BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007971
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2Z3|GENL2_ARATH Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2
SV=2
Length = 600
Score = 613 bits (1582), Expect = e-175, Method: Compositional matrix adjust.
Identities = 329/611 (53%), Positives = 427/611 (69%), Gaps = 42/611 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LWD+LE CKKT PL HLQNKRVC+DLSCW+V+L VNKSY +K++LRG FHR
Sbjct: 1 MGVKYLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLRGFFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
LRALIALNC +I VSDG+IP IK+ TY+RRL + E+ D K +SL+RNMGSEFSC
Sbjct: 61 LRALIALNCSIILVSDGAIPGIKVPTYKRRLKARFEIADDGVEPSKETSLKRNMGSEFSC 120
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+IKEAK + +LG+ CL+G+EEAEAQCALLN ESLCD CFS DSDIFLFGA+TVYR+I L
Sbjct: 121 IIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICL 180
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
GE GYVVCYEMDDI++KLG GRNSLI LALLLGSDYSQGVRGL E AC++V+S+GDNV+
Sbjct: 181 GEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGDNVI 240
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L+++ASEGLSF ++ + SKK+ C+ K + +NG + +R QVIDA+
Sbjct: 241 LEKVASEGLSFAEKPRKSKKQVRPSVCSKK--GTLPLVVINGNNRDPERLEEIKQVIDAF 298
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRFAN 360
NPKC+ ADS V R LA+ FQ +L ++C QFF+WPPEKTDEYILPK+AER+LRRFAN
Sbjct: 299 MNPKCHQADSNTVSRALAEFSFQRTKLQEICHQFFEWPPEKTDEYILPKVAERNLRRFAN 358
Query: 361 LRANTLALGVDLPLQK--VPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
L++ + + V+LPL K +P KCP++ IIK+RK+QG+ECFEVSW + GL+SS+VPADL+
Sbjct: 359 LQSRSTEVEVNLPLHKPQMPEKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLV 418
Query: 419 ESACPEKIVEFEERRALRQPKK---------SKPKSSAAEIDQKLQALMLDIESENSTSS 469
E ACPEKI+EF+E+ A ++ K S P S++ ++ L+ LD+ NST
Sbjct: 419 ERACPEKIIEFKEKMAAKKKKPKPKQKQKETSSPTKSSSLVELSLELQHLDL---NST-- 473
Query: 470 NASFSSRVVMSEDWTAATEIDLTRRQDL-LLDAESKSNAN------------MSCYPTGS 516
S SR + E + + + L L+D+ + N N MS +P
Sbjct: 474 --SLVSRSTLEEAEQENEQQNSKKHDYLRLIDSPDRENCNNAWSNRDRLGVGMSSFP--- 528
Query: 517 TAAKAEIIDLVSPSP-VQCRNVSRI---REMSDQPINT-IELSDSETEKSPELERKARAL 571
+ E+IDL+SP P + R+VSR ++ D + T IELSDSET+ E +KAR L
Sbjct: 529 LYPETEVIDLISPCPEARSRSVSRSYQEQKSHDHQLETVIELSDSETDDE-EHCKKAREL 587
Query: 572 RMFIASIRDDI 582
R+F+ +IR DI
Sbjct: 588 RIFLQNIRKDI 598
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica
GN=SEND1 PE=2 SV=1
Length = 641
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/505 (55%), Positives = 371/505 (73%), Gaps = 23/505 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVKNLWDILESCKK LPLHHLQNK+VC+DLSCW+VQ+ + N+S DK++L+ LFHR
Sbjct: 1 MGVKNLWDILESCKKKLPLHHLQNKKVCVDLSCWLVQMYSANRSPAFAKDKVYLKNLFHR 60
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ--DDKNLDKMSSLRRNMGSEF 118
+RAL+ALNC L+FV+DG+IP++KL+TYRRRL S S + D N SLRRN GSEF
Sbjct: 61 IRALLALNCTLLFVTDGAIPSLKLATYRRRLGSISHAAKESDQPNSHPSISLRRNKGSEF 120
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
SCMIKEAK LG++LG+PCL+G+EEAEAQCA L+LESLCDGCF+SDSD FLFGARTVYRD+
Sbjct: 121 SCMIKEAKRLGMALGIPCLDGLEEAEAQCASLDLESLCDGCFTSDSDAFLFGARTVYRDV 180
Query: 179 WLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDN 238
++GE GYV+CYEM+DIE+ LGFGRNSLI+LA+LLGSDYS GV G GPE+AC++VKSVGDN
Sbjct: 181 FIGEGGYVICYEMEDIEKTLGFGRNSLISLAVLLGSDYSNGVNGFGPETACRLVKSVGDN 240
Query: 239 VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVID 298
++L +I S G+ ++ K K G NK + + + + + + F VI+
Sbjct: 241 LILDQILSNGVKATRKCKG-KNSG------NKVDDMCPKASSCEVGMTQDSDGQFRDVIN 293
Query: 299 AYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDLRRF 358
AY PKC+S DSEAV RV QH F +L ++C ++F W PEKTD+YILPKIAER+LRRF
Sbjct: 294 AYLEPKCHSPDSEAVQRVCGQHPFLRPQLQKICEEYFDWSPEKTDQYILPKIAERELRRF 353
Query: 359 ANLRANTLALGVDLPLQKVPVKCPITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLI 418
++LR+ + ALG+ L ++PV CP+ I+K RK+ G EC+EVSW GL+ SVVP DL+
Sbjct: 354 SDLRSASSALGIKPLLSEIPVPCPVLAIVKQRKVHGNECYEVSWRNIEGLQVSVVPGDLV 413
Query: 419 ESACPEKIVEF---------EERRALRQPKKSKPKSSAAEIDQKLQALMLDIESENSTSS 469
+SACPEKI EF ++RRA +PKKS +++ ++D++LQ L+L IE+++
Sbjct: 414 KSACPEKITEFLEKKGEEKKQKRRA--RPKKSG-QAAVKDVDEQLQELLLGIEADSGGIL 470
Query: 470 NASFSSRVVMSEDWTAATE--IDLT 492
A+ S ++ +T A E +DL+
Sbjct: 471 GATASVCQTLTAAYTVAVEDVVDLS 495
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2
Length = 908
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 220/493 (44%), Gaps = 75/493 (15%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ +PL +L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIPLRNLGGKTIAVDLSLWVCEAQTVKKMMG-SVMKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L ++ L+FV +G P +K +R Q S ++ S F
Sbjct: 60 ISYLTQMDVKLVFVMEGEPPKLKADVISKR-------NQSRYGSSGKSWSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY M I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++ +
Sbjct: 173 NTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILKGQ 232
Query: 239 VVLQRI---------ASEGLSFVKR------------AKNSKKEGWSF-KCNNKEESLNQ 276
+LQR +S L K+ K+ ++ G K + E +
Sbjct: 233 SLLQRFNRWNETSCNSSPQLLVTKKLAHCSVCSHPGSPKDHERNGCRLCKSDKYCEPHDY 292
Query: 277 EINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQV------ 330
E H + + S+V + C + H V+ + L +L +V
Sbjct: 293 EYCCPCEWHRTEHDRQLSEVENNIKKKAC-CCEGFPFHEVIQEFLLNKDKLVKVIRYQRP 351
Query: 331 --------CAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLPLQKVPVK 380
+ +WP E +L + D+ R+ + +N L P++
Sbjct: 352 DLLLFQRFTLEKMEWPNHYACEKLLVLLTHYDMIERKLGSRNSNQLQ----------PIR 401
Query: 381 CPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESACPEKIVEF 429
I+K+R G CFE+ WE E Y ++ ++ L E+A PE + +
Sbjct: 402 -----IVKTRIRNGVHCFEIEWEKPEHYAMEDKQHGEFALLTIEEESLFEAAYPEIVAVY 456
Query: 430 EERRALRQPKKSK 442
++++ + KK K
Sbjct: 457 QKQKLEIKGKKQK 469
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2
Length = 908
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 95/509 (18%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGV +LW ILE K+ + L L K + +DLS W+ + Q V K K LR LF R
Sbjct: 1 MGVNDLWQILEPVKQHIHLQDLSGKTIAVDLSLWVCEAQTVKKMIG-TVKKPHLRNLFFR 59
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSC 120
+ L +N L+FV +G P +K +R TQ S ++ S F
Sbjct: 60 ISYLTQMNVKLVFVMEGEPPMLKADVISKR-------TQTRYGPSGKSRSQKTGRSHFKS 112
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+++E + LG+P ++ EAEA CA LN DGC ++D D FL+GA+TVYR+ +
Sbjct: 113 VLRECLEMLECLGMPWVQAAGEAEAMCAYLNASGHVDGCLTNDGDAFLYGAQTVYRNFTM 172
Query: 181 GERG-YVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQIVKSVGDN 238
+ +V CY + I+ KLG R++L+ LA+LLG DY +GV G+G E A ++++
Sbjct: 173 NTKDPHVDCYTISSIKSKLGLDRDALVGLAVLLGCDYLPKGVPGVGKEQALKLLQIFKGQ 232
Query: 239 VVLQRIAS----------------------------------EGLSFVKRAKNSKKEGWS 264
+LQR G K K + +
Sbjct: 233 SLLQRFNQWIEDPCYSVPQSAPKKVVHCSVCSHPGSPKDHERNGCILCKSDKYCEPHDYD 292
Query: 265 FKCNNKEESLNQEINVNGTDHSLQRET------PFSQVIDAYSNPKCYSADSEAVHRVLA 318
