Query 007975
Match_columns 583
No_of_seqs 464 out of 4222
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 17:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 7.1E-90 1.5E-94 684.2 34.2 488 1-583 1-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 1E-77 2.2E-82 616.9 41.6 401 57-580 2-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 7.4E-67 1.6E-71 558.2 46.6 416 55-583 7-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 2.4E-48 5.1E-53 408.6 38.6 356 60-558 1-362 (364)
5 PRK13512 coenzyme A disulfide 100.0 1.4E-39 3E-44 349.4 33.0 274 58-377 1-281 (438)
6 PRK09754 phenylpropionate diox 100.0 1.5E-38 3.3E-43 337.4 34.2 271 57-378 2-280 (396)
7 PRK09564 coenzyme A disulfide 100.0 4.3E-38 9.2E-43 339.5 31.5 278 59-378 1-287 (444)
8 PRK04965 NADH:flavorubredoxin 100.0 1.8E-37 3.8E-42 327.4 31.9 269 58-377 2-277 (377)
9 PRK14989 nitrite reductase sub 100.0 7.6E-37 1.6E-41 347.5 35.5 271 58-377 3-285 (847)
10 TIGR02374 nitri_red_nirB nitri 100.0 3E-36 6.4E-41 343.1 32.3 269 61-377 1-276 (785)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2E-35 4.3E-40 311.9 27.7 269 56-376 2-313 (454)
12 TIGR01424 gluta_reduc_2 glutat 100.0 5.9E-35 1.3E-39 314.5 28.6 261 58-376 2-304 (446)
13 PRK06416 dihydrolipoamide dehy 100.0 6.7E-35 1.5E-39 316.0 27.8 269 57-376 3-312 (462)
14 PLN02507 glutathione reductase 100.0 1.3E-34 2.8E-39 314.6 29.5 267 56-376 23-341 (499)
15 PRK06370 mercuric reductase; V 100.0 4.2E-34 9.1E-39 309.6 31.6 266 56-376 3-312 (463)
16 PRK05249 soluble pyridine nucl 100.0 4.4E-34 9.6E-39 309.6 31.5 269 56-376 3-313 (461)
17 PRK06467 dihydrolipoamide dehy 100.0 2.5E-34 5.4E-39 311.1 29.4 269 57-376 3-315 (471)
18 PRK05976 dihydrolipoamide dehy 100.0 2.7E-34 5.9E-39 311.7 28.6 272 57-376 3-321 (472)
19 PRK06115 dihydrolipoamide dehy 100.0 5E-34 1.1E-38 308.6 29.2 270 57-376 2-316 (466)
20 TIGR01421 gluta_reduc_1 glutat 100.0 6.7E-34 1.4E-38 306.1 28.9 260 58-376 2-306 (450)
21 PRK08010 pyridine nucleotide-d 100.0 8.4E-34 1.8E-38 305.5 29.0 268 57-377 2-296 (441)
22 TIGR02053 MerA mercuric reduct 100.0 6.9E-34 1.5E-38 308.1 27.7 265 59-376 1-307 (463)
23 PRK06116 glutathione reductase 100.0 9.1E-34 2E-38 306.0 28.1 259 58-376 4-306 (450)
24 PRK14694 putative mercuric red 100.0 4.1E-33 9E-38 301.9 32.5 267 56-376 4-313 (468)
25 TIGR01423 trypano_reduc trypan 100.0 1.9E-33 4.1E-38 303.7 29.1 273 57-376 2-329 (486)
26 PLN02546 glutathione reductase 100.0 2E-33 4.2E-38 306.9 28.5 260 58-376 79-391 (558)
27 PRK07251 pyridine nucleotide-d 100.0 3.1E-33 6.6E-38 300.9 29.3 268 57-377 2-295 (438)
28 PTZ00058 glutathione reductase 100.0 4.9E-33 1.1E-37 303.5 30.1 272 56-378 46-378 (561)
29 TIGR01292 TRX_reduct thioredox 100.0 4.4E-33 9.6E-38 284.5 27.8 263 59-376 1-276 (300)
30 PRK07846 mycothione reductase; 100.0 9.5E-33 2.1E-37 297.0 31.2 258 59-376 2-303 (451)
31 TIGR01350 lipoamide_DH dihydro 100.0 8.1E-33 1.7E-37 299.8 30.7 266 59-376 2-310 (461)
32 PRK07818 dihydrolipoamide dehy 100.0 4.3E-33 9.4E-38 301.8 28.5 267 58-376 4-314 (466)
33 PRK14727 putative mercuric red 100.0 1.3E-32 2.8E-37 298.6 32.0 268 56-376 14-324 (479)
34 PRK07845 flavoprotein disulfid 100.0 7.4E-33 1.6E-37 299.5 29.5 267 58-376 1-315 (466)
35 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1E-32 2.2E-37 296.0 29.6 263 72-378 1-274 (427)
36 PRK13748 putative mercuric red 100.0 1.2E-32 2.6E-37 305.5 30.3 266 57-376 97-406 (561)
37 PRK06292 dihydrolipoamide dehy 100.0 1.4E-32 3E-37 297.9 28.0 263 57-376 2-309 (460)
38 TIGR01438 TGR thioredoxin and 100.0 1.3E-32 2.9E-37 297.8 27.0 267 58-376 2-321 (484)
39 PRK06912 acoL dihydrolipoamide 100.0 1.4E-32 3E-37 297.1 26.3 263 60-376 2-308 (458)
40 PRK10262 thioredoxin reductase 100.0 6.3E-32 1.4E-36 279.0 26.7 271 56-377 4-291 (321)
41 PRK06327 dihydrolipoamide dehy 100.0 3.1E-31 6.7E-36 287.7 29.2 270 58-376 4-325 (475)
42 PTZ00052 thioredoxin reductase 100.0 9.4E-31 2E-35 284.7 30.4 263 58-376 5-318 (499)
43 TIGR03143 AhpF_homolog putativ 100.0 4.3E-31 9.4E-36 290.9 26.9 266 57-376 3-284 (555)
44 PTZ00153 lipoamide dehydrogena 100.0 2.4E-30 5.2E-35 285.9 31.8 270 58-376 116-473 (659)
45 TIGR03452 mycothione_red mycot 100.0 3.5E-30 7.5E-35 277.4 30.4 259 58-376 2-306 (452)
46 TIGR03140 AhpF alkyl hydropero 100.0 9.2E-31 2E-35 286.3 26.0 268 56-377 210-489 (515)
47 TIGR01316 gltA glutamate synth 100.0 6.3E-31 1.4E-35 282.7 24.0 271 55-376 130-426 (449)
48 TIGR03315 Se_ygfK putative sel 100.0 4.5E-30 9.8E-35 291.5 30.9 262 56-376 535-816 (1012)
49 PRK12831 putative oxidoreducta 100.0 1.4E-30 3.1E-35 280.5 25.2 273 55-376 137-437 (464)
50 KOG1336 Monodehydroascorbate/f 100.0 1.6E-30 3.5E-35 265.2 23.0 274 56-379 72-354 (478)
51 PRK11749 dihydropyrimidine deh 100.0 2.9E-30 6.2E-35 278.9 26.3 267 55-376 137-428 (457)
52 PRK15317 alkyl hydroperoxide r 100.0 1.3E-29 2.8E-34 277.5 28.9 267 56-377 209-488 (517)
53 PRK09853 putative selenate red 100.0 2.2E-29 4.7E-34 284.5 29.5 262 56-376 537-818 (1019)
54 PRK12770 putative glutamate sy 100.0 4E-29 8.6E-34 261.2 25.8 281 57-376 17-326 (352)
55 COG1251 NirB NAD(P)H-nitrite r 100.0 2.4E-29 5.2E-34 267.4 23.2 273 57-377 2-281 (793)
56 COG0492 TrxB Thioredoxin reduc 100.0 6.6E-29 1.4E-33 250.5 24.1 277 57-393 2-293 (305)
57 PRK12778 putative bifunctional 100.0 6.2E-29 1.3E-33 283.4 26.0 271 56-376 429-726 (752)
58 PRK12810 gltD glutamate syntha 100.0 3.9E-29 8.4E-34 270.7 20.2 275 56-376 141-441 (471)
59 PRK12779 putative bifunctional 100.0 1.8E-28 3.8E-33 281.6 26.3 275 56-377 304-604 (944)
60 KOG1335 Dihydrolipoamide dehyd 100.0 5.4E-29 1.2E-33 245.1 18.2 271 57-378 38-357 (506)
61 KOG0405 Pyridine nucleotide-di 100.0 2.3E-28 4.9E-33 237.8 20.8 270 56-377 18-329 (478)
62 PRK12814 putative NADPH-depend 100.0 4.4E-28 9.5E-33 271.3 23.9 263 56-376 191-477 (652)
63 PRK12775 putative trifunctiona 100.0 2.9E-27 6.4E-32 273.9 22.6 273 57-376 429-731 (1006)
64 TIGR01318 gltD_gamma_fam gluta 100.0 6E-27 1.3E-31 252.8 22.9 274 57-376 140-442 (467)
65 PRK12769 putative oxidoreducta 99.9 5.1E-27 1.1E-31 263.8 21.6 274 56-376 325-628 (654)
66 TIGR01317 GOGAT_sm_gam glutama 99.9 5E-26 1.1E-30 246.6 25.1 277 57-376 142-455 (485)
67 PRK13984 putative oxidoreducta 99.9 5.9E-26 1.3E-30 253.6 24.7 274 56-376 281-579 (604)
