Query 007974
Match_columns 583
No_of_seqs 283 out of 1144
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 17:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 1.5E-12 3.3E-17 102.8 6.3 54 333-386 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.3 1.7E-12 3.7E-17 102.1 5.2 49 334-382 2-55 (55)
3 smart00353 HLH helix loop heli 99.2 1.6E-11 3.5E-16 95.2 6.5 49 338-386 1-52 (53)
4 KOG1318 Helix loop helix trans 99.2 2.6E-11 5.7E-16 129.8 6.0 61 327-387 227-291 (411)
5 KOG1319 bHLHZip transcription 98.9 8.6E-10 1.9E-14 107.1 3.7 55 334-388 63-124 (229)
6 KOG3561 Aryl-hydrocarbon recep 98.8 4.1E-09 8.8E-14 120.9 6.8 81 334-416 21-107 (803)
7 KOG4304 Transcriptional repres 98.7 7.5E-09 1.6E-13 105.4 4.3 53 334-386 33-93 (250)
8 KOG2483 Upstream transcription 98.0 1.6E-05 3.5E-10 80.5 7.3 55 334-388 60-117 (232)
9 KOG2588 Predicted DNA-binding 97.9 4.8E-06 1E-10 96.7 2.3 56 333-388 276-332 (953)
10 KOG3960 Myogenic helix-loop-he 97.8 3.7E-05 7.9E-10 78.3 6.9 56 337-392 122-179 (284)
11 KOG0561 bHLH transcription fac 97.3 0.00022 4.8E-09 74.4 4.9 55 333-387 60-116 (373)
12 KOG4029 Transcription factor H 97.2 0.00029 6.4E-09 70.7 4.3 53 336-388 112-168 (228)
13 PLN03217 transcription factor 97.0 0.0016 3.4E-08 56.9 5.7 45 345-389 19-69 (93)
14 KOG3910 Helix loop helix trans 96.8 0.0018 3.9E-08 71.4 5.4 52 335-386 528-583 (632)
15 KOG3560 Aryl-hydrocarbon recep 94.1 0.04 8.7E-07 61.8 3.5 40 341-380 33-76 (712)
16 KOG3898 Transcription factor N 93.5 0.15 3.2E-06 52.7 6.2 50 336-385 75-127 (254)
17 KOG4447 Transcription factor T 92.2 0.076 1.7E-06 51.2 1.8 52 335-386 80-133 (173)
18 KOG3558 Hypoxia-inducible fact 89.8 0.24 5.2E-06 57.2 3.0 47 336-382 49-99 (768)
19 KOG3559 Transcriptional regula 83.3 1 2.2E-05 49.5 3.4 44 340-383 8-55 (598)
20 KOG4395 Transcription factor A 80.6 2.8 6E-05 43.7 5.2 52 335-386 176-230 (285)
21 KOG3582 Mlx interactors and re 43.2 6.9 0.00015 45.9 -0.5 52 335-386 653-709 (856)
22 PF15392 Joubert: Joubert synd 27.5 1.4E+02 0.0031 32.4 6.1 54 334-387 57-115 (329)
23 KOG4447 Transcription factor T 25.4 48 0.001 32.6 2.1 44 340-383 29-74 (173)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=1.5e-12 Score=102.77 Aligned_cols=54 Identities=50% Similarity=0.773 Sum_probs=50.3
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 333 AAEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 333 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 356799999999999999999999999998 789999999999999999998863
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.32 E-value=1.7e-12 Score=102.11 Aligned_cols=49 Identities=55% Similarity=0.889 Sum_probs=46.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC-----CCCchhhhHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 382 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-----~K~dKAsIL~~AIeYIK~Lq 382 (583)
+..|+..||+||++||+.|.+|+++||.+ .|++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999988 58999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.24 E-value=1.6e-11 Score=95.19 Aligned_cols=49 Identities=53% Similarity=0.736 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCC---CCCCchhhhHHHHHHHHHHHHHHHH
Q 007974 338 NLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 338 ~~~ERrRRdrINe~~~~Lr~LVP~---~~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
+..||+||++||+.|..|+.+||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5689999999999999999999886
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.17 E-value=2.6e-11 Score=129.82 Aligned_cols=61 Identities=41% Similarity=0.736 Sum_probs=54.6
Q ss_pred ccccchhhhccchhHHHHHHHHHHHHHHHHhhcCCCC----CCchhhhHHHHHHHHHHHHHHHHH
Q 007974 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQM 387 (583)
Q Consensus 327 ~~rr~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~Lq~qvq~ 387 (583)
..|.+++++.||++|||||++||++|++|..|||.|+ |..|..||..+++||+.||+..++
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999999995 678999999999999999998774
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.90 E-value=8.6e-10 Score=107.11 Aligned_cols=55 Identities=33% Similarity=0.595 Sum_probs=49.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCCC-------CCchhhhHHHHHHHHHHHHHHHHHh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHCN-------KTDKASMLDEAIEYLKSLQLQLQMS 388 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~-------K~dKAsIL~~AIeYIK~Lq~qvq~L 388 (583)
++.|...||+|||-||..+..|++|||.|. |+.||.||.++|+||.+|++++.+-
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kq 124 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQ 124 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999999999999999999999999874 8899999999999999999877654
No 6
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.83 E-value=4.1e-09 Score=120.92 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=70.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCCC----CCchhhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc--hhhhh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMSQVMWMGSGMAPLMF--PGMQH 407 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~Lq~qvq~Le~~~m~~~~~P~~~--p~~~~ 407 (583)
+++|+.+||||||++|..|.+|.+|||.|. |+||.+||++||.+||.+++.- ++.-.....+.|.++ ++|.|