+ C + + +++ +++++++ PF +VI + K +++L
Sbjct: 293 YLCPCEWHQTDHNRHLSEIENNIKKKACSCEGFPFHEVIQEFLLNK---------NKMLK 343
Query: 319 QHLFQHARL---HQVCAQFFQWPPEKTDEYILPKIAERDL--RRFANLRANTLALGVDLP 373
+Q L + Q +WP E +L + D+ R+ +N L
Sbjct: 344 PITYQRPDLLLFQRFTVQKMEWPSHYACEKLLVLLTRYDMIERKHGRKTSNQLQ------ 397
Query: 374 LQKVPVKCPITGIIKSRKLQGKECFEVSWE--ESYGLKS---------SVVPADLIESAC 422
P++ I+K R G C E+ WE E Y ++ ++ A L E+A
Sbjct: 398 ----PIR-----IVKPRVRNGVHCLEIEWEKPEHYVVEDGDPGKLSLLTMEEASLFEAAY 448
Query: 423 PEKIVEFE----ERRALRQPK-KSKPKSS 446
P+ + ++ E + +Q K+KPK S
Sbjct: 449 PDAVAVYQKQLSETKGRKQKSMKNKPKGS 477
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2
SV=3
Length = 599
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 130/258 (50%), Gaps = 21/258 (8%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLR-- 55
MGV N WD+L + L+NKRV +DLS WIVQ + K + +P F R
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL----DKMSSLR 111
LF + A +FV DG+ +K R S + D NL D +S R
Sbjct: 61 NLFSKFGAYP------VFVVDGTPSPLKSQARISRFFRSSGI--DTCNLPVIKDGVSVER 112
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
+ SE+ ++E L LG+P L+ EAEA CA LN + D C + DSD FLFGA
Sbjct: 113 NKLFSEW---VRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGA 169
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY-SQGVRGLGPESACQ 230
V +DI R CY M IE LG R LI ++LL+G+DY S GV G+G + A +
Sbjct: 170 MCVIKDIKPNSREPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALR 229
Query: 231 IVKSVGDNVVLQRIASEG 248
IV+ ++ VL+R+ G
Sbjct: 230 IVREFSEDQVLERLQDIG 247
>sp|Q64MA3|GENL1_ORYSJ Flap endonuclease GEN-like 1 OS=Oryza sativa subsp. japonica GN=RAD
PE=2 SV=1
Length = 629
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 130/258 (50%), Gaps = 13/258 (5%)
Query: 1 MGVK-NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFH 59
MGV + WD+L+ + +L+ +RV +DLS W+V ++ P LR LF
Sbjct: 1 MGVGGSFWDLLKPYARHEGAGYLRGRRVAVDLSFWVVSHSAAIRARSPHARLPHLRTLFF 60
Query: 60 RLRALIA-LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEV-------TQDDKNLDKMSSLR 111
R +L + + +FV DG +K R GS + T+ + + D + R
Sbjct: 61 RTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASADALVQPR 120
Query: 112 RNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGA 171
++F+ +++ L LG+P L E EA CA LN + D C +SDSD FLFGA
Sbjct: 121 ---NAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGA 177
Query: 172 RTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQ 230
+TV + + + CY M DIE LG R ++ +ALL+GSD+ GV G GPE+A +
Sbjct: 178 KTVIKVLRSNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALR 237
Query: 231 IVKSVGDNVVLQRIASEG 248
V+ ++ VL ++ G
Sbjct: 238 FVQLFDEDNVLAKLYEIG 255
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1
Length = 1479
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/309 (31%), Positives = 146/309 (47%), Gaps = 56/309 (18%)
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
D+ L RN S S M E + L G+P + EAEAQCA + +L DG + DS
Sbjct: 909 DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
D+FLFGAR+VY++I+ +R YV Y M DIE++LG R+ +I +A+LLGSDY++G+ G+G
Sbjct: 969 DVFLFGARSVYKNIF-DDRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIG 1027
Query: 225 PESACQIVKSVGDNVVLQRIAS---------EGLSFVKRAKNSKKEGWSFKCNNK----- 270
+A ++V + + LQ+ G + K KK G S +NK
Sbjct: 1028 IVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRG-SASVDNKGIISG 1086
Query: 271 ------EE----SLNQEINVNGTDHSLQRETPFSQVIDAYSNPKCYSADSEAVHRVLAQH 320
EE ++Q V+ H + P VI AY NP+ L+
Sbjct: 1087 ASTDDTEEIKQIFMDQHRKVSKNWH-IPLTFPSEAVISAYLNPQVD----------LSTE 1135
Query: 321 LFQHAR-----LHQVCAQFFQWPPEKTDEYILPKIAERDLR--------------RFANL 361
F + L ++C + F W +KTDE +LP + E + R RFA +
Sbjct: 1136 KFSWGKPDLSVLRKLCWEKFNWNGKKTDELLLPVLKEYEKRETQLRIEAFYSFNERFAKI 1195
Query: 362 RANTLALGV 370
R+ + V
Sbjct: 1196 RSKRINKAV 1204
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL----FLRG 56
MGV+ LW++L + + + L NKR+ ID S W+VQ K+ R + + L G
Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFI---KAMRDEKGDMVQNAHLIG 57
Query: 57 LFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRR 90
F R+ L+ L IFV DG+ PA+K T RRR
Sbjct: 58 FFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRR 93
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD2 PE=1 SV=2
Length = 1031
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
MIKE + L G+P + EAEAQCA L +L DG + DSD+FLFG +Y++++
Sbjct: 771 MIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF- 829
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
E+ YV Y+ + I + LG R ++I LA LLGSDY+ G++G+GP S+ +++ G+
Sbjct: 830 HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKN 889
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
+ + G F KR + ++ + F+ + +++ +N EI L + P V DAY
Sbjct: 890 FKDWYNNG-QFDKRKQETENK---FEKDLRKKLVNNEI-------ILDDDFPSVMVYDAY 938
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKI 350
P+ + V V + + Q+ WP EK+DE ++P I
Sbjct: 939 MRPEVDHDTTPFVWGVPDLDMLRSFMKTQLG-----WPHEKSDEILIPLI 983
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV + WDI + + L L++KR+ +D S WI Q L+ V + G F
Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG +P +K T R+R
Sbjct: 61 RICKLLYFGIRPVFVFDGGVPVLKRETIRQR 91
>sp|Q9VRJ0|GEN_DROME Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1
Length = 726
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 14/227 (6%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFV--HPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMG----S 116
LI +FV +G P +K +R N KN + + + + G S
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKSQVIAKR-NELQFRGVKPKNSPECTQSQPSKGDKGRS 117
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYR 176
F+ ++K+ + L LS+G+ C++G EAEA CA LN L DG S DSD F +GA VYR
Sbjct: 118 RFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYR 177
Query: 177 DIWLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ + G V Y+M +I ++ FG+ +I +ALL G DY
Sbjct: 178 NFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDY 224
>sp|P61942|FEN_NANEQ Flap endonuclease 1 OS=Nanoarchaeum equitans (strain Kin4-M) GN=fen
PE=3 SV=1
Length = 339
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 133/262 (50%), Gaps = 24/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKL-----FL 54
MGV NL +I++ KK + L K + ID + Q L ++ + P D L
Sbjct: 1 MGV-NLKEIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKGRITSHL 59
Query: 55 RGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR------LNSGSEVTQDDKNLDKMS 108
GLF+R L+ I+V DG+ P K+ + +R L S + N+ +
Sbjct: 60 SGLFYRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAI 119
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
+++G S M++EAK L ++G+P ++ E EA+ A L + + D C S D D L
Sbjct: 120 KYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVSDYCGSQDYDSLL 179
Query: 169 FGARTVYRDIWLGERG-------YV-VCYEMDDIERKLGF---GRNSLITLALLLGSDYS 217
FG+ V R+I + E+ YV V E+ ++E L + R LI +A+LLG+DY+
Sbjct: 180 FGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEAVLNYWKITREQLIAIAMLLGTDYN 239
