BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007975
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana
GN=NDB2 PE=1 SV=1
Length = 582
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/584 (76%), Positives = 506/584 (86%), Gaps = 3/584 (0%)
Query: 1 MRGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKK 60
MR ++ +ER S+AF D+ SL++++V+ST+ GG LIAYSEANAS A A E G KKKK
Sbjct: 1 MRNFSVFERFSKAFKDHPSLTRILVVSTISGGGLIAYSEANASYGANGGAVVETGTKKKK 60
Query: 61 VVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIV 120
VV+LGTGWAGTSFLKNLNN Y+VQ+ISPRNYFAFTPLLPSVTCGTVEARS+VEP+RNI
Sbjct: 61 VVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPIRNIG 120
Query: 121 RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180
RK NVD + EAECFKID +KKVYCRS Q + NGK+EF +DYDYLVIA GA++NTFN
Sbjct: 121 RK-NVDTSYLEAECFKIDPASKKVYCRSKQGLSSNGKKEFSVDYDYLVIATGAQSNTFNI 179
Query: 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAA 240
PGVEENC+FLKEVEDAQRIR+ VI+SFEKASLP LSDEERKRILHFV+VGGGPTGVEFAA
Sbjct: 180 PGVEENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGPTGVEFAA 239
Query: 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSM 300
ELHDFV EDL LYP+ K SV+ITLLEAADHIL MFDKRIT FAEEKFSRDGIDVKLGSM
Sbjct: 240 ELHDFVTEDLVSLYPRAKGSVRITLLEAADHILTMFDKRITEFAEEKFSRDGIDVKLGSM 299
Query: 301 VVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWL 360
V KV +K+I K +G GE SS+PYGM+VWSTGI +IKDFMKQ+GQ NRRALATDEWL
Sbjct: 300 VTKVNEKDISAKTKG-GEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWL 358
Query: 361 RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQV 420
RVEG+D+IYALGDCAT+NQR+VMED++AIFSKADKD SGTLT+KEFQE + DIC RYPQV
Sbjct: 359 RVEGTDNIYALGDCATINQRKVMEDVSAIFSKADKDKSGTLTLKEFQEAMDDICVRYPQV 418
Query: 421 ELYLKNKKMGDFGDLLKEAK-GDVAQDAVELNIEEFKKALSEVDSQMKNLPATAQVAAQQ 479
ELYLK+K+M DLLKEA+ DV+++ +EL IEEFK ALS+VDSQ+K LPATAQVAAQQ
Sbjct: 419 ELYLKSKRMRGIADLLKEAETDDVSKNNIELKIEEFKSALSQVDSQVKFLPATAQVAAQQ 478
Query: 480 GKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGGEQTAAQLPWDWV 539
G YLAKCF+RMEE EK+PEGP+R RG GRHRF+PFRY+HLGQFAPLGGEQTAAQLP DWV
Sbjct: 479 GAYLAKCFDRMEECEKSPEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWV 538
Query: 540 SIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSGI 583
SIG SSQWLWYSVY SK VSWRTR LVVSDW RRFIFGRDSS I
Sbjct: 539 SIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 582
>sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana
GN=NDB3 PE=2 SV=1
Length = 580
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/584 (75%), Positives = 500/584 (85%), Gaps = 5/584 (0%)
Query: 1 MRGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKK 60
MR + ++ER+S+AFHDY SLSK++V+ST+ GG LI YSEAN S YS E +K+K
Sbjct: 1 MRPFAYFERLSQAFHDYPSLSKILVVSTISGGGLIVYSEANPS---YSNNGVETKTRKRK 57
Query: 61 VVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIV 120
VV+LGTGWAG SFLK LNN SY+VQVISPRNYFAFTPLLPSVTCGTVEARS+VEP+RNI
Sbjct: 58 VVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGTVEARSVVEPIRNIA 117
Query: 121 RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180
RK+NV++ F EAECFKID +KKVYCRS Q N GK+EF +DYDYLVIA GA++NTFN
Sbjct: 118 RKQNVEMSFLEAECFKIDPGSKKVYCRSKQGVNSKGKKEFDVDYDYLVIATGAQSNTFNI 177
Query: 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAA 240
PGVEENC+FLKEVEDAQRIR VI+SFEKASLP L+++ERKR+LHFV+VGGGPTGVEFA+
Sbjct: 178 PGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRMLHFVVVGGGPTGVEFAS 237
Query: 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSM 300
ELHDFV+EDL KLYPK K+ V+ITLLEAADHIL MFDKRIT FAEEKF+RDGIDVKLGSM
Sbjct: 238 ELHDFVNEDLVKLYPKAKNLVQITLLEAADHILTMFDKRITEFAEEKFTRDGIDVKLGSM 297
Query: 301 VVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWL 360
VVKV DKEI K + GE S++PYGM+VWSTGI +IKDFMKQ+GQ NRRALATDEWL
Sbjct: 298 VVKVNDKEISAKTKA-GEVSTIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWL 356
Query: 361 RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQV 420
RVEG D+IYALGDCAT+NQR+VMEDIAAIF KADK+NSGTLT+KEF EV+ DIC+RYPQV
Sbjct: 357 RVEGCDNIYALGDCATINQRKVMEDIAAIFKKADKENSGTLTMKEFHEVMSDICDRYPQV 416
Query: 421 ELYLKNKKMGDFGDLLKEAKGDVAQD-AVELNIEEFKKALSEVDSQMKNLPATAQVAAQQ 479
ELYLK+K M DLLK+A+ + + +VEL+IEE K AL +VDSQ+K LPAT QVAAQQ
Sbjct: 417 ELYLKSKGMHGITDLLKQAQAENGSNKSVELDIEELKSALCQVDSQVKLLPATGQVAAQQ 476
Query: 480 GKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGGEQTAAQLPWDWV 539
G YLAKCF+RME EKNPEGP+R RG GRHRF+PFRY+HLGQFAPLGGEQTAAQLP DWV
Sbjct: 477 GTYLAKCFDRMEVCEKNPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWV 536
Query: 540 SIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSGI 583
SIG SSQWLWYSVY SK VSWRTR LVVSDW RRFIFGRDSS I
Sbjct: 537 SIGHSSQWLWYSVYASKQVSWRTRVLVVSDWMRRFIFGRDSSRI 580
>sp|Q9SKT7|NDB4_ARATH NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana
GN=NDB4 PE=1 SV=1
Length = 582
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/591 (68%), Positives = 478/591 (80%), Gaps = 17/591 (2%)
Query: 1 MRGYTFYERVSRAFHDYSSLSKLIVISTV-GGGSLIAYSEAN-------ASSDAYSVAPP 52
M ++FY+R S F Y S SK++++ST GGG ++ YS++N A + S P
Sbjct: 1 MSFHSFYQRASSLFKAYPSTSKILLLSTFSGGGGVLVYSDSNPLKRILHADATLDSDGNP 60
Query: 53 EMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSI 112
I+KKKVVVLG+GW+G SFL LNNP+YDVQV+SPRN+F FTPLLPSVT GTVEARSI
Sbjct: 61 ---IRKKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSI 117
Query: 113 VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172
VEP+R ++RKK + + EAEC KIDA NKK++CRS + ++L G EF MDYD L++A+G
Sbjct: 118 VEPIRGLMRKKGFE--YKEAECVKIDASNKKIHCRSKEGSSLKGTTEFDMDYDILILAVG 175
Query: 173 ARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGG 232
A+ NTFNTPGVEE+ FLKE EDA IR +VI+ FE+ASLPNL++EERK+ILHFV+VGGG
Sbjct: 176 AKPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGG 235
Query: 233 PTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292
PTGVEF+AELHDF+ +D+ K+YPKV++ KITLLEA DHILNMFDKRITAFAEEKF RDG
Sbjct: 236 PTGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDG 295
Query: 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRR 352
ID+K GSMVV VT EI TK R G+ S PYGMVVWSTGI +IKDFM+Q+GQ RR
Sbjct: 296 IDLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIKDFMQQIGQGQRR 355
Query: 353 ALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKD 412
LATDEWLRVEG D +YALGD AT+NQRRVMEDIAAIF+KADK N+GTL K+F V+KD
Sbjct: 356 VLATDEWLRVEGCDGVYALGDTATINQRRVMEDIAAIFNKADKGNTGTLKKKDFNSVVKD 415
Query: 413 ICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEEFKKALSEVDSQMKNLPAT 472
IC+RYPQVELYLK K+ + +LLK A G+ Q +NIE+FK+ALSEVDSQMKNLPAT
Sbjct: 416 ICQRYPQVELYLKKNKLKNIANLLKSANGEDTQ----VNIEKFKQALSEVDSQMKNLPAT 471
Query: 473 AQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGGEQTAA 532
AQVA+QQGKYLAKCFN+ME+ EK PEGPLRFRG GRHRFQPFRY+H G FAPLGGEQTAA
Sbjct: 472 AQVASQQGKYLAKCFNKMEKCEKKPEGPLRFRGEGRHRFQPFRYRHFGSFAPLGGEQTAA 531
Query: 533 QLPWDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSGI 583
+LP DWVSIG SSQWLWYSVY SKLVSWRTR LV+SDWTRRF+FGRDSS I
Sbjct: 532 ELPGDWVSIGHSSQWLWYSVYASKLVSWRTRMLVISDWTRRFVFGRDSSSI 582
>sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana
GN=NDB1 PE=1 SV=1
Length = 571
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/550 (64%), Positives = 444/550 (80%), Gaps = 9/550 (1%)
Query: 34 LIAYSEANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93
++AY++AN ++ KKKKVVVLGTGWAG SFLK+L+ SYDVQV+SP+NYF