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~--~~~~~~~~d~KpSflS~~eL~~ 98 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE--SENSSIDQDYKPSFLSNDELTH 98 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh--cccccccccccccccchHHHHH
Confidence 568999999999999999999999999886 9999999999999999998863 224455677889888 78999
Q ss_pred HHhhhcCCC
Q 007974 408 YMSRMGMGM 416 (583)
Q Consensus 408 ~~~~~~~g~ 416 (583)
+|..+..||
T Consensus 99 LmLeAlDGF 107 (803)
T KOG3561|consen 99 LILEALDGF 107 (803)
T ss_pred HHHHHhcCe
Confidence 999887774
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.73 E-value=7.5e-09 Score=105.44 Aligned_cols=53 Identities=36% Similarity=0.540 Sum_probs=47.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC--------CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC--------NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--------~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
+..|-++|||||+|||+.|.+|++||+.+ .|++||.||+.||+|||.|+...+
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 34688999999999999999999999955 478999999999999999998755
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.97 E-value=1.6e-05 Score=80.53 Aligned_cols=55 Identities=29% Similarity=0.469 Sum_probs=47.8
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCCC--CC-chhhhHHHHHHHHHHHHHHHHHh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHCN--KT-DKASMLDEAIEYLKSLQLQLQMS 388 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~--K~-dKAsIL~~AIeYIK~Lq~qvq~L 388 (583)
+..||..||+||+.|.++|..|+.+||... |. ..++||++|++||+.|+.+....
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 457999999999999999999999999775 32 37999999999999999876543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.90 E-value=4.8e-06 Score=96.66 Aligned_cols=56 Identities=36% Similarity=0.560 Sum_probs=51.4
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhcCCCC-CCchhhhHHHHHHHHHHHHHHHHHh
Q 007974 333 AAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQMS 388 (583)
Q Consensus 333 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~-K~dKAsIL~~AIeYIK~Lq~qvq~L 388 (583)
.+.+||++|||.|..||++|.+|+.+||+.. |+.|..+|+.||+||++|+...+.|
T Consensus 276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~l 332 (953)
T KOG2588|consen 276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKL 332 (953)
T ss_pred ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence 3557999999999999999999999999775 9999999999999999999987765
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.82 E-value=3.7e-05 Score=78.28 Aligned_cols=56 Identities=30% Similarity=0.418 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhh-cCCCC-CCchhhhHHHHHHHHHHHHHHHHHhhhhc
Q 007974 337 HNLSERRRRDRINEKMRALQEL-IPHCN-KTDKASMLDEAIEYLKSLQLQLQMSQVMW 392 (583)
Q Consensus 337 H~~~ERrRRdrINe~~~~Lr~L-VP~~~-K~dKAsIL~~AIeYIK~Lq~qvq~Le~~~ 392 (583)
-.+.||||=.|+||.|.+|+.- +++-+ .+-|..||..||+||+.||.-++++..+.
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3588999999999999999875 55554 58899999999999999999999776544
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.34 E-value=0.00022 Score=74.35 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=48.2
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhcCCC--CCCchhhhHHHHHHHHHHHHHHHHH
Q 007974 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQM 387 (583)
Q Consensus 333 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~Lq~qvq~ 387 (583)
.++.-|.-||||=.-||..|..||.|||.- .|++||.||+.+.+||.+|+.+.-+
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 345678889999999999999999999965 5999999999999999999876443
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.23 E-value=0.00029 Score=70.68 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=47.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcCC----CCCCchhhhHHHHHHHHHHHHHHHHHh
Q 007974 336 VHNLSERRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKSLQLQLQMS 388 (583)
Q Consensus 336 ~H~~~ERrRRdrINe~~~~Lr~LVP~----~~K~dKAsIL~~AIeYIK~Lq~qvq~L 388 (583)
.+|..||.|=..+|..|.+||.+||. ..|+.|..+|..||.||++|+.-++.-
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~ 168 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQ 168 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccc
Confidence 46777999999999999999999993 568999999999999999999988843
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.97 E-value=0.0016 Score=56.90 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcCCC------CCCchhhhHHHHHHHHHHHHHHHHHhh
Q 007974 345 RDRINEKMRALQELIPHC------NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (583)
Q Consensus 345 RdrINe~~~~Lr~LVP~~------~K~dKAsIL~~AIeYIK~Lq~qvq~Le 389 (583)
-|.||+-+..||.|+|.. .|..-+-||++|+.||+.|+.+|..|.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLS 69 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLS 69 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999954 366777899999999999999999874
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.76 E-value=0.0018 Score=71.43 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=45.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcCCCCC----CchhhhHHHHHHHHHHHHHHHH
Q 007974 335 EVHNLSERRRRDRINEKMRALQELIPHCNK----TDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 335 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~~K----~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
...|..||-|=..|||.|++|-.+.----| -.|..||..||..|-.|++||.