68 KOG4716 Thioredoxin reductase 99.9 4.4E-26 9.5E-31 221.0 17.1 272 56-376 17-342 (503)
69 PRK12809 putative oxidoreducta 99.9 9.2E-26 2E-30 252.5 21.9 274 56-376 308-611 (639)
70 COG0446 HcaD Uncharacterized N 99.9 4E-24 8.6E-29 228.2 27.8 268 61-378 1-280 (415)
71 KOG0404 Thioredoxin reductase 99.9 6E-25 1.3E-29 201.8 17.5 287 57-392 7-310 (322)
72 PLN02852 ferredoxin-NADP+ redu 99.9 2.1E-24 4.6E-29 230.7 23.1 311 55-394 23-415 (491)
73 PRK12771 putative glutamate sy 99.9 4.1E-24 8.8E-29 236.6 25.5 262 56-376 135-420 (564)
74 COG3634 AhpF Alkyl hydroperoxi 99.9 7.4E-25 1.6E-29 213.2 15.9 283 56-393 209-507 (520)
75 KOG3851 Sulfide:quinone oxidor 99.9 1.5E-24 3.2E-29 209.1 13.3 289 56-378 37-337 (446)
76 TIGR01372 soxA sarcosine oxida 99.9 2.1E-22 4.5E-27 235.0 30.0 287 57-393 162-464 (985)
77 KOG1346 Programmed cell death 99.9 1.4E-22 3E-27 201.3 20.0 392 57-537 177-627 (659)
78 PLN02172 flavin-containing mon 99.9 1.1E-21 2.3E-26 210.7 19.7 255 56-374 8-328 (461)
79 PRK06567 putative bifunctional 99.8 4.1E-19 8.9E-24 198.8 23.2 255 54-339 379-730 (1028)
80 COG0493 GltD NADPH-dependent g 99.8 2.7E-20 5.8E-25 197.3 13.1 284 52-376 117-427 (457)
81 PF00743 FMO-like: Flavin-bind 99.8 1.1E-18 2.4E-23 189.8 14.3 161 58-246 1-206 (531)
82 PF07992 Pyr_redox_2: Pyridine 99.8 3.5E-20 7.5E-25 177.9 1.6 140 60-202 1-148 (201)
83 KOG0399 Glutamate synthase [Am 99.8 1.9E-18 4.2E-23 188.1 13.2 286 46-376 1773-2096(2142)
84 KOG2755 Oxidoreductase [Genera 99.8 1.7E-18 3.6E-23 163.3 8.0 266 60-377 1-322 (334)
85 COG1148 HdrA Heterodisulfide r 99.7 2.1E-14 4.4E-19 146.6 23.5 305 56-376 122-522 (622)
86 PF13738 Pyr_redox_3: Pyridine 99.6 4.7E-16 1E-20 149.5 7.2 165 62-271 1-201 (203)
87 KOG1800 Ferredoxin/adrenodoxin 99.6 9.2E-15 2E-19 145.1 13.0 307 56-395 18-401 (468)
88 PF13434 K_oxygenase: L-lysine 99.6 2.4E-14 5.2E-19 148.0 14.5 238 58-334 2-340 (341)
89 KOG1399 Flavin-containing mono 99.6 2.6E-14 5.7E-19 151.1 14.6 225 56-335 4-269 (448)
90 PTZ00188 adrenodoxin reductase 99.6 7.4E-14 1.6E-18 147.5 17.4 300 56-388 37-427 (506)
91 COG2072 TrkA Predicted flavopr 99.5 1.1E-13 2.4E-18 148.3 17.2 176 54-272 4-210 (443)
92 COG3486 IucD Lysine/ornithine 99.5 8.1E-12 1.8E-16 126.3 21.1 283 55-376 2-387 (436)
93 PRK05329 anaerobic glycerol-3- 99.4 5.6E-13 1.2E-17 141.0 12.7 141 227-379 219-394 (422)
94 PF00070 Pyr_redox: Pyridine n 99.3 4.5E-11 9.7E-16 96.7 11.1 68 225-306 1-68 (80)
95 COG4529 Uncharacterized protei 98.8 8.7E-07 1.9E-11 92.7 23.2 172 58-270 1-231 (474)
96 COG2081 Predicted flavoprotein 98.8 2.4E-08 5.1E-13 101.7 11.1 110 56-174 1-166 (408)
97 PRK09897 hypothetical protein; 98.8 1.4E-07 3.1E-12 102.9 15.7 183 58-271 1-246 (534)
98 PF01266 DAO: FAD dependent ox 98.7 3E-07 6.5E-12 95.8 16.3 89 250-347 121-211 (358)
99 COG0579 Predicted dehydrogenas 98.7 5.8E-08 1.3E-12 101.9 10.0 89 248-339 125-215 (429)
100 PF03486 HI0933_like: HI0933-l 98.7 1.4E-07 3.1E-12 99.8 12.2 80 266-348 95-185 (409)
101 PRK12409 D-amino acid dehydrog 98.6 2.6E-06 5.7E-11 91.1 20.8 35 58-92 1-35 (410)
102 PLN02463 lycopene beta cyclase 98.6 1.9E-07 4.1E-12 100.3 11.5 111 56-176 26-170 (447)
103 TIGR03378 glycerol3P_GlpB glyc 98.6 7.1E-06 1.5E-10 86.3 21.3 117 260-379 247-396 (419)
104 PRK12842 putative succinate de 98.6 1.3E-07 2.9E-12 105.2 8.8 95 224-334 158-274 (574)
105 TIGR02032 GG-red-SF geranylger 98.6 2.4E-07 5.3E-12 94.0 9.6 109 59-175 1-148 (295)
106 PRK07843 3-ketosteroid-delta-1 98.5 1.1E-07 2.5E-12 105.3 6.9 93 224-332 161-266 (557)
107 PRK13977 myosin-cross-reactive 98.5 8.8E-06 1.9E-10 88.4 19.9 43 55-97 19-65 (576)
108 TIGR03364 HpnW_proposed FAD de 98.5 6.1E-06 1.3E-10 86.8 18.4 71 278-354 145-217 (365)
109 PRK00711 D-amino acid dehydrog 98.5 7E-06 1.5E-10 88.0 18.7 56 278-336 201-258 (416)
110 PTZ00383 malate:quinone oxidor 98.5 8.4E-07 1.8E-11 96.3 10.9 63 278-348 211-282 (497)
111 PRK10157 putative oxidoreducta 98.4 4.3E-06 9.3E-11 89.9 16.1 39 57-95 4-42 (428)
112 PF00070 Pyr_redox: Pyridine n 98.4 6.1E-07 1.3E-11 72.4 7.3 77 60-148 1-79 (80)
113 PRK06847 hypothetical protein; 98.4 1E-06 2.2E-11 93.0 10.9 111 57-176 3-164 (375)
114 PRK10015 oxidoreductase; Provi 98.4 3.4E-06 7.3E-11 90.6 14.3 39 57-95 4-42 (429)
115 PF01134 GIDA: Glucose inhibit 98.4 5.5E-07 1.2E-11 93.5 7.8 103 60-173 1-150 (392)
116 PRK04176 ribulose-1,5-biphosph 98.4 8.8E-07 1.9E-11 88.2 8.7 117 57-174 24-172 (257)
117 TIGR01790 carotene-cycl lycope 98.4 1.3E-06 2.8E-11 92.8 10.3 106 60-175 1-141 (388)
118 PLN02697 lycopene epsilon cycl 98.4 1.4E-06 3.1E-11 95.1 10.6 108 56-175 106-248 (529)
119 PRK11728 hydroxyglutarate oxid 98.4 5E-06 1.1E-10 88.5 14.4 56 277-336 148-205 (393)
120 PRK07251 pyridine nucleotide-d 98.4 2E-06 4.3E-11 92.9 11.2 100 58-178 157-256 (438)
121 TIGR01292 TRX_reduct thioredox 98.4 3.4E-06 7.3E-11 85.9 12.1 94 225-336 2-113 (300)
122 COG0644 FixC Dehydrogenases (f 98.4 1.6E-06 3.4E-11 92.3 9.9 111 57-175 2-152 (396)
123 PF01494 FAD_binding_3: FAD bi 98.3 6.1E-06 1.3E-10 85.8 13.9 55 279-333 112-170 (356)
124 PRK06912 acoL dihydrolipoamide 98.3 2.7E-06 6E-11 92.3 11.6 102 58-178 170-271 (458)
125 TIGR03385 CoA_CoA_reduc CoA-di 98.3 2.7E-06 5.8E-11 91.6 11.1 99 58-177 137-235 (427)
126 PRK06416 dihydrolipoamide dehy 98.3 2.8E-06 6E-11 92.4 10.9 105 58-179 172-276 (462)
127 COG1249 Lpd Pyruvate/2-oxoglut 98.3 3.3E-06 7.1E-11 90.3 11.1 104 56-179 171-276 (454)
128 PRK05976 dihydrolipoamide dehy 98.3 3.5E-06 7.5E-11 91.9 11.5 103 58-178 180-284 (472)
129 COG1233 Phytoene dehydrogenase 98.3 8.4E-07 1.8E-11 96.8 6.7 42 57-98 2-43 (487)
130 TIGR02023 BchP-ChlP geranylger 98.3 2.8E-06 6.1E-11 90.2 10.4 32 59-90 1-32 (388)
131 PRK05192 tRNA uridine 5-carbox 98.3 2.9E-06 6.3E-11 93.0 10.4 35 57-91 3-37 (618)
132 TIGR01320 mal_quin_oxido malat 98.3 1.7E-05 3.6E-10 86.4 16.3 67 278-348 178-249 (483)
133 TIGR01350 lipoamide_DH dihydro 98.3 3.2E-06 7E-11 91.9 10.6 103 58-178 170-272 (461)
134 COG0029 NadB Aspartate oxidase 98.3 2.4E-05 5.2E-10 82.0 16.2 32 60-92 9-40 (518)
135 PRK07236 hypothetical protein; 98.3 4.6E-06 9.9E-11 88.5 11.2 37 56-92 4-40 (386)
136 TIGR01373 soxB sarcosine oxida 98.3 6.3E-05 1.4E-09 80.4 20.0 54 278-334 183-239 (407)
137 PRK07608 ubiquinone biosynthes 98.3 4.3E-06 9.3E-11 88.7 11.0 36 58-93 5-40 (388)
