Query 007973
Match_columns 583
No_of_seqs 262 out of 1689
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:02:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc8_A Nucleocapsid protein; H 96.3 0.0016 5.5E-08 38.9 1.7 25 552-576 2-26 (29)
2 1a6b_B Momulv, zinc finger pro 95.1 0.015 5E-07 37.5 2.8 26 554-579 8-33 (40)
3 1dsq_A Nucleic acid binding pr 94.8 0.014 4.8E-07 33.8 1.9 23 557-579 3-25 (26)
4 1u6p_A GAG polyprotein; MLV, A 94.6 0.021 7.1E-07 39.8 2.7 28 552-579 19-46 (56)
5 2ayd_A WRKY transcription fact 93.9 0.13 4.3E-06 38.2 5.8 41 42-82 34-74 (76)
6 1wj2_A Probable WRKY transcrip 93.8 0.14 4.9E-06 38.1 5.9 41 42-82 37-77 (78)
7 2ec7_A GAG polyprotein (PR55GA 93.3 0.045 1.5E-06 37.2 2.4 19 557-575 28-46 (49)
8 3hot_A Transposable element ma 91.2 3.9 0.00013 40.2 14.8 60 212-274 186-252 (345)
9 2a51_A Nucleocapsid protein; s 89.5 0.15 5.2E-06 32.6 1.7 18 558-575 2-19 (39)
10 2bl6_A Nucleocapsid protein P1 89.2 0.17 5.9E-06 31.9 1.8 18 557-574 20-37 (37)
11 2a51_A Nucleocapsid protein; s 88.8 0.2 6.7E-06 32.1 1.9 19 556-574 21-39 (39)
12 1a1t_A Nucleocapsid protein; s 88.7 0.14 4.6E-06 35.7 1.2 20 556-575 33-52 (55)
13 2ysa_A Retinoblastoma-binding 86.6 0.31 1E-05 33.8 1.9 22 554-575 5-26 (55)
14 2rpr_A Flywch-type zinc finger 85.2 1.2 4.1E-05 34.2 5.0 46 30-82 26-74 (87)
15 2ec7_A GAG polyprotein (PR55GA 83.6 0.41 1.4E-05 32.3 1.4 24 553-576 3-26 (49)
16 2bl6_A Nucleocapsid protein P1 83.5 0.41 1.4E-05 30.1 1.3 17 558-574 2-18 (37)
17 2ihx_A Nucleocapsid (NC) prote 82.9 0.41 1.4E-05 34.0 1.2 20 557-576 31-50 (61)
18 1a1t_A Nucleocapsid protein; s 82.6 0.44 1.5E-05 33.1 1.3 24 552-575 8-31 (55)
19 2cqf_A RNA-binding protein LIN 81.8 0.83 2.8E-05 32.7 2.5 22 555-576 28-49 (63)
20 2li8_A Protein LIN-28 homolog 79.3 1 3.5E-05 33.3 2.4 23 555-577 45-67 (74)
21 1cl4_A Protein (GAG polyprotei 78.9 1 3.5E-05 31.8 2.2 22 555-576 29-50 (60)
22 2ihx_A Nucleocapsid (NC) prote 76.9 0.82 2.8E-05 32.4 1.2 21 555-575 3-23 (61)
23 2cqf_A RNA-binding protein LIN 76.6 1.2 4E-05 31.9 1.9 21 555-575 6-26 (63)
24 2li8_A Protein LIN-28 homolog 76.5 1.2 4.1E-05 33.0 2.0 21 555-575 23-43 (74)
25 3nyb_B Protein AIR2; polya RNA 74.8 0.83 2.9E-05 34.7 0.8 21 555-575 4-24 (83)
26 3ts2_A Protein LIN-28 homolog 73.9 1.3 4.4E-05 37.9 1.8 24 555-578 118-141 (148)
27 3ts2_A Protein LIN-28 homolog 71.0 1.6 5.4E-05 37.3 1.7 22 555-576 96-117 (148)
28 2xzm_5 Ribosomal protein S26E 65.3 4.4 0.00015 32.4 3.0 27 531-564 2-28 (119)
29 2ezd_A High mobility group pro 65.0 5.2 0.00018 22.2 2.3 17 531-547 2-18 (26)
30 1cl4_A Protein (GAG polyprotei 64.9 1.3 4.6E-05 31.2 0.0 19 558-576 3-21 (60)
31 3u5c_a 40S ribosomal protein S 62.3 5.2 0.00018 32.0 2.9 27 531-564 2-28 (119)
32 3nyb_B Protein AIR2; polya RNA 62.2 2.7 9.4E-05 31.8 1.3 22 555-576 45-66 (83)
33 3kks_A Integrase, IN; beta-str 61.7 20 0.00069 29.7 7.1 65 200-278 3-67 (152)
34 3l3u_A POL polyprotein; DNA in 60.8 22 0.00074 30.1 7.2 66 199-278 9-74 (163)
35 2lli_A Protein AIR2; RNA surve 54.6 6.7 0.00023 32.2 2.5 22 554-575 103-124 (124)
36 1bco_A MUA domain II, bacterio 52.5 26 0.00088 34.0 6.9 72 199-277 16-95 (327)
37 2lli_A Protein AIR2; RNA surve 52.5 6.6 0.00023 32.2 2.2 21 556-576 64-84 (124)
38 1cxq_A Avian sarcoma virus int 50.1 41 0.0014 28.4 7.1 71 199-278 11-81 (162)
39 3alr_A Nanos protein; zinc-fin 49.8 6 0.00021 30.7 1.3 22 555-576 70-94 (106)
40 1c0m_A Protein (integrase); HI 44.8 45 0.0015 30.4 6.9 71 199-278 10-80 (238)
41 3hph_A Integrase, IN; protein- 44.5 54 0.0018 29.3 7.4 65 200-278 61-125 (219)
42 1fme_A FSD-EY peptide; beta-BE 43.2 16 0.00054 20.0 2.0 20 7-26 6-25 (28)
43 3av9_A Integrase, IN; protein- 42.0 57 0.002 28.2 6.9 65 199-277 29-93 (183)
44 2l0z_A Glycoprotein G2; zinc-b 38.1 15 0.0005 23.2 1.5 15 455-469 21-35 (42)
45 1q1v_A DEK protein; winged-hel 36.0 1.2E+02 0.0041 21.8 6.6 44 89-132 11-57 (70)
46 2x78_A Integrase; viral protei 34.5 74 0.0025 27.7 6.5 70 199-278 13-83 (200)
47 2nrr_A Uvrabc system protein C 33.9 56 0.0019 27.9 5.0 63 200-284 37-99 (159)
48 2qh9_A UPF0215 protein AF_1433 32.1 1.3E+02 0.0044 26.3 7.4 67 200-274 8-74 (184)
49 2jya_A AGR_C_3324P, uncharacte 31.5 39 0.0013 26.6 3.4 33 5-41 50-82 (106)
50 2nrt_A Uvrabc system protein C 30.3 84 0.0029 28.4 5.9 63 200-284 42-104 (220)
51 3f9k_A Integrase; protein-prot 30.2 87 0.003 27.6 6.3 64 200-277 60-123 (210)
