Query 007971
Match_columns 583
No_of_seqs 296 out of 1451
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ory_A Flap endonuclease 1; hy 100.0 3.1E-58 1.1E-62 487.2 19.5 308 1-355 11-346 (363)
2 3q8k_A Flap endonuclease 1; he 100.0 2.3E-55 8E-60 462.0 26.5 310 2-352 1-330 (341)
3 1b43_A Protein (FEN-1); nuclea 100.0 1.3E-55 4.5E-60 463.8 20.8 300 1-353 1-326 (340)
4 1a76_A Flap endonuclease-1 pro 100.0 2.2E-53 7.6E-58 444.5 23.2 297 1-354 1-313 (326)
5 1rxw_A Flap structure-specific 100.0 1.8E-52 6.1E-57 439.3 20.6 300 1-352 1-325 (336)
6 1ul1_X Flap endonuclease-1; pr 100.0 1.4E-52 4.8E-57 446.8 18.8 310 2-351 1-329 (379)
7 2izo_A FEN1, flap structure-sp 100.0 1.2E-51 3.9E-56 434.9 18.3 304 9-355 3-332 (346)
8 3qe9_Y Exonuclease 1; exonucle 100.0 6.9E-51 2.3E-55 429.6 18.6 244 1-246 1-259 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 8.3E-35 2.8E-39 298.9 15.8 220 4-247 2-236 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 1.2E-34 4E-39 334.8 -4.0 211 15-247 3-224 (832)
11 3h7i_A Ribonuclease H, RNAse H 99.8 5.2E-20 1.8E-24 188.6 9.6 183 23-226 12-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 98.4 1.1E-06 3.6E-11 104.4 14.0 225 1-225 1-298 (1140)
13 3pie_A 5'->3' exoribonuclease 98.1 5.9E-06 2E-10 97.4 10.4 225 1-225 1-301 (1155)
14 3fqd_A Protein DHP1, 5'-3' exo 98.0 1.7E-05 5.7E-10 91.1 11.6 199 26-224 54-348 (899)
15 3lwe_A M-phase phosphoprotein 97.3 0.00011 3.8E-09 58.3 3.4 56 382-438 6-61 (62)
16 1ap0_A Modifier protein 1; chr 97.1 0.0002 6.7E-09 58.7 2.5 53 382-436 15-67 (73)
17 3mts_A Histone-lysine N-methyl 97.1 8.7E-05 3E-09 59.4 0.2 52 383-436 3-54 (64)
18 3f2u_A Chromobox protein homol 96.9 0.00035 1.2E-08 54.0 2.4 50 382-433 4-53 (55)
19 1pfb_A Polycomb protein; chrom 96.9 0.00038 1.3E-08 53.8 2.2 48 383-432 6-53 (55)
20 2kvm_A Chromobox protein homol 96.8 0.00055 1.9E-08 56.2 2.9 53 382-436 15-67 (74)
21 3fdt_A Chromobox protein homol 96.8 0.00049 1.7E-08 54.0 2.3 51 383-435 6-56 (59)
22 3i91_A Chromobox protein homol 96.7 0.00067 2.3E-08 52.2 2.6 48 383-432 6-53 (54)
23 2d9u_A Chromobox protein homol 96.7 0.0011 3.8E-08 54.4 4.0 61 382-444 12-72 (74)
24 3h91_A Chromobox protein homol 96.6 0.00082 2.8E-08 51.8 2.2 48 383-432 6-53 (54)
25 1q3l_A Heterochromatin protein 96.5 0.0014 4.7E-08 53.2 2.9 50 382-433 18-67 (69)
26 1g6z_A CLR4 protein; transfera 96.5 0.0019 6.7E-08 52.3 3.8 54 382-436 10-65 (70)
27 2dnt_A Chromodomain protein, Y 96.4 0.0022 7.4E-08 53.1 3.6 59 382-442 15-74 (78)
28 1pdq_A Polycomb protein; methy 96.4 0.0013 4.6E-08 53.7 2.3 49 382-432 22-70 (72)
29 2k1b_A Chromobox protein homol 96.1 0.0016 5.4E-08 53.4 1.4 49 382-432 23-71 (73)
30 3g7l_A Chromo domain-containin 95.9 0.0063 2.2E-07 48.0 3.8 50 382-433 9-59 (61)
31 2dnv_A Chromobox protein homol 95.5 0.0038 1.3E-07 49.7 1.2 50 382-433 12-61 (64)
32 2rso_A Chromatin-associated pr 95.1 0.018 6.3E-07 49.1 4.3 54 381-435 31-87 (92)
33 2rsn_A Chromo domain-containin 95.1 0.014 4.8E-07 48.0 3.5 51 382-433 23-74 (75)
34 4hae_A CDY-like 2, chromodomai 93.5 0.0055 1.9E-07 51.2 -2.4 53 382-435 25-78 (81)
35 1x3p_A Cpsrp43; chromo-2 domai 92.3 0.02 6.8E-07 44.1 -0.6 46 383-433 3-50 (54)
36 2epb_A Chromodomain-helicase-D 90.0 0.17 5.8E-06 40.6 2.8 49 382-433 13-67 (68)
37 3kup_A Chromobox protein homol 88.8 0.49 1.7E-05 37.6 4.6 49 383-433 15-63 (65)
38 2a1j_A DNA repair endonuclease 88.7 0.3 1E-05 38.4 3.3 24 218-241 7-30 (63)
39 1ixr_A Holliday junction DNA h 86.2 0.43 1.5E-05 45.8 3.5 32 219-250 76-107 (191)
40 2fmm_A Chromobox protein homol 86.0 0.61 2.1E-05 38.0 3.7 49 383-433 18-66 (74)
41 1z00_B DNA repair endonuclease 85.0 0.69 2.4E-05 38.6 3.7 24 219-242 22-45 (84)
42 1x2i_A HEF helicase/nuclease; 84.6 0.74 2.5E-05 36.4 3.6 22 218-239 17-38 (75)
43 1cuk_A RUVA protein; DNA repai 84.4 0.66 2.3E-05 44.9 3.8 35 219-253 77-111 (203)
44 3i3c_A Chromobox protein homol 84.2 0.63 2.2E-05 38.1 3.0 48 383-432 25-72 (75)
45 2b2y_A CHD-1, chromodomain-hel 84.1 0.65 2.2E-05 44.4 3.6 51 382-432 132-185 (187)
46 2ztd_A Holliday junction ATP-d 83.6 0.38 1.3E-05 47.0 1.7 53 195-253 73-126 (212)
47 1kft_A UVRC, excinuclease ABC 83.3 0.48 1.6E-05 38.4 2.0 22 218-239 27-48 (78)
48 1z00_A DNA excision repair pro 83.2 0.83 2.8E-05 37.8 3.4 22 218-239 22-43 (89)
49 2h1e_A Chromo domain protein 1 83.1 0.53 1.8E-05 44.6 2.5 50 382-431 122-176 (177)
50 3q6s_A Chromobox protein homol 82.3 1.2 4E-05 36.8 3.9 50 383-434 12-61 (78)
51 2ee1_A Chromodomain helicase-D 82.2 0.67 2.3E-05 36.8 2.3 50 382-431 13-63 (64)
52 2a1j_B DNA excision repair pro 81.2 1 3.4E-05 37.6 3.2 21 219-239 36-56 (91)
53 3p7j_A Heterochromatin protein 78.0 1.9 6.5E-05 36.3 3.9 50 383-434 28-77 (87)
54 2nrt_A Uvrabc system protein C 74.9 1.7 6E-05 42.5 3.3 24 218-241 171-194 (220)
55 2bgw_A XPF endonuclease; hydro 60.8 5 0.00017 38.5 3.2 21 219-239 166-186 (219)
56 2b2y_C CHD-1, chromodomain-hel 57.6 6.8 0.00023 34.6 3.2 52 385-436 47-101 (115)
57 3c65_A Uvrabc system protein C 57.0 2.3 7.7E-05 41.9 0.0 24 218-241 176-199 (226)
58 3v32_B Ribonuclease ZC3H12A; r 55.8 67 0.0023 30.4 10.1 44 25-76 25-68 (185)
59 2b2y_A CHD-1, chromodomain-hel 47.7 14 0.00047 35.2 3.8 50 387-436 49-101 (187)
60 3v33_A Ribonuclease ZC3H12A; r 45.5 95 0.0032 30.3 9.5 44 25-76 25-68 (223)
61 4gfj_A Topoisomerase V; helix- 42.7 15 0.00051 39.3 3.5 21 219-239 472-492 (685)
62 2duy_A Competence protein come 39.9 14 0.00046 29.3 2.1 17 219-235 31-47 (75)
63 3vdp_A Recombination protein R 34.8 30 0.001 33.5 4.0 16 219-234 30-45 (212)
64 1vdd_A Recombination protein R 32.2 35 0.0012 33.4 4.0 16 219-234 16-31 (228)
65 2owo_A DNA ligase; protein-DNA 26.1 37 0.0012 38.5 3.3 21 219-239 516-536 (671)
66 2ztd_A Holliday junction ATP-d 25.7 32 0.0011 33.3 2.5 21 217-237 125-145 (212)
67 1e0b_A SWI6 protein; chromatin 25.2 64 0.0022 25.6 3.7 48 383-433 13-61 (68)
68 2h1e_A Chromo domain protein 1 24.0 45 0.0015 31.3 3.0 40 395-435 46-87 (177)
69 1s5l_U Photosystem II 12 kDa e 24.0 39 0.0013 30.5 2.4 16 219-234 67-82 (134)
70 3sgi_A DNA ligase; HET: DNA AM 23.1 17 0.0006 40.6 0.0 24 219-242 533-556 (615)
71 2ziu_A MUS81 protein; helix-ha 22.9 54 0.0018 33.0 3.6 28 219-246 241-269 (311)
72 1vq8_Y 50S ribosomal protein L 21.9 19 0.00065 35.5 0.0 24 218-241 18-42 (241)
73 1ixr_A Holliday junction DNA h 21.6 44 0.0015 31.7 2.5 21 216-236 108-128 (191)
74 2e62_A Protein AT5G25060; CWF2 21.4 65 0.0022 25.2 2.9 28 555-582 5-32 (61)
75 3arc_U Photosystem II 12 kDa e 21.2 35 0.0012 28.9 1.5 16 219-234 30-45 (97)
76 2edu_A Kinesin-like protein KI 20.9 46 0.0016 27.7 2.2 18 218-235 43-60 (98)
77 4glx_A DNA ligase; inhibitor, 20.7 60 0.002 36.1 3.7 14 124-137 241-254 (586)
78 1dgs_A DNA ligase; AMP complex 20.5 47 0.0016 37.5 2.8 21 219-239 511-531 (667)
No 1
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=3.1e-58 Score=487.25 Aligned_cols=308 Identities=22% Similarity=0.325 Sum_probs=262.2
Q ss_pred CCccchHHHHh-hhcccc-cccccCCCEEEeeHHHHHHHhhcccCC----C---CCCCchhHHHHHHHHHHHHHHcCCEE
Q 007971 1 MGVKNLWDILE-SCKKTL-PLHHLQNKRVCIDLSCWIVQLQNVNKS----Y---RPQTDKLFLRGLFHRLRALIALNCGL 71 (583)
Q Consensus 1 MGIkgL~~~L~-~~~~~v-~L~~L~gk~IaIDas~wL~~~~~a~~~----~---~g~~~~~~Lr~lf~rl~~Ll~~gI~P 71 (583)
||| |||++|+ ++.+.+ +|++|+|++|+|||++||||++++.+. . ..|.+++++++||+++.+|+.++|+|
T Consensus 11 MGv-~L~~ll~~~~~~~~~~l~~l~gk~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~P 89 (363)
T 3ory_A 11 MGV-DLKDIIPGEAKTVIEDLRILHGKIIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKP 89 (363)
T ss_dssp CSC-CCGGGCCGGGEEECSSGGGGTTCEEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEE
T ss_pred cCc-CHHHHhhHhcccccCCHHHhCCCEEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 999 9999999 677888 999999999999999999998876542 1 12456889999999999999999999
Q ss_pred EEEEcCCCCcchhhhhHhhhhcCccccc------ccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHH
Q 007971 72 IFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145 (583)
Q Consensus 72 IFVFDG~~P~~K~~t~~~R~~~r~~a~~------~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADA 145 (583)
+|||||..|++|..++.+|+++|.++.. +.++.+++.++.+....+++.++..++++|++|||||++|||||||
T Consensus 90 v~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADa 169 (363)
T 3ory_A 90 VYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEA 169 (363)
T ss_dssp EEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred EEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccHHH
Confidence 9999999999999999999988876432 2345556666666666778899999999999999999999999999
Q ss_pred HHHHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCC-------Cce----EEEEeHHHHHHHhCCChHHHHHHHHHhCC
Q 007971 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE-------RGY----VVCYEMDDIERKLGFGRNSLITLALLLGS 214 (583)
Q Consensus 146 qcA~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~-------~~~----v~~y~~~~i~~~lgL~r~qli~laiL~G~ 214 (583)
|||+|++.|++|+|+|+|+|+|+||+++|+++++... +.+ +++|+.+.+.+.+|++++||+++|+|+||
T Consensus 170 qiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~Gs 249 (363)
T 3ory_A 170 QAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGT 249 (363)
T ss_dssp HHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCB
T ss_pred HHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999876431 112 36899999999999999999999999999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHcCCHH-HHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCC
Q 007971 215 DYSQ-GVRGLGPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETP 292 (583)
Q Consensus 215 DY~p-GvpGiG~ktA~~Li~~~g~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP 292 (583)
||+| ||||||+|||++||++||+++ +++++.. ..+ +||
T Consensus 250 Dy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--------------------------------------~~~--~~~ 289 (363)
T 3ory_A 250 DYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--------------------------------------SPI--EVD 289 (363)
T ss_dssp TTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--------------------------------------CSS--CCC
T ss_pred CCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--------------------------------------ccC--CCC
Confidence 9999 999999999999999999863 4433321 011 478
Q ss_pred cHHHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHHHHH
Q 007971 293 FSQVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 355 (583)
Q Consensus 293 ~~~Vi~~Yl~P~v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e~~l 355 (583)
+.+|.++|++|.|.+ +.++.|+ ..+..+|++|+.+.++|+.+++++.+.|+.+.++-
T Consensus 290 ~~~~~~~f~~p~v~~-~~~~~w~-----~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~ 346 (363)
T 3ory_A 290 VIAIKKYFLQPQVTD-NYRIEWH-----TPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKE 346 (363)
T ss_dssp HHHHHHHHHSCCCCS-CCCCCCC-----CCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCC-CCCCCCC-----CCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcc
Confidence 899999999999985 2333332 34778999999999999999999999999877654
No 2
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=2.3e-55 Score=461.96 Aligned_cols=310 Identities=20% Similarity=0.303 Sum_probs=261.1