Sbjct: 31 IVAYADANEEANKKEEH------KKKKVVVLGTGWAGISFLKDLDITSYDVQVVSPQNYF 84
Query: 94 AFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTN 153
AFTPLLPSVTCGTVEARSIVE VRNI +KKN +I WEA+CFKID N+KV+CR +
Sbjct: 85 AFTPLLPSVTCGTVEARSIVESVRNITKKKNGEIELWEADCFKIDHVNQKVHCRPVFKDD 144
Query: 154 LNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213
+EF + YDYL++A+GA+ NTF TPGV ENC+FLKEVEDAQRIRR VI+ FEKA LP
Sbjct: 145 PEASQEFSLGYDYLIVAVGAQVNTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILP 204
Query: 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273
L++E+R+R LHFVIVGGGPTGVEFAAELHDF+ ED+ K+YP VK+ VKITL+++ DHIL
Sbjct: 205 GLTEEQRRRKLHFVIVGGGPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHIL 264
Query: 274 NMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333
N FD+RI++FAE+KF+RDGIDV+ G V+ VTDK+I KV+ +GE S+P+G+++WSTG+
Sbjct: 265 NTFDERISSFAEQKFTRDGIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGV 324
Query: 334 APHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393
+I DFM+QVGQ RRA+AT+EWL+V G +++YA+GDCA++ QR+++ DIA IF A
Sbjct: 325 GTRPVISDFMEQVGQGGRRAVATNEWLQVTGCENVYAVGDCASIAQRKILGDIANIFKAA 384
Query: 394 DKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIE 453
D DNSGTLT++E + V+ DI RYPQVELYLK+K M DLL +++G+ + E++IE
Sbjct: 385 DADNSGTLTMEELEGVVDDIIVRYPQVELYLKSKHMRHINDLLADSEGNARK---EVDIE 441
Query: 454 EFKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQP 513
FK ALSE DSQMK LPATAQVAAQQG YLAKCFNRME+ ++ PEGP RFR G H+F+P
Sbjct: 442 AFKLALSEADSQMKTLPATAQVAAQQGAYLAKCFNRMEQCKELPEGPKRFRTGGHHQFRP 501
Query: 514 FRYQHLGQFAPLGGEQTAAQLPWDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRR 573
F+Y+H GQFAPLGG+Q AA+LP DWVS G+S+QWLWYSVY SK VSWRTRALVVSDWTRR
Sbjct: 502 FQYKHFGQFAPLGGDQAAAELPGDWVSAGKSAQWLWYSVYASKQVSWRTRALVVSDWTRR 561
Query: 574 FIFGRDSSGI 583
+IFGRDSS I
Sbjct: 562 YIFGRDSSRI 571
>sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE1 PE=1 SV=1
Length = 560
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/358 (46%), Positives = 237/358 (66%), Gaps = 9/358 (2%)
Query: 22 KLIVISTVGGGSLIAYS---EANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLN 78
K ++ S + G + ++YS EAN S+ G K+K +V+LG+GW S LKNL+
Sbjct: 73 KALLYSALAGTAYVSYSLYREANPSTQVPQSDTFPNGSKRKTLVILGSGWGSVSLLKNLD 132
Query: 79 NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKID 138
Y+V V+SPRNYF FTPLLPS GT+E +SIVEPVR I R+ + ++ ++EAE + +D
Sbjct: 133 TTLYNVVVVSPRNYFLFTPLLPSTPVGTIELKSIVEPVRTIARRSHGEVHYYEAEAYDVD 192
Query: 139 AENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQR 198
ENK + +SS N + + YDYLV+ +GA+ NTF TPGV E +FLKE+ DAQ
Sbjct: 193 PENKTIKVKSSAK---NNDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQE 249
Query: 199 IRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258
IR ++ S EKA+ + D ER R+L FV+VGGGPTGVEFAAEL D+VD+DL K P++
Sbjct: 250 IRLKIMSSIEKAASLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELS 309
Query: 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGE 318
+K+TL+EA +ILNMFDK + +A++ F + ID++L +MV KV D T G+G+
Sbjct: 310 KEIKVTLVEALPNILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKV-DATTITAKTGDGD 368
Query: 319 TSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEWLRVEGSD-SIYALGDC 374
++PYG++VW+TG AP + K+ M ++ Q +RR L D L++ G+ SI+A+GDC
Sbjct: 369 IENIPYGVLVWATGNAPREVSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDC 426
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 472 TAQVAAQQGKYLAKCFNR----------MEEAEKNPEGPLRFRGT---GRHRFQPFRYQH 518
TAQVA Q+G+YLA+ F + M A+ + E R + + + + F+Y H
Sbjct: 435 TAQVAHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSEVA-RLKNQIVKTQSQIEDFKYNH 493
Query: 519 LGQFAPLGGEQTAAQLP---WDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFI 575
G A +G ++ A L + G + W S Y + +S+R R LV DW + +
Sbjct: 494 KGALAYIGSDKAIADLAVGEAKYRLAGSFTFLFWKSAYLAMCLSFRNRVLVAMDWAKVYF 553
Query: 576 FGRDSS 581
GRDSS
Sbjct: 554 LGRDSS 559
>sp|Q07500|NDH2_YEAST External NADH-ubiquinone oxidoreductase 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDE2 PE=1 SV=1
Length = 545
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 162/362 (44%), Positives = 236/362 (65%), Gaps = 15/362 (4%)
Query: 22 KLIVISTVGGGSLIAYS---EANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLN 78
KL +T+ G ++Y E+N G+KKK++V+LGTGW S LK L+
Sbjct: 58 KLTFYTTLAGTLYVSYELYKESNPPKQVPQSTAFANGLKKKELVILGTGWGAISLLKKLD 117
Query: 79 NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKID 138
Y+V V+SPR++F FTPLLPS GT+E +SIVEPVR+I R+ ++ + EAE +D
Sbjct: 118 TSLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPVRSIARRTPGEVHYIEAEALDVD 177
Query: 139 AENKKVYCRSSQNTNLNGKEEFC--MDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDA 196
+ KKV +S ++ E F + YDYLV+++GA+ TFN PGV N NFLKE+EDA
Sbjct: 178 PKAKKVMVQS-----VSEDEYFVSSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDA 232
Query: 197 QRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256
Q IR ++++ E+AS ++D ERKR+L FV+VGGGPTGVEFAAEL D++++DL K P
Sbjct: 233 QNIRMKLMKTIEQASSFPVNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWMPD 292
Query: 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGN 316
+ +K+ L+EA +ILNMFDK + +AE+ F+RD ID+++ + VKV + + + N
Sbjct: 293 LSKEMKVILIEALPNILNMFDKTLIKYAEDLFARDEIDLQVNT-AVKVVEP-TYIRTLQN 350
Query: 317 GETSS-MPYGMVVWSTGIAPHAIIKDFMKQVG-QTNRRALATDEWLRVEGSD-SIYALGD 373
G+T++ + YGM+VW+TG P K M ++ QTNRR L ++ L + GS+ SIYA+GD
Sbjct: 351 GQTNTDIEYGMLVWATGNEPIDFSKTLMSRIPEQTNRRGLLINDKLELLGSENSIYAIGD 410
Query: 374 CA 375
C
Sbjct: 411 CT 412
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 35/135 (25%)
Query: 472 TAQVAAQQGKYLAKCFNRMEEAEK-----------------NPEGPLRFRGTGRHRFQPF 514
TAQVA Q+G+YLAK ++ + E+ E LR + + F
Sbjct: 420 TAQVAHQEGEYLAKILDKKLQIEQLEWDMLNSTDETEVSRLQKEVNLR-----KSKLDKF 474
Query: 515 RYQHLGQFAPLGGEQTAAQLPWDWVSIGRSSQWL--------WYSVYTSKLVSWRTRALV 566
Y+H+G A +G E A L +G SS L W S Y + +S R R L+
Sbjct: 475 NYKHMGALAYIGSETAIADL-----HMGDSSYQLKGMFAFLFWKSAYLAMCLSIRNRILI 529
Query: 567 VSDWTRRFIFGRDSS 581
DWT+ + GRDSS
Sbjct: 530 AMDWTKVYFLGRDSS 544
>sp|F2Z699|NDH2_YARLI External alternative NADH-ubiquinone oxidoreductase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2
PE=1 SV=1
Length = 582
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 163/373 (43%), Positives = 230/373 (61%), Gaps = 17/373 (4%)
Query: 12 RAFHDYSSLSKLIVISTVGGGSLIAYS--EANASSDAYSVAPPEMGIKKKKVVVLGTGWA 69
+ FH + SL +L +S + I Y SD P KK +VVLG+GW
Sbjct: 69 KKFHFWRSLWRLTYLSAIASLGYIGYRIYVIRNPSDQLPADP-----SKKTLVVLGSGWG 123
Query: 70 GTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICF 129
SFLK L+ +Y+V V+SPRNYF FTPLLPS GT+E RSI+EP+R I+R K + +
Sbjct: 124 SVSFLKKLDTSNYNVIVVSPRNYFLFTPLLPSCPTGTIEHRSIMEPIRGIIRHKQAECQY 183
Query: 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFC--MDYDYLVIAMGARANTFNTPGVEENC 187
EA+ KID E + V RS+ + N KEE + +DYLV+ +GA ++TF PGV+EN
Sbjct: 184 LEADATKIDHEKRIVTIRSA--VSENSKEEVIKEIPFDYLVVGVGAMSSTFGIPGVQENA 241
Query: 188 NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247
FLKE+ DAQ+IRR +++ EKA E RKR+LH V+VGGGPTGVEFAAEL DF +
Sbjct: 242 CFLKEIPDAQQIRRTLMDCIEKAQFEK-DPEVRKRLLHTVVVGGGPTGVEFAAELQDFFE 300
Query: 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK 307
+DL K P ++D K+TL+EA ++L F K++ + E+ FS + I + +MV V +
Sbjct: 301 DDLRKWIPDIRDDFKVTLVEALPNVLPSFSKKLIDYTEKTFSDEKISILTKTMVKSVDEN 360