138 PRK06184 hypothetical protein; 98.3 3.5E-06 7.5E-11 92.7 10.5 36 57-92 2-37 (502)
139 TIGR01377 soxA_mon sarcosine o 98.3 3.3E-05 7.2E-10 81.6 17.6 82 249-336 117-201 (380)
140 PRK04965 NADH:flavorubredoxin 98.3 4.9E-06 1.1E-10 88.0 11.2 101 58-177 141-241 (377)
141 PRK06834 hypothetical protein; 98.3 4E-06 8.7E-11 91.5 10.6 112 57-177 2-158 (488)
142 PRK11101 glpA sn-glycerol-3-ph 98.3 7E-06 1.5E-10 90.9 12.6 84 249-335 123-211 (546)
143 PRK13339 malate:quinone oxidor 98.3 3.1E-06 6.8E-11 91.6 9.6 94 278-375 184-294 (497)
144 TIGR03329 Phn_aa_oxid putative 98.3 3.1E-05 6.6E-10 84.2 17.3 55 278-336 183-238 (460)
145 PF05834 Lycopene_cycl: Lycope 98.3 5.1E-06 1.1E-10 87.7 11.0 105 60-176 1-143 (374)
146 PRK08773 2-octaprenyl-3-methyl 98.2 5.5E-06 1.2E-10 88.1 11.1 37 56-92 4-40 (392)
147 PRK06126 hypothetical protein; 98.2 1.4E-05 3E-10 88.8 14.7 37 56-92 5-41 (545)
148 PLN00093 geranylgeranyl diphos 98.2 3.1E-06 6.7E-11 91.3 9.2 38 54-91 35-72 (450)
149 PRK07364 2-octaprenyl-6-methox 98.2 5.2E-06 1.1E-10 88.9 10.6 36 58-93 18-53 (415)
150 TIGR00292 thiazole biosynthesi 98.2 4.7E-06 1E-10 82.8 9.3 115 58-174 21-169 (254)
151 PRK06327 dihydrolipoamide dehy 98.2 7.3E-06 1.6E-10 89.4 11.6 103 58-178 183-287 (475)
152 PRK07494 2-octaprenyl-6-methox 98.2 8.4E-06 1.8E-10 86.5 11.6 38 55-92 4-41 (388)
153 PRK07233 hypothetical protein; 98.2 8E-06 1.7E-10 87.9 11.6 37 60-96 1-37 (434)
154 PRK09754 phenylpropionate diox 98.2 4.9E-06 1.1E-10 88.6 9.7 99 58-177 144-243 (396)
155 PRK06134 putative FAD-binding 98.2 2.4E-06 5.1E-11 95.4 7.4 41 56-96 10-50 (581)
156 PRK06370 mercuric reductase; V 98.2 6.9E-06 1.5E-10 89.3 10.8 102 58-178 171-274 (463)
157 TIGR02734 crtI_fam phytoene de 98.2 4.7E-05 1E-09 83.8 17.4 53 278-332 219-273 (502)
158 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.7E-06 3.6E-11 81.1 4.9 65 58-125 30-94 (262)
159 TIGR02053 MerA mercuric reduct 98.2 7.5E-06 1.6E-10 89.1 10.9 103 58-179 166-270 (463)
160 PRK09564 coenzyme A disulfide 98.2 1.2E-05 2.7E-10 86.8 12.5 99 225-335 2-115 (444)
161 PRK07333 2-octaprenyl-6-methox 98.2 6.3E-06 1.4E-10 87.9 9.9 35 58-92 1-37 (403)
162 PRK05257 malate:quinone oxidor 98.2 9.5E-05 2.1E-09 80.7 18.7 60 278-337 183-248 (494)
163 PRK14694 putative mercuric red 98.2 1.1E-05 2.5E-10 87.7 11.3 99 58-178 178-276 (468)
164 PF13454 NAD_binding_9: FAD-NA 98.2 1.3E-05 2.8E-10 73.6 9.9 102 62-173 1-155 (156)
165 PRK13512 coenzyme A disulfide 98.1 8.9E-06 1.9E-10 87.8 10.2 97 58-178 148-244 (438)
166 PRK05714 2-octaprenyl-3-methyl 98.1 1.2E-05 2.6E-10 85.9 11.0 34 58-91 2-35 (405)
167 PRK08163 salicylate hydroxylas 98.1 8.6E-06 1.9E-10 86.7 9.6 37 57-93 3-39 (396)
168 PRK08244 hypothetical protein; 98.1 8.3E-06 1.8E-10 89.5 9.7 35 58-92 2-36 (493)
169 PRK08010 pyridine nucleotide-d 98.1 1.3E-05 2.8E-10 86.6 11.0 101 57-178 157-257 (441)
170 PRK05249 soluble pyridine nucl 98.1 1.3E-05 2.8E-10 87.2 11.0 101 58-178 175-275 (461)
171 TIGR01424 gluta_reduc_2 glutat 98.1 1.4E-05 2.9E-10 86.6 10.8 101 58-178 166-266 (446)
172 PRK07818 dihydrolipoamide dehy 98.1 1.6E-05 3.4E-10 86.6 11.2 103 58-178 172-276 (466)
173 PRK09126 hypothetical protein; 98.1 1.5E-05 3.3E-10 84.7 10.8 36 57-92 2-37 (392)
174 COG2509 Uncharacterized FAD-de 98.1 8.9E-05 1.9E-09 76.9 15.7 78 269-348 164-243 (486)
175 PRK11259 solA N-methyltryptoph 98.1 1.1E-05 2.3E-10 85.3 9.5 35 57-91 2-36 (376)
176 PRK04176 ribulose-1,5-biphosph 98.1 0.0001 2.2E-09 73.4 15.9 136 225-377 27-225 (257)
177 PRK08020 ubiF 2-octaprenyl-3-m 98.1 1.7E-05 3.6E-10 84.3 10.9 35 57-91 4-38 (391)
178 PRK06116 glutathione reductase 98.1 1.4E-05 3.1E-10 86.6 10.4 101 58-178 167-268 (450)
179 PRK07846 mycothione reductase; 98.1 1.8E-05 3.9E-10 85.7 11.1 101 58-179 166-266 (451)
180 COG2081 Predicted flavoprotein 98.1 5.2E-05 1.1E-09 77.7 13.6 107 225-348 5-186 (408)
181 PRK07190 hypothetical protein; 98.1 1.6E-05 3.5E-10 86.7 10.8 36 57-92 4-39 (487)
182 COG0446 HcaD Uncharacterized N 98.1 1.1E-05 2.4E-10 85.9 9.1 98 58-176 136-238 (415)
183 TIGR01988 Ubi-OHases Ubiquinon 98.1 1.7E-05 3.7E-10 83.8 10.4 33 60-92 1-33 (385)
184 PRK05732 2-octaprenyl-6-methox 98.1 2E-05 4.4E-10 83.7 10.7 34 57-90 2-38 (395)
185 PLN02507 glutathione reductase 98.1 2.2E-05 4.7E-10 86.1 10.9 102 58-179 203-304 (499)
186 PRK07845 flavoprotein disulfid 98.0 2.2E-05 4.8E-10 85.4 10.9 102 58-179 177-278 (466)
187 PRK06115 dihydrolipoamide dehy 98.0 2.5E-05 5.4E-10 85.0 11.0 105 57-178 173-279 (466)
188 PRK07045 putative monooxygenas 98.0 1.8E-05 3.9E-10 84.0 9.6 37 57-93 4-40 (388)
189 TIGR01421 gluta_reduc_1 glutat 98.0 1.8E-05 3.9E-10 85.6 9.7 100 58-178 166-268 (450)
190 PRK08243 4-hydroxybenzoate 3-m 98.0 2.4E-05 5.2E-10 83.2 10.5 35 58-92 2-36 (392)
191 PRK13748 putative mercuric red 98.0 2.3E-05 4.9E-10 87.5 10.7 99 58-178 270-368 (561)
192 PLN02487 zeta-carotene desatur 98.0 0.00013 2.8E-09 80.7 16.3 39 57-95 74-112 (569)
193 TIGR00292 thiazole biosynthesi 98.0 0.00022 4.8E-09 70.8 16.5 136 225-377 23-224 (254)
194 PLN02464 glycerol-3-phosphate 98.0 0.00026 5.7E-09 79.6 19.1 84 248-334 200-295 (627)
195 PRK11445 putative oxidoreducta 98.0 2.9E-05 6.2E-10 81.3 10.7 34 58-92 1-34 (351)
196 COG1232 HemY Protoporphyrinoge 98.0 9.6E-05 2.1E-09 78.5 14.4 38 59-96 1-40 (444)
197 PRK14727 putative mercuric red 98.0 2.7E-05 5.8E-10 85.1 10.6 99 58-178 188-286 (479)
198 TIGR03452 mycothione_red mycot 98.0 3.5E-05 7.6E-10 83.5 11.3 101 58-179 169-269 (452)
199 TIGR01984 UbiH 2-polyprenyl-6- 98.0 2.6E-05 5.6E-10 82.5 10.0 33 60-92 1-34 (382)
200 PLN02612 phytoene desaturase 98.0 0.00064 1.4E-08 75.7 21.2 44 54-97 89-132 (567)
201 PRK05868 hypothetical protein; 98.0 3.8E-05 8.3E-10 81.0 11.0 36 58-93 1-36 (372)
202 PRK06753 hypothetical protein; 98.0 1.6E-05 3.6E-10 83.8 8.1 34 59-92 1-34 (373)
203 PRK08132 FAD-dependent oxidore 98.0 3.9E-05 8.5E-10 85.3 11.5 38 56-93 21-58 (547)
204 TIGR02732 zeta_caro_desat caro 98.0 0.00024 5.2E-09 77.4 17.2 37 60-96 1-37 (474)
205 PRK07588 hypothetical protein; 98.0 2.5E-05 5.5E-10 83.0 9.4 35 59-93 1-35 (391)
206 TIGR02028 ChlP geranylgeranyl 98.0 3.7E-05 8.1E-10 81.8 10.6 34 59-92 1-34 (398)
207 TIGR01789 lycopene_cycl lycope 98.0 4E-05 8.7E-10 80.7 10.7 33 60-92 1-35 (370)
208 PF13450 NAD_binding_8: NAD(P) 98.0 5E-06 1.1E-10 64.7 2.9 34 63-96 1-34 (68)
