BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007973
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 12 OS=Rattus norvegicus
GN=Zcchc12 PE=2 SV=1
Length = 401
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 552 REKHTVHCSRCNQTGHYKTTCKAE 575
+ KHTVHCS C + GH K TC E
Sbjct: 340 KRKHTVHCSHCGEEGHSKETCDNE 363
>sp|P19775|TRA6_STAAU Transposase for insertion sequence element IS256 in transposon
Tn4001 OS=Staphylococcus aureus GN=tnp PE=3 SV=1
Length = 390
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 220 ATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADA 279
A DG I F + E++E+W F E+ K + + ISD KG+ A
Sbjct: 187 AIGITKDGDREIIGFMIQSGESEETWTTFF-EYLKERGLQGTEL----VISDAHKGLVSA 241
Query: 280 VRRKFPNSSLAFCMRHLSESI 300
+R+ F N S C H +I
Sbjct: 242 IRKSFTNVSWQRCQVHFLRNI 262
>sp|P59787|TRA6_ENTFA Transposase for insertion sequence element IS256 in transposon
Tn4001 OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=EF_0125 PE=3 SV=1
Length = 390
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 220 ATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADA 279
A DG I F + E++E+W F E+ K + + ISD KG+ A
Sbjct: 187 AIGITKDGDREIIGFMIQSGESEETWTTFF-EYLKERGLQGTEL----VISDAHKGLVSA 241
Query: 280 VRRKFPNSSLAFCMRHLSESI 300
+R+ F N S C H +I
Sbjct: 242 IRKSFTNVSWQRCQVHFLRNI 262
>sp|Q9CZA5|ZCH12_MOUSE Zinc finger CCHC domain-containing protein 12 OS=Mus musculus
GN=Zcchc12 PE=1 SV=1
Length = 402
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 552 REKHTVHCSRCNQTGHYKTTCKAE 575
+ KHT+HCS C + GH K TC E
Sbjct: 341 KRKHTIHCSHCGEEGHSKETCDNE 364
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 351 WALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFS 410
WAL++F + S+ E F+ W + E +V++Q+H K++ F RRLKS
Sbjct: 357 WALLNF---LLPEIFSSAETFDEWFQISGENDQQEVVQQLH-KVLRPFLLRRLKSDVE-K 411
Query: 411 VLAPSAEKRMIEAINHASM----YQVLRSDEVEFEVLSAERSDIVNIGTHCCSC 460
L P E I + + M Y+ L ++E ER ++NI C
Sbjct: 412 GLPPKKE--TILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRKC 463
>sp|Q08DL1|ZCH12_BOVIN Zinc finger CCHC domain-containing protein 12 OS=Bos taurus
GN=ZCCHC12 PE=2 SV=1
Length = 402
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 552 REKHTVHCSRCNQTGHYKTTCKAEIMKS 579
+ KHT+ CS C + GH K TC E K+
Sbjct: 341 KRKHTIRCSYCGEEGHSKETCDNESNKA 368
>sp|Q6PEW1|ZCH12_HUMAN Zinc finger CCHC domain-containing protein 12 OS=Homo sapiens
GN=ZCCHC12 PE=2 SV=2
Length = 402
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 552 REKHTVHCSRCNQTGHYKTTCKAEIMKS 579
+ KHT+ CS C + GH K TC E K+
Sbjct: 340 KRKHTIRCSYCGEEGHSKETCDNESDKA 367
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 351 WALVHFEGTRYGHLSSNIEEFNRWILEARELPIIQVIEQIHCKLMAEFEARRLKSSSWFS 410
W+L++F + S+ E F+ W + E +V++Q+H K++ F RRLKS
Sbjct: 399 WSLLNF---LLPEIFSSAETFDEWFQISGENDQQEVVQQLH-KVLRPFLLRRLKSDVE-K 453
Query: 411 VLAPSAEKRMIEAINHASM----YQVLRSDEVEFEVLSAERSDIVNIGTHCCSC 460
L P E I + + M Y+ L ++E ER ++NI C
Sbjct: 454 GLPPKKE--TILKVGMSQMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKC 505
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,879,666
Number of Sequences: 539616
Number of extensions: 9135905
Number of successful extensions: 20903
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 20896
Number of HSP's gapped (non-prelim): 14
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)