52 1c6v_A Protein (SIV integrase) 29.1 1.6E+02 0.0054 24.2 7.5 64 199-276 9-72 (164)
53 3f2k_A Histone-lysine N-methyl 29.0 1.7E+02 0.0057 26.3 8.0 121 209-332 65-210 (226)
54 2ahq_A Sigma-54, RNA polymeras 29.0 91 0.0031 22.9 4.8 47 90-137 16-65 (76)
55 2lju_A Putative oxidoreductase 28.4 62 0.0021 25.6 4.1 30 6-39 59-88 (108)
56 2p5k_A Arginine repressor; DNA 28.0 1.2E+02 0.0041 20.5 5.4 36 100-136 11-46 (64)
57 1k6y_A Integrase; HIV-1, domai 25.2 1.5E+02 0.0052 25.9 7.0 65 199-277 58-122 (212)
58 2bw3_A Transposase; DNA recomb 24.8 2E+02 0.007 29.6 8.8 69 229-303 131-201 (534)
59 2lsn_A Reverse transcriptase; 24.3 3.3E+02 0.011 23.1 8.7 74 198-276 6-88 (165)
60 2k27_A Paired box protein PAX- 24.2 1.4E+02 0.0047 25.0 6.1 41 97-137 90-134 (159)
61 1pdn_C Protein (PRD paired); p 24.0 89 0.0031 24.6 4.7 38 97-135 82-124 (128)
62 1k78_A Paired box protein PAX5 23.3 1.2E+02 0.004 25.0 5.4 41 96-136 96-140 (149)
63 1ne5_A Ergtoxin, cnerg1, ERGTX 23.2 6 0.00021 24.4 -2.0 11 562-572 24-34 (42)
64 1ex4_A Integrase; SH3-like dom 21.4 1.8E+02 0.0061 26.2 6.7 66 199-278 9-74 (239)
65 2hqh_E Restin; beta/BETA struc 20.4 25 0.00087 19.8 0.3 20 557-576 4-23 (26)
No 1
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.29 E-value=0.0016 Score=38.93 Aligned_cols=25 Identities=24% Similarity=0.744 Sum_probs=21.4
Q ss_pred CccCceeCCccCcCCCCCCCCCCcc
Q 007973 552 REKHTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 552 ~~k~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
++++...|.+|++.||-.+.|+.+.
T Consensus 2 ~~r~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 2 QQRKVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCCCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCCCCEEEECCccccCHhHCcccc
Confidence 3456788999999999999999874
No 2
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=95.09 E-value=0.015 Score=37.46 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=22.0
Q ss_pred cCceeCCccCcCCCCCCCCCCccccc
Q 007973 554 KHTVHCSRCNQTGHYKTTCKAEIMKS 579 (583)
Q Consensus 554 k~~~~Cs~C~~~gHn~~tC~~~~~~~ 579 (583)
.....|-+|++.||-++.||.+....
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred CCCCeeeECCCCCcchhhCcCCcccC
Confidence 45678999999999999999987543
No 3
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.79 E-value=0.014 Score=33.77 Aligned_cols=23 Identities=39% Similarity=0.728 Sum_probs=17.8
Q ss_pred eeCCccCcCCCCCCCCCCccccc
Q 007973 557 VHCSRCNQTGHYKTTCKAEIMKS 579 (583)
Q Consensus 557 ~~Cs~C~~~gHn~~tC~~~~~~~ 579 (583)
..|-+|++.||..+.||.+...+
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~~~~ 25 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEXXXX 25 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC----
T ss_pred CeeEeCCCCCcccccCCCccccc
Confidence 57999999999999999886543
No 4
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=94.60 E-value=0.021 Score=39.83 Aligned_cols=28 Identities=18% Similarity=0.547 Sum_probs=22.9
Q ss_pred CccCceeCCccCcCCCCCCCCCCccccc
Q 007973 552 REKHTVHCSRCNQTGHYKTTCKAEIMKS 579 (583)
Q Consensus 552 ~~k~~~~Cs~C~~~gHn~~tC~~~~~~~ 579 (583)
.......|-+||+.||-.+.||.+....
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~~~~~ 46 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKPRGP 46 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCCCSS
T ss_pred CCCCCCcceeCCCCCcccccCcCCcccc
Confidence 3345678999999999999999987654
No 5
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=93.86 E-value=0.13 Score=38.19 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=35.8
Q ss_pred eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973 42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN 82 (583)
Q Consensus 42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~ 82 (583)
-|-.++|+..||+++-.+.+..++....++++..+|||+..
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 35569999999999999999887888889999999999864
No 6
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=93.77 E-value=0.14 Score=38.07 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=35.6
Q ss_pred eEEEEEeecCCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973 42 IRYFAKCVTEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN 82 (583)
Q Consensus 42 ~r~~~~C~~~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~ 82 (583)
-|-.++|+..||+++-.+.+..++....++.+..+|||+..
