA A L L S D D LFGA+ + R++ +
Sbjct: 131 MVEESKKLLSYLGIPYIQAPSDGEAAAAYLTRRELAFAAASQDYDSILFGAKKLVRNLAI 190
Query: 181 -GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R Y+ +E D + +++G LI + +L+G+D++ G G+GP++A
Sbjct: 191 SGKRKVPNRNVYIDVEPEIFEHDKVLQEIGLTHEQLIDVGILIGTDFNPGGFPGIGPKTA 250
Query: 229 CQIVKSVG 236
+++K G
Sbjct: 251 LKLIKENG 258
>gi|452843959|gb|EME45893.1| hypothetical protein DOTSEDRAFT_22018 [Dothistroma septosporum
NZE10]
Length = 925
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 135/340 (39%), Gaps = 68/340 (20%)
Query: 21 HL--QNK--RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
HL QN+ R+ ID+S W+ Q+ P LR ++RL L++LN +FV D
Sbjct: 25 HLIRQNRPFRLAIDISIWLFQILASKGGSNPA-----LRTFYYRLLRLLSLNIHPLFVFD 79
Query: 77 GSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 136
GS T++R G +R EF AK L G P
Sbjct: 80 GS----NKPTFKRNKKVGG------------PGVRVASVPEFL-----AKQLLKQFGFPW 118
Query: 137 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-----RGYVVCYEM 191
EAEA+CALL E + D S D D +FG+ ++ W E +V Y
Sbjct: 119 HIAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGVTLKN-WSSEGTSKVPTHVNVYRA 177
Query: 192 DDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLS 250
+ + K G R +I +AL+ G DY ++G+ G GP+ AC + A G
Sbjct: 178 QETKEKSGMDREGMILVALMSGGDYITEGIPGCGPKLACDAAR-----------AGFGRD 226
Query: 251 FVKRAKNSKKEG---WSFKCNNKEESLNQEINVNGTDHSLQRET--------PFSQVIDA 299
+ A+N KEG W E L +I N H ++ + P +V+
Sbjct: 227 MCEVARNKDKEGLKAW-------RERLQHQIVTNEAKHFSRKNSKLVIPDDFPNQEVLGY 279
Query: 300 YSNPKCYSADS-EAVHRVLA-QHLFQHARLHQVCAQFFQW 337
Y++P + D E + L A L A F W
Sbjct: 280 YTHPCISTPDKLERLRNSLQWDQPIDFAALRSFAADAFDW 319
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 107/261 (40%), Gaps = 31/261 (11%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF--- 53
MG+ L +L C K +L ++V +D S I Q V Q D+L
Sbjct: 1 MGIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGR---QGDQLLTNE 57
Query: 54 -------LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L+G+F R ++ ++V DG P +K +R ++ +
Sbjct: 58 AGEITSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEALEKAKE 117
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D + ++K S + E + E K L +GVP +E EAEAQCA + L
Sbjct: 118 AGDQEAIEKYSKRSVRVTREHN---DECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSD 215
G + D D FGA V R + V E D R+L + I L +L+G D
Sbjct: 175 GLATEDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELTDDQFIDLCILMGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y +RG+G A Q++K G
Sbjct: 235 YCGTIRGIGAVRALQMIKKHG 255
>gi|336468979|gb|EGO57142.1| hypothetical protein NEUTE1DRAFT_123477 [Neurospora tetrasperma
FGSC 2508]
gi|350288714|gb|EGZ69939.1| hypothetical protein NEUTE2DRAFT_158527 [Neurospora tetrasperma
FGSC 2509]
Length = 1034
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 77/347 (22%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + ++ L HL+ R+ ID+S W Q+ P
Sbjct: 1 MGIKGIYKEIGPGQRISLTALATTHLETTGRPLRLAIDISIWQFQILAARGGSNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ +FV DG + PA K + +R + G+ D +M L
Sbjct: 57 -VRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRN--KRSYSYGNSHGVADAMAKRMIRL- 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G C + EAEA+CALL E + D S D D +FG
Sbjct: 113 --------------------FGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGC 152
Query: 172 RTVYRDIWLGERG-------YVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGV 220
R R+ W E +V Y++D ERK G R ++ +AL+ G DY +GV
Sbjct: 153 RKTLRN-WSAEGARSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGV 209
Query: 221 RGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV 280
G G + AC+ ++ + L ++RA + E W +E L +E+
Sbjct: 210 PGCGVKVACEAARAG---------FGKELCGIRRADEAALERW-------KERLTRELRT 253
Query: 281 NGTDHSLQRET--------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
N + R P +V+ Y++P + SE V R+ Q
Sbjct: 254 NESGFFRTRHKALDIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|260825215|ref|XP_002607562.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
gi|229292910|gb|EEN63572.1| hypothetical protein BRAFLDRAFT_208062 [Branchiostoma floridae]
Length = 162
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA L+ +G + DSD++LFG R VY++ +
Sbjct: 37 MYVESQELLRLFGIPYVQSPTEAEAQCAFLDQSKQTEGTITDDSDVWLFGGRQVYKNFFS 96
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+R V ++ D+ +L R+ LI ALL GSDY++G++G+G A + V
Sbjct: 97 QQRDMEV-FKYKDVVSQLAMDRSRLINFALLTGSDYTEGIQGVGKVLAME---------V 146
Query: 241 LQRIASEGLS 250
LQ EG++
Sbjct: 147 LQEFPGEGIA 156
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 31/261 (11%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF--- 53
MG+ L +L C K +L ++V +D S I Q V Q D+L
Sbjct: 1 MGIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGR---QGDQLLTNE 57
Query: 54 -------LRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQ---- 99
L+G+F R ++ ++V DG P +K L+ R +E +
Sbjct: 58 AGDITSHLQGMFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSERRADANEALEKAKE 117
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D + ++K S + E + ++ K L +GVP +E EAEAQCA + L
Sbjct: 118 AGDAEAVEKYSKRSVRVTKEHN---EDCKRLLRLMGVPVVEAPSEAEAQCAEMAKAGLVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIE--RKLGFGRNSLITLALLLGSD 215
G + D D FGA V R + V E+D ++LG + I + +L+G D
Sbjct: 175 GLATEDMDALTFGAPRVIRHLMAPSSSNVPVQEIDRAVALQELGLDDDQFIDMCILMGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y +RG+G A Q++K G
Sbjct: 235 YCGTIRGIGAVRALQLIKKHG 255
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
KK L L +L ++V ID I Q + K P D L GLF+R L+
Sbjct: 11 KKELELENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E + L++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKKKELEKRAETREEALEKWEIALARGELEEAKKYAQRASKINEI 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++ +
Sbjct: 131 LIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E ++D+ ++L R LI LA+L+G+DY+ G++GLGP+ A
Sbjct: 191 TGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKA 250
Query: 229 CQIVKSVGD 237
+IVK D
Sbjct: 251 LEIVKYSKD 259
>gi|170097587|ref|XP_001880013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645416|gb|EDR09664.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 853
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 136/378 (35%), Gaps = 81/378 (21%)
Query: 1 MGVKNLWDILESCKKTLPL-------------HHLQNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LWDIL T L H ++ R+ ID S W + Y
Sbjct: 1 MGVAGLWDILRPAATTRSLTELSVTEGFEANPHGVRGYRIGIDASIWFFHAE-----YGR 55
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ + LR LF R L+ +FV DG R + G ++ + L
Sbjct: 56 EGENPVLRTLFFRCATLMHSPFLPLFVFDGP--------KRPDVKRGKKINKTSHKL--- 104
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
I K + + G C+ EAEA+ A LN + DG S D D F
Sbjct: 105 --------------IPGMKQIVDAFGFECITAPGEAEAELAYLNHIGVIDGILSDDVDNF 150
Query: 168 LFGARTVYRD----------------IWLGERGYVVCYEMDDIERK--LGFGRNSLITLA 209
LFGA+TV R+ ++ + Y + DI + + R +I +
Sbjct: 151 LFGAKTVIRNPSNSLSGNKSNPSLNSAGKDDKNHTRVYRLADINQNPDVLLTRGGMILIG 210
Query: 210 LLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNN 269
L+ G DY QG GL S C + G L R G + AKN +E +N
Sbjct: 211 LMSGGDYQQG--GL---SRCGTKTAHG----LARCGF-GDTLYTAAKNLSRERLPAFLDN 260
Query: 270 KEESLNQEINVNGTD----------HSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
L E+ N +S+ + P ++ +Y NP + + +
Sbjct: 261 WRNELRHELRTNSRGFIGRKSPTLANSIPEDFPDVDILLSYVNPITSESMGKTPPELRWT 320
Query: 320 HLFQHARLHQVCAQFFQW 337
A+L C +F+W
Sbjct: 321 KEPDLAKLAATCEFYFEW 338
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDK 102
L GLF+R +++ I+V DG P K RR + +E
Sbjct: 11 LNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAEGNIKTS 70
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S
Sbjct: 71 EFKKYAQMSIRLSNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQ 127
Query: 163 DSDIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFGA+ + R++ L G+ YV E+D + +KLG R LI + ++
Sbjct: 128 DYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGII 187
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVG 236
+G+DY+ G++G G ++A +I+K G
Sbjct: 188 VGTDYNPDGIKGYGVKTAYRIIKKYG 213
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 103/201 (51%), Gaps = 24/201 (11%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNL 104
L GLF+R ++I IFV DG P K RR +++ + + +
Sbjct: 40 LNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREI 99
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + +E M++E+K L ++G+P ++ E EA+ A +N L S D
Sbjct: 100 RKYAQAAVRLSNE---MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDY 156
Query: 165 DIFLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLG 213
D LFGA+ + R+I + G+R YV E++ + +KLG R LI +A+L+G
Sbjct: 157 DSLLFGAKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIG 216
Query: 214 SDYS-QGVRGLGPESACQIVK 233
+DY+ GV+G+G ++A +I+K
Sbjct: 217 TDYNPDGVKGIGVKTALRIIK 237
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 40/268 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV I E K+ + L +L K++ ID I Q + P D
Sbjct: 1 MGVDLSPLIEEGLKQDIQLDNLNGKKLSIDAYNAIYQFLTTIRGEDGSPLMDSHGRITSH 60
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQ 99
L GLF+R I +++V DG P +K L Y G+E
Sbjct: 61 LSGLFYRTVNFIEKGLKVVYVFDGKPPELKAKEIEERRRTREEALKMYEEARAQGNEELM 120
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
+ ++ +N M++++K L +GVP +E E EAQ A + + G
Sbjct: 121 --RKFATRAAFLKN------YMVEDSKTLLDLMGVPWVEAPSEGEAQAAYMAARGVTWGS 172
Query: 160 FSSDSDIFLFGARTVYRDIWLGERG-------YV-VCYEMDDIERKLGF---GRNSLITL 208
S D D LFG+ + R++ + R YV + EM + E+ L F R L+ +
Sbjct: 173 VSQDYDSLLFGSPRLVRNLTVSGRRKLPNKDVYVEISPEMIETEKLLKFYEITREQLVDI 232
Query: 209 ALLLGSDYSQGVRGLGPESACQIVKSVG 236
+L+G+D++ G++G+GP++A +++K G
Sbjct: 233 GILVGTDFNIGIKGIGPKTALKLIKKYG 260
>gi|346327520|gb|EGX97116.1| flap structure-specific endonuclease [Cordyceps militaris CM01]
Length = 770
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 137/368 (37%), Gaps = 85/368 (23%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L S ++ L L+ + R+ ID++ W Q Q P
Sbjct: 1 MGIKGIYGELGSGQRVSLSKLAADTLKAEGRPLRLAIDVAIWQFQAQAARGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+RL L+A+ +F+ DG P + +R G V
Sbjct: 57 -IRTLFYRLVRLLAIPVQPVFIFDG--PNKPTTKRNKRSGRGDGVAN------------- 100
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+AK L G+P L+ EAEA+CALL + D S D D +FG
Sbjct: 101 ----------SQAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCT 150
Query: 173 TVYRDIWLGE------RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
R+ W E +V Y+ + G GR ++ +AL+ G DY G+ G G
Sbjct: 151 KTLRN-WSSEGKTSTAPTHVSLYDTAAVANH-GLGRQGMVLVALMSGGDYLPDGIPGCGV 208
Query: 226 ESACQIVKSVGDNVVLQRIASEGLSF--VKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
+ AC+ A G S +K A W L E+ N +
Sbjct: 209 KVACEAAN-----------AGFGTSLCSLKAADTDMISAW-------RAELRHELTTNES 250
Query: 284 DH--------SLQRETPFSQVIDAYSNPKCYSADSEAVH-RVLAQHLFQHAR-----LHQ 329
H + + P +V+ Y++P S H + Q ++QH L +
Sbjct: 251 GHFRTKHKSLHIPDDFPNMEVLRYYTHPVV----SPQSHLEAIRQKVYQHKNVDLESLRE 306
Query: 330 VCAQFFQW 337
+ F W
Sbjct: 307 FARETFDW 314
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 29/251 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRMTSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLDKMSSLRRNMGSEF 118
++V DG P K +R + E + + D + + R +E
Sbjct: 71 AGIKPVYVFDGKPPEFKKKELEKRREAREEAEVKWREALARGDIEEARKYAQRATKVNE- 129
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+I++AK L +G+P ++ E EAQ A + ++ S D D LFGA + R++
Sbjct: 130 -MLIEDAKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDVYASASQDYDSLLFGAPRLVRNL 188
Query: 179 WL-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 226
+ G+R G V E ++D+ +L R LI LA+L+G+DY+ G++G+GP+
Sbjct: 189 TITGKRKMPGKDVYVEVKPELIILEDVLNQLKITREKLIELAILVGTDYNPGGIKGIGPK 248
Query: 227 SACQIVKSVGD 237
A +IVK D
Sbjct: 249 KALEIVKYSKD 259
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLD 105
+ GL +R + +FV D P +K T +R E +++ DK
Sbjct: 66 IYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTLEKRRQQREEANASLKKAISEGDK--- 122
Query: 106 KMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
S+++ +G M + AK L +GVP +E +EEAEAQCA L ++LC S
Sbjct: 123 --ESVKKLVGRTVKVSKEMNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASE 180
Query: 163 DSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D+D +FG + R++ ++ ++ + L F + I +L G DY + G
Sbjct: 181 DTDTLVFGGAFLLRNVASSSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEG 240
Query: 223 LGPESACQIVK 233
+GP++A +VK
Sbjct: 241 VGPKTAYSLVK 251
>gi|18376035|emb|CAD21041.1| related to DNA repair endonuclease rad2 [Neurospora crassa]
Length = 1037
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 77/347 (22%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + ++ L HL+ R+ ID+S W Q+ P
Sbjct: 1 MGIKGIYKEIGPGQRISLTALATTHLETTGRPLRLAIDISIWQFQILAARGGSNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ +FV DG + PA K + +R + G+ D +M L
Sbjct: 57 -VRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRN--KRSYSYGNSHGVADAMAKRMIRL- 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G C + EAEA+CALL E + D S D D +FG
Sbjct: 113 --------------------FGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGC 152
Query: 172 RTVYRDIWLGE-------RGYVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGV 220
R R+ W E +V Y++D ERK G R ++ +AL+ G DY +GV
Sbjct: 153 RKTLRN-WSAEGTRSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGV 209
Query: 221 RGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV 280
G G + AC+ ++ + L ++RA + E W +E L +E+
Sbjct: 210 PGCGVKVACEAARAG---------FGKELCGIRRADEAALERW-------KERLTRELRT 253
Query: 281 NGTDHSLQRET--------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
N + R P +V+ Y++P + SE V R+ Q
Sbjct: 254 NESGFFRTRHKALDIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|390361636|ref|XP_793916.3| PREDICTED: flap endonuclease GEN homolog 1-like [Strongylocentrotus
purpuratus]
Length = 234
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
+ DGC + D D FL+GAR VYR++ + G V CY MDDIE KL R L+ LA+LLG
Sbjct: 123 IVDGCMTEDGDAFLYGARIVYRNLNMAT-GKVDCYRMDDIETKLDLDRRRLVALAILLGC 181
Query: 215 DY-SQGVRGLGPESACQIVKSVGDNV 239
DY +GV G+G E A + +KS+ +V
Sbjct: 182 DYLPKGVPGVGKEVAMRFMKSLPSSV 207
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVN-KSYRPQTDKLFLRGLFH 59
MGV+NLW IL K + L+ K++ +DL+ W+V+ Q K + + K LR LF
Sbjct: 1 MGVQNLWQILAPVKSEESIESLKGKKIAVDLAIWLVESQVTGMKMMQGRVSKPHLRNLFF 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R + L L+FV DG+ P +K RR
Sbjct: 61 RTSIFLRLGVKLVFVIDGTPPELKWEEIARR 91
>gi|164427499|ref|XP_956127.2| hypothetical protein NCU03564 [Neurospora crassa OR74A]
gi|157071768|gb|EAA26891.2| predicted protein [Neurospora crassa OR74A]
Length = 713
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 77/347 (22%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + ++ L HL+ R+ ID+S W Q+ P
Sbjct: 1 MGIKGIYKEIGPGQRISLTALATTHLETTGRPLRLAIDISIWQFQILAARGGSNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+ +FV DG + PA K + +R + G+ D +M L
Sbjct: 57 -VRTLFYRLVRLLGHAIQPLFVFDGPNKPAFKRN--KRSYSYGNSHGVADAMAKRMIRL- 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
G C + EAEA+CALL E + D S D D +FG
Sbjct: 113 --------------------FGFMCHDAPGEAEAECALLQREGVVDAVLSEDVDTIMFGC 152
Query: 172 RTVYRDIWLGE-------RGYVVCYEMDDIERKLGFG---RNSLITLALLLGSDY-SQGV 220
R R+ W E +V Y++D ERK G R ++ +AL+ G DY +GV
Sbjct: 153 RKTLRN-WSAEGTRSSKTPTHVSVYDVD--ERKGGINGLDREGMVLVALMSGGDYLPEGV 209
Query: 221 RGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINV 280
G G + AC+ ++ + L ++RA + E W +E L +E+
Sbjct: 210 PGCGVKVACEAARAG---------FGKELCGIRRADEAALERW-------KERLTRELRT 253
Query: 281 NGTDHSLQRET--------PFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
N + R P +V+ Y++P + SE V R+ Q
Sbjct: 254 NESGFFRTRHKALDIPEGFPSLEVLRYYTHPVV--SKSETVQRLKRQ 298
>gi|310796699|gb|EFQ32160.1| hypothetical protein GLRG_07304 [Glomerella graminicola M1.001]
Length = 869
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 42/219 (19%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKL 84
R+ ID++ W Q Q P +R LF+RL L++L IFV DG PA K
Sbjct: 68 RIAIDIAIWQFQTQAARGGTNPA-----IRTLFYRLLRLLSLGIQPIFVFDGPHKPAFKR 122
Query: 85 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 144
+ +R G V + M K L G P + EAE
Sbjct: 123 N---KRSGRGDGVA--------------------TAMAKRVIRL---FGFPLHDAPGEAE 156
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL--GERG-----YVVCYEMDD-IER 196
A+CALL + D S D D +FG R+ W G RG +V Y++D+ +
Sbjct: 157 AECALLQQRGIVDAVLSEDVDTIMFGCTRTLRN-WTAEGTRGAKTPTHVSLYDVDELLSA 215
Query: 197 KLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R ++ +AL+ G DY +GV G G + AC+ K+
Sbjct: 216 GTGLDREGMVLVALMSGGDYIPEGVPGCGVKLACEAAKA 254
>gi|238879957|gb|EEQ43595.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 684
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L+ S K + L L ++ RV ID +I Q + + + D
Sbjct: 1 MGIPELWDLLKPSFGKRISLDELVDQSIKERQRPPRVAIDAYSFIFQADHSSIIVE-EKD 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
+ ++ + ++ AL+ LN +I V DG + +KL + + N G + + L +S+
Sbjct: 60 GVLMQNVMAKILALVGLNISVIVVFDGILKPLKL---KSKENEGLIYEDELQRLALISNY 116
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
SE + +++ K + + ++ E EAQCA L + D S D D +FG
Sbjct: 117 -----SENNPFVEQLKIELSNNKIEYVQAPGEGEAQCAYLQKLGIVDYVISQDVDALVFG 171
Query: 171 ARTVYR-----------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG 213
AR V R DI YV +M+ +E++ G + L+ LA L G
Sbjct: 172 ARRVLRNFSRFAEDIGKSPPKSSDITARSSYYVTPVDMNKVEQETGLTTSRLVFLASLRG 231
Query: 214 SDYSQGVRGLG 224
DYS G + +G
Sbjct: 232 GDYSVGAKKMG 242
>gi|378727189|gb|EHY53648.1| DNA excision repair protein ERCC-5 [Exophiala dermatitidis
NIH/UT8656]
Length = 768
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 123/313 (39%), Gaps = 66/313 (21%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + HL+ R+ ID + W Q Q P LR LF+RL L+AL +
Sbjct: 21 LAIEHLEQSKRPLRLAIDAAIWNFQTQAGQGGKNPA-----LRTLFYRLVKLLALPIDPV 75
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKE-AKALGLS 131
FV DG +T+ K + K + C+ E +K L +
Sbjct: 76 FVYDGK---------------NKPLTKRGKTVSKYGT----------CISNEMSKRLVQA 110
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG------- 184
P EAEA+CA+L L D S D D +FG+ RD W E
Sbjct: 111 FRFPSHTAPGEAEAECAMLQKHGLVDAVMSQDVDAIMFGSSLTLRD-WSKEASKHNKSPT 169
Query: 185 YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKSVGDNVVLQR 243
+V ++ I+ G + +I +ALL G DY + GV G+G AC+I +
Sbjct: 170 HVNVLDLARIKSLSGLDPDGMILVALLSGGDYDEAGVPGIGSTLACEIAR---------- 219
Query: 244 IASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET-------PFSQV 296
A G V+ A+ + ++G E L E+ N + + +R+ P ++
Sbjct: 220 -AGFGADLVELARKNDEDG----LREWRERLEFELETNESGYFRRRKNVKLPENFPDRRI 274
Query: 297 IDAYSNPKCYSAD 309
+ Y NP D
Sbjct: 275 LGYYINPAVTPED 287
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 108/257 (42%), Gaps = 30/257 (11%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQN-----------VNKSY 45
MG+K L L + L L + + +D S + Q VN S
Sbjct: 1 MGIKGLIPFLNEKVPGSMTEMSLESLSGESIAVDASTALYQFTIAIRDSSYFSSLVNASG 60
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGL--IFVSDGSIPAIKLSTY----RRRLNSGSEVTQ 99
+ L G+ R L L CG+ +FV D P +KL T +RR + + + Q
Sbjct: 61 ESTSH---LYGMMSRCSKL--LECGIKPVFVFDSKPPELKLKTLEKRRQRREEASTSLKQ 115
Query: 100 DDKNLDKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
DK S+++ MG M AK L +GVP +E EEAEAQCA L SLC
Sbjct: 116 AIAEGDK-ESIKKLMGRTVKVTKEMNDSAKKLLRLMGVPVIEAPEEAEAQCAYLVRNSLC 174
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D+D FG + R++ +V ++ + L + +L G DY
Sbjct: 175 RFVASEDTDTLAFGGGYLLRNVTASSNKKIVKVDLQKALKGLDLTFEQFVDFCILCGCDY 234
Query: 217 SQGVRGLGPESACQIVK 233
+ G+GP++A +VK
Sbjct: 235 CDTLEGVGPKTAYTLVK 251
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + D+ K L H +++ ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADVAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G F+R ++ ++V DG P +K +R E ++D N+
Sbjct: 61 TSHLMGTFYRTIRMVEQGIKPVYVFDGKPPNLKSGELTKRAERRDEAQKLLQAAEEDGNV 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + EAK L +G+P ++ EAEAQCA L + D
Sbjct: 121 EAIDKFNRRLVKVTKTHADEAKELLQLMGIPYVDAPCEAEAQCAALVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + E+ D + L N I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLAGLELNHNEFIDLCIMLGCDYTNSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKN 252
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E K NL++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+ A
Sbjct: 191 TGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IV+ D
Sbjct: 251 LEIVRYSRD 259
>gi|119186891|ref|XP_001244052.1| hypothetical protein CIMG_03493 [Coccidioides immitis RS]
Length = 813
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + H Q R+ ID+S W+ Q Q P+ LR LF+RL LI+L I
Sbjct: 70 LAIDHFQQTSRPLRIAIDVSIWLFQAQAAQGGLNPE-----LRALFYRLARLISLPVHPI 124
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 132
FV DGS Y+R G V ++ G + I+ +K L
Sbjct: 125 FVFDGS----GRPEYKR----GKLVIRN--------------GRAGAWNIRSSKRLIELF 162
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVV 187
G + EAEA+CA L + D S+D D +FG++ + + +G +V
Sbjct: 163 GFHHHDAPGEAEAECAKLQTMGIVDAAMSNDIDTVMFGSKITFMNFSRASKGPSAATHVS 222
Query: 188 CYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
Y D + F ++ ALL G DY GV GP+ A +I ++
Sbjct: 223 VYRRDGSATNVPFDVGGMVLFALLSGGDYLPAGVPRCGPKLAAEIARA 270
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 15/196 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVT--QDDKNLDKMSS 109
L G+F R+ + N +F+ DG+ P K T RR + +E Q + D +S+
Sbjct: 59 LSGIFFRITTFLENNIKPVFIFDGAPPEFKSETLEQRRERKAVAETAYRQAVEVGDTVSA 118
Query: 110 LR--RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R R +I K L +G+PC++ + E EAQ A + + S D D
Sbjct: 119 FRHARAATRVDETIIAGTKELLGYMGIPCIDAMSEGEAQAAYMAMNGDVRYSISQDYDSL 178
Query: 168 LFGARTVYRDIWLGE----RGYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R++ + RG V+ + D+ G R LI + +L+G+D++
Sbjct: 179 LFGAPRLVRNLTVSRKRKVRGRVITVNPEEILLSDLLDGKGITREELIEIGILVGTDFNS 238
Query: 219 GVRGLGPESACQIVKS 234
GV+G+G ++A +IVKS
Sbjct: 239 GVKGVGAKTALKIVKS 254
>gi|255938165|ref|XP_002559853.1| Pc13g14460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584473|emb|CAP92515.1| Pc13g14460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 873
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 178/451 (39%), Gaps = 85/451 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINAIGPGERISLAKLAVTHLERTARPIRIAVDISIWLFQVQAGRGGRNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF+RL L+AL +FV DG PA K G V+
Sbjct: 57 -LRTLFYRLLKLLALPVHPLFVYDGRQKPAFK---------RGKAVSA------------ 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ G+ + +IK +K L P E EAEA+CA L + D S+D D +FG+
Sbjct: 95 RSYGN--APIIKRSKDLIERFRFPWHEAPGEAEAECARLQQAGIVDAVMSNDVDALMFGS 152
Query: 172 RTVYRDI------WLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDY-SQGVRG 222
+ +V CY M D + R +I A+L G DY GV
Sbjct: 153 SLTIMNFSKESGSGSSSATHVTCYAMGQDGHPSNVPLDRPGMILFAMLSGGDYLPSGVPK 212
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
G + A +I K+ +LQ +AS+ N E L E+ N
Sbjct: 213 CGSKLAAEIAKAGFGEDLLQELASQA-------------DVDTGLNEWRERLQYELEENE 259
Query: 283 TDHSLQRET--------PFSQVIDAYSNPKCYSADSE--AVHRVLAQ---HLFQHARLHQ 329
+ + ++ P Q+++ Y+ PK S+D E ++ LAQ + +
Sbjct: 260 SGYFTRKHPAVRIPDVFPDRQILEYYARPKV-SSDEEMSSLKNRLAQAWDNDIDPLAIRT 318
Query: 330 VCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCP--ITGII 387
A F+W ++ +AE L + LR LGV VP CP + +
Sbjct: 319 FAADHFEWNYRSGARKLIRLLAE-PLVSY-RLRLQRPVLGVSPGFSFVP-DCPPGMQKVY 375
Query: 388 KSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
+SR G + L+ ++PAD++
Sbjct: 376 RSRSSFGTDAMPE-------LQLDMLPADIV 399
>gi|392870771|gb|EAS32604.2| hypothetical protein CIMG_03493 [Coccidioides immitis RS]
Length = 857
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + H Q R+ ID+S W+ Q Q P+ LR LF+RL LI+L I
Sbjct: 89 LAIDHFQQTSRPLRIAIDVSIWLFQAQAAQGGLNPE-----LRALFYRLARLISLPVHPI 143
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 132
FV DGS Y+R G V ++ G + I+ +K L
Sbjct: 144 FVFDGS----GRPEYKR----GKLVIRN--------------GRAGAWNIRSSKRLIELF 181
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVV 187
G + EAEA+CA L + D S+D D +FG++ + + +G +V
Sbjct: 182 GFHHHDAPGEAEAECAKLQTMGIVDAAMSNDIDTVMFGSKITFMNFSRASKGPSAATHVS 241
Query: 188 CYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
Y D + F ++ ALL G DY GV GP+ A +I ++
Sbjct: 242 VYRRDGSATNVPFDVGGMVLFALLSGGDYLPAGVPRCGPKLAAEIARA 289
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 117/263 (44%), Gaps = 30/263 (11%)
Query: 1 MGVKNLWDIL--ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS--YRPQTDKL---- 52
MGVK + DI+ E+ ++T L L K + D + Q + RP D+
Sbjct: 1 MGVK-IGDIIPGEAVEQT-SLKRLSGKAIAFDAYNILYQFLATIRGPDGRPLMDRRGRVT 58
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLD 105
L GLF R + ++V DG P K T +R + E + + +L+
Sbjct: 59 SHLSGLFFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAREEAGKLYEAALAEGDLE 118
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ S M++ A L ++GVP + E EAQ A + + S D D
Sbjct: 119 AARRYAQRAASLEKYMVESAADLLKAMGVPYVMAPSEGEAQAAYMAAKGSVYAAGSQDMD 178
Query: 166 IFLFGARTVYRDIWL-------GERGYV-----VCYEMDDIERKLGFGRNSLITLALLLG 213
LFG+ + R++ + G + YV + Y +D + LG R LI + LL+G
Sbjct: 179 SLLFGSPRLVRNLSIVGRRKLPGRKEYVEVVPEIIY-LDKLLASLGLTREQLIDIGLLVG 237
Query: 214 SDYSQGVRGLGPESACQIVKSVG 236
+DYS VRG+GP++A +IVK G
Sbjct: 238 TDYSPQVRGVGPKTALKIVKEYG 260
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 31/279 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L L K C+ L + Q + +P L
Sbjct: 1 MGVTELGKLIGKEARREIKLESLAGK--CVALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR-------LNSGSEVTQDDKN 103
L GLF+R L+ ++V DG P KL +R L + ++ +
Sbjct: 59 TSHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRR 118
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
D +R + S M+++AK L +G+P ++ E EAQ A + C S D
Sbjct: 119 EDVAKYAKRAIFLT-SEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 164 SDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLG 213
D LFG+ + R++ + + V E+D + + L GR LI LA+LLG
Sbjct: 178 YDSLLFGSPRLVRNLAVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+DY+ +GV G+GP+ A +++ G L + +G+ F
Sbjct: 238 TDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTVLKGVQF 276
>gi|345486309|ref|XP_001603157.2| PREDICTED: exonuclease 1-like [Nasonia vitripennis]
Length = 730
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 26/266 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG+ L LE K + K V ID CW+ + +K Q +++
Sbjct: 1 MGITGLIPFLEKSSKKTNISEFAGKAVAIDTYCWLHKGAFSCADKIVMGQQTDAYVKYCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMSSLR 111
+ L+ N I V DG +PA + +RR +E+ + K + + LR
Sbjct: 61 KFVNMLLGHNIKPILVFDGRHLPAKAETEVKRRESREANRKRAAELIKMGKITEGKNLLR 120
Query: 112 RNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
R++ ++KE +A V C+ EA+AQ A LN+ + D + DSD+ L
Sbjct: 121 RSLDVSHKMALEVMKECQAHN----VDCIVAPYEADAQLAYLNISGIVDVVITEDSDLTL 176
Query: 169 FGARTVYRDIWLGERGYVVCYEMDDIERKLG-----FGRNSLITLALLLGSDYSQGVRGL 223
FG + ++ + GY V E D + +G F + + +L G DY + G+
Sbjct: 177 FGCKKIF--FKMDMYGYGVLVEQDRLHLAMGLRLPDFHMDKFRHMCILSGCDYLASLPGI 234
Query: 224 GPESACQ-IVKSVGDNV--VLQRIAS 246
G AC+ IVK+ DN+ L R+AS
Sbjct: 235 GLNKACKFIVKNTDDNIYNALLRLAS 260
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAE+QCA +N C S DSD +FGA+ + ++ + ++ + + Y++
Sbjct: 599 FGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY-NDKVFEL-YKL 656
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
D I R+LG GR L +A++ G DY+ GV+G+G +A +++K+
Sbjct: 657 DRIRRELGIGRKQLALIAIICGCDYTNGVKGIGIVNALEVIKA 699
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 28/272 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L K T+ + L NK V ID + Q ++ + P D
Sbjct: 1 MGT-DIGDLL--LKDTIEIAGLSNKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT---QDDK--NLDKMS 108
L G+ +RL +LI IFV DG P K T +R T +D K L++ +
Sbjct: 58 LSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEA 117
Query: 109 SLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S+ + MI ++ L +G+P ++ E EAQ + + + D S D D F
Sbjct: 118 YKYAQASSKVTREMIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDADYIGSQDYDSF 177
Query: 168 LFGARTVYRDIWL-GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA V R++ + G+R YV + D +LG R LI +A+ +G+DY
Sbjct: 178 LFGAPQVVRNLTITGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQLIDIAMCVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQRIASE 247
+ G+ +GP+ A ++VK GD VVL+ + +
Sbjct: 238 NTGLENIGPKRALKLVKEHGDIKVVLKELGKD 269
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER 183
+ +AL GVP L EAE+QCA +N + C S DSD +FGAR + ++ +
Sbjct: 480 DTQALLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDDSDALVFGARCLLKNFY--ND 537
Query: 184 GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
Y + I ++LG GR L +A++ G DY+ GVRG+G +A +++K+
Sbjct: 538 NVFELYTAERIRKELGIGRKQLALIAVICGCDYTNGVRGIGVVNALEVIKA 588
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV LWD+L + + + L K CID S WI+ R D + + F R
Sbjct: 1 MGVHKLWDLLTATALPVRVESLFGKVCCIDASFWIIHCMASESINRHGGDVIAV--FFLR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+ L+ +FV DG P K+ T +R
Sbjct: 59 ICYLLDKGIRPVFVFDGKSPFAKIKTIIKR 88
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 139/306 (45%), Gaps = 33/306 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCID----LSCWIVQLQNVNKSYRPQTDKL 52
MG+KNL+ ++ E+C + ++N ++V ID L ++V +++ + ++ +
Sbjct: 1 MGIKNLYQVIKENCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSGGEQLMNESGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN------- 103
L G+F+R ++ ++V DG+ P +K +R SE + ++
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQEAHEDAKEIGTA 120
Query: 104 --LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++K S + E + +EA+ L +GVP + EAEAQCA++ S
Sbjct: 121 EEVEKFSRRTVRVTREHN---QEAQRLLKLMGVPYIIAPTEAEAQCAVIARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E+ E +D + L +N I L +LLG DY
Sbjct: 178 EDMDTLTFASPVLLRKLTFSEQRKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
V+G+GP++A ++K ++ L+ + + K K + E W ++ L QE +
Sbjct: 238 VKGIGPKNALALIK---EHKNLEGVVA---MIEKTGKYTLPEDWPYQ---DARVLFQEPD 288
Query: 280 VNGTDH 285
V DH
Sbjct: 289 VRQADH 294
>gi|325090233|gb|EGC43543.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 827
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 120/304 (39%), Gaps = 56/304 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L ++ L + HLQ RV ID+S W+ Q+Q P+
Sbjct: 1 MGIPGLIQSLGPGERISLAKLAIDHLQRTSRPIRVAIDISIWLFQVQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L L +F+ DG + Y+R K +D R
Sbjct: 57 -LRTLFYRLVRLTGLPVHPLFIYDGP----QRPQYKR-----------GKLID-----RN 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
N + +I+ +K L P EAEA+CA L + D S D D +FG++
Sbjct: 96 NRAGDLGRIIRRSKHLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSDDVDAIMFGSK 155
Query: 173 TVYRDI------WLGERGYVVCYEMDDI----ERKLGFGRNSLITLALLLGSDY-SQGVR 221
+ +V Y+ ++ +R + R ++I ALL G DY GV
Sbjct: 156 VTIMNFSKESSSGTNAATHVTLYQTEESGNGRKRNVLLDRGAMILFALLSGGDYLPTGVP 215
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN 281
GP+ A +I ++ N +LQ I K E W E L E++ N
Sbjct: 216 KCGPKLAGEITQAGFGNELLQAIEGSPAEVA-----VKLEKW-------RERLRNELHEN 263
Query: 282 GTDH 285
G H
Sbjct: 264 GEGH 267
>gi|365984110|ref|XP_003668888.1| hypothetical protein NDAI_0B06130 [Naumovozyma dairenensis CBS 421]
gi|343767655|emb|CCD23645.1| hypothetical protein NDAI_0B06130 [Naumovozyma dairenensis CBS 421]
Length = 774
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 72/298 (24%)
Query: 1 MGVKNLWDILE--------SCKKTLPLHHLQNKR---VCIDLSCWIVQ-------LQNVN 42
MGV LW+IL+ S ++ + +N R V ID W+ + ++
Sbjct: 1 MGVPQLWEILKPYTEANRISLRQFISNFEKENGRSPKVAIDGYNWLFECGFIVSPTNSIK 60
Query: 43 KSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---SGSEVTQ 99
S + T K L L RL+ L++LN G I V DG++ +++ + N SG++++
Sbjct: 61 YSTQGTTPKAML-NLLVRLKELLSLNVGFILVFDGAMKP----SFKNKFNTSSSGNDMSS 115
Query: 100 DD--------------------KNLDKMSSLRRNMGSEFSC----MIKEAKALGLSLGVP 135
+ K D + + N G S +K K L + +
Sbjct: 116 HNNIDMEMDMDMDQISMEGYLKKWQDHIEYHKINNGCPLSNNNDEFMKNVKQLLKFMNIS 175
Query: 136 CLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR-------DIWL-------- 180
++ E EAQCA L + D +++DSDIF+FG V + DI +
Sbjct: 176 YIDACGEGEAQCAWLQVHGYVDFVWTNDSDIFIFGGTKVIKNYSKFVNDIGMTASPKKVS 235
Query: 181 -----GERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVRGLGPESACQI 231
+ ++ +++++ RK N SL+ ++LLG+DY++GV+GLG A Q+
Sbjct: 236 SPLRKAKEYFITVIDLNEVIRKTNGKINQWSLLFFSVLLGADYNKGVKGLGKTKALQL 293
>gi|367034598|ref|XP_003666581.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
gi|347013854|gb|AEO61336.1| hypothetical protein MYCTH_2311387 [Myceliophthora thermophila ATCC
42464]
Length = 894
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 107/254 (42%), Gaps = 53/254 (20%)
Query: 1 MGVKNLW------DILESCKKTLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+K ++ D + CK L + L+ R+ ID S W Q+Q P
Sbjct: 1 MGIKGIYKEIGPGDRISLCK--LAIDTLEQTGRPLRLAIDFSIWQFQVQAARGGANPA-- 56
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
+R LF+RL L+ L IFV DG + PA K +
Sbjct: 57 ---IRTLFYRLTRLLGLAIRPIFVFDGPNKPAFKRN------------------------ 89
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+R+ G S I AK L G E EAEA+CA+L + + D S D D +F
Sbjct: 90 -KRSSGRGDSVSIAMAKRLIRLFGFTIHEAPGEAEAECAMLQQKGIVDAVLSEDVDTIMF 148
Query: 170 GARTVYRDIWL--GERG-----YVVCYEMDDIER-KLGFGRNSLITLALLLGSDY-SQGV 220
G R R+ W G +G +V ++ D I R ++ +AL+ G DY +GV
Sbjct: 149 GCRKTLRN-WSAEGSKGSKTPTHVSMFDADAIAAGPTKLDREGMVLVALMSGGDYLPEGV 207
Query: 221 RGLGPESACQIVKS 234
G G + AC+ ++
Sbjct: 208 PGCGVKVACEAARA 221
>gi|384250267|gb|EIE23747.1| hypothetical protein COCSUDRAFT_47423 [Coccomyxa subellipsoidea
C-169]
Length = 959
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 109/259 (42%), Gaps = 35/259 (13%)
Query: 1 MGVKNLWDILES--------CKKTLPL------HHLQNKRVCIDLSCWIVQ--LQNVNKS 44
MGV +LW++L S C+ L L+ K V +D+S W Q +Q
Sbjct: 1 MGVSDLWNLLRSEGMVREWNCETDGQLVQKAVAAKLEGKVVAVDVSLWTCQALMQGALVE 60
Query: 45 YRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
P+ + ++ F R+ + C + V DG P KL T + R S
Sbjct: 61 VFPEEEARVVKVAFDRIINYLRFGCTPVGVLDGDAPEQKLETLQARFFS---------RF 111
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++ N S F + L ++G+ ++ EAEA CA L+ D C + DS
Sbjct: 112 NRAGGGGGN--SHFVHLCSLTAQLFKAMGLWVVQAPGEAEAVCAALDRAGHVDACVTKDS 169
Query: 165 DIFLFGARTVYRDIWLGERGYVVC----YEMDDIERKLGF---GRNSLITLALLLGSDYS 217
D LFGA+T+++ I C M D+ LG G +L +ALL G DY
Sbjct: 170 DALLFGAQTLFQTIKPVTSTPNECKLSSVAMRDVRAYLGINEGGELALTAIALLTGGDYH 229
Query: 218 Q-GVRGLGPESACQIVKSV 235
G G+G + A +VK +
Sbjct: 230 MGGAEGVGQKQALAVVKHL 248
>gi|322707737|gb|EFY99315.1| putative DNA repair endonuclease rad2 [Metarhizium anisopliae ARSEF
23]
Length = 480
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 126/298 (42%), Gaps = 52/298 (17%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
LR LF+RL L+ IFV DGS I ++R SG R
Sbjct: 12 LRTLFYRLVRLLGTPIQPIFVFDGSNKPI----FKRNKRSG-----------------RG 50
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
G+ + AK L G P + E EA+CALL + D S D D +FG
Sbjct: 51 DGATTAA----AKHLIRLFGFPIHDAPGEGEAECALLQRHGIVDAVLSEDVDTIMFGCTK 106
Query: 174 VYRDIWLGER------GYVVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
R+ W E +V Y+++D+ LG R ++ +AL+ G DY GV G G
Sbjct: 107 TLRN-WSSEGKTSTAPTHVSLYDVEDMALGDLGLDREGMVLVALMSGGDYLPDGVPGCGV 165
Query: 226 ESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEG-WSFKCNNKEESLNQEINVNGTD 284
+ AC+ K A G S V R K S K+G +++ + + E E T
Sbjct: 166 KVACEAAK-----------AGFGKS-VCRLKVSDKDGIQAWRNSLRHELQTNEKGYFRTK 213
Query: 285 H---SLQRETPFSQVIDAYSNPKCYSADS-EAVHRVLAQ-HLFQHARLHQVCAQFFQW 337
H ++ + P +V+ Y++P S S EA+ + + Q H+F L + + F W
Sbjct: 214 HKALTIPEDFPNIEVLRYYTHPIVSSESSIEAIRQTMEQKHVFHLTALREFTRENFDW 271
>gi|440632113|gb|ELR02032.1| hypothetical protein GMDG_05194 [Geomyces destructans 20631-21]
Length = 842
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 90/217 (41%), Gaps = 36/217 (16%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ +D+S W ++Q P LR LF+RL L + IFV DG
Sbjct: 34 RIAVDISIWNFEVQGGKGGPNPA-----LRTLFYRLVRLAGTSVQAIFVFDGP------- 81
Query: 86 TYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
D+ L K + RR GS + ++ K L G + EAEA
Sbjct: 82 ---------------DRPLLKRNKTRRKGGSAYLADVRRTKLLLQLFGFESHDAPGEAEA 126
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG------YVVCYEMD-DIERKL 198
+CALL L D S D D +FG+ RD W E +V Y+ E K
Sbjct: 127 ECALLQQRGLVDAVLSEDVDTLMFGSGITIRD-WSCEGSGKTPPTHVSLYDAKVTKEGKS 185
Query: 199 GFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
G R +I +AL+ G DY + GV G + AC+ ++
Sbjct: 186 GLDREGMILVALMSGGDYDTAGVARCGAKIACEAARA 222
>gi|303317440|ref|XP_003068722.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240108403|gb|EER26577.1| XPG family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 789
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 41/248 (16%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L + L + H Q R+ ID+S W+ Q Q P+
Sbjct: 1 MGIPGLLQELGPGDRVSLAKLAIDHFQQTSRPLRIAIDVSIWLFQAQAAQGGLNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL LI+L IFV DGS Y+R G V ++
Sbjct: 57 -LRALFYRLARLISLPVHPIFVFDGS----GRPEYKR----GKLVIRN------------ 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
G + I+ +K L G + EAEA+CA L + D S+D D +FG++
Sbjct: 96 --GRSGAWNIRSSKRLIELFGFQHHDAPGEAEAECAKLQTMGIVDAAMSNDIDTVMFGSK 153
Query: 173 TVYRDIWLGERG-----YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPE 226
+ + +G +V Y D + F + ALL G DY GV GP+
Sbjct: 154 ITFMNFSRASKGPSAATHVSVYRRDGSAANVPFDAGGMALFALLSGGDYLPAGVPRCGPK 213
Query: 227 SACQIVKS 234
A +I ++
Sbjct: 214 LAAEIARA 221
>gi|169606572|ref|XP_001796706.1| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
gi|160707030|gb|EAT86160.2| hypothetical protein SNOG_06329 [Phaeosphaeria nodorum SN15]
Length = 739
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
LR ++RL LIAL+ +FV DG ++R +G V + L
Sbjct: 10 LRTFYYRLLRLIALSIHPVFVFDGP----NKPPFKRNKRTGPNVASIPEFL--------- 56
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
AK L G P EAEA+CALL E + D S D D +FG+
Sbjct: 57 -----------AKQLLKQFGYPIHLAPGEAEAECALLQREGIVDAVLSEDVDTLMFGSGI 105
Query: 174 VYRDIWLGERG-------YVVCYEMDDIERK---LGFGRNSLITLALLLGSDY-SQGVRG 222
R+ W E+G +V Y D +E K G R+ +I +AL+ G DY +G+ G
Sbjct: 106 TIRN-WSPEKGSSGKTPTHVNVY--DAVETKSGPSGLDRDGMILVALMSGGDYVPEGIPG 162
Query: 223 LGPESACQIVKS 234
GP++AC+ K+
Sbjct: 163 CGPKTACEAAKA 174
>gi|444323741|ref|XP_004182511.1| hypothetical protein TBLA_0I03380 [Tetrapisispora blattae CBS 6284]
gi|387515558|emb|CCH62992.1| hypothetical protein TBLA_0I03380 [Tetrapisispora blattae CBS 6284]
Length = 865
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 41/256 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL-----DKMS 108
+ +RL+ L++LN ++FV DG++ + Y+ + + D + D +
Sbjct: 80 MTNFVYRLKELLSLNIEMVFVFDGNLKPWFKNKYKSEKDYNILANEKDNDYLELYNDHLK 139
Query: 109 S-------LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
S L N +K K L L +P L+ E EAQCA LN+ +
Sbjct: 140 SHQTKNQCLALNDSFHEPSFLKSVKKLLDHLNIPYLQACGEGEAQCAWLNINRYVHYVLA 199
Query: 162 SDSDIFLFGARTVYRDI--WLGERG------------------YVVCYEMDDIERK--LG 199
+DSD +FG + + R+ + ++G +V MD+++++
Sbjct: 200 NDSDTLMFGCKNMLRNFSKFWDDKGATAGSGSSPEKHRDNKEYFVTVINMDEVQKQSIHR 259
Query: 200 FGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNV------VLQRIASEGLSFVK 253
R SL+ ++LLG+DY+ GV+GLG A ++ S + + + I E ++
Sbjct: 260 IDRWSLLFFSVLLGADYNDGVKGLGKVKAAKLSYSTAPDFSLKFRKIFENIDQEKKRRIE 319
Query: 254 RAKNSKKEGWSFKCNN 269
+ + KKE + + C N
Sbjct: 320 KYDSFKKEVFEY-CKN 334
>gi|452985668|gb|EME85424.1| hypothetical protein MYCFIDRAFT_206519 [Pseudocercospora fijiensis
CIRAD86]
Length = 967
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 108/254 (42%), Gaps = 45/254 (17%)
Query: 1 MGVKNLWDILESCKKT---------LPLHHLQNKRVCIDLSCWIVQLQNVN-------KS 44
MG+ LW +L + T HH + R+ +D +CW + +N+N ++
Sbjct: 1 MGINGLWQVLGHGEVTELADYAAAHFKKHH-RPLRIAVDEACW--RFRNLNDEQVANIRN 57
Query: 45 YRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
P + + L+ LRA LN L+FV DG K +R G + K+L
Sbjct: 58 GEPAANPMEKTILWRILRAH-KLNIQLLFVWDGMSKPWKERQGKRGPGGGKVDNETVKSL 116
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
KM + L VP EAEA+CA L + D +S D
Sbjct: 117 HKMFDV---------------------LHVPYHRAPGEAEAECAKLQRLGVVDAVWSDDC 155
Query: 165 DIFLFGARTV---YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGV 220
D F+FG T+ +R G G V YE I L +SL+ A+L G DY+ G+
Sbjct: 156 DSFMFGCTTLIKQHRKPGNGCLGQVSIYEASTILPNLDLDADSLVLFAVLAGGDYNLTGL 215
Query: 221 RGLGPESACQIVKS 234
RG GP SA +I ++
Sbjct: 216 RGCGPMSAKRIAQT 229
>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
Length = 339
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 31/243 (12%)
Query: 21 HLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIALNCGLIF 73
HL+ + V ID I Q + + P D L GL +R L+ L+F
Sbjct: 19 HLRGQIVAIDAYNTIYQFLSSIRQRDGTPLKDSRGRVTSHLSGLLYRTTNLVEAGLKLVF 78
Query: 74 VSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC-------MIKE 124
V DG P K +T RR++ T D + + +++ R + M+ +
Sbjct: 79 VFDGVPPDFKAATIEKRRKIRD----TADREWKEALAAGREDAFKYAQATSRLQPEMVAD 134
Query: 125 AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER- 183
AK+L S+G+P +E E EAQ A + S D D LFGA V R++ +G +
Sbjct: 135 AKSLLTSMGIPVVEAASEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKR 194
Query: 184 -----GYVVCYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
V +++ IE +LG + LI +A+L+G+DY G+ G+G + A Q++
Sbjct: 195 KLPGKNVYVDVKLEIIELQPNLDRLGITQEQLIDIAILVGTDYDPGIHGIGAKKALQLIY 254
Query: 234 SVG 236
G
Sbjct: 255 KHG 257
>gi|393225781|gb|EJD33677.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 579
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 151/377 (40%), Gaps = 80/377 (21%)
Query: 1 MGVKNLWDILESCKKT-----LPLHHLQ-------NKRVCIDLSCWIVQLQNVNKSYRPQ 48
MGVK LW +L+ ++ L +H + RV ID+S W+ ++ V +
Sbjct: 1 MGVKGLWSVLQPAAESKSVAQLAMHAFEANTYGYRGYRVGIDVSVWLGHMK-VFDGTPLR 59
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
++L L+ LF R L+A+ +FV DG +K ++R + T ++
Sbjct: 60 VEQLGLQMLFFRCARLLAMPILPLFVFDG----LKRPAHKR-----GKTTH--YTTPRIE 108
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+N+ S F ++A EAEA A LN L D ++ D D FL
Sbjct: 109 GHAQNIISSFGFEWRKAPG--------------EAEADLAWLNSMGLIDAVWTDDGDAFL 154
Query: 169 FGARTVYRD--------------IWLGER--GYVVCYEMDDI--ERKLGFGRNSLITLAL 210
FGA TV R+ G++ V + +D+ + RN LI +AL
Sbjct: 155 FGATTVMRNPGRNLSSNIRSPALTMEGKQNENQVHVFHAEDLIDNENIRLDRNGLILVAL 214
Query: 211 LLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNK 270
L G DY +G+ G+G A + + A G + ++ E + +
Sbjct: 215 LRGGDYHEGIDGVGMTIAHALAR-----------AGFGDTLAAAMQSPDVETLAGVISQW 263
Query: 271 EESLNQEINVNGTDH----------SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
L QE+ + H S+ + P V +AY+NP + + A++ +
Sbjct: 264 RSELVQELRTDSQGHLGRRHPALAASIPLDFPDLDVYNAYANPVVSNLGTVAINWYRLPN 323
Query: 321 LFQHARLHQVCAQFFQW 337
L L Q C + F+W
Sbjct: 324 L---TGLAQACERHFEW 337
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIDLENLYGKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E K NL++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+ A
Sbjct: 191 TGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IV+ D
Sbjct: 251 LEIVRYSRD 259
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 21/252 (8%)
Query: 1 MGVKNLWDILESCK----KTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-----YRPQTDK 51
MG+K L +L+ K PL + +KR+ ID S I Q +S
Sbjct: 1 MGIKQLSKLLKENSANGIKERPLAYYSSKRIAIDASMSIYQFLIAVRSDGSMLGSGDATT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEVTQ----DDKN 103
L GLF+R ++ L ++V DG+ P IK+ RR + E + DK
Sbjct: 61 SHLVGLFYRTIRMVELGITPVYVFDGAPPEIKMKELGKRNERRAMADKEYREASEAGDKR 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L +M R+ + ++E K L +G+P EAEA CA L + + G + D
Sbjct: 121 LMEMYDKRKTKVT--GVHVEECKRLLGLMGIPFETAPSEAEAYCAFLCRKRIVYGVATED 178