Q ss_pred CccchHHHHhhh----cccccccccCCCEEEeeHHHHHHHhhcccCC------CCCCCchhHHHHHHHHHHHHHHcCCEE
Q 007971 2 GVKNLWDILESC----KKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS------YRPQTDKLFLRGLFHRLRALIALNCGL 71 (583)
Q Consensus 2 GIkgL~~~L~~~----~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~------~~g~~~~~~Lr~lf~rl~~Ll~~gI~P 71 (583)
||+|||++|++. .++++|++|+|++|+||||+||||++++.+. ...|.+++++++||+++.+|++++++|
T Consensus 1 GI~GL~~~l~~~~p~~~~~~~l~~l~gk~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~P 80 (341)
T 3q8k_A 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP 80 (341)
T ss_dssp CCTTHHHHHHHHCGGGEEEEEGGGGTTCEEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCEE
T ss_pred CchhHHHHHHHhhhhccccccHHHhCCCEEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHCCCCc
Confidence 999999999965 4789999999999999999999999987642 123567899999999999999999999
Q ss_pred EEEEcCCCCcchhhhhHhhhhcCcccc------cccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHH
Q 007971 72 IFVSDGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145 (583)
Q Consensus 72 IFVFDG~~P~~K~~t~~~R~~~r~~a~------~~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADA 145 (583)
+|||||..|++|..++.+|+++|.++. ...+..+++.++.+....++..|+..++++|++|||||++|||||||
T Consensus 81 ~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd 160 (341)
T 3q8k_A 81 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEA 160 (341)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred eEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHHH
Confidence 999999999999999999988776421 12334455666666656677899999999999999999999999999
Q ss_pred HHHHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCC--CceEEEEeHHHHHHHhCCChHHHHHHHHHhCCCCCCCCCCC
Q 007971 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223 (583)
Q Consensus 146 qcA~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~--~~~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY~pGvpGi 223 (583)
|||+|++.|.+++|+|+|+|+|+||+++|++++..+. +..+..|+.+.+.+++|++++||+++|+|+||||+||||||
T Consensus 161 ~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGi 240 (341)
T 3q8k_A 161 SCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGI 240 (341)
T ss_dssp HHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTC
T ss_pred HHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCc
Confidence 9999999999999999999999999999999875432 24678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCHH-HHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcHHHHHHhcC
Q 007971 224 GPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 302 (583)
Q Consensus 224 G~ktA~~Li~~~g~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~~Vi~~Yl~ 302 (583)
|+|||++||++||+++ ++++++. .+..++.+||+.++.+.|++
T Consensus 241 G~KtA~kll~~~gsle~i~~~~~~------------------------------------~k~~~~~~~~~~~~r~l~l~ 284 (341)
T 3q8k_A 241 GPKRAVDLIQKHKSIEEIVRRLDP------------------------------------NKYPVPENWLHKEAHQLFLE 284 (341)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHSCT------------------------------------TTSCCCTTCCHHHHHHHHHS
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHh------------------------------------cCCCCCcccchHHHHHHhCC
Confidence 9999999999999974 6665531 01235567889999999999
Q ss_pred CccCCCCh-HHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHH
Q 007971 303 PKCYSADS-EAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352 (583)
Q Consensus 303 P~v~~~~~-~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e 352 (583)
|.|..+.. ++.| .+++..+|++|+.+.++|+++++++.+-++.+-
T Consensus 285 ~~V~~~~~~~l~~-----~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~ 330 (341)
T 3q8k_A 285 PEVLDPESVELKW-----SEPNEEELIKFMCGEKQFSEERIRSGVKRLSKS 330 (341)
T ss_dssp CCCCCTTTSCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccCC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99975422 2222 246889999999999999998887777665543
No 3
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=1.3e-55 Score=463.77 Aligned_cols=300 Identities=22% Similarity=0.335 Sum_probs=250.1
Q ss_pred CCccchHHHHhhhcccccccccCCCEEEeeHHHHHHHhhcccCC-------CCCCCchhHHHHHHHHHHHHHHcCCEEEE
Q 007971 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-------YRPQTDKLFLRGLFHRLRALIALNCGLIF 73 (583)
Q Consensus 1 MGIkgL~~~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~-------~~g~~~~~~Lr~lf~rl~~Ll~~gI~PIF 73 (583)
||| |||+|| +.++++|++|+|++|+|||++||||++++.+. ...|.+++++.++|+++.+|+++||+|||
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~g~~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~ 77 (340)
T 1b43_A 1 MGV-PIGEII--PRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVY 77 (340)
T ss_dssp -CC-CCGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCC-ChHHHh--cccccCHHHhCCCEEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHhCCCEEEE
Confidence 999 999999 77889999999999999999999999887641 11245678999999999999999999999
Q ss_pred EEcCCCCcchhhhhHhhhhcCcccc------cccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHHHH
Q 007971 74 VSDGSIPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 147 (583)
Q Consensus 74 VFDG~~P~~K~~t~~~R~~~r~~a~------~~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADAqc 147 (583)
||||..|++|..++.+|+.+|.++. .+.++.+.+..+.+.....+..++..++++|+++||||++|||||||||
T Consensus 78 VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~i 157 (340)
T 1b43_A 78 VFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQA 157 (340)
T ss_dssp EECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred EecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHHHHH
Confidence 9999999999999988888776532 1233344445555555566788999999999999999999999999999
Q ss_pred HHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCCCc-----------eEEEEeHHHHHHHhCCChHHHHHHHHHhCCCC
Q 007971 148 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216 (583)
Q Consensus 148 A~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~~~-----------~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY 216 (583)
|+|++.|++|+|+|+|+|+|+||+++|++++.....+ .+++|+.+.+.+.+|++++||+++|+|+||||
T Consensus 158 A~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy 237 (340)
T 1b43_A 158 AYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDY 237 (340)
T ss_dssp HHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTT
T ss_pred HHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999988653211 34679999999999999999999999999999
Q ss_pred CC-CCCCCCHHHHHHHHHHcCCHH-HHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcH
Q 007971 217 SQ-GVRGLGPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFS 294 (583)
Q Consensus 217 ~p-GvpGiG~ktA~~Li~~~g~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~ 294 (583)
+| ||||||+|||++||++||+++ ++++ +.+||+.
T Consensus 238 ~p~gv~GiG~ktA~kli~~~gsle~il~~--------------------------------------------~~~~~~~ 273 (340)
T 1b43_A 238 NPGGIKGIGLKKALEIVRHSKDPLAKFQK--------------------------------------------QSDVDLY 273 (340)
T ss_dssp STTCSTTCCHHHHHHHHHTCSSGGGGTGG--------------------------------------------GCSSCHH
T ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHcC--------------------------------------------CCCccHH
Confidence 99 999999999999999999852 2221 1245677
Q ss_pred HHHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHHH
Q 007971 295 QVIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAER 353 (583)
Q Consensus 295 ~Vi~~Yl~P~v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e~ 353 (583)
.+.++|++|.|.. ..++.| .+++...|++|+.+.++|+.+++++.+.|+.+.+
T Consensus 274 ~~~~~~~~~~v~d-~~~~~~-----~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~ 326 (340)
T 1b43_A 274 AIKEFFLNPPVTD-NYNLVW-----RDPDEEGILKFLCDEHDFSEERVKNGLERLKKAI 326 (340)
T ss_dssp HHHHHHHSCCCCC-CCCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCC-cccCCC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Confidence 8999999998875 222221 2457889999999999999999999988876554
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.2e-53 Score=444.48 Aligned_cols=297 Identities=21% Similarity=0.313 Sum_probs=250.4
Q ss_pred CCccchHHHHhhhcccccccccCCCEEEeeHHHHHHHhhcccCC-----C--CCCCchhHHHHHHHHHHHHHHcCCEEEE
Q 007971 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-----Y--RPQTDKLFLRGLFHRLRALIALNCGLIF 73 (583)
Q Consensus 1 MGIkgL~~~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~-----~--~g~~~~~~Lr~lf~rl~~Ll~~gI~PIF 73 (583)
||| |||++| +.++++|++|+|++|+|||++|+||++++.+. . ..|.++++++++++++.+|+.++|+|||
T Consensus 1 MGI-gL~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~ 77 (326)
T 1a76_A 1 MGV-QFGDFI--PKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIW 77 (326)
T ss_dssp -CC-CCGGGS--CCEECCSGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCC-ChHHHH--hhcccCHHHhCCCEEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeEEE
Confidence 999 999999 78889999999999999999999999887641 1 1245678999999999999889999999
Q ss_pred EEcCCCCcchhhhhHhhhhcCccccc------ccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHHHH
Q 007971 74 VSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 147 (583)
Q Consensus 74 VFDG~~P~~K~~t~~~R~~~r~~a~~------~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADAqc 147 (583)
||||..|++|..++.+|+++|.++.. +.++.+++.++.+....++..++..++++|+++||||++|||||||||
T Consensus 78 vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~i 157 (326)
T 1a76_A 78 VFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQA 157 (326)
T ss_dssp EECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHH
T ss_pred EEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHHH
Confidence 99999999999999999988865432 234444555555555567788999999999999999999999999999
Q ss_pred HHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCCCceEEEEeHHHHHHHhCCChHHHHHHHHHhCCCCCC-CCCCCCHH
Q 007971 148 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGLGPE 226 (583)
Q Consensus 148 A~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~~~~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY~p-GvpGiG~k 226 (583)
|+|++.|++++|+|+|+|+|+||+++|++++... +..+++|+.+.+.+.+|++++||+++|+|+||||+| ||||||+|
T Consensus 158 a~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~-~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~k 236 (326)
T 1a76_A 158 SYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTT-KEMPELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFK 236 (326)
T ss_dssp HHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSC-SSCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHH
T ss_pred HHHHHCCCEEEEecCCcccceecCCEEEEeecCC-CCceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHH
Confidence 9999999999999999999999999999987653 357889999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHcCCHH-HH-HHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcHHHHHHhcCCc
Q 007971 227 SACQIVKSVGDNV-VL-QRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSNPK 304 (583)
Q Consensus 227 tA~~Li~~~g~~~-il-~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~~Vi~~Yl~P~ 304 (583)
||++||++ |+++ ++ ++++. +..+.++|++|.