Query: 308 EIF---TKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV--GQTNRRALATDEWLRV 362
I TK G ET MPYG +VW+TG ++++ M ++ + +RR L +E+L V
Sbjct: 361 VIRAEQTKGDGTKETLEMPYGTLVWATGNTVRPVVRELMSKIPAQKGSRRGLLVNEYLVV 420
Query: 363 EGSDSIYALGDCA 375
EG++ I+ALGDC+
Sbjct: 421 EGTEGIWALGDCS 433
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 31/150 (20%)
Query: 463 DSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQ---------- 512
D TAQVA+Q+G YLA N + + E H F
Sbjct: 431 DCSATKYAPTAQVASQEGSYLANLLNGIAKTEDLNNEITNLEKQSEHTFDEQERKNIFAQ 490
Query: 513 ---------------PFRYQHLGQFAPLGGEQTAAQLPWD------WVSIGRSSQWLWYS 551
PF Y H G A +G ++ A L ++ W S G + + W S
Sbjct: 491 LESKSRKLRRSRAMLPFEYSHQGSLAYIGSDRAVADLSFNFWGIMNWSSGGTMTYYFWRS 550
Query: 552 VYTSKLVSWRTRALVVSDWTRRFIFGRDSS 581
Y S S R + LV DW + +FGRD S
Sbjct: 551 AYVSMCFSMRNKILVCIDWMKVRVFGRDIS 580
>sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum
GN=DDB_G0270104 PE=3 SV=2
Length = 451
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/326 (45%), Positives = 210/326 (64%), Gaps = 14/326 (4%)
Query: 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEP 115
I+ +K+++LG GW SFLKNLN+ YD+ VISPRN+F FTPLL S GT+E RSI EP
Sbjct: 37 IENEKLIILGCGWGSYSFLKNLNSIKYDITVISPRNHFLFTPLLTSSAVGTLEFRSIAEP 96
Query: 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175
VR R N + + +A I+ EN V +S+ + ++ F M YD LVI +G+R
Sbjct: 97 VRT-TRDIN-EFKYIQASVTSINPENNSVLVKST----FHNEKPFEMKYDKLVIGVGSRN 150
Query: 176 NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTG 235
NTF GVEEN NFLKE+ A+ IR+ +IE FE+ASLP++S EER+R+L FVIVGGG TG
Sbjct: 151 NTFGIKGVEENANFLKELHHAREIRQKIIECFERASLPDVSTEERERLLSFVIVGGGATG 210
Query: 236 VEFAAELHDFVDEDLFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294
+EF +EL+DF EDL +L+P V + VKI LLEA+ IL+ FD+++ A F GID
Sbjct: 211 IEFTSELNDFFSEDLSRLFPFVPVNEVKIILLEASGKILSTFDQKLVKKALINFRNSGID 270
Query: 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
V+ S V +V + + NG+ +PYG++VWSTGI H ++K+ + +R +
Sbjct: 271 VRTHSSVKEVLKDYV---ILDNGD--RIPYGLLVWSTGIGQHPLVKNSSFEKDSHDR--I 323
Query: 355 ATDEWLRVEGSDSIYALGDCATVNQR 380
D+ LRV+ ++++ GDCA V +
Sbjct: 324 IVDDHLRVKNYSNVFSFGDCANVENK 349
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 467 KNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLG 526
KN P TAQVA+Q YLAK FN +E+ NP +PF ++ LG A G
Sbjct: 349 KNYPPTAQVASQSAVYLAKEFNNLEKLNPNPP-------------KPFAFKFLGLLAYTG 395
Query: 527 GEQTAAQLPWDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSS 581
+ Q + +S G W S Y ++L S R++ V DW R IFGRD S
Sbjct: 396 KKSGILQTDFFDLS-GFIGFITWRSAYLTRLGSLRSKIQVPFDWMRTLIFGRDIS 449
>sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3A11.07 PE=3 SV=1
Length = 551
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 201/321 (62%), Gaps = 6/321 (1%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
KK +VVLG GW TS L+ ++ ++V V+SPRNYF FT LLPS G+V RSIV+P+R
Sbjct: 91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIR 150
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
++R K+ + F+EAEC +DA+ K ++ + + ++ ++E + YDYLV + GA T
Sbjct: 151 YMLRHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQE--IKYDYLVCSHGAETQT 208
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVE 237
FN PG+ E FLKE+ DAQ+IR ++ E+A +L E R+R +H V+VGGGPTG+E
Sbjct: 209 FNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGME 268
Query: 238 FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKL 297
FA E+ DF+++DL YP++ D +TL+EA +L MF ++ + + F I ++
Sbjct: 269 FAGEMADFIEDDLKSWYPELADDFAVTLVEALPSVLPMFSAKLRDYTQSLFDSSHIKIRT 328
Query: 298 GSMVVKVTDKEIFTKVR---GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVGQTNRRA 353
+ + KVT + I +V+ G+ + +PYG++VW+ G + K M+ Q NRR
Sbjct: 329 NTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAGGNRARPLTKKLMEGSEEQNNRRG 388
Query: 354 LATDEWLRVEGSDSIYALGDC 374
L DE+L+++G I+ALGDC
Sbjct: 389 LVVDEYLKLKGYKDIFALGDC 409
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 450 LNIEEFKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTG-- 507
L ++ +K + D TAQVA+QQG YL + FN++ N E P R
Sbjct: 395 LKLKGYKDIFALGDCTHTAYAPTAQVASQQGAYLGQLFNKL--GSLNFEKPSEDRHIALG 452
Query: 508 --------------RHR----FQPFRYQHLGQFAPLGGEQTAA--QLPW---DWVSIGRS 544
+H F PF+Y H G A +G E+ A ++PW + G
Sbjct: 453 DEMDSSTLISLANEKHASTKVFLPFKYSHQGSLAYVGHEKAIADIEVPWFGKQLHASGAL 512
Query: 545 SQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSGI 583
+ + W SVY S+L S R R V DW R +FGRD S +
Sbjct: 513 AFYFWRSVYLSELYSLRNRTNVTLDWIRVKLFGRDISSL 551
>sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC947.15c PE=3 SV=1
Length = 551
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 207/380 (54%), Gaps = 18/380 (4%)
Query: 2 RGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKKV 61
R +F+ R SSLS L ++ + S S G+ KK +
Sbjct: 44 RNKSFFSRALEMAEVTSSLSMLGAVALFQSLRRLNNSSPKGKS----------GVPKKNI 93
Query: 62 VVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVR 121
VVLG+GW + +KNL+ Y++ ++SPR++F FTP+LPS T GT+ SI EP+ + +
Sbjct: 94 VVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIVALFK 153
Query: 122 KKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181
K +AEC ID KKV R + N GKE + YD LV A+GA TF
Sbjct: 154 GKIDPSNIHQAECTAIDTSAKKVTIRGTTEAN-EGKEA-VIPYDTLVFAIGAGNQTFGIQ 211
Query: 182 GVEENCNFLKEVEDAQRIRRNVIESFEKASL-PNLSDEERKRILHFVIVGGGPTGVEFAA 240
GV ++ FLKE DA+++ + E E+ +LS EER R+LH +VGGGPTG+EFAA
Sbjct: 212 GVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGPTGMEFAA 271
Query: 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSM 300
E+ DF+D D+ ++P+++ + +TL+EAA +L MF K + + E F I + ++
Sbjct: 272 EMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTENLFKNLNIKIMTKTV 331
Query: 301 VVKVTDKEIF---TKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTN--RRALA 355
V V +K + T G+ +PYGM+VW+ GI + + M + + + R+ L
Sbjct: 332 VKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLMSSIPEQSGARKGLI 391
Query: 356 TDEWLRVEGSDSIYALGDCA 375
DE+ RV+G +YA+GDCA
Sbjct: 392 VDEFFRVKGVPEMYAVGDCA 411
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 22/138 (15%)
Query: 463 DSQMKNLPATAQVAAQQGKYLAKCFN----------RMEEAEKN---PEGPLRFRGTGRH 509
D LPATAQVA QQG +LAK N R++ EK E P + G +
Sbjct: 409 DCAFSGLPATAQVANQQGAWLAKNLNVEGKKFALHERIQALEKQLGEKEAPSQVAGLKQQ 468
Query: 510 ----RFQPFRYQHLGQFAPLGGEQTAAQLPWDWVS-----IGRSSQWLWYSVYTSKLVSW 560
+ +PF+Y H G A +G E+ A L ++ G W Y ++L+S
Sbjct: 469 VEQLKLEPFKYHHQGALAYVGDEKAIADLKLPFMKKMLPLQGIVGHTFWRLAYLNELISA 528
Query: 561 RTRALVVSDWTRRFIFGR 578
R++ +V+ DW + +FGR
Sbjct: 529 RSQFMVLIDWLKTRLFGR 546
>sp|P32340|NDI1_YEAST Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NDI1 PE=1 SV=1
Length = 513
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 206/333 (61%), Gaps = 15/333 (4%)
Query: 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVR 117
K V++LG+GW SFLK+++ Y+V +ISPR+YF FTPLLPS GTV+ +SI+EP+
Sbjct: 53 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIV 112
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRS----------SQNTNLNGKEEFCMDYDYL 167
N KK ++ ++EAE I+ + V +S + L+ E + YDYL
Sbjct: 113 NFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYL 172
Query: 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFV 227
+ A+GA NTF PGV + +FLKE+ ++ IRR + EKA+L D ER+R+L V
Sbjct: 173 ISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIV 232
Query: 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEK 287