Query: 164 SDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG+ V R+ + + VV Y + + L +N I L +LLG DY ++
Sbjct: 179 MDSLTFGSPVVLRNFSGAQSKKLPVVEYNLRQLLEDLSLEQNEFIDLCILLGCDYCDTLK 238
Query: 222 GLGPESACQIVK 233
G+GP+ A +++
Sbjct: 239 GIGPKKALGLIR 250
>gi|389742999|gb|EIM84184.1| hypothetical protein STEHIDRAFT_82056 [Stereum hirsutum FP-91666
SS1]
Length = 953
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 147/385 (38%), Gaps = 92/385 (23%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQ-------NK------RVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD+L +T L HL NK RV +D S W + + P
Sbjct: 1 MGVPGLWDLLRPAGETYSLTHLAVTEGFEANKSGRRALRVGVDASIWFYHSKWGKEGENP 60
Query: 48 QTDKLFLRGLFHRL-RALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN--L 104
+ LR LF R R L+ +FV DG + R G +++++K+ +
Sbjct: 61 E-----LRTLFFRCCRQLLDKPFLPVFVFDGPL--------RPEEKRGKRISRENKHWMV 107
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D M + + G E+ A G EAEA+ A LN + D +S D
Sbjct: 108 DSMKGMIKAFGFEWRM------APG------------EAEAELAYLNETGVIDAVWSDDV 149
Query: 165 DIFLFGARTVYRDI----------------WLGERGYVVCYEMDDIERK--LGFGRNSLI 206
D FLFGA V R+ L + + Y D I R + R +I
Sbjct: 150 DNFLFGATMVIRNSSKKLSGNKSHSTKNSDGLEDGNHTAVYRSDAISRHPSINLSRGGMI 209
Query: 207 TLALLLGSDYSQ-GVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWS 264
+ALL G DY Q GV G GP + + + +GD ++ S A GW
Sbjct: 210 LIALLSGGDYHQAGVTGCGPGFSHGLARCGLGDQLL-----QAARSMDDNALQDFLVGW- 263
Query: 265 FKCNNKEESLNQEINVNGTDH----------SLQRETPFSQVIDAYSNPKCYSADSEAVH 314
+SL +E+ N + + ++ P ++ +Y+NP S H
Sbjct: 264 ------RQSLREELKTNASGYLPSKRPSLVKAVGNTFPDISILRSYTNPITSKTHSRTQH 317
Query: 315 RVLAQHLFQH--ARLHQVCAQFFQW 337
+ Q + ++ VC F+W
Sbjct: 318 QP-PQWADEPDLGQIGHVCELHFEW 341
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI K L H +++ ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADIAPEAIKERELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTTVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R L+ ++V DG P +K +R E ++D +
Sbjct: 61 TSHLMGIFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDEAQKLLQAAEEDGDA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + +EAK L +G+P ++ EAEAQCA L + D
Sbjct: 121 EAIDKFNRRLVKVTKTHAEEAKQLLKLMGIPYIDAPCEAEAQCAALVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + E+ D + L N I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLGCDYTGSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKN 252
>gi|452983877|gb|EME83635.1| hypothetical protein MYCFIDRAFT_154172 [Pseudocercospora fijiensis
CIRAD86]
Length = 788
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 121/301 (40%), Gaps = 57/301 (18%)
Query: 21 HLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIP 80
H + R+ ID+S W+ Q+Q P LR ++RL L+ LN +FV DG P
Sbjct: 29 HDRPFRLAIDISIWLFQIQAGKGGSNPA-----LRTFYYRLLRLLTLNIHPLFVFDG--P 81
Query: 81 AIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGV 140
L ++R G +R EF AK L P
Sbjct: 82 NKPL--FKRNKKVGG------------PGVRVASVPEFL-----AKQLLKQFAFPWHVAP 122
Query: 141 EEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGER-----GYVVCYEMDDIE 195
EAEA+CALL E + D S D D +FG+ T R+ W E +V Y + +
Sbjct: 123 GEAEAECALLQREGIVDAVLSEDVDTLMFGSGTTLRN-WTAESTNKTPTHVNVYRAAETK 181
Query: 196 RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKR 254
K G R +I +AL+ G DY ++G+ G GP C ++ E ++ KR
Sbjct: 182 EKSGLDREGMILVALMSGGDYITEGIPGCGPRVGCDAARA--------GFGRELVNLAKR 233
Query: 255 AKNSKKEGWSFKCNNKEESLNQEINVNGTDH--------SLQRETPFSQVIDAYSNPKCY 306
S + W E L EI N + H + + P +V+ Y++P C
Sbjct: 234 RDMSGLKAW-------RERLQHEIQTNESKHFSRKNNTLKIPDDFPNREVLGYYTDP-CT 285
Query: 307 S 307
S
Sbjct: 286 S 286
>gi|440492480|gb|ELQ75044.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 728
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 50/172 (29%)
Query: 105 DKMSSLRRNMGS-------EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLE---- 153
D+M+SL RN+ + E C+ K + LG+P ++ E+++Q LN E
Sbjct: 492 DRMASLERNIRTRSINLMNELQCITVLMKKMLTILGIPYIDAPYESDSQLGYLNNECELE 551
Query: 154 -----------SLC------------------DGCFSSDSDIFLFGARTVYRDIWLGERG 184
C D + D+D+FLFGA VY+D
Sbjct: 552 RNERKSVFNPEEKCEHLDTNQVFNDKIYNLKVDAIITEDNDVFLFGANRVYKD------- 604
Query: 185 YVVC---YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
Y C Y M +I KL R LI L++ LG+DY+ G RG+GP+ A +I+K
Sbjct: 605 YFKCPKLYTMQNIRDKLNLNREDLIKLSVFLGNDYTVGFRGIGPKKALEILK 656
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 1 MGVKNLWDILESCKKT-LPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGVK LW +LE C P +N+R+ ID S W+ + +NV PQT+ ++
Sbjct: 1 MGVKGLWKLLEECHTADTP----RNQRLAIDASIWLYKYKNV-----PQTNMIY--SFVK 49
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ L FV D PA K+ T +R
Sbjct: 50 RIIMLLYHKNSLFFVFDSKAPAEKIKTIAKR 80
>gi|154276716|ref|XP_001539203.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414276|gb|EDN09641.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 826
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 113/284 (39%), Gaps = 52/284 (18%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + HLQ RV ID+S W+ Q+Q P+ LR LF+RL L L +
Sbjct: 22 LAIDHLQRTSRPIRVAIDISIWLFQVQAGKGGTNPE-----LRTLFYRLVRLTGLPVHPL 76
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 132
F+ DG + Y+R K +D R N + +I+ +K L
Sbjct: 77 FIYDGP----QRPQYKR-----------GKLID-----RNNRVGDLGRIIRRSKHLIDLF 116
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI------WLGERGYV 186
P EAEA+CA L + D S D D +FG++ + +V
Sbjct: 117 HFPHHTAPGEAEAECARLQSSGVVDAVMSDDVDAIMFGSKVTIMNFSKENSSGTNAATHV 176
Query: 187 VCYEM----DDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVL 241
Y+ D +R + R ++I ALL G DY GV GP+ A +I+++ N +L
Sbjct: 177 TLYQTEESGDGRKRNVLLDRGAMILFALLSGGDYLPTGVPKCGPKLAREIIQAGFGNELL 236
Query: 242 QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 285
Q I K E W E L E++ NG H
Sbjct: 237 QAIEGSPAEVA-----VKLEKW-------RERLRNELHENGEGH 268
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 127/264 (48%), Gaps = 33/264 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V ID + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLTNQVVAIDAFNTLHQFLSIIRQRDGNPLVNSRGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---------SGSEVTQDDKNL 104
L GL +R +LI + +F+ DG P +K T RR ++V D +
Sbjct: 58 LSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESSLEKWENAKVEGDLEAA 117
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + E +++++K L +G+P ++ E EAQ A + L+ D S D
Sbjct: 118 YKYAQASSKVDQE---IVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDY 174
Query: 165 DIFLFGARTVYRDIWL-GERGYVVCYEMDDIERK----------LGFGRNSLITLALLLG 213
D FLFGA TV R++ + G+R + D+E + LG R LI +A+ +G
Sbjct: 175 DSFLFGAPTVIRNLAVTGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVG 234
Query: 214 SDYSQGVRGLGPESACQIVKSVGD 237
+D+++G+ +GP++A +++K GD
Sbjct: 235 TDFNKGLEKVGPKTALKLIKKHGD 258
>gi|402466077|gb|EJW01645.1| hypothetical protein EDEG_03812 [Edhazardia aedis USNM 41457]
Length = 856
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
+P +E EA++QCA +L+++ D + D+DIFLFG + +YR+ + + + Y++
Sbjct: 651 FNLPFVEAPLEADSQCAYFSLKNIVDAVITEDNDIFLFGGKKIYRNYFKNGKN-IDLYDI 709
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
++I++ + R+ +I ++L+LGSDY G++G G + + ++K
Sbjct: 710 NEIKKII--SRDEMIMISLILGSDYCDGIKGFGLKKSLDLIK 749
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 142/295 (48%), Gaps = 19/295 (6%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV-----NKSYRPQTDKLF--LRGLFHRLRALIA 66
KK +P+ +L K V ID + Q + R + ++ G+F++ ++
Sbjct: 11 KKEIPIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNRKGEITSTYNGIFYKTIYMLE 70
Query: 67 LNCGLIFVSDGSIPAIKLSTY--RRRL--NSGSEVTQ--DDKNLDKMSSLRRNMGSEFSC 120
+ ++V DG P +K T RR++ + E T+ + +N+D+M + M
Sbjct: 71 NDITPVWVFDGKPPKLKEKTREERRKMREKAKEEFTKAKEMENIDEMQKYAKRMNFLTKD 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++ +K L +GVP + E E Q + + + S D D L+GA + R++
Sbjct: 131 IVENSKKLLDLMGVPYVNAPAEGEGQASYMAKKGDVFCVISQDYDALLYGAPRIVRNL-T 189
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNV 239
+ + E++++ +LG + LI +A+L+G+DY+ +GV+G+GP+ A +IVKS +
Sbjct: 190 ATKEELELIELENVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIVKSKNKEL 249
Query: 240 VLQRIASEGLSFVKRA-KNSK-KEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
L+ A E +K KN K + +S K ++ + V D S++R P
Sbjct: 250 YLK--AVENYEEIKNIFKNPKVTDEYSIKLKKPDKEGIIKFLVEENDFSMERVQP 302
>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
gi|28380012|sp|O29975.1|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
Length = 336
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 36/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MG ++ D+ E ++ + L + K++ +D + Q ++ + +P L
Sbjct: 1 MGA-DIGDLFE--REEVELEYFSGKKIAVDAFNTLYQFISIIR--QPDGTPLKDSQGRIT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ--------DDKN 103
L G+ +R+ ++ + +FV DG P K + R +E + DK+
Sbjct: 56 SHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKD 115
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
K + + G ++ AK L +G+P ++ E EAQ A + + + S D
Sbjct: 116 AKKYA---QAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQD 172
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLL 212
D LFG+ + R++ + G+ YV V E+ +E ++LG R LI +A+L+
Sbjct: 173 YDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILV 232
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++GV+G+G + A +K+ GD
Sbjct: 233 GTDYNEGVKGVGVKKALNYIKTYGD 257
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 27/264 (10%)
Query: 1 MGVKNLWDIL--ESCK--KTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L +++ ES K K + L ++V ID S I Q Q + T +
Sbjct: 1 MGIKALANVISEESPKAIKHTDIKSLFGRKVAIDASMSIYQFLIAVRQRDGEQLMSDTGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------D 100
L G F+R ++ +V DG P +K + + R + T+ D
Sbjct: 61 TTSHLMGFFYRTLRMVDNGIKPCYVFDGKPPDLKSNVLKSRFEKREDATEQGEEAKETGD 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+ +D++S + E + E + L +G+P +E EAEAQCA L
Sbjct: 121 AETIDRLSRRTVRVTKEHNM---ECRKLLRLMGIPVVEAPSEAEAQCAELVRGGKVWAAG 177
Query: 161 SSDSDIFLFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
S D D FGA + R + E+ + Y +++ L GR L +LLG DY +
Sbjct: 178 SEDMDTLTFGAPILLRHLTFSEQKKEPISHYYLEEALTGLEMGREQFTDLCILLGCDYLE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVV 240
V+G+GP +A ++++ G D +V
Sbjct: 238 PVKGVGPSTALKLIREYGSLDEIV 261
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 31/314 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L ++ + + + ++V ID S + Q QN + ++ +
Sbjct: 1 MGIKGLTALISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT------QDDKN 103
L G F+R +I ++V DG+ P +K ++R E +D +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQQEEQKDVAD 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++KM L R +E + L +G+PC+ EAEAQCA L S D
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVR 221
D FG + + + E+ + +++D + G G + I L +LLG DY ++
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLGMDMAQFIDLCILLGCDYLDPIK 240
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKK--EGWSFKCNNKEESLNQEIN 279
G+GP++A ++++ ++ L+++ F + AK S + E W F+ K + + +
Sbjct: 241 GIGPKTALKLIR---EHKTLEKVVEH---FKEEAKKSVQIPEHWPFQEARK---IFENPH 291
Query: 280 VN-GTDHSLQRETP 292
V G D L+ ETP
Sbjct: 292 VQKGKDLDLKWETP 305
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
GVP + EAE+QCA +N C S DSD +FGA+ + ++ + ++ + + Y +
Sbjct: 538 FGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFGAKCLLKNFY-NDKVFEL-YTL 595
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
D I R+LG GR L +A++ G DY+ GV+G+G +A +++K+
Sbjct: 596 DRIRRELGIGRKQLALIAIICGCDYTTGVKGIGIVNALEVIKA 638
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV NLWD+L + L + L K ID S WI + R D + F R
Sbjct: 1 MGVHNLWDLLSATALPLRVESLFGKVCAIDGSFWISHCLASESNMRHGGD--IVAVFFLR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+ L+ +FV DG P K+ T RR
Sbjct: 59 ICYLLDRGIKPVFVFDGCSPFAKMKTLLRR 88
>gi|345563417|gb|EGX46418.1| hypothetical protein AOL_s00109g176 [Arthrobotrys oligospora ATCC
24927]
Length = 610
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 43/256 (16%)
Query: 1 MGVKNLWDILESCKKTLPL---------HHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK 51
MG+K L++ L + K +PL H ++ RV ID+S W Q + V R
Sbjct: 1 MGIKGLYEELGAPDK-VPLAKLSIDHFKRHKRHIRVAIDISIWAFQSKAVQG--RSTGSN 57
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
LR +++RL +L++LN +FV DG P K R + SG E
Sbjct: 58 APLRVIYYRLCSLLSLNIHAVFVFDGKDRPEFK----RGKSISGGE-------------- 99
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
++ ++ L + G P EAEA+CA L + + D S D D +FG
Sbjct: 100 --------GYLLAFSRRLITAFGFPIHNAPGEAEAECAYLQKQGIVDAVLSEDVDTLMFG 151
Query: 171 ARTVYRDIWLGERG---YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPE 226
R +R G+ + Y+ I K G ++ ALL G DY + GV G+G +
Sbjct: 152 CRQSWRSCEKGDSKTLEIMQVYQSRVIRDKTGLTPAGMVLTALLSGGDYNTAGVAGIGMK 211
Query: 227 SACQIVKSVGDNVVLQ 242
A K+ + +LQ
Sbjct: 212 QAVAAAKAGFGDELLQ 227
>gi|240278973|gb|EER42479.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 772
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 44/263 (16%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L ++ L + HLQ RV ID+S W+ Q+Q P+
Sbjct: 1 MGIPGLIQSLGPGERISLAKLAIDHLQRTSRPIRVAIDISIWLFQVQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L L +F+ DG + Y+R K +D R
Sbjct: 57 -LRTLFYRLVRLTGLPVHPLFIYDGP----QRPQYKR-----------GKLID-----RN 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
N + +I+ +K L P EAEA+CA L + D S D D +FG++
Sbjct: 96 NRAGDLGRIIRRSKHLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSDDVDAIMFGSK 155
Query: 173 TVYRDI------WLGERGYVVCYEMDDI----ERKLGFGRNSLITLALLLGSDY-SQGVR 221
+ +V Y+ ++ +R + R ++I ALL G DY GV
Sbjct: 156 VTIMNFSKESSSGTNAATHVTLYQTEESGNGRKRNVLLDRGAMILFALLSGGDYLPTGVP 215
Query: 222 GLGPESACQIVKSVGDNVVLQRI 244
GP+ A +I ++ N +LQ I
Sbjct: 216 KCGPKLAGEITQAGFGNELLQAI 238
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS----- 108
L GLF RL I +F+ DG P K T R + + K K
Sbjct: 59 LSGLFFRLTNFIEKGVSPVFIFDGKPPEFKNRTISERRAAKEQAEAGLKEALKAGDNQAA 118
Query: 109 -SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S R+ +I +K L +G+P L+ E EAQ A + E + D S D D
Sbjct: 119 FSYARSSTRVDREIIDSSKRLLSLMGIPYLDAPSEGEAQAAFMVSEGIVDYSVSQDYDSL 178
Query: 168 LFGARTVYRDIWLGE----RGYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R++ + RG + +D++ L R L+ + +L+G+D++
Sbjct: 179 LFGAEKLVRNLTVSRKRKIRGRTITVNPETISLDEVLSGLEITREQLVEIGILIGTDFNS 238
Query: 219 GVRGLGPESACQIVK 233
G+RG+GP+ A +IV+
Sbjct: 239 GIRGIGPKKALKIVR 253
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 26/285 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG+K L I++ S + + +RV ID S + Q V +
Sbjct: 1 MGIKGLNSIIQQQVPSAIRPREMKQFFGRRVAIDASMSLYQFLIAVRQADGVQLASADGE 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R ++ +V DG P +K +R E Q L + +
Sbjct: 61 TTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTERRKETEQKLAELTEQAE 120
Query: 110 L----RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ RR + E + + K LGL +G+P ++ EAEAQCA L + S D D
Sbjct: 121 IMKHERRLVKVEQWHVAEAKKLLGL-MGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMD 179
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGL 223
+ + R + E +E+D + + LG + L+ L ++LG DY + ++G+
Sbjct: 180 TLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGV 239
Query: 224 GPESACQIVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
GP +A +++K G +N+V + I+S G AK E W +K
Sbjct: 240 GPVTALKLIKEHGSLENIV-EFISSGG-----NAKWKVPENWPYK 278
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 120/249 (48%), Gaps = 21/249 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDK-----LF 53
MGVK L DI++ + + L+ + + ID + Q + + RP +D
Sbjct: 1 MGVK-LKDIIQP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLD 105
L G+ +R ++I + I+V DG+ +K T +R + E + + D
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEA 117
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ ++R + S + +I+ +K L +G+P +E E EAQ A L S D D
Sbjct: 118 RKYAMRSSKLSPY--IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYD 175
Query: 166 IFLFGARTVYRDIWLGER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
LFGA+ V R++ + G + Y + + +L R LI + +L+G+D+S+G++G+G
Sbjct: 176 CLLFGAKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVG 235
Query: 225 PESACQIVK 233
++A ++ K
Sbjct: 236 AKTALKLAK 244
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 123/259 (47%), Gaps = 33/259 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L D++E + KT L + + + ID S + Q +V+ + Q +
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQ 99
L+G+F+R LI+ I+V DGS P +K +R L +EV
Sbjct: 61 TTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGT 120
Query: 100 DD---KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
++ K ++ ++ R + C+ K L L +GVP ++ EAEAQCA + +
Sbjct: 121 NEEVQKFAKRVITVTRKQNED--CI----KLLTL-MGVPIVKAPCEAEAQCAEIVKKGKA 173
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
S D D G+ + R ++ E + ++ +E+ + LG ++ I L++LLG
Sbjct: 174 WATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGC 233
Query: 215 DYSQGVRGLGPESACQIVK 233
DY ++G+GP+ A ++++
Sbjct: 234 DYCDSIKGIGPKRAIELIQ 252
>gi|358398186|gb|EHK47544.1| hypothetical protein TRIATDRAFT_263039 [Trichoderma atroviride IMI
206040]
Length = 812
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L K+ L +N R+ ID++ W Q Q P
Sbjct: 1 MGIKGIYKELGPGKRISLSKLASDSFENHNRPFRLAIDIAIWQFQNQAARGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+RL L+ IFV DG ++R SG
Sbjct: 57 -IRTLFYRLVRLLGTPIQPIFVFDGP----NKPKFKRNRRSG------------------ 93
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
G FS AK L G + EAEA+CA L + D S D D +FG
Sbjct: 94 -RGDGFSAA--HAKRLIRLFGFIAHDAPGEAEAECAFLQKNGVVDAVLSEDVDTIMFGCT 150
Query: 173 TVYRDIWLGE-RG----YVVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
++ W E +G ++ Y++D++ LG R ++ +A++ G DY +GV G GP
Sbjct: 151 RTMKN-WSAEGKGTRPTHISMYDVDELNLASLGLDREGMVLVAIMSGGDYIPEGVPGCGP 209
Query: 226 ESACQIVKS 234
+ AC+ K+
Sbjct: 210 KVACEAAKA 218
>gi|400597409|gb|EJP65142.1| DNA repair endonuclease rad2 [Beauveria bassiana ARSEF 2860]
Length = 808
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 47/245 (19%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ L ++ L LQ + R+ ID++ W Q Q P
Sbjct: 1 MGIKGIYGELGPGQRVSLSKLAADTLQAEGRPLRIAIDVAIWQFQAQAARGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+RL L+A+ IFV DG T +R SG R
Sbjct: 57 -IRTLFYRLVRLLAIPVQPIFVFDGP----NKPTTKRNKRSG-----------------R 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
G S +AK L G+P L+ EAEA+CALL + D S D D +FG
Sbjct: 95 GDGVANS----QAKRLIRLFGLPALDAPGEAEAECALLQRHGIVDAVLSEDVDTIMFGCT 150
Query: 173 TVYRDIWLGE------RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
R+ W E +V Y+ + G R ++ +AL+ G DY G+ G G
Sbjct: 151 KTLRN-WSAEGKTVTVPTHVSLYDTAAVANH-GLDRQGMVLVALMSGGDYLPDGLPGCGV 208
Query: 226 ESACQ 230
+ AC+
Sbjct: 209 KVACE 213
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 110/258 (42%), Gaps = 28/258 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-----TDK 51
MG+ K L+D S K L +R+ ID S I Q +S++ T+
Sbjct: 1 MGILGLSKLLYDKTPSAIKEQELQCYFGRRIAIDASMAIYQFLIALRSFQDGQGVELTND 60
Query: 52 L-----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
+ L GLF R ++ I+V DG P +K + R + Q
Sbjct: 61 MGEVTSHLNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQKADDAIQKFKKAQE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D + ++KM + E ++EAK L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGDAEMMEKMGKRTVRLTQE---QMEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGA + R + E + + + +DDI + G + L +LLG D
Sbjct: 178 AVGTEDMDALTFGAPIMLRHLTYSEAKKRPIAEFHLDDILQTSGMTMEQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVK 233
Y + G+GP A + +K
Sbjct: 238 YVPKIPGIGPHKAWEGIK 255
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 33/265 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L L K CI L + Q + +P L
Sbjct: 1 MGVTELGKLIGKEVRREVKLESLSGK--CIALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GLF+R L+ ++V DG P KL+ R + + ++ L +
Sbjct: 59 TSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEE--VLRAIKEG 116
Query: 111 RRNMGSEF--------SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
RR +++ S M+ EAK L +GVP ++ E EAQ A + + C S
Sbjct: 117 RREDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQ 176
Query: 163 DSDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLL 212
D D LFG+ + R++ + + + E+D + R L R LI LA+LL
Sbjct: 177 DYDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILL 236
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ GV G+GP+ A +++ G
Sbjct: 237 GTDYNPDGVPGVGPQKALKLIWEFG 261
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 29/263 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + +K L L L + + +D + Q + +P L
Sbjct: 1 MGVTELGKLIPKEARKELKLEQLSGRVIALD--AYNALYQFLASIRQPDGTPLMDSRGRV 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNL 104
L GLF+R L+ ++V DG P +K R + + + +
Sbjct: 59 TSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMAKAAAEGKT 118
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++++ + + M ++AKAL ++G+P ++ E EAQ A + + G S D
Sbjct: 119 EEVAKYAKRVVYITDSMAEDAKALLTAMGIPWVQAPSEGEAQAAHMAAKGSAWGAGSQDY 178
Query: 165 DIFLFGARTVYRDIW------LGERGYVVCYEMDDIERKLGF----GRNSLITLALLLGS 214
D LFGA + R++ +GE V E+ ++E L R LI LA+LLG+
Sbjct: 179 DSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELESALRALKLKSREQLIDLAILLGT 238
Query: 215 DYS-QGVRGLGPESACQIVKSVG 236
DY+ GV G+GP+ A +I++ G
Sbjct: 239 DYNPDGVPGVGPQRALKIIQEHG 261
>gi|367013806|ref|XP_003681403.1| hypothetical protein TDEL_0D06080 [Torulaspora delbrueckii]
gi|359749063|emb|CCE92192.1| hypothetical protein TDEL_0D06080 [Torulaspora delbrueckii]
Length = 641
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 59/287 (20%)
Query: 1 MGVKNLWDILESC--KKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRP-- 47
MGV +W++L+ K +PL R+ ID W+ + + P
Sbjct: 1 MGVPQVWELLKPHIKDKRVPLRKFAADFKSRYGSPVRIAIDGYTWLYECGFFSNQESPEK 60
Query: 48 -----QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
Q K L L HRL+ L++L+ I V DG + ++ S E+T +
Sbjct: 61 FAGQGQISKAVL-NLMHRLKELLSLDISFILVFDGEMKPW----FKNNFRSNDELTNVNL 115
Query: 103 NLDKMSSLRRNMGS--EF-SCM-----------IKEAKALGLSLGVPCLEGVEEAEAQCA 148
+ D S+ + ++ S EF +C+ ++ K L ++ + +E E EAQCA
Sbjct: 116 SEDYFSNWQEHLRSHKEFNTCLKANYVDDSTGFMRAVKLLLDTMKISYIEACGEGEAQCA 175
Query: 149 LLNLESLCDGCFSSDSDIFLFGARTVYRDIW-----LGERG---------------YVVC 188
L D S+DSD +FG+ + R+ G G ++
Sbjct: 176 WLQKNGYVDYALSNDSDTLIFGSTKMLRNYSKAIDDFGVTGVGSHRPEVRRDTKETFITV 235
Query: 189 YEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
E+DDI + +L+ ++LLG+DY+QG++GLG + ++ +
Sbjct: 236 VELDDIRESTTDRYEWWTLLFFSILLGADYNQGIKGLGKTKSARLAQ 282
>gi|320038686|gb|EFW20621.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 845
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 95/228 (41%), Gaps = 37/228 (16%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + H Q R+ ID+S W+ Q Q P+ LR LF+RL LI+L I
Sbjct: 77 LAIDHFQQTSRPLRIAIDVSIWLFQAQAAQGGLNPE-----LRALFYRLARLISLPVHPI 131
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSL 132
FV DGS Y+R G V ++ G + I+ +K L
Sbjct: 132 FVFDGS----GRPEYKR----GKLVIRN--------------GRSGAWNIRSSKRLIELF 169
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----YVV 187
G + EAEA+CA L + D S+D D +FG++ + + +G +V
Sbjct: 170 GFHHHDAPGEAEAECAKLQTMGIVDAAMSNDIDTVMFGSKITFMNFSRASKGPSAATHVS 229
Query: 188 CYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
Y D + F + ALL G DY GV GP+ A +I ++
Sbjct: 230 VYRRDGSAANVPFDVGGMALFALLSGGDYLPAGVPRCGPKLAAEIARA 277
>gi|303390841|ref|XP_003073651.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
gi|303302798|gb|ADM12291.1| Rad2 [Encephalitozoon intestinalis ATCC 50506]
Length = 558
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
+ +E EA+AQC + + DG + D+D+ L+G TVYR+ + +RG + Y +
Sbjct: 395 FNISYVEAPSEADAQCGFMCRNNTVDGVITEDNDVLLYGG-TVYRNFFRRDRG-IEKYSL 452
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ I+++L R +LI L+ LLGSDY+ GV+G+GP A + V+
Sbjct: 453 ERIKKELNLDRKNLIELSYLLGSDYTLGVKGIGPVKALEAVR 494
>gi|308499054|ref|XP_003111713.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
gi|308239622|gb|EFO83574.1| hypothetical protein CRE_03137 [Caenorhabditis remanei]
Length = 447
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 33/293 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
M + +W+ + + L L++K + ID W+ + +++ QT +L F R
Sbjct: 1 MTINGIWEWANHVSQKVALETLRDKVLAIDGHIWLYESLKGCETHHQQTPNSYLITFFTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
++ L L IP + + + QD+ K S + + +
Sbjct: 61 IQRLRELKI---------IPIVVFDSISSSSAAHEAADQDEFVPRKRRSFGDSPFTNLAD 111
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR---- 176
+ + +L GV + + EAQCA L + GC ++D D FLFG + +YR
Sbjct: 112 HVIKTNSLLSHFGVKVIIAPGDGEAQCARLEELGVVSGCITTDFDYFLFGGKNLYRFDFS 171
Query: 177 --DIWLGERGYVVCY---EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQ 230
+ G R + V + +IE+K+ R LI A+LLG DY Q GV+ +G +
Sbjct: 172 ATTMLSGARLHDVTHLSLGRMNIEKKV--ARPHLIATAILLGCDYYQRGVQNIGIITVFD 229
Query: 231 IVKSVGDN--------VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN 275
I+ GDN V+L R + S+V+R ++ E S K + + N
Sbjct: 230 ILAEFGDNGCKETDPQVILDRFS----SYVRREIPARSEDSSRKLRLRGKKFN 278
>gi|397642742|gb|EJK75426.1| hypothetical protein THAOC_02851 [Thalassiosira oceanica]
Length = 704
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 46/252 (18%)
Query: 1 MGVKNLWDILE--SCKKTLPL--HHLQNKR--------VCIDLSCWIVQ-LQNVNKSYRP 47
M V++LW L+ C + + L HL+ +R + +DLS W+++ L++
Sbjct: 61 MTVQSLWTALDESGCGQRVGLDAFHLRKRRESDEKHHILAVDLSLWVMEGLKSTVLDSLH 120
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ L +++R +L+ L L+FV +G +RR + G ++ + M
Sbjct: 121 ADPAVHL--VYNRTVSLLLLGFRLVFVMEG----------KRRSSLGQTASRGGSHF--M 166
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S+ RR C + L L LGV LE E E CALLN + DG SSD D F
Sbjct: 167 STSRR-------C----GEVLRL-LGVTVLEAEAEGEQLCALLNSRGIVDGVVSSDGDAF 214
Query: 168 LFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFG-----RNSLITLALLLGSDYSQGV 220
L+GAR +Y+ + +G V+ Y+ +++ G R L+ A L GSD QGV
Sbjct: 215 LYGARVIYKGFTMDNLTKGSVLKYDANELRVASSHGNFPLSREDLVAFAALSGSDVFQGV 274
Query: 221 RGLGPESACQIV 232
+ LG + A +
Sbjct: 275 QHLGWKKASMFL 286
>gi|340056397|emb|CCC50728.1| putative DNA repair protein RAD2 [Trypanosoma vivax Y486]
Length = 753
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P + EA+AQCA LN + L D F+ DSD+ + GA TV R + G R VV Y
Sbjct: 484 GIPFIISPNEADAQCAYLNSQRLVDAVFTEDSDVIVHGAPTVLRGFFSGNR-QVVAYHQS 542
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSV 235
D+ G ++ L+ LA+LLG DY++GV GL A +V SV
Sbjct: 543 DL-LTCGVDKSVLVALAILLGCDYAEGVHGLSLLEALHVVASV 584
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 103/256 (40%), Gaps = 23/256 (8%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQ---NVNKSYRPQT---- 49
MG+K L +L+ SC + + + HL + + ID S + Q N P
Sbjct: 1 MGIKGLMKLLQEEAPSCIREVQMSHLAGRSIAIDASMALYQFLIAIRSNDGAGPAQALTN 60
Query: 50 ----DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR------LNSGSEVTQ 99
D L+G+F R L+ ++V DG P +K +R N E
Sbjct: 61 QDGEDTSHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLEEAT 120
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
+ NL ++ + + S ++ K L +GVP L EAEA CA L
Sbjct: 121 EAGNLVEIDRFSKRLVHATSQHSQDCKELLRLMGVPVLTAPCEAEATCATLAKHHKVYAS 180
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYS 217
+ D D+ FG +YR + + V E ++ + L + L +L G DY
Sbjct: 181 GTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALKALDLTEQQFVDLCILCGCDYC 240
Query: 218 QGVRGLGPESACQIVK 233
+RG+GP+ A +K
Sbjct: 241 DSIRGIGPKKAFNGIK 256
>gi|374723540|gb|EHR75620.1| flap endonuclease-1 [uncultured marine group II euryarchaeote]
Length = 342
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 115/258 (44%), Gaps = 31/258 (12%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR--------- 55
NL DI + +T+ L+ L KRV +D Q + PQ D LR
Sbjct: 4 NLRDI--TSPETIDLNSLAGKRVGVDAFLTAFQFLTTMRDRSPQGDGGPLRAENGKVVSH 61
Query: 56 --GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNL 104
G +R L+A ++V DG+ P +K +R ++ + D
Sbjct: 62 LMGFLNRTTTLLAAGIKPVYVFDGTAPELKADEIAQRRARRVEAERIHKEALAAGDFPLA 121
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
KM+ + E M+ E K L LGVP ++ E E Q A++ + D + D
Sbjct: 122 QKMAQRIMHYSPE---MVAETKQLLDLLGVPWVDAKAEGEGQAAVMAAKGQLDVVATQDW 178
Query: 165 DIFLFGARTVYRDIWLG---ERGYVVCYE---MDDIERKLGFGRNSLITLALLLGSDYSQ 218
D L+G + R++ + G VV + +D++ + R LI LA+++G+D+
Sbjct: 179 DALLYGTPLLVRNLMSHGSKQHGRVVQAQKIILDEVLSENELTRAQLIDLAIMIGTDFHP 238
Query: 219 GVRGLGPESACQIVKSVG 236
G+RG+GP++ +++K+ G
Sbjct: 239 GIRGIGPKTGMKLIKAHG 256
>gi|330928880|ref|XP_003302439.1| hypothetical protein PTT_14244 [Pyrenophora teres f. teres 0-1]
gi|311322221|gb|EFQ89464.1| hypothetical protein PTT_14244 [Pyrenophora teres f. teres 0-1]
Length = 790
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 56/264 (21%)
Query: 1 MGVKNLWDILESCKKTLPL------HHLQNK---RVCIDLSCWIVQLQNVNKSY--RPQT 49
MG+ LWD ++ ++ +PL HH + R+ +D + W + Y R ++
Sbjct: 1 MGIPALWDTIKKYEECVPLAELAEAHHRSHGKPLRIAVDEADWRFNNLTPQQVYKIREKS 60
Query: 50 DKLFLRG----LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
++ +G +F+R+ L+ LN L+FV DG P ++R ++ ++
Sbjct: 61 NQHAFQGIEKAMFYRICRLLTLNIQLVFVFDG--PG---RPWKRGKRGQGKIDYEE---- 111
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
RR + S +C LG+P E EAEA+CA L + + D +S DSD
Sbjct: 112 -----RRLLQSVLTC-----------LGIPYHEAPGEAEAECARLQILDIVDAVWSQDSD 155
Query: 166 IFLFGARTVYRDIWLGERG---------------YVVCYEMDDIERKLGFGRNSLITLAL 210
+FG + D + + Y ++ G R ++ A+
Sbjct: 156 ALMFGCTFLLNDWRVAKEDGNEDRSKENTKKSGKYARVIRTHELRELHGLDREGMVLFAM 215
Query: 211 LLGSDY-SQGVRGLGPESACQIVK 233
L+G DY ++G+ G GP Q VK
Sbjct: 216 LVGGDYDTKGLPGCGPSMGMQAVK 239
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT---QDDKNLDKMSSL 110
L GLF+R ++ ++V DG P +K RR E ++ + S
Sbjct: 62 LSGLFYRTINIVEAGIKPVYVFDGKPPELKAKEIERRRVVREEAARKYEEAVQAGDLESA 121
Query: 111 RRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
RR M + + M+++AKAL ++G+P ++ E EAQ A + + S D D
Sbjct: 122 RRYAMMSARLTDEMVRDAKALLDAMGIPWVQAPAEGEAQAAYMARKGDAYASASQDYDSL 181
Query: 168 LFGARTVYRDIWLGER-------GYV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFG+ + R++ + R YV E+D + KLG +L+ + +LLG+DY
Sbjct: 182 LFGSPRLVRNLTISGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENLVDIGILLGTDY 241
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ G G+GP+ A Q+VK G
Sbjct: 242 NPDGFEGIGPKKALQLVKVYG 262
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GLF+R ++ +V DG P IK +R ++D + +LRR
Sbjct: 62 LSGLFYRTINILENGIKPAYVFDGKPPEIKAREIEKRRK-----IREDASKKYEEALRRG 116
Query: 114 ----------MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
M ++ + M+ +AK L ++G+P ++ V E EAQ A + + S
Sbjct: 117 DVEAARRYAMMSAKLTDEMVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDAWASASQ 176
Query: 163 DSDIFLFGARTVYRDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFG+ + R++ + R Y+ E+ + KLG R LI +ALL
Sbjct: 177 DYDSLLFGSPRLIRNLTISGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQLIYVALL 236
Query: 212 LGSDYS-QGVRGLGPESACQIVKS 234
+G+DY+ GV+G+GP+ A Q+VK+
Sbjct: 237 IGTDYNPDGVKGIGPKKALQLVKA 260
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 33/306 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCID----LSCWIVQLQNVNKSYRPQTDKL 52
MG+KNL ++ ++C + ++N ++V ID L ++V +++ + T +
Sbjct: 1 MGIKNLAQVIKDNCPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSNGEQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN------- 103
L G+F+R ++ ++V DG+ P +K +R SE D +
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQADHEEAKETGTA 120
Query: 104 --LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++K S + E + EA+ L +GVP + EAEAQCA+L S
Sbjct: 121 EEVEKFSRRTVRVTREHNA---EAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E+ E +D + L + I L +LLG DY
Sbjct: 178 EDMDTLTFDSPVLLRHLTFSEQRKEPIQEIFLDRVLEGLEMDQKQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
V+G+GP+ A +++K + L+ + E K +K + E W F +L E +
Sbjct: 238 VKGIGPKVALELIKK---HKTLENVVEE---IKKGSKYTLPEDWPFA---DARALFLEPD 288
Query: 280 VNGTDH 285
V+ DH
Sbjct: 289 VHKADH 294
>gi|448107610|ref|XP_004205405.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|448110596|ref|XP_004201669.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|359382460|emb|CCE81297.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
gi|359383225|emb|CCE80532.1| Piso0_003651 [Millerozyma farinosa CBS 7064]
Length = 669
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 25/256 (9%)
Query: 1 MGVKNLWDILESC---KKTLPLH-------HLQNKRVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ +LW L C + ++P+ H ++ R+ ID+ I ++ ++
Sbjct: 1 MGINDLWSSLGDCFDKRISIPVFLADFFAKHKRSPRLAIDIYSLI--YHSIYDAHNKDLS 58
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
K++LR + +L L + V DG +K Y + S + Q ++ K+
Sbjct: 59 KIYLRNIISKLLYLTQNGITYVVVFDGRFKPMKRRNYSSDMMSENRYDQLIESFVKVQFD 118
Query: 111 RRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ E S +I++ KA L + L+ EAEA+CA L + D + D+D+ +
Sbjct: 119 PESYCEEAYDSSLIEDLKANLKRLDIDFLQAPGEAEAECASLQKFGVVDYVLTHDNDVLV 178
Query: 169 FGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
FGA V RD E YV ++IE + G LI +A + G DYS
Sbjct: 179 FGATKVLRDFSKNEDARVKSPSSRNEYYVTPIYAENIENRAGIRYQDLIFIAAIRGGDYS 238
Query: 218 QGVRGLGPESACQIVK 233
+G+ +G A ++ +
Sbjct: 239 KGLDNMGITRAVKLAR 254
>gi|239607122|gb|EEQ84109.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 816
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 110/264 (41%), Gaps = 46/264 (17%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L ++ L + HLQ RV ID+S W+ Q+Q P+
Sbjct: 1 MGIPGLIQSLGPGERISLAKLAVDHLQRTSRPIRVAIDISIWLFQIQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L L +FV DG + TY+R K+ + R
Sbjct: 57 -LRTLFYRLVRLTGLPVHPLFVYDGP----QRPTYKR---------------GKL--IGR 94
Query: 113 NMG-SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
N G + +I+ +K L P EAEA+CA L + D S+D D +FG+
Sbjct: 95 NTGVGDLGRVIRRSKYLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSNDVDAIMFGS 154
Query: 172 RTVYRDI------WLGERGYVVCYEM----DDIERKLGFGRNSLITLALLLGSDY-SQGV 220
+ + +V Y D+ + + R +I ALL G DY GV
Sbjct: 155 KVTIMNFSKENSSGTNAATHVTLYRTEGTGDEEKPNVPLDRGGMILFALLSGGDYLPAGV 214
Query: 221 RGLGPESACQIVKSVGDNVVLQRI 244
GP+ A +IV++ N +LQ I
Sbjct: 215 PKCGPKLAGEIVQAGFGNELLQAI 238
>gi|327351073|gb|EGE79930.1| XPG family protein [Ajellomyces dermatitidis ATCC 18188]
Length = 838
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 110/264 (41%), Gaps = 46/264 (17%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L ++ L + HLQ RV ID+S W+ Q+Q P+
Sbjct: 1 MGIPGLIQSLGPGERISLAKLAVDHLQRTSRPIRVAIDISIWLFQIQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L L +FV DG + TY+R K+ + R
Sbjct: 57 -LRTLFYRLVRLTGLPVHPLFVYDGP----QRPTYKR---------------GKL--IGR 94
Query: 113 NMG-SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
N G + +I+ +K L P EAEA+CA L + D S+D D +FG+
Sbjct: 95 NTGVGDLGRVIRRSKYLIDLFRFPHHTAPGEAEAECARLQTSGVVDAVMSNDVDAIMFGS 154
Query: 172 RTVYRDI------WLGERGYVVCYEM----DDIERKLGFGRNSLITLALLLGSDY-SQGV 220
+ + +V Y D+ + + R +I ALL G DY GV
Sbjct: 155 KVTIMNFSKENSSGTNAATHVTLYRTEGTGDEEKPNVPLDRGGMILFALLSGGDYLPAGV 214
Query: 221 RGLGPESACQIVKSVGDNVVLQRI 244
GP+ A +IV++ N +LQ I
Sbjct: 215 PKCGPKLAGEIVQAGFGNELLQAI 238
>gi|156839544|ref|XP_001643462.1| hypothetical protein Kpol_483p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156114073|gb|EDO15604.1| hypothetical protein Kpol_483p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 397
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 54/285 (18%)
Query: 1 MGVKNLWDILES--CKKTLPL---------HHLQNKRVCIDLSCWIVQL------QNVNK 43
MGV +WD+L+ +P H ++ ++ ID W+ + +++K
Sbjct: 1 MGVPQIWDLLKPILVDSRVPFRKFVNDFNQEHGRSPKIAIDAYLWLFECGFISREDSISK 60
Query: 44 SYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRR---LNSGSEVTQ 99
T+ L L HRL+ ++ N G I V DGS+ P+ K + R L + +
Sbjct: 61 YITHGTESKSLLNLIHRLKEFLSFNVGFILVFDGSMKPSFKKDSGRYDSTLLENDLYFNE 120
Query: 100 DDKNLD------KMSSLRRNMGS--------EFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
K++D K +S N+G + S + K++ + ++ EAEA
Sbjct: 121 MFKDIDYKDIWDKHNSFHSNVGKCIGQESGLQNSDFLDNLKSILKDFKISYIDACGEAEA 180
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW-----LGERG------------YVVC 188
QC+ L + D ++DSD FG + R+ LG G +V
Sbjct: 181 QCSWLQVNGYVDFVLTNDSDSLFFGCTKLLRNYSKYTQDLGSSGNSPIKKPDSRESFVTI 240
Query: 189 YEMDDIE--RKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQI 231
+M+ I K+ +S + ++LLG DY+QGV+GLG A ++
Sbjct: 241 VDMEKIRLLMKVRTDPDSFLLFSVLLGGDYNQGVKGLGKAKAAKL 285
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDK-----LF 53
MGVK L DI+ + + L+ + + ID + Q + + RP +D
Sbjct: 1 MGVK-LKDIIRP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLD 105
L G+ +R ++I + I+V DG+ +K T +R + E + + D
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEA 117
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ ++R + S + +I+ +K L +G+P +E E EAQ A L S D D
Sbjct: 118 RKYAMRSSKLSPY--IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYD 175
Query: 166 IFLFGARTVYRDIWLGER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
LFGA+ V R++ + G + Y + + +L R LI + +L+G+D+S+G++G+G
Sbjct: 176 CLLFGAKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVG 235
Query: 225 PESACQIVK 233
++A ++ K
Sbjct: 236 AKTALKLAK 244
>gi|313246225|emb|CBY35158.1| unnamed protein product [Oikopleura dioica]
Length = 846
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 27/259 (10%)
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L K+SS + + K+A + G EAEAQCA + ++ G + D
Sbjct: 600 LQKLSSALKITSVPSQQLYKDAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDD 659
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223
D FLFG RTV + + LG V Y++ + E F R LI LA L GSDY G++ +
Sbjct: 660 GDTFLFGGRTVIKGLTLG-NMVPVKYDIQETE----FSREFLIALAQLTGSDYCNGIKSV 714
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
G ++A +I++ D +R L+ N+ + W N +SL N
Sbjct: 715 GSKTAIKILEEFDD----RRSEDPHLTL-----NTFSKWW----NTHHKSLTTGTNGIPL 761
Query: 284 DHSLQR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWP 338
L++ + P + AY +P + + R L R+ Q A+ +W
Sbjct: 762 RAKLKKLNIDADFPSDRSRHAYLHPNVEKLKDKKI-RFTVPDL---NRIRQYAARKLEWQ 817
Query: 339 PEKTDEYILPKIAERDLRR 357
E D++I+P + E+ +R
Sbjct: 818 EEAIDQHIIPLLPEKMEKR 836
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 33/305 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCID----LSCWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++ E+C + ++ ++V ID L +++ +++ + T +
Sbjct: 1 MGIKSLYQVIRENCPDAVKEGEIKTQFGRKVAIDASMSLYSFLIAVRSGGEQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L G+F+R ++ ++V DG+ P +K +R SE T
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQEQHEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ +++ S + E + EA+ L +GVP + EAEAQCA+L S
Sbjct: 121 EEVERFSRRTVRVTKEHNA---EAQRLLKLMGVPYIVAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F A + R + E+ E +D + L F N I + +LLG DY
Sbjct: 178 EDMDTLTFNAPVLLRHLTFSEQRKEPIQEIHLDRVLEGLDFDLNQFIDMCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
V+G+GP++A ++K ++ L+++ K K + E W ++ + L QE +
Sbjct: 238 VKGIGPKNAHALIK---EHKTLEKVVE---HIEKTGKYTLPEDWPYQ---EARLLFQEPD 288
Query: 280 VNGTD 284
V D
Sbjct: 289 VRAAD 293
>gi|440296320|gb|ELP89147.1| hypothetical protein EIN_485090 [Entamoeba invadens IP1]
Length = 688
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 131 SLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL-GERGYVVCY 189
+L +P + EAEAQCA N +CD S+DSD+F+FGA+ V R+ + GE +
Sbjct: 474 ALEIPHVFSPWEAEAQCAYYNKTKMCDYVASNDSDVFVFGAKNVIRNFLIDGEVATI--- 530
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ I LALLLGSD+++GV +GP+ A QI+K
Sbjct: 531 ------HTANLTQEKYIFLALLLGSDFTEGVGKVGPKRAIQIIK 568
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 119/263 (45%), Gaps = 29/263 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ ++ + L +L + C+ L + Q + +P L
Sbjct: 1 MGVVELGKLIGREIRRDVKLENLAGR--CVSLDAYNALYQFLASIRQPDGTPLMDREGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKL----STYRRRLNSGSEVTQDDKNLDK 106
L GLF+R L+ ++V DG P KL S + R + EV + K K
Sbjct: 59 TSHLSGLFYRTINLLESGIKPVYVFDGKPPEFKLAEIESRRKTREKAMEEVVKALKEGRK 118
Query: 107 MSSLRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++ + F S M++E++ L +GVP ++ E EAQ A + ++ C S D
Sbjct: 119 EDVIKYAKRAVFITSEMVEESRKLLSYMGVPWVQAPSEGEAQAAYMVVKGHCWAVGSQDY 178
Query: 165 DIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLGS 214
D LFG+ + R++ + + V E+D + + L R LI LA+LLG+
Sbjct: 179 DALLFGSPRLVRNLAVSPKRRVGEEVVELAPEIIELDAVLKALRLKNREQLIDLAILLGT 238
Query: 215 DYS-QGVRGLGPESACQIVKSVG 236
DY+ GV G+GP+ A +++ G
Sbjct: 239 DYNPDGVPGMGPQKALKLIWEFG 261
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
++V DG PA K +R + E K ++++ +
Sbjct: 71 AGIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G + E ++++ ++L R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IVK D
Sbjct: 251 LEIVKYSKD 259
>gi|258563548|ref|XP_002582519.1| predicted protein [Uncinocarpus reesii 1704]
gi|237908026|gb|EEP82427.1| predicted protein [Uncinocarpus reesii 1704]
Length = 772
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 44/249 (17%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L L S + + HLQ R+ +D S W+ Q+Q+ P+
Sbjct: 1 MGIPGLVQELGSGDRISLAKFAIDHLQRTARPVRIAVDASIWLFQVQSAQGGLNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L+AL +FV DG + Y+R K+ + R
Sbjct: 57 -LRALFYRLARLLALPIQPLFVFDGP----ERPEYKR---------------GKL--IAR 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
N GS +I K L G + EAEAQCA L + + D S+D D +FG++
Sbjct: 95 NGGSH---IIGSFKRLIELFGFNFYDAPGEAEAQCAKLQIAGIVDASLSNDIDTLMFGSQ 151
Query: 173 TVYRDIWL------GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
+ G +V Y + F ++ ALL G DY GV GP
Sbjct: 152 VTLLNFSKASPKNSGPATHVNVYRHSSPNANVTFDTAGMVLFALLSGGDYLPAGVPRCGP 211
Query: 226 ESACQIVKS 234
+ A +IV++
Sbjct: 212 KLAAEIVRA 220
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 15/198 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RR--RLNSGSEVTQDDKNLDKMSS 109
L G+F R + +++ DG PA+K T RR R +G + D+ +
Sbjct: 59 LSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVRREAGVQWEAALARGDQEEA 118
Query: 110 LRRNMGSEFSC--MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
++ S +I +K L +GVPC++ E EAQ A + S D D
Sbjct: 119 YKQARASSRVTPEIIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSL 178
Query: 168 LFGARTVYRDIWLGER----GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R++ + + G + + +D++ LG R LI +L+G+D++
Sbjct: 179 LFGAPLLVRNLTVSSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNP 238
Query: 219 GVRGLGPESACQIVKSVG 236
G+RG+GP++A +IVK G
Sbjct: 239 GIRGVGPKTALKIVKKDG 256
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL----NSGSEVTQDDKNLDKMSS 109
L GL R LI N I+V DG P K ST +R N+ + K D+ S+
Sbjct: 59 LSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGDEESA 118
Query: 110 LRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ M S + +I +K L +LG+ ++ EE EAQ + + S D D
Sbjct: 119 RKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQDYDSL 178
Query: 168 LFGARTVYRDIWLGE----RGYVVCY-----EMDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R+I + RG V+ ++++ L + LI +ALL+G+DY+
Sbjct: 179 LFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIGTDYNS 238
Query: 219 GVRGLGPESACQIVK 233
GV G+GP++A +IV+
Sbjct: 239 GVPGVGPKTAVKIVR 253
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 16/200 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-----DKNLDKMS 108
L G+ +R+ +I + IFV DG P K R +E + ++
Sbjct: 58 LSGILYRVSNMIEVGMRPIFVFDGEPPVFKQKEIEERKERRAEAEEKWIAAIERGEKYAK 117
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ +++ +K L +GVP ++ E EAQ A + + D S D D L
Sbjct: 118 KYAQAAARVDEYIVESSKKLLEYMGVPWVQAPSEGEAQAAYMAAKGDVDFTGSQDYDSLL 177
Query: 169 FGARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLLGSDYS 217
FG+ + R++ + G+ YV V E+ D+ R+LG R L+ +ALL+G+DY+
Sbjct: 178 FGSPKLARNLAITGKRKLPGKNVYVEVKPEIIDLNGNLRRLGITREQLVDIALLVGTDYN 237
