Query 007974
Match_columns 583
No_of_seqs 283 out of 1144
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.6E-15 5.5E-20 128.5 6.5 60 331-390 4-64 (82)
2 4h10_B Circadian locomoter out 99.5 5.8E-15 2E-19 122.4 6.6 59 331-389 6-65 (71)
3 4ati_A MITF, microphthalmia-as 99.5 9.5E-15 3.2E-19 131.6 7.2 63 329-391 23-89 (118)
4 4h10_A ARYL hydrocarbon recept 99.5 3.6E-15 1.2E-19 124.2 3.2 56 329-384 5-64 (73)
5 1an4_A Protein (upstream stimu 99.5 3.4E-15 1.2E-19 120.8 2.8 53 334-386 6-64 (65)
6 1a0a_A BHLH, protein (phosphat 99.5 3.4E-15 1.2E-19 121.0 2.0 53 334-386 3-62 (63)
7 1hlo_A Protein (transcription 99.4 1.7E-13 5.9E-18 115.2 6.2 58 333-390 12-71 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 1.8E-13 6.2E-18 115.6 6.1 57 334-390 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 4.6E-13 1.6E-17 114.9 6.2 56 334-389 7-65 (88)
10 3u5v_A Protein MAX, transcript 99.3 7.2E-13 2.4E-17 111.1 4.9 57 334-390 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 6.6E-12 2.2E-16 106.1 6.9 56 334-389 2-60 (80)
12 4f3l_A Mclock, circadian locom 99.1 1.2E-10 4.2E-15 120.1 7.4 77 334-410 13-92 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 1.7E-10 5.8E-15 94.9 4.8 53 334-386 13-67 (68)
14 2ql2_B Neurod1, neurogenic dif 99.0 6.1E-10 2.1E-14 89.4 5.8 52 335-386 4-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 5.4E-10 1.9E-14 116.8 7.0 79 330-412 10-94 (387)
16 4ath_A MITF, microphthalmia-as 98.5 1.1E-07 3.6E-12 81.0 6.2 44 345-388 4-51 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.1E-08 1.1E-12 81.4 2.4 46 338-383 19-67 (68)
18 4aya_A DNA-binding protein inh 97.9 1.3E-05 4.6E-10 70.0 6.6 46 341-386 33-81 (97)
19 3iot_A Maltose-binding protein 30.1 13 0.00045 38.3 0.6 8 527-534 436-443 (449)
20 3muj_A Transcription factor CO 28.2 65 0.0022 29.7 4.8 35 347-381 95-133 (138)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=1.6e-15 Score=128.47 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=55.6
Q ss_pred chhhhccchhHHHHHHHHHHHHHHHHhhcCCC-CCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 007974 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (583)
Q Consensus 331 ~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~K~dKAsIL~~AIeYIK~Lq~qvq~Le~ 390 (583)
...+..|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||++|+.+++.|+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 7999999999999999999999998854
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=122.41 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=53.1
Q ss_pred chhhhccchhHHHHHHHHHHHHHHHHhhcCCC-CCCchhhhHHHHHHHHHHHHHHHHHhh
Q 007974 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (583)
Q Consensus 331 ~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~K~dKAsIL~~AIeYIK~Lq~qvq~Le 389 (583)
...+.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||+.||.++.=||
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34567899999999999999999999999975 599999999999999999999988443
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.53 E-value=9.5e-15 Score=131.61 Aligned_cols=63 Identities=33% Similarity=0.623 Sum_probs=51.2
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHhhcCCCC----CCchhhhHHHHHHHHHHHHHHHHHhhhh
Q 007974 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMSQVM 391 (583)
Q Consensus 329 rr~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~Lq~qvq~Le~~ 391 (583)
++++++..|+++||+||++||++|.+|+.|||.|. |++|++||++||+||++||.+++.|+..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999999999999985 6789999999999999999999988654
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=3.6e-15 Score=124.22 Aligned_cols=56 Identities=38% Similarity=0.607 Sum_probs=50.9
Q ss_pred ccchhhhccchhHHHHHHHHHHHHHHHHhhcCCC----CCCchhhhHHHHHHHHHHHHHH
Q 007974 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQLQ 384 (583)
Q Consensus 329 rr~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP~~----~K~dKAsIL~~AIeYIK~Lq~q 384 (583)
+.++++.+|+++||+||++||+.|.+|+.|||.| .|+|||+||+.||+|||.|+.-
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4556678999999999999999999999999987 6999999999999999999753
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3.4e-15 Score=120.80 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=49.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCCC------CCchhhhHHHHHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~------K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
+..|+++||+||++||+.|.+|+.|||.|. |++|++||++||+||++||.+++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999886 78999999999999999998754
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.50 E-value=3.4e-15 Score=120.95 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=48.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC-------CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-------~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
+.+|+++||+||++||..|.+|+.|||.+ .|++||+||++||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999966 466799999999999999998764
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=1.7e-13 Score=115.17 Aligned_cols=58 Identities=31% Similarity=0.552 Sum_probs=53.9
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhcCCC--CCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 007974 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (583)
Q Consensus 333 a~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~Lq~qvq~Le~ 390 (583)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||+.|+.+++.|+.