Query: 218 QGVRGLGPESACQIVKSVGDNV 239
+ V G+GP++A +IVK GD +
Sbjct: 240 EKVPGIGPKTAIEIVKRFGDPI 261
>sp|Q29FC1|GEN_DROPS Flap endonuclease GEN OS=Drosophila pseudoobscura pseudoobscura
GN=Gen PE=3 SV=1
Length = 754
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHR 60
MGVK LW +L + P++ L+ K+V IDL+ W+ + NV + + L+ LF R
Sbjct: 1 MGVKELWTVLTPHAERKPINELRGKKVAIDLAGWVCESLNVVDYF--VHPRHHLKNLFFR 58
Query: 61 LRALIALNCGLIFVSDGSIPAIKLSTYRRRLN-SGSEVTQDDKNLDKMSSLRRNMG-SEF 118
LI +FV +G P +K +R V D ++ + + G + F
Sbjct: 59 TCYLIWEQVTPVFVLEGVAPKLKGQVIAKRNELQFRGVRPKDAATGTQTAAKVDKGRTRF 118
Query: 119 SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDI 178
+ ++K+ + L LS+G+ C++G EAEA A LN L DG S DSD F +GA VYR+
Sbjct: 119 NHVLKQCETLLLSMGIQCVQGPGEAEAYAAFLNKHGLVDGVISQDSDCFAYGAIRVYRNF 178
Query: 179 WLG-------ERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216
+ G V Y+M +I ++ FG++ +I +ALL G DY
Sbjct: 179 SVSTQGAQAAAGGAVDIYDMREITSRMDFGQHKIIVMALLCGCDY 223
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens
GN=ERCC5 PE=1 SV=3
Length = 1186
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 114/241 (47%), Gaps = 24/241 (9%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P ++ EAEAQCA+L+L G + DSDI+LFGAR VYR+ +
Sbjct: 768 MFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRN-FF 826
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 827 NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 877
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W E N +I N D ++++ Q+ +
Sbjct: 878 LNEFPGHGLEPLLKF----SEWW------HEAQKNPKIRPNPHDTKVKKKLRTLQLTPGF 927
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILPKIAERDLR 356
NP A V L+ L ++ C ++F W KTDE + P + + D +
Sbjct: 928 PNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQ 987
Query: 357 R 357
+
Sbjct: 988 Q 988
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q L+ V + + L LFH
Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
RL L+ IFV DG P +K T +R
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKR 91
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis
GN=ercc5 PE=2 SV=1
Length = 1196
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 26/233 (11%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L G+P + EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 801 MCLESQELLQLFGIPYIVAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKN-FF 859
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ DI +LG R+ LI LA LLGSDY++G+ +G SA +I
Sbjct: 860 SQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPTVGYVSAMEI--------- 910
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L +GL + + KE WS E ++++ N D ++++ + ++
Sbjct: 911 LNEFPGQGLEPLVKF----KEWWS------EAQKDKKMRPNPNDTKVKKKLRLLDLQQSF 960
Query: 301 SNPKCYSADSEAVHRVLAQHLFQHAR-----LHQVCAQFFQWPPEKTDEYILP 348
NP SA + V ++ F R + + C F W KTDE +LP
Sbjct: 961 PNPAVASAYLKPVVDE-SKSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLP 1012
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + + L+ K + +D+S W+ Q ++ L LFH
Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD 100
RL L+ IFV DG P +K T +R + + D
Sbjct: 61 RLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASND 101
>sp|A8AAC1|FEN_IGNH4 Flap endonuclease 1 OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=fen PE=3 SV=1
Length = 350
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 129/272 (47%), Gaps = 34/272 (12%)
Query: 1 MGVKNLWDILES-CKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL----- 52
MGV L +++ S CKKTL L L NK V +D + Q + RP D
Sbjct: 1 MGVTALRELIPSKCKKTLELKSLSNKSVALDAYNTLYQFLAAIRGEDGRPLMDSKGRVTS 60
Query: 53 FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKN 103
L GLF+R ++ + +V DG+ P +K RR E + D +
Sbjct: 61 HLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYEEAVRRGDVEE 120
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
K + + + E M++EAK L ++GVP ++ E EAQ A + + S D
Sbjct: 121 ARKYAQMSAKLTKE---MVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDVWASASQD 177
Query: 164 SDIFLFGARTVYRDIWLGER------GYVVCYEMDDIERK-----LGFGRNSLITLALLL 212
D LFG+ + R++ + R V + ++I K LG R L+ +A+L+
Sbjct: 178 YDSLLFGSPRLVRNLAVSGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQLVAIAVLI 237
Query: 213 GSDYSQGVRGLGPESACQIVKSVGDNVVLQRI 244
G+DY+ GV+G+GP++A + VKS GD L+R+
Sbjct: 238 GTDYTPGVKGVGPKTALRYVKSYGD---LERV 266
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus
GN=Ercc5 PE=1 SV=4
Length = 1170
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
M E++ L GVP ++ EAEAQCA+L+L G + DSDI+LFGAR VY++ +
Sbjct: 767 MFLESQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKN-FF 825
Query: 181 GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVV 240
+ +V Y+ D +LG RN LI LA LLGSDY++G+ +G +A +I
Sbjct: 826 NKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEI--------- 876
Query: 241 LQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAY 300
L GL + + E W NNK ++ N D ++++ Q+ +
Sbjct: 877 LNEFPGRGLDPLLKF----SEWWHEAQNNK------KVAENPYDTKVKKKLRKLQLTPGF 926
Query: 301 SNPKCYSAD-SEAVHRVLAQHLFQHARLHQV---CAQFFQWPPEKTDEYILP 348
NP A V L+ + ++ C ++F W KTDE + P
Sbjct: 927 PNPAVADAYLRPVVDDSRGSFLWGKPDVDKISTFCQRYFGWNRMKTDESLYP 978
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV+ LW +LE + L+ K + +D+S W+ Q L+ V S+ + L LFH
Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFH 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIK---LSTYRRRLNSGS 95
RL L+ IFV DG P +K L+ R+R +S S
Sbjct: 61 RLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSAS 99
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad13 PE=2 SV=2
Length = 1112
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 121/257 (47%), Gaps = 17/257 (6%)
Query: 109 SLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
S +R+ MIKE + L G+P + +EAEAQC+ L L DG + DSD+FL
Sbjct: 744 SEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKLVDGIVTDDSDVFL 803
Query: 169 FGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLGPESA 228
FG VYR+++ + +V Y MDD++R+ + LI LA LLGSDY+ G+ +GP A
Sbjct: 804 FGGTRVYRNMF-NQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSRVGPVLA 862
Query: 229 CQIVKSV-GDNVVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSL 287
+I+ GD GL K+ G + K N+ + + IN L
Sbjct: 863 LEILHEFPGDT---------GLFEFKKWFQRLSTGHASK-NDVNTPVKKRINKLVGKIIL 912
Query: 288 QRETPFSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYIL 347
E P V +AY +P DS+ + L L Q W ++T+E +L
Sbjct: 913 PSEFPNPLVDEAYLHPAV--DDSKQSFQWGIPDL---DELRQFLMATVGWSKQRTNEVLL 967
Query: 348 PKIAERDLRRFANLRAN 364
P I + ++F ++N
Sbjct: 968 PVIQDMHKKQFVGTQSN 984
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQ-LQNVNKSYRPQTDKLFLRGLFH 59
MGV LWDILE K+ + L L NKR+ ID S WI Q L+ V Q + G F
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 60 RLRALIALNCGLIFVSDGSIPAIKLSTYRRR 90
R+ L+ +FV DG P++K T ++R
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKR 91