T Consensus 237 tA~kli~~-gsle~i~~~~~~~----------------------------------------------~~~~~~~~l~~~ 269 (326)
T 1a76_A 237 RAYELVRS-GVAKDVLKKEVEY----------------------------------------------YDEIKRIFKEPK 269 (326)
T ss_dssp HHHHHHHH-TCHHHHHHHHSTT----------------------------------------------HHHHHHHHHSCC
T ss_pred HHHHHHHc-CCHHHHHHHHHhH----------------------------------------------HHHHHHHHhCCC
Confidence 99999999 9974 55 54321 134557888888
Q ss_pred cCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHHHH
Q 007971 305 CYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERD 354 (583)
Q Consensus 305 v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e~~ 354 (583)
+.. +.++.| .+++...|++|+.+.++|+.+++++.+.|+.+.++
T Consensus 270 l~~-~~~~~~-----~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~ 313 (326)
T 1a76_A 270 VTD-NYSLSL-----KLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIA 313 (326)
T ss_dssp CCC-CCCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCC-CccCCC-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 765 332221 24578899999989999999999999999886654
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=1.8e-52 Score=439.29 Aligned_cols=300 Identities=20% Similarity=0.331 Sum_probs=242.6
Q ss_pred CCccchHHHHhhhcccccccccCCCEEEeeHHHHHHHhhcccCC-----C--CCCCchhHHHHHHHHHHHHHHcCCEEEE
Q 007971 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-----Y--RPQTDKLFLRGLFHRLRALIALNCGLIF 73 (583)
Q Consensus 1 MGIkgL~~~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~-----~--~g~~~~~~Lr~lf~rl~~Ll~~gI~PIF 73 (583)
||| |||++| +.++++|++|+|++|+|||++|+||++++.+. . ..|.+++++++|+.++.+|++++|+|||
T Consensus 1 MGI-~L~~~l--~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~ 77 (336)
T 1rxw_A 1 MGA-DIGDLF--EREEVELEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRPVF 77 (336)
T ss_dssp --C-TGGGGC--CCEECCGGGGTTCEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCC-ChHHHH--hcceeCHHHhCCCEEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEEEE
Confidence 999 999999 67889999999999999999999999987642 1 1245678999999999999999999999
Q ss_pred EEcCCCCcchhhhhHhhhhcCcccccc------cccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHHHH
Q 007971 74 VSDGSIPAIKLSTYRRRLNSGSEVTQD------DKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQC 147 (583)
Q Consensus 74 VFDG~~P~~K~~t~~~R~~~r~~a~~~------~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADAqc 147 (583)
||||..|++|..++.+|+++|.++... .++ +++..+.+....+++.++..++++|+++||||++|||||||||
T Consensus 78 vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~l 156 (336)
T 1rxw_A 78 VFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQA 156 (336)
T ss_dssp EECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHH
T ss_pred EEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHH
Confidence 999999999999999999888654321 111 2223333333445677999999999999999999999999999
Q ss_pred HHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCCCc-----------eEEEEeHHHHHHHhCCChHHHHHHHHHhCCCC
Q 007971 148 ALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDY 216 (583)
Q Consensus 148 A~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~~~-----------~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY 216 (583)
|+|++.|++++|+|+|+|+|+||+++|++++...... .+++|+.+.+.+++|++++||+++|+|+||||
T Consensus 157 A~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ 236 (336)
T 1rxw_A 157 AYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDY 236 (336)
T ss_dssp HHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTT
T ss_pred HHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999987643211 45689999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCHH-HHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcHH
Q 007971 217 SQGVRGLGPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQ 295 (583)
Q Consensus 217 ~pGvpGiG~ktA~~Li~~~g~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~~ 295 (583)
+|||||||+|||++||++||+++ ++++++.. + . ...+
T Consensus 237 ipGv~GiG~KtA~kLl~~~gsle~i~~~~~~~---l-----------------------------~----------~~~~ 274 (336)
T 1rxw_A 237 NEGVKGVGVKKALNYIKTYGDIFRALKALKVN---I-----------------------------D----------HVEE 274 (336)
T ss_dssp BCCCTTCCHHHHHHHHHHHSSHHHHHHHHTC----------------------------------------------CHH
T ss_pred CCCCCCcCHHHHHHHHHHcCCHHHHHHhCCCC---C-----------------------------c----------cHHH
Confidence 99999999999999999999974 77765410 0 0 0137
Q ss_pred HHHHhcCCccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHH
Q 007971 296 VIDAYSNPKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAE 352 (583)
Q Consensus 296 Vi~~Yl~P~v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e 352 (583)
+...|++|.++. ..++.| .+++...|++|+.+.++|+.++++..+-++.+.
T Consensus 275 l~~i~~~~~v~~-~~~~~~-----~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~ 325 (336)
T 1rxw_A 275 IRNFFLNPPVTD-DYRIEF-----REPDFEKAIEFLCEEHDFSRERVEKALEKLKAL 325 (336)
T ss_dssp HHHHHHSCCCCC-CCCCCC-----CCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC-
T ss_pred HHHHHhCCCCCC-cccccC-----CCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhh
Confidence 888899988873 222222 245788999999999999998888777776643
No 6
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=1.4e-52 Score=446.79 Aligned_cols=310 Identities=20% Similarity=0.307 Sum_probs=241.1
Q ss_pred CccchHHHHhhhc----ccccccccCCCEEEeeHHHHHHHhhcccCCC------CCCCchhHHHHHHHHHHHHHHcCCEE
Q 007971 2 GVKNLWDILESCK----KTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY------RPQTDKLFLRGLFHRLRALIALNCGL 71 (583)
Q Consensus 2 GIkgL~~~L~~~~----~~v~L~~L~gk~IaIDas~wL~~~~~a~~~~------~g~~~~~~Lr~lf~rl~~Ll~~gI~P 71 (583)
||+|||+||++.. +.++|++|+|++|+|||++|||+++++.+.. ..|.+++++++||+++.+|+++||+|
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~l~~l~g~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P 80 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKP 80 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEECGGGGTTCCEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCE
T ss_pred CcChhHHHHHHhccccceeeCHHHcCCCEEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCe
Confidence 9999999999754 6899999999999999999999999876521 13456789999999999999999999
Q ss_pred EEEEcCCCCcchhhhhHhhhhcCccccc------ccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHH
Q 007971 72 IFVSDGSIPAIKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEA 145 (583)
Q Consensus 72 IFVFDG~~P~~K~~t~~~R~~~r~~a~~------~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADA 145 (583)
+|||||..|++|..++.+|+++|.++.. +.++.+++.++.+....++..++..++++|++|||||++|||||||
T Consensus 81 ~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEADd 160 (379)
T 1ul1_X 81 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEA 160 (379)
T ss_dssp EEEECCSCCSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHHH
T ss_pred EEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCcHHH
Confidence 9999999999999999888887765421 2233444445554445556778899999999999999999999999
Q ss_pred HHHHHHHcCCeeEEecCCCcEEeecCcEEEEEcccCC--CceEEEEeHHHHHHHhCCChHHHHHHHHHhCCCCCCCCCCC
Q 007971 146 QCALLNLESLCDGCFSSDSDIFLFGARTVYRDIWLGE--RGYVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQGVRGL 223 (583)
Q Consensus 146 qcA~L~~~g~vd~ViS~DsD~llfG~~~V~r~~~~~~--~~~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY~pGvpGi 223 (583)
|||+|++.|.+++|+|+|+|+|+||++.|++++.... ...+.+|+.+.+.+.+|++++||+++|+|+||||++|||||
T Consensus 161 ~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpGI 240 (379)
T 1ul1_X 161 SCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGI 240 (379)
T ss_dssp HHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTTC
T ss_pred HHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCCCCc
Confidence 9999999999999999999999999999999875432 24588999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCHH-HHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcHHHHHHhcC
Q 007971 224 GPESACQIVKSVGDNV-VLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 302 (583)
Q Consensus 224 G~ktA~~Li~~~g~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~~Vi~~Yl~ 302 (583)
|+|||++||++||+++ ++++++.. +...+..|++..+.+.|++
T Consensus 241 G~KtA~kLl~~~gsle~i~~~~~~~------------------------------------k~~~~~~~~~~~ar~l~l~ 284 (379)
T 1ul1_X 241 GPKRAVDLIQKHKSIEEIVRRLDPN------------------------------------KYPVPENWLHKEAHQLFLE 284 (379)
T ss_dssp CHHHHHHHHHHSSSHHHHHTTCCCT------------------------------------TSCCCSSCCHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHhh------------------------------------cccCCCcCCHHHHHHHhcC
Confidence 9999999999999974 66554321 0124556788889999999
Q ss_pred CccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHH
Q 007971 303 PKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIA 351 (583)
Q Consensus 303 P~v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~ 351 (583)
|.|..+.. . . +...+++...|++|+.+.++|+.+++++.+-++.+
T Consensus 285 ~~v~~~~~--~-~-l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~ 329 (379)
T 1ul1_X 285 PEVLDPES--V-E-LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSK 329 (379)
T ss_dssp CCCCCGGG--C-C-CCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred CeeCCCCC--c-c-CCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99975321 0 1 11124577899999999999999988777666553
No 7
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-51 Score=434.87 Aligned_cols=304 Identities=23% Similarity=0.326 Sum_probs=217.2
Q ss_pred HHhhhcccccccccCCCEEEeeHHHHHHHhhcccCC----C---CCCCchhHHHHHHHHHHHHHHcCCEEEEEEcCCCCc
Q 007971 9 ILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS----Y---RPQTDKLFLRGLFHRLRALIALNCGLIFVSDGSIPA 81 (583)
Q Consensus 9 ~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~----~---~g~~~~~~Lr~lf~rl~~Ll~~gI~PIFVFDG~~P~ 81 (583)
++.++.++++|+.|+|++|+|||++||||++++.+. . ..|.+++++++|++++.+|+++||+|||||||..|+
T Consensus 3 ~~~~~~~~~~l~~l~~~~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~ 82 (346)
T 2izo_A 3 LVKDVKRELSFSELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPE 82 (346)
T ss_dssp CCCCCCEECCHHHHTTEEEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC----
T ss_pred cCCCCcccCCHHHhCCCEEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 456778899999999999999999999999988752 1 124567899999999999999999999999999999
Q ss_pred chhhhhHhhhhcCccccc------ccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHHHHHHHHHcCC
Q 007971 82 IKLSTYRRRLNSGSEVTQ------DDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNLESL 155 (583)
Q Consensus 82 ~K~~t~~~R~~~r~~a~~------~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADAqcA~L~~~g~ 155 (583)
+|..++.+|+++|.++.. +.++.+++.++.+....++..++..++++|++|||||++||||||||||+|++.|+
T Consensus 83 ~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~ 162 (346)
T 2izo_A 83 QKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGL 162 (346)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTS
T ss_pred hhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCC
Confidence 999999999988875432 23444455555555556677899999999999999999999999999999999999
Q ss_pred eeEEecCCCcEEeecCcEEEEEcccCCCc-----------eEEEEeHHHHHHHhCCChHHHHHHHHHhCCCCCC-CCCCC
Q 007971 156 CDGCFSSDSDIFLFGARTVYRDIWLGERG-----------YVVCYEMDDIERKLGFGRNSLITLALLLGSDYSQ-GVRGL 223 (583)
Q Consensus 156 vd~ViS~DsD~llfG~~~V~r~~~~~~~~-----------~v~~y~~~~i~~~lgL~r~qli~laiL~G~DY~p-GvpGi 223 (583)
+|+|+|+|+|+|+||+++|++++.....+ .+++|+.+.+.+.+|++++||+++|+|+||||+| |||||
T Consensus 163 ~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GI 242 (346)
T 2izo_A 163 SWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGI 242 (346)
T ss_dssp SSEEECSSSHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTC
T ss_pred eEEEECCCCCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCc
Confidence 99999999999999999999987542111 3578999999999999999999999999999999 99999
Q ss_pred CHHHHHHHHHHcCCH-HHHHHHHhcChhHHHHhhhhcccCcccccCCccccccccccccCCCCCCCCCCCcHHHHHHhcC
Q 007971 224 GPESACQIVKSVGDN-VVLQRIASEGLSFVKRAKNSKKEGWSFKCNNKEESLNQEINVNGTDHSLQRETPFSQVIDAYSN 302 (583)
Q Consensus 224 G~ktA~~Li~~~g~~-~il~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~e~~~~~~~~~~~~~fP~~~Vi~~Yl~ 302 (583)
|+|||++||++||++ +++++++.. + ++..|++.++...|++
T Consensus 243 G~KtA~kLi~~~gsle~i~~~~~~~------k--------------------------------~~~~~~~~~l~~i~~~ 284 (346)
T 2izo_A 243 GPERALKIIKKYGKIEKAMEYGEIS------K--------------------------------KDINFNIDEIRGLFLN 284 (346)
T ss_dssp CHHHHHHHHHHSSCC-------------------------------------------------------CTTHHHHHHS
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHhc------c--------------------------------CCCCccHHHHHHHhhC
Confidence 999999999999996 477766531 0 1123446889999999
Q ss_pred CccCCCChHHHHHHhhhcccChHHHHHHHHHhcCCCcccccchhhhhHHHHHH
Q 007971 303 PKCYSADSEAVHRVLAQHLFQHARLHQVCAQFFQWPPEKTDEYILPKIAERDL 355 (583)
Q Consensus 303 P~v~~~~~~~~~~~~~~~~~~~~~L~~f~~~~f~W~~~~~~e~llP~l~e~~l 355 (583)
|.|..+..++.| .+++...|++|+.+.++|+.+++...+-++.+.+..