+VGGGPTGVE A EL D+V +DL K P + + V+I L+EA +LNMF+K+++++A+
Sbjct: 233 VVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSH 292
Query: 288 FSRDGIDVKLGSMVVKVTDKEIFTKVR---GNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344
I V L + V KV +K++ K + G ++PYG ++W+TG +I D K
Sbjct: 293 LENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFK 352
Query: 345 QVGQTN--RRALATDEWLRVEGSDSIYALGDCA 375
++ + N +R LA +++L+V+GS++I+A+GD A
Sbjct: 353 KIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNA 385
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 463 DSQMKNLPATAQVAAQQGKYLAKCFNRMEE--------AEKNPEGPLRFRGTGRHRFQPF 514
D+ LP TAQVA Q+ +YLAK F++M + + + + L F + F+PF
Sbjct: 383 DNAFAGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFE---ENNFKPF 439
Query: 515 RYQHLGQFAPLGGEQTAAQLPWD----WVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDW 570
+Y LG A LG E+ A + + G + +LW +Y S ++S R+R V DW
Sbjct: 440 KYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDW 499
Query: 571 TRRFIFGRD 579
+ F RD
Sbjct: 500 IKLAFFKRD 508
>sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis
thaliana GN=NDA2 PE=1 SV=1
Length = 508
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 198/332 (59%), Gaps = 12/332 (3%)
Query: 47 YSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT 106
YS PP +K +VVVLG+GWAG +K ++ YDV +SPRN+ FTPLL S GT
Sbjct: 60 YSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGT 119
Query: 107 VEARSIVEPVRNI--VRKKNVDICFWEAECFKIDAENKKVYCRS-SQNTNLNGKEEFCMD 163
+E RS+ EP+ I + F+ A C ++DA+ +V+C + + N +F +
Sbjct: 120 LEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIA 179
Query: 164 YDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223
YD LVIA GA A+TF GV EN FL+EV AQ IRR ++ + + P +S EE++R+
Sbjct: 180 YDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRL 239
Query: 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAF 283
LH V+VGGGPTGVEF+ EL DF+ +D+ + Y VKD + +TL+EA D IL+ FD R+ +
Sbjct: 240 LHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARD-ILSSFDDRLRRY 298
Query: 284 AEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFM 343
A ++ ++ G+ G +V V +++ + + +PYG++VWSTG+ P ++
Sbjct: 299 AIKQLNKSGVRFVRG-IVKDVQSQKLILD-----DGTEVPYGLLVWSTGVGPSPFVRSLG 352
Query: 344 KQVGQTNRRALATDEWLRVEGSDSIYALGDCA 375
T R + DEW+RV ++A+GDC+
Sbjct: 353 LPKDPTGR--IGIDEWMRVPSVQDVFAIGDCS 382
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 468 NLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGG 527
LPA AQVA ++GKYLA N + + + G PF Y+HLG A +G
Sbjct: 392 TLPALAQVAEREGKYLANLLNAIGKGNGGRANSAKEIELG----VPFVYKHLGSMATIGR 447
Query: 528 EQTAAQLPWDWVSIGRS-----SQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSG 582
+ L + G S S ++W S Y ++++SWR R V +W F+FGRD S
Sbjct: 448 YKALVDLRESKDAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINWFTTFVFGRDISR 507
Query: 583 I 583
I
Sbjct: 508 I 508
>sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis
thaliana GN=NDA1 PE=2 SV=1
Length = 510
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 208/332 (62%), Gaps = 17/332 (5%)
Query: 49 VAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVE 108
+AP + G +K +V+VLG+GWAG LK ++ YDV +SPRN+ FTPLL S GT+E
Sbjct: 65 LAPTKEG-EKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLE 123
Query: 109 ARSIVEPVRNI--VRKKNVDICFWEAECFKIDAENKKVYCRS-SQNTNLNGKEEFCMDYD 165
RS+ EP+ I + ++ A C K+DA+N +V+C + ++ ++ +F + YD
Sbjct: 124 FRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYD 183
Query: 166 YLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILH 225
LV+A GA A+TF GV EN FL+EV AQ IRR ++ + + +P + ++E+KR+LH
Sbjct: 184 KLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLH 243
Query: 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285
V+VGGGPTGVEF+ EL DF+ +D+ + Y VKD +++TL+EA D IL+ FD R+ +A
Sbjct: 244 CVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARD-ILSSFDDRLRHYAI 302
Query: 286 EKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK--DFM 343
++ ++ G+ + G +V +V +++ + + +PYG +VWSTG+ P + ++ DF
Sbjct: 303 KQLNKSGVKLVRG-IVKEVKPQKLILD-----DGTEVPYGPLVWSTGVGPSSFVRSLDFP 356
Query: 344 KQVGQTNRRALATDEWLRVEGSDSIYALGDCA 375
K G + DEW+RV ++A+GDC+
Sbjct: 357 KDPGGR----IGIDEWMRVPSVQDVFAIGDCS 384
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 468 NLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGG 527
LPA AQVA ++GKYLA FN M +A + G +PF Y+HLG A +G
Sbjct: 394 TLPALAQVAEREGKYLANLFNVMGKAGGGRANSAKEMELG----EPFVYKHLGSMATIGR 449
Query: 528 EQTAAQLPWDWVSIGRS-----SQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSG 582
+ L G S S ++W S Y +++VSWR R V +W F+FGRD S
Sbjct: 450 YKALVDLRESKEGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISR 509
Query: 583 I 583
I
Sbjct: 510 I 510
>sp|Q49W80|Y1834_STAS1 NADH dehydrogenase-like protein SSP1834 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1834 PE=3 SV=1
Length = 402
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ +V +I+ +Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTITKLQKQISADEAEVTLINKNDYHYEATWLHEASAGTISY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++V K V+ F +AE KID KKV + D+D LV+
Sbjct: 61 EDLLYPVESVVNKDKVN--FVKAEVTKIDRNAKKVETDAG-----------IFDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
++G + TF G+++ ++ V A+++ R++ + F + D+ + L ++
Sbjct: 108 SLGFESETFGIKGMKDYAFQIENVLTARKLSRHIEDKFANYASSKQKDD---KDLAIIVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y + VKIT +EAA +L MF + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCNKYGVEQSKVKITCVEAAPKMLPMFSDELVNHAVNYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+G+ +V +K KV N E + VVW+ G+ ++++ + V
Sbjct: 224 NKGVEFKIGTPIVAANEKGFVVKV--NDEEQQLEANTVVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L +EG D I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTIEGYDDIFVIGDCS 304
>sp|Q2YWP9|Y807_STAAB NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1
Length = 402
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKTISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q8NXG0|Y823_STAAW NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus
(strain MW2) GN=MW0823 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q6GAY5|Y811_STAAS NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0811 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q5HHE4|Y944_STAAC NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus
(strain COL) GN=SACOL0944 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q99VE0|Y941_STAAM NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0941 PE=1 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q6GIE7|Y903_STAAR NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0903 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q2FZV7|Y878_STAA8 NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q2FID4|Y844_STAA3 NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q7A6J4|Y802_STAAN NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus
(strain N315) GN=SA0802 PE=1 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K ++ ++ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV ++++K V+ F +AE KID + KKV TN + D+D LV+
Sbjct: 61 EDVLYPVESVLKKDKVN--FVQAEVTKIDRDAKKV------ETN-----QGIYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++++ ++ V A+ + R++ + F + S E+ L ++
Sbjct: 108 ALGFVSETFGIEGMKDHAFQIENVITARELSRHIEDKFANYAA---SKEKDDNDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TGVEF EL D + E L Y ++ VKIT +EAA +L MF + + A