>sp|Q980U8|FEN_SULSO Flap endonuclease 1 OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=fen PE=1 SV=2
Length = 349
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 29/259 (11%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L D+++ K+ L L+ KRV ID + Q + +P L L
Sbjct: 2 DLADLVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLS 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD---DKNLDKMSSLRR 112
GLF+R ++ I+V DG P K RR + E + K+ K+ LR+
Sbjct: 60 GLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRK 119
Query: 113 NMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLF 169
+ + M++E+K L ++G+P ++ E EA+ A LN L S D D LF
Sbjct: 120 YSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILF 179
Query: 170 GARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDYS- 217
GA+ + R++ + G+R YV E + + +KLG R LI + +L+G+DY+
Sbjct: 180 GAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNP 239
Query: 218 QGVRGLGPESACQIVKSVG 236
G+RG+GPE A +I+K G
Sbjct: 240 DGIRGIGPERALKIIKKYG 258
>sp|A8B672|FEN1_GIAIC Flap endonuclease 1 OS=Giardia intestinalis (strain ATCC 50803 / WB
clone C6) GN=FEN1 PE=3 SV=1
Length = 361
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 25/253 (9%)
Query: 1 MGVKNLWDILE-----SCKKTLPLHHLQNKRVCIDLSCWIVQLQNV----------NKSY 45
MG++ L ++E + K L + H NK + ID S + Q N S
Sbjct: 1 MGIRGLAKLIEEVAPAAVSKRL-IQHYCNKVIAIDASVMLYQFITTITSGDGTALANSSG 59
Query: 46 RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGSEVTQ---- 99
+ L GL ++ L IFV DG P K RR+ +E+ Q
Sbjct: 60 EVTS---HLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQKAE 116
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
++ NL++ L R K+A+ L +LG+P + EAEAQC + E +C+G
Sbjct: 117 EEGNLERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVCEGV 176
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
SSD D+ FG+ + R++ G +V ++ + ++LGF + + L +L G DY+
Sbjct: 177 ASSDLDVLAFGSPCLIRNLAQGGDREIVEINLNTVLKELGFSYDEFLDLCILCGCDYANS 236
Query: 220 VRGLGPESACQIV 232
+ G+GP++A +++
Sbjct: 237 LEGIGPKTAYKLI 249
>sp|Q976H6|FEN_SULTO Flap endonuclease 1 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=fen PE=3 SV=2
Length = 351
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 37/264 (14%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L +++E KK L L+ K++ ID + Q + +P L L
Sbjct: 2 DLAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIR--QPDGTPLMDSQGRVTSHLN 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL-----------NSGSEVTQDDKNL 104
GLF+R +++ I+V DG P K RR + +E + L
Sbjct: 60 GLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSEL 119
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + + +E M +E+K L ++G+P ++ E EA+ A +N+ L S D
Sbjct: 120 KKYAQMSIRLTNE---MAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWATASQDY 176
Query: 165 DIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGFGRNSLITLALLLG 213
D LFGA+ + R++ L G+ YV E+D + +KLG R LI + +++G
Sbjct: 177 DSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDIGIIVG 236
Query: 214 SDYS-QGVRGLGPESACQIVKSVG 236
+DY+ G++G G ++A +I+K G
Sbjct: 237 TDYNPDGIKGYGVKTAYRIIKKYG 260
>sp|Q4JAN1|FEN_SULAC Flap endonuclease 1 OS=Sulfolobus acidocaldarius (strain ATCC 33909
/ DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=fen
PE=3 SV=2
Length = 349
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 35/259 (13%)
Query: 5 NLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF---------LR 55
+L +I+E K+ + L+ ++ K++ ID I Q + +P L L
Sbjct: 2 DLGEIVEDVKREINLNEMKGKKISIDAYNTIYQF--LAAIRQPDGTPLIDSKGRITSHLN 59
Query: 56 GLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR---------LNSGSEVTQDDKNLDK 106
GLF+R ++I IFV DG P K RR +++ + + + K
Sbjct: 60 GLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRK 119
Query: 107 MSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDI 166
+ + +E M++E+K L ++G+P ++ E EA+ A +N L S D D
Sbjct: 120 YAQAAVRLSNE---MVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLSWAAASQDYDS 176
Query: 167 FLFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSD 215
LFGA+ + R+I + G+R YV E++ + +KLG R LI +A+L+G+D
Sbjct: 177 LLFGAKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQLIDIAILIGTD 236
Query: 216 YS-QGVRGLGPESACQIVK 233
Y+ GV+G+G ++A +I+K
Sbjct: 237 YNPDGVKGIGVKTALRIIK 255
>sp|C9ZKW4|FEN1_TRYB9 Flap endonuclease 1 OS=Trypanosoma brucei gambiense (strain
MHOM/CI/86/DAL972) GN=FEN1 PE=3 SV=1
Length = 393
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MGV K L+D K L +R+ ID S + Q K ++ Q+ +L
Sbjct: 1 MGVLGLSKLLYDRTPGAIKEQELKVYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L G+F R +I I+V DG P +K S R +
Sbjct: 61 AGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFEKAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS +G + ++E K L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGDDEAMEKMSKRMVRVGRD---QMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+R + R + GE + + Y +D+I GF I L +LLG D
Sbjct: 178 AVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y + G+GP A + +K G
Sbjct: 238 YVPRISGIGPHKAWEGIKKYG 258
>sp|Q57WW6|FEN1_TRYB2 Flap endonuclease 1 OS=Trypanosoma brucei brucei (strain 927/4
GUTat10.1) GN=FEN1 PE=3 SV=1
Length = 393
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 28/261 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRP-QTDKL--- 52
MGV K L+D K L +R+ ID S + Q K ++ Q+ +L
Sbjct: 1 MGVLGLSKLLYDRTPGAIKEQELKVYFGRRIAIDASMAVYQFVIAMKGFQEGQSVELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L G+F R +I I+V DG P +K S R +
Sbjct: 61 AGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFEKAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS +G + ++E K L +G+P ++ EAEAQCA L ++
Sbjct: 121 EGDDEAMEKMSKRMVRVGRD---QMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+R + R + GE + + Y +D+I GF I L +LLG D
Sbjct: 178 AVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y + G+GP A + +K G
Sbjct: 238 YVPRISGIGPHKAWEGIKKYG 258
>sp|A2BMI0|FEN_HYPBU Flap endonuclease 1 OS=Hyperthermus butylicus (strain DSM 5456 /
JCM 9403) GN=fen PE=3 SV=1
Length = 350
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 121/271 (44%), Gaps = 35/271 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------- 53
MGV I + + L HL+ K V ID + Q + +P L
Sbjct: 1 MGVNIREVIPPEAIQEIDLAHLKYKVVAIDAYNALYQFLTAIR--QPDGTPLMDSKGRIT 58
Query: 54 --LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDK 102
L GLF+R L+ +++V DG P +K RR SE + D K
Sbjct: 59 SHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYEEAVKKGDTK 118
Query: 103 NLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
+ + + + E M+++AK L ++GVP ++ E EAQ A + S
Sbjct: 119 AARRYAQMAARLTDE---MVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDAWAAASQ 175
Query: 163 DSDIFLFGARTVYRDIWLGERG-------YVVC----YEMDDIERKLGFGRNSLITLALL 211
D D LFG+ + R++ + R YV E+D + + LG R L+ L +L
Sbjct: 176 DYDSLLFGSPRLVRNLAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQLVALGIL 235
Query: 212 LGSDYS-QGVRGLGPESACQIVKSVGDNVVL 241