T Consensus 285 ~~v~~~~~~l~~-----~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~ 332 (346)
T 2izo_A 285 PQVVKPEEALDL-----NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKE 332 (346)
T ss_dssp CCCCCCC-CCCC-----CCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCcc-----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Confidence 998754333222 245788999999999999999999999988866543
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=6.9e-51 Score=429.58 Aligned_cols=244 Identities=20% Similarity=0.309 Sum_probs=200.2
Q ss_pred CCccchHHHHhhhcccccccccCCCEEEeeHHHHHHHhhcccCC-CCCCCchhHHHHHHHHHHH-HHHcCCEEEEEEcCC
Q 007971 1 MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKS-YRPQTDKLFLRGLFHRLRA-LIALNCGLIFVSDGS 78 (583)
Q Consensus 1 MGIkgL~~~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~-~~g~~~~~~Lr~lf~rl~~-Ll~~gI~PIFVFDG~ 78 (583)
|||+|||+||+++.+++++++|+|++|||||++|||+++++... ..+|.++.++.++|++..+ |+++||+|||||||.
T Consensus 1 MGI~GL~~~L~~~~~~~~l~~l~Gk~vaIDas~wL~~~~~~~~~~l~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~ 80 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGC 80 (352)
T ss_dssp -CCTTHHHHTTTSEEEEEGGGGTTSEEEEETHHHHHHHHHHTHHHHHTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCcchHHHHHHhhCCcCCHHHhCCcEEEEecHHHHHHhhhccchhhcCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 99999999999999999999999999999999999998765421 1234566788888777665 578999999999999
Q ss_pred CCcchhhhhHhhhhcCcccc------cccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcccHHHHHHHHHH
Q 007971 79 IPAIKLSTYRRRLNSGSEVT------QDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVEEAEAQCALLNL 152 (583)
Q Consensus 79 ~P~~K~~t~~~R~~~r~~a~------~~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~EADAqcA~L~~ 152 (583)
+|+.|..+..+|+++|.++. .+.++.+++.++.+....+++.++..++++|+++||||++||||||||||+|++
T Consensus 81 ~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~ 160 (352)
T 3qe9_Y 81 TLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNK 160 (352)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHH
Confidence 98888888777766554321 123443444444444456678999999999999999999999999999999999
Q ss_pred cCCeeEEecCCCcEEeecCcEEEEEcccCCCceEEEEeHHHH--HHHhC--CChHHHHHHHHHhCCCCCCCCCCCCHHHH
Q 007971 153 ESLCDGCFSSDSDIFLFGARTVYRDIWLGERGYVVCYEMDDI--ERKLG--FGRNSLITLALLLGSDYSQGVRGLGPESA 228 (583)
Q Consensus 153 ~g~vd~ViS~DsD~llfG~~~V~r~~~~~~~~~v~~y~~~~i--~~~lg--L~r~qli~laiL~G~DY~pGvpGiG~ktA 228 (583)
.|++|+|+|+|+|+|+||+++|++++... +.. ..|+.+.+ .+++| ++++||+++|+|+||||+|||||||+|||
T Consensus 161 ~g~~~~I~S~D~Dll~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA 238 (352)
T 3qe9_Y 161 AGIVQAIITEDSALLAFGCKKVILKMDQF-GNG-LEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKA 238 (352)
T ss_dssp TTSCSEEECSCGGGGGGTCSEEEESCCTT-SEE-EEEEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHH
T ss_pred CCCeEEEEeCCcCcccccCCeEEEeccCC-CCc-EEEeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHH
Confidence 99999999999999999999999877542 233 34777665 57888 99999999999999999999999999999
Q ss_pred HHHHHHc--CCH-HHHHHHHh
Q 007971 229 CQIVKSV--GDN-VVLQRIAS 246 (583)
Q Consensus 229 ~~Li~~~--g~~-~il~~~~~ 246 (583)
++||++| |++ .+|+++..
T Consensus 239 ~kli~~~~~~~l~~il~~~~~ 259 (352)
T 3qe9_Y 239 CKVLRLANNPDIVKVIKKIGH 259 (352)
T ss_dssp HHHHHHCCCSCHHHHHTTHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHh
Confidence 9999999 565 47776653
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=8.3e-35 Score=298.86 Aligned_cols=220 Identities=14% Similarity=0.147 Sum_probs=167.8
Q ss_pred cchHHHHhhhcccccccccCCCEEEeeHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHHHHHc--CCEEEEEEcCCCCc
Q 007971 4 KNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIAL--NCGLIFVSDGSIPA 81 (583)
Q Consensus 4 kgL~~~L~~~~~~v~L~~L~gk~IaIDas~wL~~~~~a~~~~~g~~~~~~Lr~lf~rl~~Ll~~--gI~PIFVFDG~~P~ 81 (583)
+||-++|. .+..++.+ .++.++|||++|+||+++.. .|. + ++++|++++.+|++. +-++++||||..|.
T Consensus 2 ~~~~~~~~--~~~~~~~~-~~~lllIDg~~llyRa~~~~---~G~-p--av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~t 72 (290)
T 1exn_A 2 KSWGKFIE--EEEAEMAS-RRNLMIVDGTNLGFRFKHNN---SKK-P--FASSYVSTIQSLAKSYSARTTIVLGDKGKSV 72 (290)
T ss_dssp --------------------CEEEEEEHHHHHHHHHHHC---SSS-C--CHHHHHHHHHHHHHHTTEEEEEEECCBSCCH
T ss_pred cchHHHhh--hccccccc-CCCEEEEECcHHHHHHHhCC---CCc-h--HHHHHHHHHHHHHHHcCCCeEEEEEcCCCch
Confidence 56777774 34456666 78899999999999998732 232 3 899999999999885 34569999998889
Q ss_pred chhhhhHhhhhcCcccccccccHHHHHHhhhccchhHHHH-HHHHHHHHHH--hCCCeeeCcc-cHHHHHHHHHHc----
Q 007971 82 IKLSTYRRRLNSGSEVTQDDKNLDKMSSLRRNMGSEFSCM-IKEAKALGLS--LGVPCLEGVE-EAEAQCALLNLE---- 153 (583)
Q Consensus 82 ~K~~t~~~R~~~r~~a~~~~~~~~~a~k~~R~~~~~~~~~-i~~~k~LL~~--~GIp~i~AP~-EADAqcA~L~~~---- 153 (583)
+|+..+..|+++|.+...+. .. ....+..+ +..++++|+. ||||++.+|+ |||++||+|++.
T Consensus 73 fR~~~~~~YKa~R~~~p~~~--------~~--~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~ 142 (290)
T 1exn_A 73 FRLEHLPEYKGNRDEKYAQR--------TE--EEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHL 142 (290)
T ss_dssp HHHHHCTTTTHHHHHHHHTS--------CH--HHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGG
T ss_pred hhhhCcHHHHcCCCCCCccc--------cc--cchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHC
Confidence 98888888777665421100 00 01445556 8899999999 9999999995 999999999875
Q ss_pred CCeeEEecCCCcEEeecCcEE-EEEcccCCCceEEEEeHHHHHHHhCCCh-HHHHHHHHHhC--CCCCCCCCCCCHHHHH
Q 007971 154 SLCDGCFSSDSDIFLFGARTV-YRDIWLGERGYVVCYEMDDIERKLGFGR-NSLITLALLLG--SDYSQGVRGLGPESAC 229 (583)
Q Consensus 154 g~vd~ViS~DsD~llfG~~~V-~r~~~~~~~~~v~~y~~~~i~~~lgL~r-~qli~laiL~G--~DY~pGvpGiG~ktA~ 229 (583)
|....|+|.|+|+++|+++.| +++.. .+..|+.+.+.+++|+++ +|++++++|+| |||+|||||||+|||+
T Consensus 143 G~~v~IvS~DkDl~Qlv~~~v~v~~~~-----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~ 217 (290)
T 1exn_A 143 YDHVWLISTDGDWDTLLTDKVSRFSFT-----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGY 217 (290)
T ss_dssp SSCEEEECSCGGGGGGCCSSEEEEETT-----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHH
T ss_pred CCcEEEEeCCCChhhcCCCCEEEEECC-----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHH
Confidence 777789999999999999865 34321 456899999999999999 99999999999 9999999999999999
Q ss_pred HHHHHcCCH-HHHHHHHhc
Q 007971 230 QIVKSVGDN-VVLQRIASE 247 (583)
Q Consensus 230 ~Li~~~g~~-~il~~~~~~ 247 (583)
+||++||++ +++++++..
T Consensus 218 kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 218 NIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp HHHHHHCSHHHHHHHCSCS
T ss_pred HHHHHcCCHHHHHHHHHHh
Confidence 999999998 589988764
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.97 E-value=1.2e-34 Score=334.79 Aligned_cols=211 Identities=19% Similarity=0.185 Sum_probs=183.0
Q ss_pred ccccccccCCCEEEeeHHHHHHHhhcccCCC--CCCCchhHHHHHHHHHHHHHHc-CCEEEEEEcCCCCcchhhhhHhhh
Q 007971 15 KTLPLHHLQNKRVCIDLSCWIVQLQNVNKSY--RPQTDKLFLRGLFHRLRALIAL-NCGLIFVSDGSIPAIKLSTYRRRL 91 (583)
Q Consensus 15 ~~v~L~~L~gk~IaIDas~wL~~~~~a~~~~--~g~~~~~~Lr~lf~rl~~Ll~~-gI~PIFVFDG~~P~~K~~t~~~R~ 91 (583)
-++||++++|++++|||++|+||++++.+.. ..|.+++++.+|++++.+|++. +++|+|||||..|++|...+..|+
T Consensus 3 ~~~~l~~~~~~~llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YK 82 (832)
T 1bgx_T 3 GMLPLFEPKGRVLLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYK 82 (832)
T ss_dssp CSSCCCCCCTTSCCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTT
T ss_pred CccCHHHhCCCEEEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHH
Confidence 3578999999999999999999999987522 2355678999999999998875 699999999998999999999988
Q ss_pred hcCcccccccccHHHHHHhhhccchhHHHHHHHHHHHHHHhCCCeeeCcc-cHHHHHHHHHH----cCCeeEEecCCCcE
Q 007971 92 NSGSEVTQDDKNLDKMSSLRRNMGSEFSCMIKEAKALGLSLGVPCLEGVE-EAEAQCALLNL----ESLCDGCFSSDSDI 166 (583)
Q Consensus 92 ~~r~~a~~~~~~~~~a~k~~R~~~~~~~~~i~~~k~LL~~~GIp~i~AP~-EADAqcA~L~~----~g~vd~ViS~DsD~ 166 (583)
+.|.+. +..+..++..++++|+.||||++++|+ ||||+||+|++ .|..++|+|+|+|+
T Consensus 83 a~R~~~-----------------pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDl 145 (832)
T 1bgx_T 83 AGRAPT-----------------PEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDL 145 (832)
T ss_dssp SCCCCC-----------------CTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTC
T ss_pred hccccC-----------------hHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCh
Confidence 887653 233445677899999999999999995 99999999987 68999999999999
Q ss_pred EeecCcEEEEEcccCCCceEEEEeHHHHHHHhCCChHHHHHHHHHhC--CCCCCCCCCCCHHHHHHHHHHcCCH-HHHHH
Q 007971 167 FLFGARTVYRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG--SDYSQGVRGLGPESACQIVKSVGDN-VVLQR 243 (583)
Q Consensus 167 llfG~~~V~r~~~~~~~~~v~~y~~~~i~~~lgL~r~qli~laiL~G--~DY~pGvpGiG~ktA~~Li~~~g~~-~il~~ 243 (583)
++|+++.|++... .| ..|+.+.+.+++|++++||+++|+|+| |||+|||||||+|||++||++||++ +++++
T Consensus 146 lql~~~~v~~~~~--~g---~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~ 220 (832)
T 1bgx_T 146 YQLLSDRIHVLHP--EG---YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKN 220 (832)
T ss_dssp CTTCCTTBCBCCS--SS---CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSS
T ss_pred hhcCcCCEEEEeC--CC---cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHH
Confidence 9999998876544 22 578999999999999999999999999 9999999999999999999999997 47777
Q ss_pred HHhc
Q 007971 244 IASE 247 (583)
Q Consensus 244 ~~~~ 247 (583)
++..