Query: 218 QGVRGLGPESACQIVKSVGD 237
+GV+G+G + A + +K+ GD
Sbjct: 238 EGVKGVGVKKAYKYIKTYGD 257
>gi|170584794|ref|XP_001897178.1| XPG N-terminal domain containing protein [Brugia malayi]
gi|158595426|gb|EDP33981.1| XPG N-terminal domain containing protein [Brugia malayi]
Length = 479
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 41/241 (17%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV ++W+ ++ + + + L+NKR+ ID W+ ++ + ++ T K +L + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISVLRNKRIAIDGHTWLCEVLRGSVAHCSTTRKPYLSTFYTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR-------- 112
R+L+ I V DG ++ G E T D + M +R+
Sbjct: 61 CRSLLEEGVEPIVVFDG-------------IDEG-ERTNIDYGISSMRKVRKRGSKYWTS 106
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ E ++E K L S+GV +E E EAQCA L L D F FG +
Sbjct: 107 ELKQEMVPKVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRGLVD---------FGFGGK 157
Query: 173 TVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESACQI 231
+ ++ MD ++ L R+ LI + +++G DY+Q G+ G+G +A +I
Sbjct: 158 I---------QNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIPGVGLVTALEI 208
Query: 232 V 232
V
Sbjct: 209 V 209
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 32/265 (12%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----- 53
MGV +L DI+ KT+ L L K + ID + Q + +P L
Sbjct: 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIR--QPDGTPLMDNNGR 67
Query: 54 ----LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L GLF+R ++ ++V DG P +K RR E + + +
Sbjct: 68 ITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGD 127
Query: 110 L---RRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L RR M ++ + M+++AK+L ++G+P ++ E EAQ A + + S D
Sbjct: 128 LELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQD 187
Query: 164 SDIFLFGARTVYRDIWLGER-------GYVVC----YEMDDIERKLGFGRNSLITLALLL 212
D LFG+ + R++ + R YV E+D + +LG +LI + +LL
Sbjct: 188 YDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILL 247
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ G G+GP+ A Q+VK+ G
Sbjct: 248 GTDYNPDGFEGIGPKKALQLVKAYG 272
>gi|392563460|gb|EIW56639.1| hypothetical protein TRAVEDRAFT_73115 [Trametes versicolor
FP-101664 SS1]
Length = 1027
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 136/382 (35%), Gaps = 87/382 (22%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LWDIL + L HL + RV ID S W + P
Sbjct: 1 MGVAGLWDILRPAGQLRSLTHLSVTDGFEANPDGKRGFRVGIDASIWFYHAAYGKEGENP 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ LR LF R L+ + +FV DG R + G +T KN
Sbjct: 61 E-----LRTLFFRCARLMEMPFLPVFVFDGP--------KRPDMKRGKRIT--GKN---- 101
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+++ + + + G EAEA+ A LN + D S D D F
Sbjct: 102 -----------HWLVQGMQEIITAFGFEWRMAPGEAEAELAYLNRIGVIDAVLSDDVDTF 150
Query: 168 LFGARTVYRD---IWLGERG-------------YVVCYEMDDI--ERKLGFGRNSLITLA 209
LFGA+ V R+ G +G + + Y DI + + LI +
Sbjct: 151 LFGAKMVIRNKNATLSGNKGQDMKNSAGKDDGNHAMVYRSSDILNREDIQLTQGGLILIG 210
Query: 210 LLLGSDYSQ-GVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKC 267
+L G DY Q G+ G GP A + K GD ++ A+ +E
Sbjct: 211 VLRGGDYCQEGLEGCGPALAHGLAKCGFGDTLLAT------------ARTKTREELEEFL 258
Query: 268 NNKEESLNQEINVNGTDH----------SLQRETPFSQVIDAYSNPKCYSADSEAVHRVL 317
+ + + E+ N H S+ + P V+ AY+NP A A +
Sbjct: 259 DGWRDEIRAELRTNARGHLPRKSPKLSRSIPDDFPNVDVVLAYTNPVTSEAKGRAYKNAV 318
Query: 318 AQHLFQH--ARLHQVCAQFFQW 337
+ ++ +C +F+W
Sbjct: 319 LNWDKEPDLGKIAGLCEMYFEW 340
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 28/262 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR---------P 47
MG+ K L+D + + L +R+ ID S I Q K ++
Sbjct: 1 MGILGLSKLLYDKSPNAIRERELKSFFGRRIAIDASMSIYQFIIAMKGFQDGQGMELTNE 60
Query: 48 QTDKL-FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
Q D L GLF R +I I+V DG P +K R +E +
Sbjct: 61 QGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQKAAEAEREFEKAKD 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + E I+E+K L +GVP ++ EAEAQCA L +
Sbjct: 121 AGDDEMMEKMSKRTVRVSRE---QIEESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+ + R + + ++ + +D++ + G + + L +LLG D
Sbjct: 178 AVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGD 237
Y V G+GP+ A + ++ G+
Sbjct: 238 YVPKVPGIGPQRAWEGIQRYGN 259
>gi|224002667|ref|XP_002291005.1| nuclease, Fen1 like, Rad27 family [Thalassiosira pseudonana
CCMP1335]
gi|220972781|gb|EED91112.1| nuclease, Fen1 like, Rad27 family, partial [Thalassiosira
pseudonana CCMP1335]
Length = 754
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 44/260 (16%)
Query: 1 MGVKNLWDILE--SCKKTLPLHHLQ-------NKR---VCIDLSCWIVQ-LQNVNKSYRP 47
M V +LW +L+ C + + + N R + +D S WI + + + S
Sbjct: 1 MTVSSLWTVLDEAGCGRPVGIEDFDTSNTSNINSRPTILAVDTSIWICEGISSTALSSFH 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
L+L ++ R L+ L GL+FV +G +RR+ S + ++ +
Sbjct: 61 SDPALYL--VYQRTTKLLKLGLGLVFVLEG----------KRRVRSTYQSSEHHE----- 103
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+R GS+F + ++L LGVP + E EA CALLN + +CDG S+D D F
Sbjct: 104 -LKQRRSGSQFWSATERCESLLRLLGVPVVRAEAEGEALCALLNAKGVCDGVISNDGDCF 162
Query: 168 LFGARTVYRDIWLG--ERGYVVCYE----MDDIE------RKLGFGRNSLITLALLLGSD 215
LFGA+T+Y + E V+CY+ M ++ + + R L+ ALL GSD
Sbjct: 163 LFGAKTLYTKFTMENLESRQVMCYDATALMATVDSDGLNGKTITLSREDLVAFALLTGSD 222
Query: 216 -YSQGVRGLGPESACQIVKS 234
+ G+ +G + A Q + +
Sbjct: 223 MFGAGLSHVGHKKAVQFLHT 242
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L +L K CI L + Q + +P L
Sbjct: 1 MGVTELGKLIGKDIRREVKLENLAGK--CIALDAYNSLYQFLASIRQPDGTPLMDRVGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS-----EVTQDDKN 103
L GLF+R L+ ++V DG P KL+ RR++ + + ++ +
Sbjct: 59 TSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGRK 118
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
D ++R + S M+++AK L +GVP ++ E EAQ A + C S D
Sbjct: 119 EDVAKYMKRAVFLT-SDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 164 SDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLG 213
D LFG+ + R++ + R + E+D + + L R LI LA+LLG
Sbjct: 178 YDSLLFGSPRLVRNLAVSPRRKIGEEVIELSPEIIELDAVLKSLRLKNREQLIDLAILLG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVG 236
+DY+ GV G+GP+ A ++V G
Sbjct: 238 TDYNPDGVPGVGPQKALKLVWEFG 261
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 32/265 (12%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----- 53
MGV +L DI+ KT+ L L K + ID + Q + +P L
Sbjct: 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIR--QPDGTPLMDNSGR 67
Query: 54 ----LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L GLF+R ++ ++V DG P +K RR E + + +
Sbjct: 68 ITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGD 127
Query: 110 L---RRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L RR M ++ + M+++AK+L ++G+P ++ E EAQ A + + S D
Sbjct: 128 LELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQD 187
Query: 164 SDIFLFGARTVYRDIWLGER-------GYVVC----YEMDDIERKLGFGRNSLITLALLL 212
D LFG+ + R++ + R YV E+D + +LG +LI + +LL
Sbjct: 188 YDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILL 247
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ G G+GP+ A Q+VK+ G
Sbjct: 248 GTDYNPDGFEGIGPKKALQLVKAYG 272
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 128/273 (46%), Gaps = 34/273 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MGV NL DI+ + + + L L+ + + ID + Q ++ + +P L
Sbjct: 1 MGV-NLSDIVTAHE--ISLKDLKGRVIAIDAYNSLYQFLSIIR--QPDGTPLRDSRGRVT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
L GL +R +A ++V DG P +K+ T + R++ + ++ + + L
Sbjct: 56 SHLSGLLYRTANYMAEGIKPVYVFDGRPPELKMRTIQERMHVRTRALEEWEEALERGDLE 115
Query: 112 ----RNMGSEFSC--MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
R + F M+ EAK L +GVP ++ E EAQ A + S D D
Sbjct: 116 EARTRAQQASFLTRDMVDEAKKLLDHMGVPWVQAPSEGEAQAAFMAQRGDAYASASQDFD 175
Query: 166 IFLFGARTVYRDIWLG-------ERGYV-VCYEM---DDIERKLGFGRNSLITLALLLGS 214
LFG + R++ + +R YV V EM ++ + L R L+ + +L+G+
Sbjct: 176 SLLFGTPRLVRNMAITGKRKLPRKRVYVEVKPEMLVLNETLKNLEITREQLVDIGILVGT 235
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASE 247
D++ G++G+GP++A +++K G L+R+ E
Sbjct: 236 DFNPGIKGIGPKTALKLIKKFGS---LERVMDE 265
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 26/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV ++ +++E K + L K + ID + Q K P D
Sbjct: 1 MGV-DIKELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSH 59
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKM 107
L GLF+R I L ++V DG P +K RR E + + +L++
Sbjct: 60 LNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLEEA 119
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ + M+ +AK L +GVP +E E EAQ A + + S D D
Sbjct: 120 RIYAQQTSRLTAAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQDFDSL 179
Query: 168 LFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDY 216
LFG+ + R++ + G+R YV E++++ R G L+ + +L+G+DY
Sbjct: 180 LFGSPRLVRNLAITGKRKLPRKDVYVEVKPEIVELEELLRVHGITHQQLVVIGILVGTDY 239
Query: 217 S-QGVRGLGPESACQIVKSVGD 237
+ +G RG+G + A ++VK + D
Sbjct: 240 APEGARGIGVKKALKLVKELKD 261
>gi|449544097|gb|EMD35071.1| hypothetical protein CERSUDRAFT_96986 [Ceriporiopsis subvermispora
B]
Length = 949
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 153/386 (39%), Gaps = 95/386 (24%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LW++L +T L HL + RV ID S W + P
Sbjct: 1 MGVPGLWEVLRPAGETRSLTHLAVVDGFEANPAGARGFRVGIDASIWFFHATYGREGENP 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK- 106
+ LR LF R L+++ +FV DG K ++R G V+ + +++
Sbjct: 61 E-----LRTLFFRCTRLMSMPFLPLFVFDGP----KRPEFKR----GKRVSGKNNWMEQG 107
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
M + G E+ KA G EAEA+ A LN + D S D D
Sbjct: 108 MQEIIHAFGFEWR------KAPG------------EAEAELAYLNRIGVIDAVLSDDVDT 149
Query: 167 FLFGARTVYRDIWL---GERG-------------YVVCYEMDDIER--KLGFGRNSLITL 208
FLFGA V R+ + G RG +V Y+ + + + + +I
Sbjct: 150 FLFGAAVVVRNPSVTLSGNRGHSLKNAAGRDDGNHVAIYKSSTLAKHENVRLTQGGMILF 209
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVK-SVGDNVV--LQRIASEGLS-FVKRAKNSKKEGW 263
+L G DY Q G+ G G +A + K GD+++ + + E LS F+ EGW
Sbjct: 210 GILCGGDYHQAGLMGCGATTAHALAKCGFGDSLLEAVHALPRELLSEFL--------EGW 261
Query: 264 SFKCNNKEESLNQEINVNGTDH------SLQRETP--FSQ--VIDAYSNPKCYSADSEAV 313
E + QE+ N H SL ++ P F V+ +Y+NP + + +
Sbjct: 262 -------REEIRQELKTNSKGHLGRKMPSLAKKIPEDFPNIDVLLSYTNPITSESRGKTL 314
Query: 314 HRVLAQHLFQH--ARLHQVCAQFFQW 337
+ + R+ +C +F+W
Sbjct: 315 KDFDIDWVKEPDLGRVAGLCEMYFEW 340
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R +I ++V DG P +K S +R +E + D+ ++
Sbjct: 64 LLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSV 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K + E S +EAK L +G+P L+ EAEAQCA L S D
Sbjct: 124 NKFEKRLVKVTKEQS---EEAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + EM + + + G + L +LLG DY +RG
Sbjct: 181 DALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKKAFELIK 251
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MG+ K L+D + + + + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDKSPNAIREQEMKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R +I I+V DG P +K R +E +
Sbjct: 61 KGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQKAAEAEKEFEKAKD 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + E I E+K L +G+P ++ EAEAQCA L +
Sbjct: 121 AGDDEMMEKMSKRTVRVSRE---QIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+ + R + + ++ V +D++ + G + + L +LLG D
Sbjct: 178 AVGTEDMDALTFGSTIMLRHLNISDAKKRPVAEIHLDEVLQTTGLSMDQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y V G+GP+ A + ++ G
Sbjct: 238 YVPKVPGIGPQKAWEGIQRYG 258
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 35/254 (13%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L L ++V ID + Q + + P D L G F+R L+
Sbjct: 11 RKEIELEGLYGRKVAIDAFNAMYQFLSTIRQRDGTPLMDSRGRITSHLSGFFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ-----------DDKNLDKMSSLRRNMG 115
+V DG P K +R + + + ++ M + R N G
Sbjct: 71 AGIKPAYVFDGKPPEFKRKEIEKRREAREKAEERWHEALERGDLEEAKKYAMRATRVNEG 130
Query: 116 SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVY 175
+I +AK L +G+P ++ E EAQ A + + S D D LFGA +
Sbjct: 131 -----LINDAKKLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAPRLV 185
Query: 176 RDIWL-------GERGYVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
R++ + G+ YV ++++ ++LG R LI +A+L+G+DY+ G++G+
Sbjct: 186 RNLTITGRRKLPGKNAYVEVKPELVVLEEVLKELGVDREKLIEMAILVGTDYNPGGIKGI 245
Query: 224 GPESACQIVKSVGD 237
GP+ A IVK D
Sbjct: 246 GPKKALTIVKRTKD 259
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 41/257 (15%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K+V ID + Q + + P D L G F+R L+
Sbjct: 11 RKEIELENLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+V DG PA K + L G E+ + K + + L
Sbjct: 71 AGIKPAYVFDGEPPAFKKKELEKRREAREEAEEKWHEALERG-EIEEAKKYAMRATKLN- 128
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+I++AK L +GVP ++ E EAQ A + + S D D LFGA
Sbjct: 129 ------ETLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAP 182
Query: 173 TVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GV 220
+ R++ + R G V E ++++ R+LG R LI LA+L+G+DY+ G+
Sbjct: 183 RLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGI 242
Query: 221 RGLGPESACQIVKSVGD 237
+G+GP+ A IVK D
Sbjct: 243 KGIGPKKALTIVKRSKD 259
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG-------------ERGYVVC-YEMDDIERKLGFGRNSLITL 208
D+D +FG + + R++ +RGY++ ++ + + L N I
Sbjct: 181 DADALVFGTKILIRNLNANASSTSQNKNKNSSKRGYILTEINLEQVLKGLNLNMNEFIDF 240
Query: 209 ALLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 CILCGCDYCDTIKGIGSKTAYNLIK 265
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 114/290 (39%), Gaps = 36/290 (12%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYRP 47
MG++ L ++ + K + + ++V ID S I Q Q +
Sbjct: 1 MGIQGLSRVICDNAPAATKQNDIKNYFGRKVAIDASMSIYQFLIAVRQSDGQQLTNEAGE 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------T 98
T L G+ +R ++ +V DG P +K ++R +E T
Sbjct: 61 TTSHLM--GMLYRTIRMVENGIKPAYVFDGKPPTLKSGELQKRGERRAEAQKEADTALET 118
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
D +N ++ S + E + +E + L +G+P +E EAEAQCA L
Sbjct: 119 GDTENFNRFSRRTVKVTKEQN---QECRRLLKLMGIPIVEAPCEAEAQCAALAKAGKVYA 175
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDY 216
S D D FGA + R + E + E + + L F + I L +LLG DY
Sbjct: 176 AGSEDMDTLTFGAPVLLRHLTFSEAKKIPISEFNTQKVLEGLNFSHDEFIDLCILLGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+RG+GP A Q++K R + + + K E W FK
Sbjct: 236 CDSIRGIGPHRAVQLMKE-------HRTIENIIKSIDKTKYKVPENWPFK 278
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 41/336 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ S K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKN 103
L G+F+R ++ N ++V DG P +K +RL E + D+
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++++ + + +EAK L +G+PC++ EAEAQCA L S D
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQ 218
D + + R + E + +D IE K L + I L +LLG DY +
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKM---PIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVVLQRIASEGLSFVK--RAKNSKKEGWSFKCNNKEESL 274
++G+G +A +++K G DN+V ++K + K + E W F ++ +
Sbjct: 238 SIKGIGQATAFKLIKEHGSLDNIV---------EWIKNNKTKYTLPENWPFD-EARQLFM 287
Query: 275 NQEINVNGTDHSLQRETP-FSQVIDAYSNPKCYSAD 309
N E+ N ++ SL+ + P +I+ K +S D
Sbjct: 288 NPEV-TNASEISLKWKEPDVDGLIEFMVKQKGFSED 322
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 25/248 (10%)
Query: 1 MGVKNLWDILESCKKTL----PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG 56
MG+ L D++ S + + K + +D S + Q + S P L G
Sbjct: 1 MGITKLADLIRSNARDAVSYKDISDYTGKAIALDTSIVVNQFRAATPSLSP------LIG 54
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
+F R + + +FV DG P K + +R S + + K SS R+
Sbjct: 55 VFFRALTFLEHDIKPVFVFDGRPPGEKRAVLEKRAESAGWRSPNRKG--TASSSTRD--- 109
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
C+ + L L +GVP ++ +AEA CA L E D S D D FGA + R
Sbjct: 110 ---CL----QLLKL-IGVPVIQAPGDAEALCAWLVKEGTVDAVASEDMDTLPFGASILIR 161
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS-- 234
+ + G V+ Y + + +L + L +LLG DY + + GLGP+ A +++
Sbjct: 162 QLNSKKDGEVIEYSLSKLLERLQINHQEFVDLCILLGCDYCEKICGLGPKRALTLIQKHR 221
Query: 235 VGDNVVLQ 242
+NV+L
Sbjct: 222 TIENVILH 229
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQDDKN 103
L G+F+R L+ N ++ DG +K T + R LN + ++K+
Sbjct: 58 LSGIFYRTATLLENNIKPVYSFDGKPYRLKDETLKERKAIKEKNIAELN----LAMENKD 113
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+K+ +L + + ++ E+K L +GVP ++ E EAQ + ++ D S D
Sbjct: 114 AEKIKTLSSRINYITADIVSESKKLLDMMGVPWVQAPSEGEAQASYMSKVGAVDSVISQD 173
Query: 164 SDIFLFGARTVYRDIWLGERGYV--------VCYEMDDIER---KLGFGRNSLITLALLL 212
D L GAR V R+ + R + + E+ D++ LG ++ LI + +L+
Sbjct: 174 YDCLLLGARRVLRNFTMYGRRRISGTGKFINITPEIIDLKENLDNLGITQDQLIGIGILV 233
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+D++ G+RG+G ++ ++K GD
Sbjct: 234 GTDFNPGIRGIGAKTGLSLIKKYGD 258
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MG+ K L+D + + L + +R+ +D S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDKSPNAIREQELKNFFGRRIAVDASMSIYQFIIAMKGFQDGQGLELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R +I I+V DG P +K R +E +
Sbjct: 61 KGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAERAFEKAKD 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + + I E+K L +G+P ++ EAEAQCA L +
Sbjct: 121 AGDDEMMEKMSKRTVRVSRD---QIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+ + R + + ++ +V +D++ + G + + L +LLG D
Sbjct: 178 AVGTEDMDALTFGSTVMLRHLNISDAKKRPIVEIHLDEVLQTTGLSMDQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y V G+GP+ A + ++ G
Sbjct: 238 YVPKVPGIGPQKAWEGIQRYG 258
>gi|189198980|ref|XP_001935827.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982926|gb|EDU48414.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 782
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 52/258 (20%)
Query: 1 MGVKNLWDILESCKKTLPL------HHLQNK---RVCIDLSCWIVQLQNVNKSYRPQTDK 51
MG+ LWD ++ ++ + L HH + R+ +D + W + N+ + +
Sbjct: 1 MGIPALWDTIKKYEECVLLAELAEAHHRSHGKPLRIAVDEADW--RFNNLTQQQVYTIRQ 58
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+ +F+R+ + LN LIFV DG P ++R ++ ++ R
Sbjct: 59 SIEKAMFYRICHFLTLNIQLIFVFDG--PG---RPWKRGKRGQGKIDYEE---------R 104
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R + S +C LGVP E EAEA+CA L + + D +S DSD +FG
Sbjct: 105 RLLQSVLNC-----------LGVPYHEAPGEAEAECARLQILGIVDAVWSQDSDALMFGC 153
Query: 172 RTVYRDIWLGERG---------------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ D + + Y +++ G R ++ A+L+G DY
Sbjct: 154 TFLLNDWRVAKEDSNKDRSKENTKKSGKYARVIRTNELRELHGLDREGMVLFAMLVGGDY 213
Query: 217 -SQGVRGLGPESACQIVK 233
++G+ G GP A Q VK
Sbjct: 214 DTKGLPGCGPSMAMQAVK 231
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 1 MGVKNLWDIL-ESCKKTL---PLHHLQNKRVCIDLSCWIVQLQNVNKSY-----RPQTDK 51
MG+K L +L E+ K+ + PL + +K+V ID S + Q +S +
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQDD 101
L G F+R ++ L ++V DG P IK+ +R SEV D
Sbjct: 61 SHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVG--D 118
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K L +M R+ + + E K L +G+P EAEA CALL + G +
Sbjct: 119 KELMEMYDKRKTKVT--GVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVAT 176
Query: 162 SDSDIFLFGARTVYRDI--WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ V R+ +R V+ + + I L + I L +LLG DY
Sbjct: 177 EDMDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCST 236
Query: 220 VRGLGPESACQIVK---SVGD 237
++G+GP+ A ++K S+G+
Sbjct: 237 LKGIGPKKALGLIKKHRSIGN 257
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 116/261 (44%), Gaps = 28/261 (10%)
Query: 1 MGVKNLWDIL-ESCKKTL---PLHHLQNKRVCIDLSCWIVQLQNVNKSY-----RPQTDK 51
MG+K L +L E+ K+ + PL + +K+V ID S + Q +S +
Sbjct: 1 MGIKQLSKLLRENSKRGIRERPLVYYSSKKVAIDASMSMYQFLIAVRSGGATLGNEDSPT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQDD 101
L G F+R ++ L ++V DG P IK+ +R SEV D
Sbjct: 61 SHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVG--D 118
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K L +M R+ + + E K L +G+P EAEA CALL + G +
Sbjct: 119 KELMEMYDKRKTKVT--GVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVAT 176
Query: 162 SDSDIFLFGARTVYRDI--WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ V R+ +R V+ + + I L + I L +LLG DY
Sbjct: 177 EDMDALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCST 236
Query: 220 VRGLGPESACQIVK---SVGD 237
++G+GP+ A ++K S+G+
Sbjct: 237 LKGIGPKKALGLIKKHRSIGN 257
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 29/278 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR---- 55
MGV L ++ + ++ + L L + C+ L + Q + +P L R
Sbjct: 1 MGVTELGKLIGKEARREVKLEALAGR--CVALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 56 -----GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNL 104
GLF+R L+ ++V DG P KL+ R + + T++ +
Sbjct: 59 TSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGRR 118
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+++ + + M+++AK L +GVP ++ E EAQ A + C S D
Sbjct: 119 DEVAKYAKRAIFLTNEMVEDAKKLLTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQDY 178
Query: 165 DIFLFGARTVYRDIWLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGS 214
D LFG+ + R++ + V E+D + + L R LI LA+LLG+
Sbjct: 179 DSLLFGSPRLVRNLATSPKRKVGDEVVELSPEIIELDAVLKSLRLRSREQLIDLAILLGT 238
Query: 215 DYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
DY+ GV G+GP+ A +++ G L G++F
Sbjct: 239 DYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRGVTF 276
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI + K L H +++ ID S + Q +S Q +
Sbjct: 1 MGILGLAKLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R L+ ++V DG P +K +R E ++ N
Sbjct: 61 TSHLMGMFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + EAK L +G+P ++ EAEAQCA + + D
Sbjct: 121 EDIEKFNRRLVKVTKEHADEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + V + D + L + I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKT 252
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 17/236 (7%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQ-LQNVN-------KSYRPQTDKLFLRGLFHRLRALI 65
KK + L L+NK V ID + Q L ++ ++ + + + G+F++ ++
Sbjct: 11 KKEISLKDLKNKTVAIDSMNILYQFLSSIRLRDGSPLRNSKGEITSTY-NGIFYKNIYML 69
Query: 66 ALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFS 119
+ I+V DG P +K T R + ++ + NL+ M + +
Sbjct: 70 ENDITPIWVFDGKPPELKHKTREERKKVKEKAMEEYISAKEEGNLEDMQKYAKRINYLEP 129
Query: 120 CMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIW 179
+++ +K L +G+P + E EAQC+ + + S D D L+GA R+I
Sbjct: 130 KVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDVYAVVSQDYDALLYGAPRTVRNIT 189
Query: 180 LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 234
+ + E+D++ L ++LI +A+L+G+DY+ GV+G+GP+ A IVK+
Sbjct: 190 ASNKPLELI-ELDEVLGALNITLDNLIDMAILIGTDYNIGGVKGIGPKKALDIVKN 244
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 93/237 (39%), Gaps = 23/237 (9%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG 56
MG+ L D++ S + K + +D S + Q + P L G
Sbjct: 1 MGITKLADLIRSDAPDAISYKDITDYTGKVIALDTSIVVNQFRAATPLLSP------LTG 54
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
LF R + +FV DG P K + +R + +N N
Sbjct: 55 LFFRTLTFLEHGIKPVFVFDGKPPGEKKAVLEKRAQTAG------RNYS-------NWTG 101
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
S KE L LGVP ++ +AEA CA L E S D D FGA + R
Sbjct: 102 TASSQTKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVASEDMDTLPFGANILIR 161
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ + V+ Y + + KL G + L +LLG DY + + GLGP+ A +++
Sbjct: 162 QLNAKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDYCEKIPGLGPKRALTLIQ 218
>gi|448508200|ref|XP_003865895.1| Yen1 protein [Candida orthopsilosis Co 90-125]
gi|380350233|emb|CCG20454.1| Yen1 protein [Candida orthopsilosis Co 90-125]
Length = 616
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 109/261 (41%), Gaps = 51/261 (19%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LWD+L K + L L ++ RV ID +I + + S +T
Sbjct: 1 MGIPELWDVLRPGFDKRISLEELVDQYIKKLGRPPRVAIDAYMFIFHSDHSSISTDDKT- 59
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
++ ++ ++ ALI LN +I V DG S + T+ K LD L
Sbjct: 60 RVLIQNFMSKILALIGLNISVIVVFDGV--------------SKPDKTRTGKALDYEEEL 105
Query: 111 RR-------NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + +EF +K++ + + L+ EAEAQCA + + D ++D
Sbjct: 106 EKFQHMVYFSEPNEFVEQLKDSLKVN---KIEYLQAAGEAEAQCAYIQKLGIVDFVITND 162
Query: 164 SDIFLFGARTVYRDI----------------WLGERGYVVCYEMDDIERKLGFGRNSLIT 207
D +FGA V R+ L +R YV M IE G R L+
Sbjct: 163 VDSLIFGATQVLRNYSRFVEDIGHSPSKKSATLKQRYYVTPVNMKRIEEITGLNRARLVF 222
Query: 208 LALLLGSDYSQGVRGLGPESA 228
LA L G DYS GV+ +G +A
Sbjct: 223 LASLRGGDYSSGVKRMGITNA 243
>gi|389582194|dbj|GAB64749.1| flap exonuclease [Plasmodium cynomolgi strain B]
Length = 624
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG-------------ERGYVVC-YEMDDIERKLGFGRNSLITL 208
D+D +FG + + R++ +RGY++ ++ + + L N I
Sbjct: 181 DADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDF 240
Query: 209 ALLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 CILCGCDYCDTIKGIGSKTAYNLIK 265
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 104/212 (49%), Gaps = 24/212 (11%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK--------LSTYRRRLNSGSEVTQDDKNLD 105
L G+F+R L+ IFV DG +K L+ + + +++ ++NL
Sbjct: 58 LYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRGEENLK 117
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ S + + ++ + K L +G+P ++ E EAQ + + + DG S D D
Sbjct: 118 QYYSRINYITPQ---IVNDTKELLTYMGIPYVDAPSEGEAQASYMTRKD-ADGVISQDYD 173
Query: 166 IFLFGARTVYRDIWL-GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGS 214
LFGA+ + R+ + G R Y Y +D++ +K G ++ LI + +L+G+
Sbjct: 174 CLLFGAKKILRNFAIYGRRKVPRKNVYRTVYPEYVMLDEVLKKNGINQDQLIEIGILVGT 233
Query: 215 DYSQGVRGLGPESACQIVKSVGD-NVVLQRIA 245
D+++G++G+G + A ++K G+ VL +I
Sbjct: 234 DFNEGIKGIGAKKALALIKKEGNIKAVLNKIG 265
>gi|399217224|emb|CCF73911.1| unnamed protein product [Babesia microti strain RI]
Length = 895
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 134 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD 193
+P + EAEAQCA LN+E G S DSD +FGA V ++ + +R + Y+ +
Sbjct: 622 IPIIFAPSEAEAQCAQLNIEQSVYGVISDDSDTLVFGAIRVVKNFFNKQRN-LELYQSQN 680
Query: 194 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
I++ LG R L +ALL G DY+ GV+G+G +A +I+++
Sbjct: 681 IKQTLGLTREKLALIALLCGCDYTSGVKGIGIVNALEIIEA 721
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 114/263 (43%), Gaps = 26/263 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L IL E CKK + + + K+V ID+S +I Q N T
Sbjct: 1 MGIKQLSVILKEHCKKGVKEKQVGSFAFKKVAIDISNFIYQFLIAVRSGGNALGYGDTTT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDDK 102
L G+F+R ++ IFV DG P +KL ++R + + +D
Sbjct: 61 SHLVGMFYRTIRIVESGVTPIFVFDGKPPELKLYELKKRSDRRDKAEEQLKLAMEAEDKA 120
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
++K + + + E + + K L +G+P L EAEA CA L D +
Sbjct: 121 EIEKQTKRKIKVSEEH---VNDCKRLLKLMGIPYLTAPSEAEAFCAYLCKVKCVDAVATE 177
Query: 163 DSDIFLFGARTVYRDIWLG--ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGV 220
D D FGA + R ++ +V Y + +L I L +LLG DY++
Sbjct: 178 DMDALPFGAPVLLRGFSSAAVKKTHVTEYNLQTCLGELDMNLPEFIDLCILLGCDYTESG 237
Query: 221 RGLGPESACQIVKSVGDNVVLQR 243
+G+GP+ ++K+ VL+R
Sbjct: 238 KGIGPKKGVSLIKNTN---VLKR 257
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 31/287 (10%)
Query: 1 MGVKNL----WDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKL--- 52
MG++ L DI S K + + +++ ID S I Q +S Q T++
Sbjct: 1 MGIQGLAKLLGDIAPSGIKENEIKNYFGRKIAIDASMSIYQFLIAVRSDGSQLTNEAGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---------SGSEVTQDD 101
L GLF+R ++ ++V DG P +K +R S +E D
Sbjct: 61 TSHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQKALSKAEEAGDT 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+N+DK S + E + +E K L +G+P +E EAEAQCA L +
Sbjct: 121 ENIDKFSRRLVRVTKEHN---EECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKVYATGT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG + R + E + + + + ++ + G ++ I L +LLG DY
Sbjct: 178 EDMDALTFGTTVMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGCDYCDS 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
++G+GP+ + +++ R + L + +K+ E W +K
Sbjct: 238 IKGIGPKRSVDLIRQ-------HRSIDKILENIDTSKHPPPENWLYK 277
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 24/289 (8%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR- 55
MG+ L +++ KT+ L +L K + D S I Q ++ + LR
Sbjct: 1 MGIHKLMTLIQEKAPKAVKTIQLEYLTGKVIACDASMAIYQFLIATQTMKQGMGIGELRD 60
Query: 56 ----------GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL- 104
G+FHR + I+V DG P +K +R + + ++ KN
Sbjct: 61 SNGNLTGHLVGMFHRTIQFLESGIKPIWVFDGKPPDLKNRVLDQRKETKEKAVEEKKNRI 120
Query: 105 --DKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
M +R G M+++AK L +G P ++ EAEAQCA L L
Sbjct: 121 EEGDMEGAKRMAGRSVKVTWDMMRDAKKLLRLMGCPVIDAPGEAEAQCAHLVKLGLAFAT 180
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
S D D FG + + R + ++ ++ +++++ + I L +L G DY+
Sbjct: 181 ASEDMDSLTFGTKVLLRG-FNSKKEPIIQIDLEEVLEGFMMNHDQFIDLCILCGCDYTTS 239
Query: 220 VRGLGPESACQIVKSVGDNV--VLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ G+GP A Q + G + V++++ E K+ K E + FK
Sbjct: 240 ITGIGPIKAYQYLSEHGGIIENVIKKVEYENQKPWKKKKYHIPENFLFK 288
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 18/252 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI + K L H +++ ID S + Q +S Q +
Sbjct: 1 MGILGLAKLIADIAPNAIKEQELKHYFGRKIAIDASMCLYQFLIAVRSEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R L+ +++ DG P +K +R E ++ N
Sbjct: 61 TSHLMGMFYRTIRLVEQGIKPVYIFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEAGNA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R + +EAK L +G+P ++ EAEAQCA + + D
Sbjct: 121 EDIEKFNRRLVKVTKEHAEEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKVFATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG + R + E + V + D + L + I L ++LG DY+ ++G
Sbjct: 181 DALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGCDYTNSIKG 240
Query: 223 LGPESACQIVKS 234
+GP+ A +++K+
Sbjct: 241 VGPKRAIELIKT 252
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 29/263 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L L + V +D + Q + +P L
Sbjct: 1 MGVTELGKLIPQDARREVKLEQLSGRSVALD--AYNALYQFLASIRQPDGTPLMDSRGRV 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNL 104
L GLF+R L+ ++V DG P +K + R + + + +
Sbjct: 59 TSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRAEIESRRAAKEKAREQMERAAAEGRA 118
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ ++ + + M ++AKAL ++G+P ++ E EAQ A + G S D
Sbjct: 119 EDVAKYAKRVIYVTDQMAEDAKALLTAMGIPWVQAPSEGEAQAAYMAARGSVWGAGSQDY 178
Query: 165 DIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLGS 214
D LFGA + R++ + R V E+D + + L R L+ +A+LLG+
Sbjct: 179 DSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELDKVLKALKLKSREQLVDIAILLGT 238
Query: 215 DYS-QGVRGLGPESACQIVKSVG 236
DY+ GV G+GP+ A +I+ G
Sbjct: 239 DYNPDGVPGVGPQKALKIILEQG 261
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R +I ++V DG P +K S +R+ +E + D+ ++
Sbjct: 64 LLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRIERRAEAEKQRSDAVELGDEASV 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K + + E + +EAK L +G+P L+ EAEAQCA L S D
Sbjct: 124 NKFARRLVKVTKEQN---EEAKRLVTLMGIPVLDAPCEAEAQCAALARAGKVFATVSEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + EM + + + G I L +LLG DY +RG
Sbjct: 181 DALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMEQFIDLCILLGCDYVSTIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKKAFELIK 251
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 24/254 (9%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K L D+ + + H ++V ID S + Q ++ Q +
Sbjct: 1 MGILGLSKLLADVAPHAIREGEIKHYFGRKVAIDASMCLYQFLIAVRNESGQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L G F+R LI ++V DG P +K + +R E K LDK + L
Sbjct: 61 TSHLLGTFYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQERRDEA---QKALDKATEL 117
Query: 111 ---------RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
R + EAK L +GVP +E EAEAQCA + L +
Sbjct: 118 GDATEVDKFNRRLVKVTRHHADEAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLVYATAT 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ + R + E + E + + L + + + L +LLG DY++
Sbjct: 178 EDMDALTFGSNVLLRHLTFSEARKMPVQEIHLSKVLEGLELDQKAFVDLCILLGCDYTES 237
Query: 220 VRGLGPESACQIVK 233
+RG+GP+ A +++K
Sbjct: 238 IRGIGPKRAIELIK 251
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 145/331 (43%), Gaps = 31/331 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ + K L +L ++V ID S + Q L +V +S Q
Sbjct: 1 MGVKGLNKLIKEHSPNAYKEYQLKNLFGRKVAIDASMCLYQFLISVRQSDGQQLTNDDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R ++ N ++V DG P +K +RL E + L +
Sbjct: 61 TTSHLSGIFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKDALKDEGT 120
Query: 110 LRRNMGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ ++ E + +EAK L +G+P +E EAEAQCA L S D
Sbjct: 121 VEDHLKFEKRLVRVSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARGGKVYAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVR 221
D + + R + E + E+ E G N + L +LLG DY + +R
Sbjct: 181 MDTLCYEPPQLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIR 240
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRA--KNSKKEGWSFKCNNKEESLNQEIN 279
G+GP +A +++K G L++I + ++++ K + E W + +E LN E+
Sbjct: 241 GVGPVTAYKLIKEHGS---LEKI----VEWIEKGNTKYTVPENWPY-AEARELFLNPEVK 292
Query: 280 VNGTDHSLQRETP-FSQVIDAYSNPKCYSAD 309
+D SL+ + P +I+ K +S D
Sbjct: 293 -KASDISLKWKEPDVEGLIEYMVKGKGFSED 322
>gi|294909525|ref|XP_002777787.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
gi|239885749|gb|EER09582.1| hypothetical protein Pmar_PMAR008722 [Perkinsus marinus ATCC 50983]
Length = 937
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 77 GSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 136
G +P L + +L ++ +D N++K++ + + +F + ++ + L + G+P
Sbjct: 720 GQVPLSALDDLQSKLRVEEKLLED--NVNKLAKQQTEV--DFRALKEDIQLLLTAFGIPW 775
Query: 137 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIER 196
++ EAEAQC L L DG S DSD ++GA V R ++ + YV Y +
Sbjct: 776 VDAPCEAEAQCVALVRNGLADGVISDDSDTLMYGAEVVLRRLYF-DAMYVEMYSSSRMPD 834
Query: 197 KLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+L +++++LA+LLG DY+ GV G+G +A +I+++
Sbjct: 835 RL-RDHDAMVSLAMLLGCDYTPGVLGIGAVNALEIIQA 871
>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax Sal-1]
gi|317376189|sp|A5KAL1.1|FEN1_PLAVS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
Length = 623
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 32/265 (12%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG-------------ERGYVVC-YEMDDIERKLGFGRNSLITL 208
D+D +FG + + R++ +RGY++ ++ + + L N I
Sbjct: 181 DADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSMNEFIDF 240
Query: 209 ALLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 CILCGCDYCDTIKGIGSKTAYNLIK 265
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 27/260 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV ++ DILE K+ + L ++ V ID + Q ++ + P D
Sbjct: 1 MGV-DIGDILE--KRQVGFGDLAHRTVAIDGYNTLYQFLSIIRQRDGTPLKDSRGNITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-----DKNLDKMS 108
L G+ +R+ L +FV DG P K T +R S E +K L +
Sbjct: 58 LSGILYRMTNLFEAGIKPVFVFDGKPPDFKADTISQRKKSREEALTKWDEAKEKGLSEDV 117
Query: 109 SLRRNMGSEFSCMIKEAKALGLS-LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S+ +I E L +G+PC++ E EAQ A + + D S D D
Sbjct: 118 YKYAQASSKVDALIVEDSMQLLDYMGIPCVQAPSEGEAQAAYMVNKGDADYSASQDYDSL 177
Query: 168 LFGARTVYRDIWL-------GERGYV-VCYEMDDIERK---LGFGRNSLITLALLLGSDY 216
LFGA V R++ + G+ Y+ V E D+ + L R LI +AL +G+DY
Sbjct: 178 LFGAPRVIRNLTITGKRKLPGKNVYIDVEPESIDLMQNIKLLDIDRRQLIGIALCVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVG 236
++G+ +GP++A +++K G
Sbjct: 238 NKGLEKVGPKTALKLIKQYG 257
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 33/259 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L D++E + KT L + + + ID S + Q +V+ + Q +
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNLLKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEV-T 98
L+G+F+R LI+ I+V DG P +K +R L +EV T
Sbjct: 61 TTSHLQGMFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQAKRKEATDSLKEATEVGT 120
Query: 99 QDD--KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
+D K + S+ R E C+ K L L +GVP ++ EAEAQCA +
Sbjct: 121 SEDVQKFAKRTISVSRKQNEE--CI----KLLTL-MGVPVVKAPCEAEAQCAEIVKSGKA 173
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
S D D G+ + R ++ E + ++ +E+ + LG I L +LLG
Sbjct: 174 WATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLGC 233
Query: 215 DYSQGVRGLGPESACQIVK 233
DY ++G+GP+ A ++++
Sbjct: 234 DYCDSIKGIGPKRAFELIQ 252
>gi|395328084|gb|EJF60479.1| hypothetical protein DICSQDRAFT_162059 [Dichomitus squalens
LYAD-421 SS1]
Length = 1162
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 111/286 (38%), Gaps = 71/286 (24%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQ-------NK------RVCIDLSCWIVQL--------- 38
MGV LW+I+ ++T + HL NK RV ID S W+ +
Sbjct: 1 MGVSGLWEIINKSRQTRSVAHLAVVDGFEANKHGTRTLRVGIDASLWLQHVSTAKWLSTK 60
Query: 39 QNVNKSYRPQTDKLF----LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSG 94
+N N S + LR LF RL L L+FV DG
Sbjct: 61 KNPNASSAQGARNVGVNPELRTLFFRLAQWSKLPVSLLFVFDGR---------------- 104
Query: 95 SEVTQDDKNLDKMSSLRRNMGS-EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLE 153
+ L+K S GS E + KE L G+ E EAEA+ A LN
Sbjct: 105 ------GRPLEKRGSKMGKSGSHELAPKFKELIKL---FGMDWREAKGEAEAELAFLNQV 155
Query: 154 SLCDGCFSSDSDIFLFGARTVYRDIWL---GERG-------------YVVCYEMDDIERK 197
D + D D +FGA+TV ++ L G +G + Y DDI R
Sbjct: 156 GAIDAVVTDDIDCLIFGAQTVIKNFGLDLSGNKGNPPKNADGNTSKAHAHVYTADDIRRH 215
Query: 198 --LGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS-VGDNVV 240
+ R+ LI AL+ G DY G+ GP A + +S G+ +V
Sbjct: 216 PDVRLTRDGLILFALMSGGDYDTGIFRCGPAMAHAMARSGFGEQLV 261
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 28/297 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ L ++ + C + + ++N ++V ID S + Q ++ Q +
Sbjct: 1 MGILGLSKLIADICPQAIKESDIKNYFGRKVAIDASMCLYQFLIAVRAEGAQLTNVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL------NSGSEVTQDDKNL 104
L G+F+R L+ ++V DG P K +R E + N
Sbjct: 61 TSHLMGMFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQKALEKATEAGNE 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
M R + EAK L +GVP +E EAEAQCA L + D
Sbjct: 121 ADMDKFNRRLVKVTKEHANEAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNS--LITLALLLGSDYSQGVRG 222
D FG+ + R + E + E + GFG S I L +LLG DY G+RG
Sbjct: 181 DALTFGSGILLRHLTFSEARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGCDYCDGIRG 240
Query: 223 LGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI 278
+GP+ A +++ S D +L++I R K + E W+++ +E +N E+
Sbjct: 241 IGPKRATELMNSYKDIETILEKI--------DRKKYTVPEDWNYQI-ARELFVNPEV 288
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K L L +L ++V ID I Q + + P D L GLF+R L+
Sbjct: 11 RKELELENLNGRKVAIDAFNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E + +L++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKKKELEKRAEAREEAQEKWEEALARGDLEEAKKYAQRASKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++ +
Sbjct: 131 LIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGHVWASASQDYDSLLFGTPRLVRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G + E ++++ ++L R L+ LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGKRKLPGKDIYVEVKPELIVLEEVLKELKITREKLVELAILVGTDYNPGGIKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IVK D
Sbjct: 251 LEIVKYSKD 259
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L SC K +++ +D S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIV--VGRTGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F+R L+ ++V DG P +K +R + ++ T D
Sbjct: 59 GEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEA 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + + + + K L +GVP +E EAEAQCA L G
Sbjct: 119 GNKEDIEKYSKRTVKVTKQHN---DDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYG 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + + V+ +E+ I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G ++A ++++ G
Sbjct: 236 CDSIRGIGGQTALKLIRQHG 255
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 24/254 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++ E+C + ++N ++V ID S +++ +++ + T +
Sbjct: 1 MGIKHLYQVIDENCPGAVKTGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L G+F+R ++ +FV DG+ P +K +R SE T
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLFVFDGAPPKLKSGELAKRFQRKSEAQEAHEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + E + L +G+P + EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHNA---ECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E+ E +D + L R I L +LLG DY
Sbjct: 178 EDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDKVLEGLEMEREQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVK 233
++G+GP +A ++V+
Sbjct: 238 IKGVGPSTALKLVR 251
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 25/284 (8%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ NL D+ C K + ++V ID S + Q +S Q
Sbjct: 1 MGILNLTKFLADVAPHCIKETDIKSYFGRKVAIDASMSLYQFLIAVRSEGAQLTTADGEP 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-DKNLD---- 105
L G F+R L+ ++V DG P +K +R+ +E + DK ++
Sbjct: 61 TSHLVGTFYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQKALDKAMEAGDQ 120
Query: 106 -KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++ R + EAK L +GVP +E EAEAQCA + + D
Sbjct: 121 AEVDKFNRRLVKVTRHHADEAKELLRLMGVPYIEAPCEAEAQCAAMVKAGKIYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ V R + E + E + + ++L + I +L+G DY+ +RG
Sbjct: 181 DALTFGSDIVLRHLTFSEARKMPIQEIHLKIVLQELNLSQTEFIDFCILMGCDYTDSIRG 240
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+GP+ + +++K+ R + L + ++K E W+++
Sbjct: 241 IGPKKSIELIKN-------HRSIEKILENIDKSKYPPPEDWNYE 277
>gi|429964650|gb|ELA46648.1| hypothetical protein VCUG_01874 [Vavraia culicis 'floridensis']
Length = 720
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 156 CDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
D + D+D+FLFGA +Y+D + G + Y M +I+ KL R LI L++ +G+D
Sbjct: 575 VDAVITEDNDVFLFGASRIYKDYFRGPK----LYTMQNIKNKLNLEREDLIKLSVFMGND 630
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRI 244
Y+ G+RG+GP+ A +I+K QRI
Sbjct: 631 YTVGIRGIGPKKALEILKCESKTSYDQRI 659
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 1 MGVKNLWDILESCKKT-LPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGVK LW +LE C P +N+R+ ID S W+ + +NV PQT+ ++
Sbjct: 1 MGVKGLWKLLEECHTADTP----KNQRLAIDASIWLYKYKNV-----PQTNVIY--SFVK 49
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ L FV D P K+ T +R
Sbjct: 50 RVVGLLYHQNTLFFVFDSKAPVEKIKTIAKR 80
>gi|171690042|ref|XP_001909953.1| hypothetical protein [Podospora anserina S mat+]
gi|170944976|emb|CAP71087.1| unnamed protein product [Podospora anserina S mat+]
Length = 884
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 119/295 (40%), Gaps = 61/295 (20%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLS 85
R+ ID+S W Q+Q P +R LF RL L++L +FV DG
Sbjct: 36 RLAIDISIWQFQIQAARGGSNPA-----IRTLFFRLVRLLSLAIQPLFVFDGP----NKP 86
Query: 86 TYRRRLNSGSEVTQDDKNLDKM--SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 143
++R +G + M +S+ + M F I +A EA
Sbjct: 87 AFKRNKRAGGP-----RGAGHMVAASMAKRMIKLFGFAIHDAPG--------------EA 127
Query: 144 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-RG----YVVCYEMDDIER-K 197
EA+CA L E + D S D D +FG R W E +G ++ Y+ ++I + +
Sbjct: 128 EAECAFLQREGVVDAVLSEDVDTIMFGCGKTLRS-WTAEGKGNVPTHITLYDAEEIAKGE 186
Query: 198 LGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAK 256
G R ++ +AL+ G DY +GV G G + AC+ ++ F K+
Sbjct: 187 SGLDREGMVLVALMSGGDYLPEGVPGCGIKVACEAARA---------------GFGKQLC 231
Query: 257 NSKKEGWSFKCNNKEESLNQEINVNGTDH--------SLQRETPFSQVIDAYSNP 303
KK W E L E + N + + ++ + P +++ Y++P
Sbjct: 232 GIKKADWKEGFQAWRERLRHEWDTNESGYFRTKHKGLAIPEDFPDLEILRYYTHP 286
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 119/265 (44%), Gaps = 31/265 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------- 52
MGV N+ DI+ + ++ + L L+ + +D + Q + + +P L
