BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007971
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 122/256 (47%), Gaps = 29/256 (11%)
Query: 8 DILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LRGLF 58
D+++ K+ L L+ KRV ID + Q + +P L L GLF
Sbjct: 2 DLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLSGLF 59
Query: 59 HRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSLRRNMG 115
+R ++ I+V DG P K RR + E + K+ K+ LR+
Sbjct: 60 YRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQ 119
Query: 116 SEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+ + M++E+K L ++G+P ++ E EA+ A LN L S D D LFGA+
Sbjct: 120 AILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAK 179
Query: 173 TVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS-QGV 220
+ R++ + G+R YV E + + +KLG R LI + +L+G+DY+ G+
Sbjct: 180 RLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGI 239
Query: 221 RGLGPESACQIVKSVG 236
RG+GPE A +I+K G
Sbjct: 240 RGIGPERALKIIKKYG 255
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIDLENLYGKKIAIDALNAIYQFLSTIRQEDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E K NL++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+ A
Sbjct: 191 TGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IV+ D
Sbjct: 251 LEIVRYSRD 259
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
Length = 336
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 36/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MG ++ D+ E ++ + L + K++ +D + Q ++ + +P L
Sbjct: 1 MGA-DIGDLFE--REEVELEYFSGKKIAVDAFNTLYQFISIIR--QPDGTPLKDSQGRIT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ--------DDKN 103
L G+ +R+ ++ + +FV DG P K + R +E + DK+
Sbjct: 56 SHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKD 115
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
K + + G ++ AK L +G+P ++ E EAQ A + + + S D
Sbjct: 116 AKKYA---QAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQD 172
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLL 212
D LFG+ + R++ + G+ YV V E+ +E ++LG R LI +A+L+
Sbjct: 173 YDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILV 232
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++GV+G+G + A +K+ GD
Sbjct: 233 GTDYNEGVKGVGVKKALNYIKTYGD 257
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
Length = 363
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 32/265 (12%)
Query: 1 MGVKNLWDILESCKKTL--PLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF----- 53
MGV +L DI+ KT+ L L K + ID + Q + +P L
Sbjct: 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIR--QPDGTPLMDNNGR 67
Query: 54 ----LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L GLF+R ++ ++V DG P +K RR E + + +
Sbjct: 68 ITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGD 127
Query: 110 L---RRN--MGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
L RR M ++ + M+++AK+L ++G+P ++ E EAQ A + + S D
Sbjct: 128 LELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQD 187
Query: 164 SDIFLFGARTVYRDIWLGER-------GYVVC----YEMDDIERKLGFGRNSLITLALLL 212
D LFG+ + R++ + R YV E+D + +LG +LI + +LL
Sbjct: 188 YDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILL 247
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ G G+GP+ A Q+VK+ G
Sbjct: 248 GTDYNPDGFEGIGPKKALQLVKAYG 272
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + K P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
++V DG P K +R L G E+ + K + + +
Sbjct: 71 AGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKG-EIEEARKYAQRATRVN- 128
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+I++AK L +G+P ++ E EAQ A + + S D D LFGA
Sbjct: 129 ------EMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAP 182
Query: 173 TVYRDIWL-GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GV 220
+ R++ + G+R G V E ++++ ++L R LI LA+L+G+DY+ G+
Sbjct: 183 RLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDYNPGGI 242
Query: 221 RGLGPESACQIVKSVGD 237
+G+G + A +IV+ D
Sbjct: 243 KGIGLKKALEIVRHSKD 259
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 36/235 (15%)
Query: 24 NKRVCIDLSCWIVQL-------QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
++V ID S I Q +V ++ +T L G+F+R ++ ++V D
Sbjct: 27 GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-HLMGMFYRTIRMMENGIKPVYVFD 85
Query: 77 GSIPAIKLSTYRRRLNSGSE----------------VTQDDKNLDKMSSLRRNMGSEFSC 120
G P +K +R +E V + K L K++ +
Sbjct: 86 GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHND------- 138
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
E K L +G+P L+ EAEA CA L + D D FG+ + R +
Sbjct: 139 ---ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTA 195
Query: 181 GERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
E + + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 196 SEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 250
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 36/235 (15%)