T Consensus 221 ~~~~ 224 (832)
T 1bgx_T 221 LDRL 224 (832)
T ss_dssp CCCC
T ss_pred HHHh
Confidence 7643
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.80 E-value=5.2e-20 Score=188.63 Aligned_cols=183 Identities=14% Similarity=0.016 Sum_probs=132.5
Q ss_pred CCCEEEeeHHHHHHHhhcccCCCCCCCchhHHHH-HHHHHHHHHHc-----CCEEEEEEcCC-CCcchhhhhHhhhhcCc
Q 007971 23 QNKRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRG-LFHRLRALIAL-----NCGLIFVSDGS-IPAIKLSTYRRRLNSGS 95 (583)
Q Consensus 23 ~gk~IaIDas~wL~~~~~a~~~~~g~~~~~~Lr~-lf~rl~~Ll~~-----gI~PIFVFDG~-~P~~K~~t~~~R~~~r~ 95 (583)
+.+.+.||||+.+|+++...-....+.+++.+++ |+..|.++++. +-+.+++||+. .+.+++..+..+++.|.
T Consensus 12 ~~~llLIDgssl~~ra~~~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~ 91 (305)
T 3h7i_A 12 KEGICLIDFSQIALSTALVNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRG 91 (305)
T ss_dssp SCCEEEEEHHHHHHHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHH
T ss_pred CCCEEEEeccHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCC
Confidence 3468999999999997543212222456778877 77777776643 56789999986 58888888877777665
Q ss_pred ccccccccHHHHHHhhhccchhHHHHH-HHHHHHHHHhCCCeeeCc-ccHHHHHHHHHH----cCCeeEEecCCCcEEee
Q 007971 96 EVTQDDKNLDKMSSLRRNMGSEFSCMI-KEAKALGLSLGVPCLEGV-EEAEAQCALLNL----ESLCDGCFSSDSDIFLF 169 (583)
Q Consensus 96 ~a~~~~~~~~~a~k~~R~~~~~~~~~i-~~~k~LL~~~GIp~i~AP-~EADAqcA~L~~----~g~vd~ViS~DsD~llf 169 (583)
+... .+... -..+..++ ..++++|++||||++..| +|||+.||.|++ .|.-..|+|.|.|++++
T Consensus 92 ~~Pe---------eL~~Q-~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QL 161 (305)
T 3h7i_A 92 KARE---------ESTWD-WEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQL 161 (305)
T ss_dssp HHHH---------HCSSC-HHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGG
T ss_pred CCCH---------HHHHH-HHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCcccc
Confidence 3211 00000 01122334 678999999999999998 599999999975 46667899999999999
Q ss_pred cC-cEE-EEEcccCCCceEEEEeHHHHHHHhCCChHHHHHHHHHhC--CCCCCCCCCCCHH
Q 007971 170 GA-RTV-YRDIWLGERGYVVCYEMDDIERKLGFGRNSLITLALLLG--SDYSQGVRGLGPE 226 (583)
Q Consensus 170 G~-~~V-~r~~~~~~~~~v~~y~~~~i~~~lgL~r~qli~laiL~G--~DY~pGvpGiG~k 226 (583)
.. +.| +.+... .+.+.+++|+ ++|++++.+|+| +|++|||||||+.
T Consensus 162 v~~~~V~~~~~~~----------~~~V~ek~Gv-P~q~iD~~aL~GDsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 162 HKYPNVKQWSPMH----------KKWVKIKSGS-AEIDCMTKILKGDKKDNVASVKVRSDF 211 (305)
T ss_dssp GGSSSEEEEETTT----------TEEECSSCSC-HHHHHHHHHHHCBGGGTBCCTTSCTTH
T ss_pred ccCCCeEEEecCC----------HHHHHHHhCC-HHHHhhHHheeCccccCCCCCCcCCcc
Confidence 86 333 333221 1234568998 999999999999 8999999999985
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=98.44 E-value=1.1e-06 Score=104.42 Aligned_cols=225 Identities=16% Similarity=0.233 Sum_probs=124.7
Q ss_pred CCccchHHHHhh---hccccccc--ccCCCEEEeeHHHHHHHhhcccCCCCC--CCchhHHHHHHHHHHHHHHc--CCE-
Q 007971 1 MGVKNLWDILES---CKKTLPLH--HLQNKRVCIDLSCWIVQLQNVNKSYRP--QTDKLFLRGLFHRLRALIAL--NCG- 70 (583)
Q Consensus 1 MGIkgL~~~L~~---~~~~v~L~--~L~gk~IaIDas~wL~~~~~a~~~~~g--~~~~~~Lr~lf~rl~~Ll~~--gI~- 70 (583)
|||++|+.||.. +.....-. ...=--+-||.++.+|.+......... .......+.+|..+.+|... +=+
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~~~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkl 80 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRL 80 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETTTSCCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSE
T ss_pred CChhHHHHHHHHHCCchhhhccccCCCcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheecccee
Confidence 999999999983 22111000 011246899999999987654321110 11234455666666666653 444
Q ss_pred EEEEEcCCCCcchhhhhHhhhhcCc-cccc------ccccHHHHHHhhhc---cchhHHHHH-HHHHHHHH--------H
Q 007971 71 LIFVSDGSIPAIKLSTYRRRLNSGS-EVTQ------DDKNLDKMSSLRRN---MGSEFSCMI-KEAKALGL--------S 131 (583)
Q Consensus 71 PIFVFDG~~P~~K~~t~~~R~~~r~-~a~~------~~~~~~~a~k~~R~---~~~~~~~~i-~~~k~LL~--------~ 131 (583)
.++.+||.+|-.|-...+.|+-+.. ++.. ..++......+..+ .+..|...+ ..++..+. -
T Consensus 81 l~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w 160 (1140)
T 2y35_A 81 FFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLW 160 (1140)
T ss_dssp EEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred EEEEecCCCchhHHHHHHHHHhhhhhhhhhhHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccc
Confidence 4667999999877655444432111 0000 00000000111111 233332222 22222221 1
Q ss_pred hCCCeeeC----cccHHHHHHHHHHc---------CCeeEEecCCCcEEeecCc------EEEEEcc-cCC--------C
Q 007971 132 LGVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDIW-LGE--------R 183 (583)
Q Consensus 132 ~GIp~i~A----P~EADAqcA~L~~~---------g~vd~ViS~DsD~llfG~~------~V~r~~~-~~~--------~ 183 (583)
-++.+|.+ |||+|.-+-.+.+. +....|++.|+|++++|-. .++|.-. ++. .
T Consensus 161 ~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~ 240 (1140)
T 2y35_A 161 QRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEE 240 (1140)
T ss_dssp SSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGG
T ss_pred cceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccc
Confidence 36777764 79999888655431 4567999999999998732 3566532 111 1
Q ss_pred ceEEEEeHHHHHHHh------------CCC----hHHHHHHHHHhCCCCCCCCCCCCH
Q 007971 184 GYVVCYEMDDIERKL------------GFG----RNSLITLALLLGSDYSQGVRGLGP 225 (583)
Q Consensus 184 ~~v~~y~~~~i~~~l------------gL~----r~qli~laiL~G~DY~pGvpGiG~ 225 (583)
..+..++..-+++.+ .++ .+.||.+|.|+|+||+|++|++.+
T Consensus 241 ~~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I 298 (1140)
T 2y35_A 241 TRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHI 298 (1140)
T ss_dssp CEEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCT
T ss_pred cceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCcccc
Confidence 346677776555432 123 467889999999999999999863
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=98.12 E-value=5.9e-06 Score=97.36 Aligned_cols=225 Identities=14% Similarity=0.216 Sum_probs=124.0
Q ss_pred CCccchHHHHhhhcccc--ccccc---CCCEEEeeHHHHHHHhhcccCCCC-C-CCchhHHHHHHHHHHHHHHc--CCEE
Q 007971 1 MGVKNLWDILESCKKTL--PLHHL---QNKRVCIDLSCWIVQLQNVNKSYR-P-QTDKLFLRGLFHRLRALIAL--NCGL 71 (583)
Q Consensus 1 MGIkgL~~~L~~~~~~v--~L~~L---~gk~IaIDas~wL~~~~~a~~~~~-g-~~~~~~Lr~lf~rl~~Ll~~--gI~P 71 (583)
|||++|..||...--.+ .+..- .=--+-||.++.+|.+........ . ......+..+|..+.+|... +-+.
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~~~~~~pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkl 80 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLIDGSQIPEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQT 80 (1155)
T ss_pred CChHHHHHHHHHhCcchhhcccCCCCCcCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceE
Confidence 99999999998421111 11111 113578999999998754432110 0 11234556677777777653 3333
Q ss_pred -EEEEcCCCCcchhhhhHhhhhcCc-cccc------cccc-HHHHHHhhhc---cchhHHHHH-HHHHHHHH--------
Q 007971 72 -IFVSDGSIPAIKLSTYRRRLNSGS-EVTQ------DDKN-LDKMSSLRRN---MGSEFSCMI-KEAKALGL-------- 130 (583)
Q Consensus 72 -IFVFDG~~P~~K~~t~~~R~~~r~-~a~~------~~~~-~~~a~k~~R~---~~~~~~~~i-~~~k~LL~-------- 130 (583)
++.+||.+|-.|-...+.|+-+.. ++.. ..++ ..+...+..+ .|..|...+ ..++..+.
T Consensus 81 lyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~ 160 (1155)
T 3pie_A 81 FYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTR 160 (1155)
T ss_pred EEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCCcC
Confidence 567999999877665444432211 1100 0000 0000111122 123332222 11222221
Q ss_pred HhCCCeeeC----cccHHHHHHHHHHc---------CCeeEEecCCCcEEeecCc------EEEEEc-ccCC--------
Q 007971 131 SLGVPCLEG----VEEAEAQCALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDI-WLGE-------- 182 (583)
Q Consensus 131 ~~GIp~i~A----P~EADAqcA~L~~~---------g~vd~ViS~DsD~llfG~~------~V~r~~-~~~~-------- 182 (583)
--++.+|.+ |||+|.-|..+.+. +....|++.|+|++++|-. .++|.- .++.
T Consensus 161 w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~ 240 (1155)
T 3pie_A 161 WQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTL 240 (1155)
T ss_pred ccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCccccccccc
Confidence 125566664 79999988765542 3467999999999999853 256642 1111
Q ss_pred -CceEEEEeHHHHHHHh-------------CCC----hHHHHHHHHHhCCCCCCCCCCCCH
Q 007971 183 -RGYVVCYEMDDIERKL-------------GFG----RNSLITLALLLGSDYSQGVRGLGP 225 (583)
Q Consensus 183 -~~~v~~y~~~~i~~~l-------------gL~----r~qli~laiL~G~DY~pGvpGiG~ 225 (583)
...+.+++..-+++.| .++ -+.||.+|.|+|+||+|.+|.+.+
T Consensus 241 ~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I 301 (1155)
T 3pie_A 241 ETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301 (1155)
T ss_pred ccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCc
Confidence 1235566765554332 122 257888999999999999998853
No 14
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=98.03 E-value=1.7e-05 Score=91.12 Aligned_cols=199 Identities=16% Similarity=0.251 Sum_probs=111.3
Q ss_pred EEEeeHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHHHHHc--CCEE-EEEEcCCCCcchhhhhHhhhhcCc-cccccc
Q 007971 26 RVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIAL--NCGL-IFVSDGSIPAIKLSTYRRRLNSGS-EVTQDD 101 (583)
Q Consensus 26 ~IaIDas~wL~~~~~a~~~~~g~~~~~~Lr~lf~rl~~Ll~~--gI~P-IFVFDG~~P~~K~~t~~~R~~~r~-~a~~~~ 101 (583)
-+-||.++.||.+...............+..+|..+.+|... +=+. ++.+||.+|-.|-...+.|+-+.. ++....
