BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007973
         (583 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T61|A Chain A, Crystal Structure Of A Gluconokinase From Sinorhizobium
           Meliloti 1021
 pdb|3T61|B Chain B, Crystal Structure Of A Gluconokinase From Sinorhizobium
           Meliloti 1021
          Length = 202

 Score = 32.3 bits (72), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 237 IDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHL 296
           I + +D+ W W L+   + L   A   P +   S  ++   D +R   P   LAF   H 
Sbjct: 65  IPLTDDDRWPW-LAAIGERL---ASREPVVVSCSALKRSYRDKLRESAPGG-LAFVFLHG 119

Query: 297 SESIGKEFKNSRLTHLLWKVAYATTTMAFKERMGEIEDVSSEAAKWIQQ 345
           SES+  E  + R  H        T     ++  GE+  V+ + A+ + +
Sbjct: 120 SESVLAERXHHRTGHFXPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAE 168


>pdb|3R6N|A Chain A, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
           Of The Human Desmoplakin Plakin Domain
 pdb|3R6N|B Chain B, Crystal Structure Of A Rigid Four Spectrin Repeat Fragment
           Of The Human Desmoplakin Plakin Domain
          Length = 450

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 244 SWMWFLSEFHKALEIH-AESMPQLTFISDGQ------KGIADAVRRKFPNSSLAFCMRHL 296
            W W L +  K +++H  E+     F  + Q      KG+ D++R+K+P       ++HL
Sbjct: 180 QWSWIL-QITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDK-NMPLQHL 237

Query: 297 SESIGKEFKNSR 308
            E I KE +  R
Sbjct: 238 LEQI-KELEKER 248


>pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
           Protein) Reductase From Bacillus Anthracis At 1.87 A
           Resolution
 pdb|3ICC|B Chain B, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier
           Protein) Reductase From Bacillus Anthracis At 1.87 A
           Resolution
          Length = 255

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 318 YATTTMAFKERMGEIEDVSSEAAKWIQQYPPSHW 351
           YATT  AF  R+GE+ED++  AA      P S W
Sbjct: 211 YATTISAFN-RLGEVEDIADTAA--FLASPDSRW 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,909,709
Number of Sequences: 62578
Number of extensions: 659608
Number of successful extensions: 1493
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 3
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)