Sbjct: 165 GAGFTGVEFLGELTDRIPE-LCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V +GE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--DGEKQQLNAGTSVWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L + G D+I+ +GDC+
Sbjct: 279 KRGRIVTKQDLTINGYDNIFVIGDCS 304
>sp|Q8CPV5|Y635_STAES NADH dehydrogenase-like protein SE_0635 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0635 PE=3 SV=1
Length = 402
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 161/326 (49%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K L+ + ++ +I+ Y + L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV V K V+ F AE KID K+V ++ D+D LV+
Sbjct: 61 EDLLYPVEKTVNKNKVN--FVVAEVTKIDRNAKRVET-----------DKGVYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++E+ ++ V ++++ R++ + F + S E+ + L ++
Sbjct: 108 ALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANYAA---SKEKDDKDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TG+EF EL D + E L Y + VK+T +EAA +L MF + ++A +
Sbjct: 165 GAGFTGIEFLGELTDRIPE-LCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLVSYAVKYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V NGE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--NGEKQQLEAGTSVWTAGVRGSHLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + + L +EG + I+ +GDC+
Sbjct: 279 KRGRIINKQDLTIEGHNDIFVIGDCS 304
>sp|Q5HQM1|Y527_STAEQ NADH dehydrogenase-like protein SERP0527 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0527 PE=3
SV=1
Length = 402
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 161/326 (49%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K L+ + ++ +I+ Y + L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLINKNEYHYESTWLHEASAGTINY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ PV V K V+ F AE KID K+V ++ D+D LV+
Sbjct: 61 EDLLYPVEKTVNKDKVN--FVVAEVTKIDRNAKRVET-----------DKGVYDFDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G++E+ ++ V ++++ R++ + F + S E+ + L ++
Sbjct: 108 ALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANYAA---SKEKDDKDLSILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TG+EF EL D + E L Y + VK+T +EAA +L MF + ++A +
Sbjct: 165 GAGFTGIEFLGELTDRIPE-LCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLVSYAVKYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K +V NGE + G VW+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVEV--NGEKQQLEAGTSVWTAGVRGSHLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + + L +EG + I+ +GDC+
Sbjct: 279 KRGRVINKQDLTIEGHNDIFVIGDCS 304
>sp|Q4L4V6|Y2010_STAHJ NADH dehydrogenase-like protein SH2010 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1
Length = 402
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 157/326 (48%), Gaps = 26/326 (7%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M +KKV+VLG G+AG T K L+ D+ +I+ Y L + GT+
Sbjct: 1 MAQDRKKVLVLGAGYAGLQTVTKLQKELSADEADITLINKNKYHYEATWLHEASAGTLNY 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
++ P+ +++++ V F AE KID KKV DYD LV+
Sbjct: 61 EDLIYPIESVIKEDKVK--FINAEVTKIDRNAKKVETNHG-----------IYDYDILVV 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
A+G + TF G+++ ++ +E A+++ R++ + F + S E+ + L ++
Sbjct: 108 ALGFESETFGINGMKDYAFQIENIETARKLSRHIEDKFANYA---ASKEKDDKDLAILVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TG+EF EL + + E L Y ++ V++T +EAA +L MF + +A
Sbjct: 165 GAGFTGIEFLGELTERIPE-LCNKYGVDQNKVRVTCVEAAPKMLPMFSDELVNYAVNYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
G++ K+ + +V +K K+ N + + G +W+ G+ ++++ + V
Sbjct: 224 DRGVEFKIATPIVACNEKGFVVKI--NDQEQQLEAGTAIWAAGVRGSKLMEESFEGV--- 278
Query: 350 NRRALATDEWLRVEGSDSIYALGDCA 375
R + T + L +EG D I+ +GD +
Sbjct: 279 KRGRIVTKQDLTIEGHDDIFVIGDVS 304
>sp|P00393|DHNA_ECOLI NADH dehydrogenase OS=Escherichia coli (strain K12) GN=ndh PE=1
SV=2
Length = 434
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 146/288 (50%), Gaps = 26/288 (9%)
Query: 97 PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVY---CRSSQNTN 153
PLL V G+++ V+ + + +N F ID E K + R +
Sbjct: 49 PLLHEVATGSLDEG--VDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGEL 106
Query: 154 LNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213
L + + YD LV+A+G+ +N FNTPGV+ENC FL A+R + ++ F K S
Sbjct: 107 LVPERKIA--YDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYS-A 163
Query: 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV-KDSVKITLLEAADHI 272
NL + I IVGGG TGVE +AELH+ V + Y + +++ +TL+EA + I
Sbjct: 164 NLGANGKVNI---AIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERI 220
Query: 273 LNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTG 332
L RI+A A + ++ G+ V +MV + + TK +GE + ++VW+ G
Sbjct: 221 LPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTK---DGE--YIEADLMVWAAG 275
Query: 333 I-APHAIIKDFMKQVG--QTNR-RALATDEWLRVEGSDSIYALGDCAT 376
I AP DF+K +G +TNR L + L+ IYA+GDCA+
Sbjct: 276 IKAP-----DFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCAS 318
>sp|P44856|DHNA_HAEIN NADH dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=ndh PE=3 SV=1
Length = 444
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 21/229 (9%)
Query: 164 YDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESF----EKASLPNLSDEE 219
YDYLVIA+G+++N FNT GV +NC FL + A R + ++E F E +L ++ +EE
Sbjct: 111 YDYLVIAIGSKSNDFNTKGVADNCIFLDSSKQALRFQHKLLELFLKFSENRALDDIGEEE 170
Query: 220 RKRIL------HFVIVGGGPTGVEFAAELHDFVDEDLFKL-YPKVKDS-VKITLLEAADH 271
K+ L + IVGGG TGVE AEL+ EDL Y K+ S +++TL+EA
Sbjct: 171 FKQKLVDENKVNIAIVGGGATGVELTAELYH-AAEDLSSYGYGKIDSSCLQVTLVEAGTR 229
Query: 272 ILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWST 331
+L + ++A ++ G +V+L +M+ + + TK G + ++VW+
Sbjct: 230 LLPALPENLSAAVLDELKEMGTNVQLNTMITEAQPNTLITKDGG-----EIKADLIVWAA 284
Query: 332 GIAPHAIIKDF-MKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQ 379
G+ + + F ++ + N+ L + L+ DSI+A+GDCA + Q
Sbjct: 285 GVRASTVTQQFDGLEINRINQ--LVVKDTLQTTVDDSIFAIGDCAALIQ 331
>sp|O05267|YUMB_BACSU NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain
168) GN=yumB PE=3 SV=1
Length = 406
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 27/327 (8%)
Query: 54 MGIKKKKVVVLGTGWAG----TSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEA 109
M + K K+V+LG G+ G T K + D+ +++ NY T + + GT+
Sbjct: 1 MALNKPKIVILGAGYGGLMTVTRLTKYVGPNDADITLVNKHNYHYETTWMHEASAGTLHH 60
Query: 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
+++++ + V+ + KID KKV + + + YDYLVI
Sbjct: 61 DRCRYQIKDVINQSRVNFVQDTVKAIKID--EKKVVLANGE-----------LQYDYLVI 107
Query: 170 AMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIV 229
+GA TF G++E + + ++ +R ++ F + N E+R L V+
Sbjct: 108 GLGAVPETFGIKGLKEYAFPIANINTSRLLREHIELQF---ATYNTEAEKRPDRLTIVVG 164
Query: 230 GGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289
G G TG+EF EL V E L K Y + V+I +EAA +L FD + +A
Sbjct: 165 GAGFTGIEFLGELAARVPE-LCKEYDVDRSLVRIICVEAAPTVLPGFDPELVDYAVHYLE 223
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
+G++ K+G+ V + T + + + + E + VVW+ G+ H I+ ++ G
Sbjct: 224 ENGVEFKIGTAVQECTPEGVRVG-KKDEEPEQIKSQTVVWAAGVRGHPIV----EEAGFE 278
Query: 350 NRRA-LATDEWLRVEGSDSIYALGDCA 375
N R + + LR G D+++ LGD +
Sbjct: 279 NMRGRVKVNPDLRAPGHDNVFILGDSS 305
>sp|Q58065|NAOX_METJA Putative NADH oxidase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0649 PE=3 SV=2
Length = 448
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 144/326 (44%), Gaps = 50/326 (15%)