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987 5999999999999999999999998864
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.8e-13 Score=115.56 Aligned_cols=57 Identities=32% Similarity=0.564 Sum_probs=52.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC--CCCchhhhHHHHHHHHHHHHHHHHHhhh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~Lq~qvq~Le~ 390 (583)
+..|+..||+||++||+.|..|+.+||.+ .|++|++||.+||+||+.|+.+++.|+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999985 7999999999999999999999887753
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.37 E-value=4.6e-13 Score=114.95 Aligned_cols=56 Identities=32% Similarity=0.475 Sum_probs=52.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHHHHHHhh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~qvq~Le 389 (583)
+..||..||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+.+.|+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999976 599999999999999999999988764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=7.2e-13 Score=111.12 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=49.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC---CCC-chhhhHHHHHHHHHHHHHHHHHhhh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKT-DKASMLDEAIEYLKSLQLQLQMSQV 390 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~-dKAsIL~~AIeYIK~Lq~qvq~Le~ 390 (583)
+..||..||+||++||+.|.+|+.+||.+ .|. +|+.||..||+||+.|++++++|+.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999999953 455 7889999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=6.6e-12 Score=106.12 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=51.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHHHHHHhh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~qvq~Le 389 (583)
+..||..||+||+.||++|..|+++||.+ .|.+|+.||.+||+||+.|+.+.+.|+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999965 588999999999999999999998774
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.07 E-value=1.2e-10 Score=120.14 Aligned_cols=77 Identities=23% Similarity=0.418 Sum_probs=53.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcC-CCCCCchhhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc--hhhhhHHh
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQLQMSQVMWMGSGMAPLMF--PGMQHYMS 410 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP-~~~K~dKAsIL~~AIeYIK~Lq~qvq~Le~~~m~~~~~P~~~--p~~~~~~~ 410 (583)
+..|+++||+||++||+.|.+|++||| ...|+||++||+.||+|||.|+......+.-.......|.++ ..+.+++.
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFTQLML 92 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHHHHHH
Confidence 457999999999999999999999999 667999999999999999999876442111112234556655 33445443
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.02 E-value=1.7e-10 Score=94.88 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=48.5
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhcCCC--CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 334 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
+..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++|++.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45699999999999999999999999964 589999999999999999998764
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.97 E-value=6.1e-10 Score=89.42 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=47.9
Q ss_pred hccchhHHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 335 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 335 ~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
..||..||+|+..||+.|..|+.+||.. .|++|..||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999965 489999999999999999998775
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=5.4e-10 Score=116.79 Aligned_cols=79 Identities=28% Similarity=0.459 Sum_probs=58.2
Q ss_pred cchhhhccchhHHHHHHHHHHHHHHHHhhcC----CCCCCchhhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCc--h
Q 007974 330 RSRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQLQLQMSQVMWMGSGMAPLMF--P 403 (583)
Q Consensus 330 r~ra~~~H~~~ERrRRdrINe~~~~Lr~LVP----~~~K~dKAsIL~~AIeYIK~Lq~qvq~Le~~~m~~~~~P~~~--p 403 (583)
.+.++++|+.+||+||+|||+.|.+|+.||| ...|+||++||+.||+|||.|+.... ........|.++ .
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~ 85 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATN----PYTEANYKPTFLSDD 85 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC----------CCSSCTTSCHH
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccc----cccccccCcccCCHH
Confidence 3455778999999999999999999999999 56799999999999999999985332 122234456555 3
Q ss_pred hhhhHHhhh
Q 007974 404 GMQHYMSRM 412 (583)
Q Consensus 404 ~~~~~~~~~ 412 (583)
.+.+++...
T Consensus 86 ~~~~~ll~~ 94 (387)
T 4f3l_B 86 ELKHLILRA 94 (387)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 455655543
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.53 E-value=1.1e-07 Score=81.03 Aligned_cols=44 Identities=32% Similarity=0.625 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhcCCCC----CCchhhhHHHHHHHHHHHHHHHHHh
Q 007974 345 RDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMS 388 (583)
Q Consensus 345 RdrINe~~~~Lr~LVP~~~----K~dKAsIL~~AIeYIK~Lq~qvq~L 388 (583)
|++||++|.+|..|||.++ |.+|++||..||+||++||+.++.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999874 6899999999999999999877765
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=3.1e-08 Score=81.41 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHH
Q 007974 338 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 383 (583)
Q Consensus 338 ~~~ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~ 383 (583)
+..||+|+..||+.|..||.+||.. .|++|..||..||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4668999999999999999999965 589999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=70.01 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 007974 341 ERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (583)
Q Consensus 341 ERrRRdrINe~~~~Lr~LVP~~---~K~dKAsIL~~AIeYIK~Lq~qvq 386 (583)
||.|=..||+.|..||.+||.. .|+.|..+|..||+||+.|+..++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4677789999999999999965 489999999999999999999988
No 19
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=30.05 E-value=13 Score=38.32 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred cCccchhh
Q 007974 527 LSGKMVGE 534 (583)
Q Consensus 527 ~~~~~~~~ 534 (583)
.+|++|-.
T Consensus 436 ~~~~~~~~ 443 (449)
T 3iot_A 436 TAGKLGTG 443 (449)
T ss_dssp --------
T ss_pred CCCccccC
Confidence 34555443
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=28.25 E-value=65 Score=29.70 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCC----CCCchhhhHHHHHHHHHHH
Q 007974 347 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 381 (583)
Q Consensus 347 rINe~~~~Lr~LVP~~----~K~dKAsIL~~AIeYIK~L 381 (583)
.|+-.|..|+.+||.- .++-|-.||++|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5888999999999955 4688999999999998876
Done!