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 35569999999999999998877788888899999999863
No 7
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=93.28 E-value=0.045 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=11.3
Q ss_pred eeCCccCcCCCCCCCCCCc
Q 007973 557 VHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 557 ~~Cs~C~~~gHn~~tC~~~ 575 (583)
..|-+|++.||-.+.||.+
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 4566666666666666653
No 8
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=91.17 E-value=3.9 Score=40.20 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=39.6
Q ss_pred ccccEEEEEeeecCCCCeeEEEEEEee---ccccchHHHHHHHHHHHhcccccC----CCCeEEEccCcc
Q 007973 212 KYLGTLLSATSFDADGGLFPIAFGVID---VENDESWMWFLSEFHKALEIHAES----MPQLTFISDGQK 274 (583)
Q Consensus 212 ~y~~~l~~~~g~d~~~~~~~~a~~~~~---~E~~~~~~w~l~~l~~~~~~~~~~----~~~~~iitD~~~ 274 (583)
..++.+++..+++..| .+++.+++ .-+.+.|.-+|+.+...+...... ..+.+|+.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 4556777777777777 57777776 457788888888776554210001 346789999865
No 9
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=89.52 E-value=0.15 Score=32.60 Aligned_cols=18 Identities=28% Similarity=0.837 Sum_probs=11.2
Q ss_pred eCCccCcCCCCCCCCCCc
Q 007973 558 HCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 558 ~Cs~C~~~gHn~~tC~~~ 575 (583)
.|-+|++.||-++.||.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 466666666666666653
No 10
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=89.22 E-value=0.17 Score=31.88 Aligned_cols=18 Identities=33% Similarity=1.036 Sum_probs=11.1
Q ss_pred eeCCccCcCCCCCCCCCC
Q 007973 557 VHCSRCNQTGHYKTTCKA 574 (583)
Q Consensus 557 ~~Cs~C~~~gHn~~tC~~ 574 (583)
..|-+|++.||-.+.||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 556666666666666653
No 11
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=88.85 E-value=0.2 Score=32.07 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=17.1
Q ss_pred ceeCCccCcCCCCCCCCCC
Q 007973 556 TVHCSRCNQTGHYKTTCKA 574 (583)
Q Consensus 556 ~~~Cs~C~~~gHn~~tC~~ 574 (583)
...|-+|++.||-.+.||+
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3589999999999999985
No 12
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=88.73 E-value=0.14 Score=35.72 Aligned_cols=20 Identities=25% Similarity=0.713 Sum_probs=13.3
Q ss_pred ceeCCccCcCCCCCCCCCCc
Q 007973 556 TVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 556 ~~~Cs~C~~~gHn~~tC~~~ 575 (583)
...|-+|++.||-.+.||.+
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 35677777777777777654
No 13
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.58 E-value=0.31 Score=33.76 Aligned_cols=22 Identities=32% Similarity=0.842 Sum_probs=19.0
Q ss_pred cCceeCCccCcCCCCCCCCCCc
Q 007973 554 KHTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 554 k~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
.+.+.|-+|++.||-.+.||..
T Consensus 5 p~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 5 SSGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCCccccCCCcCcccccCCCC
Confidence 3567899999999999999954
No 14
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=85.23 E-value=1.2 Score=34.16 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.4
Q ss_pred cceeEEEEeecCeEEEEEeec---CCCceEEEEEEeCCCCceEEEeecccceecCC
Q 007973 30 QHFELRIIKSDLIRYFAKCVT---EGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKN 82 (583)
Q Consensus 30 ~gf~~~~~ks~~~r~~~~C~~---~gC~wrv~~~~~~~~~~~~v~~~~~~H~c~~~ 82 (583)
.||.|...+....+....|.. .+|++++.... +. + .....|||++.
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~----~~--~-~~~~~HnH~p~ 74 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG----HR--I-MVMRSHCHQPD 74 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET----TE--E-EECSCCSSCCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC----CC--E-ECCCCcCCCCc
Confidence 477788777767777799987 58999988763 22 2 25677999774
No 15
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.62 E-value=0.41 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.754 Sum_probs=21.1
Q ss_pred ccCceeCCccCcCCCCCCCCCCcc
Q 007973 553 EKHTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 553 ~k~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
+++...|-+|++.||..+.||.+.
T Consensus 3 ~~r~~~C~~Cg~~GH~a~~C~~~~ 26 (49)
T 2ec7_A 3 QRKVIRCWNCGKEGHSARQCRAPR 26 (49)
T ss_dssp CCCCCBCTTTCCBTCCTTTCCCSS
T ss_pred CCCcCeeeecCCCCcChhhCcCCC
Confidence 466789999999999999999864
No 16
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=83.52 E-value=0.41 Score=30.08 Aligned_cols=17 Identities=35% Similarity=1.056 Sum_probs=15.6
Q ss_pred eCCccCcCCCCCCCCCC
Q 007973 558 HCSRCNQTGHYKTTCKA 574 (583)
Q Consensus 558 ~Cs~C~~~gHn~~tC~~ 574 (583)
.|-+|++.||..+.||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 59999999999999985
No 17
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=82.91 E-value=0.41 Score=34.05 Aligned_cols=20 Identities=30% Similarity=0.720 Sum_probs=14.4
Q ss_pred eeCCccCcCCCCCCCCCCcc
Q 007973 557 VHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 557 ~~Cs~C~~~gHn~~tC~~~~ 576 (583)
..|-+|++.||-.+.||.+-
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC
T ss_pred CeeCCCCCCCCCcCCCcCCC
Confidence 45777777777777777653
No 18
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=82.59 E-value=0.44 Score=33.06 Aligned_cols=24 Identities=33% Similarity=0.865 Sum_probs=20.7
Q ss_pred CccCceeCCccCcCCCCCCCCCCc
Q 007973 552 REKHTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 552 ~~k~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
.+++...|-+|++.||-++.||.+
T Consensus 8 g~~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 8 NQRKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGGGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCCCcceeeeCCCCcChhhcCCC
Confidence 345677899999999999999986
No 19
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.83 E-value=0.83 Score=32.67 Aligned_cols=22 Identities=18% Similarity=0.558 Sum_probs=17.6
Q ss_pred CceeCCccCcCCCCCCCCCCcc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
+...|-+|++.||-.+.||.+.
T Consensus 28 ~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 28 QPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CSSCCTTTCCSSSCTTTCTGGG
T ss_pred CCCccCCcCCcCCccCcCCCcc
Confidence 4677888888888888888764
No 20
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=79.34 E-value=1 Score=33.34 Aligned_cols=23 Identities=17% Similarity=0.519 Sum_probs=17.7
Q ss_pred CceeCCccCcCCCCCCCCCCccc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEIM 577 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~~ 577 (583)
+...|-+|++.||-.+.||.+..