Query: 60 KVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFTPL-LPSVTCGTVEARS--IVE 114
+ +++G+G AG + + N ++ VI+ A++P +P V G +++ I+
Sbjct: 2 RAIIIGSGAAGLTTASTIRKYNKDMEIVVITKEKEIAYSPCAIPYVIEGAIKSFDDIIMH 61
Query: 115 PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174
+ R++N+DI E +D++N K+ C EF M+YDYLV+A GA
Sbjct: 62 TPEDYKRERNIDI-LTETTVIDVDSKNNKIKCVDKDGN------EFEMNYDYLVLATGAE 114
Query: 175 ANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGP 233
G + + F ++ +ED + I + + E+ K +VG G
Sbjct: 115 PFIPPIEGKDLDGVFKVRTIEDGRAILKYIEENGCK---------------KVAVVGAGA 159
Query: 234 TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DKRITAFAEEKFSRDG 292
G+E A L + + ++E A +L F D + ++ ++G
Sbjct: 160 IGLEMAYGLK--------------CRGLDVLVVEMAPQVLPRFLDPDMAEIVQKYLEKEG 205
Query: 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG-QTNR 351
I V L + K+ KE V +G+ + MV+ +TG+ P+ + K+ G + +
Sbjct: 206 IKVMLSKPLEKIVGKEKVEAVYVDGKLYDV--DMVIMATGVRPNI---ELAKKAGCKIGK 260
Query: 352 RALATDEWLRVEGSDSIYALGDCATV 377
A+ +E ++ +IYA+GDC V
Sbjct: 261 FAIEVNEKMQTS-IPNIYAVGDCVEV 285
>sp|P80861|YJLD_BACSU NADH dehydrogenase-like protein YjlD OS=Bacillus subtilis (strain
168) GN=yjlD PE=1 SV=3
Length = 392
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 32/322 (9%)
Query: 59 KKVVVLGTGWAGT----SFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVE 114
K +V+LG G+ G + K+ V V++ L + G V +++
Sbjct: 3 KHIVILGAGYGGVLSALTVRKHYTKEQARVTVVNKYPTHQIITELHRLAAGNVSEKAVAM 62
Query: 115 PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174
P+ + + K++D+ E F +D KK + +T + YD LV+ +G+
Sbjct: 63 PLEKLFKGKDIDLKIAEVSSFSVD---KKEVALADGST---------LTYDALVVGLGSV 110
Query: 175 ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESF-EKASLPNLSDEERKRILHFVIVGGGP 233
F PG+EEN LK DA ++ ++V + E + N +D +
Sbjct: 111 TAYFGIPGLEENSMVLKSAADANKVFQHVEDRVREYSKTKNEADATILIGGGGLTG---- 166
Query: 234 TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGI 293
VE EL D + +L K Y +K+ L+EA IL + + A + G+
Sbjct: 167 --VELVGELADIM-PNLAKKYGVDHKEIKLKLVEAGPKILPVLPDDLIERATASLEKRGV 223
Query: 294 DVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
+ G V V I K + S + VW+ G+ + ++ + +V NR
Sbjct: 224 EFLTGLPVTNVEGNVIDLK-----DGSKVVANTFVWTGGVQGNPLVGESGLEV---NRGR 275
Query: 354 LATDEWLRVEGSDSIYALGDCA 375
+++L+ + ++ GD A
Sbjct: 276 ATVNDFLQSTSHEDVFVAGDSA 297
>sp|O32117|YUTJ_BACSU NADH dehydrogenase-like protein YutJ OS=Bacillus subtilis (strain
168) GN=yutJ PE=3 SV=2
Length = 355
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/323 (21%), Positives = 132/323 (40%), Gaps = 53/323 (16%)
Query: 59 KKVVVLGTGWAGTSFLKNL--NNPSYDVQV--ISPRNYFAFTPLLPSVTCGTVEARSIVE 114
KK+V++G G+ L L N DV + I Y ++ GT+ I
Sbjct: 2 KKLVLIGGGYGNMRVLHRLLPNQLPDDVSITLIDRNPYHCLKTEYYALAAGTISDHHIR- 60
Query: 115 PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174
+ +D+ + + ID K+V + + + YD +I +G
Sbjct: 61 --VSFPEHPRLDVQY--GDITSIDIVQKQVLFQDRE----------PISYDDAIIGLGCE 106
Query: 175 ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPT 234
N PG E ++ ++ ++ E+++K L NLS IVG G +
Sbjct: 107 DKYHNVPGAPEFTYSIQTIDQSR-------ETYQK--LNNLSANAT-----VAIVGAGLS 152
Query: 235 GVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294
GVE A+EL + +D + I L + + IL+ F +R++ + ++ F G+
Sbjct: 153 GVELASELRE------------SRDDLNIILFDRGNLILSSFPERLSKYVQKWFEEHGVR 200
Query: 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
+ + + KV + ++ + +VW+ GI P+ +++D + R L
Sbjct: 201 IINRANITKVEEGVVYN------HDDPISADAIVWTAGIQPNKVVRDLDVEKDAQGRIVL 254
Query: 355 ATDEWLRVEGSDSIYALGDCATV 377
L G + +Y +GDCA++
Sbjct: 255 TPHHNL--PGDEHLYVVGDCASL 275
>sp|Q9UYU5|CDR_PYRAB Coenzyme A disulfide reductase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB14120 PE=3 SV=1
Length = 446
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 156/356 (43%), Gaps = 58/356 (16%)
Query: 79 NPSYDVQVISPRNYFAFTPL-LPSVTCGTVEARSIVE-PVRNIVRKKNVDICFWEAECFK 136
P +DV+V + + P +P V G ++ P ++K+ +D+ AE +
Sbjct: 30 KPEWDVKVFEATEWVSHAPCGIPYVVEGISPTEKLMHYPPEVFIKKRGIDLHL-NAEVIE 88
Query: 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVE-D 195
+D Y R + +G++ + ++DYLV A GA GV+ F ++ D
Sbjct: 89 VDTG----YVRVREK---DGEKSY--EWDYLVFANGASPQVPAIEGVDLKGVFTADLPPD 139
Query: 196 AQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255
A IR + E+ R+ VIVGGG G+E A
Sbjct: 140 AVAIREYM---------------EKNRVEDVVIVGGGYIGLEMAEAF------------- 171
Query: 256 KVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVR 314
V ++T++ + IL FDK +T EEK + ++++L +V+++ K+ KV
Sbjct: 172 -VAQGKRVTMIVRGERILRRSFDKEVTDIIEEKLKQH-VNLRLQEIVLRIEGKDRVEKVV 229
Query: 315 GN-GETSSMPYGMVVWSTGIAPHA-IIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALG 372
+ GE + +V+ +TGI P+ + + ++G+T A+ T+E ++ +++YA G
Sbjct: 230 TDAGEYRA---DLVILATGIKPNIELARQLGVRIGETG--AIWTNEKMQTS-VENVYAAG 283
Query: 373 DCA----TVNQRRVMEDIAAIFSKADKDNSGTLTVKE--FQEVIKDICERYPQVEL 422
D A + RRV +A +K + KE F V+ ++ VE+
Sbjct: 284 DVAETKHVITGRRVWVPLAPPGNKMGYVAGSNIAGKEIHFPGVLGTTVTKFLDVEI 339
>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1
Length = 422
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 131/329 (39%), Gaps = 61/329 (18%)
Query: 60 KVVVLGTGWAGTSFLKNLNNPSYD--VQVISPRNYFA--FTPLLPSVTCGTVEARSIVEP 115
VV++GTG AG L ++ ++++ PL + G A S+
Sbjct: 6 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 65
Query: 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175
+ +N+ + + I+ + ++V + +DYD LV+A G R
Sbjct: 66 TPDAYAAQNIQL-LGGTQVTAINRDRQQVILSDGR----------ALDYDRLVLATGGRP 114
Query: 176 NTFNTP----GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGG 231
G N +L+ +EDA+ IRR +I V++GG
Sbjct: 115 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADN-----------------RLVVIGG 157
Query: 232 GPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSR 290
G G+E AA +K ++ +TLL+ A +L + ++AF E
Sbjct: 158 GYIGLEVAAT--------------AIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE 203
Query: 291 DGIDVKLGSMVVKV---TDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG 347
G+D++ G+ V TD++ T V + + +P +V+ G+ P+ + G
Sbjct: 204 AGVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGTRLPADLVIAGIGLIPNC---ELASAAG 259
Query: 348 QTNRRALATDEWLRVEGSDS-IYALGDCA 375
+ +E ++ SD I A+GDCA
Sbjct: 260 LQVDNGIVINEHMQT--SDPLIMAVGDCA 286
>sp|B5Z372|NORW_ECO5E Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=norW PE=3 SV=1
Length = 377
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 133/324 (41%), Gaps = 56/324 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVR 117
+V++G+G+A +KN+ + S + +I+ + + P L V A +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDASIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
++ + F + IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLLLFPQTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAFV 113
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVE 237
PG E + + Q R A L D R +IVGGG G E
Sbjct: 114 PPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGSE 155
Query: 238 FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDVK 296
A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 156 LA---MDFC-----------RAGKMVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLL 201
Query: 297 LGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R +
Sbjct: 202 LKSQLQGLEKTDSGILATL---DHQRSIEVDAVIAATGLRPETALA---RRAGLTINRGV 255