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVR 583 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVR 583 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998653333 3599999999999999999999
No 15
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.13 E-value=0.04 Score=61.83 Aligned_cols=40 Identities=38% Similarity=0.676 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCC----CCCCchhhhHHHHHHHHHH
Q 007974 341 ERRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKS 380 (583)
Q Consensus 341 ERrRRdrINe~~~~Lr~LVP~----~~K~dKAsIL~~AIeYIK~ 380 (583)
-||-|||+|..++.|..|+|- .+|+||.+||.-+|-|++.
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 367899999999999999994 4699999999999999863
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.54 E-value=0.15 Score=52.74 Aligned_cols=50 Identities=36% Similarity=0.484 Sum_probs=43.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcCC---CCCCchhhhHHHHHHHHHHHHHHH
Q 007974 336 VHNLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQL 385 (583)
Q Consensus 336 ~H~~~ERrRRdrINe~~~~Lr~LVP~---~~K~dKAsIL~~AIeYIK~Lq~qv 385 (583)
.-|..||+|=-.+|+.|+.||++||. ..|+.|+..|.-|-+||..|++-.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 35678999999999999999999994 358999999999999999998643
No 17
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.21 E-value=0.076 Score=51.18 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=45.9
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcCCC--CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 335 EVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 335 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
-.||+.||+|-..+|+.|.+||.++|.. .|++|.-.|+-|..||-.|=.-++
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 3699999999999999999999999955 689999999999999988865444
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.75 E-value=0.24 Score=57.25 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=39.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCC----CCCchhhhHHHHHHHHHHHH
Q 007974 336 VHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQ 382 (583)
Q Consensus 336 ~H~~~ERrRRdrINe~~~~Lr~LVP~~----~K~dKAsIL~~AIeYIK~Lq 382 (583)
.-.-+.|-||-|-|+-|.+|..+||-- .-+|||+|+.-||-|+|-=+
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk 99 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRK 99 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHH
Confidence 344567999999999999999999933 36899999999999997543
No 19
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=83.34 E-value=1 Score=49.54 Aligned_cols=44 Identities=32% Similarity=0.514 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC----CCchhhhHHHHHHHHHHHHH
Q 007974 340 SERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQL 383 (583)
Q Consensus 340 ~ERrRRdrINe~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~Lq~ 383 (583)
..|.||++-|-.|.+|..|+|-.. .+||++|+.-|..|||.-.-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~v 55 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNV 55 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHh
Confidence 458999999999999999999553 58999999999999986543
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=80.64 E-value=2.8 Score=43.72 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=46.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcCCCC---CCchhhhHHHHHHHHHHHHHHHH
Q 007974 335 EVHNLSERRRRDRINEKMRALQELIPHCN---KTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 335 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~~---K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
..-|..||+|=..+|..|+.|+.+||..+ |++|-..|.+|-.||--|-..++
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 35688999999999999999999999664 78899999999999998877765
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=43.16 E-value=6.9 Score=45.85 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=45.3
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcCCCC-----CCchhhhHHHHHHHHHHHHHHHH
Q 007974 335 EVHNLSERRRRDRINEKMRALQELIPHCN-----KTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 335 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~~-----K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
-.|.-+|.+||++|.-.+..|-.++-+.. |+.++.-|+.+++||..++.+..
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~ 709 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERV 709 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhcc
Confidence 36999999999999999999999998664 67788889999999998887655
No 22
>PF15392 Joubert: Joubert syndrome-associated
Probab=27.45 E-value=1.4e+02 Score=32.41 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=36.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhc-----CCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELI-----PHCNKTDKASMLDEAIEYLKSLQLQLQM 387 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LV-----P~~~K~dKAsIL~~AIeYIK~Lq~qvq~ 387 (583)
++...+..|+||+||-+.+..|.++. |-|.+-+-..+-.+-|.-.+.++.+...
T Consensus 57 rEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdR 115 (329)
T PF15392_consen 57 REIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDR 115 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998876 5555544444444555554455444443
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=25.44 E-value=48 Score=32.57 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC--CCchhhhHHHHHHHHHHHHH
Q 007974 340 SERRRRDRINEKMRALQELIPHCN--KTDKASMLDEAIEYLKSLQL 383 (583)
Q Consensus 340 ~ERrRRdrINe~~~~Lr~LVP~~~--K~dKAsIL~~AIeYIK~Lq~ 383 (583)
.|+.|..++|+.+.-|+.|+|+.. ++.+.--|..+.+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 578889999999999999999764 33333336666666666554
Done!