Sbjct: 1 MGV-NIRDIIPDQARREVDLKALKGYVIALDGYNMLYQFLSAIR--QPDGTPLKDSQGRV 57
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GLF+R L+ ++V DG P +K R+ E + + S+
Sbjct: 58 TSHLSGLFYRTINLVEEGLKPVYVFDGKPPEMKRKEIEERVARKKEAAEKYAKAKESGSI 117
Query: 111 RR-----NMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
SE S M+ EAK L +G+P ++ + EAQ A L + S D
Sbjct: 118 EEARKYAQATSELSSDMVSEAKRLLDYMGIPWVQAPADGEAQAAHLAQKGDAWAAGSQDY 177
Query: 165 DIFLFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLG 213
D LFGA + R++ + G+R YV V E+ D+ + LG R LI L +L+G
Sbjct: 178 DSLLFGAPRLVRNLAITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQLILLGILVG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVGD 237
+D+ G++G GP++A VK V D
Sbjct: 238 TDFDPDGIKGYGPKTALNFVKGVKD 262
>gi|302677424|ref|XP_003028395.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
gi|300102083|gb|EFI93492.1| hypothetical protein SCHCODRAFT_83281 [Schizophyllum commune H4-8]
Length = 911
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 59/247 (23%)
Query: 1 MGVKNLWDILE--SCKKT---LPL--------HHLQNKRVCIDLSCWIVQLQNVNKSYRP 47
MG+ LWD+L+ + K++ LP+ +L+ R+ ID S W + + P
Sbjct: 1 MGIAGLWDVLKPAAVKRSMLELPVSEGFEKNPKNLRGFRIGIDASIWFFHAEYGKEGENP 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ LR LF R L+ +FV DG K +++R G +++++
Sbjct: 61 E-----LRTLFFRCATLMHAPWLPLFVFDGP----KRPSWKR----GKRISKNNH----- 102
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+I K + + G EAEA+ A LN + DG S DSD F
Sbjct: 103 ------------ALINGMKGIVEAFGYEWRMAPGEAEAELAYLNRIGIIDGVLSDDSDNF 150
Query: 168 LFGARTVYRDI----------------WLGERGYVVCYEMDDIERKLGFGRNSLITLALL 211
LFGA TV R+ ++ + + Y + DI +L R LI + L+
Sbjct: 151 LFGALTVIRNPSNNLSANRAKPVLNSEGRDDKQHTMVYRLADITSQLELTRGGLILIGLM 210
Query: 212 LGSDYSQ 218
G DY Q
Sbjct: 211 AGGDYEQ 217
>gi|358367996|dbj|GAA84614.1| Rad2-like endonuclease [Aspergillus kawachii IFO 4308]
Length = 875
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 147/366 (40%), Gaps = 68/366 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLIHAIGAGERISLSRLAITHLERTARPIRIAVDISIWLFQVQAGRGGRNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF+RL ++AL +FV DG + P K G V+
Sbjct: 57 -LRTLFYRLLKILALPIHPLFVYDGKNKPPFK---------RGKAVSS------------ 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ GS + +I+ +K L P E EAEA+CA L + D ++D D +FG+
Sbjct: 95 RSYGS--APIIRLSKILVDLFKFPRHEAPGEAEAECARLQRAGVVDAVMTNDVDALMFGS 152
Query: 172 RTVYRDI------WLGERGYVVCYEMDDI--ERKLGFGRNSLITLALLLGSDY-SQGVRG 222
G +V CY M+ + R +I A+L G DY GV
Sbjct: 153 TFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSSVKLDRAGMILFAMLSGGDYLPSGVPK 212
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
G + A +I K+ +L+ + S+G R + +E ++ E Q
Sbjct: 213 CGSKLAGEIAKAGFGADLLEILESDGAELDARLSD-WRERLQYELEENESGYFQ------ 265
Query: 283 TDHSLQR---ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHA--------RLHQVC 331
T H + R P ++ Y+NP S+ SE R L QH +A L +
Sbjct: 266 TKHKVVRIPDTFPDRTILSYYANP-VVSSTSEI--RAL-QHNLSNAWDKDIDVVELRRFA 321
Query: 332 AQFFQW 337
A F+W
Sbjct: 322 ADAFEW 327
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 30/281 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V +D + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGS------EVTQDDKNLDKM 107
L GL +R +L+ +F+ DG P +K T RR E + + +L+
Sbjct: 58 LSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAA 117
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ +++++K L +G+P ++ E EAQ A + L+ D S D D F
Sbjct: 118 YKYAQASSRVDQEIVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDYDSF 177
Query: 168 LFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA V R++ + G+ YV E+++ R L R+ LI +A+ +G+DY
Sbjct: 178 LFGAPKVVRNMAVTGKRKLPGKNVYVDVELEVIELEETLRALEINRDQLIDIAICVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQR--IASEGLSFVKR 254
++G+ +GP++A +++K GD + VL+ + EGL +++
Sbjct: 238 NKGLEKVGPKTALKLIKKHGDIHAVLREKDMEIEGLDRIRK 278
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + K
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHA---K 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L + S +K + E W++K
Sbjct: 260 LDNLDS--------SKYTVPENWNYK 277
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 25/255 (9%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT------- 49
MG+KNL +L C K + + ++V +D S I Q V QT
Sbjct: 1 MGIKNLTKLLGDHAPGCCKEQKVENYFGRKVAVDASMHIYQFLVVVGRTGDQTLTSESGD 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------D 100
L+G+F R ++ + ++V DG PA+K RR+ + T
Sbjct: 61 VTSHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRGDATDLLTEAKETGA 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
D +++K S + + + +E + L +GVP +E EAEAQCA + E L G
Sbjct: 121 DADIEKYSKRTVRVTPQHN---EECRRLLRLMGVPVVEAPSEAEAQCAQMCKEGLVYGIA 177
Query: 161 SSDSDIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
S D D F + R++ + V Y+ D + L + + L +L G DY
Sbjct: 178 SEDMDSLTFATPKLIRNLMKPQTQNVPINEYDYDKVLEGLNLTSDQFVDLCILCGCDYCG 237
Query: 219 GVRGLGPESACQIVK 233
++G+G +A ++++
Sbjct: 238 TIKGIGGVTALKLIQ 252
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + K
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHA---K 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L + S +K + E W++K
Sbjct: 260 LDNLDS--------SKYTVPENWNYK 277
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 29/278 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR---- 55
MGV L ++ + ++ L L + C+ L + Q + +P L R
Sbjct: 1 MGVTELGKLIGKEARREAKLEALAGR--CVALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 56 -----GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNL 104
GLF+R L+ ++V DG P KL+ R + + T++ +
Sbjct: 59 TSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRRAKEKATEELVRAIKEGRR 118
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+++ + + M+++AK L +GVP ++ E EAQ A + C S D
Sbjct: 119 DEVAKYAKRAIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQDY 178
Query: 165 DIFLFGARTVYRDIWLGERGYVV---------CYEMDDIERKLGF-GRNSLITLALLLGS 214
D LFG+ + R++ + V E+D + + L R LI LA+LLG+
Sbjct: 179 DSLLFGSPRLVRNLAASPKRKVGDEVVELSPEIIELDTVLKSLRLRSREQLIDLAILLGT 238
Query: 215 DYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
DY+ GV G+GP+ A +++ G L G++F
Sbjct: 239 DYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRGVTF 276
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + K
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHA---K 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L + S +K + E W++K
Sbjct: 260 LDNLDS--------SKYTVPENWNYK 277
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 31/279 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ ++ + L +L + CI L + Q + +P L
Sbjct: 1 MGVTELGKLIGREARREIKLENLAGR--CIALDAYNALYQFLASIRQPDGTPLMDRQGRV 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS-----EVTQDDKN 103
L GLF+R L+ ++V DG P KL+ RRR+ + + ++ K
Sbjct: 59 TSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKAIREGKR 118
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
D ++R + + M+++AK L +GVP ++ E EAQ A + C S D
Sbjct: 119 DDVAKYMKRVIFLT-NEMVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 164 SDIFLFGARTVYRDIWLGER---------GYVVCYEMDDIERKLGF-GRNSLITLALLLG 213
D LFG+ + R++ + + E+D + + L GR LI +A+LLG
Sbjct: 178 YDSLLFGSPRLVRNLAVSPKRRSGEEVVEVSPEVVELDSVLKALKLKGREQLIDVAILLG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+DY+ GV G+GP+ A ++V G + G+SF
Sbjct: 238 TDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTVLRGVSF 276
>gi|389634309|ref|XP_003714807.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|351647140|gb|EHA55000.1| flap structure-specific endonuclease [Magnaporthe oryzae 70-15]
gi|440465671|gb|ELQ34981.1| flap structure-specific endonuclease [Magnaporthe oryzae Y34]
gi|440490374|gb|ELQ69936.1| flap structure-specific endonuclease [Magnaporthe oryzae P131]
Length = 932
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 45/251 (17%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ + ++ L + L+ KR + ID+S W Q+Q T
Sbjct: 1 MGIKGIYPEIGPGERISLCKLAVQTLEEKRRPLRIAIDISIWQFQIQAARGGANAPT--- 57
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
R LF+RL L+ + IFV DG + PA K + RR G N ++
Sbjct: 58 --RTLFYRLARLLGHSIQPIFVFDGPNKPAFKRN--RRSTTRGGATGDVVSN-----AMA 108
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ M F EA EAEA+CALL + D S D D +FG
Sbjct: 109 KRMIRLFGFQFHEAPG--------------EAEAECALLQRRGIVDAVLSEDVDTIMFGC 154
Query: 172 RTVYRDIWLGE--RG-----YVVCYEMDDIE-RKLGFGRNSLITLALLLGSDY-SQGVRG 222
R+ W E RG +V Y+ I+ + G R ++ +AL+ G DY QGV G
Sbjct: 155 TRTLRN-WSSEGVRGSKEPTHVSMYDSAAIKAQHSGLDREGMVLVALMSGGDYIPQGVPG 213
Query: 223 LGPESACQIVK 233
G + AC+ +
Sbjct: 214 CGVKVACEAAR 224
>gi|402588539|gb|EJW82472.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 604
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P + EAEAQC L L G S DSD++LFGA VY++++ ++ + Y M+
Sbjct: 482 GIPFVIAPGEAEAQCCELEKLGLVQGIISDDSDVWLFGAAVVYKNMF-NQKRRLQMYSME 540
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
I +LG R I +ALL G DY+ G+ G+G +A +++
Sbjct: 541 SIRNQLGLSRWEAIQIALLSGGDYTNGLEGVGVVAALELI 580
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG++ LW +LE + + L L+ KR+ ID+S W+ Q ++ L + R
Sbjct: 6 MGIQGLWQVLEPVAEPVTLESLEGKRLAIDISIWLHQAAYGYSEHQLNAKYPHLSLVLRR 65
Query: 61 LRALIALNCGLIFVSDG-SIPAIKLSTYRRR 90
L L+ IFV DG ++P K R R
Sbjct: 66 LAKLLFYKIRPIFVFDGPNVPIFKKKLLRDR 96
>gi|388582448|gb|EIM22753.1| hypothetical protein WALSEDRAFT_44472 [Wallemia sebi CBS 633.66]
Length = 811
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 150/391 (38%), Gaps = 96/391 (24%)
Query: 1 MGVKNLWDILE--SCKKTLP--------LHH--LQNKRVCIDLSCWIVQLQNVNKSYRPQ 48
MGV LWD+L +C +L +H + RV +D S W++ Q P
Sbjct: 1 MGVPGLWDLLRPAACSHSLSRLAVDAFIANHRGYRGLRVGVDASIWLIHSQTAPGGLNPA 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
LR LF +L L++L +FV DG R ++ G +V
Sbjct: 61 -----LRTLFFKLCNLLSLPILPLFVFDGP--------KRPKMKRGKQV----------- 96
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
R IK A G EAEA+ A L+ + D S D D L
Sbjct: 97 --RGAQPRGLKDFIKLIDAFGFEYH----NAPGEAEAELARLSKAGIIDVVLSDDVDSLL 150
Query: 169 FGARTVYRDIWLGERG----------------------YVVCYEMDDIER--KLGFGRNS 204
FG + R+ LG G + Y +DDI R + G N
Sbjct: 151 FGGVKILRNWSLGLSGNSKSQADLHNINNDDSLAADDHRIETYTLDDICRHDETGVTPNG 210
Query: 205 LITLALLLGSDYS-QGVRGLGPESACQIVKS-VGDNVVLQRIASEGLSFVKRAKNSKKEG 262
LI +ALL G DY GV+ G ++A + ++ GD ++ EG+ ++R +
Sbjct: 211 LILVALLAGGDYHPAGVQSCGTKNAFGLARAGFGDKLI------EGVRTLQRDQLD---- 260
Query: 263 WSFKCNNKEESLNQEINVNGTDH----------SLQRETPFSQVIDAYSNP------KCY 306
SF N +EE L +E+ N + + S+ P V++ Y NP C
Sbjct: 261 -SFLTNWREE-LKEELANNSSGYLSSKRPSVATSITTSFPDLDVLERYINPLTTESIDCE 318
Query: 307 SADSEAVHRVLAQHLFQHARLHQVCAQFFQW 337
E+++ + A L + C ++F+W
Sbjct: 319 QKYKESLNNIKYNKEPNIAELARFCEEYFEW 349
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 117/264 (44%), Gaps = 27/264 (10%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ S K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKN 103
L G+F+R ++ N ++V DG P +K +RL E + D+
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++++ + + +EAK L +G+PC++ EAEAQCA L S D
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQ 218
D + + R + E + +D IE K L + I L +LLG DY +
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKM---PIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVV 240
++G+G +A +++K G DN+V
Sbjct: 238 SIKGIGQATAFKLIKEHGSLDNIV 261
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + K
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAGIEKFNRRLVRVTKEHA---K 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCESIKGIGPKRAIELINTYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L + S +K + E W++K
Sbjct: 260 LDNLDS--------SKYTVPENWNYK 277
>gi|313217057|emb|CBY38243.1| unnamed protein product [Oikopleura dioica]
gi|313224508|emb|CBY20298.1| unnamed protein product [Oikopleura dioica]
Length = 538
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L K+SS + + K+A + G EAEAQCA + ++ G + D
Sbjct: 292 LQKLSSALKITSVPSQQLYKDAAEMLTLFGCGVFFAPGEAEAQCAEFEMTNITQGTITDD 351
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223
D FLFG R V + + LG V Y++ + E F R LI LA L GSDY G++ +
Sbjct: 352 GDTFLFGGRIVIKGLTLG-NMVPVKYDVQETE----FSREFLIALAQLTGSDYCNGIKSV 406
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
G ++A +I++ D +R L+ N+ + W N +SL N
Sbjct: 407 GSKTAIKILEEFDD----RRSEDPHLTL-----NTFSKWW----NTHHKSLTTGTNGIPL 453
Query: 284 DHSLQR-----ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWP 338
L++ + P + AY +P + + R L R+ Q A+ +W
Sbjct: 454 RAKLKKLNIDADFPSDRSRHAYLHPNVEKLKDKKI-RFTVPDL---NRIRQYAARKLEWQ 509
Query: 339 PEKTDEYILPKIAERDLRR 357
+ D++I+P + E+ +R
Sbjct: 510 EQAIDQHIIPLLPEKMEKR 528
>gi|116754923|ref|YP_844041.1| flap endonuclease-1 [Methanosaeta thermophila PT]
gi|121693591|sp|A0B9M7.1|FEN_METTP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116666374|gb|ABK15401.1| flap endonuclease 1 [Methanosaeta thermophila PT]
Length = 336
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV +L DIL KK + L +L + +D + Q ++ + +P L
Sbjct: 1 MGV-DLGDIL--SKKKISLENLSGCWIAVDGFNTLYQFLSIIR--QPDGTPLMDASGRVT 55
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSS 109
L GL +R+ LI + + FV DG+ P +K T R ++ +E+ + + S
Sbjct: 56 SHLSGLLYRMTNLIEVGIRVAFVFDGTPPELKAGTLAARAQMKEAAEIQLQEAIATGVDS 115
Query: 110 LRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R + S ++ ++ L ++G+P ++ E EAQ A + + D S D D
Sbjct: 116 FRYAQATARINSEILHDSIRLLDAMGIPYVQAPSEGEAQAAFMAIRGDVDYVASQDYDSL 175
Query: 168 LFGARTVYRDIWLGERG-------YV-VCYEMDDIER---KLGFGRNSLITLALLLGSDY 216
LFGA V R++ + R Y+ V E+ +E +LG R LI + ++ G+DY
Sbjct: 176 LFGAPRVVRNLAITGRRKMPRKNIYIDVPPEVIILEEELTRLGISREQLIDIGIMCGTDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
++G+ +GP+ A ++++ G
Sbjct: 236 NRGLPKVGPKRALKLIREHG 255
>gi|448439982|ref|ZP_21588230.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
gi|445690499|gb|ELZ42709.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
Length = 325
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L RG ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSRGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDGLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 114/289 (39%), Gaps = 24/289 (8%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR- 55
MG+ L +++ KT+ L L K V D S I Q +S + +R
Sbjct: 1 MGIHKLMTLIQEKAPKAVKTINLDLLTGKTVACDASMAIYQFLIATQSMKQGMGISEMRD 60
Query: 56 ----------GLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQDDK 102
GLFHR + I+V DG P +K L + E Q
Sbjct: 61 SEGNLTGHLVGLFHRTIQFMENGVKPIWVFDGKPPELKSYVLDQRKENKEKAEETKQTMI 120
Query: 103 NLDKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
+ + +R G M+++AK L +G P +E EAEAQCA++ L
Sbjct: 121 DAGDLEGAKRMAGRSIRVTPEMMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYAT 180
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
S D D FG + R + ++ ++ ++ + I L +L G DY+
Sbjct: 181 ASEDMDSLTFGTNVLLRG-FNSKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDYTTN 239
Query: 220 VRGLGPESACQIVKSVGDNV--VLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ G+GP A + + G + V+ RI E K+ K + E + +K
Sbjct: 240 IPGVGPVKAFKFISEEGGTIENVISRIEKENDDPKKKKKYTIPETFYYK 288
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR--------LNSGSEVTQDDKNLD 105
L G+F+R L+ N ++V DG +K T R R + + +D
Sbjct: 58 LSGIFYRTSNLLENNIKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASNDD--A 115
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
K+ SL + ++ E+K L +G+P ++ E EAQ + + L+ + S D D
Sbjct: 116 KIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDVNAVVSQDYD 175
Query: 166 IFLFGAR------TVY--RDIWLGERGYVVCYEMDDIERKL---GFGRNSLITLALLLGS 214
LFGA+ TVY R I R V E+ D+ L G R LI + +L G+
Sbjct: 176 CLLFGAKRILRNFTVYGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQLIYIGILTGT 235
Query: 215 DYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGL 249
D++ GV+G+G ++A ++K D + +I + G+
Sbjct: 236 DFNPGVKGIGAKTALSLIKKYNDIYSVIKIKNIGI 270
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 117/264 (44%), Gaps = 27/264 (10%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ S K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKN 103
L G+F+R ++ N ++V DG P +K +RL E + D+
Sbjct: 61 TTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKTALGDEGT 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++++ + + +EAK L +G+PC++ EAEAQCA L S D
Sbjct: 121 VEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKVYAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQ 218
D + + R + E + +D IE K L + I L +LLG DY +
Sbjct: 181 MDTLCYEPPFLLRHLTFSEARKM---PIDQIEYKDAIAGLDMTKEQFIDLCILLGCDYCE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVV 240
++G+G +A +++K G DN+V
Sbjct: 238 SIKGIGQATAFKLIKEHGSLDNIV 261
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 24/258 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKL-----FL 54
MG+ L +++E + L L + + ID + Q L + K RP D L
Sbjct: 1 MGLAELRELIEPEETDL--RALAGREIAIDAFNALYQFLTTIMKDGRPLMDSRGRITSHL 58
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNS---GSEVTQDDKNLDKMSSLR 111
GL +R L+ ++V DG P +K T RR E + K ++
Sbjct: 59 NGLLYRTVNLVEEGIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLRRAKTKEEREKYA 118
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R + ++++AK L +G+P ++ E EAQCA + S D D LFG+
Sbjct: 119 RQVARLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGS 178
Query: 172 RTVYRDIWL-GER-----GYVV-----CYEMDDIERKLGF-GRNSLITLALLLGSDYS-Q 218
+ R+I + G+R G ++ ++D+ +LG R L+ LA+LLG+DY+
Sbjct: 179 PRLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLGTDYNPD 238
Query: 219 GVRGLGPESACQIVKSVG 236
GV G+GP+ A Q+++ G
Sbjct: 239 GVPGIGPKRALQLIRKYG 256
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 152/332 (45%), Gaps = 31/332 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++ E+ + ++N ++V ID S +++ +++ + T +
Sbjct: 1 MGIKHLYQVIAENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQDDK----- 102
L G+F+R ++ ++V DG+ P +K L+ R + +E ++ K
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHEEAKETGTA 120
Query: 103 -NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+++K S + E + E K L +G+P ++ EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHNA---ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F A + R + E+ E ++ LG RN I L +LLG DY +
Sbjct: 178 EDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGCDYLEP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEI- 278
+ +GP +A ++++ D+ L+++ E + + K E W ++ + +E LN ++
Sbjct: 238 IPKVGPNTALKLIR---DHGTLEKVV-ESIEKDPKQKYVIPESWPYQ-DARELFLNPDVR 292
Query: 279 NVNGTDHSLQRETP-FSQVIDAYSNPKCYSAD 309
+ N + + E P ++D K ++ D
Sbjct: 293 DANDPECDFKWEAPDIEGLVDFLVKDKGFNED 324
>gi|426193684|gb|EKV43617.1| hypothetical protein AGABI2DRAFT_48292, partial [Agaricus bisporus
var. bisporus H97]
Length = 528
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 146/383 (38%), Gaps = 90/383 (23%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK-------------RVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD+L+ KT L L K R+ ID S W + Y
Sbjct: 1 MGVAGLWDVLKPAAKTRSLTELAVKEGFQANPKGLRGYRIGIDASIWFFHAE-----YGK 55
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRR--RLNSGSEVTQDDKNLD 105
+ + LR LF R L +FV DG K ++R R+N + +K +
Sbjct: 56 EGENPVLRTLFFRCATLTKAPFLPLFVFDGP----KRPDFKRGKRINKST-----NKLIT 106
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
M ++ G E+ A G EAEA+ A LN + DG S D D
Sbjct: 107 GMKTIVEAFGFEWRT------APG------------EAEAELAYLNRIGVIDGILSDDVD 148
Query: 166 IFLFGARTVYRDI----------------WLGERGYVVCYEMDDIERK--LGFGRNSLIT 207
FLFGA TV R+ ++ + + + DI+ + R LI
Sbjct: 149 NFLFGALTVIRNQSNNLSGNKSNPVVNSEGKDDKNHTRVFHLQDIQNHEDIQLSRGGLIL 208
Query: 208 LALLLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ LL G DY +G+R G +A + + +GD + F K S++E F
Sbjct: 209 IGLLSGGDYEEGLRKCGMVTAHSLARCGLGDTL-----------FEAANKLSREELVDFL 257
Query: 267 CNNKEESLNQEINVNGTDHSLQRETPFSQ-VIDAYSNPKCYSADSEAVHRVLAQHLFQH- 324
+EE L QE+ N + R+ S+ V D + N + ++ + H ++
Sbjct: 258 HTWREE-LRQELKTNSKGYLKNRQIALSKSVPDTFPNIDVLLSYAQPITSESLGHAGRNP 316
Query: 325 ----------ARLHQVCAQFFQW 337
A L C +F+W
Sbjct: 317 IITWTKEPNFALLAAACELYFEW 339
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 17/198 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---SGSEVTQDDKNLDKMSSL 110
L GLF+R LIA L++V DG +K T R++ E Q + +
Sbjct: 61 LSGLFYRSIDLIAKGVNLVYVFDGMPSTLKKKTIEARISRREKAYEAWQKAVAEGQAEEV 120
Query: 111 RRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R+ + ++ AK L +G+ + E EAQ + + + + S D D
Sbjct: 121 RKFAQASTRITKEIVSSAKELLGYMGIWYINAPSEGEAQASYMCSKGIAYAAASQDYDTL 180
Query: 168 LFGARTVYRDIWL-------GERGYV-VCYEMDDIER---KLGFGRNSLITLALLLGSDY 216
LFG++ V R++ L G+ +V V EM D++ LG R LI + +LLG+D+
Sbjct: 181 LFGSKKVVRNLTLSGRRKLPGKNVFVNVNPEMVDLDATLGSLGITRQKLIWIGILLGTDF 240
Query: 217 SQGVRGLGPESACQIVKS 234
+ GV+G+GP++A + VKS
Sbjct: 241 NDGVKGVGPKTALKAVKS 258
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|268571629|ref|XP_002641105.1| Hypothetical protein CBG17486 [Caenorhabditis briggsae]
Length = 437
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 37/294 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
M + +W+ + + + L+ K + ID W+ + +++ QT +L F R
Sbjct: 1 MTINGIWEWANHVSQKVAVETLRGKVLAIDGHIWLYESLKGCETHHQQTPNSYLITFFTR 60
Query: 61 LRALIALNCGLIFVSDG---SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSE 117
++ L L I V D S PA + G++ Q++ K S ++ +
Sbjct: 61 IQRLRELKITPIVVFDSISTSSPA----------HEGAD--QEEFVPRKRRSFGDSLFTN 108
Query: 118 FSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRD 177
+ + + L +GV + + EAQCA L + GC ++D D FLFG + +YR
Sbjct: 109 LADPVYKTNMLLSQMGVKVIISPGDGEAQCARLEELEVTSGCITTDFDYFLFGGKNLYRF 168
Query: 178 IWLGERGYVVCYEM-------DDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESAC 229
+ + +++ +IE+K+ R LI+ A+LLG DY Q GV+ +G +
Sbjct: 169 DFTASGNVALLHDVVHLSLGRMNIEKKV--DRPHLISTAILLGCDYFQRGVQNIGIVTVF 226
Query: 230 QIVKSVGD--------NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN 275
I+ GD +V+L R S+VK ++ E S K + + N
Sbjct: 227 DILAEFGDDGNEDVDPHVILDRF----YSYVKEEIPARSEDSSRKLRLRRKKFN 276
>gi|302900804|ref|XP_003048331.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
gi|256729264|gb|EEU42618.1| hypothetical protein NECHADRAFT_84053 [Nectria haematococca mpVI
77-13-4]
Length = 803
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 103/250 (41%), Gaps = 49/250 (19%)
Query: 1 MGVKNLW-DILESCKKTLP-------LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+K ++ +I E + L +H + R+ ID++ W Q Q P
Sbjct: 1 MGIKGIYQEIGEGRRVALAKLAADTLVHEGRPFRIAIDIAIWQFQSQVAQGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
+R LF+RL L+A +FV DG P IK R SG D +S+
Sbjct: 57 -IRTLFYRLVRLLAAPIKPVFVFDGPYKPKIK-----RNKRSGRG--------DALSNA- 101
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+AK L G P + EAEA+CALL + D S D D +FG
Sbjct: 102 ------------QAKRLIHLFGFPIHDAPGEAEAECALLQQHGIVDAVMSEDVDTLMFGC 149
Query: 172 RTVYRDIWLGERGYVVCYE----MDDIERKL---GFGRNSLITLALLLGSDYSQ-GVRGL 223
+ R W + C +D E +L G R ++ +AL+ G DY G+ G
Sbjct: 150 TKMLRQ-WSPQSKRQTCPTHVSLIDKEEMRLVEQGLDREGMVLVALMSGGDYDPVGIAGC 208
Query: 224 GPESACQIVK 233
GP+ A + K
Sbjct: 209 GPKVAVEAAK 218
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L SC K +++ +D S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIV--VGRTGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F+R L+ ++V DG P +K +R + ++ T D
Sbjct: 59 GEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEA 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + + + + K L +GVP +E EAEAQCA L G
Sbjct: 119 GNKEDIEKYSKRTVKVTKQHN---DDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYG 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + + V+ +E+ I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G ++A ++++ G
Sbjct: 236 CDSIRGIGGQTALKLIRQHG 255
>gi|315055715|ref|XP_003177232.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
gi|311339078|gb|EFQ98280.1| hypothetical protein MGYG_01313 [Arthroderma gypseum CBS 118893]
Length = 765
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L D L ++ + HLQ R + +D+S W+ Q+Q P
Sbjct: 1 MGIPGLKDELGPGERVSLARFSIGHLQRTRKPLRIAVDISIWLFQVQAAQGGANPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF RL LI+L IFV DG +R G V+++
Sbjct: 57 -LRTLFFRLTRLISLPIQPIFVFDGP--------HRPDYKRGRLVSKNAA---------- 97
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ I ++ L PC EAEA+CA L + D S+D D +FG++
Sbjct: 98 ------AAQIDLSRKLIELFSYPCHVAPGEAEAECAKLQRTGVVDAVMSNDVDALMFGSK 151
Query: 173 TVYRDI------WLGERGYVVCY--EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+ G +V Y E +D + K+ ++ +ALL G DYS GV
Sbjct: 152 VTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVALDTRGMVLVALLSGGDYSPAGVALC 211
Query: 224 GPESACQIVKS 234
GP+ A +I ++
Sbjct: 212 GPKLAVEIARA 222
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 125/291 (42%), Gaps = 39/291 (13%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG+ L ++ S K + + ++V ID S I Q NV + +T
Sbjct: 1 MGIHGLAKLIADHAPSAIKENEIKNYFGRKVAIDASMSIYQFLIAVRSDGNVLTNEAGET 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---------SGSEVTQD 100
L GLF+R ++ ++V DG P +K RR S +E D
Sbjct: 61 TS-HLMGLFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQERREEAQKQASEAEKEGD 119
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
N+DK + M E C +E K L +GVP ++ EAE+QCA L
Sbjct: 120 ADNIDKFTRRTVRMTPE-HC--EEGKKLLKLMGVPVVQAPCEAESQCAALVKAGKVYATG 176
Query: 161 SSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D FG+ + R + E + + + + + ++L F I L +LLG DY
Sbjct: 177 TEDMDALTFGSNVMLRHLTFSEARKMPIQEFHLKNALQELNFSMEQFIDLCILLGCDYCD 236
Query: 219 GVRGLGPESACQIV---KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
++G+GP+ A ++ KS+ D +++ I+SE K + E W +K
Sbjct: 237 SIKGVGPKRAVGLIEKYKSIED--IVKNISSE--------KFTVPENWPYK 277
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ-------DDKNLD- 105
L G+F+R LI I+V DG P++K +R E + ++K +
Sbjct: 64 LSGIFYRTINLIEAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKKYQVAIAEEKYEEA 123
Query: 106 -KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + + E M+KEA L ++G+P ++ E EAQ A + + S D
Sbjct: 124 RKYAQISTRLNDE---MVKEAIKLLDAMGLPTVQAPAEGEAQAAYMAKKGDVWSSGSQDY 180
Query: 165 DIFLFGARTVYR-------------DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALL 211
D LFG+ V R D+++ + V+ E + I KLG R LI + ++
Sbjct: 181 DSILFGSPRVVRNLTVSGKRKLPKKDVYIDIKPEVI--ESNVIYEKLGINREKLIIIGIM 238
Query: 212 LGSDYS-QGVRGLGPESACQIVKS 234
LG+DY+ G++G+G ++A +IVKS
Sbjct: 239 LGTDYNPDGIKGVGIKTALKIVKS 262
>gi|395327708|gb|EJF60105.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 604
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 102/412 (24%), Positives = 152/412 (36%), Gaps = 88/412 (21%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK-------------RVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD+L K L HL K RV ID S W + P
Sbjct: 1 MGVPGLWDVLRPAGKMRSLTHLSVKDGFEANPDGKRGFRVGIDASIWFYHATYGREGENP 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDK 106
+ LR LF R L+ + +FV DG P IK R + SG ++ +
Sbjct: 61 E-----LRTLFFRCTRLMGMPFLPLFVFDGPKRPEIK----RGKRISG----KNHWMVQG 107
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
M + G E+ M + A G EAEA+ A LN + D S D D
Sbjct: 108 MQEIISAFGFEWR-MASGSVAPG------------EAEAELAYLNRIGVIDAVLSDDVDT 154
Query: 167 FLFGARTVYRD---IWLGER-------------GYVVCYEMDDIERK--LGFGRNSLITL 208
FLFGA+ V R+ G R +V+ Y D+ + + L+ +
Sbjct: 155 FLFGAKLVVRNPSATLSGNRTNPMKNAAGKDDGNHVMTYAAADLRAHPDIQLTQGGLVLV 214
Query: 209 ALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCN 268
+L G DYS G+ G G ++A + + A G + + A+ ++ +
Sbjct: 215 GVLRGGDYSDGLHGCGVQTAHGLAR-----------AGFGDALLDAARTLPRDALAAFLA 263
Query: 269 NKEESLNQEINVNGTD----------HSLQRETPFSQVIDAYSNPKCYSADSEAVHR--- 315
E + E+ N ++ + P V+ AY+ P A A HR
Sbjct: 264 RWREDVRVELRTNARGCLPRKCAALARAVPEDFPSVDVVLAYARPVTSEAKG-AAHRNAN 322
Query: 316 VLAQHLFQHARLHQVCAQFFQWP-----PEKTDEYILPKIAERDLRRFANLR 362
V R+ +C +F+W ++ + P R LRR A LR
Sbjct: 323 VAWDRDPDLGRIAGLCEMYFEWGVKEIIVKRFSTVLWPAAVLRILRRAAILR 374
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 121/267 (45%), Gaps = 31/267 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
+GV NL D++ E K+ + L L+ V +D + Q + +P L
Sbjct: 4 LGV-NLKDLIPEKAKQEIDLKALKGYTVALDGYNMLYQFLAAIR--QPDGTPLIDSKGNI 60
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---SGSEVTQDDKNLDKM 107
+ GLF+R LI I+V DG P +K R+N +E Q K K+
Sbjct: 61 TSHISGLFYRTINLIEEGVKPIYVFDGKPPEMKKKEIEDRINRRQQYAEKYQKAKQEGKI 120
Query: 108 SSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
++ + S M+++AK L +G+P ++ + EAQ A + + S D
Sbjct: 121 EEAKKYAQASTSLSNKMVEDAKQLLTYMGIPWVQAPADGEAQAAYMAKKGDVYATGSQDY 180
Query: 165 DIFLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLG 213
D LFG+ + R++ + G+R Y+ ++D+ + L R LI + +LLG
Sbjct: 181 DSLLFGSPKLLRNLAITGKRKLPNKEEYIEIKPELINLNDMLKALEITREQLIVIGILLG 240
Query: 214 SDYS-QGVRGLGPESACQIVKSVGDNV 239
+D++ G +G GP++A + VK D +
Sbjct: 241 TDFNPDGFKGYGPKTALKYVKEHRDPI 267
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L SC K +++ +D S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIV--VGRTGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F+R L+ ++V DG P +K +R + ++ T D
Sbjct: 59 GEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEA 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + + + + K L +GVP +E EAEAQCA L G
Sbjct: 119 GNKEDIEKYSKRTVKVTKQHN---DDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYG 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + + V+ +E+ I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G ++A ++++ G
Sbjct: 236 CDSIRGIGGQTALKLIRQHG 255
>gi|317027813|ref|XP_001400048.2| rad2-like endonuclease [Aspergillus niger CBS 513.88]
Length = 875
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 146/362 (40%), Gaps = 60/362 (16%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLIHAIGAGERISLSRLAITHLERTARPIRIAVDISIWLFQVQAGRGGRNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF+RL ++AL +FV DG + P K G V+
Sbjct: 57 -LRTLFYRLLKILALPIHPLFVYDGKNKPPFK---------RGKAVSS------------ 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ G+ + +I+ +K L P E EAEA+CA L + D ++D D +FG+
Sbjct: 95 RSYGN--APIIRLSKILVDLFKFPRHEAPGEAEAECARLQRAGVVDAVMTNDVDALMFGS 152
Query: 172 RTVYRDI------WLGERGYVVCYEMDDI--ERKLGFGRNSLITLALLLGSDY-SQGVRG 222
G +V CY M+ + R +I A+L G DY GV
Sbjct: 153 TFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSSVKLNRAGMILFAMLSGGDYLPSGVPK 212
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
G + A +I K+ +L+ + S+G R + +E ++ E Q
Sbjct: 213 CGSKLAGEIAKAGFGADLLEILESDGAELDTRLSDW-RERLQYELEENESGYFQ------ 265
Query: 283 TDHSLQR---ETPFSQVIDAYSNPKCYS-ADSEAVHRVLAQHLFQH---ARLHQVCAQFF 335
T H + R P ++ Y+NP S D +A+ + L+ + L + A F
Sbjct: 266 TKHKVVRIPDTFPDRTILSYYANPVVSSTGDIKALQQYLSNAWDKDIDVVELRRFAADAF 325
Query: 336 QW 337
+W
Sbjct: 326 EW 327
>gi|396082166|gb|AFN83777.1| Rad2 [Encephalitozoon romaleae SJ-2008]
Length = 559
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
+ ++ EA++QC + ++ DG + D+D+ L+G TVYR+ + +R + Y +
Sbjct: 396 FNISYVDAPTEADSQCGFMCYRNIVDGVITEDNDVLLYGG-TVYRNFFRRDRE-IEKYSL 453
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ IE+ L R +LI L+ +LGSDY+ GV+G+GP A + V+
Sbjct: 454 EKIEKDLRLDRKNLIRLSHMLGSDYTPGVKGIGPVKALEAVR 495
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R ++ ++V DG P +K RR SE + ++ N+
Sbjct: 64 LMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELARRTERRSEAEKHLQEAQEAGEETNI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + E K L + +G+P +E EAEA CA L + D
Sbjct: 124 EKFSKRLVKVTQQHT---DECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + ++ I + LG + L +LLG DY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAVELIK 251
>gi|429962587|gb|ELA42131.1| hypothetical protein VICG_00772 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 25/257 (9%)
Query: 1 MGVKNLWDIL-ESCKKTL---PLHHLQNKRVCIDLSCWIVQL------QNVNKSYRPQTD 50
MG+K L ++ E CKK + + + + ++ ID S + Q N Y T
Sbjct: 1 MGIKQLSKLIKEKCKKAIVSRKMGYYSSTKIAIDASLCLYQFLIAVRTDGANLGYEDATT 60
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDD 101
L G+F+R +I ++V DG P IK ++R + +++ +D
Sbjct: 61 S-HLVGMFYRTIRIIESGIIPVYVFDGKAPPIKAIELQKRNERRLKAEKMLEQAKLEEDK 119
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K +DK +R + E S + + K L +GVP + E+EA C+LL + +
Sbjct: 120 KEMDKHE--KRKVKVEES-HVDDCKRLFRLMGVPFVTAESESEAYCSLLCKRGVVKAVAT 176
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FGA + R++ + + Y + I ++L S I L +L+G DY
Sbjct: 177 EDMDALCFGAPILLRNMNASQSKNLDIDEYNLGTILKELELTMGSFIDLCILMGCDYCDT 236
Query: 220 VRGLGPESACQIVKSVG 236
++G+G + A ++K G
Sbjct: 237 IKGVGHKRAYDLIKKYG 253
>gi|393225736|gb|EJD33645.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 603
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 141/347 (40%), Gaps = 64/347 (18%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKL 84
RV IDLS W+ +Q++++ +PQ K +R LF R L+A+ +FV DG ++
Sbjct: 30 RVGIDLSIWLGHMQSLSR--KPQNGKNAGIRLLFFRCARLLAMPILPVFVFDG----LQR 83
Query: 85 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 144
Y+R D+ SL + + AL + G C + EAE
Sbjct: 84 PAYKR-------------GKDRKYSLPNS---------ENLYALIEAFGFECHQAPGEAE 121
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGARTVYR----DIWLGERGYVVCY----------- 189
A+ A LN D + SD+F+FGA T+ R D R ++V
Sbjct: 122 AELAYLNNIGAIDAIWMDASDVFVFGALTILRSCASDTLSSNRSHLVVTSEGKQDDNHVH 181
Query: 190 ---EMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 246
D + + RN LI +ALL G DY + + + S C G N V +IA
Sbjct: 182 VYCSTDLLVGSIQLDRNGLILIALLRGGDYHKVNQPISYISDCIDACLQGVNGVGIKIAH 241
Query: 247 E------GLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-----GTDH-----SLQRE 290
GLS ++ + + +S + QE+ + G H + ++
Sbjct: 242 ALARCGFGLSLATAVQSLQHDEFSNALTQWRSEIVQELYTDSRGQLGRRHQKLAANFPQD 301
Query: 291 TPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 337
P Q+ AY+ P ++ +AV R+ F A L +C +F W
Sbjct: 302 FPDLQIYRAYAQPITSGSNGDAV-RITWYRPFDLAALAGLCEHYFNW 347
>gi|300706556|ref|XP_002995534.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
gi|239604679|gb|EEQ81863.1| hypothetical protein NCER_101536 [Nosema ceranae BRL01]
Length = 563
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
+P L+ E++AQCA L + DG + DSDI L G VY++ + + Y+ Y+
Sbjct: 402 FNMPYLDSPSESDAQCASLCKSGVVDGVITEDSDILLHGG-VVYKNFFRKNK-YITKYDP 459
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
I +G N LI+L +LGSDY+ G++G+G + A + +KS
Sbjct: 460 KKIYEVMGLSLNDLISLGYILGSDYTVGIKGIGIKKAVEYIKS 502
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 24/258 (9%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-----TDKLF 53
MG+ NL I++ + + PL + K++ D S Q +S Q T
Sbjct: 1 MGIHNLTKIIKKYYRPIEHPLSFYRTKKMAFDASLLTYQYLIAIRSDGAQLAYNSTSTSH 60
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEVTQDDKNLDKMSS 109
+ G F+++ L + +FV DG P +K RR N+ + ++ ++ +DK+
Sbjct: 61 ISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKNAAEKYSEAEEQMDKVEM 120
Query: 110 LRRN-----MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + +G E + E K L ++GV EAEA CA L + + D + D
Sbjct: 121 EKYDKRKLKIGKEHT---DEIKLLLDAMGVTYTISENEAEAFCATLCRKGIVDYVCTEDM 177
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D F A + ++ + V Y +D+I R + ++ + L +LLG DY+ ++G+G
Sbjct: 178 DALCFRAPVLLKNFV---KDTVAEYRLDEILRDMKLEFSAFMDLCILLGCDYAGTIKGIG 234
Query: 225 PESACQIVKSVG--DNVV 240
P A +++ G +N+V
Sbjct: 235 PMKAETLIRRHGNIENIV 252
>gi|115391513|ref|XP_001213261.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194185|gb|EAU35885.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 142/359 (39%), Gaps = 57/359 (15%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + S ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINAIGSGERISLSKLAITHLERTARPIRIAVDISIWLFQVQAGRGGRNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL +AL +FV DG + ++R +G
Sbjct: 57 -LRTLFYRLLKFLALPIHPLFVYDGR----EKPPFKRGKATGGSYGN------------- 98
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ +++ +K L P EAEA+CA L + D S+D D +FG+
Sbjct: 99 ------APIVRLSKILVDLFKFPRHNAPGEAEAECARLQRAGVVDCVMSNDVDALMFGST 152
Query: 173 TVY----RDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGP 225
++ G +V CY M DI + R +I A+L G DY GV G
Sbjct: 153 LTIMNFSKEGGSGPATHVTCYNMGNSDIPSTVSVDRAGMILFAMLSGGDYLPSGVPKCGS 212
Query: 226 ESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 285
+ A +I ++ +++ + +G +R + +E ++ E Q T H
Sbjct: 213 KLAAEIARAGFGADLMEAVDCDGPEVDERL-SEWRERLQYELEENESGYFQ------TKH 265
Query: 286 SLQR--ET-PFSQVIDAYSNPKCYS-ADSEAVHRVLAQHLFQH---ARLHQVCAQFFQW 337
R ET P ++ Y+ P + D E + R L Q L Q A F+W
Sbjct: 266 KAVRIPETFPDKAILSYYAKPVVSTDNDIEHLQRRLMNAWDQEIDVMELRQFTADAFEW 324
>gi|212526840|ref|XP_002143577.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
gi|210072975|gb|EEA27062.1| Rad2-like endonuclease, putative [Talaromyces marneffei ATCC 18224]
Length = 863
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + + L + HL+ R+ +D+S W+ QLQ P+
Sbjct: 1 MGIPGLGKAIGNADRIALSRLAVRHLEVSKRPIRIAVDISIWLFQLQAGRGGQNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF RL L+AL +FV DG P K R + +G
Sbjct: 57 -LRTLFFRLVRLLALPIHPLFVYDGKQKPPFK----RGKATTG----------------- 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ GS + +I +K L P + EAEA+CA L + D S+D D +FG+
Sbjct: 95 RSYGS--APIINLSKILIDLFKFPRHDAPGEAEAECARLQQAGVVDAVMSNDVDTLMFGS 152
Query: 172 R-TVYRDIWLGERG-----YVVCYEMD---DIERKLGFGRNSLITLALLLGSDY-SQGVR 221
TV G G ++ CY D+E + R ++ A+L G DY GV
Sbjct: 153 GLTVMNFSKEGSTGTSAATHIDCYTTKTQLDVEANVKLTRAGMVLFAMLSGGDYLPSGVT 212
Query: 222 GLGPESACQIVKS 234
GP A +I K+
Sbjct: 213 KCGPGLAGEIAKA 225
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MG+ K L+D + + L + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDKSPNAIREQELKNFFGRRIAIDASMSIYQFIIAMKGFQDGQGLELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R +I I+V DG P +K R +E +
Sbjct: 61 KGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAEREFEKAKD 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + + I E+K L +G+P ++ EAEAQCA L +
Sbjct: 121 AGDDEMMEKMSKRTVRVSRD---QIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+ + R + + ++ + +D++ + G + L +LLG D
Sbjct: 178 AVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQITGLSMGQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y V G+GP+ A + ++ G
Sbjct: 238 YVPKVPGIGPQKAWEGIQRYG 258
>gi|134056976|emb|CAK44323.1| unnamed protein product [Aspergillus niger]
Length = 872
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 146/362 (40%), Gaps = 60/362 (16%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLIHAIGAGERISLSRLAITHLERTARPIRIAVDISIWLFQVQAGRGGRNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF+RL ++AL +FV DG + P K G V+
Sbjct: 57 -LRTLFYRLLKILALPIHPLFVYDGKNKPPFK---------RGKAVSS------------ 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ G+ + +I+ +K L P E EAEA+CA L + D ++D D +FG+
Sbjct: 95 RSYGN--APIIRLSKILVDLFKFPRHEAPGEAEAECARLQRAGVVDAVMTNDVDALMFGS 152
Query: 172 RTVYRDI------WLGERGYVVCYEMDDI--ERKLGFGRNSLITLALLLGSDY-SQGVRG 222
G +V CY M+ + R +I A+L G DY GV
Sbjct: 153 TFTVMGFSKESGSSTGAATHVTCYRMNTAGDPSSVKLNRAGMILFAMLSGGDYLPSGVPK 212
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
G + A +I K+ +L+ + S+G R + +E ++ E Q
Sbjct: 213 CGSKLAGEIAKAGFGADLLEILESDGAELDTRLSDW-RERLQYELEENESGYFQ------ 265
Query: 283 TDHSLQR---ETPFSQVIDAYSNPKCYS-ADSEAVHRVLAQHLFQH---ARLHQVCAQFF 335
T H + R P ++ Y+NP S D +A+ + L+ + L + A F
Sbjct: 266 TKHKVVRIPDTFPDRTILSYYANPVVSSTGDIKALQQYLSNAWDKDIDVVELRRFAADAF 325
Query: 336 QW 337
+W
Sbjct: 326 EW 327
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 136/309 (44%), Gaps = 37/309 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K+L+ I+ E+ + ++N ++V ID S I Q +N+S
Sbjct: 1 MGIKHLYQIISENAPDAVKSGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------T 98
+ L GLF+R ++ ++V DG+ P +K +R+ E T
Sbjct: 61 TS---HLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEAKET 117
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + +E K L +G+P + EAEAQCA+L
Sbjct: 118 GTTEDVEKFSRRTVRVTREHN---EECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + + R + E + ++ +D + LG R + + L +LLG DY
Sbjct: 175 AASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
+ +GP +A ++++ D+ L+++ E + + K + + W ++ + L
Sbjct: 235 LDPIPKVGPNTALKLIR---DHGSLEKVV-EAMKNDPKQKYTIPDDWPYE---QARDLFF 287
Query: 277 EINVNGTDH 285
E +V DH
Sbjct: 288 EPDVRPADH 296
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 37/309 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K+L+ I+ E+ + + ++N ++V ID S I Q +N+S
Sbjct: 1 MGIKHLYQIISENAPDAIKVGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK----- 102
+ L G F+R ++ ++V DG+ P +K +R+ E + +
Sbjct: 61 TS---HLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHEEAKET 117
Query: 103 ----NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
+++K S + E + +E K L +G+P ++ EAEAQCA+L
Sbjct: 118 GTAEDVEKFSRRTVRVTREHN---EECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + + R + E+ E ++ + LG R + L +LLG DY
Sbjct: 175 AASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
+ +GP +A ++++ D+ L+++ E + + K + E W ++ + L
Sbjct: 235 VDPIPKVGPNTALKMIR---DHGSLEKVV-EAMENDPKKKYTIPEDWPYE---QARDLFF 287
Query: 277 EINVNGTDH 285
E +V DH
Sbjct: 288 EPDVRPADH 296
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 29/313 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L ++ K + + ++V ID S + Q QN + ++ +
Sbjct: 1 MGIKGLTALISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT------QDDKN 103
L G F+R +I ++V DG+ P +K ++R E +D +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEEEQKDVAD 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++KM L R +E + L +G+PC+ EAEAQCA L S D
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG + + + E+ + +++D L I L +LLG DY ++
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMSMPQFIDLCILLGCDYLDPIK 240
Query: 222 GLGPESACQIVK--SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
G+GP++A ++++ +NVV + + EG V+ E W F+ K N ++
Sbjct: 241 GIGPKTALKLIREHKTLENVV-EHLKEEGKKSVQIP-----EHWPFQEARKIFE-NPDVQ 293
Query: 280 VNGTDHSLQRETP 292
G D L+ E P
Sbjct: 294 -KGKDLDLKWEAP 305
>gi|350634861|gb|EHA23223.1| 5'-3' exonuclease [Aspergillus niger ATCC 1015]
Length = 543
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 137/342 (40%), Gaps = 56/342 (16%)
Query: 17 LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLI 72
L + HL+ R+ +D+S W+ Q+Q P+ LR LF+RL ++AL +
Sbjct: 16 LAITHLERTARPIRIAVDISIWLFQVQAGRGGRNPE-----LRTLFYRLLKILALPIHPL 70
Query: 73 FVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLS 131
FV DG + P K G V+ R+ G+ + +I+ +K L
Sbjct: 71 FVYDGKNKPPFK---------RGKAVSS------------RSYGN--APIIRLSKILVDL 107
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI------WLGERGY 185
P E EAEA+CA L + D ++D D +FG+ G +
Sbjct: 108 FKFPRHEAPGEAEAECARLQRAGVVDAVMTNDVDALMFGSTFTVMGFSKESGSSTGAATH 167
Query: 186 VVCYEMDDI--ERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQ 242
V CY M+ + R +I A+L G DY GV G + A +I K+ +L+
Sbjct: 168 VTCYRMNTAGDPSSVKLNRAGMILFAMLSGGDYLPSGVPKCGSKLAGEIAKAGFGADLLE 227
Query: 243 RIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQR---ETPFSQVIDA 299
+ S+G R + +E ++ E Q T H + R P ++
Sbjct: 228 ILESDGAELDTRLSDW-RERLQYELEENESGYFQ------TKHKVVRIPDTFPDRTILSY 280
Query: 300 YSNPKCYS-ADSEAVHRVLAQHL---FQHARLHQVCAQFFQW 337
Y+NP S D +A+ + L+ L + A F+W
Sbjct: 281 YANPVVSSTGDIKALQQYLSNAWDKDIDVVELRRFAADAFEW 322
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 133/313 (42%), Gaps = 43/313 (13%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+KNL+ IL E + ++N ++V ID S I Q +N+S
Sbjct: 1 MGIKNLFQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------T 98
+ L G+F+R ++ ++V DG+ P +K +R E T
Sbjct: 61 TS---HLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKET 117
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + E + L +GVP + EAEAQCA+L
Sbjct: 118 GTAEDIEKFSRRTVRVTREHNA---ECQKLLKLMGVPFIIAPTEAEAQCAVLAKGGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + R + E+ E +D + LG RN + L +LLG DY
Sbjct: 175 AASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSK---KEGWSFKCNNKEES 273