T Consensus 45 ~~~~C~~Cg~~GH~ar~Cp~~~~ 67 (74)
T 2li8_A 45 QPKKCHFCQSISHMVASCPLKAQ 67 (74)
T ss_dssp CCCCCTTTCCTTSCGGGCTTGGG
T ss_pred CCCccCCcCCcCCccCcCcCCcC
Confidence 45678888888888888887654
No 21
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=78.95 E-value=1 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.721 Sum_probs=19.5
Q ss_pred CceeCCccCcCCCCCCCCCCcc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
+...|-+|++.||-.+.||.+.
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 4568999999999999999875
No 22
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=76.95 E-value=0.82 Score=32.45 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=18.3
Q ss_pred CceeCCccCcCCCCCCCCCCc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
+...|-+|++.||-++.||.+
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTT
T ss_pred CCCcccccCCCCeehhhCcCC
Confidence 456799999999999999973
No 23
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.59 E-value=1.2 Score=31.88 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.6
Q ss_pred CceeCCccCcCCCCCCCCCCc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
+...|-+|++.||..+.||.+
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCSC
T ss_pred CCCcccccCCCCcChhhCCCC
Confidence 456799999999999999975
No 24
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=76.49 E-value=1.2 Score=33.02 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=18.5
Q ss_pred CceeCCccCcCCCCCCCCCCc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
+...|-+|++.||-.+.||.+
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSC
T ss_pred CCCcccccCCcCcCcccCCCC
Confidence 456799999999999999964
No 25
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=74.80 E-value=0.83 Score=34.68 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=16.4
Q ss_pred CceeCCccCcCCCCCCCCCCc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
+...|-+|++.||-.+.||..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 456799999999999999875
No 26
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.93 E-value=1.3 Score=37.91 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=19.4
Q ss_pred CceeCCccCcCCCCCCCCCCcccc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEIMK 578 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~~~ 578 (583)
+...|-+|++.||-.+.||.+..+
T Consensus 118 ~~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 118 QPKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp CCCCCTTTCCSSCCGGGCTTTTC-
T ss_pred CCCcccccCCcCCEeccCcCCCCC
Confidence 356899999999999999987665
No 27
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=71.00 E-value=1.6 Score=37.32 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.1
Q ss_pred CceeCCccCcCCCCCCCCCCcc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
+..+|-+|++.||-++.||.+.
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~~~ 117 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKLPP 117 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCSCC
T ss_pred CCCcccEeCCccchhhhCCCCC
Confidence 3578999999999999999843
No 28
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=65.27 E-value=4.4 Score=32.39 Aligned_cols=27 Identities=41% Similarity=0.722 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCccccccccCCccCceeCCccCc
Q 007973 531 PKFRRPPGRPEKKRICLEDLNREKHTVHCSRCNQ 564 (583)
Q Consensus 531 p~~~r~~GRpkk~R~~~~~~~~~k~~~~Cs~C~~ 564 (583)
|..+|..||-|+.|... ...+|.+|+.
T Consensus 2 ~kKRrN~GR~KkgrGhv-------~~V~C~nCgr 28 (119)
T 2xzm_5 2 PVKRRNAGRSQKNRGHT-------RTVPCTNCGR 28 (119)
T ss_dssp CCCCSSTTCCCCSSSCC-------CEEECTTTCC
T ss_pred CcccccCCCCCCCCCCC-------ccEeeCCccc
Confidence 45677778887765443 5788999997
No 29
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=65.04 E-value=5.2 Score=22.18 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.7
Q ss_pred CCCCCCCCCCCCccccc
Q 007973 531 PKFRRPPGRPEKKRICL 547 (583)
Q Consensus 531 p~~~r~~GRpkk~R~~~ 547 (583)
|..+|++||||-..-++
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 45578999998654444
No 30
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=64.85 E-value=1.3 Score=31.15 Aligned_cols=19 Identities=26% Similarity=0.952 Sum_probs=0.0
Q ss_pred eCCccCcCCCCCCCCCCcc
Q 007973 558 HCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 558 ~Cs~C~~~gHn~~tC~~~~ 576 (583)
.|-+|++.||-++.||.+.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp -------------------
T ss_pred ccccCCCCCcCHhhCcCCC
Confidence 5999999999999999864
No 31
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=62.32 E-value=5.2 Score=32.00 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCccccccccCCccCceeCCccCc
Q 007973 531 PKFRRPPGRPEKKRICLEDLNREKHTVHCSRCNQ 564 (583)
Q Consensus 531 p~~~r~~GRpkk~R~~~~~~~~~k~~~~Cs~C~~ 564 (583)
|..+|..||-|+.|... ...+|++|+.
T Consensus 2 ~kKRrN~GR~KkgrGhv-------~~V~C~nCgr 28 (119)
T 3u5c_a 2 PKKRASNGRNKKGRGHV-------KPVRCVNCSK 28 (119)
T ss_dssp CCCCSSTTSCCCSCSCC-------CEEECTTTCC
T ss_pred CcccccCCCCCCCCCCC-------ccEeeccccc
Confidence 45677788877764443 5788999986
No 32
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=62.22 E-value=2.7 Score=31.79 Aligned_cols=22 Identities=36% Similarity=0.914 Sum_probs=19.4
Q ss_pred CceeCCccCcCCCCCCCCCCcc
Q 007973 555 HTVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 555 ~~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
....|-+|++.||-.+.||.+-
T Consensus 45 ~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 45 HTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCeecccCCCCcCcccCCccc
Confidence 4578999999999999999864
No 33
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=61.74 E-value=20 Score=29.71 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=42.6
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
.++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+.... + |..|.||+......
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~-----g--p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY-----T--VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS-----C--CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh-----C--CcEEecCCchHhhH
Confidence 5788999988432 5666777776655 55555 4666666655555443332 2 89999999887644
No 34
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=60.80 E-value=22 Score=30.12 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.6
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+.-.-+|..+....+ +.+|.||+......
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-------~~~i~sD~G~~f~s 74 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-------VKTVHTDNGSNFTS 74 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-------CCEEEECCCGGGGS
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-------CcEEeecChHhhhh
Confidence 35789999998653 5677778777654 56655 45566666666665554443 37899999887643
No 35
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=54.56 E-value=6.7 Score=32.19 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=19.2
Q ss_pred cCceeCCccCcCCCCCCCCCCc
Q 007973 554 KHTVHCSRCNQTGHYKTTCKAE 575 (583)
Q Consensus 554 k~~~~Cs~C~~~gHn~~tC~~~ 575 (583)
.....|-+|++.||..+.||..