209 COG3380 Predicted NAD/FAD-depe 98.0 1.4E-05 3.1E-10 77.2 6.5 33 58-90 1-33 (331)
210 PRK08013 oxidoreductase; Provi 98.0 3.8E-05 8.3E-10 81.9 10.4 36 57-92 2-37 (400)
211 TIGR00275 flavoprotein, HI0933 97.9 2.9E-05 6.3E-10 82.7 9.3 104 62-175 1-160 (400)
212 PLN02985 squalene monooxygenas 97.9 7.6E-05 1.7E-09 81.9 12.6 37 55-91 40-76 (514)
213 PRK06185 hypothetical protein; 97.9 4.6E-05 1E-09 81.4 10.5 36 57-92 5-40 (407)
214 PRK06467 dihydrolipoamide dehy 97.9 4.2E-05 9.1E-10 83.3 10.3 102 58-178 174-277 (471)
215 PRK08401 L-aspartate oxidase; 97.9 5.7E-05 1.2E-09 82.1 11.3 34 58-91 1-34 (466)
216 PRK06183 mhpA 3-(3-hydroxyphen 97.9 4.7E-05 1E-09 84.4 10.9 37 56-92 8-44 (538)
217 PRK15317 alkyl hydroperoxide r 97.9 0.0001 2.2E-09 81.3 13.4 97 222-335 210-322 (517)
218 COG0654 UbiH 2-polyprenyl-6-me 97.9 3.2E-05 6.9E-10 82.1 9.1 33 58-90 2-34 (387)
219 TIGR01423 trypano_reduc trypan 97.9 4.5E-05 9.8E-10 83.2 10.1 99 58-178 187-291 (486)
220 PRK06475 salicylate hydroxylas 97.9 3.1E-05 6.8E-10 82.5 8.7 35 58-92 2-36 (400)
221 TIGR01438 TGR thioredoxin and 97.9 5.1E-05 1.1E-09 82.8 10.5 101 58-178 180-282 (484)
222 KOG2820 FAD-dependent oxidored 97.9 0.00071 1.5E-08 67.7 17.2 90 247-344 122-217 (399)
223 TIGR03140 AhpF alkyl hydropero 97.9 0.0001 2.2E-09 81.3 12.9 98 221-335 210-323 (515)
224 TIGR02374 nitri_red_nirB nitri 97.9 4.5E-05 9.7E-10 88.1 10.5 100 58-178 140-241 (785)
225 PTZ00058 glutathione reductase 97.9 5.7E-05 1.2E-09 83.5 10.9 102 58-178 237-339 (561)
226 PF12831 FAD_oxidored: FAD dep 97.9 5.4E-06 1.2E-10 89.1 2.7 106 60-173 1-148 (428)
227 PRK08849 2-octaprenyl-3-methyl 97.9 4E-05 8.7E-10 81.2 9.3 34 58-91 3-36 (384)
228 PTZ00052 thioredoxin reductase 97.9 6.3E-05 1.4E-09 82.5 11.1 101 58-179 182-282 (499)
229 PF00890 FAD_binding_2: FAD bi 97.9 0.00025 5.5E-09 76.0 15.5 59 277-335 140-203 (417)
230 PRK06481 fumarate reductase fl 97.9 8.6E-05 1.9E-09 81.6 12.1 38 57-94 60-97 (506)
231 COG0665 DadA Glycine/D-amino a 97.9 0.00014 2.9E-09 77.1 13.1 37 56-92 2-38 (387)
232 PF13738 Pyr_redox_3: Pyridine 97.9 0.00011 2.4E-09 70.3 11.2 96 227-339 1-142 (203)
233 PF01946 Thi4: Thi4 family; PD 97.9 7E-06 1.5E-10 77.5 2.7 64 58-124 17-80 (230)
234 PRK08850 2-octaprenyl-6-methox 97.9 5.2E-05 1.1E-09 81.0 9.8 34 57-90 3-36 (405)
235 TIGR01989 COQ6 Ubiquinone bios 97.9 0.00022 4.7E-09 77.0 14.6 33 59-91 1-37 (437)
236 PTZ00318 NADH dehydrogenase-li 97.9 6E-05 1.3E-09 81.0 10.2 94 59-176 174-281 (424)
237 TIGR03219 salicylate_mono sali 97.9 3.2E-05 6.9E-10 82.9 8.0 34 60-93 2-36 (414)
238 PRK06996 hypothetical protein; 97.9 4.9E-05 1.1E-09 81.0 9.3 38 54-91 7-48 (398)
239 PRK10262 thioredoxin reductase 97.9 7.6E-05 1.6E-09 77.1 10.4 103 58-178 146-251 (321)
240 PRK06292 dihydrolipoamide dehy 97.9 5.5E-05 1.2E-09 82.2 9.7 103 57-178 168-271 (460)
241 TIGR03169 Nterm_to_SelD pyridi 97.9 6.1E-05 1.3E-09 79.2 9.7 97 225-336 1-108 (364)
242 TIGR00136 gidA glucose-inhibit 97.9 0.00015 3.3E-09 79.6 12.8 33 59-91 1-33 (617)
243 PRK14989 nitrite reductase sub 97.9 7.7E-05 1.7E-09 86.3 11.1 99 224-335 4-113 (847)
244 TIGR01316 gltA glutamate synth 97.8 5.3E-05 1.2E-09 82.0 9.1 89 221-333 131-228 (449)
245 PRK11749 dihydropyrimidine deh 97.8 4.1E-05 9E-10 83.1 8.2 90 221-334 138-236 (457)
246 COG1231 Monoamine oxidase [Ami 97.8 0.00021 4.6E-09 74.5 12.9 45 56-100 5-49 (450)
247 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 6.9E-05 1.5E-09 79.6 9.4 35 58-92 2-36 (390)
248 PRK06617 2-octaprenyl-6-methox 97.8 6.4E-05 1.4E-09 79.4 8.8 33 58-90 1-33 (374)
249 PLN02172 flavin-containing mon 97.8 0.00025 5.4E-09 76.8 13.4 137 223-376 10-215 (461)
250 COG0578 GlpA Glycerol-3-phosph 97.8 0.00029 6.2E-09 76.0 13.5 80 277-360 163-256 (532)
251 PRK09853 putative selenate red 97.8 0.00012 2.5E-09 84.9 10.9 90 221-335 537-635 (1019)
252 PRK01747 mnmC bifunctional tRN 97.8 9.4E-05 2E-09 84.1 10.1 34 58-91 260-293 (662)
253 TIGR02032 GG-red-SF geranylger 97.8 0.00031 6.8E-09 71.0 13.0 93 225-333 2-146 (295)
254 KOG2853 Possible oxidoreductas 97.8 0.001 2.2E-08 66.4 15.8 37 57-93 85-125 (509)
255 PRK06847 hypothetical protein; 97.8 0.00033 7E-09 73.9 13.4 55 278-335 107-163 (375)
256 PLN02661 Putative thiazole syn 97.8 0.00018 3.8E-09 74.0 10.7 38 58-95 92-130 (357)
257 KOG1336 Monodehydroascorbate/f 97.8 0.00012 2.5E-09 76.6 9.4 103 58-181 213-319 (478)
258 KOG0029 Amine oxidase [Seconda 97.7 2.3E-05 5E-10 84.9 4.4 43 54-96 11-53 (501)
259 TIGR01318 gltD_gamma_fam gluta 97.7 0.00014 3E-09 79.1 10.1 91 221-335 139-238 (467)
260 TIGR02462 pyranose_ox pyranose 97.7 0.0012 2.7E-08 72.3 17.3 37 59-95 1-37 (544)
261 PRK12779 putative bifunctional 97.7 0.0001 2.2E-09 86.3 9.4 91 221-334 304-403 (944)
262 COG2907 Predicted NAD/FAD-bind 97.7 0.00034 7.4E-09 70.1 11.4 40 57-97 7-46 (447)
263 PRK12770 putative glutamate sy 97.7 0.0001 2.2E-09 77.3 8.3 97 222-333 17-128 (352)
264 PRK07538 hypothetical protein; 97.7 0.00014 3E-09 78.0 9.5 34 59-92 1-34 (413)
265 COG1252 Ndh NADH dehydrogenase 97.7 7E-05 1.5E-09 78.4 6.8 98 58-178 155-265 (405)
266 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 0.00011 2.3E-09 77.9 8.2 34 59-92 1-34 (433)
267 PF07992 Pyr_redox_2: Pyridine 97.7 0.0001 2.2E-09 70.3 7.4 139 225-378 1-200 (201)
268 PTZ00153 lipoamide dehydrogena 97.7 0.00017 3.8E-09 80.9 9.8 110 58-179 312-431 (659)
269 PLN00128 Succinate dehydrogena 97.7 0.00085 1.8E-08 75.5 15.2 57 277-333 186-248 (635)
270 PTZ00363 rab-GDP dissociation 97.7 0.0019 4.1E-08 69.4 17.2 41 57-97 3-43 (443)
271 PLN02546 glutathione reductase 97.6 0.00024 5.2E-09 78.6 10.6 102 57-178 251-353 (558)
272 TIGR01813 flavo_cyto_c flavocy 97.6 0.00025 5.4E-09 76.6 10.4 34 60-93 1-35 (439)
273 PRK12831 putative oxidoreducta 97.6 0.00017 3.7E-09 78.3 9.0 91 221-333 138-238 (464)
274 KOG1335 Dihydrolipoamide dehyd 97.6 0.00021 4.6E-09 72.4 8.8 106 56-178 209-317 (506)
275 COG3349 Uncharacterized conser 97.6 4.1E-05 8.9E-10 81.1 3.9 40 59-98 1-40 (485)
276 PTZ00139 Succinate dehydrogena 97.6 0.0027 5.9E-08 71.4 18.5 56 277-332 165-226 (617)
277 COG3075 GlpB Anaerobic glycero 97.6 0.0017 3.7E-08 64.7 14.6 71 260-332 242-314 (421)
278 PRK07236 hypothetical protein; 97.6 0.00051 1.1E-08 72.9 11.9 99 224-341 7-158 (386)
279 PRK12778 putative bifunctional 97.6 0.00023 4.9E-09 82.2 9.4 90 221-333 429-527 (752)