T Consensus 54 nLYlDmNgIIH~c~h~~~~~~~~te~e~~~~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~ 133 (899)
T 3fqd_A 54 NLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKE 133 (899)
T ss_dssp EEEEETHHHHHHHHSCSSSCCCCSHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCcceeEEEeecCCCCchHHHHHHHHHHHhhhhhhhhH
Confidence 577899999998866432111112234456677777777653 3333 567999999877665444432211 110000
Q ss_pred ccHHH----H--------------HHhhhc---cchhHHHHHHH-HHHHHH-H-------hCCCeeeC----cccHHHHH
Q 007971 102 KNLDK----M--------------SSLRRN---MGSEFSCMIKE-AKALGL-S-------LGVPCLEG----VEEAEAQC 147 (583)
Q Consensus 102 ~~~~~----a--------------~k~~R~---~~~~~~~~i~~-~k~LL~-~-------~GIp~i~A----P~EADAqc 147 (583)
...++ . ..+..+ .|..|...+.. ++..+. . -++.+|.+ |||+|.-|
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKI 213 (899)
T 3fqd_A 134 EELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKI 213 (899)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCCCccHHHH
Confidence 00000 0 011111 12333222222 222221 1 26667774 89999998
Q ss_pred HHHHHc---------CCeeEEecCCCcEEeecCc------EEEEEcc-cCC---------------------------Cc
Q 007971 148 ALLNLE---------SLCDGCFSSDSDIFLFGAR------TVYRDIW-LGE---------------------------RG 184 (583)
Q Consensus 148 A~L~~~---------g~vd~ViS~DsD~llfG~~------~V~r~~~-~~~---------------------------~~ 184 (583)
..+.+. +....|++.|.|++++|-. .++|.-. ++. ..
T Consensus 214 m~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~~~~~k~~~~~~~~~~~~~~ 293 (899)
T 3fqd_A 214 MEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEERLGIKRLDDVSETNKVPVKK 293 (899)
T ss_dssp HHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTTTTCCBTTC----------C
T ss_pred HHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhhccccccccccccccccccC
Confidence 766542 3578999999999999843 3666421 110 02
Q ss_pred eEEEEeHHHHHH----HhCC-------C----hHHHHHHHHHhCCCCCCCCCCCC
Q 007971 185 YVVCYEMDDIER----KLGF-------G----RNSLITLALLLGSDYSQGVRGLG 224 (583)
Q Consensus 185 ~v~~y~~~~i~~----~lgL-------~----r~qli~laiL~G~DY~pGvpGiG 224 (583)
.+.+++..-+++ +|.. + -+.||.+|.|+|+||+|.+|.+-
T Consensus 294 ~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~ 348 (899)
T 3fqd_A 294 PFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLD 348 (899)
T ss_dssp CEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCC
T ss_pred ceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccC
Confidence 356677765554 3332 2 25899999999999999999764
No 15
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.34 E-value=0.00011 Score=58.27 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=49.9
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhccCC
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQP 438 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~ 438 (583)
.|.+|+..|..+|..-|-|.|.+.+.-.-||+|++-+. -||++|.+|+++.+++++
T Consensus 6 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~~~k~ 61 (62)
T 3lwe_A 6 EVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE-DCKEVLLEFRKKIAENKA 61 (62)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT-TCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh-ccHHHHHHHHHhhHhhcC
Confidence 35789999999999999999999988788999999984 699999999999988644
No 16
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=97.10 E-value=0.0002 Score=58.74 Aligned_cols=53 Identities=19% Similarity=0.438 Sum_probs=47.6
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhcc
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 436 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 436 (583)
.|-+|+..|..+|..-|.|.|.+.+.-.-||+|++-+ .||++|.+|+++....
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~~~ 67 (73)
T 1ap0_A 15 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTA 67 (73)
T ss_dssp EEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTTSS
T ss_pred EEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhhcc
Confidence 4689999999999999999999998888899999999 4999999999877664
No 17
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=97.09 E-value=8.7e-05 Score=59.40 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=46.6
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhcc
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 436 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 436 (583)
|-+|+..|..+|..-|-|.|.+.+.-.-+|+|++-+. ||++|.+|+++....
T Consensus 3 VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~~~~ 54 (64)
T 3mts_A 3 VEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDLERE 54 (64)
T ss_dssp EEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHHHHH
Confidence 4689999999999999999999888788999999994 999999999887655
No 18
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=96.93 E-value=0.00035 Score=54.04 Aligned_cols=50 Identities=20% Similarity=0.479 Sum_probs=43.9
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|.+|+..|..+|..-|-|.|.+.+.-.-||+|++-+ .||++|.+|+++.
T Consensus 4 ~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~q 53 (55)
T 3f2u_A 4 VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQ 53 (55)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC--
T ss_pred EEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHHc
Confidence 3568999999999999999999999888899999999 5999999998764
No 19
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.87 E-value=0.00038 Score=53.79 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=43.2
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
|-+|+..|..+|..-|.|.|.+.+.-.-||+|++-+. ||++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~--~~~li~~f~~~ 53 (55)
T 1pfb_A 6 AEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHHTS
T ss_pred EEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC--CHHHHHHHHHh
Confidence 5689999999999999999999988888999999886 69999999864
No 20
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=96.83 E-value=0.00055 Score=56.16 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=47.7
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhcc
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 436 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 436 (583)
.|-+|+..|..+|..-|.|.|.+.+.-.-||+|++-+. +|++|.+|+++.+.+
T Consensus 15 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~--~~~li~~f~~~~~~~ 67 (74)
T 2kvm_A 15 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEKEERD 67 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS--CHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC--CHHHHHHHHHHhhhh
Confidence 46899999999999999999999988788999999887 689999999988775
No 21
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.00049 Score=53.98 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=43.5
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhc
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL 435 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~ 435 (583)
|.+|+..|..+|..-|-|.|.+.+.-..||+|++-+ .||++|.+|+++..+
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~k~ 56 (59)
T 3fdt_A 6 VEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYKK 56 (59)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC----
T ss_pred EEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhhhh
Confidence 568999999999999999999999888899999999 599999999877644
No 22
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=96.74 E-value=0.00067 Score=52.22 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=43.8
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
|-+|+..|..+|..-|-|.|.+.+.-.-||+|++-+. ||++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~R 53 (54)
T 3i91_A 6 AEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL--DARLLAAFEER 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--CHHHHHHHHHC
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC--CHHHHHHHHhc
Confidence 5689999999999999999999998888999999987 69999999874
No 23
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0011 Score=54.38 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=53.2
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhccCCCCcCCC
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSKPK 444 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~~~ 444 (583)
.|-+|+..|..+|..=|-|.|.+.+.-.-||+|++-+. +|++|.+|+++...+...+.++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--~~~li~~f~~~~~~k~~~~~~p~ 72 (74)
T 2d9u_A 12 AAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKKEHEKEVQNSGPS 72 (74)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCC--CHHHHHHHHHHHHHHCCSSCCCC
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHHCC--CHHHHHHHHHhhhhhHHhhcCCC
Confidence 46799999999999999999999998888999999886 48999999999988877666653
No 24
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=96.60 E-value=0.00082 Score=51.75 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=43.0
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
|-+|+..|..+|..-|-|.|.+.+.-.-||+|++-+. +|++|.+|+++
T Consensus 6 VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~f~~r 53 (54)
T 3h91_A 6 AECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL--DPRLLLAFQKK 53 (54)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC--SHHHHHHHHC-
T ss_pred EEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC--CHHHHHHHHhc
Confidence 5689999999999999999999988888999999987 69999999875
No 25
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=96.48 E-value=0.0014 Score=53.24 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=45.3
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|-+|+..|..+|..-|-|.|.+.+.-.-||+|++-+ .||++|.+|++++
T Consensus 18 ~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 18 AVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEASR 67 (69)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHHC
T ss_pred EEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHHc
Confidence 4679999999999999999999998888899999999 4999999998864
No 26
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=96.47 E-value=0.0019 Score=52.27 Aligned_cols=54 Identities=13% Similarity=0.353 Sum_probs=47.4
Q ss_pred cccceeeccccC-Cccc-eEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhcc
Q 007971 382 PITGIIKSRKLQ-GKEC-FEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALR 436 (583)
Q Consensus 382 ~~~~I~k~R~~~-g~~c-~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~ 436 (583)
.|-+|+..|..+ |..- |-|.|.+.+.-.-||+|++-+. -||++|.+|+++..++
T Consensus 10 ~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~~~~ 65 (70)
T 1g6z_A 10 EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRKRRL 65 (70)
T ss_dssp CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHHTTT
T ss_pred EEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhcccc
Confidence 357899999888 8888 9999999888788999999886 8999999999987664
No 27
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=96.38 E-value=0.0022 Score=53.12 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=49.3
Q ss_pred cccceeeccc-cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhccCCCCcC
Q 007971 382 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRALRQPKKSK 442 (583)
Q Consensus 382 ~~~~I~k~R~-~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~~~~kk~~ 442 (583)
.|.+|+..|. .+|..-|-|.|.+.+.-.-||+|++-+. -||++|.+|+++.+.+ +|+..
T Consensus 15 ~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~-~~~~li~~f~~~~~~k-~k~~~ 74 (78)
T 2dnt_A 15 EVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV-NCEEYIHDFNRRHTEK-QKESG 74 (78)
T ss_dssp CCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT-TCHHHHHHHHHHHSCS-CSCCC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH-hHHHHHHHHHhhhhcc-ccccC
Confidence 4679999987 6898899999999998888999999876 5899999999988775 44444
No 28
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=96.38 E-value=0.0013 Score=53.71 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=42.8
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
.|-+|+..|..+|..-|-|.|.+.+.-.-||+|++-+. ||++|.+|+++
T Consensus 22 eVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~--~~~lI~~F~~~ 70 (72)
T 1pdq_A 22 AAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL--DRRLIDIYEQT 70 (72)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC--STHHHHHHC--
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC--CHHHHHHHHHh
Confidence 46799999999999999999999888788999999886 79999999775
No 29
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=96.12 E-value=0.0016 Score=53.42 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=44.2
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
.|-+|+..|..+|..-|-|.|.+.+.-.-||+|++-+. ||++|.+|+++
T Consensus 23 eVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~--~~~li~~F~~~ 71 (73)
T 2k1b_A 23 AVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL--DPRLVMAYEEK 71 (73)
T ss_dssp CCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS--CHHHHHHHHTS
T ss_pred EEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC--CHHHHHHHHHh
Confidence 46799999999999999999999988788999999886 69999999874
No 30
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=95.87 E-value=0.0063 Score=47.96 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=43.8
Q ss_pred cccceeeccccCCcc-ceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~-c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|-+|+..|..+|.. -|-|.|.+.+.-.-||+|++-+. ||++|.+|..++
T Consensus 9 ~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~--~~~li~~~~~~r 59 (61)
T 3g7l_A 9 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF--GAEKVLKKWKKR 59 (61)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT--BCHHHHHHHHHC
T ss_pred EEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC--CHHHHHHHHHHh
Confidence 357899999999988 89999999998888999999994 999999997764
No 31
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=95.49 E-value=0.0038 Score=49.67 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=44.1
Q ss_pred cccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|-+|+..|..+|..=|-|.|.+.+.-.-||+|++-+.. |++|.+|+++.
T Consensus 12 ~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~--~~li~~f~~~~ 61 (64)
T 2dnv_A 12 AAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD--ARLLAAFESGP 61 (64)
T ss_dssp CCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC--HHHHHHHHCCT
T ss_pred EEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC--HHHHHHHHHHc
Confidence 467999999999999999999999888889999998864 79999998754
No 32
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=95.10 E-value=0.018 Score=49.10 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=45.3
Q ss_pred Ccccceeeccc--cCCccceEEeecCCCC-ceeccchhhhHhhhcchHHHHHHHHHhc
Q 007971 381 CPITGIIKSRK--LQGKECFEVSWEESYG-LKSSVVPADLIESACPEKIVEFEERRAL 435 (583)
Q Consensus 381 ~~~~~I~k~R~--~~g~~c~ei~w~~~~~-l~~~~vP~~lv~~a~Pe~v~~f~~~~~~ 435 (583)
..|-+|+..|. .+|..-|-|.|.+.+. -.-||+|++=+. -||++|.+|+++.+.