T Consensus 103 ~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 103 FHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCCCTTTTSSSCTTTTTSCCC
T ss_pred CCCCCcCCCCCCCcCcccCcCC
Confidence 3567899999999999999974
No 36
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=52.53 E-value=26 Score=34.02 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=49.3
Q ss_pred ccEEEeeceEeeccc---cc---EEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCe--EEEc
Q 007973 199 LPIVSIGGIQLKSKY---LG---TLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQL--TFIS 270 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y---~~---~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~--~iit 270 (583)
..++.+|+|++.... .| .....+.+|...+ .++||.+...|+.++..-+|.......+ .|. .|.+
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G------~P~~~~i~s 88 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG------IPEDFHITI 88 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC------EESSCEEEC
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC------CCCCcEEEe
Confidence 468999999864321 23 3456666777665 4589999988887777776666555443 355 9999
Q ss_pred cCcccHH
Q 007973 271 DGQKGIA 277 (583)
Q Consensus 271 D~~~~l~ 277 (583)
|+.....
T Consensus 89 DnG~~f~ 95 (327)
T 1bco_A 89 DNTRGAA 95 (327)
T ss_dssp CCTTSTT
T ss_pred eCchhhc
Confidence 9987654
No 37
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=52.49 E-value=6.6 Score=32.21 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=18.4
Q ss_pred ceeCCccCcCCCCCCCCCCcc
Q 007973 556 TVHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 556 ~~~Cs~C~~~gHn~~tC~~~~ 576 (583)
...|-+|++.||..+.||...
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCST
T ss_pred CccCCCCCcCCcchhhCCCcc
Confidence 367999999999999999864
No 38
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=50.07 E-value=41 Score=28.38 Aligned_cols=71 Identities=8% Similarity=-0.111 Sum_probs=46.1
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
..++.+|.|+.... +|..+.++.+|...+. ++|+.+- +.+.+.-.-+|+.+....+ .|..|.||+......
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG------RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC------CCeEEEeCCchhhhh
Confidence 35788999986543 3446667778877654 4666665 5666555555555544443 367999999987643
No 39
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=49.85 E-value=6 Score=30.72 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=19.1
Q ss_pred CceeCCccCcCC---CCCCCCCCcc
Q 007973 555 HTVHCSRCNQTG---HYKTTCKAEI 576 (583)
Q Consensus 555 ~~~~Cs~C~~~g---Hn~~tC~~~~ 576 (583)
|.+.|..|+..| |+.+-||...
T Consensus 70 R~Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 70 RQYKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp GGCCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccccCCCCCCcCCcccceecCCCCC
Confidence 568899999988 9999999765
No 40
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=44.78 E-value=45 Score=30.45 Aligned_cols=71 Identities=8% Similarity=-0.112 Sum_probs=48.0
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
..++.+|.|+.... ++-.+.++.+|...+ .++|+.+- +++.+.-.-+|+.+....+ .|.+|.||+......
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g------~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG------RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC------CCSEEEECSCHHHHS
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC------CCcEEEECCCCcccc
Confidence 35789999987543 334566667776655 45677765 7777766666666655554 367999999877643
No 41
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=44.54 E-value=54 Score=29.26 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=42.0
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
.++.+|.|+..++ +.++.+|...+.. +++. +.+++.+...-+|..+.... + |..|.||+......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~-----g--p~~i~sDnG~~F~s 125 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMF-----A--PKSLQSDNGPAFVA 125 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHH-----C--CCEEEECCCHHHHS
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHh-----C--CcEEEeCCCchhhh
Confidence 5677998876443 5667777777665 5554 45555555555555444333 3 88999999987643
No 42
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=43.24 E-value=16 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.1
Q ss_pred ccccCeeCCHHHHHHHHHHH
Q 007973 7 FVVGQEFPDVKAFRNAIKEA 26 (583)
Q Consensus 7 l~~G~~F~s~~e~~~ai~~y 26 (583)
-..|.+|.+..|++.+|..|
T Consensus 6 kykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHC
T ss_pred hhcccccccHHHHHHHHHHh
Confidence 35799999999999998754
No 43
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=42.05 E-value=57 Score=28.16 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=38.3
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIA 277 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~ 277 (583)
..++.+|.++..++| + ++.+|...+.. +|+.+- +++.+....++..+.... ++.+|.||+.....
T Consensus 29 ~~~w~~D~~~~~g~~---~--l~~vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~i~sDnG~ef~ 93 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV---I--LVAVHVASGYI-EAEVIP-AETGQETAYFLLKLAGRW-------PVKTVHTDNGSNFT 93 (183)
T ss_dssp TTEEEEEEEEETTEE---E--EEEEETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHS-------CCCEEECSSHHHHH
T ss_pred CCEEEEeccccCCcE---E--EEEEECCCCCE-EEEEeC-CccchHHHHHHHHHHHHc-------CCcEEEecCchhcc
Confidence 457889999883332 3 34447666554 666544 445444444444333333 23899999987764
No 44
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=38.05 E-value=15 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=13.1
Q ss_pred CcccccCCccccCCC
Q 007973 455 THCCSCRDWQLYGIP 469 (583)
Q Consensus 455 ~~~CsC~~~~~~giP 469 (583)
...|+|+.|...|.|
T Consensus 21 ~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKP 35 (42)
T ss_dssp TSSBTTTTBCCCCCC
T ss_pred CceeccccccCCCCc
Confidence 578999999998877
No 45
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=36.03 E-value=1.2e+02 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHHhhc-C-CCCChHHHHHHHHHHh-CcccCHHHHH
Q 007973 89 QASVDWIVSFIEERLRD-N-INYKPKDILQDIHKQY-GIIIPYKQAW 132 (583)
Q Consensus 89 ~~s~~~la~~~~~~l~~-~-~~~~p~~i~~~l~~~~-g~~~~~~~~~ 132 (583)
.++-.-+...+++.|+. + ..++.++|...|.+++ |..++-.+.+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~ 57 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDF 57 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHH
Confidence 56677788888898883 3 3689999999999999 9999965543
No 46
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=34.47 E-value=74 Score=27.71 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred ccEEEeec-eEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHH
Q 007973 199 LPIVSIGG-IQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIA 277 (583)
Q Consensus 199 ~~vv~~D~-t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~ 277 (583)
..++.+|- ++.... +|..+.++.+|...+. .+++.+ .+.+.+...- .|..... ...|..|.||+.....