Query: 24 NKRVCIDLSCWIVQL-------QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
++V ID S I Q +V ++ +T L G+F+R ++ ++V D
Sbjct: 27 GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-HLMGMFYRTIRMMENGIKPVYVFD 85
Query: 77 GSIPAIKLSTYRRRLNSGSE----------------VTQDDKNLDKMSSLRRNMGSEFSC 120
G P +K +R +E V + K L K++ +
Sbjct: 86 GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHND------- 138
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
E K L +G+P L+ EAEA CA L + D D FG+ + R +
Sbjct: 139 ---ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTA 195
Query: 181 GERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
E + + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 196 SEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 250
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 8/186 (4%)
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLST--YRRRLNSGSEVTQDD----KNLDKMSS 109
G+F++ L+ + I+V DG P +K T RR + +E+ + ++ ++ +
Sbjct: 60 GVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAK 119
Query: 110 LRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M++ K L +G+P +E E EAQ + + + S D D L+
Sbjct: 120 YAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLY 179
Query: 170 GARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
GA V R++ + E++++ L + LI +A+ +G+DY+ GV+G+G + A
Sbjct: 180 GAPRVVRNL-TTTKEMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRA 238
Query: 229 CQIVKS 234
++V+S
Sbjct: 239 YELVRS 244
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 36/235 (15%)
Query: 24 NKRVCIDLSCWIVQL-------QNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76
++V ID S I Q +V ++ +T L G+F+R ++ ++V D
Sbjct: 27 GRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTS-HLMGMFYRTIRMMENGIKPVYVFD 85
Query: 77 GSIPAIKLSTYRRRLNSGSE----------------VTQDDKNLDKMSSLRRNMGSEFSC 120
G P +K +R +E V + K L K++ +
Sbjct: 86 GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHND------- 138
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
E K L +G+P L+ EAEA CA L + D FG+ + R +
Sbjct: 139 ---ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMACLTFGSPVLMRHLTA 195
Query: 181 GERGYVVC--YEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVK 233
E + + + I ++LG + + L +LLGSDY + +RG+GP+ A +++
Sbjct: 196 SEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQ 250
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna (Complex Ii)
pdb|3QEB|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna And Mn2+ (Complex Iii)
Length = 352
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 109/259 (42%), Gaps = 12/259 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + + K + + ++
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIKLSTY------RRRLNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ K + L G ++ ++ K +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + K KA S GV CL EA+AQ A LN + + DSD+ FG
Sbjct: 121 RSINITHAMAHKVIKA-ARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G + + R+LG F + +L G DY +RG+G AC
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
++++ + +++ I G
Sbjct: 240 KVLRLANNPDIVKVIKKIG 258
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 108/259 (41%), Gaps = 12/259 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ--LQNVNKSYRPQTDKLFLRGLF 58
MG++ L ++ + + + + + V +D CW+ + + K + + ++
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60
Query: 59 HRLRALIALNCGLIFVSDG-SIPAIKLSTY------RRRLNSGSEVTQDDKNLDKMSSLR 111
+ L++ I V DG ++P+ K + L G ++ ++ K +
Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
R++ + K KA S GV CL EA+AQ A LN + + DS + FG
Sbjct: 121 RSINITHAMAHKVIKA-ARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGC 179
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESAC 229
+ V + G + + R+LG F + +L G DY +RG+G AC
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKAC 239
Query: 230 QIVKSVGDNVVLQRIASEG 248
++++ + +++ I G
Sbjct: 240 KVLRLANNPDIVKVIKKIG 258
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPE 340
+ PFS+V+ NP+ + S +V L Q+A+L Q + PPE
Sbjct: 488 DVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTRGPPE 538
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 290 ETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPE 340
+ PFS+V+ NP+ + S +V L Q+A+L Q + PPE
Sbjct: 488 DVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTRGPPE 538
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 224 GPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEIN 279
GP + C VK ++ L++I S G S V + N KK+ ++ K N EE+ NQ ++
Sbjct: 1 GPANECISVKGRIYSI-LKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLD 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,331,553
Number of Sequences: 62578
Number of extensions: 592142
Number of successful extensions: 1389
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 14
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)