280 PF00743 FMO-like: Flavin-bind 97.6 0.00066 1.4E-08 74.7 12.5 138 224-377 2-195 (531)
281 PRK07208 hypothetical protein; 97.5 6.6E-05 1.4E-09 82.1 4.5 41 56-96 2-42 (479)
282 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00037 7.9E-09 76.2 10.2 90 221-334 141-239 (485)
283 TIGR01789 lycopene_cycl lycope 97.5 0.00037 8E-09 73.4 9.9 96 225-337 1-140 (370)
284 PRK07573 sdhA succinate dehydr 97.5 0.00076 1.6E-08 76.1 12.7 35 57-91 34-68 (640)
285 PLN02852 ferredoxin-NADP+ redu 97.5 0.00022 4.8E-09 77.2 7.9 92 222-335 25-126 (491)
286 PRK11883 protoporphyrinogen ox 97.5 6.7E-05 1.4E-09 81.2 4.0 38 59-96 1-40 (451)
287 PLN02268 probable polyamine ox 97.5 8.1E-05 1.8E-09 80.3 4.4 40 59-98 1-40 (435)
288 COG0445 GidA Flavin-dependent 97.5 9.6E-05 2.1E-09 78.3 4.6 106 58-174 4-157 (621)
289 PRK08958 sdhA succinate dehydr 97.5 0.0035 7.5E-08 70.2 17.1 57 277-333 142-204 (588)
290 TIGR00137 gid_trmFO tRNA:m(5)U 97.5 0.00063 1.4E-08 72.1 10.5 107 225-345 2-147 (433)
291 PRK06854 adenylylsulfate reduc 97.5 0.0047 1E-07 69.4 18.0 35 58-92 11-47 (608)
292 PRK12809 putative oxidoreducta 97.5 0.00045 9.7E-09 78.1 9.8 90 221-334 308-406 (639)
293 PRK12775 putative trifunctiona 97.5 0.00025 5.3E-09 83.8 8.0 92 221-334 428-528 (1006)
294 PRK05945 sdhA succinate dehydr 97.5 0.00048 1E-08 76.9 9.9 35 58-92 3-39 (575)
295 TIGR03143 AhpF_homolog putativ 97.4 0.0011 2.4E-08 73.8 12.5 94 224-336 5-115 (555)
296 PRK06452 sdhA succinate dehydr 97.4 0.00074 1.6E-08 75.2 11.0 36 57-92 4-39 (566)
297 PF01134 GIDA: Glucose inhibit 97.4 0.0023 5.1E-08 66.8 13.8 92 225-333 1-150 (392)
298 PF04820 Trp_halogenase: Trypt 97.4 0.00022 4.7E-09 77.2 6.4 31 60-90 1-34 (454)
299 PF06039 Mqo: Malate:quinone o 97.4 0.00026 5.7E-09 74.1 6.6 92 279-374 182-290 (488)
300 TIGR00551 nadB L-aspartate oxi 97.4 0.00078 1.7E-08 73.8 10.8 34 58-92 2-35 (488)
301 PRK12814 putative NADPH-depend 97.4 0.00055 1.2E-08 77.5 9.6 91 221-335 191-290 (652)
302 COG0493 GltD NADPH-dependent g 97.4 0.00054 1.2E-08 73.5 8.9 88 222-333 122-218 (457)
303 PRK06175 L-aspartate oxidase; 97.4 0.00098 2.1E-08 71.8 10.9 34 58-92 4-37 (433)
304 TIGR00562 proto_IX_ox protopor 97.4 0.00014 3.1E-09 79.0 4.2 39 58-96 2-44 (462)
305 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.001 2.2E-08 74.3 11.1 33 60-92 1-33 (566)
306 PRK12769 putative oxidoreducta 97.4 0.00071 1.5E-08 76.8 10.0 90 221-334 325-423 (654)
307 PLN02576 protoporphyrinogen ox 97.4 0.00018 3.9E-09 79.0 4.9 41 57-97 11-52 (496)
308 TIGR03315 Se_ygfK putative sel 97.3 0.00067 1.4E-08 79.1 9.5 90 221-335 535-633 (1012)
309 PRK07803 sdhA succinate dehydr 97.3 0.00081 1.7E-08 75.8 10.0 36 57-92 7-42 (626)
310 PRK08205 sdhA succinate dehydr 97.3 0.0064 1.4E-07 68.1 17.1 58 277-334 139-205 (583)
311 PRK06834 hypothetical protein; 97.3 0.0024 5.3E-08 69.8 13.1 52 280-334 102-155 (488)
312 PRK08626 fumarate reductase fl 97.3 0.0013 2.8E-08 74.4 11.2 35 58-92 5-39 (657)
313 PRK12416 protoporphyrinogen ox 97.3 0.00018 3.8E-09 78.4 4.1 40 58-97 1-46 (463)
314 PRK08244 hypothetical protein; 97.3 0.0031 6.7E-08 69.2 13.8 55 279-334 101-158 (493)
315 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.0071 1.5E-07 57.3 13.8 135 225-376 32-229 (262)
316 COG0492 TrxB Thioredoxin reduc 97.3 0.0024 5.3E-08 65.0 11.9 94 225-337 5-117 (305)
317 PLN02328 lysine-specific histo 97.3 0.00075 1.6E-08 76.9 8.9 45 53-97 233-277 (808)
318 KOG2495 NADH-dehydrogenase (ub 97.3 0.0002 4.3E-09 73.7 3.9 100 59-178 219-332 (491)
319 PRK12810 gltD glutamate syntha 97.3 0.0011 2.5E-08 72.2 10.1 90 221-334 141-239 (471)
320 TIGR02733 desat_CrtD C-3',4' d 97.3 0.00021 4.6E-09 78.3 4.4 39 59-97 2-40 (492)
321 PLN02463 lycopene beta cyclase 97.3 0.0027 5.8E-08 68.5 12.6 94 224-335 29-169 (447)
322 PRK01438 murD UDP-N-acetylmura 97.3 0.0017 3.6E-08 71.1 11.0 78 222-337 15-92 (480)
323 PRK06263 sdhA succinate dehydr 97.2 0.0016 3.5E-08 72.3 10.7 35 57-92 6-40 (543)
324 PTZ00188 adrenodoxin reductase 97.2 0.00094 2E-08 71.6 8.4 90 222-334 38-137 (506)
325 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00024 5.2E-09 74.9 3.8 35 58-92 2-36 (436)
326 PLN02529 lysine-specific histo 97.2 0.00035 7.5E-09 79.1 5.3 56 38-97 144-199 (738)
327 PLN02568 polyamine oxidase 97.2 0.00033 7.3E-09 77.2 4.8 42 56-97 3-49 (539)
328 PRK06184 hypothetical protein; 97.2 0.0047 1E-07 68.0 13.7 52 280-333 111-166 (502)
329 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00033 7.1E-09 73.4 4.4 38 59-96 2-39 (377)
330 PRK08163 salicylate hydroxylas 97.1 0.0045 9.7E-08 65.8 12.7 51 281-334 112-165 (396)
331 TIGR02731 phytoene_desat phyto 97.1 0.00033 7.1E-09 76.0 4.0 38 60-97 1-38 (453)
332 TIGR01372 soxA sarcosine oxida 97.1 0.0037 8E-08 74.2 13.0 100 223-336 163-287 (985)
333 PRK05714 2-octaprenyl-3-methyl 97.1 0.0034 7.5E-08 66.9 11.6 56 281-341 115-172 (405)
334 PRK08243 4-hydroxybenzoate 3-m 97.1 0.0047 1E-07 65.6 12.3 59 281-341 106-167 (392)
335 PRK06183 mhpA 3-(3-hydroxyphen 97.1 0.0063 1.4E-07 67.6 13.7 60 280-341 115-178 (538)
336 KOG1298 Squalene monooxygenase 97.1 0.0019 4.2E-08 65.7 8.4 35 56-90 43-77 (509)
337 PLN02927 antheraxanthin epoxid 97.1 0.00048 1E-08 77.0 4.7 36 56-91 79-114 (668)
338 PRK08773 2-octaprenyl-3-methyl 97.1 0.0068 1.5E-07 64.4 13.3 54 279-335 114-169 (392)
339 PRK07333 2-octaprenyl-6-methox 97.1 0.0057 1.2E-07 65.2 12.5 54 278-334 111-166 (403)
340 PRK01438 murD UDP-N-acetylmura 97.1 0.00066 1.4E-08 74.3 5.4 86 57-185 15-100 (480)
341 PLN02661 Putative thiazole syn 97.1 0.019 4.1E-07 59.3 15.6 137 225-377 94-298 (357)
342 PLN02697 lycopene epsilon cycl 97.1 0.0054 1.2E-07 67.4 12.4 95 224-335 109-248 (529)
343 PRK07190 hypothetical protein; 97.1 0.0078 1.7E-07 65.8 13.6 51 280-333 111-163 (487)
344 PRK07364 2-octaprenyl-6-methox 97.1 0.0074 1.6E-07 64.5 13.3 54 280-333 123-179 (415)
345 PRK07608 ubiquinone biosynthes 97.0 0.0061 1.3E-07 64.5 12.0 52 279-334 112-166 (388)
346 TIGR02730 carot_isom carotene 97.0 0.00056 1.2E-08 75.1 4.2 53 278-332 229-283 (493)
347 PTZ00367 squalene epoxidase; P 97.0 0.00068 1.5E-08 75.1 4.6 35 57-91 32-66 (567)
348 PRK09897 hypothetical protein; 97.0 0.0097 2.1E-07 65.4 13.5 46 288-335 117-166 (534)
349 TIGR01176 fum_red_Fp fumarate 97.0 0.0037 8E-08 69.8 10.4 35 58-92 3-39 (580)