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~---~l~~~~~----~g~p~~i~sDnG~~f~ 82 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVK---SLNVLTS----IAIPRVIHSDQGAAFT 82 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHH---HHHHHTT----TCCCSEEEECSCHHHH
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHH---HHHHHHH----hCCCcEEEecCCccee
Confidence 35788886 454433 5667778888877665 456665 5555555444 4444444 4568899999987654
Q ss_pred H
Q 007973 278 D 278 (583)
Q Consensus 278 ~ 278 (583)
.
T Consensus 83 s 83 (200)
T 2x78_A 83 S 83 (200)
T ss_dssp S
T ss_pred h
Confidence 3
No 47
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=33.94 E-value=56 Score=27.88 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHH
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADA 279 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~A 279 (583)
=|++.|+...+..|+- |-+-+ +..++|.-+-+.+...... ...|-.|+.|+.+|-.+|
T Consensus 37 mVVf~~g~p~K~~YRr------------------f~I~~-~g~DDya~M~Evl~RR~~r---~~~PDLilIDGGkgQl~a 94 (159)
T 2nrr_A 37 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYSK---HPLPNLLFVDGGIGQVNA 94 (159)
T ss_dssp EEEEETTEECGGGCEE------------------EEC------CHHHHHHHHHHHHHTT---SCCCSEEEESSCHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eecCC-CCCCHHHHHHHHHHHHhcc---CCCCCEEEEeCCHHHHHH
Confidence 3788889998888875 22222 3348888888888887752 256889999999999998
Q ss_pred hhhcC
Q 007973 280 VRRKF 284 (583)
Q Consensus 280 i~~vf 284 (583)
..+++
T Consensus 95 A~~vl 99 (159)
T 2nrr_A 95 AIEAL 99 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 48
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=32.12 E-value=1.3e+02 Score=26.32 Aligned_cols=67 Identities=9% Similarity=-0.028 Sum_probs=47.9
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcc
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQK 274 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~ 274 (583)
.|+.+|-.|. . +...+..+-++ +....-++|+.+.-...++..-+++.+++.-. ..++.+|+.|+..
T Consensus 8 rv~GiDds~~--~-~~~~l~gvv~~-~~~v~g~~~~~~~vdG~dat~~i~~~~~~l~~----~p~~~vvllDG~g 74 (184)
T 2qh9_A 8 RFLGIDDSFD--D-RKCCVVGCVTC-GGYVEGFLYTEIDIDGLDATDKLISMVRRSKF----REQIKCIFLPGIT 74 (184)
T ss_dssp EEEEEEEEEC--S-SCEEEEEEEEE-TTEEEEEEEEEECTTCSCHHHHHHHHHTTCTT----TTTEEEEEESSSE
T ss_pred EEEEEEcccC--C-CceEEEEEEEE-CCEEEEEEEEEEEECChhHHHHHHHHHHhcCC----CCCCcEEEECCEe
Confidence 5899999997 2 44555555566 77788899999998889999866666543211 1125899999885
No 49
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=31.54 E-value=39 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=25.6
Q ss_pred CcccccCeeCCHHHHHHHHHHHHHhcceeEEEEeecC
Q 007973 5 HNFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKSDL 41 (583)
Q Consensus 5 ~~l~~G~~F~s~~e~~~ai~~ya~~~gf~~~~~ks~~ 41 (583)
+-=.+.+.|+|+|+|.. ||.++|..|.+..-..
T Consensus 50 ~~~qv~L~F~skE~Aia----yAek~G~~y~V~ep~~ 82 (106)
T 2jya_A 50 MKQQVKLTFETQEQAEA----YAQRKGIEYRVILPKE 82 (106)
T ss_dssp SEEEEEEEESSHHHHHH----HHHHHTCEEEECCCTT
T ss_pred ccccceEecCCHHHHHH----HHHHcCCEEEEeCCCc
Confidence 33457889999999875 7899999999865443
No 50
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=30.33 E-value=84 Score=28.42 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=47.8
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHH
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADA 279 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~A 279 (583)
=||+-|+...++.|+- |-+-+ +..++|.-+-+.+...... ...|-.|+.|+.+|-.+|
T Consensus 42 mVvf~~g~p~k~~YRr------------------f~i~~-~g~DDya~m~Evl~RR~~r---~~~PDLiliDGGkgQl~~ 99 (220)
T 2nrt_A 42 LVVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYSK---HPLPNLLFVDGGIGQVNA 99 (220)
T ss_dssp EEEEETTEECGGGCEE------------------EEEEC-SSCCHHHHHHHHHHHHHTT---SCCCSEEEESSSHHHHHH
T ss_pred EEEEeCCccChhhCce------------------eeCCC-CCCCHHHHHHHHHHHHhcc---CCCCCEEEEeCCHHHHHH
Confidence 3788889888888875 33333 3358898888888888752 257889999999999998
Q ss_pred hhhcC
Q 007973 280 VRRKF 284 (583)
Q Consensus 280 i~~vf 284 (583)
..+++
T Consensus 100 a~~vl 104 (220)
T 2nrt_A 100 AIEAL 104 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 51
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=30.18 E-value=87 Score=27.63 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=40.3
Q ss_pred cEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHH
Q 007973 200 PIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIA 277 (583)
Q Consensus 200 ~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~ 277 (583)
.++.+|.|+..++ +.++.+|...+ +++++.+ .+++.+...-+|..+....+ +..|.||+.....
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~-~~~~~~~~~~~l~~~~~~~g-------~~~i~sDnG~~F~ 123 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVI-PQESGRQTALFLLKLASRWP-------ITHLHTDNGANFT 123 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEE-SSCCHHHHHHHHHHHHTTSC-------CSEEEECCCTTTS
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEe-CCcchHHHHHHHHHHHHHcC-------CCEEEeCCCchhh
Confidence 4788998888553 35666777666 5555554 44666666655554433332 3459999998654
No 52
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=29.08 E-value=1.6e+02 Score=24.22 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=38.5
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGI 276 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l 276 (583)
..++.+|.++. +|. +.++.+|..-+ +.+++.+- +.+.+...-++.. .+. ..+|.+|.||+....