Query: 355 ATDEWLRVEGSDSIYALGDCATVN 378
D +L+ +D IYALGDCA +N
Sbjct: 256 CVDSYLQTSNAD-IYALGDCAEIN 278
>sp|Q8X850|NORW_ECO57 Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
O157:H7 GN=norW PE=3 SV=1
Length = 377
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 133/324 (41%), Gaps = 56/324 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVR 117
+V++G+G+A +KN+ + S + +I+ + + P L V A +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDASIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 118 NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177
++ + F + IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLLLFPQTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAFV 113
Query: 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVE 237
PG E + + Q R A L D R +IVGGG G E
Sbjct: 114 PPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGSE 155
Query: 238 FAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDVK 296
A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 156 LA---MDFC-----------RAGKMVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLL 201
Query: 297 LGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRAL 354
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R +
Sbjct: 202 LKSQLQGLEKTDSGILATL---DHQRSIEVDAVIAATGLRPETALA---RRAGLTINRGV 255
Query: 355 ATDEWLRVEGSDSIYALGDCATVN 378
D +L+ +D IYALGDCA +N
Sbjct: 256 CVDSYLQTSNAD-IYALGDCAEIN 278
>sp|Q8U1M0|CDR_PYRFU Coenzyme A disulfide reductase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1186 PE=3 SV=1
Length = 442
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 143/327 (43%), Gaps = 52/327 (15%)
Query: 56 IKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFTPL-LPSVTCGTVEARSI 112
++KKKVV++G G AG S + P +DV+V + + P +P V G +
Sbjct: 1 MEKKKVVIIGGGAAGMSAASRVKRLRPEWDVKVFEATEWVSHAPCGIPYVVEGIAPKEKL 60
Query: 113 VE-PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171
+ P ++K+ +D+ +AE +++ Y R +N EE ++DYLV A
Sbjct: 61 MHYPPEVFIKKRGIDLHL-KAEVIEVETG----YVRVREN-----GEEKSYEWDYLVFAN 110
Query: 172 GARANTFNTPGVEENCNFLKEV-EDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVG 230
GA GV+ F ++ DA I + E+ ++ VI+G
Sbjct: 111 GASPQIPEIEGVDLPGVFTADLPPDAVAITEYM---------------EKNKVEDVVIIG 155
Query: 231 GGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFS 289
G +E A V +TL+ ++ +L FDK IT EEK
Sbjct: 156 TGYIALEMAEAF--------------VTRGKNVTLIGRSERVLRKTFDKEITDIVEEKL- 200
Query: 290 RDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHA-IIKDFMKQVGQ 348
R ++++L + + +E KV +G +V+ +TGI P+ + K ++G+
Sbjct: 201 RQHLNLRLHEKTLSIEGRERVEKVITDG--GEYKADLVIIATGIKPNVELAKQLGVKIGE 258
Query: 349 TNRRALATDEWLRVEGSDSIYALGDCA 375
T A+ T+E ++ +++YA GD A
Sbjct: 259 TG--AIWTNEKMQT-SVENVYAAGDVA 282
>sp|Q8GXR9|DHNA_ARATH NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NDC1 PE=1 SV=2
Length = 519
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 64/372 (17%)
Query: 57 KKKKVVVLGTGWAG--TSF-LKNLNNPS---YDVQVISPRNYFAFTPLLPSVTCGTVEAR 110
K+ +V +LG G+ G T+ L++L P V ++ F F P+L + G V+
Sbjct: 79 KRPRVCILGGGFGGLYTALRLESLVWPEDKKPQVVLVDQSERFVFKPMLYELLSGEVDVW 138
Query: 111 SIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKE------------ 158
I +++ + F D + C + +NG E
Sbjct: 139 EIAPRFSDLLTNTGIQ--------FLRDRVKTLLPC---DHLGVNGSEISVTGGTVLLES 187
Query: 159 EFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDE 218
F ++YD+LV+A+GA + PG E +EDA R+ E K N D
Sbjct: 188 GFKIEYDWLVLALGAESKLDVVPGAMELAFPFYTLEDAIRVN----EKLSKLERKNFKDG 243
Query: 219 ERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDK 278
++ +VG G GVE AA + + +++D + + + +IL
Sbjct: 244 SAIKV---AVVGCGYAGVELAATISE-----------RLQDRGIVQSINVSKNILTSAPD 289
Query: 279 RITAFAEEKFSRDGIDVKLGSMVVKVT-------DKEIFTKV----RGNGETSSMPYGMV 327
A + + + + LG +V + D+ F ++ RG E+ + +V
Sbjct: 290 GNREAAMKVLTSRKVQLLLGYLVQSIKRASNLEEDEGYFLELQPAERGL-ESQIIEADIV 348
Query: 328 VWSTGIAPHAI-IKDFMKQVGQTNRRALA-TDEWLRVEGSDSIYALGDCATV--NQRRVM 383
+W+ G P ++ V N R A TDE LRV+G I+ALGD +++ + +++
Sbjct: 349 LWTVGAKPLLTKLEPSGPNVLPLNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKIL 408
Query: 384 EDIAAI-FSKAD 394
A + F +AD
Sbjct: 409 PTTAQVAFQEAD 420
>sp|A8A3I8|NORW_ECOHS Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
O9:H4 (strain HS) GN=norW PE=3 SV=1
Length = 377
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 135/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + S + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDASIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F + IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLHL-FPQTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELA---MDFC-----------RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTSNTD-IYALGDCAEIN 278
>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2
OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1
Length = 488
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 162 MDYDYLVIAMGARANTFNTPGVE----ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSD 217
+ Y +L+IA GARA GVE EN +L+++ DA R+ VI+S +
Sbjct: 112 ISYKFLIIATGARALKLEEFGVEGSDAENVCYLRDLADANRL-ATVIQSSSNGNA----- 165
Query: 218 EERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMF 276
V++GGG G+E AA L V + + +T++ H + +F
Sbjct: 166 ---------VVIGGGYIGMECAASL--------------VINKINVTMVFPEAHCMARLF 202
Query: 277 DKRITAFAEEKFSRDGIDVKLGSMVVKV---TDKEIFTKVRGNGETSSMPYGMVVWSTGI 333
+I + E+ + G+ G+++ ++K++ +G S +P +VV GI
Sbjct: 203 TPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVNLKDG--SHLPADLVVVGIGI 260
Query: 334 APHAIIKDFMKQVGQTNRRALATDEWLRVEGSD-SIYALGDCAT 376
P+ + + GQ R++ SD S+YA+GD AT
Sbjct: 261 RPNTSLFE-----GQLTIEKGGIKVNSRMQSSDSSVYAIGDVAT 299
>sp|B7NSJ1|NORW_ECO7I Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=norW PE=3 SV=1
Length = 377
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + S + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDASIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F IDAE V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLRL-FPHTWVTDIDAEAHVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G+
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGI 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELAM---DFC-----------RAGKAVTLIDNAASILASLMLPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTSNAD-IYALGDCAEIN 278
>sp|Q32CL7|NORW_SHIDS Nitric oxide reductase FlRd-NAD(+) reductase OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=norW PE=3 SV=1
Length = 377
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 135/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + + + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLHL-FPHTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
+ PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPSVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELAM---DFC-----------RAGKMVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTSNAD-IYALGDCAEIN 278
>sp|B7M9E8|NORW_ECO8A Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli O8
(strain IAI1) GN=norW PE=3 SV=1
Length = 377
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 135/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + + + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F + IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLHL-FPQTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELA---MDFC-----------RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTSNAD-IYALGDCAEIN 278