350 KOG2844 Dimethylglycine dehydr 96.9 0.011 2.4E-07 64.2 12.8 84 249-337 159-245 (856)
351 PRK08132 FAD-dependent oxidore 96.9 0.012 2.6E-07 65.5 13.8 59 280-341 127-189 (547)
352 PRK12266 glpD glycerol-3-phosp 96.9 0.00093 2E-08 73.5 4.6 60 278-337 155-218 (508)
353 PRK13369 glycerol-3-phosphate 96.9 0.00097 2.1E-08 73.3 4.7 39 56-94 4-42 (502)
354 KOG2614 Kynurenine 3-monooxyge 96.9 0.00088 1.9E-08 69.0 3.9 37 58-94 2-38 (420)
355 PRK08294 phenol 2-monooxygenas 96.9 0.0015 3.4E-08 73.6 6.1 36 57-92 31-67 (634)
356 PRK07588 hypothetical protein; 96.8 0.013 2.8E-07 62.2 12.9 40 291-333 115-156 (391)
357 COG1148 HdrA Heterodisulfide r 96.8 0.0038 8.3E-08 65.4 8.3 76 217-306 118-206 (622)
358 KOG2852 Possible oxidoreductas 96.8 0.0026 5.6E-08 62.4 6.6 36 55-90 7-48 (380)
359 PRK05192 tRNA uridine 5-carbox 96.8 0.0088 1.9E-07 66.1 11.6 92 225-333 6-155 (618)
360 COG0654 UbiH 2-polyprenyl-6-me 96.8 0.014 3E-07 62.0 13.0 100 225-342 4-167 (387)
361 COG0644 FixC Dehydrogenases (f 96.8 0.018 3.9E-07 61.3 13.8 93 225-333 5-150 (396)
362 PLN02676 polyamine oxidase 96.8 0.0011 2.4E-08 72.5 4.5 42 57-98 25-67 (487)
363 PRK08274 tricarballylate dehyd 96.8 0.00096 2.1E-08 72.7 4.1 56 278-333 131-190 (466)
364 PRK07121 hypothetical protein; 96.8 0.0015 3.2E-08 71.7 5.5 40 57-96 19-58 (492)
365 KOG0399 Glutamate synthase [Am 96.8 0.0052 1.1E-07 69.9 9.6 93 218-334 1780-1881(2142)
366 PF01946 Thi4: Thi4 family; PD 96.8 0.032 7E-07 53.1 13.5 136 224-376 18-218 (230)
367 TIGR01984 UbiH 2-polyprenyl-6- 96.8 0.015 3.2E-07 61.5 12.9 53 279-334 106-161 (382)
368 PRK06753 hypothetical protein; 96.8 0.011 2.3E-07 62.4 11.6 45 292-341 110-156 (373)
369 PRK13984 putative oxidoreducta 96.8 0.0029 6.3E-08 71.3 7.6 90 221-334 281-379 (604)
370 PRK08641 sdhA succinate dehydr 96.8 0.0012 2.7E-08 73.8 4.5 37 57-93 2-38 (589)
371 PRK08020 ubiF 2-octaprenyl-3-m 96.8 0.01 2.2E-07 62.9 11.3 54 279-335 113-169 (391)
372 PRK12771 putative glutamate sy 96.7 0.0037 8E-08 69.8 8.1 89 221-334 135-233 (564)
373 KOG2415 Electron transfer flav 96.7 0.0012 2.6E-08 67.6 3.5 45 54-98 72-122 (621)
374 PRK05868 hypothetical protein; 96.7 0.018 4E-07 60.7 12.6 48 290-342 116-165 (372)
375 PRK11445 putative oxidoreducta 96.7 0.03 6.4E-07 58.6 14.1 46 289-334 109-156 (351)
376 TIGR00275 flavoprotein, HI0933 96.7 0.013 2.7E-07 62.6 11.1 54 278-335 105-160 (400)
377 COG2072 TrkA Predicted flavopr 96.7 0.014 3E-07 63.0 11.5 135 224-377 9-187 (443)
378 PF06100 Strep_67kDa_ant: Stre 96.7 0.014 3.1E-07 62.1 11.1 54 278-333 207-272 (500)
379 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.015 3.3E-07 61.2 11.6 53 279-334 107-162 (385)
380 KOG0685 Flavin-containing amin 96.6 0.0016 3.6E-08 68.1 3.9 40 57-96 20-60 (498)
381 TIGR01790 carotene-cycl lycope 96.6 0.019 4.1E-07 60.9 12.2 93 225-335 1-141 (388)
382 PRK06475 salicylate hydroxylas 96.6 0.03 6.5E-07 59.7 13.4 60 279-342 108-172 (400)
383 PRK09126 hypothetical protein; 96.6 0.025 5.4E-07 60.0 12.8 49 282-333 114-165 (392)
384 PRK08013 oxidoreductase; Provi 96.6 0.02 4.3E-07 61.0 11.9 57 280-341 113-172 (400)
385 TIGR02023 BchP-ChlP geranylger 96.5 0.028 6.2E-07 59.6 12.8 53 280-333 94-153 (388)
386 COG0562 Glf UDP-galactopyranos 96.5 0.0024 5.1E-08 63.7 4.1 40 58-97 1-40 (374)
387 PRK08255 salicylyl-CoA 5-hydro 96.5 0.0018 4E-08 74.7 3.8 34 59-92 1-36 (765)
388 PRK07045 putative monooxygenas 96.5 0.042 9.2E-07 58.2 13.9 57 280-341 108-169 (388)
389 PRK07057 sdhA succinate dehydr 96.5 0.0025 5.4E-08 71.4 4.7 36 56-91 10-45 (591)
390 TIGR02360 pbenz_hydroxyl 4-hyd 96.5 0.032 6.9E-07 59.3 12.8 59 281-341 106-167 (390)
391 PRK08850 2-octaprenyl-6-methox 96.5 0.022 4.8E-07 60.7 11.7 49 282-333 115-166 (405)
392 KOG2404 Fumarate reductase, fl 96.5 0.01 2.2E-07 59.1 7.9 35 59-93 10-44 (477)
393 PRK08849 2-octaprenyl-3-methyl 96.5 0.025 5.4E-07 59.9 11.7 46 291-341 124-171 (384)
394 PRK12837 3-ketosteroid-delta-1 96.4 0.0025 5.4E-08 70.2 4.1 37 58-95 7-43 (513)
395 PRK07804 L-aspartate oxidase; 96.4 0.0034 7.4E-08 69.6 5.1 37 57-93 15-51 (541)
396 PRK06617 2-octaprenyl-6-methox 96.4 0.038 8.3E-07 58.3 12.6 57 279-341 105-164 (374)
397 PRK12266 glpD glycerol-3-phosp 96.4 0.037 8.1E-07 60.9 12.8 32 225-270 8-39 (508)
398 PRK06185 hypothetical protein; 96.4 0.056 1.2E-06 57.6 13.8 53 279-333 109-167 (407)
399 PF00732 GMC_oxred_N: GMC oxid 96.3 0.0034 7.4E-08 63.8 4.2 67 279-348 194-268 (296)
400 PRK06996 hypothetical protein; 96.3 0.038 8.2E-07 58.8 12.4 55 278-333 115-172 (398)
401 PRK07538 hypothetical protein; 96.3 0.046 1E-06 58.5 13.1 58 282-341 106-169 (413)
402 PRK06481 fumarate reductase fl 96.3 0.045 9.7E-07 60.3 13.1 52 280-332 192-248 (506)
403 PF05834 Lycopene_cycl: Lycope 96.3 0.032 6.9E-07 58.9 11.5 95 226-335 2-142 (374)
404 PRK07494 2-octaprenyl-6-methox 96.3 0.035 7.5E-07 58.8 11.9 51 280-334 113-166 (388)
405 PLN03000 amine oxidase 96.3 0.0039 8.4E-08 71.4 4.7 42 57-98 183-224 (881)
406 TIGR02028 ChlP geranylgeranyl 96.3 0.053 1.1E-06 57.8 13.2 53 280-333 95-158 (398)
407 PRK12834 putative FAD-binding 96.3 0.0039 8.4E-08 69.4 4.5 35 57-91 3-37 (549)
408 PF12831 FAD_oxidored: FAD dep 96.3 0.0045 9.7E-08 66.6 4.8 92 225-332 1-147 (428)
409 PRK09078 sdhA succinate dehydr 96.2 0.0043 9.3E-08 69.6 4.4 35 57-91 11-45 (598)
410 PRK06567 putative bifunctional 96.2 0.0081 1.8E-07 69.3 6.5 36 221-270 381-416 (1028)
411 PRK07395 L-aspartate oxidase; 96.2 0.0059 1.3E-07 67.8 5.3 37 57-94 8-44 (553)
412 PRK08071 L-aspartate oxidase; 96.2 0.0055 1.2E-07 67.5 4.9 36 58-94 3-38 (510)
413 PRK06069 sdhA succinate dehydr 96.2 0.0042 9.1E-08 69.5 4.0 35 58-92 5-42 (577)
414 PRK12844 3-ketosteroid-delta-1 96.2 0.0044 9.5E-08 69.0 4.1 39 58-96 6-44 (557)
415 TIGR03219 salicylate_mono sali 96.2 0.036 7.9E-07 59.3 11.1 40 292-334 117-158 (414)
416 PRK12839 hypothetical protein; 96.1 0.0057 1.2E-07 68.2 4.8 40 57-96 7-46 (572)
417 PRK12835 3-ketosteroid-delta-1 96.1 0.006 1.3E-07 68.2 4.9 39 57-95 10-48 (584)
418 PRK12845 3-ketosteroid-delta-1 96.1 0.0063 1.4E-07 67.7 5.0 45 55-100 13-57 (564)
419 KOG1399 Flavin-containing mono 96.1 0.054 1.2E-06 58.1 11.8 102 223-339 6-157 (448)
420 PLN00093 geranylgeranyl diphos 96.1 0.066 1.4E-06 58.0 12.7 53 280-333 134-197 (450)