+G+DY+ GV+G+GP++A ++VK+ D V L
Sbjct: 236 IGTDYNPDGVKGIGPKTALKMVKAHRDPVKL 266
>sp|Q8PYF6|FEN_METMA Flap endonuclease 1 OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fen PE=3
SV=1
Length = 338
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 35/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V +D + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L GL +R +L+ +FV DG P +K T RR E+ + K + + N
Sbjct: 58 LSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRR----KEIRESSKEKWENAKAEGN 113
Query: 114 MGSEFSC----------MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
+ + + +I+++K L +G+P ++ E EAQ A + L+ D S D
Sbjct: 114 LEAAYKYAQASSKVDQDIIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDADCVASQD 173
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIER---KLGFGRNSLITLALLL 212
D FLFGA TV R++ G+ YV V EM ++E LG R+ LI +A+ +
Sbjct: 174 YDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQLIDIAICV 233
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++G+ +GP++A +++K G+
Sbjct: 234 GTDYNKGLEKVGPKTALKLIKKHGN 258
>sp|A6UX46|FEN_META3 Flap endonuclease 1 OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=fen PE=3 SV=1
Length = 326
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 141/302 (46%), Gaps = 35/302 (11%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLR-----------GLFHRLR 62
KK + + L+NK V ID I Q + S R + D LR G+F++
Sbjct: 11 KKNISITDLKNKTVAIDSMNIIYQFLS---SIRLR-DGAPLRNSKGEITSPYNGIFYKTI 66
Query: 63 ALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS----EVTQDDKNLDKMSSLRRNMGS 116
L+ I+V DG P +KL T RR++ + E+ + ++N++ M + +
Sbjct: 67 YLLNNEITPIWVFDGKPPELKLKTREERRKVKEKASKDYEIAKREENIEDMQKYAKRINY 126
Query: 117 EFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALL--NLESLCDGCFSSDSDIFLFGARTV 174
+ K L +G+P ++ E EAQCA + N ++ C S D D L+GA
Sbjct: 127 LEPNTVDNCKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDAYC--VVSQDYDALLYGAPRT 184
Query: 175 YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYS-QGVRGLGPESACQIVK 233
R+I + + E++DI + L + LI +A+L+G+DY+ G++G+GP+ A I+K
Sbjct: 185 VRNITASNKP-LELMEIEDILKPLDISIDDLIDMAILIGTDYNIGGIKGIGPKKALTIIK 243
Query: 234 SVGDNVVLQRIASEGLSFVKRA-KNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292
+ N ++ I E +K KN K ++ KE+ + N+ G L E
Sbjct: 244 NKKMNEYIKDI--ENYEEIKNIFKNPKVVDYT-----KEDIKLKSPNIEGLKEFLIEEND 296
Query: 293 FS 294
FS
Sbjct: 297 FS 298
>sp|Q0W6I0|FEN_UNCMA Flap endonuclease 1 OS=Uncultured methanogenic archaeon RC-I GN=fen
PE=3 SV=1
Length = 340
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 26/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV +L ++E + + L L N+ V +D + Q ++ + P D
Sbjct: 1 MGV-DLGGLVEP--REIELKELNNRTVAVDAYNTLYQFLSIIRQQDGAPLADDRGNVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRN 113
L G+ +R+ L+ +FV DG P+ K T + R Q + S
Sbjct: 58 LSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKARAEVREAARQMYEAAKAAGSAEAY 117
Query: 114 MGSEFSC-----MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFL 168
++ S ++ +AK L +G+P + E EAQ A + D S D D L
Sbjct: 118 KYAQASTSINRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAADYVGSQDYDSLL 177
Query: 169 FGARTVYRDIWLGERGYVV-----------CYEMDDIERKLGFGRNSLITLALLLGSDYS 217
FGA V R+I + + V E+ ++ LG R LI +A+L+G+DY+
Sbjct: 178 FGAPRVVRNIAITGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREELIDMAILVGTDYN 237
Query: 218 QGVRGLGPESACQIVKSVGDNV 239
G+ +GP++A ++VK GDN+
Sbjct: 238 PGIFKVGPKTALKLVKKHGDNM 259
>sp|Q4DKQ5|FEN1_TRYCC Flap endonuclease 1 OS=Trypanosoma cruzi (strain CL Brener) GN=FEN1
PE=3 SV=1
Length = 393
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 125/291 (42%), Gaps = 35/291 (12%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR-PQTDKL--- 52
MG+ K L+D + + L + +R+ ID S I Q K ++ Q +L
Sbjct: 1 MGILGLSKLLYDRSPAAIRERELKNYFGRRIAIDASMTIYQFIIAMKGFQDGQGMELTNE 60
Query: 53 ------FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L GLF R ++ I+V DG P +K S + R E Q
Sbjct: 61 AGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFDTAKE 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
+D+ ++KMS + E ++EAK L +G+P ++ EAEAQCA L +
Sbjct: 121 EGNDELMEKMSKRTVRVSRE---QLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FGA + R + E + + + +D+I G I L +LLG D
Sbjct: 178 AVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
Y + G+GP+ A + +K GD L L + ++S EG+ ++
Sbjct: 238 YVPKIPGIGPQKAWEGIKKHGDIETL-------LQSLDAGRHSVPEGFHYE 281
>sp|Q9YFY5|FEN_AERPE Flap endonuclease 1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=fen PE=3 SV=3
Length = 350
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKL--------------STYRRRLNSGSEVTQ 99
L GLF+R L+ ++V DG P +K + YRR + +G EV +
Sbjct: 61 LSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAG-EVEE 119
Query: 100 DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
K + L S M++E+K L ++G+P ++ E EAQ A + +
Sbjct: 120 ARKYAMMAARL-------TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDAWAT 172
Query: 160 FSSDSDIFLFGARTVYRDIWL-------GERGYV----VCYEMDDIERKLGFGRNSLITL 208
S D D LFG+ + R++ + G YV E++ + KLG R LI +
Sbjct: 173 GSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQLIAV 232
Query: 209 ALLLGSDYSQ-GVRGLGPESACQIVKSVGD 237
+LLG+DY+ GVRG GP++A ++VKS+GD
Sbjct: 233 GILLGTDYNPGGVRGYGPKTALRLVKSLGD 262
>sp|Q4UFP0|FEN1_THEAN Flap endonuclease 1 OS=Theileria annulata GN=FEN1 PE=3 SV=1
Length = 506
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 24/254 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL----------QNVNKSYR 46
MG+K L L S L L L + + ID S + Q ++ S
Sbjct: 1 MGIKGLIPFLSEKVPSSISELSLECLSGESLAIDASAALYQFTIAIRDSSYFSSLVNSKG 60
Query: 47 PQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNL-- 104
T ++ GL +R L+ +FV D P +K T +R E D K
Sbjct: 61 ESTSHIY--GLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFKKAIS 118
Query: 105 --DKMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGC 159
DK S+ ++ +G M AK L +G+P +E +EEAEAQCA L ++LC
Sbjct: 119 EGDKESA-KKLVGRTVKVTKDMNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLCHFV 177
Query: 160 FSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQG 219
S D+D +FG + R++ +V ++ + L F + + +L G DY
Sbjct: 178 ASEDTDTLVFGGWFLLRNVTSSANKKIVKVDLQKVLDGLEFNFDQFVDFCILCGCDYCDT 237
Query: 220 VRGLGPESACQIVK 233
+ G+GP++A +VK
Sbjct: 238 LEGVGPKTAYSLVK 251
>sp|A8M9L3|FEN_CALMQ Flap endonuclease 1 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=fen PE=3
SV=1
Length = 350
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 31/265 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ ++ ++ + L L K + +D + Q + +P L
Sbjct: 1 MGVTELGKLIPDNLRRRVSLEQLNGKLIALDAYNALYQF--LASIRQPDGTPLMDSQGRV 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD-DKNLD--KM 107
L GL +R L+ ++V DG P +KL +R + +D K ++ K
Sbjct: 59 TSHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWIKAVEEGKK 118
Query: 108 SSLRRNMGSEF---SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