T Consensus 9 ~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~~-~~~~~~~~~~~~~---~~~----~~~~~~i~sDnG~~f 72 (164)
T 1c6v_A 9 LGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVIP-QETGRQTALFLLK---LAG----RWPITHLHTDNGANF 72 (164)
T ss_dssp TTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEECS-SCSHHHHHHHHHH---HHT----TSCCCEEECCCCSST
T ss_pred CCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEcC-CCchHHHHHHHHH---HHH----hcCCCEEEeCCchhh
Confidence 35788999988 333 33444887666 44566443 4555555444433 333 234789999998765
No 53
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=29.04 E-value=1.7e+02 Score=26.33 Aligned_cols=121 Identities=8% Similarity=0.125 Sum_probs=62.1
Q ss_pred eecccccEEEEEeeecCCCCeeEEEEEEee---ccccchHHHHHHHHHHHhcc---cccCCCCeEEEccCccc-----HH
Q 007973 209 LKSKYLGTLLSATSFDADGGLFPIAFGVID---VENDESWMWFLSEFHKALEI---HAESMPQLTFISDGQKG-----IA 277 (583)
Q Consensus 209 ~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~---~E~~~~~~w~l~~l~~~~~~---~~~~~~~~~iitD~~~~-----l~ 277 (583)
.++++.+.+++.++++++|.. ++.+++ .=+.+.|.-+|+.+...+.. ......+.+++.|..+. +.
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~ 141 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTL 141 (226)
T ss_dssp ----CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHH
T ss_pred ccccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHH
Confidence 456677889999999888764 456664 45677888888776443311 00124567888898652 33
Q ss_pred HHhhh----cC---CCCccccchh-HHHHHHhhhccCc------hhhHHHHHHHHccCHHHHHHHHHHH
Q 007973 278 DAVRR----KF---PNSSLAFCMR-HLSESIGKEFKNS------RLTHLLWKVAYATTTMAFKERMGEI 332 (583)
Q Consensus 278 ~Ai~~----vf---P~a~~~~C~~-Hi~~n~~~~~~~~------~~~~~~~~~~~~~t~~~f~~~~~~l 332 (583)
..+.+ ++ |.+.-..-+- |+.+.++..+.+. .+.+.+.....+.+.+.+....+.|
T Consensus 142 ~~l~~~~~~~~~~P~ySPdlnpie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~ 210 (226)
T 3f2k_A 142 QKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAENAFQEFVESQSTDFYATGINQL 210 (226)
T ss_dssp HHHHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCBCSSHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHhhcceeecCCCCCCCcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHhHHhhcCcHHHHHHHHHH
Confidence 33332 22 2233333333 5555555444333 3333344444444555555554444
No 54
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=28.97 E-value=91 Score=22.87 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHhhcC-C--CCChHHHHHHHHHHhCcccCHHHHHHHHHH
Q 007973 90 ASVDWIVSFIEERLRDN-I--NYKPKDILQDIHKQYGIIIPYKQAWRAKER 137 (583)
Q Consensus 90 ~s~~~la~~~~~~l~~~-~--~~~p~~i~~~l~~~~g~~~~~~~~~~~~~~ 137 (583)
.+...+...++++|... + -++-.+|.+.|.++ |+.++..++...|+.
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~ 65 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARRTVAKYREM 65 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHH
Confidence 45667778888888853 3 37789999999776 999999998776654
No 55
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=28.41 E-value=62 Score=25.59 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred cccccCeeCCHHHHHHHHHHHHHhcceeEEEEee
Q 007973 6 NFVVGQEFPDVKAFRNAIKEAAIAQHFELRIIKS 39 (583)
Q Consensus 6 ~l~~G~~F~s~~e~~~ai~~ya~~~gf~~~~~ks 39 (583)
-=.+...|+|+|+|.. ||.++|..|.+..-
T Consensus 59 ~~qv~L~F~skE~Aia----yAek~G~~y~V~ep 88 (108)
T 2lju_A 59 KQQVCLSFTTRELAIA----YAVAHKIDYTVLQD 88 (108)
T ss_dssp CCCSCEEESSHHHHHH----HHHHTTCEEEEECS
T ss_pred cccceEecCCHHHHHH----HHHHcCCEEEEecC
Confidence 3457889999999875 78999999998653
No 56
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=27.98 E-value=1.2e+02 Score=20.54 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHhhcCCCCChHHHHHHHHHHhCcccCHHHHHHHHH
Q 007973 100 EERLRDNINYKPKDILQDIHKQYGIIIPYKQAWRAKE 136 (583)
Q Consensus 100 ~~~l~~~~~~~p~~i~~~l~~~~g~~~~~~~~~~~~~ 136 (583)
...+..+..++..+|.+.+.+. |..+|..++||.-+
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~-~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHh-CCCcCHHHHHHHHH
Confidence 3455567789999999999654 78899999998765
No 57
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=25.19 E-value=1.5e+02 Score=25.92 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIA 277 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~ 277 (583)
..++.+|.++..++ +.++.+|...+. ++++.+- +.+.+...-++..+.... .+.+|.||+.....
T Consensus 58 ~~~w~~D~~~~~~~-----~~l~~vD~~Sr~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~i~sDnG~~f~ 122 (212)
T 1k6y_A 58 PGIWQLDCTHLEGK-----VILVAVHVASGY-IEAEVIP-AETGQETAYFLLKLAGRW-------PVKTVHTDNGSNFT 122 (212)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTTE-EEEEEES-SCCHHHHHHHHHHHHHHS-------CCCEEECCCSTTTT
T ss_pred CCeeeEEEecCCCe-----EEEEEEEccCCc-EEEEEec-CcchHHHHHHHHHHHHhc-------CCeEEEcCCCcccc
Confidence 35788998887332 233444655544 4555554 445454444444443322 24899999997753
No 58
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=24.78 E-value=2e+02 Score=29.57 Aligned_cols=69 Identities=12% Similarity=0.261 Sum_probs=46.1
Q ss_pred eeEEEEEEeec--cccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHHHhhhcCCCCccccchhHHHHHHhhh
Q 007973 229 LFPIAFGVIDV--ENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIADAVRRKFPNSSLAFCMRHLSESIGKE 303 (583)
Q Consensus 229 ~~~~a~~~~~~--E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~ 303 (583)
..++++.-++. .+.++..-.+..+.+..+.. ...-..++||....+..|++.. .+..|.-|++.-+.+.