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~-~c~~li~~f~~~~~~ 87 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS-GCKQLIEAYWNEHGG 87 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG-TSHHHHHHHHHHHTC
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh-hHHHHHHHHHHHcCC
Confidence 35789999995 5799999999999874 456799998884 599999999998875
No 33
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=95.09 E-value=0.014 Score=47.96 Aligned_cols=51 Identities=12% Similarity=0.272 Sum_probs=44.0
Q ss_pred cccceeecccc-CCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKL-QGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~-~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|.+|+..|.. +|..-|-|.|.+.+.-.-||+|++=+. -|+++|.+|++++
T Consensus 23 eVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~ 74 (75)
T 2rsn_A 23 EVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKVLKKWKKRK 74 (75)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT-TTHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc-ChHHHHHHHHHhh
Confidence 46899999864 688899999999988888999999875 4899999999875
No 34
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=93.49 E-value=0.0055 Score=51.18 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=44.2
Q ss_pred cccceeeccc-cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHhc
Q 007971 382 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRAL 435 (583)
Q Consensus 382 ~~~~I~k~R~-~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~~ 435 (583)
.|.+|+..|. .+|..-|-|.|.+.+.-.-||+|++-+. -||++|.+|+++.+.
T Consensus 25 eVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~~~~ 78 (81)
T 4hae_A 25 EVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL-HCEEFIDEFNGLHMS 78 (81)
T ss_dssp EEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE-ECCCCCCTTCSSCC-
T ss_pred EEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh-hhHHHHHHHHHHccc
Confidence 4689999886 5788899999999988888999998875 599999999866543
No 35
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=92.28 E-value=0.02 Score=44.09 Aligned_cols=46 Identities=17% Similarity=0.410 Sum_probs=38.8
Q ss_pred ccceeeccccC-Ccc-ceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 383 ITGIIKSRKLQ-GKE-CFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 383 ~~~I~k~R~~~-g~~-c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
|-+|+..|..+ |.. -|-|.|.+.+ .-||+|++=+. |++|.+|+++.
T Consensus 3 VE~Ild~r~~~~g~~~~YlVKWkgy~--~~TWEp~~nL~---~~li~~f~~~~ 50 (54)
T 1x3p_A 3 AESVIGKRVGDDGKTIEYLVKWTDMS--DATWEPQDNVD---STLVLLYQQQQ 50 (54)
T ss_dssp SSCCCCBSSCSSSCCCCBCCCCSSSS--SCSCSTTCCSS---SSSHHHHTSSC
T ss_pred EEEEEEEEEcCCCcEEEEEEEECCCC--cCCccchHHCC---HHHHHHHHHHc
Confidence 56888999888 888 8999999973 57899999985 99999998643
No 36
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.00 E-value=0.17 Score=40.63 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=40.9
Q ss_pred cccceeecccc----CC--ccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 382 PITGIIKSRKL----QG--KECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 382 ~~~~I~k~R~~----~g--~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
.|.+|+..|.. +| ..=|=|.|.+.+--..||+|++.+ +|++|.+|++..
T Consensus 13 ~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~r~ 67 (68)
T 2epb_A 13 EVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFESLQ 67 (68)
T ss_dssp CCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHHHC
T ss_pred EEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc---CHHHHHHHHHhh
Confidence 46799998853 46 667889999999889999999888 689999999753
No 37
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=88.80 E-value=0.49 Score=37.61 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=43.0
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
+.+|+..+..+|--.|=|.|.+.+.. .+||+..+...||.+|-+|-++.
T Consensus 15 ~ekI~g~~~~~Gel~fLvKWKg~~~~--d~Vpa~e~n~~~PqlVI~fYE~~ 63 (65)
T 3kup_A 15 PERIIGATDSSGELMFLMKWKDSDEA--DLVLAKEANMKCPQIVIAFYEER 63 (65)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSCC--EEEEHHHHHHHCHHHHHHHHHHH
T ss_pred eeEEeeEEcCCCcEEEEEEECCCChh--heEEHHHHHhhChHHHHHHHHHh
Confidence 46889889999999999999998854 48999999999999999997653
No 38
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=88.69 E-value=0.3 Score=38.38 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNVVL 241 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~il 241 (583)
..|||||++++..|++.||+..-+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i 30 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAEL 30 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHH
Confidence 379999999999999999997533
No 39
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=86.22 E-value=0.43 Score=45.78 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHcCCHHHHHHHHhcChh
Q 007971 219 GVRGLGPESACQIVKSVGDNVVLQRIASEGLS 250 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~il~~~~~~~~~ 250 (583)
+|+||||++|..|++.|++..+.+.+.+...+
T Consensus 76 ~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~ 107 (191)
T 1ixr_A 76 SVSGVGPKVALALLSALPPRLLARALLEGDAR 107 (191)
T ss_dssp SSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred cCCCcCHHHHHHHHHhCChHHHHHHHHhCCHH
Confidence 49999999999999999998887777665443
No 40
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=86.01 E-value=0.61 Score=38.04 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=43.9
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
+.+|+..+..+|.-.|=|.|.+.+. .++||+..+...||.+|-+|-+..
T Consensus 18 ~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~~k~Pq~VI~FYE~~ 66 (74)
T 2fmm_A 18 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEER 66 (74)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHHHHCHHHHHHHHHTT
T ss_pred ceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHhhhChHHHHHHHHHh
Confidence 4689999999999999999999886 569999999999999999998754
No 41
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=85.00 E-value=0.69 Score=38.60 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHcCCHHHHH
Q 007971 219 GVRGLGPESACQIVKSVGDNVVLQ 242 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~il~ 242 (583)
.|||||++++..|++.||+..-+.
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~ 45 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELA 45 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHH
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHH
Confidence 799999999999999999975433
No 42
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=84.62 E-value=0.74 Score=36.37 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~ 239 (583)
.||||||+++|..|+..||+..
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~ 38 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVE 38 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHH
T ss_pred cCCCCCCHHHHHHHHHHcCCHH
Confidence 3899999999999999999864
No 43
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=84.44 E-value=0.66 Score=44.91 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHcCCHHHHHHHHhcChhHHH
Q 007971 219 GVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 253 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~il~~~~~~~~~~~~ 253 (583)
+|+||||++|..|++.|++..+.+.+.+...+...
T Consensus 77 ~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~ 111 (203)
T 1cuk_A 77 KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALV 111 (203)
T ss_dssp HSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred cCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHh
Confidence 39999999999999999998887777765544333
No 44
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=84.18 E-value=0.63 Score=38.14 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=39.6
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
+.+|+.....+|--.|=|.|.+.+. ..+||+..+...||.+|.+|-++
T Consensus 25 ~EkIlg~t~~~Gel~fLVKWKg~~e--~dlVpa~ean~k~PqlVI~FYEe 72 (75)
T 3i3c_A 25 PEKIIGATDSCGDLMFLMKWKDTDE--ADLVLAKEANVKCPQIVIAFYEE 72 (75)
T ss_dssp EEEEEEEEC---CCEEEEEETTSSC--EEEEEHHHHHHHCHHHHHHHHTC
T ss_pred eeEEeeEEccCCcEEEEEEECCCCh--hceEEHHHHhhhChHHHHHHHHH
Confidence 4688988999999999999999886 45899999999999999999654
No 45
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=84.12 E-value=0.65 Score=44.42 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred cccceeeccc---cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHH
Q 007971 382 PITGIIKSRK---LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEER 432 (583)
Q Consensus 382 ~~~~I~k~R~---~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~ 432 (583)
.|.+|+..|. ..|..-|=|.|.+.+-=..||+|++.+...||++|.+|++.
T Consensus 132 ~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 132 IVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 3578998887 68888999999999877889999999988999999999874
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=83.65 E-value=0.38 Score=47.00 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHhCCC-hHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhcChhHHH
Q 007971 195 ERKLGFG-RNSLITLALLLGSDYSQGVRGLGPESACQIVKSVGDNVVLQRIASEGLSFVK 253 (583)
Q Consensus 195 ~~~lgL~-r~qli~laiL~G~DY~pGvpGiG~ktA~~Li~~~g~~~il~~~~~~~~~~~~ 253 (583)
...||+. .+.--.|-.|.. |+|||||+|..|+..|+...+...+.....+...
T Consensus 73 ~~LyGF~~~~Er~lf~~L~s------v~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~ 126 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLS------VSGVGPRLAMAALAVHDAPALRQVLADGNVAALT 126 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHT------STTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred cceEecCcHHHHHHHHHhcC------cCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHh
Confidence 3456664 333333333432 9999999999999999998776666555444333
No 47
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=83.34 E-value=0.48 Score=38.40 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~ 239 (583)
.+|||||+++|.+|++.||+..
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~ 48 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQ 48 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHH
T ss_pred hcCCCCCHHHHHHHHHHcCCHH
Confidence 3899999999999999999864
No 48
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=83.18 E-value=0.83 Score=37.85 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~ 239 (583)
.+|||||+++|.+|++.||+..
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~ 43 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLE 43 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHH
T ss_pred HcCCCCCHHHHHHHHHHCCCHH
Confidence 4799999999999999999864
No 49
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=83.14 E-value=0.53 Score=44.65 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=44.4
Q ss_pred cccceeeccc-----cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHH
Q 007971 382 PITGIIKSRK-----LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 431 (583)
Q Consensus 382 ~~~~I~k~R~-----~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~ 431 (583)
.|.+|+..|. ..|..-|=|.|.+.+--..+|+|++.+...||++|.+|++
T Consensus 122 ~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 122 VPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred eeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhhhhHHHHHHHHHh
Confidence 3578999985 6889999999999987789999999998889999999975
No 50
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=82.30 E-value=1.2 Score=36.80 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=43.6
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHh
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 434 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~ 434 (583)
+.+|+.....+|--.|=|.|.+.+. ..+||+..+...||.+|-+|-++.-
T Consensus 12 ~EkI~g~~~~~Gel~fLvKWKg~~~--~dlVpa~ean~k~PqlVI~FYE~~l 61 (78)
T 3q6s_A 12 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEANVKCPQVVISFYEERL 61 (78)
T ss_dssp EEEEEEEECTTSSCEEEEEETTCSC--EEEEEHHHHHHHSHHHHHHHHHTTE
T ss_pred ceEEeeEEcCCCcEEEEEEECCCCh--hheEeHHHHHhhChHHHHHHHHHhc
Confidence 4688888999999999999999885 4589999999999999999976654
No 51
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=82.22 E-value=0.67 Score=36.82 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=42.0
Q ss_pred cccceeeccc-cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHH
Q 007971 382 PITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEE 431 (583)
Q Consensus 382 ~~~~I~k~R~-~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~ 431 (583)
.|.+|+..|. .+|..=|=|.|.+.+-=..||+|+++....+++.|.+|..
T Consensus 13 ~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 13 MIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLFKQSYWN 63 (64)
T ss_dssp CCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETTCCCTTHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCcccCcchHHHHHHHHh
Confidence 4679999987 5788888899999998899999999766666666999975
No 52
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.19 E-value=1 Score=37.61 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHcCCHH
Q 007971 219 GVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~ 239 (583)
+|||||+++|.+|++.||+..
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~ 56 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLE 56 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHH
T ss_pred cCCCCCHHHHHHHHHHCCCHH
Confidence 789999999999999999863
No 53
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=78.03 E-value=1.9 Score=36.28 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=43.3
Q ss_pred ccceeeccccCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHHh
Q 007971 383 ITGIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERRA 434 (583)
Q Consensus 383 ~~~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~~ 434 (583)
+..|+.....+|---|=|.|.+.+.. .+||+..+...||.+|-+|-++..
T Consensus 28 ~EkIlgat~~~Gel~fLVKWKg~~e~--DlVpa~ean~k~PqlVI~FYEerl 77 (87)
T 3p7j_A 28 AEKILGASDNNGRLTFLIQFKGVDQA--EMVPSSVANEKIPRMVIHFYEERL 77 (87)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSSC--EEEEHHHHHHHCHHHHHHHHHHTC
T ss_pred ceEEeeEEccCCcEEEEEEECCCCcc--ceEeHHHHhhhChHHHHHHHHHhc
Confidence 46888888899999999999998854 479999999999999999966654
No 54
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=74.91 E-value=1.7 Score=42.53 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNVVL 241 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~il 241 (583)
.||||||+++|..|++.||+.+-+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i 194 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENI 194 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHH
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHH
Confidence 699999999999999999997543
No 55
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=60.79 E-value=5 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHHHHHHcCCHH
Q 007971 219 GVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~ 239 (583)
+|||||+++|..|++.||+..