421 PF13454 NAD_binding_9: FAD-NA 96.1 0.08 1.7E-06 48.4 11.4 34 227-269 1-34 (156)
422 KOG2311 NAD/FAD-utilizing prot 96.1 0.0087 1.9E-07 62.6 5.4 35 56-90 26-60 (679)
423 TIGR01813 flavo_cyto_c flavocy 96.1 0.075 1.6E-06 57.4 13.0 54 279-333 131-190 (439)
424 PLN02815 L-aspartate oxidase 96.0 0.0074 1.6E-07 67.4 5.2 37 57-94 28-64 (594)
425 TIGR02061 aprA adenosine phosp 96.0 0.0055 1.2E-07 68.6 3.9 33 60-92 1-37 (614)
426 PRK05732 2-octaprenyl-6-methox 96.0 0.072 1.6E-06 56.5 12.3 51 281-334 115-168 (395)
427 KOG1346 Programmed cell death 96.0 0.012 2.6E-07 60.4 5.8 103 57-178 346-452 (659)
428 PLN02976 amine oxidase 95.9 0.0067 1.5E-07 72.1 4.4 40 57-96 692-731 (1713)
429 TIGR00136 gidA glucose-inhibit 95.9 0.072 1.6E-06 59.0 12.1 50 282-334 100-153 (617)
430 PRK08275 putative oxidoreducta 95.9 0.0059 1.3E-07 68.0 3.6 36 57-92 8-45 (554)
431 PRK05335 tRNA (uracil-5-)-meth 95.9 0.026 5.7E-07 59.7 8.1 35 225-273 4-38 (436)
432 PRK08274 tricarballylate dehyd 95.8 0.13 2.7E-06 56.1 13.6 32 225-270 6-37 (466)
433 PRK12843 putative FAD-binding 95.8 0.011 2.3E-07 66.2 5.2 41 57-97 15-55 (578)
434 PTZ00306 NADH-dependent fumara 95.8 0.011 2.4E-07 71.4 5.4 40 56-95 407-446 (1167)
435 PRK02106 choline dehydrogenase 95.7 0.011 2.3E-07 66.1 4.7 36 57-92 4-40 (560)
436 PLN02985 squalene monooxygenas 95.7 0.18 3.8E-06 55.6 13.9 59 279-341 148-212 (514)
437 COG1251 NirB NAD(P)H-nitrite r 95.6 0.053 1.2E-06 60.1 9.5 127 225-377 5-144 (793)
438 PRK09231 fumarate reductase fl 95.6 0.0094 2E-07 66.7 3.8 35 58-92 4-40 (582)
439 TIGR01811 sdhA_Bsu succinate d 95.6 0.0072 1.6E-07 67.8 2.9 31 61-91 1-31 (603)
440 KOG1276 Protoporphyrinogen oxi 95.6 0.014 2.9E-07 60.6 4.5 40 57-96 10-51 (491)
441 PF13434 K_oxygenase: L-lysine 95.6 0.02 4.2E-07 59.6 5.8 38 55-92 187-226 (341)
442 PRK08294 phenol 2-monooxygenas 95.6 0.14 3.1E-06 57.9 13.1 61 280-342 143-215 (634)
443 PRK09077 L-aspartate oxidase; 95.6 0.011 2.4E-07 65.5 4.2 36 57-93 7-42 (536)
444 COG1206 Gid NAD(FAD)-utilizing 95.6 0.012 2.7E-07 58.7 3.9 35 57-91 2-36 (439)
445 KOG4716 Thioredoxin reductase 95.5 0.014 3E-07 58.5 4.2 106 55-177 195-302 (503)
446 COG4529 Uncharacterized protei 95.5 0.1 2.2E-06 55.4 10.7 36 225-271 3-38 (474)
447 PRK14106 murD UDP-N-acetylmura 95.5 0.026 5.7E-07 61.1 6.5 35 57-91 4-38 (450)
448 COG3380 Predicted NAD/FAD-depe 95.4 0.067 1.5E-06 52.4 8.3 34 225-272 3-36 (331)
449 PF04820 Trp_halogenase: Trypt 95.4 0.12 2.5E-06 56.1 11.1 49 282-333 158-209 (454)
450 PRK08275 putative oxidoreducta 95.3 0.21 4.6E-06 55.6 13.3 55 280-334 139-199 (554)
451 PRK13800 putative oxidoreducta 95.3 0.016 3.4E-07 68.3 4.5 36 57-92 12-47 (897)
452 COG1053 SdhA Succinate dehydro 95.3 0.015 3.2E-07 64.3 3.8 37 56-92 4-40 (562)
453 PF13241 NAD_binding_7: Putati 95.1 0.026 5.7E-07 47.7 4.0 34 57-90 6-39 (103)
454 PRK13369 glycerol-3-phosphate 95.1 0.23 5E-06 54.6 12.5 56 281-337 158-217 (502)
455 PRK07512 L-aspartate oxidase; 95.1 0.02 4.3E-07 63.2 4.0 33 58-92 9-41 (513)
456 PRK01747 mnmC bifunctional tRN 95.0 0.21 4.5E-06 57.0 12.3 53 281-337 411-465 (662)
457 TIGR01812 sdhA_frdA_Gneg succi 95.0 0.26 5.7E-06 55.1 12.8 53 281-333 132-189 (566)
458 PRK07121 hypothetical protein; 94.9 0.34 7.4E-06 53.2 13.3 53 279-333 178-237 (492)
459 KOG2960 Protein involved in th 94.9 0.012 2.6E-07 55.1 1.4 39 58-96 76-116 (328)
460 COG2303 BetA Choline dehydroge 94.8 0.032 7E-07 61.8 4.8 37 56-92 5-41 (542)
461 KOG0404 Thioredoxin reductase 94.6 0.17 3.8E-06 48.1 8.2 105 225-335 10-124 (322)
462 TIGR02352 thiamin_ThiO glycine 94.5 0.38 8.2E-06 49.5 11.6 83 249-336 110-194 (337)
463 TIGR01810 betA choline dehydro 94.4 0.037 8E-07 61.4 4.2 33 60-92 1-34 (532)
464 KOG4254 Phytoene desaturase [C 94.4 0.042 9.1E-07 57.4 4.0 51 56-106 12-62 (561)
465 PF13450 NAD_binding_8: NAD(P) 94.3 0.08 1.7E-06 41.0 4.6 32 228-273 1-32 (68)
466 TIGR01470 cysG_Nterm siroheme 94.3 0.048 1E-06 52.3 4.1 34 57-90 8-41 (205)
467 PRK06719 precorrin-2 dehydroge 94.3 0.055 1.2E-06 49.6 4.3 34 57-90 12-45 (157)
468 COG3573 Predicted oxidoreducta 94.2 0.059 1.3E-06 54.1 4.4 36 57-92 4-39 (552)
469 KOG2665 Predicted FAD-dependen 94.0 0.042 9.1E-07 54.8 3.0 38 56-93 46-85 (453)
470 PRK06263 sdhA succinate dehydr 94.0 0.58 1.3E-05 52.1 12.4 54 280-333 136-195 (543)
471 KOG3851 Sulfide:quinone oxidor 93.9 0.029 6.2E-07 56.0 1.8 98 222-335 38-145 (446)
472 TIGR03862 flavo_PP4765 unchara 93.9 0.31 6.8E-06 51.1 9.6 82 265-348 71-160 (376)
473 PRK08255 salicylyl-CoA 5-hydro 93.9 0.21 4.6E-06 57.8 9.2 35 225-271 2-36 (765)
474 KOG0405 Pyridine nucleotide-di 93.9 0.11 2.4E-06 52.6 5.7 103 55-179 186-291 (478)
475 COG0445 GidA Flavin-dependent 93.9 0.16 3.5E-06 54.6 7.2 23 224-246 5-27 (621)
476 PRK06175 L-aspartate oxidase; 93.8 0.69 1.5E-05 49.8 12.4 56 278-333 128-187 (433)
477 PF01210 NAD_Gly3P_dh_N: NAD-d 93.8 0.048 1E-06 49.9 3.0 32 60-91 1-32 (157)
478 PLN02785 Protein HOTHEAD 93.8 0.07 1.5E-06 59.6 4.8 36 56-92 53-88 (587)
479 KOG2755 Oxidoreductase [Genera 93.8 0.093 2E-06 51.1 4.8 92 225-336 1-105 (334)
480 TIGR00551 nadB L-aspartate oxi 93.5 0.9 1.9E-05 49.8 12.8 55 279-335 129-189 (488)
481 PRK06718 precorrin-2 dehydroge 93.5 0.085 1.8E-06 50.5 4.1 34 57-90 9-42 (202)
482 TIGR02485 CobZ_N-term precorri 93.4 0.043 9.3E-07 59.1 2.2 54 278-332 123-180 (432)
483 PF01494 FAD_binding_3: FAD bi 93.4 0.076 1.6E-06 54.9 4.0 36 225-274 3-38 (356)
484 PRK08401 L-aspartate oxidase; 93.3 1.1 2.4E-05 48.7 13.1 53 279-335 121-175 (466)
485 PRK14106 murD UDP-N-acetylmura 93.2 0.53 1.1E-05 51.0 10.2 77 222-335 4-80 (450)
486 COG3634 AhpF Alkyl hydroperoxi 93.1 0.23 4.9E-06 50.3 6.5 111 221-336 209-326 (520)
487 COG0569 TrkA K+ transport syst 93.1 0.081 1.8E-06 51.6 3.4 33 59-91 1-33 (225)
488 PRK07804 L-aspartate oxidase; 93.0 1.3 2.8E-05 49.2 13.1 54 279-333 145-208 (541)
489 PRK02705 murD UDP-N-acetylmura 92.8 0.094 2E-06 57.0 3.8 33 60-92 2-34 (459)
490 PRK05945 sdhA succinate dehydr 92.7 1 2.2E-05 50.4 12.0 54 281-334 138-196 (575)
491 TIGR03377 glycerol3P_GlpA glyc 92.6 0.76 1.6E-05 50.8 10.6 85 249-336 102-191 (516)
492 KOG2415 Electron transfer flav 92.6 1.9 4.1E-05 45.0 12.3 115 225-348 78-268 (621)
493 COG1086 Predicted nucleoside-d 92.6 0.26 5.6E-06 53.4 6.5 40 56-95 114-155 (588)
494 PRK06452 sdhA succinate dehydr 92.4 1.3 2.9E-05 49.5 12.2 53 280-332 138-195 (566)