>sp|B7LEC2|NORW_ECO55 Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
(strain 55989 / EAEC) GN=norW PE=3 SV=1
Length = 377
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 135/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + + + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F + IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLHL-FPQTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELA---MDFC-----------RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTSNAD-IYALGDCAEIN 278
>sp|B6I697|NORW_ECOSE Nitric oxide reductase FlRd-NAD(+) reductase OS=Escherichia coli
(strain SE11) GN=norW PE=3 SV=1
Length = 377
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 134/325 (41%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + + + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F IDAE + V +++Q YD LV+A GA A
Sbjct: 65 GEFAEQFNLRL-FPHTWVTDIDAEARVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELA---MDFC-----------RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DRQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTRNAD-IYALGDCAEIN 278
>sp|Q3YYF3|NORW_SHISS Nitric oxide reductase FlRd-NAD(+) reductase OS=Shigella sonnei
(strain Ss046) GN=norW PE=3 SV=1
Length = 377
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 133/325 (40%), Gaps = 58/325 (17%)
Query: 61 VVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIV-EPV 116
+V++G+G+A +KN+ + S + +I+ + + P L V A + +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDASIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 117 RNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176
+ N+ + F IDAE V +++Q YD LV+A GA A
Sbjct: 65 GEFAGQFNLHL-FPHTWVTDIDAEAHVVKSQNNQ-----------WQYDKLVLATGASAF 112
Query: 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGV 236
PG E + + Q R A L D R +IVGGG G
Sbjct: 113 VPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR-----VLIVGGGLIGS 154
Query: 237 EFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITAFAEEKFSRDGIDV 295
E A DF + +TL++ A IL ++ +++ + + + G+ +
Sbjct: 155 ELAM---DFC-----------RAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHL 200
Query: 296 KLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRA 353
L S + ++ TD I + S+ V+ +TG+ P + ++ G T R
Sbjct: 201 LLKSQLQGLEKTDSGILATL---DHQRSIEVDAVIAATGLRPETALA---RRAGLTINRG 254
Query: 354 LATDEWLRVEGSDSIYALGDCATVN 378
+ D +L+ +D IYALGDCA +N
Sbjct: 255 VCVDSYLQTS-NDDIYALGDCAEIN 278
>sp|P42454|RURE_ACIAD Rubredoxin-NAD(+) reductase OS=Acinetobacter sp. (strain ADP1)
GN=rubB PE=1 SV=2
Length = 393
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 56/329 (17%)
Query: 61 VVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVR 117
+V++G+G AG + + NP +++ +I + + P L + G I P+
Sbjct: 4 IVIIGSGMAGYTLAREFRKLNPEHELVMICADDAVNYAKPTLSNALSGNKAPEQI--PLG 61
Query: 118 NIVRKKNVDI---CFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174
+ K + + E I+ E ++ NG+E Y LV+A+GA
Sbjct: 62 D-AEKMSTQLKLQILSETWVKAINPETHELKLEK------NGQETI-QPYSKLVLAVGAN 113
Query: 175 ANTFNTPG-VEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGP 233
G ++ + + + D + R N L+ + KR+ VI+G G
Sbjct: 114 PTRLAIAGDGSDDIHVVNSLIDYRAFREN------------LAKRQDKRV---VILGAGL 158
Query: 234 TGVEFAAEL-HDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292
G EFA +L H + L P+ LL A HI + F K + G
Sbjct: 159 IGCEFANDLQHTGHQVTVIDLSPRPLGR----LLPA--HIADAFQKNL--------EESG 204
Query: 293 IDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT 349
I L + V KV+ D + + NG+T + +V+ + G+ P+ D K G
Sbjct: 205 IHFVLSTTVEKVSKINDGQDYAVTLANGQT--LVADIVLSAIGLQPNI---DLAKHAGVH 259
Query: 350 NRRALATDEWLRVEGSDSIYALGDCATVN 378
R + T+ L D IYA+GDCA VN
Sbjct: 260 TSRGILTNSLLETNLED-IYAIGDCAEVN 287
>sp|A2RIB7|NAOX_LACLM NADH oxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363)
GN=noxE PE=1 SV=1
Length = 446
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 137/333 (41%), Gaps = 63/333 (18%)
Query: 60 KVVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFTPLLPSVTCGTV--EARSIVEP 115
K+VV+GT AG + L P +++ +I + ++ + CGT R I +P
Sbjct: 2 KIVVIGTNHAGIATANTLLEQYPGHEIVMIDRNSNMSY------LGCGTAIWVGRQIEKP 55
Query: 116 VRNIVRK------KNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVI 169
K K V I E E +ID NKKVY ++ + +E YD LV+
Sbjct: 56 DELFYAKAEDFEAKGVKI-LTETEVSEIDFANKKVYAKTKSD------DEIIEAYDKLVL 108
Query: 170 AMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVI 228
A G+R N PG + + +FLK ++ Q I + E+ KRI +
Sbjct: 109 ATGSRPIIPNLPGKDLKGIHFLKLFQEGQAID------------AEFAKEKVKRI---AV 153
Query: 229 VGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH--ILNMFDKRITAFAEE 286
+G G G E A K K LL A++ + + +D+ +E
Sbjct: 154 IGAGYIGTEIA---------------EAAKRRGKEVLLFDAENTSLASYYDEEFAKGMDE 198
Query: 287 KFSRDGIDVKLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344
++ GI++ G + K ++ +++ N T + +V+ G ++ +
Sbjct: 199 NLAQHGIELHFGELAKEFKANEEGYVSQIVTNKATYDVD--LVINCIGFTANSALAS--D 254
Query: 345 QVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377
++ A+ D+ + D +YA+GD AT+
Sbjct: 255 KLATFKNGAIKVDKHQQSSDPD-VYAVGDVATI 286
>sp|P59403|NORW_SHIFL Nitric oxide reductase FlRd-NAD(+) reductase OS=Shigella flexneri
GN=norW PE=3 SV=1
Length = 377
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 42/218 (19%)
Query: 164 YDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223
YD LV+A GA A PG E + + Q R A L D R
Sbjct: 100 YDKLVLATGASAFVPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR--- 143
Query: 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITA 282
+IVGGG G E A DF + +TL++ A IL ++ +++
Sbjct: 144 --VLIVGGGLIGSELAM---DFC-----------RAGKAVTLIDNAASILASLMPPEVSS 187
Query: 283 FAEEKFSRDGIDVKLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340
+ + + G+ + L S + ++ TD I + S+ V+ +TG+ P +
Sbjct: 188 RLQHRLTEMGVHLLLKSQLQGLEKTDSGILATL---DHQRSIEVDAVIAATGLRPETALA 244
Query: 341 DFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVN 378
++ G T R + D +L+ +D IYALGDCA +N
Sbjct: 245 ---RRAGLTINRGVCVDSYLQTSNAD-IYALGDCAEIN 278
>sp|Q0T1D6|NORW_SHIF8 Nitric oxide reductase FlRd-NAD(+) reductase OS=Shigella flexneri
serotype 5b (strain 8401) GN=norW PE=3 SV=1
Length = 377
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 42/218 (19%)
Query: 164 YDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223
YD LV+A GA A PG E + + Q R A L D R
Sbjct: 100 YDKLVLATGASAFVPPVPGRE----LMLTLNSQQEYR---------ACETQLRDARR--- 143
Query: 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NMFDKRITA 282
+IVGGG G E A DF + +TL++ A IL ++ +++
Sbjct: 144 --VLIVGGGLIGSELAM---DFC-----------RAGKAVTLIDNAASILASLMPPEVSS 187
Query: 283 FAEEKFSRDGIDVKLGSMV--VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK 340
+ + + G+ + L S + ++ TD I + S+ V+ +TG+ P +
Sbjct: 188 RLQHRLTEMGVHLLLKSQLQGLEKTDSGILATL---DHQRSIEVDAVIAATGLRPETALA 244
Query: 341 DFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVN 378
++ G T R + D +L+ +D IYALGDCA +N
Sbjct: 245 ---RRAGLTINRGVCVDSYLQTSNAD-IYALGDCAEIN 278
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,985,062
Number of Sequences: 539616
Number of extensions: 9252989
Number of successful extensions: 30121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 29676
Number of HSP's gapped (non-prelim): 391
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)