V +GP +A ++++ ++ L+ + + ++K SK E W F + +E
Sbjct: 235 LDPVPKVGPSTALKLIR---EHKTLEGV----VDYIKNDPKSKYTLPEDWPF-ADARELF 286
Query: 274 LNQEINVNGTDHS 286
LN +V DH+
Sbjct: 287 LNP--DVRPADHA 297
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 118/264 (44%), Gaps = 26/264 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQ---NKRVCID----LSCWIVQLQNVNKSYRPQTDKL 52
MG+K L+ I+ E+C + ++ ++V ID L ++V +++ + T +
Sbjct: 1 MGIKGLYPIIKENCPDAVKEGEIKTQFGRKVAIDASMSLYSFLVAVRSGGEQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L G+F+R ++ ++V DG+ P +K +R SE T
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + EA+ L +G+P + EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHNA---EAQRLLKLMGIPYIIAPTEAEAQCAVLARGGKVFAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E+ E +D + L + I +LLG DY
Sbjct: 178 EDMDTLTFASPVLVRKLTFAEQRKEPVQEIHLDRVLEGLEMDQTQFIDFCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVK--SVGDNVVL 241
V+G+GP+SA ++K +NVV+
Sbjct: 238 VKGIGPKSALALIKEHKTLENVVV 261
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 116/287 (40%), Gaps = 31/287 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL------QNVNKSYRPQTD 50
MG+ K L D S K + ++V +D S I Q N
Sbjct: 1 MGILGLSKLLGDYAPSAMKENEFKNYFGRKVAVDASMCIYQFLIAVRQDGSNLMNEDGET 60
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DD 101
L G+F+R ++ ++V DG P +K +R E + D+
Sbjct: 61 TSHLMGMFYRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKERREEAQKQLEKAEEAGDE 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+N++K + + + + +E K L +G+P + EAEAQCA L +
Sbjct: 121 ENIEKFNRRLVKVSKQHN---EECKELLKYMGIPFINAPGEAEAQCAALVKAGKVYATGT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG + R++ + E + + Y + + +LG ++ I L +LLG DY
Sbjct: 178 EDMDALTFGTTVLLRNLTVAEARKLPIKEYYYNRVLEELGLTKDEFIDLCILLGCDYCDS 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+RG+GP+ A ++K + E L + K + E W +K
Sbjct: 238 IRGIGPKRAIDLIKQ-------HKTIDEILKHLDSKKYTVPEDWMYK 277
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L ++ K++ + ++ +++ ID S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIV--VGRSGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F R L+ ++V DG P +K +R + +E T+D
Sbjct: 59 GEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALET 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + + + + K L +GVP +E EAEAQCA L G
Sbjct: 119 ANKEDIEKFSKRTVKVTKQHN---DDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYG 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + ++ V+ +E+ I +L + I L +L G DY
Sbjct: 176 VVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G +A ++++ G
Sbjct: 236 CDSIRGIGGLTALKLIRQHG 255
>gi|254583167|ref|XP_002499315.1| ZYRO0E08932p [Zygosaccharomyces rouxii]
gi|238942889|emb|CAR31060.1| ZYRO0E08932p [Zygosaccharomyces rouxii]
Length = 581
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 120/282 (42%), Gaps = 54/282 (19%)
Query: 1 MGVKNLWDILESC--KKTLPLH---------HLQNKRVCIDLSCW------IVQLQNVNK 43
MGV +W++L K +PL H ++ R+ ID W I+ + K
Sbjct: 1 MGVPQIWELLRPYLQDKRVPLKKFVSDFKFSHGRSPRIAIDGYSWLFECGFILNQETPGK 60
Query: 44 SYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLS----------TYRRRLN 92
T + +RL+ L+ALN I V DGS+ P+ K + Y N
Sbjct: 61 YASHGTIGKAVLNFVYRLKELLALNITFILVFDGSMKPSFKKNFGSPLSCAEDDYWSTWN 120
Query: 93 SGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 152
S E+ + + + L+ + SE ++ K + S+ + +E E EAQCA L
Sbjct: 121 SHMEIHERNGH-----CLKIMLDSEGLHFMQVVKGVLGSMRISYVEACGEGEAQCAWLQR 175
Query: 153 ESLCDGCFSSDSDIFLFGARTVYRDIW-----LGERG--------------YVVCYEMDD 193
D ++DSD +FGA + R+ LG G +V ++D
Sbjct: 176 NGHVDYVLTNDSDALVFGATRLLRNYSKFTNDLGATGNSPLGKQRSSSKDLFVTVVDLDQ 235
Query: 194 IERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ + SL+ ++LLG+DY+QGV+G+G A ++ +
Sbjct: 236 LNSATNDRYNWWSLLFFSVLLGADYNQGVKGMGKVKAAKLAQ 277
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 29/251 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L L ++V ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELESLYGRKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLDKMSSLRRNMGSEF 118
+V DG P K +R + E + + D + + R +E
Sbjct: 71 AGIKPAYVFDGKPPEFKKRELEKRKEAREEAEIKWKEALAKGDIEEARKYAQRATRVNE- 129
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 -MLIEDAKKLLELMGIPVIQAPSEGEAQAAYMASKGKVYASASQDYDSLLFGAPRLVRNL 188
Query: 179 WL-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 226
+ G+R G + E +D++ L R LI LA+L+G+DY+ G++G+GP+
Sbjct: 189 TITGKRKLPGKNIYVEIKPELIVLDEVLSSLKLTREKLIELAILVGTDYNPGGIKGIGPK 248
Query: 227 SACQIVKSVGD 237
A +IV+ D
Sbjct: 249 KALEIVRHSKD 259
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-TDKL--- 52
MG+ K L D+ + K + + +++ ID S + Q +S Q TD
Sbjct: 1 MGILGLNKLLSDVAPNAIKFSDIKNYFGRKIAIDASMTLYQFLIAVRSEGAQLTDSSGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G F+R ++ ++V DG P +K +R E ++ N
Sbjct: 61 TSHLMGTFYRTIRMVENGIKPVYVFDGKPPELKSGELSKRAEKREEAQKALAKAEESGNT 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+++ R + + E K L +G+P +E EAEAQCA L + D
Sbjct: 121 EEVDKFSRRLVKVTKDHVAECKELLKLMGIPYIEAPCEAEAQCAALVKAGKVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + E +D + +L +N I L +LLG DY ++G
Sbjct: 181 DALTFGSNIILRHLTFSEARKMPVQEIYLDKVLAELEMTQNEFIDLCILLGCDYCDSIKG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAIELIK 251
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQ---NKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG 56
MG+K L +L E K + H ++ ++V ID S I Q + L G
Sbjct: 1 MGIKGLTSLLVEHAPKAIQEHDIKTLFGRKVAIDASMSIYQFL-IAPPVLTLNGYSHLMG 59
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL---------NSGSEVTQDDKNLDKM 107
F+R ++ ++V DG P +K +RL ++ T +++D+
Sbjct: 60 FFYRTIRMVENGIKPLYVFDGKPPEMKAGVLSKRLARREEAKEEGEEAKETGTTEDVDRF 119
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S RR + + + LGL +G+P + EAEAQCA L S D D
Sbjct: 120 S--RRTVKVTREHNEECRRLLGL-MGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMDTL 176
Query: 168 LFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
F A +YR + E + + +D L + I L +LLG DY + ++G+GP
Sbjct: 177 TFSAPVLYRHLTFSEARKQPISEIHLDKALEGLEMNMSQFIDLCILLGCDYLEPIKGIGP 236
Query: 226 ESACQIVKSVGD 237
+SA ++V+ G+
Sbjct: 237 KSALKLVREHGN 248
>gi|401828649|ref|XP_003888038.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
gi|392999112|gb|AFM99057.1| DNA repair flap endonuclease [Encephalitozoon hellem ATCC 50504]
Length = 564
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
+ ++ EA++QC + ++ DG + D+D+ L+G T++R+ + +R + Y +
Sbjct: 401 FNISYVDAPTEADSQCGFMCYSNIVDGVITEDNDVLLYGG-TIFRNFFRKDR-EIEKYSL 458
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ IE +L R +LI L+ LLGSDY+ GVRG+GP A V+
Sbjct: 459 EKIEEELKLDRKNLIELSHLLGSDYTPGVRGIGPVKALDAVR 500
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 14/194 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---------DKNL 104
L+G+F R L+ ++V DG P +K +RL+ +E T+D +++
Sbjct: 49 LQGMFTRTIRLLESGMKPVYVFDGKPPDMKKQELAKRLSKRAEATEDLSEALKADNKEDI 108
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + ++ K L +GVP +E EAEAQCA L + S D
Sbjct: 109 EKFSKRTVKVTKQHN---EDYKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDM 165
Query: 165 DIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FGA R + ++ V+ +E+ I +L + I L +L G DY +RG
Sbjct: 166 DSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRG 225
Query: 223 LGPESACQIVKSVG 236
+G ++A ++++ G
Sbjct: 226 IGGQTALKLIRQHG 239
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 18/254 (7%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQ------TD 50
MG+K+L+ ++ E+ + ++N ++V ID S I +S Q
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMSDAGET 60
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK------LSTYRRRLNSGSEVTQDDKNL 104
L G+F+R ++ ++V DG+ P +K S +R + E ++
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKETGTA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ M R +E K L +GVP ++ EAEAQCA+L S D
Sbjct: 121 EDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D F A + R + E+ E +D LG R I L +LLG DY + +
Sbjct: 181 DTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLEPIPK 240
Query: 223 LGPESACQIVKSVG 236
+GP +A ++++ G
Sbjct: 241 VGPNTALKLIREHG 254
>gi|238489679|ref|XP_002376077.1| Rad2-like endonuclease, putative [Aspergillus flavus NRRL3357]
gi|220698465|gb|EED54805.1| Rad2-like endonuclease, putative [Aspergillus flavus NRRL3357]
Length = 879
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 162/420 (38%), Gaps = 74/420 (17%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ RV +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINAIGPGERISLSKLAITHLERTARPIRVAVDISIWLFQVQAGRGGKNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL +AL +FV DG ++R +GS
Sbjct: 57 -LRTLFYRLLKFLALPVHPLFVYDGK----HKPPFKRGKATGS----------------- 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
GS + +I +K L P + EAEA+CA L + D S+D D +FG+
Sbjct: 95 TYGS--APIIGLSKILVDLFRFPRHDAPGEAEAECARLQRAGVVDAVMSNDVDALMFGST 152
Query: 173 TVYRDIWLGERG-------YVVCYEMDDIERK--LGFGRNSLITLALLLGSDY-SQGVRG 222
+ + E G ++ CYEM ++ R +I A+L G DY GV
Sbjct: 153 LTIMN-FSKESGSGTSAATHITCYEMGNLNSSSCSRLDRAGMILFAMLSGGDYLPSGVPK 211
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN- 281
G + A +I ++ +L+ + NS++ + K N E L E+ N
Sbjct: 212 CGSKLAAEIARAGFGEDLLEVL------------NSEETELNVKLNEWRERLQYELEANE 259
Query: 282 ----GTDHSLQR---ETPFSQVIDAYSNPKCY-SADSEAVHRVLAQHLFQHA---RLHQV 330
T H R P V+ Y+ P S D E + R L Q L +
Sbjct: 260 SGYFQTKHKAVRIPESFPDRTVLSYYAKPIVSDSKDLEVLQRRLENAWDQEIDALELRRF 319
Query: 331 CAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSR 390
A F+W ++ +AE + LR + A L VP+ + + KSR
Sbjct: 320 AADTFEWNYRSGARKVIRLLAEPLVSYRLRLRKDLTAFPFRLSESDVPM---LQKVYKSR 376
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 114/291 (39%), Gaps = 31/291 (10%)
Query: 1 MGVKNL----WDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L DI K + ++V ID S + Q ++ Q +
Sbjct: 1 MGIKGLSQLIADIAPFAVKEGEIKQFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK---- 106
L G F+R L+ ++V DG P +K +R E K LDK
Sbjct: 61 TSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEA---QKALDKATEA 117
Query: 107 -----MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ R + EAK L +GVP +E EAEAQCA L +
Sbjct: 118 GATEDIEKFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKVYATAT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ + R + E + V + + + + ++ I L +LLG DY
Sbjct: 178 EDMDALTFGSNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGCDYCDT 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNK 270
+RG+GP+ A +++ R + L + R K EGW+++ K
Sbjct: 238 IRGIGPKKAIELINK-------HRSIEKILEHLDRQKYIVPEGWNYEQARK 281
>gi|409075870|gb|EKM76246.1| hypothetical protein AGABI1DRAFT_9336, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 528
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 145/383 (37%), Gaps = 90/383 (23%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK-------------RVCIDLSCWIVQLQNVNKSYRP 47
MGV LWD+L+ KT L L K R+ ID S W + Y
Sbjct: 1 MGVAGLWDVLKPAAKTRSLTELAVKEGFQTNPKGLRGYRIGIDASIWFFHAE-----YGK 55
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRR--RLNSGSEVTQDDKNLD 105
+ + LR LF R L +FV DG K ++R R+N + +K +
Sbjct: 56 EGENPVLRTLFFRCATLTKAPFLPLFVFDGP----KRPDFKRGKRINKST-----NKLIT 106
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
M ++ G E+ A G EAEA+ A LN + DG S D D
Sbjct: 107 GMKTIVEAFGFEWRT------APG------------EAEAELAYLNRIGVIDGILSDDVD 148
Query: 166 IFLFGARTVYRDI----------------WLGERGYVVCYEMDDIE--RKLGFGRNSLIT 207
FLFGA TV R+ ++ + + + DI+ + R LI
Sbjct: 149 NFLFGALTVIRNQSNNLSGNKSNPVVNSEGKDDKNHTRVFRLQDIQDHEDIQLSRGGLIL 208
Query: 208 LALLLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ LL G DY +G+R G +A + + GD + F K S++E F
Sbjct: 209 IGLLSGGDYEEGLRKCGMVTAHSLARCGFGDTL-----------FEAANKLSQEELVDFL 257
Query: 267 CNNKEESLNQEINVNGTDHSLQRETPFSQ-VIDAYSNPKCYSADSEAVHRVLAQHLFQH- 324
+EE L QE+ N + R+ S+ V D + N + ++ + H ++
Sbjct: 258 HTWREE-LRQELKTNSKGYLKNRQIALSKSVPDTFPNIDVLLSYAQPITSESLGHAGRNP 316
Query: 325 ----------ARLHQVCAQFFQW 337
A L C +F+W
Sbjct: 317 IITWSKEPNFALLAAACELYFEW 339
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 145/333 (43%), Gaps = 36/333 (10%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L I+ + + + ++V ID S + Q Q +T +
Sbjct: 1 MGIKGLNAIISEHVPTAVRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGAQLSTETGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY----RRRLNSGSEVTQDDKNLD 105
L G+F+R +I +V DG P +K RR + ++ + +
Sbjct: 61 TTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRREETEKKLAEAIDQAE 120
Query: 106 KMSSLRR--NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
KM RR + E + EAK L +GVP L EAEAQCA L + S D
Sbjct: 121 KMKQERRLVRVSKEHN---DEAKQLLELMGVPYLTAPTEAEAQCAELAKKGKVYAAASED 177
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVR 221
D + + R + E +E+D + LG + L ++LG DY + +R
Sbjct: 178 MDTLCYRTPYLLRHLTFSEAKKEPIHEIDTETVLNGLGLTIEQFVDLGIMLGCDYCESIR 237
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKK----EGWSFKCNNKEESLNQE 277
G+GP +A +++K G L++I + FV+ +++ K E W +K +E LN +
Sbjct: 238 GVGPVTALKLIKEHGS---LEKI----IEFVESDESNSKWKIPEDWPYK-EARELFLNPD 289
Query: 278 INVNGTDHSLQRETPFS-QVIDAYSNPKCYSAD 309
+ ++G + +L+ P ++ID N K +S +
Sbjct: 290 V-IDGNEVNLKWSPPKEDELIDFLCNQKKFSEE 321
>gi|448466285|ref|ZP_21599082.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
gi|445814415|gb|EMA64379.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
Length = 325
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|326482509|gb|EGE06519.1| hypothetical protein TEQG_05519 [Trichophyton equinum CBS 127.97]
Length = 768
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L D L ++ + HLQ R + +D+S W+ Q+Q P
Sbjct: 1 MGIPGLKDELGPGERISLARYSIGHLQRTRKPLRLAVDISIWLFQVQAAQGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF RL LI+L IFV DG +R G V+++
Sbjct: 57 -LRTLFFRLTRLISLPIQPIFVFDGP--------HRPDYKRGRLVSKN------------ 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ I+ ++ L PC EAEA+CA L + D S+D D +FG++
Sbjct: 96 ----AAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVDALMFGSK 151
Query: 173 TVYRDI------WLGERGYVVCY--EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+ G +V Y E +D + K+ ++ +ALL G DYS GV
Sbjct: 152 VTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTKGMVLVALLSGGDYSPAGVALC 211
Query: 224 GPESACQIVKS 234
GP+ A +I ++
Sbjct: 212 GPKLAVEIARA 222
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 27/264 (10%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFELKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNDEGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKN 103
L G+F+R ++ N ++V DG P +K +RL E + DD +
Sbjct: 61 TTSHLSGIFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQIDNLKDDAS 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ M+ ++ + EAK L +G+P + EAEAQCA L S D
Sbjct: 121 VSDMTKYQKRLVRVSRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQ 218
D + + R + E + +D I K L + I L +LLG DY +
Sbjct: 181 MDTLCYEPPQLLRHLTFAEARKM---PIDQITYKEAIQGLDMTKEQFIDLCILLGCDYCE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVV 240
++G+GP +A +++K G DN+V
Sbjct: 238 TIKGVGPVTAYKLIKEHGSLDNIV 261
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 123/284 (43%), Gaps = 22/284 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG+KNL ++ + K+ + + ++V ID S + Q V +
Sbjct: 1 MGIKNLATLISEQVPNAIKSRDIKYFHGRKVAIDASMSLYQFLIAVRQQDGVQLAGEDGE 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYR-RRLNSGSEVTQDDKNLD 105
L G+F+R +I +V DGS P +K L + RR ++ +++ + + +
Sbjct: 61 TTSHLMGMFYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRKVRREDTEAKLKEATEQAE 120
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ RR + +EA+ L +G+P + EAEAQCA L S D D
Sbjct: 121 IIKHERR-LVKVLPWHNEEAQKLLSLMGIPYVVAPAEAEAQCAELAKSGKVFAAASEDMD 179
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGL 223
+ + R + E + E D I L + I L ++LG DY +G++G+
Sbjct: 180 TLCYQTPVLLRHLTFSEARKLPIQEFDTDVIYNTLDLTQTQFIDLGIILGCDYCEGIKGV 239
Query: 224 GPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
GP +A +++K G ++++ + +S + EGW FK
Sbjct: 240 GPVNALKLIKEHGSLEAIVEKFENGDIS---SGRWKIPEGWQFK 280
>gi|448454659|ref|ZP_21594212.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
gi|445814746|gb|EMA64705.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
Length = 325
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGSVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LGF R L+ A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLDDLGFDRQGLVDAAMLCGTDFNEGVRGIGPKTAVKAVREHGD 247
>gi|324501186|gb|ADY40530.1| DNA repair protein RAD2 [Ascaris suum]
Length = 947
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 100 DDKNLDKMSS-----LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLES 154
DDK ++ S+ + + E + KE + L G+P + EAEAQC L
Sbjct: 469 DDKKKEEASARKEAQMEAELEREQEGVYKECQELLRLCGIPFVVSPGEAEAQCCELERLG 528
Query: 155 LCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
L G S DSD++LFGA TVY++++ +R V + + I ++LG R + +ALL G
Sbjct: 529 LVQGIVSDDSDVWLFGASTVYKNMFNQKR-RVQMFSSETIHKQLGLTRWETVQIALLSGG 587
Query: 215 DYSQGVRGLGPESACQIVKSVG----DN--------VVLQRIA 245
DY+ G+ +G +A +++ DN VLQRI+
Sbjct: 588 DYTPGLDNIGVVTALELISEFALPSEDNCDEEAQAFAVLQRIS 630
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT--------DKL 52
MG++ LW ILE + + L L+ KR ID+S W+ Q Y+ +T
Sbjct: 1 MGIQGLWPILEPTAEPVTLESLEGKRFAIDVSLWLYQAIYGYGLYQQETRCPHLSLLLSR 60
Query: 53 FLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRR 90
+ LF+++R +FV DG ++P K R R
Sbjct: 61 LSKLLFYKIRP--------VFVFDGPNVPLFKRKILRER 91
>gi|302665075|ref|XP_003024151.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
gi|291188195|gb|EFE43540.1| Rad2-like endonuclease, putative [Trichophyton verrucosum HKI 0517]
Length = 768
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L D L ++ + HLQ R + +D+S W+ Q+Q P
Sbjct: 1 MGIPGLKDELGPGERISLARYSVGHLQRTRKPLRLAVDISIWLFQVQAAQGGANPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF RL LI+L IFV DG +R G V+++
Sbjct: 57 -LRTLFFRLTRLISLPIQPIFVFDGP--------HRPDYKRGRLVSKN------------ 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ I+ ++ L PC EAEA+CA L + D S+D D +FG++
Sbjct: 96 ----AAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVDALMFGSK 151
Query: 173 TVYRDI------WLGERGYVVCY--EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+ G +V Y E +D + K+ +I +ALL G DYS GV
Sbjct: 152 VTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTRGMILVALLSGGDYSPAGVALC 211
Query: 224 GPESACQIVKS 234
GP+ A +I ++
Sbjct: 212 GPKLAVEIARA 222
>gi|326474338|gb|EGD98347.1| hypothetical protein TESG_05726 [Trichophyton tonsurans CBS 112818]
Length = 778
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L D L ++ + HLQ R + +D+S W+ Q+Q P
Sbjct: 1 MGIPGLKDELGPGERISLARYSIGHLQRTRKPLRLAVDISIWLFQVQAAQGGTNPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF RL LI+L IFV DG +R G V+++
Sbjct: 57 -LRTLFFRLTRLISLPIQPIFVFDGP--------HRPDYKRGRLVSKN------------ 95
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ I+ ++ L PC EAEA+CA L + D S+D D +FG++
Sbjct: 96 ----AAAAQIELSRKLIELFSYPCHMAPGEAEAECAKLQQAGVVDAVMSNDVDALMFGSK 151
Query: 173 TVYRDI------WLGERGYVVCY--EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+ G +V Y E +D + K+ ++ +ALL G DYS GV
Sbjct: 152 VTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTKGMVLVALLSGGDYSPAGVALC 211
Query: 224 GPESACQIVKS 234
GP+ A +I ++
Sbjct: 212 GPKLAVEIARA 222
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R +I ++V DG P +K S +R +E + D+ ++
Sbjct: 64 LLGMFYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTERRTEAEKQRNDAVELGDEASV 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K + E + +EAK L +G+P L+ EAEAQCA L S D
Sbjct: 124 NKFERRLVKVTKEQN---EEAKRLVTLMGIPILDAPCEAEAQCAALAKAGKVFATVSEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + EM + + + G + L +LLG DY +RG
Sbjct: 181 DALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKKAFELIK 251
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 35/262 (13%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDK----- 51
MG+K+L+ I+ E+ + ++N ++V ID Q YR TD+
Sbjct: 1 MGIKSLYQIISENAPDAIKAGEIKNQFGRKVAIDAYVKTAQ------RYRASTDEEQLTN 54
Query: 52 ------LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL---------NSGSE 96
L G+F+R ++ ++V DG+ P +K +R ++
Sbjct: 55 ESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAK 114
Query: 97 VTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
T ++++K S + E + E K L +G+P ++ EAEAQCA+L E
Sbjct: 115 ETGTAEDVEKFSRRTVRVTREHNA---ECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKV 171
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
G S D D F A + R + E + ++ +D + LG + L +LLG
Sbjct: 172 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMEMTQFVDLCILLGC 231
Query: 215 DYSQGVRGLGPESACQIVKSVG 236
DY + +GP +A ++++ G
Sbjct: 232 DYLDPIPKVGPNTALKMIRDHG 253
>gi|327307022|ref|XP_003238202.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
gi|326458458|gb|EGD83911.1| hypothetical protein TERG_00194 [Trichophyton rubrum CBS 118892]
Length = 768
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNKR----VCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L D L ++ + HLQ R + +D+S W+ Q+Q P
Sbjct: 1 MGIPGLKDELGPGERISLARYSVGHLQRTRKPLRLAVDISIWLFQVQAAQGGANPA---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF RL LI+L IFV DG P R +N + Q + L R
Sbjct: 57 -LRTLFFRLTRLISLPIQPIFVFDG--PHRPDYKRGRLVNKNAAAAQIE--------LSR 105
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ FS PC EAEA+CA L + D S+D D +FG++
Sbjct: 106 KLIELFS--------------YPCHMAPGEAEAECAKLQQAGVVDAVMSNDVDALMFGSK 151
Query: 173 TVYRDI------WLGERGYVVCY--EMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+ G +V Y E +D + K+ +I +ALL G DYS GV
Sbjct: 152 VTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKVTLDTRGMILVALLSGGDYSPAGVALC 211
Query: 224 GPESACQIVKS 234
GP+ A +I ++
Sbjct: 212 GPKLAVEIARA 222
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 31/261 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQ---NKRVCIDLSCWIVQLQNVNKSYRPQTDKLF--- 53
MG+K L +L E K H ++ ++V +D S I Q + R + +L
Sbjct: 1 MGIKGLTALLAEHAPKAFQEHEMKTLFGRKVAVDASMSIYQFLI---AVRQKDGELLTND 57
Query: 54 -------LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK---- 102
L G F+R ++ +V DG P +K +R E +D++
Sbjct: 58 AGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDNEEAKE 117
Query: 103 -----NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
++D+ S + E + + + LGL +G+P + EAEAQCA L
Sbjct: 118 TGTAEDMDRFSRRTVKVTREHNEECR--RLLGL-MGIPFVVAPSEAEAQCAELARGGKVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSD 215
S D D FGA +YR + E E++ + G N L +LLG D
Sbjct: 175 AAGSEDMDTLTFGAPILYRHLTFSEARKTPISEINLQKALEGLEMNMSQFTELCILLGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y + ++G+GP+SA ++++ G
Sbjct: 235 YLEPIKGVGPKSALKLIREHG 255
>gi|354544778|emb|CCE41503.1| hypothetical protein CPAR2_800550 [Candida parapsilosis]
Length = 614
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 41/262 (15%)
Query: 1 MGVKNLWDILE-SCKKTLPLHHLQNK---------RVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ LW++L + + + L ++ RV ID +I + + S P+ D
Sbjct: 1 MGIPELWEVLRPAFDARITIDELVDQYITKFGRPPRVAIDAYIFIF---HADHSSIPEND 57
Query: 51 K--LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
K + + ++ AL+ LN ++ V DG + K + + + +K L+K+
Sbjct: 58 KETILTQNFMSKILALVGLNISVMVVFDGILKPDK--------SGAGKPSDHEKELEKLH 109
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
R SE I+ K + + ++ EAEAQCA L + D ++D D +
Sbjct: 110 --RTENFSEPKEFIQHLKDVLKLNSIEFVQATGEAEAQCAYLQKLGIVDFVITNDVDSLV 167
Query: 169 FGARTVYRDI----------------WLGERGYVVCYEMDDIERKLGFGRNSLITLALLL 212
FGA V R+ L ++ YV M +E G R+ L+ LA L
Sbjct: 168 FGATQVLRNYSRFVEDIGHSPTKKSATLKQKYYVTPVNMSKVEEITGLTRSRLVFLATLR 227
Query: 213 GSDYSQGVRGLGPESACQIVKS 234
DYS GV+ +G ++A + S
Sbjct: 228 RGDYSSGVKKMGIKNATNLALS 249
>gi|213404598|ref|XP_002173071.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
gi|212001118|gb|EEB06778.1| exonuclease I Exo1 [Schizosaccharomyces japonicus yFS275]
Length = 566
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 31/254 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWI---VQLQNVNKSYRPQTDKLFLRGL 57
MGVK L +L+ +K + K + +D W+ V ++ +TDK +++
Sbjct: 1 MGVKGLLGLLKDIQKPSHIEEFSGKTLGVDAYVWLHKGVFACAKELAFNIETDK-YIQYA 59
Query: 58 FHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR-------LNSGSEVTQDDKNLDKMSSL 110
HR+ L V DG KL T +R L G ++ + K M L
Sbjct: 60 MHRISMLTYYGVKPFVVFDGGPLPSKLGTEEKRRARRKEALELGKKLWNEGKRSQAMMHL 119
Query: 111 RRN------MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
R+ M + F+ +++ +P + EA+ Q L DG + DS
Sbjct: 120 SRSIDVTPEMANRFAMTLRQNN-------IPFVVAPYEADPQLVYLEKTGFIDGIITEDS 172
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIER-----KLGFGRNSLITLALLLGSDYSQG 219
D+ +FGARTV L G +DI R GF + L LA+ G DY+ G
Sbjct: 173 DMLIFGARTVL--FKLDNFGNCDVVRREDIPRLPNMSLQGFNDHMLRYLAIFSGCDYTDG 230
Query: 220 VRGLGPESACQIVK 233
+ G+G + A + ++
Sbjct: 231 IGGIGLKKAIRFIQ 244
>gi|317137497|ref|XP_001727761.2| rad2-like endonuclease [Aspergillus oryzae RIB40]
Length = 879
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 142/367 (38%), Gaps = 71/367 (19%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ RV +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINAIGPGERISLSKLAITHLERTARPIRVAVDISIWLFQVQAGRGGKNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL +AL +FV DG ++R +GS
Sbjct: 57 -LRTLFYRLLKFLALPVHPLFVYDGK----HKPPFKRGKATGS----------------- 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
GS + +I +K L P + EAEA+CA L + D S+D D +FG+
Sbjct: 95 TYGS--APIIGLSKILVDLFRFPRHDAPGEAEAECARLQRAGVVDAVMSNDVDALMFGST 152
Query: 173 TVYRDIWLGERG-------YVVCYEMDDIERK--LGFGRNSLITLALLLGSDY-SQGVRG 222
+ + E G ++ CYEM + R +I A+L G DY GV
Sbjct: 153 LTIMN-FSKESGSGTSAATHITCYEMGNFNSSSCSRLDRAGMILFAMLSGGDYLPSGVPK 211
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN- 281
G + A +I ++ +L+ + NS++ + K N E L E+ N
Sbjct: 212 CGSKLAAEIARAGFGEDLLEVL------------NSEETELNVKLNEWRERLQYELEANE 259
Query: 282 ----GTDHSLQR---ETPFSQVIDAYSNPKCY-SADSEAVHRVLAQHLFQHA---RLHQV 330
T H R P V+ Y+ P S D E + R L Q L +
Sbjct: 260 SGYFQTKHKAVRIPESFPDRTVLSYYAKPIVSDSKDLEVLQRRLENAWDQEIDALELRRF 319
Query: 331 CAQFFQW 337
A F+W
Sbjct: 320 AADTFEW 326
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN----SGSEVTQDDKNLDKMSS 109
L G+F R + +F+ DG P +K T + R + S + Q K D +
Sbjct: 59 LSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREESKEKWDQAKKEGDLAGA 118
Query: 110 LRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R M S + ++ A+ L +G+P ++ E EAQ A + L+ D S D D
Sbjct: 119 FRYAMSSTAIDAYILSSARQLIQLMGLPVVDAPSEGEAQGAYMVLKGDADYVVSQDYDTL 178
Query: 168 LFGARTVYRDIWL-GER---GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFG + R++ + G+R G + + + D+ L R LI +A+L G+D++
Sbjct: 179 LFGTPVLVRNLTISGKRRLHGRQITVQPERIVLSDVLSTLDITREQLIEIAILTGTDFNP 238
Query: 219 GVRGLGPESACQIVKS 234
G+RG+G ++ + +KS
Sbjct: 239 GIRGIGAKTGLKKIKS 254
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 21/261 (8%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSC----WIVQLQNVNKSYRPQTD-- 50
MGVK L +++ K L +L ++V ID S +++ ++ + D
Sbjct: 1 MGVKGLNQLIKEHAPDAFKEYQLKNLFGRKVAIDASMCLYQYLIAVRQQDGQQLTSEDGE 60
Query: 51 -KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R L+ ++V DG P +K +RL + + ++L + +
Sbjct: 61 TTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGT 120
Query: 110 LRRNMGSEFSCMIK------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ M E + EAK L +G+P + EAEAQCA L S D
Sbjct: 121 VEELMKYEKRTVRASREQNDEAKKLLELMGIPYIVAPSEAEAQCAELARAGKVFAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVR 221
D + + + R + + E + ++D + + L R++ + L +LLG DY + ++
Sbjct: 181 MDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVKSVG--DNVV 240
G+GP +A +++K G DN+V
Sbjct: 241 GVGPVTAFKLIKEHGSLDNIV 261
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ + ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 IKNFFGRKVAIDASMCLYQFLIAVRSEGAQLAAVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG+ P +K +R E + D+ ++K + + E S +
Sbjct: 83 YVFDGAPPDMKSGELAKRAERRDEAEKALKAATEAGDEAQIEKFNRRLVRVTKEHS---R 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + + L I L +L+G DY + +RG+GP+ A +++KS D +
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIRGVGPKRAIELIKSYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L+ I + K + E W++K
Sbjct: 260 LENIDTN--------KYAVPENWNYK 277
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K+V ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKVAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSC 120
+V DG PA K +R + E + + N+++ +
Sbjct: 71 AGIKPAYVFDGKPPAFKKKELEKRREAREEAEERWREALERGNIEEARKYAQRATRVNEA 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
++++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LVEDAKKLLELMGIPVIQAPSEGEAQAAYIAAKGAVYASASQDYDSLLFGAPRLVRNLTI 190
Query: 181 -------GERGYVVCYE----MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+ YV ++++ + L R LI LA+L+G+DY+ GV+G+GP+ A
Sbjct: 191 TGKRKLPGKDVYVDVKPELIVLEEVLKALKIDREKLIELAILVGTDYNPGGVKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IV+ D
Sbjct: 251 LEIVRHSKD 259
>gi|393908823|gb|EFO27494.2| hypothetical protein LOAG_00986 [Loa loa]
Length = 880
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P + EAEAQC L L G S DSD++ FGA VY++++ ++ + Y M+
Sbjct: 507 GIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMF-NQKRRLQMYSME 565
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
I +LG R + +ALL G DY+ G+ G+G +A +++
Sbjct: 566 TIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELI 605
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG++ LW +LE + + L L+ KR+ +D+S W+ Q ++ L + R
Sbjct: 1 MGIQGLWQVLEPVAEPVILESLEGKRLAVDISIWLHQAAYGYSEHQHNARYPHLSLVLRR 60
Query: 61 LRALIALNCGLIFVSDG-SIPAIKLSTYRRR 90
L L+ +FV DG ++P K R R
Sbjct: 61 LAKLLFYKIRPLFVFDGPNVPIFKRKLLRDR 91
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 43/270 (15%)
Query: 1 MGVKNLWDIL-ESCKKTLP---LHHLQNKRVCIDLSCWIVQL----------QNVNKSYR 46
MG+K L L ++ K++ + L KRV ID S WI Q N+ S
Sbjct: 1 MGIKGLTKFLADNAPKSIQQQGIGSLLGKRVAIDASMWIYQFLAAIREGSQWGNLTNSSG 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSE 96
T + G+ R L+ +FV DG+ P +K +R L E
Sbjct: 61 ESTS--HINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELEKAQE 118
Query: 97 VTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
+ D+ L K S+R ++ +++ K L LG+PC++ EAEAQCA L + L
Sbjct: 119 I--GDEELIKKQSVRTIHVTK--KQVEDVKKLLGFLGMPCIDAPSEAEAQCAELCKDGLV 174
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGE-------------RGYVVCYEMDDIERKLGFGRN 203
G + D+D FG + + E + + ++ I +L +
Sbjct: 175 YGVVTEDADSLTFGTPIQIKQLNFSESSNKITDKSPSKQKNGMQIIKLSLILSELDINMD 234
Query: 204 SLITLALLLGSDYSQGVRGLGPESACQIVK 233
I L +L G DY +RG+G +A +++K
Sbjct: 235 QFIDLCILSGCDYCGTIRGIGTSTAYKLLK 264
>gi|312067080|ref|XP_003136574.1| hypothetical protein LOAG_00986 [Loa loa]
Length = 882
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
G+P + EAEAQC L L G S DSD++ FGA VY++++ ++ + Y M+
Sbjct: 509 GIPYVIAPGEAEAQCCELERLGLVHGIISDDSDVWSFGAAMVYKNMF-NQKRRLQMYSME 567
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIV 232
I +LG R + +ALL G DY+ G+ G+G +A +++
Sbjct: 568 TIHNQLGLSRWEAVQIALLSGGDYTSGLGGVGVVAALELI 607
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG++ LW +LE + + L L+ KR+ +D+S W+ Q ++ L + R
Sbjct: 1 MGIQGLWQVLEPVAEPVILESLEGKRLAVDISIWLHQAAYGYSEHQHNARYPHLSLVLRR 60
Query: 61 LRALIALNCGLIFVSDG-SIPAIKLSTYRRR 90
L L+ +FV DG ++P K R R
Sbjct: 61 LAKLLFYKIRPLFVFDGPNVPIFKRKLLRDR 91
>gi|449304737|gb|EMD00744.1| hypothetical protein BAUCODRAFT_29098 [Baudoinia compniacensis UAMH
10762]
Length = 962
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 99/226 (43%), Gaps = 38/226 (16%)
Query: 20 HHLQNKR---VCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
H+ + R + ID+S W+ Q+Q+ P LR ++RL L+ LN +FV D
Sbjct: 25 HYATHSRPLILAIDISIWLFQIQSGKGGSNPA-----LRTFYYRLLRLLTLNIWPLFVFD 79
Query: 77 GSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPC 136
G P L ++R G +R EF AK L G P
Sbjct: 80 G--PNKPL--FKRNKKVGG------------PGVRVATVPEFL-----AKQLLKEFGFPW 118
Query: 137 LEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG------YVVCY- 189
EAEA+CALL E + D S D D +FG+ +R W E +V Y
Sbjct: 119 HIAPGEAEAECALLQREGVVDAVLSEDVDTLMFGSGVTFRS-WSAEGSTTKSPTHVSVYR 177
Query: 190 EMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
E + +R G R+ +I +AL+ G DY +G+ G GP+ AC ++
Sbjct: 178 EEETKQRSRGLDRDGMILVALMSGGDYLPEGIPGCGPKVACDAARA 223
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 33/253 (13%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LRGLFHRLRAL 64
+K + L +L K+V +D + Q ++ +P L L G F+R L
Sbjct: 11 RKEIELENLHGKKVAVD--AFNAMYQFLSTIRQPDGTPLMDSKGRITSHLSGFFYRTINL 68
Query: 65 IALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLDKMSSLRRNMGS 116
+ +V DG P K +R + E + + D K ++R +
Sbjct: 69 MEAGIKPAYVFDGKPPEFKKKEIEKRKEAREEAEEKWQEALEKGDLEEAKKYAMRATRVN 128
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
E +I +AK L +G+P ++ E EAQ A + + S D D LFGA + R
Sbjct: 129 E--ELISDAKKLLELMGIPVVQAPSEGEAQAAYMAAKGKVYASASQDYDSLLFGAPKLVR 186
Query: 177 DIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLG 224
++ + R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+G
Sbjct: 187 NLTITGRRKLPGKEVYVEVKPELIVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIG 246
Query: 225 PESACQIVKSVGD 237
P+ A IVK + D
Sbjct: 247 PKKALMIVKRIND 259
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 26/260 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKL-----F 53
MGV +L D++ + TL L K + ID + Q ++ + P D
Sbjct: 1 MGV-DLTDLVPEHETTL--VDLNGKVIAIDAFNTLYQFLSIIRQMDGTPLVDDKGEVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDDKNLDKMSSLR 111
L G+ +R+ L+ +FV DG P +K T RR + + + +
Sbjct: 58 LSGIIYRVTNLVEQGIKPVFVYDGKPPVLKAETIKARREVREAARQMYEAARAAGSAEAY 117
Query: 112 RNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ + S +IK++K L +G+P L E EAQ A + + D S D D L
Sbjct: 118 KYAQASTSINAQIIKDSKELLGYMGMPFLIAPSEGEAQAAYMVQKGAADFVGSQDYDSLL 177
Query: 169 FGARTVYRDIWLG------ERGYVV-----CYEMDDIERKLGFGRNSLITLALLLGSDYS 217
FGA + R++ + RG V E+ ++ L R LI + +L+G+D++
Sbjct: 178 FGAPRMVRNVTITGRRKIPRRGVYVDVKPQIVELKEVLETLEVTREQLIDMGILVGTDFN 237
Query: 218 QGVRGLGPESACQIVKSVGD 237
G+ +GP++A ++VK D
Sbjct: 238 PGIYKVGPKTALKLVKKHPD 257
>gi|156049863|ref|XP_001590898.1| hypothetical protein SS1G_08639 [Sclerotinia sclerotiorum 1980]
gi|154693037|gb|EDN92775.1| hypothetical protein SS1G_08639 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1042
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 74/282 (26%)
Query: 1 MGVKNLWDILESCKKTLPL---------HHLQNKRVCIDLSCWIVQLQNVNKS---YRPQ 48
MG+ LWD++ CK+ + L HH + R+ +D + W +L NK +
Sbjct: 1 MGIPGLWDLIADCKEIISLAELATTHFEHHKRPLRIAVDEATWRHKLFISNKGKLCKKYS 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
T L R L + L+ LN LIFV+DG + + G+ V + N
Sbjct: 61 TIHLNERNLITFVLRLLNLNIQLIFVADGPQKPCE-----KNKGKGAGVWKFKNN----- 110
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+++EA L LGV + EAEA+CA+L D ++ D D +
Sbjct: 111 ------------VLQEALRL---LGVKWHDAPGEAEAECAVLQRRGTVDWVWTEDGDALM 155
Query: 169 FGARTVYR------------------------------DIWLGERG------YVVCYEMD 192
FG + R +W +RG VV Y D
Sbjct: 156 FGCGGLVRFCYGGEGEGEGEENENENEKENGKGKAKSSGVWTAKRGGMKDLDRVVLYRAD 215
Query: 193 DIERKL-GFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
I+ K GF R L+ LL G DY +G++ G + ++++
Sbjct: 216 TIQAKHPGFDREGLVLFVLLSGGDYGKGLQDCGVGRSSKVLE 257
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L+G+ R LI ++V DG P +K + +RL E + D + +
Sbjct: 33 LQGVLSRTVRLIESGVKPVYVFDGKPPEMKGAELAKRLERREEAQKELEKAIESGDQEAI 92
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
DK S RR + + ++E K L LGVP ++ EAEA+CA LN L D + D
Sbjct: 93 DKFS--RRTVHLD-KTQVEECKQLLECLGVPYVDAPCEAEAECAALNKAGLVDAMATEDM 149
Query: 165 DIFLFGARTVYRDIWLGERG---YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D F + R + G +G + Y++ + K G R + +L+G DY ++
Sbjct: 150 DSLAFATPQLIRHLSYGAKGDDLLQIDYKI--MMEKSGLTREEFVDFCILMGCDYCDTIK 207
Query: 222 GLGPESACQIVK 233
G+G + A +++K
Sbjct: 208 GIGKKHAYELIK 219
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 40/293 (13%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+KNL+ IL E + ++N ++V ID S I Q +N+S
Sbjct: 1 MGIKNLFQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------T 98
+ L G+F+R ++ ++V DG+ P +K +R E T
Sbjct: 61 TS---HLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKET 117
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + E + L +GVP + EAEAQCA+L
Sbjct: 118 GTAEDIEKFSRRTVRVTREHNA---ECQKLLRLMGVPFIIAPTEAEAQCAVLAKGGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + R + E+ E +D + LG RN + L +LLG DY
Sbjct: 175 AASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK---RAKNSKKEGWSFK 266
V +GP +A ++++ ++ L+ + + ++K ++K + E W F+
Sbjct: 235 LDPVPKVGPSTALKLIR---EHKTLEGV----VDYIKNDPKSKYTLPEDWPFR 280
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 29/266 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ + ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 IKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + D+ +DK + + E S +
Sbjct: 83 YVFDGQPPDLKSGELAKRAERREEAEKALKAATEAGDEAEIDKFNRRLVRVTKEHS---R 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSCKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD-NVV 240
+ V + D + + L I L +L+G DY + ++G+GP+ A +++KS D +
Sbjct: 200 RKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCESIKGVGPKRAIELIKSYRDIETI 259
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFK 266
L+ I + +K E W++K
Sbjct: 260 LENIDT--------SKYPVPENWNYK 277
>gi|403416579|emb|CCM03279.1| predicted protein [Fibroporia radiculosa]
Length = 663
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDI 166
S RR M + E+K + ++GVPC+E G EAEA + L L D S D+D+
Sbjct: 447 SFRRRMHPPTAETYIESKEILAAMGVPCIEPTGPYEAEALASALVLNGYADYVASEDTDV 506
Query: 167 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
++ A + R+I G +V D+ L R S + ALLLG+D+SQ ++ +GP
Sbjct: 507 LVYDAPLI-RNI-ANRNGPLVVISGTDVRTVLQLDRASFVDFALLLGTDFSQRIKNIGPA 564
Query: 227 SACQIVKSVGDNVVLQRIASEGLSFVKR 254
A + +++ G ++R+ E + R
Sbjct: 565 RALKFIRAHGS---IERVLEEERRYPPR 589
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 18/255 (7%)
Query: 1 MGVKNLWD-ILESCKKTLPLHHLQN---KRVCIDLSC----WIVQLQNVNKSYRPQTDKL 52
MG+K L IL+ K ++ L+N ++V ID S +++ L+N + ++
Sbjct: 1 MGIKGLSQLILDEAKDSVKEDQLKNYFGRKVAIDASMAMYQFLIALKNTGMDLTDKDGEV 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE------VTQDDKNL 104
L+GL R ++ +V DG P +K +R E + Q++ +
Sbjct: 61 TNHLQGLLARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQKEAMEQFALAQEEGDE 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+KM + + K L +GVP +E EAEAQCA L L + D
Sbjct: 121 EKMVMWNKRTTRMTKEQSNDGKKLLRLMGVPVVEAPGEAEAQCAELCKGGLVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D + + R + E + + + + LG + I + +L G DY+ ++G
Sbjct: 181 DALTYATPVLARHLTFSEARKQPIQEFTFKQVIEGLGVTVDQFIDICILCGCDYTDSIKG 240
Query: 223 LGPESACQIVKSVGD 237
+GP+ A ++K G+
Sbjct: 241 IGPKKALAMIKKYGN 255
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LG R L+ +A+L G+D+++GVRG+GP++A + V+ GD
Sbjct: 202 AATLGDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVREHGD 247
>gi|402220454|gb|EJU00525.1| PIN domain-like protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 557
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 104/274 (37%), Gaps = 64/274 (23%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MG+ LWDIL K+ L HL + R+ ID S W P
Sbjct: 1 MGIPGLWDILRPAGKSRSLTHLTVVDGFLRNSSGKRAYRIGIDASIWFFHANGGQGGENP 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
+ LR L+ R L++L +FV DG A++ S R +
Sbjct: 61 E-----LRTLYFRCCRLLSLPILPLFVFDG---ALRPSQKRGK----------------- 95
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
++G ++ + + + G EAEA+ A N + D S D D F
Sbjct: 96 -----HIGKNQHWLVSGMREIIDAFGFEWWTAPGEAEAELAYFNDIGVIDAILSDDVDNF 150
Query: 168 LFGARTVYRDIWLGERG-----------------YVVCYEMDDIERK--LGFGRNSLITL 208
LFGA+ V R+ G +VV Y DIE +G R LI +
Sbjct: 151 LFGAKVVIRNPSATLTGTQTHVRKTGQEEKDDGQHVVIYRAADIESHPDVGLRRGGLILI 210
Query: 209 ALLLGSDY-SQGVRGLGPESACQIVK-SVGDNVV 240
L+ G DY + G+ G+G A + K GD +V
Sbjct: 211 GLMSGGDYNTTGLMGIGTSIAHALAKCGYGDQLV 244
>gi|294657807|ref|XP_460107.2| DEHA2E18524p [Debaryomyces hansenii CBS767]
gi|199432966|emb|CAG88374.2| DEHA2E18524p [Debaryomyces hansenii CBS767]
Length = 840
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 30/258 (11%)
Query: 1 MGVKNLWDILESC---KKTLPLH-------HLQNKRVCIDLSCWIVQLQNVNKSYRPQTD 50
MG+ +LW IL + P+ + + R+ ID +I Q + N +
Sbjct: 1 MGITDLWSILAPGFDPRIPFPIFVSEFINKYGRTPRIAIDAYMFIFQSNHSNLQGAEVEN 60
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK--NLDKMS 108
+ +R + +L L +L+ + V DG KL R + ++ DD+ K+S
Sbjct: 61 DIQVRNIMSKLMYLTSLSVSYVVVFDGRYKPQKL---RHNEDVYHCISYDDQLNGFKKIS 117
Query: 109 SLRRNMGSEFSC--MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
N + C +I + + ++ EAEA+CA+L + D + D+D+
Sbjct: 118 FKNENYIEDSLCTPLINRLIEIFRVNKIDFIQSPGEAEAECAMLQKFGVVDFVLTKDTDV 177
Query: 167 FLFGARTVYRDIWLGERG-------------YVVCYEMDDIERKLGFGRNSLITLALLLG 213
F+FGA V R+ E+ YV +M + ++ G LI +A L G
Sbjct: 178 FVFGATKVLRNFSRSEQDLSVSSTSNAVKDYYVTPVDMTKVAKETGLDYQRLILVATLRG 237
Query: 214 SDYSQGVRGLGPESACQI 231
DYS G+ +G A +I
Sbjct: 238 GDYSNGMNNIGITRATKI 255
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K L +L E C L ++N ++V ID S + Q Q +
Sbjct: 1 MGIKGLNKLLMEHCPAALRSSEIKNFGGRKVAIDASMSLYQFVIAVRQADGQQLTNENGE 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK-----------------LSTYRRR 90
T L G+F+R ++ ++V DG P +K + +++
Sbjct: 61 TTSHLM--GMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKERREEALKKIEELKQQ 118
Query: 91 LNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL 150
+ G E + + + ++ + EAK L +G+P +E EAEAQCA L
Sbjct: 119 VEDGEEGEETKEAQEDVTRFEKRTVRVTPEQNDEAKKLLTLMGIPIVEAPCEAEAQCAKL 178
Query: 151 NLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITL 208
S D D FG+ + R + E + E++ I L I L
Sbjct: 179 AEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEAKKMPISEINFAKILEGLEMTHAQFIDL 238
Query: 209 ALLLGSDYSQGVRGLGPESACQIVKSVG 236
+LLG DY+ +RG+GP++A +++K G
Sbjct: 239 CILLGCDYADTIRGVGPQTALKLMKEHG 266
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 103/253 (40%), Gaps = 24/253 (9%)
Query: 1 MGVKNL----WDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L D+ K + + ++V ID S + Q ++ Q +
Sbjct: 1 MGIKGLSQLIADLAPFAVKEGEIKNFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK---- 106
L G F+R L+ ++V DG P +K +R E K LDK
Sbjct: 61 TSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEA---QKALDKATEA 117
Query: 107 -----MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ R + EAK L +GVP ++ EAEAQCA L +
Sbjct: 118 GVTEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKVYATAT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ + R + E + V + D I + L R+ I L +LLG DY
Sbjct: 178 EDMDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGCDYCDS 237
Query: 220 VRGLGPESACQIV 232
+RG+GP+ A +++
Sbjct: 238 IRGIGPKKAVELI 250
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 21/255 (8%)
Query: 1 MGVKNLWDIL-ESCKKTL---PLHHLQNKRVCIDLSCWIVQLQNVNKS-----YRPQTDK 51
MG+K L +L E+C K + PL + +KR+ ID S + Q +S +
Sbjct: 1 MGIKQLSKLLKENCAKGIKERPLAYYSSKRIAIDASMSMYQFLIAVRSDGSSLGNEDSPT 60
Query: 52 LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD--------DKN 103
L G F+R ++ L ++V DG P +K+ +R + ++ DK
Sbjct: 61 SHLVGFFYRTIRMVELGIIPVYVFDGVPPEVKMKELEKRSERRAAADKEYKEASEMGDKK 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L +M R+ + ++E K L +G+P EAEA CA L + G + D
Sbjct: 121 LMEMYDKRKTKVT--GMHVEECKRLLGLMGIPFETAPSEAEAYCAFLCKKKAVYGVATED 178
Query: 164 SDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG+ V R+ + + +V Y + ++ L I L +LLG DY ++
Sbjct: 179 MDALTFGSPVVLRNFSGSQSRKLPIVEYNLPELLESLSLEHEEFIDLCILLGCDYCGTLK 238
Query: 222 GLGPESACQIVKSVG 236
G+GP+ A ++K G
Sbjct: 239 GIGPKRALGLIKKHG 253
>gi|83770789|dbj|BAE60922.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870160|gb|EIT79346.1| hypothetical protein Ao3042_04184 [Aspergillus oryzae 3.042]