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~ 186 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLE 186 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHH
T ss_pred cCCCCCHHHHHHHHHHcCCHH
Confidence 799999999999999999953
No 56
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=57.57 E-value=6.8 Score=34.56 Aligned_cols=52 Identities=8% Similarity=0.187 Sum_probs=40.7
Q ss_pred ceeeccccCCccceEEeecCCCCceeccchhhhHhh---hcchHHHHHHHHHhcc
Q 007971 385 GIIKSRKLQGKECFEVSWEESYGLKSSVVPADLIES---ACPEKIVEFEERRALR 436 (583)
Q Consensus 385 ~I~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~---a~Pe~v~~f~~~~~~~ 436 (583)
.|+..|..+|..=|=|.|.+-+..--+|+|.+=+.. ....+|..|.++-.+.
T Consensus 47 ~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~~e~ 101 (115)
T 2b2y_C 47 AGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (115)
T ss_dssp TTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC-----
T ss_pred cccccceeCCcEEEEEEECCCCchhcccCCHHHcCCccchHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999999875 2346999998875443
No 57
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=56.97 E-value=2.3 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCHHHH
Q 007971 218 QGVRGLGPESACQIVKSVGDNVVL 241 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~g~~~il 241 (583)
.||||||+++|..|++.||+.+-+
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~~i 199 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVKKM 199 (226)
T ss_dssp ------------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHHHH
Confidence 599999999999999999997533
No 58
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=55.84 E-value=67 Score=30.40 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=31.2
Q ss_pred CEEEeeHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHHHHHcCCEEEEEEc
Q 007971 25 KRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76 (583)
Q Consensus 25 k~IaIDas~wL~~~~~a~~~~~g~~~~~~Lr~lf~rl~~Ll~~gI~PIFVFD 76 (583)
+.|+|||++-.+.... . ...-.+++..-+..|.+.|.++|.||+
T Consensus 25 R~IVIDGsNVA~~~g~--~------~~Fs~rgI~~aV~yf~~rGh~~v~Vfv 68 (185)
T 3v32_B 25 RPVVIDGSNVAMSHGN--K------EVFSCRGILLAVNWFLERGHTDITVFV 68 (185)
T ss_dssp CCEEEEHHHHHHHHTT--T------TSEEHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEeCHHHHhhhCC--C------CCcCHHHHHHHHHHHHHcCCCceEEEe
Confidence 6899999998774321 0 112345666667778899999888887
No 59
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=47.67 E-value=14 Score=35.16 Aligned_cols=50 Identities=8% Similarity=0.221 Sum_probs=42.8
Q ss_pred eeccccCCccceEEeecCCCCceeccchhhhHhh---hcchHHHHHHHHHhcc
Q 007971 387 IKSRKLQGKECFEVSWEESYGLKSSVVPADLIES---ACPEKIVEFEERRALR 436 (583)
Q Consensus 387 ~k~R~~~g~~c~ei~w~~~~~l~~~~vP~~lv~~---a~Pe~v~~f~~~~~~~ 436 (583)
+..|..+|...|=|.|.+...+..+|+|.+-+.. ..+.+|..|.++....
T Consensus 49 ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~ 101 (187)
T 2b2y_A 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (187)
T ss_dssp CC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhcc
Confidence 5678889999999999999999999999999974 5778999999887653
No 60
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=45.55 E-value=95 Score=30.29 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=31.2
Q ss_pred CEEEeeHHHHHHHhhcccCCCCCCCchhHHHHHHHHHHHHHHcCCEEEEEEc
Q 007971 25 KRVCIDLSCWIVQLQNVNKSYRPQTDKLFLRGLFHRLRALIALNCGLIFVSD 76 (583)
Q Consensus 25 k~IaIDas~wL~~~~~a~~~~~g~~~~~~Lr~lf~rl~~Ll~~gI~PIFVFD 76 (583)
+.|+|||++-.+.. .. ....-.+++..-+..|.+.|.+.|.||+
T Consensus 25 R~IVIDGsNVA~~~--g~------~~~Fs~rgI~~aV~yF~~RGh~~V~Vfv 68 (223)
T 3v33_A 25 RPVVIDGSNVAMSH--GN------KEVFSCRGILLAVNWFLERGHTDITVFV 68 (223)
T ss_dssp CCEEEEHHHHHHHS--SS------TTSEEHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CeEEEeCHHHHhhh--CC------CCCcCHHHHHHHHHHHHHcCCCceEEEe
Confidence 68999999987743 11 1112346666677788999999888885
No 61
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=42.70 E-value=15 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHcCCHH
Q 007971 219 GVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~ 239 (583)
.|||||+++|..|+..||+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe 492 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYS 492 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHH
T ss_pred ccCCCCHHHHHHHHHHhcCHH
Confidence 589999999999999999974
No 62
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=39.95 E-value=14 Score=29.34 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHc
Q 007971 219 GVRGLGPESACQIVKSV 235 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~ 235 (583)
.+||||+++|.+|+..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 68999999999999875
No 63
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=34.77 E-value=30 Score=33.54 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHH
Q 007971 219 GVRGLGPESACQIVKS 234 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~ 234 (583)
.+||||+|+|.+++-.
T Consensus 30 ~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAFF 45 (212)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6899999999999865
No 64
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=32.17 E-value=35 Score=33.43 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHH
Q 007971 219 GVRGLGPESACQIVKS 234 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~ 234 (583)
-+||||+|+|..++-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6899999999999866
No 65
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=26.11 E-value=37 Score=38.45 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHcCCHH
Q 007971 219 GVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~ 239 (583)
||||||+++|..|++.||+.+
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~ 536 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLE 536 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHH
T ss_pred cccCccHHHHHHHHHHcCCHH
Confidence 677777777777777777754
No 66
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=25.70 E-value=32 Score=33.26 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.4
Q ss_pred CCCCCCCCHHHHHHHHHHcCC
Q 007971 217 SQGVRGLGPESACQIVKSVGD 237 (583)
Q Consensus 217 ~pGvpGiG~ktA~~Li~~~g~ 237 (583)
+..|||||+|+|-+|+.++.+
T Consensus 125 L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 125 LTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTSTTCCHHHHHHHHHHHTT
T ss_pred HhhCCCCCHHHHHHHHHHHHH
Confidence 359999999999999977543
No 67
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=25.24 E-value=64 Score=25.61 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=36.9
Q ss_pred ccceeeccc-cCCccceEEeecCCCCceeccchhhhHhhhcchHHHHHHHHH
Q 007971 383 ITGIIKSRK-LQGKECFEVSWEESYGLKSSVVPADLIESACPEKIVEFEERR 433 (583)
Q Consensus 383 ~~~I~k~R~-~~g~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~v~~f~~~~ 433 (583)
|..|+.-.. ..|-=-|=+.|.+.+. .. ||+......||.+|-.|-+..
T Consensus 13 Ve~I~g~~~~~~g~L~flikwk~~~~--~~-Vpa~~a~~kcPq~vI~FYE~~ 61 (68)
T 1e0b_A 13 VSSIDTIERKDDGTLEIYLTWKNGAI--SH-HPSTITNKKCPQKMLQFYESH 61 (68)
T ss_dssp EEEEEEEEECTTSCEEEEEEETTSCE--EE-EEHHHHHHHSHHHHHHHHHTC
T ss_pred eeEEEEEEECCCCEEEEEEEECCCCc--cc-eEHHHhHhhCCHHHHHHHHHh
Confidence 345555444 6777778899998875 33 999999999999999997653
No 68
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=24.03 E-value=45 Score=31.26 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=34.6
Q ss_pred ccceEEeecCCCCceeccchhhhHhhhcchH--HHHHHHHHhc
Q 007971 395 KECFEVSWEESYGLKSSVVPADLIESACPEK--IVEFEERRAL 435 (583)
Q Consensus 395 ~~c~ei~w~~~~~l~~~~vP~~lv~~a~Pe~--v~~f~~~~~~ 435 (583)
..-|=|.|.+...+-.+|+|.+-+.. ||.+ |..|.++...
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~-~~glkKl~nf~kk~~~ 87 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQ-VRGLKRLDNYCKQFII 87 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCS-CTTHHHHHHHHHHHTH
T ss_pred ceEEEEEECCCccccCeecCHHHHhh-chHHHHHHHHHHHhhh
Confidence 34577999999999999999999986 9998 9999887653
No 69
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=23.96 E-value=39 Score=30.52 Aligned_cols=16 Identities=50% Similarity=0.503 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHH
Q 007971 219 GVRGLGPESACQIVKS 234 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~ 234 (583)
.+||||+++|.+||+.
T Consensus 67 ~LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKN 82 (134)
T ss_dssp GSTTCTHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHc
Confidence 5899999999999953
No 70
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=23.08 E-value=17 Score=40.62 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHcCCHHHHH
Q 007971 219 GVRGLGPESACQIVKSVGDNVVLQ 242 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~il~ 242 (583)
||||||+++|..|++.||+.+-|.
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~ 556 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIA 556 (615)
T ss_dssp ------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999875333
No 71
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=22.93 E-value=54 Score=32.97 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHcCCH-HHHHHHHh
Q 007971 219 GVRGLGPESACQIVKSVGDN-VVLQRIAS 246 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~-~il~~~~~ 246 (583)
.||||+++.|..|++.|++. .+++.+..
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 79999999999999999998 46666654
No 72
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=21.87 E-value=19 Score=35.54 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHH-cCCHHHH
Q 007971 218 QGVRGLGPESACQIVKS-VGDNVVL 241 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~-~g~~~il 241 (583)
..|||||+++|..|+.. |++.+-|
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L 42 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDV 42 (241)
T ss_dssp -------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHH
Confidence 37999999999999998 7775433
No 73
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=21.63 E-value=44 Score=31.72 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=17.6
Q ss_pred CCCCCCCCCHHHHHHHHHHcC
Q 007971 216 YSQGVRGLGPESACQIVKSVG 236 (583)
Q Consensus 216 Y~pGvpGiG~ktA~~Li~~~g 236 (583)
.+..|||||+|+|-+|+..+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 346999999999999987754
No 74
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=21.37 E-value=65 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhhhc
Q 007971 555 DSETEKSPELERKARALRMFIASIRDDI 582 (583)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
||+++|+.|+.+|-|++-.=+.-.|+++
T Consensus 5 ~~~~~~~ee~r~klR~IEvk~me~rD~L 32 (61)
T 2e62_A 5 SSGNGMDEEQRQKRRRIEVALIEYRETL 32 (61)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999998876666666543
No 75
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=21.18 E-value=35 Score=28.95 Aligned_cols=16 Identities=50% Similarity=0.503 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHH
Q 007971 219 GVRGLGPESACQIVKS 234 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~ 234 (583)
.+||||+++|..|+..
T Consensus 30 ~lpGIG~~~A~~IV~~ 45 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKN 45 (97)
T ss_dssp GSTTCTTHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHc
Confidence 6899999999999984
No 76
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=20.90 E-value=46 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHc
Q 007971 218 QGVRGLGPESACQIVKSV 235 (583)
Q Consensus 218 pGvpGiG~ktA~~Li~~~ 235 (583)
..|||||+++|..|+..+
T Consensus 43 ~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 43 RSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHSTTCCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHH
Confidence 378999999999999875
No 77
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.70 E-value=60 Score=36.11 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCCee
Q 007971 124 EAKALGLSLGVPCL 137 (583)
Q Consensus 124 ~~k~LL~~~GIp~i 137 (583)
+....|+.+|+++.
T Consensus 241 e~l~~L~~~Gf~v~ 254 (586)
T 4glx_A 241 GRLLQFKKWGLPVS 254 (586)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHcCCCCc
Confidence 34566788999864
No 78
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=20.52 E-value=47 Score=37.54 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHHcCCHH
Q 007971 219 GVRGLGPESACQIVKSVGDNV 239 (583)
Q Consensus 219 GvpGiG~ktA~~Li~~~g~~~ 239 (583)
||||||+++|..|++.||+.+
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~ 531 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMD 531 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHH
T ss_pred ccCCccHHHHHHHHHHcCCHH
Confidence 899999999999999999864
Done!