S R+ S M+ EAK L S+GVP ++ E EAQ A + + + S D
Sbjct: 119 SEARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIVWAAGSQDY 178
Query: 165 DIFLFGARTVYRDIWL-------GERGYVVC----YEMDDIERKLGF-GRNSLITLALLL 212
D FLFGA + R++ + G YV E++D+ + L R LI LA+LL
Sbjct: 179 DSFLFGAPRLVRNLTISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQLIDLAILL 238
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ +G+ G+GP+ A ++++ G
Sbjct: 239 GTDYNPEGIPGIGPQRALRLIQEYG 263
>sp|A8J2Z9|FEN1_CHLRE Flap endonuclease 1 OS=Chlamydomonas reinhardtii GN=FEN1 PE=3 SV=1
Length = 396
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 107/261 (40%), Gaps = 31/261 (11%)
Query: 1 MGVKNLWDIL----ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF--- 53
MG+ L +L C K +L ++V +D S I Q V Q D+L
Sbjct: 1 MGIHGLTKLLGDNAPGCIKETKFENLFGRKVAVDASMHIYQFMVVVGR---QGDQLLTNE 57
Query: 54 -------LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
L+G+F R ++ ++V DG P +K +R ++ +
Sbjct: 58 AGEITSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEALEKAKE 117
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
D + ++K S + E + E K L +GVP +E EAEAQCA + L
Sbjct: 118 AGDQEAIEKYSKRSVRVTREHN---DECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGLVY 174
Query: 158 GCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSD 215
G + D D FGA V R + V E D R+L + I L +L+G D
Sbjct: 175 GLATEDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELTDDQFIDLCILMGCD 234
Query: 216 YSQGVRGLGPESACQIVKSVG 236
Y +RG+G A Q++K G
Sbjct: 235 YCGTIRGIGAVRALQMIKKHG 255
>sp|C6A1U9|FEN_THESM Flap endonuclease 1 OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=fen PE=3 SV=1
Length = 340
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
KK L L +L ++V ID I Q + K P D L GLF+R L+
Sbjct: 11 KKELELENLNGRKVAIDAFNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E + L++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKKKELEKRAETREEALEKWEIALARGELEEAKKYAQRASKINEI 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++ +
Sbjct: 131 LIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDVWASASQDYDSLLFGTPKLVRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E ++D+ ++L R LI LA+L+G+DY+ G++GLGP+ A
Sbjct: 191 TGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKLIELAILVGTDYNPGGIKGLGPKKA 250
Query: 229 CQIVKSVGD 237
+IVK D
Sbjct: 251 LEIVKYSKD 259
>sp|Q4N3S6|FEN1_THEPA Flap endonuclease 1 OS=Theileria parva GN=FEN1 PE=3 SV=1
Length = 494
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLD 105
+ GL +R + +FV D P +K T +R E +++ DK
Sbjct: 66 IYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTLEKRRQQREEANASLKKAISEGDK--- 122
Query: 106 KMSSLRRNMGSEFSC---MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
S+++ +G M + AK L +GVP +E +EEAEAQCA L ++LC S
Sbjct: 123 --ESVKKLVGRTVKVSKEMNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLCRFVASE 180
Query: 163 DSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D+D +FG + R++ ++ ++ + L F + I +L G DY + G
Sbjct: 181 DTDTLVFGGAFLLRNVASSSSKKILKVDLQKVLDGLEFNFDQFIDFCILCGCDYCDTLEG 240
Query: 223 LGPESACQIVK 233
+GP++A +VK
Sbjct: 241 VGPKTAYSLVK 251
>sp|O50123|FEN_PYRHO Flap endonuclease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=fen PE=1
SV=1
Length = 343
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
+V DG P K +R + E K NL++ +
Sbjct: 71 AGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFGA + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSLLFGAPRLIRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G V E +D++ ++L R LI LA+L+G+DY+ GV+G+GP+ A
Sbjct: 191 TGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKLIELAILVGTDYNPGGVKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IV+ D
Sbjct: 251 LEIVRYSRD 259
>sp|A3MY15|FEN_PYRCJ Flap endonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 /
VA1) GN=fen PE=3 SV=1
Length = 346
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 123/279 (44%), Gaps = 31/279 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L L K C+ L + Q + +P L
Sbjct: 1 MGVTELGKLIGKEARREIKLESLAGK--CVALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR-------LNSGSEVTQDDKN 103
L GLF+R L+ ++V DG P KL +R L + ++ +
Sbjct: 59 TSHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRR 118
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
D +R + S M+++AK L +G+P ++ E EAQ A + C S D
Sbjct: 119 EDVAKYAKRAIFLT-SEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 164 SDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLG 213
D LFG+ + R++ + + V E+D + + L GR LI LA+LLG
Sbjct: 178 YDSLLFGSPRLVRNLAVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLIDLAILLG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVGDNVVLQRIASEGLSF 251
+DY+ +GV G+GP+ A +++ G L + +G+ F
Sbjct: 238 TDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTVLKGVQF 276
>sp|Q12UT1|FEN_METBU Flap endonuclease 1 OS=Methanococcoides burtonii (strain DSM 6242)
GN=fen PE=3 SV=1
Length = 338
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 28/272 (10%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L K T+ + L NK V ID + Q ++ + P D
Sbjct: 1 MGT-DIGDLL--LKDTIEIAGLSNKVVAIDAYNTLYQFLSIIRQRDGTPLKDSRGQITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVT---QDDK--NLDKMS 108
L G+ +RL +LI IFV DG P K T +R T +D K L++ +
Sbjct: 58 LSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAKWEDAKAQGLEEEA 117
Query: 109 SLRRNMGSEFSC-MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
S+ + MI ++ L +G+P ++ E EAQ + + + D S D D F
Sbjct: 118 YKYAQASSKVTREMIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDADYIGSQDYDSF 177
Query: 168 LFGARTVYRDIWL-GERG------YV----VCYEMDDIERKLGFGRNSLITLALLLGSDY 216
LFGA V R++ + G+R YV + D +LG R LI +A+ +G+DY
Sbjct: 178 LFGAPQVVRNLTITGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQLIDIAMCVGTDY 237
Query: 217 SQGVRGLGPESACQIVKSVGD-NVVLQRIASE 247
+ G+ +GP+ A ++VK GD VVL+ + +
Sbjct: 238 NTGLENIGPKRALKLVKEHGDIKVVLKELGKD 269
>sp|Q46D63|FEN_METBF Flap endonuclease 1 OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=fen PE=3 SV=1
Length = 338
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 127/264 (48%), Gaps = 33/264 (12%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MG ++ D+L+ K+ + L L N+ V ID + Q ++ + P +
Sbjct: 1 MGT-DIGDLLQ--KRKIELSDLTNQVVAIDAFNTLHQFLSIIRQRDGNPLVNSRGKVTSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLN---------SGSEVTQDDKNL 104
L GL +R +LI + +F+ DG P +K T RR ++V D +
Sbjct: 58 LSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESSLEKWENAKVEGDLEAA 117
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
K + + E +++++K L +G+P ++ E EAQ A + L+ D S D
Sbjct: 118 YKYAQASSKVDQE---IVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDADYVASQDY 174
Query: 165 DIFLFGARTVYRDIWL-GERGYVVCYEMDDIERK----------LGFGRNSLITLALLLG 213
D FLFGA TV R++ + G+R + D+E + LG R LI +A+ +G
Sbjct: 175 DSFLFGAPTVIRNLAVTGKRKLPGKHVYVDVELELIELEETLGVLGINREQLIDIAICVG 234