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~--~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVE--DLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCC--CCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCC--cccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 34566766663 45566655555555555421 1235678999999998888753 5889999998877664
No 59
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=24.30 E-value=3.3e+02 Score=23.12 Aligned_cols=74 Identities=11% Similarity=-0.065 Sum_probs=42.4
Q ss_pred cccEEEeeceEeecccc-----cEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHH----HHHhcccccCCCCeEE
Q 007973 198 CLPIVSIGGIQLKSKYL-----GTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEF----HKALEIHAESMPQLTF 268 (583)
Q Consensus 198 ~~~vv~~D~t~~~~~y~-----~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l----~~~~~~~~~~~~~~~i 268 (583)
+.-||+.||..+-|... +=.-++++.++....+.-++....+...+.. -.+..| ..++. ...++.|
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~-Aei~Al~~al~~al~----~~~~v~I 80 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQM-AEIAAVEFACKKALK----IPGPVLV 80 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHH-HHHHHHHHHHHHHHH----SSSCEEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHH-HHHHHHHHHHHHHhc----CCCeEEE
Confidence 34578999998877432 2344455555555555555665555444433 333333 34444 4567899
Q ss_pred EccCcccH
Q 007973 269 ISDGQKGI 276 (583)
Q Consensus 269 itD~~~~l 276 (583)
.||..-.+
T Consensus 81 ~TDS~Yvi 88 (165)
T 2lsn_A 81 ITDSFYVA 88 (165)
T ss_dssp EESCHHHH
T ss_pred EeChHHHH
Confidence 99976543
No 60
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.18 E-value=1.4e+02 Score=24.99 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHh----CcccCHHHHHHHHHH
Q 007973 97 SFIEERLRDNINYKPKDILQDIHKQY----GIIIPYKQAWRAKER 137 (583)
Q Consensus 97 ~~~~~~l~~~~~~~p~~i~~~l~~~~----g~~~~~~~~~~~~~~ 137 (583)
..+.+.+..++.+++.+|.+.+.+.. |..++++++++.-..
T Consensus 90 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 90 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 44556666788999999999987765 678999998876544
No 61
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.97 E-value=89 Score=24.61 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHhCc-----ccCHHHHHHHH
Q 007973 97 SFIEERLRDNINYKPKDILQDIHKQYGI-----IIPYKQAWRAK 135 (583)
Q Consensus 97 ~~~~~~l~~~~~~~p~~i~~~l~~~~g~-----~~~~~~~~~~~ 135 (583)
..+.+.+..++.+++.+|...+.+. |+ .+|++++++.-
T Consensus 82 ~~i~~~~~~~~~~s~~~i~~~l~~~-g~~~~~~~~s~~tv~r~l 124 (128)
T 1pdn_C 82 NRIEEYKRSSPGMFSWEIREKLIRE-GVCDRSTAPSVSAISRLV 124 (128)
T ss_dssp HHHHHTTTTCTTCCHHHHHHHHHHT-SSSCSTTCCCHHHHHHHC
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHc-CCccccCCcCHHHHHHHH
Confidence 4455666678899999999998765 87 69999988764
No 62
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.33 E-value=1.2e+02 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHh----CcccCHHHHHHHHH
Q 007973 96 VSFIEERLRDNINYKPKDILQDIHKQY----GIIIPYKQAWRAKE 136 (583)
Q Consensus 96 a~~~~~~l~~~~~~~p~~i~~~l~~~~----g~~~~~~~~~~~~~ 136 (583)
...+.+.+..++.+++.+|.+.+.+.. |+.+|++++++.-.
T Consensus 96 ~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~ 140 (149)
T 1k78_A 96 VEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIR 140 (149)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Confidence 345566666788899999999887766 78899999887654
No 63
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A
Probab=23.19 E-value=6 Score=24.38 Aligned_cols=11 Identities=45% Similarity=1.108 Sum_probs=8.9
Q ss_pred cCcCCCCCCCC
Q 007973 562 CNQTGHYKTTC 572 (583)
Q Consensus 562 C~~~gHn~~tC 572 (583)
|+..|||..||
T Consensus 24 ckkagh~~gtc 34 (42)
T 1ne5_A 24 CKNAGHNGGTC 34 (42)
T ss_dssp HHHHTSSCEEE
T ss_pred HHhhCCCCceE
Confidence 55599999888
No 64
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=21.43 E-value=1.8e+02 Score=26.20 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=38.9
Q ss_pred ccEEEeeceEeecccccEEEEEeeecCCCCeeEEEEEEeeccccchHHHHHHHHHHHhcccccCCCCeEEEccCcccHHH
Q 007973 199 LPIVSIGGIQLKSKYLGTLLSATSFDADGGLFPIAFGVIDVENDESWMWFLSEFHKALEIHAESMPQLTFISDGQKGIAD 278 (583)
Q Consensus 199 ~~vv~~D~t~~~~~y~~~l~~~~g~d~~~~~~~~a~~~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~~~iitD~~~~l~~ 278 (583)
..++.+|.|+..++ +.++.+|...+ +++|+.+- +++.....-++..+... .++.+|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~-----~~l~~vD~~Sr-~i~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 9 PGIWQLDCTHLEGK-----VILVAVHVASG-YIEAEVIP-AETGQETAYFLLKLAGR-------WPVKTIHTDNGSNFTG 74 (239)
T ss_dssp GGEEEEEEEEETTE-----EEEEEECTTTC-CEEEECCS-SSSTTHHHHHHHHHHHH-------SCCCEEEECCCHHHHC
T ss_pred CCEEEEeccccCCe-----EEEEEEECCCC-eEEEEEeC-CCCHHHHHHHHHHHHHh-------cCCcEEEecCcHHHHH
Confidence 35899999998332 23344465544 45666544 45555544444433332 2358999999987643
No 65
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=20.45 E-value=25 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.763 Sum_probs=17.0
Q ss_pred eeCCccCcCCCCCCCCCCcc
Q 007973 557 VHCSRCNQTGHYKTTCKAEI 576 (583)
Q Consensus 557 ~~Cs~C~~~gHn~~tC~~~~ 576 (583)
..|-.|-..||....|+.-.
T Consensus 4 pYCe~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCNDDE 23 (26)
T ss_dssp CEETTTTEESSCGGGCCTTC
T ss_pred ccchHHHHhCcccccCCccc
Confidence 47999999999999997543
Done!