Length = 708
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 161/420 (38%), Gaps = 74/420 (17%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ L + HL+ RV +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINAIGPGERISLSKLAITHLERTARPIRVAVDISIWLFQVQAGRGGKNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL +AL +FV DG ++R +GS
Sbjct: 57 -LRTLFYRLLKFLALPVHPLFVYDGK----HKPPFKRGKATGS----------------- 94
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
GS + +I +K L P + EAEA+CA L + D S+D D +FG+
Sbjct: 95 TYGS--APIIGLSKILVDLFRFPRHDAPGEAEAECARLQRAGVVDAVMSNDVDALMFGST 152
Query: 173 TVYRDIWLGERG-------YVVCYEMDDIERK--LGFGRNSLITLALLLGSDY-SQGVRG 222
+ + E G ++ CYEM + R +I A+L G DY GV
Sbjct: 153 LTIMN-FSKESGSGTSAATHITCYEMGNFNSSSCSRLDRAGMILFAMLSGGDYLPSGVPK 211
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN- 281
G + A +I ++ +L+ + NS++ + K N E L E+ N
Sbjct: 212 CGSKLAAEIARAGFGEDLLEVL------------NSEETELNVKLNEWRERLQYELEANE 259
Query: 282 ----GTDHSLQR---ETPFSQVIDAYSNPKCY-SADSEAVHRVLAQHLFQHA---RLHQV 330
T H R P V+ Y+ P S D E + R L Q L +
Sbjct: 260 SGYFQTKHKAVRIPESFPDRTVLSYYAKPIVSDSKDLEVLQRRLENAWDQEIDALELRRF 319
Query: 331 CAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPLQKVPVKCPITGIIKSR 390
A F+W ++ +AE + LR + A L VP+ + + KSR
Sbjct: 320 AADTFEWNYRSGARKVIRLLAEPLVSYRLRLRKDLTAFPFRLSESDVPM---LQKVYKSR 376
>gi|389741790|gb|EIM82978.1| hypothetical protein STEHIDRAFT_171105 [Stereum hirsutum FP-91666
SS1]
Length = 952
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 106/265 (40%), Gaps = 63/265 (23%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK------------RVCIDLSCWIVQLQNVNKSYRPQ 48
MGV LWD++ +T + + + R+ ID S W K P+
Sbjct: 1 MGVPGLWDVVHPAGRTRSMTQVATEAFVENRGGKRGYRIGIDASIWYHHASFSKKGESPE 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSE-VTQDDKNLDK 106
LR LF +L L L +FV DG P +K + R +GS +T K L +
Sbjct: 61 -----LRFLFFKLCRLTRLPLIPLFVFDGCERPKVKRGS--RMGKAGSHALTAGFKKLLE 113
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+ + M ALG EAEA+ A LN + + D S D D
Sbjct: 114 LFGMEWRM------------ALG------------EAEAELAWLNRQGVIDAIISDDVDA 149
Query: 167 FLFGARTVYRDIWL--------------GER--GYVVCYEMDDIER--KLGFGRNSLITL 208
+FGA ++ L G+R +V Y DDI+R + R L+ +
Sbjct: 150 IVFGAVNTMKNSGLLLSGNKSKPALDSNGKRSASHVWSYNADDIQRNPNVDLSRAGLVLI 209
Query: 209 ALLLGSDYSQGVRGLGPESACQIVK 233
ALL G DYS GV +GP A + +
Sbjct: 210 ALLSGGDYSGGVSKIGPTVAHGLAR 234
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 41/257 (15%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L +RV ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGRRVAIDAFNAIYQFLSTIRQRDGTPLMDSQGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
++ DG P K + L G ++ M + R
Sbjct: 71 AGIKPAYIFDGKPPDFKKRELEKRREAREEAEEKWYEALERGD---LEEAKKYAMRATRV 127
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
N G +I +AK L +G+P ++ E EAQ A + + S D D LFGA
Sbjct: 128 NEG-----LINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSLLFGAP 182
Query: 173 TVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GV 220
+ R++ + R G V E ++++ ++L R LI +A+L+G+DY+ G+
Sbjct: 183 KLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKLIEMAILVGTDYNPGGI 242
Query: 221 RGLGPESACQIVKSVGD 237
+G+GP+ A IVK D
Sbjct: 243 KGIGPKKALTIVKRTKD 259
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 13/180 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GLF+R A + + +FV DG P K + +R S SS N
Sbjct: 55 LAGLFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWS----------SSQSPN 104
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
GS F+ +E L +GVPC++ EAEA CA L + S D D FG
Sbjct: 105 TGSAFN---QECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTV 161
Query: 174 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ R + + Y + + L + L +LLG DY + GLGP A +++K
Sbjct: 162 LLRQLNAKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIK 221
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R ++ ++V DG P +K +R SE + ++ N+
Sbjct: 64 LMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + E K L + +G+P +E EAEA CA L + D
Sbjct: 124 EKFSKRLVKVTQQHT---DECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + ++ + + LG + L +LLG DY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAVELIK 251
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 18/212 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQDD---KNLDKMS 108
L G+ +R LI +FV DG+ P K T RR++ + D+ K L+K +
Sbjct: 58 LSGILYRFTNLIEEGIRPVFVFDGTPPDFKSKTLDKRRKVRETAHSRWDEAREKGLEKEA 117
Query: 109 SLRRNMGSEF-SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ S +I+ +K L +G+P ++ E EAQ A + + S D D
Sbjct: 118 YKYAQASVKLDSYVIESSKTLLSIMGIPVVQAPCEGEAQAAHMVKSGDANYVASQDYDSL 177
Query: 168 LFGARTVYRDIWL-------GERGYV-VCYEMDDIERKLG---FGRNSLITLALLLGSDY 216
LFGA V R+I + G+ YV V E+ D+E LG L+ +AL +G+DY
Sbjct: 178 LFGAPFVIRNIAITGKRKLPGKDAYVDVKPEVIDLEHSLGQMGITHPQLVDIALCVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQRIASE 247
+ G+ +G + A ++VK GD VL+++ E
Sbjct: 238 NNGLENIGQKRALELVKKHGDIESVLRKLGKE 269
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 22/284 (7%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K L+ ++ E + ++N ++V ID S +++ +++ + T +
Sbjct: 1 MGIKQLYHVIAEEAPDAIKTGEIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL------NSGSEVTQDDKNL 104
L G+F+R ++ ++V DG+ P +K +R N +E ++
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKNEANEQAEEAKETGTA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+++ R +E + L +G+P + EAEAQCA+L S D
Sbjct: 121 EEVEKFSRRTVRVTREHNEECRRLLKLMGIPYIIAPTEAEAQCAVLARAGKVYAAASEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D F A + R + E+ E +D LG R I L +LLG DY +
Sbjct: 181 DTLCFNAPILLRHLTFSEQRKEPIQEIHLDKTLEGLGMDRTQFIDLCILLGCDYVDPIPK 240
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+GP +A ++++ G L+++ E + + + S E W +K
Sbjct: 241 VGPNTALKLIREHG---TLEKVV-EFIENDPKKRYSLPEDWPYK 280
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R ++ ++V DG P +K +R SE + ++ N+
Sbjct: 64 LMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHLQEAQEAGEEANI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + E K L + +G+P +E EAEA CA L + D
Sbjct: 124 EKFSKRLVKVTQQHT---DECKKLLMLMGIPYVEAPGEAEASCATLVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + ++ + + LG + L +LLG DY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLGCDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAVELIK 251
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 29/251 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L L K+V ID + Q + + P D L G F+R L+
Sbjct: 11 RKEIELERLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLDKMSSLRRNMGSEF 118
+V DG PA K +R + E + + D K ++R +E
Sbjct: 71 AGIKPAYVFDGEPPAFKRRELEKRREAREEAEEKWHEALERGDIEEAKKYAMRATKLNE- 129
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+I++AK L +GVP ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 -TLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMASKKKVYASASQDYDSLLFGAPRLVRNL 188
Query: 179 WLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 226
+ R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 189 TITGRRKLPGKNVYVEVKPELIILEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPK 248
Query: 227 SACQIVKSVGD 237
A IVK D
Sbjct: 249 KALTIVKRSKD 259
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 121/245 (49%), Gaps = 15/245 (6%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQ-LQNVN-KSYRPQTDKL-----FLRGLFHRLRALIA 66
KK +P+ +L K V ID + Q L ++ + P +K G+F++ ++
Sbjct: 11 KKEIPIKYLSGKTVAIDGMNVLYQFLSSIRLRDGSPLRNKKGEITSTYNGIFYKTIYMLE 70
Query: 67 LNCGLIFVSDGSIPAIKLSTY--RRRLNSGSE----VTQDDKNLDKMSSLRRNMGSEFSC 120
+ ++V DG P +K T RR++ ++ ++ +N+++M + M
Sbjct: 71 NDVTPVWVFDGKPPKLKEKTREERRKMREKAKEEFIKAKEIENIEEMQKYAKRMNFLTKD 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++ +K L +G+P + E E Q + + + S D D L+GA V R++
Sbjct: 131 IVENSKKLLDLMGIPYVNAPAEGEGQASYMAKKGDVFCVVSQDYDALLYGAPRVVRNL-T 189
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVGDNV 239
+ + E+ ++ +LG + LI +A+L+G+DY+ +GV+G+GP+ A +I KS +
Sbjct: 190 ATKEELELIELKEVLNELGISHDDLIDMAILIGTDYNPKGVKGIGPKKALEIAKSKNKEL 249
Query: 240 VLQRI 244
L+ I
Sbjct: 250 YLKAI 254
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT--DKL-- 52
MG+K L +L K + + + ID S + Q + + T D+
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLST-YRRRLNSGSEVTQDDKNLDKMS 108
+ G F+R LI I+V DG P +K ++R+ N+ Q DK L++
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLDKALEEGD 120
Query: 109 SLR-RNMGSEFSCMIKE----AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + + M KE K L +G+PC+E EAE CA L C + D
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGTCAALVKAGKCYATATED 180
Query: 164 SDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D G+ V R + + + Y + I + GF I L +LLG DY + ++
Sbjct: 181 MDALTLGSEHVVRKFSANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVK 233
G+GP +A ++++
Sbjct: 241 GVGPITAFELIQ 252
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L ++ + + + ++V ID S + Q QN + ++ +
Sbjct: 1 MGIKGLTALISDEAPGAIREMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT------QDDKN 103
L G F+R +I ++V DG+ P +K ++R E +D +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLKKRFGRREEAREQEEEQKDVAD 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
++KM L R +E + L +G+PC+ EAEAQCA L S D
Sbjct: 121 VEKMDQLARRQVRPTRQHNEEVRQLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRN--SLITLALLLGSDYSQGVR 221
D FG + + + E+ + +++D + G + I L +LLG DY ++
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMDMPQFIDLCILLGCDYLDPIK 240
Query: 222 GLGPESACQIVK 233
G+GP++A ++++
Sbjct: 241 GIGPKTALKLIR 252
>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP6]
gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP6]
Length = 339
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 33/263 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV +L ++L+ +K + + L + V ID + Q ++ + P D+
Sbjct: 4 MGV-DLGELLK--RKQIEIKDLSGRWVAIDAFNTLYQFLSIIRQRDGTPLMDRQGRVTSH 60
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GL +R LI + FV DG P K T R SE+ + +
Sbjct: 61 LSGLLYRTTNLIEAGVKVAFVFDGEAPTFKAVTLAER----SEIRDKAAWAWEEARAAGE 116
Query: 114 MGSEF--------SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
G ++ S +I++ + L L++G+P ++ E EAQ A + D S D D
Sbjct: 117 DGFKYAQAASRINSEIIEDGRRLILAMGLPVIQAPSEGEAQAAYMAARGDVDYAGSQDYD 176
Query: 166 IFLFGARTVYRDIWL-GERG------YV-VCYEMDDIE---RKLGFGRNSLITLALLLGS 214
LFGA V R++ + G+R YV V E+ ++E LG L+ + ++ G+
Sbjct: 177 SLLFGAPLVVRNLAITGKRKLPRKNIYVDVEPEVINLEVGLANLGITHKQLVEIGIMCGT 236
Query: 215 DYSQGVRGLGPESACQIVKSVGD 237
D++ G+ +GP++A ++++ GD
Sbjct: 237 DFNSGLERVGPKTALKLIREKGD 259
>gi|453086627|gb|EMF14669.1| hypothetical protein SEPMUDRAFT_63272 [Mycosphaerella populorum
SO2202]
Length = 788
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 58/313 (18%)
Query: 21 HLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIP 80
H + R+ ID+S W+ Q+ P LR ++RL L++LN +FV DG
Sbjct: 29 HGRPLRLAIDVSIWLFQILASKGGSNPA-----LRTFYYRLLRLLSLNIHPLFVFDGP-- 81
Query: 81 AIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGV 140
T++R G +R EF AK L G P
Sbjct: 82 --NKPTFKRNKRVGG------------PGVRVASVPEFL-----AKELLRKFGFPWHVAP 122
Query: 141 EEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-RGYVVC----YEMDDIE 195
EAEA+CALL E + D S D D +FG+ ++R+ W E +G V Y ++
Sbjct: 123 GEAEAECALLQREGVVDAVLSEDVDTLMFGSGVLWRN-WTAEGKGKVPTHCSVYNAKAVK 181
Query: 196 RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKR 254
K G + ++ +AL+ G DY +G+ G GP+ C ++ E + ++
Sbjct: 182 EKSGLDKEGMVLVALMSGGDYIVEGIPGCGPKVGCDAARA--------GFGKELCALARK 233
Query: 255 AKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRET--------PFSQVIDAYSNPKCY 306
S + W E L EIN N + ++ + P +V+ Y++P C
Sbjct: 234 RDVSGLKIW-------REKLQHEINTNESKFFSRKSSKLVIPDDFPDREVLGYYTDP-CV 285
Query: 307 SADSEAVHRVLAQ 319
S E V R+ A+
Sbjct: 286 ST-VEKVARLKAE 297
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 136/306 (44%), Gaps = 31/306 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSC----WIVQLQNVNKSYRPQTDKL 52
MG+K+L+ I+ E+ + ++N ++V ID S +++ +++ + +T +
Sbjct: 125 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGET 184
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------- 101
L G+F+R ++ ++V DG+ P +K +R SE +
Sbjct: 185 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTA 244
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ ++K S + E + +E K L +GVP ++ EAEAQCA+L S
Sbjct: 245 EEVEKFSRRTVRVTREHN---EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAAS 301
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L R + L +LLG DY
Sbjct: 302 EDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDP 361
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
+ +GP +A ++++ G L+++ E + + K + E W +K + L + +
Sbjct: 362 IPKVGPNTALKLIRDHGS---LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPD 414
Query: 280 VNGTDH 285
V DH
Sbjct: 415 VRNADH 420
>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
Length = 648
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + L + + ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG------------ERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|453086897|gb|EMF14938.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 672
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 136/327 (41%), Gaps = 66/327 (20%)
Query: 1 MGVKNLWDIL---------ESCKKTLPLHHLQNKRVCIDLSCW---------IVQLQNVN 42
MG+ LWD+L + HH + R+ +D +CW + +++
Sbjct: 1 MGINGLWDVLGQGEEWAIADYAAAHFAKHH-RPLRIAVDEACWRFNNLTDEQVRKIREGE 59
Query: 43 KSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
+ P +K+ L + R LN L+FV+DG RR G +
Sbjct: 60 PAANP-VEKVILWRILRYWR----LNIQLLFVTDG---------LRR---PGKKRWGRPG 102
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
L + C +K + SL VP EAEA+CA L ++ D +S
Sbjct: 103 GRGGGGML------DAEC-VKMLHKMFDSLNVPYHRAPGEAEAECARLQQLNVVDAVWSD 155
Query: 163 DSDIFLFGARTV---YRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSDY- 216
DSD +FG T+ +R G++ + + Y D + + F +SL+ A+L G DY
Sbjct: 156 DSDCLMFGCTTLIMAHRSS-SGKKDWDRIQLYRSDILLPRFDFDTDSLVMFAVLAGGDYD 214
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
+G+RG GP++A +V+QR V A+ ++ E W + L+
Sbjct: 215 DKGLRGCGPQTA---------RMVVQRKHGLARRLVVSAERAQLESW-------RDMLSV 258
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNP 303
+ +G+ S+ + P + ++ Y NP
Sbjct: 259 VLANSGSGLSIPADFPNLKALNGYRNP 285
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 105/260 (40%), Gaps = 23/260 (8%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFL-- 54
MG+K L +L C + + L L +++ ID S I Q +S P L
Sbjct: 1 MGIKGLAKLLSDEAPDCIREVELKSLHGRKIAIDASMAIYQFLIAVRSGGPNQQATMLTN 60
Query: 55 ---------RGLFHRLRALIALNCGLIFVSDGSIP------AIKLSTYRRRLNSGSEVTQ 99
+G+F+R + +FV DG P IK R + + V
Sbjct: 61 AEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAALAVAS 120
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
++ N+++ + + + ++ + L +GVP + EAEAQ A L L
Sbjct: 121 EEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGLVYAT 180
Query: 160 FSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
+ D D F + R + + V + + L + + L ++LG DY
Sbjct: 181 GTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLGCDYC 240
Query: 218 QGVRGLGPESACQIVKSVGD 237
+RG+GP++A ++++ G+
Sbjct: 241 DTIRGVGPKTALKLIREHGN 260
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPVVEAPAEGEAQCAQMAAAGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LG R L+ +A+L G+D+++GVRG+GP++A + V GD
Sbjct: 202 AATLSDLGLDRQGLVDVAMLCGTDFNEGVRGVGPKTAVKAVTEHGD 247
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQ---DDKNLDKM 107
L GLF+R + I+V DG P IK L R R +++ + + N+++
Sbjct: 62 LSGLFYRTINFLENGIKPIYVFDGKPPEIKRKELEQRRIRKERAAKMAEKAYSEGNIEEA 121
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S M+KEAK L ++G+P ++ EE EA+ A + + L S D D
Sbjct: 122 SKYVVQAIFLTDEMVKEAKELLDAMGIPVIQAAEEGEAEAAYIAKKGLAWATASQDYDSL 181
Query: 168 LFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA + R++ + G+ Y+ E++ + + LG LI +A+L+G+DY
Sbjct: 182 LFGAPRLVRNLTITGKRKLPGKDIYIEIKPEIIELEKLLKTLGITHEQLIDIAILIGTDY 241
Query: 217 S-QGVRGLGPESACQIVKSVG 236
+ GV G+GP++A Q++K+ G
Sbjct: 242 NPDGVEGIGPKTAYQLIKAYG 262
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 33/333 (9%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEEGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKN 103
L G F+R ++ N ++V DG P +K +RL E +D+
Sbjct: 61 TTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGT 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+D++ + + EAK L +G+P + EAEAQCA L S D
Sbjct: 121 VDEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFG--RNSLITLALLLGSDYSQGVR 221
D + + R + E + ++ E G G + I L +LLG DY + ++
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKEQFIDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVKSVG--DNVV--LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQE 277
G+GP +A +++K G DN+V LQ+ + K E W +K +E L+ E
Sbjct: 241 GVGPVTAYKLIKEHGSLDNLVEYLQKNPD-------KTKFKVPENWPYK-EARELFLHPE 292
Query: 278 INVNGTDHSLQRETP-FSQVIDAYSNPKCYSAD 309
+ + T+ L+ + P +I+ K +S D
Sbjct: 293 V-IEATEVELKWKEPDVDGLIEYMVKQKGFSED 324
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 27/265 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + +
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAEIEKFNRRLVRVTKEHA---R 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 242 QRIASEGLSFVKRAKNSKKEGWSFK 266
L + +K + E W++K
Sbjct: 260 -------LDNLDTSKYTVPENWNYK 277
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 120/290 (41%), Gaps = 36/290 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL------QNVNKSYRPQTD 50
MG+K L +L E ++ + ++N ++V ID S + Q Q+ + Q +
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 51 KL-FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R ++ FV DG P +K +R+ + +D + ++ +
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120
Query: 110 LRRNMGSEFSCMI--------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
M F+ EAK L +G+P + EAEAQCA L S
Sbjct: 121 A--EMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKVYAAAS 178
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F A + R + E + + Y ++ L + L +LLG DY +
Sbjct: 179 EDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGCDYCEP 238
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSK---KEGWSFK 266
+RG+GP A ++++ G L R FVK A SK E W ++
Sbjct: 239 IRGVGPARAVELIRQYG---TLDR-------FVKEADRSKYPIPEDWPYE 278
>gi|74824687|sp|Q9GZ01.1|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
Length = 650
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + L + + ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG------------ERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|213408080|ref|XP_002174811.1| DNA repair endonuclease rad2 [Schizosaccharomyces japonicus yFS275]
gi|212002858|gb|EEB08518.1| DNA repair endonuclease rad2 [Schizosaccharomyces japonicus yFS275]
Length = 580
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 56/264 (21%)
Query: 1 MGVKNLWDILESCKKT-----------LPLHHLQNK----RVCIDLSCWIVQLQNVNKSY 45
MG+ LW+ ++S K + L + H + ++ ID S W +Q+Q+
Sbjct: 1 MGIPGLWEEIDSSKTSSSKANNFDLLQLSVEHWKKHSCPLKIAIDASIWSIQIQSGQGGS 60
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
P LR ++RL L ++FV DG
Sbjct: 61 NPA-----LRTFYYRLCRLQKAGVAVVFVFDGP--------------------------- 88
Query: 106 KMSSLRRN----MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
K S +RN + + + K K L + G+ + EAEA CALL + D ++
Sbjct: 89 KRPSWKRNKLLHLNTRELPLHKAMKKLITAFGMLYWDAPGEAEADCALLQKLKIVDYVWT 148
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVV---CYEMDDIERKLGFGRNSLITLALLLGSDY-S 217
D+D+F FG R + R+ ER + Y D I N +I +ALL DY +
Sbjct: 149 EDADVFAFGGRHIIRNDKSSERNNIFNIQVYNADKIYTLTNLNCNGVILIALLNSGDYNT 208
Query: 218 QGVRGLGPESACQIVK-SVGDNVV 240
+G+ G ++A K GD +V
Sbjct: 209 KGLLNCGIQTALAAAKLGYGDKLV 232
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K RR + ++ + +K+
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRAETEKQLAEAQDIAEKIKH 124
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +G+P + EAEAQCA L + S D D +
Sbjct: 125 ERRLVKVTKEHNEEAKKLLGL-MGIPYITAPSEAEAQCAELAKAGVVYAAASEDMDTLCY 183
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L I L ++LG DY +RG+GP +
Sbjct: 184 RVPHLLRHLTFSEAKKEPIHELDVEVVLRGLDLTIEQFIDLGIMLGCDYCDSIRGVGPVT 243
Query: 228 ACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
A +++K G +++ + E ++K E W +K +E N ++ + G D
Sbjct: 244 ALKLIKEFGSLEKIVEHFSEENEQKGGKSKYKIPENWPYK-EARELFTNPDV-IQGKDVE 301
Query: 287 LQRETPF-SQVIDAYSNPKCYSAD 309
L+ P ++I+ K +S D
Sbjct: 302 LKWTPPKEEELIEFLCTEKMFSED 325
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 13/180 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GLF+R A + + +FV DG P K + +R S SS N
Sbjct: 38 LAGLFYRTLAFLEHDIKPVFVLDGKPPNQKRAVLEKRAQSTGW----------SSSQGPN 87
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGART 173
GS F+ +E L +GVPC++ EAEA CA L + S D D FG
Sbjct: 88 TGSAFN---QECLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMDTLAFGGTV 144
Query: 174 VYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
+ R + + Y + + L + L +LLG DY + GLGP A +++K
Sbjct: 145 LLRQLNAKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGLGPSRALKLIK 204
>gi|67525457|ref|XP_660790.1| hypothetical protein AN3186.2 [Aspergillus nidulans FGSC A4]
gi|40743763|gb|EAA62950.1| hypothetical protein AN3186.2 [Aspergillus nidulans FGSC A4]
gi|259485857|tpe|CBF83236.1| TPA: Rad2-like endonuclease, putative (AFU_orthologue;
AFUA_3G13260) [Aspergillus nidulans FGSC A4]
Length = 822
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 142/361 (39%), Gaps = 59/361 (16%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + L ++ L + HL+ R+ +D+S W+ Q+Q P+
Sbjct: 1 MGIPGLINALGPGERISLSKLAISHLERTSRPIRIAVDISIWLFQIQAGRGGKNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGS-IPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLR 111
LR LF RL ++AL +FV DG P K G VT
Sbjct: 57 -LRTLFFRLLKILALPIHPLFVYDGKDKPPFK---------RGKAVTG------------ 94
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R+ G+ + +I+ +K L P + EAEA+C+ L + + D S+D D +FG+
Sbjct: 95 RSYGN--APIIQLSKILIDLFRFPRHDAPGEAEAECSRLQMAGVVDAVMSNDVDALMFGS 152
Query: 172 RTVYRDI------WLGERGYVVCYEM-DDIERKLGFGRNSLITLALLLGSDY-SQGVRGL 223
+ G +V Y M D + + R +I A+L G DY GV
Sbjct: 153 GFTVMNFSKEAGSGAGGATHVTSYRMGDGADSNVKLDRPGMILFAMLSGGDYLPSGVPKC 212
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGT 283
G + A +I + +L+ + ++G R N +E ++ E Q T
Sbjct: 213 GSKLAAEIATAGFGKDLLEALEADGAELETRL-NEWRERLQYELEENESGYFQ------T 265
Query: 284 DHSLQR--ET-PFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQH----ARLHQVCAQFFQ 336
H R ET P ++ Y+ P S R ++ + + L Q A F+
Sbjct: 266 KHKAVRIPETFPDRTILSYYAKPVVSSEQQVESLRYRLRNAWDREVNVSELRQFTAYAFE 325
Query: 337 W 337
W
Sbjct: 326 W 326
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
G+P + EAE+QCA LN C + DSD +FGA V ++ + Y
Sbjct: 541 FGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVFGANRVLKNFY--NSNIFEVYTS 598
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKS 234
+ + +LG GR L +A++ G DY+ G++G+G +A +I+K+
Sbjct: 599 ERLFSQLGIGRQELALIAIICGCDYTTGIKGVGIINALEIIKA 641
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV++LWD+L + + L K+ ID S W+ + R D + G+F
Sbjct: 1 MGVQHLWDLLAAAGLPARIEALVGKKCAIDASFWLSHCLASESNMRHGGDVI---GVFF- 56
Query: 61 LRALIALNCGL--IFVSDGSIPAIKLSTY-RRRL 91
LR L G+ IFV DG P K T +RRL
Sbjct: 57 LRICYLLEKGIKPIFVFDGKPPVAKRKTLIKRRL 90
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 17/251 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDKL--F 53
MGVK DI+ + + L K V +D + I Q Q + Q ++
Sbjct: 1 MGVK-FKDIV--SPEEIKFEDLDGKVVALDAANVIYQFLSSIRQIDGTPLKDQNGRITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKM 107
G+ +R +L+ I+V DG A+K T ++R E + ++ LD
Sbjct: 58 FSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERRWKEALEEGRLDDA 117
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
F +++ +K L +G+P ++ E EAQ + + + S D D
Sbjct: 118 RKFAVRSSRMFPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVAQGDAWCVASQDYDCM 177
Query: 168 LFGARTVYRDIWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
LFGA + +++ + G + E++ I L R L+ LA+++G+D++QG++G+G +
Sbjct: 178 LFGAPRMVKNLTISGTQKTPEIIELNKILENLSITREQLVDLAIMVGTDFNQGIKGIGAK 237
Query: 227 SACQIVKSVGD 237
+++K GD
Sbjct: 238 KGLKLIKEHGD 248
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 36/290 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K L +L+ + K + + V ID S + Q + Y
Sbjct: 1 MGIKGLSKLLQRYAPNSMKDGKIDQYFGRVVAIDASILVYQFISAVRDQEGSTLVNEYGE 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ-------- 99
T + G F+R L+ I+V DG P +K ++R + E +
Sbjct: 61 TTSHII--GTFYRTIKLMTSGVKPIYVFDGKPPEMKTEELKKRQTNAKEAIEKLEKAKES 118
Query: 100 -DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
D + + K M E S +K+ L +G+P +E EAE CA L C
Sbjct: 119 GDKEEIKKQMKRTARMTKEQSDDVKKLVEL---MGIPAIEANCEAEGTCAELVKSGKCFA 175
Query: 159 CFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ D D G+ V R + + + Y + I + GF + I L +LLG DY
Sbjct: 176 TATEDMDALTLGSDIVLRKFSASDNKKEPIREYSLKSILEETGFTMDMFIDLCILLGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ ++G+GP +A +++K + L + + K +GW +K
Sbjct: 236 CETIKGIGPVTAFEMIKEY-------KTIENLLKHLDKGKYIVPDGWKYK 278
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 29/251 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L L K+V ID + Q + + P D L G F+R L+
Sbjct: 11 RKEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLDKMSSLRRNMGSEF 118
+V DG P K +R + E + + D K ++R +E
Sbjct: 71 AGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNE- 129
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+I +AK L +G+P ++ E EAQ A + + S D D LFGA + R++
Sbjct: 130 -ELINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFGAPRLVRNL 188
Query: 179 WLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 226
+ R G V E ++++ ++LG R LI LA+L+G+DY+ G++G+GP+
Sbjct: 189 TITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPGGIKGIGPK 248
Query: 227 SACQIVKSVGD 237
A IVK D
Sbjct: 249 KALTIVKRTKD 259
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 27/265 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ H ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 MKHFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + +
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATDAGDDAEIEKFNRRLVRVTKEHA---R 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP ++ EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
+ V + D + L I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 242 QRIASEGLSFVKRAKNSKKEGWSFK 266
L + +K + E W++K
Sbjct: 260 -------LDNLDTSKYTVPENWNYK 277
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG +L D+ + + +P L+ V +D W+ + + + + +D+ +
Sbjct: 1 MGNADLRDL--ASIRDVPFAELEGSVVAVDAHNWLYRY--LTTTVKWTSDETYTTADGVE 56
Query: 61 LRALIALNCGL----------IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DK 106
+ LI + GL + V DG++ +K R + + D
Sbjct: 57 VANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDA 116
Query: 107 MSSLRRNMGSE-FSCMIKEA-KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R ++ + I+E + L L VP +E E EAQCA + D S D
Sbjct: 117 VEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDY 176
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D LFGA T R L +G ++ L R L+ +A+L G+D+++GVRG+G
Sbjct: 177 DTLLFGAPTTLRQ--LTSKGDPELMDLAATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIG 234
Query: 225 PESACQIVKSVGD 237
P++A VK GD
Sbjct: 235 PKTAVTAVKEHGD 247
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 27/265 (10%)
Query: 19 LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL------FLRGLFHRLRALIALNCGLI 72
+ + ++V ID S + Q +S Q + L G+F+R L+ +
Sbjct: 23 IKNFFGRKVAIDASMCLYQFLIAVRSEGAQLATVNGDPTSHLMGMFYRTIRLLDNGIKPV 82
Query: 73 FVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIK 123
+V DG P +K +R E + DD ++K + + E + +
Sbjct: 83 YVFDGKPPDLKSGELAKRAERREEAEKALKAATEAGDDAEIEKFNRRLVRVTKEHA---R 139
Query: 124 EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE- 182
EAK L +GVP +E EAEAQCA L + D D FG+ + R + E
Sbjct: 140 EAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATATEDMDALTFGSTKLLRYLTYSEA 199
Query: 183 -RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
+ V + + + LG I L +LLG DY + ++G+GP+ A +++ + D +
Sbjct: 200 RKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCESIKGIGPKRAIELINNYRDIETI 259
Query: 242 QRIASEGLSFVKRAKNSKKEGWSFK 266
L + +K + E W++K
Sbjct: 260 -------LDNLDTSKYTVPENWNYK 277
>gi|296824092|ref|XP_002850547.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238838101|gb|EEQ27763.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 782
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 98/230 (42%), Gaps = 44/230 (19%)
Query: 19 LHHLQ--NK--RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFV 74
+ HLQ NK R+ +D+S W+ Q+Q P LR LF RL LI+L IFV
Sbjct: 31 IGHLQRTNKPLRLAVDVSIWLFQVQAAQGGANPA-----LRTLFFRLTRLISLPIQPIFV 85
Query: 75 SDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLG 133
DG P K + +G+++ L R + FS
Sbjct: 86 FDGPHRPDYKRGRLISKNAAGAQI-----------ELSRKLIELFS-------------- 120
Query: 134 VPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI------WLGERGYVV 187
PC EAEA+CA L + D S+D D +FG++ + G +V
Sbjct: 121 YPCHTAPGEAEAECAKLQRTGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVD 180
Query: 188 CY--EMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKS 234
Y E +D + K+ ++ +ALL G DYS GV GP+ A +I ++
Sbjct: 181 LYDTEAEDGDSKVTLDTGGMVLVALLSGGDYSPAGVPLCGPKLAAEIARA 230
>gi|242781940|ref|XP_002479901.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218720048|gb|EED19467.1| Rad2-like endonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 883
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDG-SIPAIKL 84
R+ +D+S W+ QLQ P+ LR LF RL L+AL +FV DG P K
Sbjct: 50 RIAVDISIWLFQLQAGRGGQNPE-----LRTLFFRLVRLLALPVHPLFVYDGKQKPPFK- 103
Query: 85 STYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAE 144
R + +G R+ G+ + +I +K L P + EAE
Sbjct: 104 ---RGKATTG-----------------RSYGN--APIINLSKILIDLFKFPRHDAPGEAE 141
Query: 145 AQCALLNLESLCDGCFSSDSDIFLFGAR-TVYRDIWLGERG-----YVVCYEMD---DIE 195
A+CA L + D S+D D +FG+ TV G +V CY + D+E
Sbjct: 142 AECARLQQAGVVDAVMSNDIDTLMFGSGLTVMNYSKESSTGTTAATHVDCYATETQLDVE 201
Query: 196 RKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKS 234
+ R ++ A+L G DY GV GP A +I K+
Sbjct: 202 ANVKLSRAGMVLFAMLSGGDYLPSGVTKCGPGLAGEIAKA 241
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + K P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
++V DG P K +R L G E+ + K + + +
Sbjct: 71 AGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKG-EIEEARKYAQRATRVN- 128
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+I++AK L +G+P ++ E EAQ A + + S D D LFGA
Sbjct: 129 ------EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAP 182
Query: 173 TVYRDIWL-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GV 220
+ R++ + G+R G V E ++++ ++L R LI LA+L+G+DY+ G+
Sbjct: 183 RLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGI 242
Query: 221 RGLGPESACQIVKSVGD 237
+G+G + A +IV+ D
Sbjct: 243 KGIGLKKALEIVRHSKD 259
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L ++ K + + ++V ID S + Q QN + ++ +
Sbjct: 1 MGIKGLTALISDEAPGAIKEMEIKTYFGRKVAIDASMSLYQFLIAVRQNDGQQLMTESGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT------QDDKN 103
L G F+R +I ++V DG+ P +K ++R E +D +
Sbjct: 61 TTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEEEQKDVAD 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+KM L R +E + L +G+PC+ EAEAQCA L S D
Sbjct: 121 AEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKVYAAGSED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIE--RKLGFGRNSLITLALLLGSDYSQGVR 221
D FG + + + E+ + +++D + L I L +LLG DY ++
Sbjct: 181 MDTLTFGTPILLKHLTASEQKKLPVHQVDLAKALEGLQMTMAQFIDLCILLGCDYLDPIK 240
Query: 222 GLGPESACQIVK 233
G+GP++A ++++
Sbjct: 241 GIGPKTALKLIR 252
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG +L D+ + + +P L+ V +D W+ + + + + +D+ +
Sbjct: 1 MGNADLRDL--ASIRDVPFAELEGSVVAVDAHNWLYRY--LTTTVKWTSDETYTTADGVE 56
Query: 61 LRALIALNCGL----------IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DK 106
+ LI + GL + V DG++ +K R + + D
Sbjct: 57 VANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDA 116
Query: 107 MSSLRRNMGSE-FSCMIKEA-KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R ++ + I+E + L L VP +E E EAQCA + D S D
Sbjct: 117 VEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDY 176
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D LFGA T R L +G ++ L R L+ +A+L G+D+++GVRG+G
Sbjct: 177 DTLLFGAPTTLRQ--LTSKGDPELMDLAATLSDLDLDRQGLVDVAMLCGTDFNEGVRGIG 234
Query: 225 PESACQIVKSVGD 237
P++A VK GD
Sbjct: 235 PKTAVTAVKEHGD 247
>gi|389603118|ref|XP_001568459.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505733|emb|CAM43572.2| putative DNA repair protein RAD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1029
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 133 GVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD 192
GVP + EA+AQCA L L D F+ DSD+ + GA TV R + + +VV YE
Sbjct: 749 GVPYVLSPAEADAQCAFLARRGLVDAVFTEDSDVLVHGATTVLRG-FFSQSKHVVAYEQT 807
Query: 193 DIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
+ G + L+ LA LLG DY++G+ G+G
Sbjct: 808 HLS-ACGITKTVLVALASLLGCDYAEGISGIG 838
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTD--KLFLRGLF 58
MGV+ LW +L+S L L+ KRV ID S WI Q + P D L G
Sbjct: 112 MGVRGLWRLLDSFGVVLQPDELKGKRVAIDASIWIAQFR---ARVAPGEDIEHRVLEGFL 168
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL 91
R+ L+ + +FV DG+ + K + R+
Sbjct: 169 ARILKLLFYDIRPVFVFDGTASSSKSAENHHRM 201
>gi|170095687|ref|XP_001879064.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
gi|164646368|gb|EDR10614.1| DNA repair endonuclease-like protein [Laccaria bicolor S238N-H82]
Length = 762
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 104/258 (40%), Gaps = 41/258 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK-------------RVCIDLSCWIVQLQNVNKSY-- 45
MGV + ILE ++ L K RV +D+S WI Q Q S
Sbjct: 230 MGVPGISKILEPARRVQTLTEFATKEGFQLNPHGDNMVRVGVDVSVWICQAQAAAHSMPR 289
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
Q + LR +F R+ L+A + IFV+DG R R+ G V D +
Sbjct: 290 TQQGENPALRIIFFRICHLLAQSIQPIFVADGP--------NRPRVKRGINVRADKPHW- 340
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
M + ++EA G P EAEA+ A L L ++D D
Sbjct: 341 --------MEAYIEDFVQEA-------GCPMYRAPGEAEAELAQLTAHGLIKAVLTTDFD 385
Query: 166 IFLFGARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+FLFG + + + G + Y DI+ + LI +A+L G DY Q G+ G
Sbjct: 386 VFLFGGTYMIKPPNVKTDGDRITYYTSGDIQAQTSLTCAKLIFIAILGGGDYDQVGLPGC 445
Query: 224 GPESACQIVKSVGDNVVL 241
G + A Q+ + N++
Sbjct: 446 GLKIAHQLAQGELPNLLF 463
>gi|448474374|ref|ZP_21602233.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
gi|445817681|gb|EMA67550.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
Length = 325
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDYDTLLFGAPTTLRQ--LTSKGNPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
LG R L+ +A+L G+D+++GVRG+GP++A + + GD
Sbjct: 202 AATLDDLGVDRQGLVDIAMLCGTDFNEGVRGVGPKTAVKAIAEHGD 247
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 33/263 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ------------LQNVNKSYRPQ 48
MGVK DI+ + + L++K V +D + I Q L + NK+
Sbjct: 1 MGVK-FKDIV--TPENIKFQDLESKIVALDAANVIYQFLSSIRQVDGTPLMDENKNITSH 57
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQD----DK 102
G+ +R +LI I++ DG A+K T RR + S+ D +
Sbjct: 58 -----FSGILYRTSSLIEKGIKPIYIFDGVSDALKKDTQDKRREVKEESQKKWDKALEEG 112
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLCDGCF 160
NL++ +I+ +K L LGVP ++ + E EAQ + + N ++ C G
Sbjct: 113 NLEEARKYAVRSSRMSRDIIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDAWCVG-- 170
Query: 161 SSDSDIFLFGARTVYRDIWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
S D D LFGA + R++ + G + + + + + R L+ +A+L+G+D+++G
Sbjct: 171 SQDYDCILFGATRMVRNLTITGGKANLELITLKKVLENMEITREQLVDIAILVGTDFNRG 230
Query: 220 VRGLGPESACQIVKSVGD--NVV 240
V+G+G ++ +++K GD NV+
Sbjct: 231 VKGVGAKTGLKLIKKHGDIFNVI 253
>gi|393225877|gb|EJD33749.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 574
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 151/378 (39%), Gaps = 80/378 (21%)
Query: 1 MGVKNLWDILESCKKTLPLHHL------------QNKRVCIDLSCWIVQLQNVNKSYRPQ 48
MGVK+LW IL+ + LPL + + V ID+S WI ++ NK PQ
Sbjct: 1 MGVKDLWSILQPAAEKLPLAQMAVQAFEANTSRYRGYTVGIDISIWIGHMKVFNKI--PQ 58
Query: 49 TDKLF-LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
++ L R L+ L +FV DG+ E D + ++
Sbjct: 59 CGPTAGIQMLLFRCAHLLELPLLPLFVFDGN-----------------ERPTDKRGKEQQ 101
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
R G EF +AK + + G + EAEA+ A LN + D ++ D D F
Sbjct: 102 YKER---GIEF-----DAKKVLDAYGFAWAQARGEAEAELAYLNALGVIDAVWTDDGDAF 153
Query: 168 LFGARTVYR------------DIWLGER---GYVVCYEMDDI--ERKLGFGRNSLITLAL 210
LFGA T+ R +++ + V +++ D+ ++ R LI +AL
Sbjct: 154 LFGAMTIIRNPSAKLSSNIHANVFTSGKHDANRVQVFKIADLLNNDEIQLNRAGLILIAL 213
Query: 211 LLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNN 269
L G DY +G+ G+G A + + GD++ + ++ ++ + ++
Sbjct: 214 LRGGDYHKGIDGVGMTIAHGLARCGFGDSLA---------AVMQSQRSQDVDSFTSSVLE 264
Query: 270 KEESLNQEINVN-----GTDH-----SLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQ 319
+ E+ N GT H ++ P + +AY+NP SA +
Sbjct: 265 WRAGVVHELRTNSSGQLGTRHPKLAADFPQDFPDIDIYNAYANPVVTSAGEIEIDWYRMP 324
Query: 320 HLFQHARLHQVCAQFFQW 337
+ +L + C +F W
Sbjct: 325 DI---TKLAETCEHYFSW 339
>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 476
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 111/262 (42%), Gaps = 31/262 (11%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKL--- 52
MG+ L +L +C K + L L ++V +D S + Q L V Q+ L
Sbjct: 1 MGIHGLTKLLSDEAPNCMKEVDLDSLTGRKVAVDASMAMYQFLIAVRSGGEGQSQMLTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VT 98
++G+F+R +++ ++ DG P +K +R ++
Sbjct: 61 AGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAELKVATE 120
Query: 99 QDDKN-LDKMSS--LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 155
DDKN +DK S +R C K L L +GVP + EAEAQCA L E +
Sbjct: 121 ADDKNDVDKFSKRLVRVTRDHNEDC----KKLLSL-MGVPVVTAPSEAEAQCAALAREGV 175
Query: 156 CDGCFSSDSDIFLFGARTVYRDI-WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
G + D D F + R + + G ++ + + + L + L +L G
Sbjct: 176 VYGTATEDMDALTFQTPKLLRRMTFSGSNQPILEVDYQKLLQGLELSHEKFVDLCVLCGC 235
Query: 215 DYSQGVRGLGPESACQIVKSVG 236
DY+ ++G+GP+ A +V+ G
Sbjct: 236 DYTGSIKGIGPKKALALVRQHG 257
>gi|393235585|gb|EJD43139.1| PIN domain-like protein, partial [Auricularia delicata TFB-10046
SS5]
Length = 474
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 133/339 (39%), Gaps = 68/339 (20%)
Query: 26 RVCIDLSCWIVQLQNVNKSYRPQTDK-LFLRGLFHRLRALIALNCGLIFVSDG-SIPAIK 83
RV IDLS W+ +Q ++K +P+ K +R LF R L+A++ +FV DG PA K
Sbjct: 32 RVGIDLSIWLGHMQFLSK--KPECGKNTGIRLLFFRCAHLLAMSILPVFVFDGLQWPAYK 89
Query: 84 LSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEA 143
R+ S N G+ + AL G C + EA
Sbjct: 90 HGKARKYSLS-------------------NYGNLY--------ALIEVFGFECHQAPGEA 122
Query: 144 EAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVV-------------CYE 190
EA+ A LN + D ++ DSD+FLFGA R + V Y
Sbjct: 123 EAELAHLNRIGVIDAIWTDDSDVFLFGATLSPSTTLSANRAHPVINREGKQDDNHVHVYT 182
Query: 191 MDDI--ERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEG 248
D+ + R+ LI +ALL G DY GV G+G A + + G
Sbjct: 183 AIDLLTNDTIQLDRDGLILVALLRGGDYHGGVEGVGIRIAHALAR-----------CGFG 231
Query: 249 LSFVKRAKNSKKEGWSFKCNNKEESLNQEINVN-----GTDHS-----LQRETPFSQVID 298
S ++ +++ +S + QE+ N G H ++ P Q+
Sbjct: 232 QSLAAAVQSLQQDEFSNALAQWRSEIVQELYTNSRGQLGRRHQKLAADFPQDFPDLQIYR 291
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQW 337
AY+ P ++ +AVH + L A L C +F W
Sbjct: 292 AYAQPITSGSNGKAVHINWYRPL-DIAALAGHCELYFDW 329
>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
gi|74876406|sp|Q7K734.1|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
Length = 672
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + L + + ID S + Q Q N +
Sbjct: 1 MGIKGLTKFIADAAPNAIKEIKIESLMGRIIAIDASMSLYQFIIAIRDSEQYGNLTNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ + K
Sbjct: 61 ETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLKKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAE+QCA L +L +
Sbjct: 121 NLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLAHATATE 180
Query: 163 DSDIFLFGARTVYRDIWLG------------ERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 30/270 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHH----LQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG 56
MG+ L D++ + H K + +D S + Q + P LRG
Sbjct: 1 MGITKLADLIRAEAPDSISHRDISDYAGKVIALDTSVVVNQFRAATPLSSP------LRG 54
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGS 116
LF R + + +FV DG P KL +R + LR + S
Sbjct: 55 LFFRTLTFLEHDIKPVFVFDGKPPVEKLPLLEKRAEAAGW----------SRPLRTGIAS 104
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
++ + LGVP ++ +AE CA L E S D D FGA + R
Sbjct: 105 ---SQTRDCLEVLKHLGVPVVQAPGDAEGLCASLVREGRAHAVASEDMDTLPFGANVLIR 161
Query: 177 DIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 236
+ + +V Y + + L L+ L +LLG DY + GLGP+ A +++
Sbjct: 162 QLNAKKDSEIVEYSLPKLLEALRISLEELVDLCILLGCDYCDKIPGLGPKRALALIQK-- 219
Query: 237 DNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
R L + R + W FK
Sbjct: 220 -----HRTIENVLLNINRETHPVPHLWKFK 244
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R ++ ++V DG P +K +R +E + ++ N+
Sbjct: 64 LMGMFYRTIRMVESGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHLQEAQEAGEENNI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + + + E K L +G+P LE EAEA CA L + D
Sbjct: 124 EKYSKRLVKVTQQHN---DECKKLLTLMGIPYLEAPGEAEASCAALVKAGKVYAAATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + ++ I + LG + L +LLG DY + +RG
Sbjct: 181 DCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLGCDYCESIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKRAVELIK 251
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 27/264 (10%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLS-CWIVQLQNVNKSYRPQ------T 49
MGVK L +++ + L +L ++V ID S C L V +S Q
Sbjct: 1 MGVKGLNQLIKEHAPEAFREFQLKNLFGRKVAIDASMCLYQYLIAVRQSDGQQLTSEDGE 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R L+ ++V DG P +K +R+ E + +++ ++
Sbjct: 61 TTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQEDIKDTAT 120
Query: 110 LRRNMGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + E + EAK L +G+P ++ EAEAQCA L + S D
Sbjct: 121 VEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQ 218
D + + R + E + +D I+ K L + + I L +LLG DY +
Sbjct: 181 MDTLCYSPPYLLRHLTFAEARKM---PIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCE 237
Query: 219 GVRGLGPESACQIVKSVG--DNVV 240
++G+GP +A +++K G DN+V
Sbjct: 238 TIKGVGPVTAFKLIKEHGSLDNIV 261
>gi|317374921|sp|B6QT52.2|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 18/254 (7%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQ------TD 50
MG+K+L+ ++ E+ + ++N ++V ID S I +S Q
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLMSEAGET 60
Query: 51 KLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK------LSTYRRRLNSGSEVTQDDKNL 104
L G+F+R ++ ++V DG+ P +K S +R + E ++
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHEEAKETGTA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ M R +E K L +GVP ++ EAEAQCA+L S D
Sbjct: 121 EDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAASEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D F A + R + E + ++ +D LG I L +LLG DY + +
Sbjct: 181 DTLCFEAPILLRHLTFSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLGCDYLEPIPK 240
Query: 223 LGPESACQIVKSVG 236
+GP +A ++++ G
Sbjct: 241 VGPNTALKLIREHG 254
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 22/253 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MG +L D+ + + +P L+ V +D W+ + + + + +D+ +
Sbjct: 1 MGNADLRDL--ASIRDVPFAELEGSVVAVDAHNWLYRY--LTTTVKWTSDEKYTTADGVE 56