Query: 214 SDYSQGVRGLGPESACQIVKSVGD 237
+D+++G+ +GP++A +++K GD
Sbjct: 235 TDFNKGLEKVGPKTALKLIKKHGD 258
>sp|O29975|FEN_ARCFU Flap endonuclease 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=fen PE=1
SV=1
Length = 336
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 36/265 (13%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKL-------- 52
MG ++ D+ E ++ + L + K++ +D + Q ++ + +P L
Sbjct: 1 MGA-DIGDLFE--REEVELEYFSGKKIAVDAFNTLYQFISIIR--QPDGTPLKDSQGRIT 55
Query: 53 -FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ--------DDKN 103
L G+ +R+ ++ + +FV DG P K + R +E + DK+
Sbjct: 56 SHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKD 115
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
K + + G ++ AK L +G+P ++ E EAQ A + + + S D
Sbjct: 116 AKKYA---QAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQD 172
Query: 164 SDIFLFGARTVYRDIWL-------GERGYV-VCYEMDDIE---RKLGFGRNSLITLALLL 212
D LFG+ + R++ + G+ YV V E+ +E ++LG R LI +A+L+
Sbjct: 173 YDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILV 232
Query: 213 GSDYSQGVRGLGPESACQIVKSVGD 237
G+DY++GV+G+G + A +K+ GD
Sbjct: 233 GTDYNEGVKGVGVKKALNYIKTYGD 257
>sp|Q75DS8|FEN1_ASHGO Flap endonuclease 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=FEN1 PE=3 SV=2
Length = 378
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 124/285 (43%), Gaps = 26/285 (9%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-------QNVNKSYRPQT 49
MG+K L I++ S + + +RV ID S + Q V +
Sbjct: 1 MGIKGLNSIIQQQVPSAIRPREMKQFFGRRVAIDASMSLYQFLIAVRQADGVQLASADGE 60
Query: 50 DKLFLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSS 109
L G+F+R ++ +V DG P +K +R E Q L + +
Sbjct: 61 TTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTERRKETEQKLAELTEQAE 120
Query: 110 L----RRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ RR + E + + K LGL +G+P ++ EAEAQCA L + S D D
Sbjct: 121 IMKHERRLVKVEQWHVAEAKKLLGL-MGIPYVDAPGEAEAQCAELAKKGKVFAAASEDMD 179
Query: 166 IFLFGARTVYRDIWLGERGYVVCYEMDD--IERKLGFGRNSLITLALLLGSDYSQGVRGL 223
+ + R + E +E+D + + LG + L+ L ++LG DY + ++G+
Sbjct: 180 TLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGCDYCESIKGV 239
Query: 224 GPESACQIVKSVG--DNVVLQRIASEGLSFVKRAKNSKKEGWSFK 266
GP +A +++K G +N+V + I+S G AK E W +K
Sbjct: 240 GPVTALKLIKEHGSLENIV-EFISSGG-----NAKWKVPENWPYK 278
>sp|A5UL52|FEN_METS3 Flap endonuclease 1 OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=fen PE=3 SV=1
Length = 327
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 120/249 (48%), Gaps = 21/249 (8%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDK-----LF 53
MGVK L DI++ + + L+ + + ID + Q + + RP +D
Sbjct: 1 MGVK-LKDIIQP--EQIDFKDLKGRAISIDAFNTLYQFLSTIRQRDGRPLSDSNGNITSH 57
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSE--------VTQDDKNLD 105
L G+ +R ++I + I+V DG+ +K T +R + E + + D
Sbjct: 58 LSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWKEALAKQDTQEA 117
Query: 106 KMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSD 165
+ ++R + S + +I+ +K L +G+P +E E EAQ A L S D D
Sbjct: 118 RKYAMRSSKLSPY--IIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYD 175
Query: 166 IFLFGARTVYRDIWLGER-GYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGLG 224
LFGA+ V R++ + G + Y + + +L R LI + +L+G+D+S+G++G+G
Sbjct: 176 CLLFGAKRVVRNLAINSNLGDLEYYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVG 235
Query: 225 PESACQIVK 233
++A ++ K
Sbjct: 236 AKTALKLAK 244
>sp|Q54NU0|FEN1_DICDI Flap endonuclease 1 OS=Dictyostelium discoideum GN=repG PE=3 SV=1
Length = 384
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 123/259 (47%), Gaps = 33/259 (12%)
Query: 1 MGVKNLWDILE----SCKKTLPLHHLQNKRVCIDLSCWIVQL-----QNVNKSYRPQTDK 51
MG+K L D++E + KT L + + + ID S + Q +V+ + Q +
Sbjct: 1 MGIKKLTDLIEDNAPTSIKTNILKNYFGRIIAIDASTSLYQFLIAMNADVSSALTNQLGE 60
Query: 52 L--FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRR----------LNSGSEVTQ 99
L+G+F+R LI+ I+V DGS P +K +R L +EV
Sbjct: 61 TTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLKEATEVGT 120
Query: 100 DD---KNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLC 156
++ K ++ ++ R + C+ K L L +GVP ++ EAEAQCA + +
Sbjct: 121 NEEVQKFAKRVITVTRKQNED--CI----KLLTL-MGVPIVKAPCEAEAQCAEIVKKGKA 173
Query: 157 DGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGS 214
S D D G+ + R ++ E + ++ +E+ + LG ++ I L++LLG
Sbjct: 174 WATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGC 233
Query: 215 DYSQGVRGLGPESACQIVK 233
DY ++G+GP+ A ++++
Sbjct: 234 DYCDSIKGIGPKRAIELIQ 252
>sp|Q8ZYN2|FEN_PYRAE Flap endonuclease 1 OS=Pyrobaculum aerophilum (strain ATCC 51768 /
IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=fen PE=3
SV=1
Length = 346
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 33/265 (12%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L L K CI L + Q + +P L
Sbjct: 1 MGVTELGKLIGKEVRREVKLESLSGK--CIALDAYNALYQFLASIRQPDGTPLMDRAGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDKNLDKMSSL 110
L GLF+R L+ ++V DG P KL+ R + + ++ L +
Sbjct: 59 TSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEE--VLRAIKEG 116
Query: 111 RRNMGSEF--------SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSS 162
RR +++ S M+ EAK L +GVP ++ E EAQ A + + C S
Sbjct: 117 RREDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQ 176
Query: 163 DSDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLL 212
D D LFG+ + R++ + + + E+D + R L R LI LA+LL
Sbjct: 177 DYDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLIDLAILL 236
Query: 213 GSDYS-QGVRGLGPESACQIVKSVG 236
G+DY+ GV G+GP+ A +++ G
Sbjct: 237 GTDYNPDGVPGVGPQKALKLIWEFG 261
>sp|Q9V0P9|FEN_PYRAB Flap endonuclease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=fen PE=3 SV=1
Length = 343
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 114/249 (45%), Gaps = 25/249 (10%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K++ ID I Q + + P D L GLF+R L+
Sbjct: 11 RKEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKMSSLRRNMGSEFSC 120
++V DG PA K +R + E K ++++ +
Sbjct: 71 AGIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEM 130
Query: 121 MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWL 180
+I++AK L +G+P ++ E EAQ A + + S D D LFG + R++ +
Sbjct: 131 LIEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSLLFGTPRLVRNLTI 190
Query: 181 -GER---GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPESA 228
G+R G + E ++++ ++L R LI LA+L+G+DY+ G++G+GP+ A
Sbjct: 191 TGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKLIELAILVGTDYNPGGIKGIGPKKA 250
Query: 229 CQIVKSVGD 237
+IVK D
Sbjct: 251 LEIVKYSKD 259
>sp|B8GIA0|FEN_METPE Flap endonuclease 1 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=fen PE=3 SV=1
Length = 333
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 15/198 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RR--RLNSGSEVTQDDKNLDKMSS 109
L G+F R + +++ DG PA+K T RR R +G + D+ +
Sbjct: 59 LSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVRREAGVQWEAALARGDQEEA 118
Query: 110 LRRNMGSEFSC--MIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
++ S +I +K L +GVPC++ E EAQ A + S D D
Sbjct: 119 YKQARASSRVTPEIIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAVTYAVSQDYDSL 178
Query: 168 LFGARTVYRDIWLGER----GYVVCYE-----MDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R++ + + G + + +D++ LG R LI +L+G+D++
Sbjct: 179 LFGAPLLVRNLTVSSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIEAGILIGTDFNP 238
Query: 219 GVRGLGPESACQIVKSVG 236
G+RG+GP++A +IVK G
Sbjct: 239 GIRGVGPKTALKIVKKDG 256
>sp|A2SQC6|FEN_METLZ Flap endonuclease 1 OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=fen PE=3 SV=1
Length = 333
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 15/195 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRL----NSGSEVTQDDKNLDKMSS 109
L GL R LI N I+V DG P K ST +R N+ + K D+ S+
Sbjct: 59 LSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWEKALKEGDEESA 118
Query: 110 LRRNMGSEF--SCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ M S + +I +K L +LG+ ++ EE EAQ + + S D D
Sbjct: 119 RKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDVTYAVSQDYDSL 178
Query: 168 LFGARTVYRDIWLGE----RGYVVCY-----EMDDIERKLGFGRNSLITLALLLGSDYSQ 218
LFGA + R+I + RG V+ ++++ L + LI +ALL+G+DY+
Sbjct: 179 LFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQIALLIGTDYNS 238
Query: 219 GVRGLGPESACQIVK 233
GV G+GP++A +IV+
Sbjct: 239 GVPGVGPKTAVKIVR 253
>sp|A4HFE4|FEN1_LEIBR Flap endonuclease 1 OS=Leishmania braziliensis GN=FEN1 PE=3 SV=1
Length = 395
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 28/262 (10%)
Query: 1 MGV----KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYR---------P 47
MG+ K L+D + + L +R+ ID S I Q K ++
Sbjct: 1 MGILGLSKLLYDKSPNAIRERELKSFFGRRIAIDASMSIYQFIIAMKGFQDGQGMELTNE 60
Query: 48 QTDKL-FLRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ------- 99
Q D L GLF R +I I+V DG P +K R +E +
Sbjct: 61 QGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQKAAEAEREFEKAKD 120
Query: 100 --DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCD 157
DD+ ++KMS + E I+E+K L +GVP ++ EAEAQCA L +
Sbjct: 121 AGDDEMMEKMSKRTVRVSRE---QIEESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKAW 177
Query: 158 GCFSSDSDIFLFGARTVYRDIWL--GERGYVVCYEMDDIERKLGFGRNSLITLALLLGSD 215
+ D D FG+ + R + + ++ + +D++ + G + + L +LLG D
Sbjct: 178 AVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGCD 237
Query: 216 YSQGVRGLGPESACQIVKSVGD 237
Y V G+GP+ A + ++ G+
Sbjct: 238 YVPKVPGIGPQRAWEGIQRYGN 259
>sp|A1RSC7|FEN_PYRIL Flap endonuclease 1 OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=fen PE=3 SV=1
Length = 346
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
Query: 1 MGVKNLWDIL-ESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLF------ 53
MGV L ++ + ++ + L +L K CI L + Q + +P L
Sbjct: 1 MGVTELGKLIGKDIRREVKLENLAGK--CIALDAYNSLYQFLASIRQPDGTPLMDRVGRI 58
Query: 54 ---LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTY--RRRLNSGS-----EVTQDDKN 103
L GLF+R L+ ++V DG P KL+ RR++ + + ++ +
Sbjct: 59 TSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGRK 118
Query: 104 LDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSD 163
D ++R + S M+++AK L +GVP ++ E EAQ A + C S D
Sbjct: 119 EDVAKYMKRAVFLT-SDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQD 177
Query: 164 SDIFLFGARTVYRDIWLGERGYV---------VCYEMDDIERKLGF-GRNSLITLALLLG 213
D LFG+ + R++ + R + E+D + + L R LI LA+LLG
Sbjct: 178 YDSLLFGSPRLVRNLAVSPRRKIGEEVIELSPEIIELDAVLKSLRLKNREQLIDLAILLG 237
Query: 214 SDYS-QGVRGLGPESACQIVKSVG 236
+DY+ GV G+GP+ A ++V G
Sbjct: 238 TDYNPDGVPGVGPQKALKLVWEFG 261
>sp|A1RWY2|FEN_THEPD Flap endonuclease 1 OS=Thermofilum pendens (strain Hrk 5) GN=fen
PE=3 SV=1
Length = 346
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 26/262 (9%)
Query: 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----F 53
MGV ++ +++E K + L K + ID + Q K P D
Sbjct: 1 MGV-DIKELVEPVAKEVELGFFSKKVIAIDAYNSLYQFLATIRQKDGTPLLDAQGNVTSH 59
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQDDK------NLDKM 107
L GLF+R I L ++V DG P +K RR E + + +L++
Sbjct: 60 LNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYREAIERGDLEEA 119
Query: 108 SSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIF 167
+ + M+ +AK L +GVP +E E EAQ A + + S D D
Sbjct: 120 RIYAQQTSRLTAAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDAWASGSQDFDSL 179
Query: 168 LFGARTVYRDIWL-GERG------YVVC----YEMDDIERKLGFGRNSLITLALLLGSDY 216
LFG+ + R++ + G+R YV E++++ R G L+ + +L+G+DY
Sbjct: 180 LFGSPRLVRNLAITGKRKLPRKDVYVEVKPEIVELEELLRVHGITHQQLVVIGILVGTDY 239
Query: 217 S-QGVRGLGPESACQIVKSVGD 237
+ +G RG+G + A ++VK + D
Sbjct: 240 APEGARGIGVKKALKLVKELKD 261
>sp|A8QCH0|FEN1_BRUMA Flap endonuclease 1 OS=Brugia malayi GN=FEN1 PE=3 SV=1
Length = 378
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 54 LRGLFHRLRALIALNCGLIFVSDGSIPAIKLSTYRRRLNSGSEVTQ---------DDKNL 104
L G+F+R +I ++V DG P +K S +R +E + D+ ++
Sbjct: 64 LLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRNDAVELGDETSV 123
Query: 105 DKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDS 164
+K + E S +EAK L +G+P L+ EAEAQCA L S D
Sbjct: 124 NKFEKRLVKVTKEQS---EEAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKVFATVSEDM 180
Query: 165 DIFLFGARTVYRDIWLGERGYVVCYEM--DDIERKLGFGRNSLITLALLLGSDYSQGVRG 222
D FG+ + R + E + EM + + + G + L +LLG DY +RG
Sbjct: 181 DALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGCDYVSTIRG 240
Query: 223 LGPESACQIVK 233
+GP+ A +++K
Sbjct: 241 IGPKKAFELIK 251
>sp|C5A639|FEN_THEGJ Flap endonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229
/ JCM 11827 / EJ3) GN=fen PE=3 SV=1
Length = 339
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 41/257 (15%)
Query: 14 KKTLPLHHLQNKRVCIDLSCWIVQLQNV--NKSYRPQTDKL-----FLRGLFHRLRALIA 66
+K + L +L K+V ID + Q + + P D L G F+R L+
Sbjct: 11 RKEIELENLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLME 70
Query: 67 LNCGLIFVSDGSIPAIK--------------LSTYRRRLNSGSEVTQDDKNLDKMSSLRR 112
+V DG PA K + L G E+ + K + + L
Sbjct: 71 AGIKPAYVFDGEPPAFKKKELEKRREAREEAEEKWHEALERG-EIEEAKKYAMRATKLN- 128
Query: 113 NMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESLCDGCFSSDSDIFLFGAR 172
+I++AK L +GVP ++ E EAQ A + + S D D LFGA
Sbjct: 129 ------ETLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSLLFGAP 182
Query: 173 TVYRDIWLGER----GYVVCYE-------MDDIERKLGFGRNSLITLALLLGSDYSQ-GV 220
+ R++ + R G V E ++++ R+LG R LI LA+L+G+DY+ G+
Sbjct: 183 RLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKLIELAILVGTDYNPGGI 242
Query: 221 RGLGPESACQIVKSVGD 237
+G+GP+ A IVK D
Sbjct: 243 KGIGPKKALTIVKRSKD 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,284,992
Number of Sequences: 539616
Number of extensions: 8374635
Number of successful extensions: 24108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 23448
Number of HSP's gapped (non-prelim): 276
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)