Query: 61 LRALIALNCGL----------IFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DK 106
+ LI + GL + V DG++ +K R + + D
Sbjct: 57 VANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAAAEERGDA 116
Query: 107 MSSLRRNMGSE-FSCMIKEA-KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ + R ++ + I+E + L L VP +E E EAQCA + D S D
Sbjct: 117 VEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVDHAGSEDY 176
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D LFGA T R L +G ++ L R L+ +A+L G+D+++GVRG+G
Sbjct: 177 DTLLFGAPTTLRQ--LTSKGDPELMDLAATLSDLDLDRQELVDVAMLCGTDFNEGVRGIG 234
Query: 225 PESACQIVKSVGD 237
P++A VK GD
Sbjct: 235 PKTAVTAVKEHGD 247
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKMSSLRR 112
L G+F+R L+ ++V DG +K T R+L + ++ +++ R
Sbjct: 58 LYGIFYRTINLLENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGEEDLR 117
Query: 113 NMGSEFSCM----IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
S + + + + K L +G+P ++ E EAQ + + +++ DG S D D L
Sbjct: 118 QYYSRINYITPQIVNDTKKLLDYMGIPYVDAPSEGEAQASYMTRKNV-DGVISQDYDCLL 176
Query: 169 FGARTVYRDIWL-GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYS 217
FGAR V R+ + G R Y Y +D++ ++ LI + +L+G+D++
Sbjct: 177 FGARKVLRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFN 236
Query: 218 QGVRGLGPESACQIVKSVGD-NVVLQRIASE 247
+G++G+G + A ++K GD VL+RI +
Sbjct: 237 EGIKGIGAKKALALIKKEGDIKAVLRRIGKD 267
>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
Delta H]
gi|28380011|sp|O27670.1|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 328
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 17/251 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGVK L D++ + + L L+ + V +D + + Q + + P D
Sbjct: 1 MGVK-LRDVV--SPRRIRLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR--LNSGSEV----TQDDKNLDKM 107
L G+ +R A++ +I+V DG +K T RR + SEV ++ ++D+
Sbjct: 58 LSGILYRTAAVMEREIRVIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDIDRA 117
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S +++ +K L LG+P ++ E EAQ + + S D D
Sbjct: 118 KKYAVRSSRMSSEILESSKRLLELLGIPYVQAPGEGEAQASYMVKMGDAWAVASQDYDCL 177
Query: 168 LFGARTVYRDIWL-GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
LFGA V R++ L G+ E++ R+L L+ +ALL+G+D+++GV+G+G
Sbjct: 178 LFGAPRVVRNLTLSGKLEDPEIIELESTLRELSISHTQLVDMALLVGTDFNEGVKGIGAR 237
Query: 227 SACQIVKSVGD 237
++++ GD
Sbjct: 238 RGLKLIREKGD 248
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R L+ ++V DG P +K +RL + + ++L + ++
Sbjct: 29 LSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIEDLKETGTVEEL 88
Query: 114 MGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
M E + EAK L +G+P + EAEAQCA L S D D
Sbjct: 89 MKYEKRTVRASREQNDEAKKLLELMGIPYIVAPSEAEAQCAELARAGKVFAAASEDMDTL 148
Query: 168 LFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
+ + + R + + E + ++D + + L R++ + L +LLG DY + ++G+GP
Sbjct: 149 CYEPKYLLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGCDYCETIKGVGP 208
Query: 226 ESACQIVKSVG--DNVV 240
+A +++K G DN+V
Sbjct: 209 VTAFKLIKEHGSLDNIV 225
>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
gi|317374885|sp|A5ABU3.1|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
Length = 395
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 148/335 (44%), Gaps = 37/335 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K L+ ++ E+ + ++N ++V ID S +++ +++ + T +
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK-------- 102
L G+F+R ++ ++V DG+ P +K +R SE T+ +
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETGTA 120
Query: 103 -NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+++K S + E + E K L +G+P ++ EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHNA---ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + R + E+ E ++ LG R I L +LLG DY +
Sbjct: 178 EDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSK---KEGWSFKCNNKEESLNQ 276
+ +GP +A ++++ D+ L+++ L F++ K E W ++ + +E LN
Sbjct: 238 IPKVGPNTALKLIR---DHGSLEKV----LEFMENDPKKKFVVPEDWPYE-DARELFLNP 289
Query: 277 EI-NVNGTDHSLQRETP-FSQVIDAYSNPKCYSAD 309
++ + N + + E P ++D K ++ D
Sbjct: 290 DVRDANDPECDFKWEAPDVPGLVDFLVKDKGFNED 324
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 30/272 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L ++ K++ + ++ +++ +D S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIV--VGRSGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT--------- 98
L+G+F R L+ ++V DG P +K ++RL+ +E T
Sbjct: 59 GEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEA 118
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
+ ++++K S + + + + K L +GVP +E EAEAQCA L
Sbjct: 119 DNKEDIEKFSKRTVKVTKQHN---DDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYA 175
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + + E D I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQRIASE 247
+RG+G +A ++++ G +L+ I+ E
Sbjct: 236 CDNIRGIGGMTALKLIRQHGSIEKILENISKE 267
>gi|429962438|gb|ELA41982.1| hypothetical protein VICG_00999 [Vittaforma corneae ATCC 50505]
Length = 613
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L +P +E + E +AQC L + L DG S D+D+ L G TVY++ + ++ ++ +
Sbjct: 447 LELPHIECIGETDAQCGYLFRKRLIDGVVSEDNDMVLHGV-TVYKNFFRKDKD-ILSFSY 504
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVL 241
D+ +LG ++SLI ++ LLGSDY GV+ +G +S +K V + VL
Sbjct: 505 QDVIEQLGLDQDSLIKMSYLLGSDYCIGVKRVGIKSVFDRLKDVSEAEVL 554
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV+NLW ILE C K +NK + +D S W+ Y+ D + + + R
Sbjct: 1 MGVRNLWKILEPCAKKAE---FKNKTLAVDTSIWM-------HHYKSIPDNMVVFSISKR 50
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
+ ++ +FV DG PA K T +R
Sbjct: 51 IFKILYNKIQPVFVFDGKPPAAKKETVEKR 80
>gi|358369087|dbj|GAA85702.1| DNA-repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 395
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 141/317 (44%), Gaps = 36/317 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K L+ ++ E+ + ++N ++V ID S +++ +++ + T +
Sbjct: 1 MGIKQLYQVISENAPDAIKAGDIKNHFGRKVAIDASMSIYSFLIAVRSEGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK-------- 102
L G+F+R ++ ++V DG+ P +K +R SE T+ +
Sbjct: 61 TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHEEAKETGTA 120
Query: 103 -NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+++K S + E + E K L +G+P ++ EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHNA---ECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + R + E+ E ++ LG R I L +LLG DY +
Sbjct: 178 EDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGCDYLEP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSK---KEGWSFKCNNKEESLNQ 276
+ +GP +A ++++ D+ L+++ L F++ K E W ++ + +E LN
Sbjct: 238 IPKVGPNTALKLIR---DHGSLEKV----LEFMENDPKKKFVVPEDWPYE-DARELFLNP 289
Query: 277 EI-NVNGTDHSLQRETP 292
++ + N + + E P
Sbjct: 290 DVRDANDPECDFKWEAP 306
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 136/306 (44%), Gaps = 31/306 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ I+ E+ + ++N ++V ID S +++ +++ + +T +
Sbjct: 1 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------- 101
L G+F+R ++ ++V DG+ P +K +R SE +
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ ++K S + E + +E K L +GVP ++ EAEAQCA+L S
Sbjct: 121 EEVEKFSRRTVRVTREHN---EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L R + L +LLG DY
Sbjct: 178 EDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
+ +GP +A ++++ G L+++ E + + K + E W +K + L + +
Sbjct: 238 IPKVGPNTALKLIRDHGS---LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPD 290
Query: 280 VNGTDH 285
V DH
Sbjct: 291 VRNADH 296
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 125/290 (43%), Gaps = 36/290 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K+L ++ E + ++N ++V ID S I Q +N+S
Sbjct: 29 MGIKHLHQLIQEHAPDAIKAGEIKNQFGRKVAIDASMSIYSFLIAVRSGGEQLMNESGET 88
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------T 98
+ L GLF+R ++ ++V DG+ P +K +R +E T
Sbjct: 89 TSH---LMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKET 145
Query: 99 QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + +E + L +G+P + EAEAQCA+L
Sbjct: 146 GTAEDVEKFSRRTVRVTREHN---EECRRLLKLMGIPFIVAPTEAEAQCAVLARGGKVYA 202
Query: 159 CFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + + R + E + ++ +D + L R I L +LLG DY
Sbjct: 203 AASEDMDTLTFNSPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDRTQFIDLCILLGCDY 262
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSF 265
++G+GP +A ++++ D V++ I S+ + K + E W F
Sbjct: 263 LDPIKGIGPSTALKLIREHKDLEGVVKHIQSQ-----PKGKLTIPEDWPF 307
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 150/359 (41%), Gaps = 45/359 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHH----LQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-- 52
MG+K L +L T + + + + +D S I Q V K T++
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQ 99
L+G+ +R ++ +FV DG P +K +R LN E+
Sbjct: 61 ITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIG- 119
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
D+ ++K S + + + K L +GVP +E EAEAQCA L
Sbjct: 120 DENAIEKFSKRTVKVTGRHN---DDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSD 215
S D D FGAR R L + GY V +++ + +LG + I L +L G D
Sbjct: 177 ASEDMDTLTFGARRFLRH--LTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLN 275
Y + +RG+G + A ++++ G E L + + + S E W ++ + +L
Sbjct: 235 YCENIRGIGGQRALKLIRQHG-------CIEEVLQNLNQTRFSVPEDWPYQ---EVRTLF 284
Query: 276 QEINVNGTDHSLQRETPFSQ-VIDAYSNPKCYSAD--SEAVHRV-LAQHLFQHARLHQV 330
+E NV +P + ++D S +S D ++AV ++ +A+ + R+ +
Sbjct: 285 KEPNVCAGIPDFTWTSPDPEGLMDFLSTENSFSPDRVTKAVEKIKVARDRYSPGRMKHL 343
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKMSSLRR 112
L G+F+R L+ ++V DG +K T R+L + ++ +++ R
Sbjct: 58 LYGIFYRTINLLENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGEEDLR 117
Query: 113 NMGSEFSCM----IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
S + + + + K L +G+P ++ E EAQ + + +++ DG S D D L
Sbjct: 118 QYYSRINYITPQIVDDTKKLLDYMGIPYIDAPSEGEAQASYMTKKNV-DGVISQDYDCLL 176
Query: 169 FGARTVYRDIWL-GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYS 217
FGAR + R+ + G R Y Y +D++ ++ LI + +L+G+D++
Sbjct: 177 FGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFN 236
Query: 218 QGVRGLGPESACQIVKSVGD-NVVLQRIA 245
+G++G+G + A ++K GD VL+RI
Sbjct: 237 EGIKGIGAKKALALIKKEGDIKAVLRRIG 265
>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
gi|74978262|sp|Q4XXP8.1|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 479
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDGDQYGNLMNEAG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ K
Sbjct: 61 ETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLLKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAEAQCA L + +
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYDMAHATATE 180
Query: 163 DSDIFLFGARTVYRDI------------WLGERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 38/262 (14%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV +L D+ + K + L L K + ID + Q ++ + +P L
Sbjct: 1 MGV-DLTDL--APKHEIELKELSGKIIAIDAFNTLYQFLSIIR--QPDGTPLVDEKGQVT 55
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS--- 108
L G+ +R+ LI L +FV DG P +K T + R +EV + + + + +
Sbjct: 56 SHLSGIIYRVTNLIELGIKPVFVFDGKPPLLKAETIKAR----AEVREAARQMYEAAVEE 111
Query: 109 ------SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ S + +I+++K L +G+P + E EAQ + + + D S
Sbjct: 112 GSAEAYKYAQAATSINAQIIEDSKTLLGYMGIPFIVAPSEGEAQASCMVSKGAADYVGSQ 171
Query: 163 DSDIFLFGARTVYRDIWLGERGYVV-----------CYEMDDIERKLGFGRNSLITLALL 211
D D LFGA + R++ + R V E+ + L R LI + +L
Sbjct: 172 DYDSLLFGAPRMVRNVTITGRRKVPRRNIYVDVKPEIVELKETLETLDITREQLIDIGIL 231
Query: 212 LGSDYSQGVRGLGPESACQIVK 233
+G+D++ G+ +GP++A ++VK
Sbjct: 232 VGTDFNPGIYKVGPKTALKLVK 253
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 20/211 (9%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKM 107
L GLF+R L+ N ++V DG +P +K + +R E ++ + ++D+
Sbjct: 58 LSGLFYRTTKLLDSNIRPVYVFDGEMPDLKATEAAQRREKREEAQKEWEKLKEEGDVDEA 117
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S MI E++ L ++GVP ++ E EAQ A + G S D D
Sbjct: 118 FSKAMQSSRVTGDMIDESRELLDAMGVPYVDAPSEGEAQAARMAANGNVYGVGSQDWDSL 177
Query: 168 LFGARTVYRDIWLGER-------GYVVCYEMDDIER---KLGFGRNSLITLALLLGSDYS 217
LFGA + +++ ++ + E+ +E LG R L+ + +L+G+D++
Sbjct: 178 LFGAERMVKNLTSRKKRSNRDGSSRTISTELIRLEHVLDNLGLSRRELVWMGMLVGTDFN 237
Query: 218 -QGVRGLGPESACQIVKSVGDNVVLQRIASE 247
G+ G+GP++A ++V+ N L+ + SE
Sbjct: 238 PDGIYGVGPKTALKLVRR---NQSLEEVLSE 265
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 19/254 (7%)
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYR----RRLNSGSEVTQDDKNLDKMS--S 109
G+F+R +I ++V DG P +K RR+ + ++ + + D M+
Sbjct: 2 GMFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTERRVEAEKQLAEAKEKGDAMAVEK 61
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
R + +EAK L +GVP + EAEAQCA L + D D F
Sbjct: 62 FERRLVKVTKDQNEEAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAF 121
Query: 170 GARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
G++ + R + E + E ++ + + + L +LLG DY++ +RG+GP+
Sbjct: 122 GSKRLLRQLTASEAKKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDYTKTIRGIGPKK 181
Query: 228 ACQIV-KSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHS 286
A +++ K VL+ I +E K E W F+ + + EI N D +
Sbjct: 182 AFELIQKHKTIENVLENIDTE--------KYPVPENWQFR-EARRLFMKPEI-TNCEDIN 231
Query: 287 LQRETPFSQVIDAY 300
LQ P ++ I Y
Sbjct: 232 LQWGKPDTEEIVRY 245
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 129/287 (44%), Gaps = 28/287 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++ E+ + ++N ++V ID S ++V +++ + +T +
Sbjct: 1 MGIKHLYQVIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLVAVRSDGQQLMSETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------- 101
L G+F+R ++ ++V DG+ P +K +R SE +
Sbjct: 61 TSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + +E K L +GVP + EAEAQCA+L S
Sbjct: 121 EDVEKFSRRTVRVTREHN---EECKKLLKLMGVPYINAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L R + L +LLG DY
Sbjct: 178 EDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ +GP +A ++++ G L+++ E + + K + E W +K
Sbjct: 238 IPKVGPNTALKLIRDHGS---LEKVV-EAIQSDPKKKYTIPEDWPYK 280
>gi|388853942|emb|CCF52440.1| uncharacterized protein [Ustilago hordei]
Length = 844
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 105/271 (38%), Gaps = 86/271 (31%)
Query: 1 MGVKNLWDILES--CKKTLPLHHL----------QNKRVCIDLSCWIVQLQNVNKSYRPQ 48
MG+ NLW L S TLP++ L + R+ ID S W+ Q + P
Sbjct: 1 MGIPNLWPELSSSATTTTLPIYCLTSFTTNTNTSRGLRLGIDASLWLFHAQQSSGGSNP- 59
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
+LR LF+RL L+ L +FV DGS + T++R G +V ++
Sbjct: 60 ----YLRLLFYRLAKLLTLPVLPLFVFDGS----ERPTWKR----GKQVKGKQHAIEH-- 105
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
F+ +I+ + G EAEA+ A LN E + D + DSD L
Sbjct: 106 --------PFTQLIE-------AFGFQWCRARGEAEAELAWLNTEGVVDAVLTDDSDALL 150
Query: 169 FGARTVYRDIW----LGERGY-------------------------------------VV 187
FGA+TV R+ W G + + +
Sbjct: 151 FGAQTVVRN-WGRNLSGTKAFNRTTSGGSDVFQDEESSSTTVGGGGGLQLTGSDRDLRIT 209
Query: 188 CYEMDDI--ERKLGFGRNSLITLALLLGSDY 216
Y+ D+ LG +N LI +AL+ G DY
Sbjct: 210 LYKASDMLSHPDLGLDQNGLILIALMSGGDY 240
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 23/257 (8%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L ++ K + ++ +++ ID S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIV--VGRSGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------D 101
L+G+F R L+ ++V DG P +K +R + ++ T+D
Sbjct: 59 GEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALET 118
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
N +++ + ++ K L +GVP +E EAEAQCA L S
Sbjct: 119 GNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVAS 178
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDYSQG 219
D D FGA R + + E D I +L + I L +L G DY
Sbjct: 179 EDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDYCDS 238
Query: 220 VRGLGPESACQIVKSVG 236
+RG+G ++A ++++ G
Sbjct: 239 IRGIGGQTALKLIRQHG 255
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 22/258 (8%)
Query: 1 MGVKNLWDIL-----ESCKKTLPLHHLQNK-------RVCIDLSCWIVQLQNVNKSYRPQ 48
MG+K+L+ ++ ++ K +H K R+ + + +++ +++ +
Sbjct: 1 MGIKHLYQVISENAPDAVKTGEIKNHFGRKVAIVRINRISMSIYSFLIAVRSDGQQLMSD 60
Query: 49 TDKL--FLRGLFHRLRALIALNCGLIFVSDGSIPAIK------LSTYRRRLNSGSEVTQD 100
+ L G+F+R ++ ++V DG+ P +K S +R + E ++
Sbjct: 61 AGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHEEAKE 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+ M R +E K L +GVP ++ EAEAQCA+L
Sbjct: 121 TGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAA 180
Query: 161 SSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQ 218
S D D F A + R + E+ E +D LG R I L +LLG DY +
Sbjct: 181 SEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGCDYLE 240
Query: 219 GVRGLGPESACQIVKSVG 236
+ +GP +A ++++ G
Sbjct: 241 PIPKVGPNTALKLIREHG 258
>gi|406608120|emb|CCH40554.1| Flap endonuclease [Wickerhamomyces ciferrii]
Length = 778
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 60/293 (20%)
Query: 1 MGVKNLWDIL-ESCKKTLPL---------HHLQNKRVCIDLSCWIVQL--QNVNKSYRP- 47
MGV ++W+I+ + + LP H + R+ ID W+ + ++N+ +R
Sbjct: 1 MGVPSVWEIIKDGFDERLPFIILVTNFYKEHQRPLRLAIDAFQWLFEAIGSDINQFHRLN 60
Query: 48 ---QTDKLFLRGLFH-RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN 103
Q K+ +FH +++ LI+LN + V DG + ++R N QDD N
Sbjct: 61 SKLQIGKIL--QVFHSKIKFLISLNVSFVLVFDGPLKPF----FKRNFN-----VQDD-N 108
Query: 104 L---------DKMSSLRRNMG-----SEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCAL 149
L D+ + ++ MG S+ IKE K + +E EAEA+ A
Sbjct: 109 LIEFESKIFDDEYLNFKKTMGDVNFASKDPQYIKELKKELTKWNISYIESPAEAEAEAAN 168
Query: 150 LNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG----------------YVVCYEMDD 193
L + D S+DSD +FGA + R+ E +V ++
Sbjct: 169 LQKLGIVDYVLSNDSDSIIFGATKILRNFSKFEDDKPAGASMMKCKSSSYYWVTPIDLRK 228
Query: 194 IERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIAS 246
I + GF + ++ ++L+G+DY+ GV+GLG E A Q+ S N + +A+
Sbjct: 229 ITSRTGFDQWRVLLYSILVGADYNHGVKGLGSERASQVALS-STNYIKNYVAT 280
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
+ G F+R L+ ++V DG P +K S +R + E + D +
Sbjct: 64 IMGTFYRTIRLLENGIKPVYVFDGKPPQMKSSELEKRADRRQEAQKSLEKAEEAGDATGI 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
DK S + S + KE L +GVP +E EAEAQCA + + D
Sbjct: 124 DKFSKRLVKVTSTHTTECKELLKL---MGVPFVEAPCEAEAQCAAMVKAGKVYATATEDM 180
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + +++D + + R+ I L +LLG DY ++G
Sbjct: 181 DALTFGSPVLLRHMTFSEARKMPIQEFQLDSVLETMEMSRDEFIDLCILLGCDYCNSIKG 240
Query: 223 LGPESACQIVK 233
+GP+ A ++++
Sbjct: 241 VGPKRAIELMR 251
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 32/263 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLP-LHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----- 53
MGV NL D++ E K T+ L L+ K V ID + Q + +P L
Sbjct: 1 MGV-NLKDLIPEEAKMTIEDLRMLRGKIVVIDGYNALYQFLTAIR--QPDGTPLMDSQGR 57
Query: 54 ----LRGLFHRLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGSEVTQDDKNLDK 106
L GLF+R ++ +V DG P IK + R+ S+ ++
Sbjct: 58 ITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYEEALRKGD 117
Query: 107 MSSLRRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + RR M ++ + M+++AK L ++G+P ++ E EAQ A + + S D
Sbjct: 118 IEAARRYAMMSAKLTDEMVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDAWASASQD 177
Query: 164 SDIFLFGARTVYRDIWL-GERG------YV----VCYEMDDIERKLGFGRNSLITLALLL 212
D LFG+ + R++ + G+R Y+ E+ + KLG R LI +A+L+
Sbjct: 178 YDSLLFGSPRLIRNLTISGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQLIYVAILI 237
Query: 213 GSDYS-QGVRGLGPESACQIVKS 234
G+DY+ GV+G+GP+ A Q+VK+
Sbjct: 238 GTDYNPDGVKGIGPKKALQLVKA 260
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 136/306 (44%), Gaps = 31/306 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLS----CWIVQLQNVNKSYRPQTDKL 52
MG+K+L+ I+ E+ + ++N ++V ID S +++ +++ + +T +
Sbjct: 1 MGIKHLYQIIQENAPDAVKAGEIKNHFGRKVAIDASMSIYSFLIAVRSDGQQLTSETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDD--------- 101
L G+F+R ++ ++V DG+ P +K +R SE +
Sbjct: 61 TSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHEEAKEVGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ ++K S + E + +E K L +GVP ++ EAEAQCA+L S
Sbjct: 121 EEVEKFSRRTVRVTREHN---EECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L R + L +LLG DY
Sbjct: 178 EDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
+ +GP +A ++++ G L+++ E + + K + E W +K + L + +
Sbjct: 238 IPKVGPNTALKLIRDHGS---LEQVV-EAIKSDPKKKYTIPEDWPYK---EARELFFDPD 290
Query: 280 VNGTDH 285
V DH
Sbjct: 291 VRKADH 296
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 136/339 (40%), Gaps = 61/339 (17%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ------------LQNVNKS 44
MG+KNL ++E S K+ L + V ID S + Q L N N
Sbjct: 1 MGIKNLTSLIEENAPSAIKSNDLKSYSGRIVAIDASTSMYQFLIAINTEMGAALMNANGE 60
Query: 45 YRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQD 100
L+G+F+R L+ I+V DG P +K Y RR + ++ +
Sbjct: 61 TTSH-----LQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKRYARRKEAEQQLEEA 115
Query: 101 DK--NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++ N + + ++ S +E K L +GVP ++ EAEAQCA LC G
Sbjct: 116 NEVGNSEDVQKFQKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCA-----ELCKG 170
Query: 159 -----CFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALL 211
S D D G + R + E + ++ E++ + L + + L +L
Sbjct: 171 GKAWATGSEDMDSLTLGTTILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCIL 230
Query: 212 LGSDYSQGVRGLGPESAC-QIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF----- 265
LG DY ++G+GP+ + I K V+Q I R KN E + +
Sbjct: 231 LGCDYCDTIKGIGPKKSFDMITKHKNIQTVIQNI--------DRTKNPIPESFPYEEVRE 282
Query: 266 --------KCNNKEESLNQEINVNGTDHSLQRETPFSQV 296
KC + E + +E +V+G L E F++
Sbjct: 283 LFKNPDVIKCQDLPEIVWKEPDVDGLIKYLVGEMGFNET 321
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 22/284 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ S K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPSAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKN 103
L GLF+R L+ N ++V DG P +K +RL E +D+
Sbjct: 61 TTSHLSGLFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQRREEAQKQMDSIKDEGT 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ ++ + + EA+ L +G+P + EAEAQCA L S D
Sbjct: 121 VAEVMKFEKRLVRVSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARGGKVFAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFG--RNSLITLALLLGSDYSQGVR 221
D + + R + E + ++ E G + I L +LLG DY + ++
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAIAGLDMTKEQFIDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF 265
G+GP +A +++K G L +I S ++ K E W +
Sbjct: 241 GVGPVTAFKLIKEHGS---LDKIVEYINSNPEKTKFKVPENWPY 281
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 27/289 (9%)
Query: 1 MGVKNLWDILESCKK----TLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP--QTDK--- 51
MG+ L +L+ K + + +R+ ID S + Q +S TD
Sbjct: 1 MGIHQLSKLLQHSAKPAIKNRDISYFTGQRIAIDASLSLYQFLIAVRSDGAGLTTDSGDT 60
Query: 52 -LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLST-----YRRRLNSGSEV-----TQD 100
L G F+R ++ +FV DG P +KLS +R + E T D
Sbjct: 61 TSHLIGTFYRTIRIVTSGIKPLFVFDGLPPELKLSHELEKRKEKRDAAAKEYEMALETGD 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+ ++K + + + + + K L + VP + EAEA A L ++ + D
Sbjct: 121 KEQIEKFDKRKVKVTKKH---VDDCKKLLDLMKVPYVVAPSEAEAYAAYLCIKGVVDAVA 177
Query: 161 SSDSDIFLFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D FGA + R++ E +V Y + +I ++L N I + ++LG DY +
Sbjct: 178 TEDMDALTFGAPILLRNLNAAENKKLPIVEYNLKEILKELKINHNQFIDVCIMLGCDYVK 237
Query: 219 GVRGLGPESACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEG-WSF 265
+RG GP+ A +++ D +L++ + L K +S+ + W+F
Sbjct: 238 PLRGFGPKRAYEMILKHKDIETILEKEKIKSLESTKNENSSEADDIWNF 286
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT--DKL-- 52
MG+K L +L K + + + ID S + Q + + T D+
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKMS 108
+ G F+R LI ++V DG P +K +R+ N+ Q DK L++
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGD 120
Query: 109 SLR-RNMGSEFSCMIKE----AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + + M KE K L +G+PC+E EAE CA L C + D
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGSCAALVKAGKCYATATED 180
Query: 164 SDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D G+ V R + + + Y + I + GF I L +LLG DY + ++
Sbjct: 181 MDALTLGSEHVVRKFSASDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVK 233
G+GP +A ++++
Sbjct: 241 GVGPITAFELIQ 252
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 111/261 (42%), Gaps = 21/261 (8%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDK---- 51
MGVK L +++ K L +L ++V ID S + Q L V +S Q
Sbjct: 1 MGVKGLNQLIKEHSPHAYKEFQLKNLFGRKVAIDASMCLYQFLIAVRQSDGQQLTNEDGE 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G F+R ++ N ++V DG P +K +RL E + + S
Sbjct: 61 TTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMDQIKDEGS 120
Query: 110 LRRNMGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ M E + EAK L +G+P + EAEAQCA L S D
Sbjct: 121 VAEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKVYAAASED 180
Query: 164 SDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFG--RNSLITLALLLGSDYSQGVR 221
D + + R + E + ++ E G G ++ I L +LLG DY + ++
Sbjct: 181 MDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKDQFIDLCILLGCDYCETIK 240
Query: 222 GLGPESACQIVKSVG--DNVV 240
G+GP +A +++K G DN+V
Sbjct: 241 GVGPVTAYKLIKEHGSLDNLV 261
>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii 17XNL]
gi|74882336|sp|Q7RME3.1|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
Length = 480
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDGDQYGNLMNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ K
Sbjct: 61 ETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKAEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAEAQCA L + +
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATE 180
Query: 163 DSDIFLFGARTVYRDI------------WLGERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
Length = 375
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 31/264 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDGDQYGNLMNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---LNSGSEVTQDDKNLD 105
+ GL R L+ I+V DG+ P +K S +R E+ K
Sbjct: 61 ETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLIKAKEEG 120
Query: 106 KMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ +++ G K EAK L +G+P +E EAEAQCA L + +
Sbjct: 121 NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHATATE 180
Query: 163 DSDIFLFGARTVYRDI------------WLGERGYVVC-YEMDDIERKLGFGRNSLITLA 209
D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 181 DADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFIDFC 240
Query: 210 LLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 241 ILCGCDYCDTIKGIGSKTAYNLIK 264
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR+ + ++ + L+KM
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQ 124
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +G+P + EAEAQCA L + S D D +
Sbjct: 125 ERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L + L ++LG DY + +RG+GP +
Sbjct: 184 RTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVT 243
Query: 228 ACQIVKSVG 236
A +++K+ G
Sbjct: 244 ALKLIKTHG 252
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR+ + ++ + L+KM
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQ 124
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +G+P + EAEAQCA L + S D D +
Sbjct: 125 ERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L + L ++LG DY + +RG+GP +
Sbjct: 184 RTPFLLRHLTFSETKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVT 243
Query: 228 ACQIVKSVG 236
A +++K+ G
Sbjct: 244 ALKLIKTHG 252
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 25/255 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQ-TDK--- 51
MG+K L +L C ++++ ID S I Q L V +S Q TD+
Sbjct: 1 MGIKGLSKLLAEHSPGCSMERKFQSYLDRKIAIDASMHIYQYLMVVGRSGESQLTDENGQ 60
Query: 52 --LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD--------D 101
L G+ R ++ ++V DG P +K +R + + +D D
Sbjct: 61 VTAHLIGVLSRTCRMLEAGIKPVYVFDGKPPTLKGGELAKRKDKRDQAEKDLEVARETGD 120
Query: 102 KN-LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
K+ ++K + + E + +E L LGVP E EAEA CA + L G
Sbjct: 121 KDAIEKAAKRTVRVSKEQN---QEVMRLVKLLGVPVFEAPCEAEATCAAMCKAGLVHGAA 177
Query: 161 SSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D F + R++ ++ + Y+ D + + L + I L +L G DY+
Sbjct: 178 TEDMDTLTFACPRLIRNLMAPASQKKDIAEYDFDKVLKGLDLDYDQFIDLCILCGCDYTD 237
Query: 219 GVRGLGPESACQIVK 233
+RG+GP +A Q+++
Sbjct: 238 SIRGIGPVTALQLIR 252
>gi|392569258|gb|EIW62431.1| hypothetical protein TRAVEDRAFT_68878 [Trametes versicolor
FP-101664 SS1]
Length = 1191
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 110/288 (38%), Gaps = 65/288 (22%)
Query: 1 MGVKNLWDILESCKKTLPL-------------HHLQNKRVCIDLSCWI---VQLQNVNKS 44
MGV LW+IL ++ L H ++ R+ +D W+ +
Sbjct: 1 MGVPKLWEILNKAGESRALAQLAVVDGFDKNAHGTRSFRLGVDAGIWLRHALHSAGGKDE 60
Query: 45 YRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL 104
YR + +L + LF+RL L L+F+ DG R R Q+ +
Sbjct: 61 YRGDSPELCM--LFYRLCRLSRFPFTLLFIFDG----------RSR-------PQEKRGS 101
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
S + +F +I+ G+ C E EAEA+ LN D + D+
Sbjct: 102 RMGKSGTHQLAPDFQKLIR-------IFGMDCREAKGEAEAELGRLNALGHIDAVLTDDA 154
Query: 165 DIFLFGARTVYRDIWLGERG--------------------YVVCYEMDDIERKLGFGRNS 204
D FLFGAR + +++ L G Y D E +L R
Sbjct: 155 DTFLFGARMLLKNVSLNLTGNKAHPALNLNGKPCDQHATVYTAQAFRDHPEVRL--SRGG 212
Query: 205 LITLALLLGSDYSQGVRGLGPESACQIVK-SVGDNVVLQRIASEGLSF 251
LI +ALL G DY GV G+G A + + GD ++ + + +F
Sbjct: 213 LILIALLSGGDYDSGVFGVGTGVAHALARLDYGDQLIRNYTSLDAATF 260
>gi|219121896|ref|XP_002181293.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407279|gb|EEC47216.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 696
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 42/241 (17%)
Query: 27 VCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLST 86
+ +DLS WI + +++ L +F R L++L LIFV +G
Sbjct: 65 LAVDLSIWICE-SLTSRAMTENHANPALHLVFSRTMKLLSLGIKLIFVLEG--------- 114
Query: 87 YRRRLNSGSEVTQDDKNLDKMSSLR-RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145
+RR+ + K + R R G+ F ++ L LG+P E EA
Sbjct: 115 -KRRVQTAG----------KRDNFRNRRSGTTFWKAGEQCHDLLTRLGIPVFRAKAEGEA 163
Query: 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEM------------ 191
CALL+ ++ DG S+D D LFGAR VY + G V+ Y++
Sbjct: 164 LCALLSQRNIVDGVISNDGDCLLFGARVVYTKFSVENLVEGSVMRYDLGNLRALIDHAGD 223
Query: 192 ----DDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVKSVG-DNVVLQRIA 245
D + L R L++ ALL GSD + G+ +G + A + ++ DN + +A
Sbjct: 224 KEASDQLTGSLSLSRFDLLSFALLTGSDLAGNGLPKVGHKKAIRFIRKCQIDNPLTTEMA 283
Query: 246 S 246
S
Sbjct: 284 S 284
>gi|402594063|gb|EJW87990.1| XPG domain-containing protein [Wuchereria bancrofti]
Length = 508
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV ++W+ ++ + + + L+NKR+ ID W+ ++ + ++ T K +L + R
Sbjct: 1 MGVTSMWEYVQKFVQPVNISVLRNKRIAIDGHTWLCEVLRGSVAHCSTTRKPYLSTFYTR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR-------- 112
R+L+ I V DG ++ G E T D + M +R+
Sbjct: 61 CRSLLEEGVEPIVVFDG-------------IDEG-ERTNVDYGISSMRKVRKRGSKYWTS 106
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ E ++E K L S+GV +E E EAQCA L + S S +++
Sbjct: 107 ELKQEMVPKVEEIKMLLNSMGVRWMESKLEGEAQCAQLEQRVFGEE-EKSFSKLYVGNKP 165
Query: 173 TVYRDIWLG---ERGY-------VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVR 221
+ I L E G+ ++ MD ++ L R+ LI + +++G DY+Q G+
Sbjct: 166 SFVLKIMLKFEVEFGFGGKVQNNILHLSMDYLDETLCLSRSCLIAMTIMIGCDYAQKGIP 225
Query: 222 GLGPESACQIV 232
G+G +A +IV
Sbjct: 226 GVGLVTALEIV 236
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 30/287 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCID----LSCWIVQLQNVNKSYRPQTDKL 52
MG+KNL ++ ++ + ++N ++V ID L ++V +++ + T +
Sbjct: 1 MGIKNLAQVIKDNAPDAIKEGEIKNQFGRKVAIDASMSLYSFLVAVRSDGQQLMSDTGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L GLF+R ++ ++V DG+ P +K +R SE T
Sbjct: 61 TSHLMGLFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQESHEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ ++K S + E + EA+ L +GVP + EAEAQCA+L S
Sbjct: 121 EEVEKFSRRTVRVTREHNA---EAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E+ E +D + L I L +LLG DY
Sbjct: 178 EDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDAVLSGLEMDLPQFIDLCILLGCDYVDP 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
V+G+GP+ A +++ ++ L+++ S K K + + W ++
Sbjct: 238 VKGIGPKVALALIR---EHKTLEKVVE---SVTKSGKYTFPDDWPYQ 278
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 35/267 (13%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ E +KT+ L N+ V +D + Q + +P L
Sbjct: 1 MGVTELGKLIPEGVRKTVEFTQLSNRIVALDAYNALYQF--LASIRQPDGTPLMDSKGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GL +R + ++V DG P K RR E DK + +
Sbjct: 59 TSHLSGLLYRTINFLENRIWPVYVFDGKPPEEKTLEIARRRKVREEAM--DKWVKLLEEG 116
Query: 111 RRNMGSEFSC--------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+R +++ M+++AK L +G+P ++ + + EAQ A++ E S
Sbjct: 117 KREEARKYAQRALFLTDDMVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKAWAAGSQ 176
Query: 163 DSDIFLFGARTVYRDIWLGER-------GYV----VCYEMDDIERKLGF-GRNSLITLAL 210
D D LFGA + R++ + R Y+ E++++ + L R LI LA+
Sbjct: 177 DYDSLLFGAPRLVRNLAITGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQLIDLAI 236
Query: 211 LLGSDYS-QGVRGLGPESACQIVKSVG 236
LLG+D + GV G+GP+ A ++++ G
Sbjct: 237 LLGTDLNPDGVPGIGPQRALRLIQEFG 263
>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
gi|74991237|sp|Q4Z015.1|FEN1_PLABA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
Length = 478
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 38/267 (14%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL--------QNVNKSYRPQ 48
MG+K L D + K + + +L + V ID S + Q Q N
Sbjct: 1 MGIKGLTKFIADTAPNAIKEIKIENLMGRVVAIDASMSLYQFIIAIRDGDQYGNLMNESG 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL---- 104
+ GL R L+ I+V DG+ P +K S +R E Q + L
Sbjct: 61 ETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKR----GEKRQKAEELLIKA 116
Query: 105 --DKMSSLRRNMGSEFSCMIK---EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
+ + +++ G K EAK L +G+P +E EAEAQCA L +
Sbjct: 117 KEENLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMAHAT 176
Query: 160 FSSDSDIFLFGARTVYRDI------------WLGERGYVVC-YEMDDIERKLGFGRNSLI 206
+ D+D +FG + + R++ +RGY++ ++ + + L + I
Sbjct: 177 ATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMDEFI 236
Query: 207 TLALLLGSDYSQGVRGLGPESACQIVK 233
+L G DY ++G+G ++A ++K
Sbjct: 237 DFCILCGCDYCDTIKGIGSKTAYNLIK 263
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 31/262 (11%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL----------QNVNKSYR 46
MG+K L D+ + L + +L ++V +D S I Q Q +N+S
Sbjct: 1 MGIKGLTNLISDVAPKAIRQLEMKNLFGRKVAVDASMSIYQFLIAVRQQDGQQLMNESGE 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKN--- 103
+ L G F+R ++ +V DG P +K ++R +E T++ ++
Sbjct: 61 TTS---HLMGFFYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRAEATEEGEDAKE 117
Query: 104 ------LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+DK+S + E + +E + L +G+P + EAEAQCA L L
Sbjct: 118 TGTVEEIDKLSRRTVRVTKEHN---EECQRLLKLMGIPFIIAPSEAEAQCAELCRGGLVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSD 215
G S D D F + + R + E+ + E+ ++ + + + I + +L G D
Sbjct: 175 GTGSEDMDTLTFSSPIILRHLTFSEQRKLPIDVIELSEVLKGMELTMDEFIDMCILSGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVGD 237
Y + +G ++A +++K GD
Sbjct: 235 YVDPLPKIGAKTALKLIKDHGD 256
>gi|170117214|ref|XP_001889795.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635261|gb|EDQ99571.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 533
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 101/251 (40%), Gaps = 41/251 (16%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNK-------------RVCIDLSCWIVQLQNVNKSY-- 45
MGV + ILE ++ L K RV +D+S WI Q Q S
Sbjct: 1 MGVPGISKILELARRVQTLTEFATKEGFQLNPHGDNMVRVGVDVSVWICQAQAAVHSMPR 60
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLD 105
Q + LR +F R+ L+A + IF++DG R R+ G V D +
Sbjct: 61 TQQGENPALRIIFFRICHLLAQSIQPIFIADGP--------NRPRVKRGVNVRADKPHW- 111
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
M + ++EA G P EAEA+ A L L ++D D
Sbjct: 112 --------MEAYVKDFVQEA-------GCPMYHAPGEAEAELAQLTAHGLIKAVLTTDFD 156
Query: 166 IFLFGARTVYRDIWLGERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223
+FLFG + + + G + Y D I+ + LI +A+L G DY Q G+ G
Sbjct: 157 VFLFGGTYMIKPPNVKTDGDRITYYTSDGIQAQTSLTCAKLIFIAILSGGDYDQVGLPGC 216
Query: 224 GPESACQIVKS 234
G + A Q+ +
Sbjct: 217 GLKIAHQLAQG 227
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 25/258 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNV--NKSYRPQTDKL-- 52
MG+K L +L ++ K + ++ +R+ +D S I Q V T++
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQ-----D 100
L+G+F+R L+ ++V DG P +K Y +R ++ E+T+ D
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
++K S + + + +E K L +GVP +E EAEA+CA L + +
Sbjct: 121 KDAIEKFSKRTVKVTKQHN---EECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVA 177
Query: 161 SSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
S D D FGA R + ++ V+ +E+ + +L + I L +L G DY
Sbjct: 178 SEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCD 237
Query: 219 GVRGLGPESACQIVKSVG 236
++G+G ++A ++++ G
Sbjct: 238 SIKGIGGQTALKLIRQHG 255
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 13/247 (5%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ N ++V DG P +K +RL E + +N+ +++
Sbjct: 29 LSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKRLLRKEEAIKQMENIKDEATVEDM 88
Query: 114 MGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ E + +EAK L +G+P ++ EAEAQCA L + S D D
Sbjct: 89 VRYEKRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAELARKGKVFAAASEDMDTI 148
Query: 168 LFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
+ + R + + E + + E + L +++ I L +LLG DY + ++G+GP
Sbjct: 149 CYEPPFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGCDYCETIKGVGP 208
Query: 226 ESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 285
+A +++K G L +I + + K E W + +E L+ E+ N D
Sbjct: 209 VTAFKLIKEHGS---LDKIVEFLRANPDKTKYKVPENWPY-TEARELFLHPEVQ-NADDI 263
Query: 286 SLQRETP 292
+L+ + P
Sbjct: 264 NLKWKEP 270
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR+ + ++ + L+KM
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQ 124
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +G+P + EAEAQCA L + S D D +
Sbjct: 125 ERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L + L ++LG DY + +RG+GP +
Sbjct: 184 RTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVT 243
Query: 228 ACQIVKSVG 236
A +++K+ G
Sbjct: 244 ALKLIKTHG 252
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 25/258 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNV--NKSYRPQTDKL-- 52
MG+K L +L ++ K + ++ +R+ +D S I Q V T++
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIK----LSTYRRRLNSGSEVTQ-----D 100
L+G+F+R L+ ++V DG P +K Y +R ++ E+T+ D
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
++K S + + + +E K L +GVP +E EAEA+CA L + +
Sbjct: 121 KDAIEKFSKRTVKVTKQHN---EECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVA 177
Query: 161 SSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
S D D FGA R + ++ V+ +E+ + +L + I L +L G DY
Sbjct: 178 SEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCD 237
Query: 219 GVRGLGPESACQIVKSVG 236
++G+G ++A ++++ G
Sbjct: 238 SIKGIGGQTALKLIRQHG 255
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L ++ K++ + ++ +++ ID S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIV--VGRSGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F R L+ ++V DG P +K +R + +E T+D
Sbjct: 59 GEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDLSEALET 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + + + + K L +GVP +E EAEAQCA L
Sbjct: 119 ANKEDIEKFSKRTVKVTKQHN---DDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYA 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FG+ R + ++ V+ +E+ I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G +A ++++ G
Sbjct: 236 CDSIRGIGGLTALKLIRQHG 255
>gi|449016220|dbj|BAM79622.1| probable flap structure-specific endonuclease 1 [Cyanidioschyzon
merolae strain 10D]
Length = 380
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKM 107
L G+F+R L+ L I+V DG P +K + +R + E Q ++ +L+
Sbjct: 65 LSGVFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRREEDEQAAAKAREEGDLELY 124
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ R + + I K L +G+P +E EAEAQCA+L L S D D
Sbjct: 125 AKYARRVNKVSAETIDNVKRLLRLMGIPVVEAPSEAEAQCAVLTRAGLAYATASEDMDAL 184
Query: 168 LFGARTVYRDIWL-----GERG------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
FG + R+++ ER + + ++D LG + I + +L G DY
Sbjct: 185 TFGTPLLIRNLFAALASGAERKDRKPSEFSLAITLED----LGISMDQFIDICILCGCDY 240
Query: 217 SQGVRGLGPESACQIVKSVG 236
+ + +GP A +VK G
Sbjct: 241 TCTIPKIGPYRALMLVKQHG 260
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 27/240 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQ------------LQNVNKSYRPQTDKLFLRGLFHRL 61
KK + L L+NK V ID I Q L+N N + G+F++
Sbjct: 11 KKEISLKFLKNKTVAIDAMNVIYQFLSSIRLRDGSPLKNKNGEITSTYN-----GIFYKT 65
Query: 62 RALIALNCGLIFVSDGSIPAIKLSTYRRR-------LNSGSEVTQDDKNLDKMSSLRRNM 114
++ I+V DG +K T R L+S E + + NL++M +
Sbjct: 66 IYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYLEAKEQN-NLEEMQKYAKRA 124
Query: 115 GSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTV 174
+I +K L +G+P ++ E EAQCA L + S D D L+GA V
Sbjct: 125 NFLDKKIIDNSKKLLELMGIPYIDAPSEGEAQCAELVKANDAFCVISQDYDSILYGAENV 184
Query: 175 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
++I + + E++ +L + LI +A+L+G+DY+ G++G GP+ A VK
Sbjct: 185 VKNITSSNKD-IELIELEKTLSELNVSLDQLIDVAILIGTDYNPGGLKGFGPKKAIDTVK 243
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 110/261 (42%), Gaps = 29/261 (11%)
Query: 24 NKRVCIDLSCWIVQL-------QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
+++ ID S I Q NV +S +T L G+F+R ++ ++V D
Sbjct: 28 GRKIAIDASMCIYQFLIAVRQDGNVLQSEDGETTS-HLMGMFYRTIRMLENGIKPVYVFD 86
Query: 77 GSIPAIKLSTYRRRLNSGSEVTQ---------DDKNLDKMSSLRRNMGSEFSCMIKEAKA 127
G P +K + +R +E + + +N+DK S + + + + K
Sbjct: 87 GKPPQLKSAELEKRGERRAEAEKMLAKAQELGEQENIDKFSKRLVKVTKQHN---DDCKK 143
Query: 128 LGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGY 185
L +GVP +E EAEA CA L E + D D FG + R + E +
Sbjct: 144 LLTLMGVPYIEAPCEAEASCAALVKEGKVFATATEDMDGLTFGTNVLLRHLTASEAKKLP 203
Query: 186 VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIA 245
V + + I + +G I L +LLG DY ++G+GP+ A +++ G
Sbjct: 204 VQEFHFNRILQDIGLTSEQFIDLCILLGCDYCGTIKGIGPKRAIDLIRQHGS-------I 256
Query: 246 SEGLSFVKRAKNSKKEGWSFK 266
E L + +K+ E W +K
Sbjct: 257 EEILENIDTSKHPAPEDWLYK 277
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L C K +++ +D S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKCMKEQKFESYFGRKIAVDASMSIYQFLIV--VGRTGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F R L+ ++V DG P +K +R + ++ T+D
Sbjct: 59 GEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLSAAIEE 118
Query: 101 -DK-NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
DK ++K S + + + K K LGL +GVP +E EAEAQCA L
Sbjct: 119 GDKEGIEKFSKRTVKVTKQHNEDCK--KLLGL-MGVPVVEAPSEAEAQCAALCKNGKVYA 175
Query: 159 CFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + ++ V+ ++M + +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGACKFLRHLMDPSSKKIPVMEFDMAKVLEELNLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
++G+G +A ++++ G
Sbjct: 236 CDNIKGIGGMTALKLIRQHG 255
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR+ + ++ + L+KM
Sbjct: 53 LMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAEATTELEKMKQ 112
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +G+P + EAEAQCA L + S D D +
Sbjct: 113 ERRLVKVSKEHNEEAQKLLGL-MGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCY 171
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L + L ++LG DY + +RG+GP +
Sbjct: 172 RTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVT 231
Query: 228 ACQIVKSVG 236
A +++K+ G
Sbjct: 232 ALKLIKTHG 240
>gi|302508023|ref|XP_003015972.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
gi|291179541|gb|EFE35327.1| Rad2-like endonuclease, putative [Arthroderma benhamiae CBS 112371]
Length = 821
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 38/217 (17%)
Query: 27 VCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLST 86
+ +D+S W+ Q+Q P LR LF RL LI+L IFV DG
Sbjct: 88 LAVDISIWLFQVQAAQGGTNPA-----LRTLFFRLTRLISLPIQPIFVFDGP-------- 134
Query: 87 YRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQ 146
+R G V+++ + I+ ++ L PC EAEA+
Sbjct: 135 HRPDYKRGRLVSKN----------------AAAAQIELSRKLIELFSYPCHMAPGEAEAE 178
Query: 147 CALLNLESLCDGCFSSDSDIFLFGARTVYRDI------WLGERGYVVCY--EMDDIERKL 198
CA L + D S+D D +FG++ + G +V Y E +D + K+
Sbjct: 179 CAKLQQAGVVDAVMSNDVDALMFGSKVTLLNYSKGSAKQSGAATHVDLYNTEAEDGDSKV 238
Query: 199 GFGRNSLITLALLLGSDYSQ-GVRGLGPESACQIVKS 234
++ +ALL G DYS GV GP+ A +I ++
Sbjct: 239 TLDTRGMVLVALLSGGDYSPAGVALCGPKLAVEIARA 275
>gi|390596487|gb|EIN05889.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 550
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 99/269 (36%), Gaps = 69/269 (25%)
Query: 1 MGVKNLWDILESCKKTLPLHHL------------QNKRVCIDLSCWIVQLQNVNKSYRPQ 48
MGV LWDIL L HL + R+ ID S W + P+
Sbjct: 1 MGVAGLWDILSPAGTLRSLTHLAVVDGFLANPDARGLRIGIDASIWFFHAAYGREGENPE 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMS 108
LR LF R L+ + +FV DG R ++ G
Sbjct: 61 -----LRTLFFRCCKLMTVPFLPVFVFDGP--------QRPKVKRG-------------- 93
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ +G + M+K K + + G EAEA+ A L+ + D S D D FL
Sbjct: 94 ---KRIGGKEHWMVKGMKNIIEAFGFEWRTAPGEAEAELAYLSRVGIIDAILSDDVDNFL 150
Query: 169 FGARTVYRD---IWLGERGYVV-------------------CYEMDDIERKLGFGRNSLI 206
FGA TV R+ G R + V E DI+ R +I
Sbjct: 151 FGATTVIRNPSATLSGNRSHSVKNADGRDDGWHSRVFTAKAISEHPDIQ----LTRPGMI 206
Query: 207 TLALLLGSDYSQ-GVRGLGPESACQIVKS 234
+ LL G DY Q GV+G GP A + K+
Sbjct: 207 LIGLLSGGDYDQGGVQGCGPGVAHALAKA 235
>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
Length = 353
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 128/282 (45%), Gaps = 24/282 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQN---KRVCID-LSCWIVQLQNVNKSYRPQTDKL--FL 54
MG+K+ I E+ + ++N +RV ID + +++ +++ + ++ + L
Sbjct: 1 MGIKSECIISENAPDAVKSGEIKNQFGRRVAIDAIYSFLIAVRSDGQQLTNESGETTSHL 60
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL---------NSGSEVTQDDKNLD 105
G+F+R ++ ++V DG+ P +K +R ++ T ++++
Sbjct: 61 MGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGTTEDVE 120
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
K S + E + K + LGL +G+P L+ EAEAQCA+L G S D D
Sbjct: 121 KFSRRTVRVTREHNAECK--RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMD 177
Query: 166 IFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223
F A + R + E + ++ +D + LG + L +LLG DY + +
Sbjct: 178 TLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKV 237
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF 265
GP +A ++++ D+ L+++ E + + K E W +
Sbjct: 238 GPNTALKMIR---DHGTLEKVV-EAIESDPKKKYVIPEDWPY 275
>gi|335433586|ref|ZP_08558406.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
gi|334898592|gb|EGM36696.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 22/253 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MG +L DI + K + L V +D W+ + + + + +D ++
Sbjct: 1 MGNADLRDI--AVIKDVSFEELGGSIVAVDAHNWLYRY--LTTTVKWTSDDIYTTADGEE 56
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR------LNSGSEVTQDDKNL 104
L G+ L + +FV DG++ +K +RR E +++ +
Sbjct: 57 VANLVGVIQGLPKFFEADVTPVFVFDGAVTDLKDDEVKRRREQREQYEEDLEAAREEGDA 116
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+++ L +I+ + L L VP ++ E EAQ A + D + D
Sbjct: 117 IQVARLESRTQRLTDVIIETTRKLLGLLDVPIVDAPAEGEAQAAYMARRGDADYVGTEDY 176
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D LFGA R + ++ +E E L + L+ +ALL G+D+++GVRG G
Sbjct: 177 DALLFGAPYTLRQLTSSGDPELMDFEATLAEHDLSW--EQLVDVALLCGTDFNEGVRGYG 234
Query: 225 PESACQIVKSVGD 237
P++A + ++ GD
Sbjct: 235 PKTAVKAIREHGD 247
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 26/255 (10%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG++ L DI + L + +++ ID S I Q V ++ +T
Sbjct: 1 MGIQGLAKLIADIAPGAIREQELKNYFGRKIAIDASMSIYQFLIAVRHDGQVLQTESGET 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------D 100
L G+F+R ++ ++V DG P +K +R SE + D
Sbjct: 61 TS-HLMGMFYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQLAQAQEAGD 119
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+N+++ + + + + +E K L +G+P LE EAEA CA L G
Sbjct: 120 SENVERFNKRLVKVTKQHN---EECKTLLTLMGIPYLEAPCEAEASCAALVKSGKVYGTA 176
Query: 161 SSDSDIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D FG + R + E + + ++ I ++ G + I L +LLG DY +
Sbjct: 177 TEDMDGLAFGTTILLRRMTASEAKKLPIQEFHLNKILQETGLSQEEFIDLCILLGCDYCE 236
Query: 219 GVRGLGPESACQIVK 233
+RG+GP+ A ++++
Sbjct: 237 TIRGIGPKRAIELIR 251
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 111/263 (42%), Gaps = 25/263 (9%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYRP 47
MGVK L +++ K L +L +++ ID S + Q Q +
Sbjct: 1 MGVKGLNQLIKEHAPEAFKEFQLKNLFGRKIAIDASMCLYQFLIAVRQAEGQQLTNDEGE 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKM 107
T L G+F+R L+ + ++V DG P +K +RL E + +N+
Sbjct: 61 TTS--HLSGMFYRTIRLVENSIKPVYVFDGKPPVLKGGELEKRLLRREEAIKQRENIKDE 118
Query: 108 SSLRRNMGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++ + E + EAK L +GVP + EAEAQCA L S
Sbjct: 119 GTIEDMVRYEKRTVRVTREQNDEAKKLLELMGVPYVNAPCEAEAQCAELARGGKVFAAAS 178
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D + + R + E + + + + + L R + I L +LLG DY +
Sbjct: 179 EDMDTICYQPPFLLRHLTFSEARKMPIDQIQYEKVLEALEMDRETFIDLCILLGCDYCET 238
Query: 220 VRGLGPESACQIVKSVG--DNVV 240
+RG+GP +A +++K G D +V
Sbjct: 239 IRGVGPVTAFKLIKEHGSLDKIV 261
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 118/288 (40%), Gaps = 33/288 (11%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+ K + DI K + + + +++ ID S + Q +S Q +
Sbjct: 1 MGILGLSKLIADIAPYAVKEMEIKNYFGRKIAIDASMSLYQFLIAVRSEGAQLVSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIK----------LSTYRRRLNSGSEVTQD 100
L G F+R L+ ++V DG P +K + L +E D
Sbjct: 61 TSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNKRAERREEAEKELQKATEAG-D 119
Query: 101 DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
++DK + + + S +EAK L +GVP ++ EAEAQCA L
Sbjct: 120 TASVDKFNRRLVKVTKQRS---EEAKQLLKLMGVPVVDAPCEAEAQCAALVKSGKVFAAA 176
Query: 161 SSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ 218
+ D D FGA + R + E + V + ++++ + L +N I L +LLG DY
Sbjct: 177 TEDMDALTFGAPVLLRHLTFSEARKMPVQEFHLNNVLQGLELKQNEFIDLCILLGCDYCG 236
Query: 219 GVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+RG+GP+ A +++ R E L + K W ++
Sbjct: 237 SIRGVGPKRAIDLIRQ-------HRTLDEVLKNIDTEKYQPPTDWDYE 277
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 29/260 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L +L ++ K + ++ +++ ID S I Q V R T+ L
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLIV--VGRSGTEMLTNEA 58
Query: 53 -----FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
L+G+F R L+ ++V DG P +K +R + ++ T+D
Sbjct: 59 GEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDLTEALET 118
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
+ ++K S + + + ++ K L +GVP +E EAEAQCA L
Sbjct: 119 GNKEEIEKFSKRTVKVTKQHN---EDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGKVYA 175
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMD--DIERKLGFGRNSLITLALLLGSDY 216
S D D FGA R + + E D I +L + I L +L G DY
Sbjct: 176 VASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSGCDY 235
Query: 217 SQGVRGLGPESACQIVKSVG 236
+RG+G ++A ++++ G
Sbjct: 236 CDSIRGIGGQTALKLIRQHG 255
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 18/209 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKMSSLRR 112
L G+F+R L+ ++V DG +K T R+L + ++ +++ R
Sbjct: 58 LYGIFYRTINLLENRIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELEEAIERGEEDLR 117
Query: 113 NMGSEFSCM----IKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
S + + + + K L +G+P ++ E EAQ + + +++ DG S D D L
Sbjct: 118 QYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKKNV-DGVISQDYDCLL 176
Query: 169 FGARTVYRDIWL-GERG------YVVCYE----MDDIERKLGFGRNSLITLALLLGSDYS 217
FGAR + R+ + G R Y Y +D++ ++ LI + +L+G+D++
Sbjct: 177 FGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQLIGIGILVGTDFN 236
Query: 218 QGVRGLGPESACQIVKSVGD-NVVLQRIA 245
+G++G+G + A ++K GD VL+RI
Sbjct: 237 EGIKGIGAKKALALIKKEGDIKSVLKRIG 265
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 37/309 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K L+ I+ E ++ ++N ++V ID S I Q +N+S
Sbjct: 1 MGIKQLFSIIKEEAPDSIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSEGQQLMNESGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
+ L G+F+R ++ ++V DG+ P +K +R E T+
Sbjct: 61 TS---HLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKET 117
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + E + L +G+P + EAEAQCA+L
Sbjct: 118 GTAEDIEKFSRRTVRVTREHNA---ECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDY 216
S D D F A + R + E+ E ++ + L R + L +LLG DY
Sbjct: 175 AASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLNMERKQFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQ 276
+ +GP +A ++++ G L+++ E + + K + E W +K L
Sbjct: 235 LDPIPKVGPSTALKLIREHGS---LEKVV-EAIEKDPKKKYTIPEDWPYK---DARDLFF 287
Query: 277 EINVNGTDH 285
E +V DH
Sbjct: 288 EPDVRQADH 296
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 19/266 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R +I +V DG P +K +R E T K LD+ + +
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETT---KKLDEATDIAEK 121
Query: 114 MGSEFSCMIK-------EAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+ E ++K EAK L +G+P + EAEAQCA L S D D
Sbjct: 122 IKHERR-LVKVSKEHNDEAKKLLELMGIPYVNAPCEAEAQCAELAKVGKVYAAASEDMDT 180
Query: 167 FLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
+ + R + E E++ + + + I L ++LG DY + +RG+G
Sbjct: 181 LCYRTPYLVRHLTFSEAKKEPIQEINTEIVLQSMDLTLEQFIDLGIMLGCDYCESIRGVG 240
Query: 225 PESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTD 284
P +A +++K G L++I S + K E W +K +E L ++ +NG D
Sbjct: 241 PVTALKLIKEHGS---LEKIVEYIDSGDTKTKWKIPENWPYK-EARELFLKPDV-INGND 295
Query: 285 HSLQRETPFSQ-VIDAYSNPKCYSAD 309
+L+ P Q +ID K +S +
Sbjct: 296 ITLKWNPPKEQELIDYLCKDKGFSEE 321
>gi|195437805|ref|XP_002066830.1| GK24343 [Drosophila willistoni]
gi|194162915|gb|EDW77816.1| GK24343 [Drosophila willistoni]
Length = 701
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 17/246 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG+ L LE K L L ++ V +D CW+ + K R + L+++
Sbjct: 1 MGITGLIPFLEKASKKLQLKDIRGCSVAVDTYCWLHKGVFSCAEKLARGEDTDLYVQYCL 60
Query: 59 HRLRALIALNCGLIFVSDGS-IPAIKLSTYRRRLNS------GSEVTQDDKNLDKMSSLR 111
++ L++ + + V DG +PA L+ RRR N +E+ + + + S +R
Sbjct: 61 KYVQMLLSYDIKPVLVFDGQHLPAKALTEKRRRENRQQSKKRAAELLRLGRVEEARSQMR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R + ++ +A V C+ EA+AQ A LN + + DSD+ LFGA
Sbjct: 121 RCVDVTHEMALRLIQACR-ERNVDCIVAPYEADAQMAWLNKAEIVQYIVTEDSDLTLFGA 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIE-----RKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
+ V + L G +V E D + R+ + + + +L G DY + G+G
Sbjct: 180 KKVIFKLDLTGNGLLV--EADKLHLAMSCREDRYHFDKFRRMCILSGCDYLDSLPGIGLA 237
Query: 227 SACQIV 232
AC+ +
Sbjct: 238 KACKFI 243
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 120/269 (44%), Gaps = 25/269 (9%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSC----WIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++E K + + ++V ID S +++ +++ + +T +
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L GLF+R ++ ++V DG+ P +K +R +E T
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + +E + L +G+P + EAEAQCA L S
Sbjct: 121 EDVEKFSRRTVRVTREHN---EECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + R + E + ++ +D + L R I L +LLG DY
Sbjct: 178 EDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGD-NVVLQRIASE 247
++G+GP +A ++++ D V++ I S+
Sbjct: 238 IKGIGPSTALKLIREHNDLEGVVEHIKSQ 266
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 120/269 (44%), Gaps = 25/269 (9%)
Query: 1 MGVKNLWDILES----CKKTLPLHHLQNKRVCIDLSC----WIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++E K + + ++V ID S +++ +++ + +T +
Sbjct: 1 MGIKHLYQLIEEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMSETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L GLF+R ++ ++V DG+ P +K +R +E T
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + E + L +G+P + EAEAQCA L S
Sbjct: 121 EDVEKFSRRTVRVTKEHNA---ECQQLLKLMGIPYIVAPTEAEAQCATLAKGGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L + I L +LLG DY
Sbjct: 178 EDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLEMDQKQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGD-NVVLQRIASE 247
++G+GP +A ++++ D V++ I S+
Sbjct: 238 IKGIGPSTALKLIREHKDLEGVVEHIKSQ 266
>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|82000308|sp|Q5UQW7.1|YL386_MIMIV RecName: Full=Putative endonuclease L386
gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|339061318|gb|AEJ34622.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
Length = 473
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
LRG+F+ + + + I+V DG P IK T +R LR++
Sbjct: 87 LRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKTIEKR------------------KLRKD 128
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL------NLESLCDGCFSSDSDIF 167
S IKE + L +G+P + EA+ C+ L N + G + DSD+
Sbjct: 129 RFKLTSEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDSNGKRYVKGVCTEDSDML 188
Query: 168 LFGARTVYRDIWLGERGY---VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
GA +++D+ LG ++ ++ D+ LG N I L +LLG DY ++G+G
Sbjct: 189 PLGAPYMFKDM-LGLNNLNKNIIIVKLKDVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIG 247
Query: 225 PESACQIV 232
P++A +++
Sbjct: 248 PKNAYKLI 255
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 120/256 (46%), Gaps = 30/256 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKR---VCIDLSCWIVQ--------LQNVNKSYRPQ 48
MG+ L ++L E K++ ++ R V ID S + Q + N+
Sbjct: 1 MGICKLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGET 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNL--- 104
T ++ G+F++ L+ +++ DG P +K +T RR+ Q +K+L
Sbjct: 61 TAHIY--GIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRK----EQAEKDLVEA 114
Query: 105 ----DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCF 160
+K+ +R + + ++ A+ L +G+P + EAE CA LN+ +G
Sbjct: 115 VTEEEKVKHAKRTVRAT-KYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVV 173
Query: 161 SSDSDIFLFGARTVYRDIW---LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS 217
S D D FG + + R+ + + ++ V+ ++ + ++ G ++ I + +LLG DY
Sbjct: 174 SEDMDSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYC 233
Query: 218 QGVRGLGPESACQIVK 233
Q ++G+GP+ +V+
Sbjct: 234 QKLKGMGPKKVYDLVQ 249
>gi|351737540|gb|AEQ60575.1| putative endonuclease of the XPG family [Acanthamoeba castellanii
mamavirus]
gi|398257219|gb|EJN40827.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
lentillevirus]
Length = 473
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
LRG+F+ + + + I+V DG P IK T +R LR++
Sbjct: 87 LRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKTIEKR------------------KLRKD 128
Query: 114 MGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL------NLESLCDGCFSSDSDIF 167
S IKE + L +G+P + EA+ C+ L N + G + DSD+
Sbjct: 129 RFKLTSEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDSNGKRYVKGVCTEDSDML 188
Query: 168 LFGARTVYRDIWLGERGY---VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
GA +++D+ LG ++ ++ D+ LG N I L +LLG DY ++G+G
Sbjct: 189 PLGAPYMFKDM-LGLNNLNKNIIIVKLKDVLGFLGLTMNEFIDLCVLLGCDYCDNIKGIG 247
Query: 225 PESACQIV 232
P++A +++
Sbjct: 248 PKNAYKLI 255
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 31/287 (10%)
Query: 1 MGVKNL----WDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL---- 52
MG+K L D+ K + ++V ID S + Q ++ Q +
Sbjct: 1 MGIKGLSQLIADVAPFAVKEGEIKTFFGRKVAIDASMCLYQFLIAVRAEGAQLTSVDGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDK---- 106
L G F+R L+ ++V DG P +K +R E K LDK
Sbjct: 61 TSHLMGTFYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEA---QKALDKATEA 117
Query: 107 -----MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
+ R + EAK L +GVP +E EAEAQCA L +
Sbjct: 118 GAVEDIEKFNRRLVKVTKQHANEAKELLRLMGVPYVEAPCEAEAQCAALVKAGKVYATAT 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D FG+ + R + E + V + + + + + I + +LLG DY
Sbjct: 178 EDMDALTFGSNILLRHLTFSEARKMPVQEFHYEKVLKGFELTADEFIDMCILLGCDYCDT 237
Query: 220 VRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+RG+GP+ A +++ R + L + ++K E W+++
Sbjct: 238 IRGIGPKKAIELINK-------HRSIEQILEHLDKSKYVVPEDWNYQ 277
>gi|380484575|emb|CCF39910.1| flap structure-specific endonuclease [Colletotrichum higginsianum]
Length = 698
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 37/191 (19%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+R LF+RL L++L IFV DG PA K +R G V
Sbjct: 10 IRTLFYRLVRLLSLGIHPIFVFDGPHKPAFK---RNKRSGRGDGVA-------------- 52
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ M K L G P + EAEA+CALL + + D S D D +FG
Sbjct: 53 ------TAMAKRVTRL---FGFPVHDAPGEAEAECALLQQKGIVDAVLSEDVDTIMFGCT 103
Query: 173 TVYRDIWL--GERG-----YVVCYEMDD-IERKLGFGRNSLITLALLLGSDY-SQGVRGL 223
R+ W G RG +V Y+++ + G R ++ +AL+ G DY +GV G
Sbjct: 104 RTLRN-WTAEGTRGSKTPTHVSLYDVNALLSTGTGLDREGMVLVALMSGGDYLPEGVPGC 162
Query: 224 GPESACQIVKS 234
G + AC+ K+
Sbjct: 163 GVKLACEAAKA 173
>gi|359417810|ref|ZP_09209878.1| flap endonuclease-1, partial [Candidatus Haloredivivus sp. G17]
gi|358031834|gb|EHK00670.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 296
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL--- 110
L GLF+R L+ + ++V DG+IP +K R E ++ + L + +
Sbjct: 15 LSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKETTERRKKREEAKKEWEKLKEEGKISEA 74
Query: 111 --RRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ S+ + MI+E+K L ++G+P ++ E EAQ A ++ E S D D
Sbjct: 75 YSKATQSSKLTGDMIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDVYAVGSQDWDCM 134
Query: 168 LFGARTVYRDIWL--------GERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYS 217
LFGA + R++ G+R V E++ + +L R L+ L +++G+D++
Sbjct: 135 LFGADRMVRNLTSRKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLVMLGMVMGTDFN 194
Query: 218 QGVRGLGPESACQIVK 233
G+ G+GP+ ++VK
Sbjct: 195 DGIHGIGPKKGLEMVK 210
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 40/293 (13%)
Query: 1 MGVKNLWDILE-----SCKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYR 46
MG+KNL+ I++ + K+ H ++V ID S I Q +N+S
Sbjct: 1 MGIKNLYQIIKEEAPNAIKEGEIKAHF-GRKVAIDASMSIYSFLIAVRSDGQQLMNESGE 59
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------ 100
+ L GLF+R ++ ++V DG+ P +K +R E ++
Sbjct: 60 TTS---HLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEANENLEEAKE 116
Query: 101 ---DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
++++K S + E + E + L +G+P + EAEAQCA+L
Sbjct: 117 TGTAEDVEKFSRRTVRVTREHNA---ECQRLLKLMGIPFIVAPTEAEAQCAVLARAGKVY 173
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSD 215
S D D F + R + E+ E +D + LG R + L +LLG D
Sbjct: 174 AAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLEGLGMEREQFVDLCILLGCD 233
Query: 216 YSQGVRGLGPESACQIVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y + +GP +A ++++ G D +V E + + K E W ++
Sbjct: 234 YLDPIPKVGPSTALKLIREHGTLDKLV------EAIKEDPKGKYQIPEDWPYQ 280
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 19/252 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQT--DKL-- 52
MG+K L +L K + + + ID S + Q + + T D+
Sbjct: 1 MGIKGLSKLLARYAPKSMKEGKIDQYSGRVIAIDASILVYQFISAVRDTTGATMVDEFGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY-RRRLNSGSEVTQDDKNLDKMS 108
+ G F+R LI ++V DG P +K +R+ N+ Q DK L++
Sbjct: 61 TTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLDKALEEGD 120
Query: 109 SLR-RNMGSEFSCMIKE----AKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + + M KE K L +G+PC+E EAE CA L C + D
Sbjct: 121 KEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCVEANCEAEGTCAALVKAGKCYATATED 180
Query: 164 SDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D G+ V R + + + Y + I + GF I L +LLG DY ++
Sbjct: 181 MDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGCDYCDTIK 240
Query: 222 GLGPESACQIVK 233
G+GP +A ++++
Sbjct: 241 GVGPITAFELIQ 252
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 20/252 (7%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG++ L D+ S + + ++V ID S I Q +V ++ +T
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKN 103
L G+F+R ++ ++V DG P +K +R +E QD
Sbjct: 61 TS-HLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKRLQQAQDVGT 119
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + + E K L +G+P L+ EAEA CA L + D
Sbjct: 120 EEDVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATED 179
Query: 164 SDIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG+ + R + E + + + I ++LG + + L +LLGSDY + +R
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIR 239
Query: 222 GLGPESACQIVK 233
G+GP+ A +++
Sbjct: 240 GIGPKRAVDLIQ 251
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 28/261 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQLQNV--NKSYRPQTDKL-- 52
MG+K L +L ++ K + ++ +R+ +D S I Q V T++
Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIK-------LSTYRRRLNSGSEVTQ--- 99
L+G+F+R L+ ++V DG P +K Y +R ++ E+T+
Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDATKELTEAVE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D ++K S + + + +E K L +GVP +E EAEA+CA L + +
Sbjct: 121 EGDKDAIEKFSKRTVKVTKQHN---EECKRLLRLMGVPVVEAPCEAEAECAALCINDMVY 177
Query: 158 GCFSSDSDIFLFGARTVYRDIW--LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
S D D FGA R + ++ V+ +E+ + +L + I L +L G D
Sbjct: 178 AVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y ++G+G ++A ++++ G
Sbjct: 238 YCDSIKGIGGQTALKLIRQHG 258
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 13/247 (5%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R ++ N ++V DG P +K +RL + + +N+ +++
Sbjct: 29 LSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKRLLRKEDAIKQMENIKDEATVEDM 88
Query: 114 MGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ E + +EAK L +G+P ++ EAEAQCA L + S D D
Sbjct: 89 VRYEKRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAALARKGKVFAAASEDMDTI 148
Query: 168 LFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
+ + R + + E + + E + L +++ I L +LLG DY + ++G+GP
Sbjct: 149 CYEPPFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGCDYCETIKGVGP 208
Query: 226 ESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDH 285
+A +++K G L +I + + K E W + +E L+ E+ N D
Sbjct: 209 VTAFKLIKEHGS---LDKIVEYLSANPDKTKYKVPENWPYN-EARELFLHPEVQ-NADDI 263
Query: 286 SLQRETP 292
+L+ + P
Sbjct: 264 NLKWKEP 270
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 21/243 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDDKNL 104
L GLF+R ++ ++V DG+ P +K +R+ E T +++
Sbjct: 82 LMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHEEAKETGTTEDV 141
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K S + E + +E K L +G+P + EAEAQCA+L S D
Sbjct: 142 EKFSRRTVRVTREHN---EECKKLLKLMGIPYINAPTEAEAQCAVLARAGKVYAAASEDM 198
Query: 165 DIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D F + + R + E + ++ +D + LG R + + L +LLG DY +
Sbjct: 199 DTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGCDYLDPIPK 258
Query: 223 LGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNG 282
+GP +A ++++ D+ L+++ E + + K + + W ++ + L E +V
Sbjct: 259 VGPNTALKLIR---DHGSLEKVV-EAMKNDPKQKYTIPDDWPYE---QARDLFFEPDVRP 311
Query: 283 TDH 285
DH
Sbjct: 312 ADH 314
>gi|393219213|gb|EJD04700.1| hypothetical protein FOMMEDRAFT_153772 [Fomitiporia mediterranea
MF3/22]
Length = 1041
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 105/276 (38%), Gaps = 69/276 (25%)
Query: 1 MGVKNLWDILESCKKTLPLHHL-------------QNKRVCIDLSCWIVQLQNVNKSYRP 47
MGV LWDIL K L L + RV ID S W + P
Sbjct: 64 MGVPGLWDILRPAGKQRSLTQLAVQDGFERNPGGRRGLRVGIDASIWFYHATYGREGENP 123
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSI-PAIKLSTYRRRLNSGSEVTQDDKNLDK 106
+ LR LF R L++ +FV DG P +K R++ SG +D +
Sbjct: 124 E-----LRTLFFRCARLMSRPFLPLFVFDGPRRPELK----RKKKISG----KDHWMVSG 170
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
M + G E+ C A G EAEA+ A LN + D + D D
Sbjct: 171 MQEIIEAFGFEWWC------APG------------EAEAELAYLNRIGVIDAIITDDVDT 212
Query: 167 FLFGARTVYRDIWL------------------GERGYVVCYEMDDI--ERKLGFGRNSLI 206
F+FGA + R+ GE Y Y DI ++G R LI
Sbjct: 213 FVFGATMIMRNPGKMLSGNTSHPIKNTAGKDDGEHTY--TYTSSDILEHAEVGITRGGLI 270
Query: 207 TLALLLGSDY-SQGVRGLGPESACQIVK-SVGDNVV 240
+ALL G DY +G+ G G A + + GD +V
Sbjct: 271 LIALLRGGDYDPEGIDGFGANIAHALARCGFGDTLV 306
>gi|310791662|gb|EFQ27189.1| hypothetical protein GLRG_02360 [Glomerella graminicola M1.001]
Length = 376
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 53/270 (19%)
Query: 1 MGVKNLWDILESCKKTLPL-----HHLQNK----RVCIDLSCWI---------VQLQNVN 42
MG+ + W+++ + L HL+ R+ ID + W ++Q +
Sbjct: 1 MGIYHFWNVVNEAGRERSLAQWAAKHLKEHGRPLRIAIDEAHWRFKNITDAKEAEIQEKS 60
Query: 43 KSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK 102
P+ + R L L+ L L+FV DG R + GS
Sbjct: 61 PGSHPRETAILERTL-----PLLRLGIQLLFVFDGE--------RRPEMKKGS------- 100
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+R E + + K + + VP + EAEA+CALL + L D +S
Sbjct: 101 --------KRYFQREATTAL--LKGMLDHIYVPWHQAPGEAEAECALLQQKGLVDAVWSE 150
Query: 163 DSDIFLFGARTVYRDIWLGE----RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-S 217
DSD F+FG + +D+ G+ + ++M DI + F + S+ +L G DY S
Sbjct: 151 DSDSFMFGCTLLIKDLRNGKNQKLKEETQSFDMKDIRKTGLFNKKSITLFGMLTGCDYDS 210
Query: 218 QGVRGLGPESACQIVKSVGDNVVLQRIASE 247
G+RG G A Q+ K G RI +E
Sbjct: 211 AGLRGCGEAMARQLAKKGGLVEGFWRIQTE 240
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKR---VCIDLSCWIVQ--------LQNVNKSYRPQ 48
MG+ L ++L E K++ ++ R V ID S + Q + N+
Sbjct: 1 MGICKLTELLKEKAPKSIRNTQIEKYRGWKVAIDASMILYQSLVAIRYGMDNLKNKNGET 60
Query: 49 TDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYR----RRLNSGSEVTQDDKNL 104
T ++ G+F++ L+ +++ DG P +K +T R+ + ++ +
Sbjct: 61 TAHIY--GIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLVEAVTEE 118
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K+ +R + + ++ A+ L +G+P + EAE CA LN+ +G S D
Sbjct: 119 EKVKHAKRTVRAT-KYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAVNGVVSEDM 177
Query: 165 DIFLFGARTVYRDIW---LGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG + + R+ + + ++ V+ ++ + ++ G ++ I + +LLG DY Q ++
Sbjct: 178 DSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLGCDYCQKLK 237
Query: 222 GLGPESACQIVK 233
G+GP+ +V+
Sbjct: 238 GMGPKKVYDLVQ 249
>gi|430813459|emb|CCJ29208.1| unnamed protein product [Pneumocystis jirovecii]
Length = 278
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 31/258 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL----------QNVNKSYR 46
MG+++L +LE S K+ + H ++V ID S I Q Q +NK+
Sbjct: 1 MGIRHLHQLLEEFASSSIKSYDIDHYFGRKVAIDASMSIYQFLVAVRQRDGQQLMNKTGE 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR-------LNSGSEVTQ 99
+ L G+F+R + +V DG+ P +K +R S E +
Sbjct: 61 TTSH---LMGIFYRTLRMCDNGIRPCYVFDGTPPKLKSGELAKRSERREKAAKSYLEAKE 117
Query: 100 DD--KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D ++++K S M E + +E K L +G+P ++ EAEAQCA L
Sbjct: 118 ADSIEDMNKFSRRTVRMTREHN---EECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSD 215
S D DI F + R + E+ + ++ ++L + L +LLG D
Sbjct: 175 AAASEDMDILCFSTPILLRHLTFSEQKKEPITEVNLEKALKELNMPLEQFVDLCILLGCD 234
Query: 216 YSQGVRGLGPESACQIVK 233
Y + ++G+GP+ A ++++
Sbjct: 235 YCEPIKGIGPKRALELIR 252
>gi|225681808|gb|EEH20092.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 566
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 114/454 (25%), Positives = 172/454 (37%), Gaps = 91/454 (20%)
Query: 1 MGVKNLWDILESCKKT----LPLHHLQNK----RVCIDLSCWIVQLQNVNKSYRPQTDKL 52
MG+ L + + ++ + HLQ RV ID+S W+ Q Q P+
Sbjct: 1 MGIPGLIQFIGNGERISLAKFAVSHLQRTSRPIRVAIDISIWLFQAQAGKGGTNPE---- 56
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
LR LF+RL L +FV DG + Y+R G V+ R
Sbjct: 57 -LRTLFYRLVRLKGFPVHPLFVYDGP----QRPQYKR----GKLVS-------------R 94
Query: 113 NMGS-EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
N G+ + + +I+ +K L P EAEA+CA L D S D D +FG+
Sbjct: 95 NYGAGDLARIIRRSKDLIELFRFPYHIAPGEAEAECARLQTFGAVDAVMSDDVDTIMFGS 154
Query: 172 RTVYRDI------WLGERGYVVCYE----MDDIERKLGFGRNSLITLALLLGSDY-SQGV 220
R + +V Y +D + R +I ALL G DY GV
Sbjct: 155 RVTIMNYSKEDSSGTNAATHVTLYRTKESVDGQIANVPLDRGGMILFALLSGGDYLPAGV 214
Query: 221 RGLGPESACQIVKSVGDNVVLQRI-ASEGLSFVKRAK---------NSKKEGWSFKCNNK 270
GP+ A +I + N +LQ + SE VK + + EG+ FKC +K
Sbjct: 215 PKCGPKLAGEIALAGFGNELLQSVEGSESELAVKLRQWRERLQSQLHENTEGY-FKCKHK 273
Query: 271 EESLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADS--EAVHRVLAQHLFQHARLH 328
+ P +++ Y++P S + EA + L
Sbjct: 274 AVQIPDSF-------------PDLKILRDYTHPVVSSPEKLREAQLSFIWDQAIDLEGLR 320
Query: 329 QVCAQFFQWPPEKTDEYILPKIAERDLRRFANLRANTLALGVDLPL----QKVPVKCPIT 384
+ F W + L K+ A L N L LG LPL + +P++ P T
Sbjct: 321 DFVEKDFGW--RRGSARRLTKVLA------APLLCNKLRLG--LPLLANAELLPIREPPT 370
Query: 385 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
G +L G+ C S + L+ VPAD++
Sbjct: 371 GA----RLCGQRC-HYSTDGLSELRVEYVPADIV 399
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 40/293 (13%)
Query: 1 MGVKNLWDIL-----ESCKKTLPLHHLQNKRVCIDLSCWIVQL---------QNVNKSYR 46
MG+K L+ I+ E+ K+ +H ++V ID S I Q +N S
Sbjct: 1 MGIKQLFQIIKEEAPEAIKEGEIKNHF-GRKVAIDASMSIYSFLIAVRSDGQQLMNDSGE 59
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------ 100
+ L G+F+R ++ ++V DG+ P +K +R E T+
Sbjct: 60 TTS---HLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKE 116
Query: 101 ---DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
++++K S + E + E + L +G+P + EAEAQCA+L
Sbjct: 117 TGTAEDVEKFSRRTVRVTREHNA---ECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKVY 173
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSD 215
S D D F + R + E+ E +D + L R+ + L +LLG D
Sbjct: 174 AAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERSQFVDLCILLGCD 233
Query: 216 YSQGVRGLGPESACQIVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y V +GP +A ++++ G +NVV + + + K + E W +K
Sbjct: 234 YLDPVPKVGPTTALKLIREHGTLENVV------DAIEKDSKKKYTLPEDWPYK 280
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+F+R L+ ++V DG P +K +R+ E + +++ +++
Sbjct: 29 LSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQEDIKDTATVEEM 88
Query: 114 MGSEFSCMI------KEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ E + EAK L +G+P ++ EAEAQCA L + S D D
Sbjct: 89 VRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKVFAAASEDMDTL 148
Query: 168 LFGARTVYRDIWLGERGYVVCYEMDDIERK-----LGFGRNSLITLALLLGSDYSQGVRG 222
+ + R + E + +D I+ K L + + I L +LLG DY + ++G
Sbjct: 149 CYSPPYLLRHLTFAEARKM---PIDQIDYKKAMEGLEMDKQTFIDLCILLGCDYCETIKG 205
Query: 223 LGPESACQIVKSVG--DNVV 240
+GP +A +++K G DN+V
Sbjct: 206 VGPVTAFKLIKEHGSLDNIV 225
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 122/290 (42%), Gaps = 34/290 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSCWIVQL---------QNVNKSYRP 47
MG+K L+ I+ E + ++N ++V ID S I Q +N S
Sbjct: 1 MGIKQLFQIIKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNDSGET 60
Query: 48 QTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------- 100
+ L G+F+R ++ ++V DG+ P +K +R E T+
Sbjct: 61 TS---HLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLEEAKET 117
Query: 101 --DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDG 158
++++K S + E + E + L +G+P + EAEAQCA+L
Sbjct: 118 GTAEDIEKFSRRTVRVTREHNA---ECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKVYA 174
Query: 159 CFSSDSDIFLFGARTVYRDIWLGERGYVVCYE--MDDIERKLGFGRNSLITLALLLGSDY 216
S D D F + + R + E+ E ++ + LG R + L +LLG DY
Sbjct: 175 AASEDMDTLCFNSPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFVDLCILLGCDY 234
Query: 217 SQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
+ +GP +A ++++ D+ L++I E + + K E W +K
Sbjct: 235 LDPIPKVGPTTALKLIR---DHGSLEKIV-EAMEKDPKKKYVLPEDWPYK 280
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 18/251 (7%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDK----- 51
MG+K L ++ S K + ++V ID S + Q + Q
Sbjct: 1 MGIKGLSQVIADHAPSAIKVQEIKAFFGRKVAIDASMCLYQFLIAIRQDGSQMQSEDGET 60
Query: 52 -LFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKNL 104
L G+F+R +I ++V DG P +K +R +E ++ +
Sbjct: 61 TSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAEKALTEAKEKGDA 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+ R + +E K L +G+P +E EAEAQCA L G + D
Sbjct: 121 KEAEKFERRLVKVTKQQNEEVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKVYGTATEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + + + + ++ ++ I L +LLG DY +RG
Sbjct: 181 DALTFGSCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKDQFIDLCILLGCDYCGTIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKKAVELIK 251
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 11/220 (5%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLS--TYR--RRLNSGSEVTQDDKNLDKMSS 109
L G+F+R +I +V DG P +K T R RR + ++ + L+KM
Sbjct: 65 LMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLAEATTELEKMKQ 124
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
RR + + K LGL +GVP + EAEAQCA L + S D D +
Sbjct: 125 ERRLVKVSKEHNEEAQKLLGL-MGVPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLCY 183
Query: 170 GARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
+ R + E +E+D + R L + L ++LG DY + +RG+GP +
Sbjct: 184 RTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPVT 243
Query: 228 ACQIVKSVGD-NVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
A +++++ G +++ I SE S K E W +K
Sbjct: 244 ALKLMRTHGSIEKIIEFIESEESS---NTKWKIPEDWPYK 280
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 25/269 (9%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQN---KRVCIDLSC----WIVQLQNVNKSYRPQTDKL 52
MG+K+L+ ++ E + + ++N ++V ID S +++ +++ + +T +
Sbjct: 1 MGIKHLYQLIDEHTPEAVKKGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNETGET 60
Query: 53 --FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV---------TQDD 101
L GLF+R ++ ++V DG+ P +K +R +E T
Sbjct: 61 TSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAEEAKETGTA 120
Query: 102 KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFS 161
++++K S + E + E + L +G+P + EAEAQCA L S
Sbjct: 121 EDVEKFSRRTVRVTKEHNA---ECQRLLKLMGIPYIIAPTEAEAQCAALAKGGKVYAAAS 177
Query: 162 SDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
D D F + + R + E + ++ +D + L + I L +LLG DY
Sbjct: 178 EDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDQKQFIDLCILLGCDYLDP 237
Query: 220 VRGLGPESACQIVKSVGD-NVVLQRIASE 247
++G+GP +A ++++ D V++ I S+
Sbjct: 238 IKGIGPSTALKLIREHKDLEGVVEHIKSQ 266
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 29/277 (10%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MG+KNL+ I+ E+ + ++N+ + L N + L G+F+
Sbjct: 1 MGIKNLYQIISENAPDAVKSGEIKNQ-----FGRKVAILTNESGETTSH-----LMGMFY 50
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRL---------NSGSEVTQDDKNLDKMSSL 110
R ++ ++V DG+ P +K +R ++ T ++++K S
Sbjct: 51 RTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAEEAKETGTTEDVEKFSRR 110
Query: 111 RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFG 170
+ E + K + LGL +G+P L+ EAEAQCA+L G S D D F
Sbjct: 111 TVRVTREHNAECK--RLLGL-MGIPYLDAPTEAEAQCAVLAKAGKVFGAASEDMDTLCFA 167
Query: 171 ARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 228
A + R + E + ++ +D + LG + L +LLG DY + +GP +A
Sbjct: 168 APVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGCDYLDPIPKVGPNTA 227
Query: 229 CQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSF 265
++++ D+ L+++ E + + K E W +
Sbjct: 228 LKMIR---DHGTLEKVV-EAIESDPKKKYVIPEDWPY 260
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 31/261 (11%)
Query: 1 MGVKNLWDILESCKKTLPLHH----LQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-- 52
MG+K L +L T + + + + +D S I Q V K T++
Sbjct: 1 MGIKGLTKLLAQHAPTAAVQRRVEDYRGRVIAVDASVSIYQFLAVVGRKGSELLTNEAGE 60
Query: 53 ---FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQ 99
L+G+ +R ++ +FV DG P +K +R LN E+
Sbjct: 61 ITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDLNRAMEIG- 119
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
D+ ++K S + + + K L +GVP +E EAEAQCA L
Sbjct: 120 DENAIEKFSKRTVKVTGRHN---DDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQVYAV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGY----VVCYEMDDIERKLGFGRNSLITLALLLGSD 215
S D D FGAR R L + GY V +++ + +LG + I L +L G D
Sbjct: 177 ASEDMDTLTFGARRFLR--HLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y + +RG+G + A ++++ G
Sbjct: 235 YCENIRGIGGQRALKLIRQHG 255
>gi|448534324|ref|ZP_21621652.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
gi|445704806|gb|ELZ56713.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
Length = 325
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 132 LGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEM 191
L VP +E E EAQCA + D S D D LFGA T R L +G ++
Sbjct: 144 LDVPIVEAPAEGEAQCAHMAATGTVDHAGSEDYDTLLFGAPTTLRQ--LTSKGDPELMDL 201
Query: 192 DDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
L R L+ A+L G+D+++GVRG+GP++A V+ GD
Sbjct: 202 AATLSDLDLDRQGLVDAAMLCGTDFNEGVRGIGPKTAVTAVREHGD 247
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 108/252 (42%), Gaps = 20/252 (7%)
Query: 1 MGVKNLW----DILESCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG++ L D+ S + + ++V ID S I Q +V ++ +T
Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV------TQDDKN 103
L G+F+R ++ +++ DG P +K + +R +E Q+
Sbjct: 61 TS-HLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSAQLAKRSERRAEAEKQLQQAQEAGA 119
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+++ + + E K L +G+P L+ EAEA CA L + D
Sbjct: 120 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATED 179
Query: 164 SDIFLFGARTVYRDIWLGERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVR 221
D FG+ + R + E + + + + ++LG + + L +LLGSDY + VR
Sbjct: 180 MDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESVR 239
Query: 222 GLGPESACQIVK 233
G+GP+ A +++
Sbjct: 240 GIGPKRAVDLIQ 251
>gi|345005776|ref|YP_004808629.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
gi|344321402|gb|AEN06256.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
Length = 326
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 20/237 (8%)
Query: 17 LPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----------LRGLFHRLRALIA 66
+P L V +D W+ + + + + D ++ L G+ L
Sbjct: 15 IPFSELSGSVVAVDAHNWLYRY--LTTTVKFTADSVYTTSDGDEVANLLGVVQGLPKFFE 72
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNS---GSEVTQD-DKNLDKMSSLRRNMGSE-FSCM 121
+ + V DG + +K RR E Q+ ++ D + + R ++ +
Sbjct: 73 ADMTPVLVFDGGVTDLKSDEVERRREQRKKAEERKQEAEEAGDSVEAARLEARTQRLTDT 132
Query: 122 IKEA-KALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
I E + L L VP +E E EAQCA + D S D D FGA R L
Sbjct: 133 IHETTRGLLDRLDVPYIEAPAEGEAQCAHMAATGEVDYAGSEDYDTMTFGAPRTLRQ--L 190
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGD 237
+G+ ++ K L+ +ALL+G+D+++GV G GP++A + VK GD
Sbjct: 191 TSKGHPELMDLQKTLEKHDISYEQLVDVALLMGTDFNEGVTGYGPKTAVKAVKEHGD 247
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 11/188 (5%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE------VTQDDKNLDKM 107
L GLF+R LI ++V DG P +K +R ++ VT D ++K
Sbjct: 65 LTGLFYRTIRLIEAGIKPVYVFDGKPPQLKQKELDKRNERQAQALSELKVTDDSYEIEKQ 124
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
E S +E K L +G+P ++ EAEA CA + D D
Sbjct: 125 EKRSVRATREQS---EEVKKLLTFMGIPVVQAPCEAEATCAAYVKAGKAYATATEDMDSL 181
Query: 168 LFGARTVYRDIWLGERGY--VVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGP 225
FG+ V R I ++ V Y + +I +G + I + +L G DY++ ++G+GP
Sbjct: 182 TFGSTHVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKTIKGIGP 241
Query: 226 ESACQIVK 233
A Q+++
Sbjct: 242 TRAYQLIQ 249
>gi|440491647|gb|ELQ74269.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 441
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 23/250 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWI------VQLQNVNKSYRPQTDKLFL 54
MG+K L I+ C K + +N R+ ID W+ + LQ N ++FL
Sbjct: 1 MGIKGLLPIVSPCLKKRHISSFKNHRIGIDGHSWLHSILPSIALQLYNNVQTTLHHEIFL 60
Query: 55 RGLFHRLRALIALNCGLIFVSDG-SIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
+ R+R + + V DG S+P+ + RRR+ T + + K ++R
Sbjct: 61 K----RVRVIQKYGAVPVVVFDGESLPSKHVVNERRRMKREEARTMAELQMSK-GNVREA 115
Query: 114 MGSEFSC-------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
M +C M+ + GV + E++AQ A L + + DSD+
Sbjct: 116 M-RYIACSISISPHMVAQIAQFLRDNGVEVIVSPYESDAQLAYLQRINYVHSIITEDSDL 174
Query: 167 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPE 226
++ V ++ GYV+ YE F ++L+ +++L G DY + VRG+G
Sbjct: 175 IVYKCNNV---LYKYGNGYVMHYERGAFRTANEFVCDNLLDVSILSGCDYLENVRGVGIS 231
Query: 227 SACQIVKSVG 236
SA ++++ G
Sbjct: 232 SAVKMMRRYG 241
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 22/249 (8%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQ-----TDKLF 53
MG+ NL +++ + PL + K++ D S Q +S Q +
Sbjct: 1 MGIHNLTKVIKKYYRPAEHPLSFYRTKKMAFDASLLTYQYLVAIRSDGAQLAHNSSSTSH 60
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---------SGSEVTQDDKNL 104
+ G F+++ L + +FV DG P +K RR S +E D +
Sbjct: 61 ISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKDAAEKYSEAEEQMDKVKM 120
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K + +G E + + K+L ++GV EAEA CA L + + D + D
Sbjct: 121 EKYDKRKLKIGKEHT---DDIKSLLDAMGVAYTISENEAEAFCAALCRKGIVDYVCTEDM 177
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D F A + ++ + V Y +D+I R + + + L +LLG DY+ ++G+G
Sbjct: 178 DALCFRAPVLLKNFV---KDSVAEYRLDEILRDMKLEFDEFVDLCILLGCDYAGTIKGIG 234
Query: 225 PESACQIVK 233
P A +++
Sbjct: 235 PMKAETLIR 243
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-----YRPQTDKL--F 53
MGV N+ +I+E ++T L L K V +D + Q ++ + R + ++
Sbjct: 1 MGV-NIREIVE-LRET-SLGALAGKIVAVDAYNTLYQFLSIIRQPDGTPLRDSSGRITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYR---RRLNSGSEVTQDDKNLDKMSSL 110
L GL +R L+ L+FV DG +K + R + + ++ K L +
Sbjct: 58 LSGLIYRTTNLMEAGLKLVFVFDGKPSELKADVIKARSERREAAMQKWEEAKVLFPEDAF 117
Query: 111 RRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+ S + ++ +AK L +G+P ++ E EAQ A + + S D D L
Sbjct: 118 KYAQASARIDATIVADAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDAELVSSQDYDSLL 177
Query: 169 FGARTVYRDIWLG-ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPES 227
FGA R++ ++ + E+ +E G R LI +A+L+G+D+++G++G+G +
Sbjct: 178 FGAPITIRNLSAPRKKAKLELVELKALEDTQGIIREELIDIAILVGTDFNEGIKGVGVKR 237
Query: 228 ACQIVK 233
A +++K
Sbjct: 238 ALKLIK 243
>gi|242211748|ref|XP_002471711.1| predicted protein [Postia placenta Mad-698-R]
gi|220729267|gb|EED83145.1| predicted protein [Postia placenta Mad-698-R]
Length = 642
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 124 EAKALGLSLGVPCLE--GVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLG 181
E+K + ++G+PCL+ G EAEA + L L D S D+D+ ++ A + R+I
Sbjct: 441 ESKEILSAMGIPCLDSTGPFEAEALASALVLNGYADYVASEDTDVLVYDAPLI-RNIT-N 498
Query: 182 ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVG 236
+G +V D+ L R+S + AL+LG+D+SQ ++ +GP A + ++ G
Sbjct: 499 RKGPLVVISGTDVREHLRLDRSSFVDFALMLGTDFSQRIKNVGPARALKFIREYG 553
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,473,267,019
Number of Sequences: 23463169
Number of extensions: 342475739
Number of successful extensions: 886253
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 1174
Number of HSP's that attempted gapping in prelim test: 881037
Number of HSP's gapped (non-prelim): 2953
length of query: 583
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 435
effective length of database: 8,886,646,355
effective search space: 3865691164425
effective search space used: 3865691164425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)