495 TIGR01811 sdhA_Bsu succinate d 92.4 1.3 2.7E-05 50.0 12.1 43 291-333 146-194 (603)
496 PF02737 3HCDH_N: 3-hydroxyacy 92.3 0.12 2.5E-06 48.6 3.2 32 60-91 1-32 (180)
497 KOG0029 Amine oxidase [Seconda 92.2 0.17 3.8E-06 55.2 4.9 38 222-273 14-51 (501)
498 KOG2404 Fumarate reductase, fl 92.1 0.81 1.8E-05 46.0 8.8 41 292-333 159-204 (477)
499 PRK06069 sdhA succinate dehydr 92.1 1.8 3.9E-05 48.6 12.9 51 284-334 143-199 (577)
500 PRK15116 sulfur acceptor prote 92.1 0.19 4.2E-06 50.1 4.6 35 57-91 29-64 (268)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=7.1e-90 Score=684.25 Aligned_cols=488 Identities=60% Similarity=1.005 Sum_probs=441.6
Q ss_pred CCccchhhhhhhcccCCCchhHHHHHHHhhccceeeeecccCCCCCcCCCCCCCCCCCCeEEEECCcHHHHHHHHhcCCC
Q 007975 1 MRGYTFYERVSRAFHDYSSLSKLIVISTVGGGSLIAYSEANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNP 80 (583)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~aGl~aA~~L~~~ 80 (583)
|.....+.|..+.+...++..+.+..++++++....|++.++... .+..+...++++|||+|+||+|.++++.|...
T Consensus 1 m~~~~~~~r~s~~~~~~~s~~k~l~~st~~g~~~~~y~~an~~~~---~~~~~~~~kKk~vVVLGsGW~a~S~lk~ldts 77 (491)
T KOG2495|consen 1 MLFLSSLARISRTTSSSKSTLKILLASTLSGGGLVAYSEANPSEK---VPGPKNGGKKKRVVVLGSGWGAISLLKKLDTS 77 (491)
T ss_pred CchhhhHHhhccccccCcchhhhhhhheeccceeEEEecCCcccc---CCCCCCCCCCceEEEEcCchHHHHHHHhcccc
Confidence 455566667777777778888888999998888888886664443 33344566789999999999999999999999
Q ss_pred CCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceE
Q 007975 81 SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEF 160 (583)
Q Consensus 81 g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~ 160 (583)
-|+|+||++++||.|+|++|....|+++.+++++|++.+.++.+.++.|+++++..||++++.|.++.....+. ..++
T Consensus 78 ~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~--~~e~ 155 (491)
T KOG2495|consen 78 LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSS--DKEF 155 (491)
T ss_pred ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCC--ccee
Confidence 99999999999999999999999999999999999999998877688999999999999999999987654321 2357
Q ss_pred EeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHH
Q 007975 161 CMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAA 240 (583)
Q Consensus 161 ~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~ 240 (583)
.+.|||||+|+|+.+++|+|||+.|++++++..+||+++|+++.+++|+++++.++++++++.+++|||||||||+|+|+
T Consensus 156 ~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAa 235 (491)
T KOG2495|consen 156 VIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAA 235 (491)
T ss_pred eecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCCeEEEEEcCCCeeE
Q 007975 241 ELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETS 320 (583)
Q Consensus 241 ~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~ 320 (583)
+|++++.+|+.+.||++.+..+|||+++.|.+|++|+..+.+++++.+.+.||++.+++.|+.|++..+..... +|+.+
T Consensus 236 EL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~-~g~~~ 314 (491)
T KOG2495|consen 236 ELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTK-DGEIE 314 (491)
T ss_pred HHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcC-CCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998874 78888
Q ss_pred EeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCEEEcCcccccccchhhhHHHHHhhhcccCCCCC
Q 007975 321 SMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGT 400 (583)
Q Consensus 321 ~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~a~~~~~g~ 400 (583)
+||+.++||++|+.+.|.++.|.++++-..|.++.||++||+++.+||||+|||+..
T Consensus 315 ~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~----------------------- 371 (491)
T KOG2495|consen 315 EIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ----------------------- 371 (491)
T ss_pred eecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccc-----------------------
Confidence 899999999999999999999988776644668999999999999999999999943
Q ss_pred chhHHHHHHHHhhhcccchhHHHhhhcccCchhhhhhhhhccccccccccCHHHHHHHhhhccccCCCCCchhhhHHHHH
Q 007975 401 LTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEEFKKALSEVDSQMKNLPATAQVAAQQG 480 (583)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~taq~A~~qg 480 (583)
..+++|||+|.|||
T Consensus 372 ------------------------------------------------------------------~~~~~tAQVA~QqG 385 (491)
T KOG2495|consen 372 ------------------------------------------------------------------RGLKPTAQVAEQQG 385 (491)
T ss_pred ------------------------------------------------------------------ccCccHHHHHHHHH
Confidence 24688999999999
Q ss_pred HHHHHHHHhhhhhccCCCCCc-cccCCCCCCCCCCeeecCcceEEccCCCeeeecC-Cc-ccchhHHHHHHHHHHHHHhc
Q 007975 481 KYLAKCFNRMEEAEKNPEGPL-RFRGTGRHRFQPFRYQHLGQFAPLGGEQTAAQLP-WD-WVSIGRSSQWLWYSVYTSKL 557 (583)
Q Consensus 481 ~~~a~~i~~~~~~~~~~~~~~-~~~g~~~~~~~pf~~~~~G~~~~lG~~~av~~~~-~~-~~~~G~~a~~~w~~~~~~~~ 557 (583)
+|||+||+.+.+.+..++... ++.+......+||+|+|+|+|||||+++|+++++ |. +...|..+|++||++|+.++
T Consensus 386 ~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~~g~~~~~~G~~s~~lWrS~Yls~~ 465 (491)
T KOG2495|consen 386 AYLAKNFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLPVGKMWVSAGGSSFWLWRSAYLSKL 465 (491)
T ss_pred HHHHHHHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCccCCeeeeccchhhHHHHHHHHHHh
Confidence 999999999988876654443 5555555678999999999999999999999998 66 77889999999999999999
Q ss_pred cchhhHHHHHHHHHHhhhcccCCCCC
Q 007975 558 VSWRTRALVVSDWTRRFIFGRDSSGI 583 (583)
Q Consensus 558 ~~~~~~~~~~~~w~~~~~~~~~~~~~ 583 (583)
.|||||++|+.||++.++||||+|++
T Consensus 466 ~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 466 VSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred hhhhhheeeeeheeeeEEeccccccC
Confidence 99999999999999999999999975
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1e-77 Score=616.93 Aligned_cols=401 Identities=36% Similarity=0.583 Sum_probs=363.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
++++||||||||+|+.+|..|.+. +.+|||||++++|.|+|++|++++|.++..++..+++.++++.+ +++|++++|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~-~v~~~~~~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG-NVQFVQGEV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC-ceEEEEEEE
Confidence 578999999999999999999965 49999999999999999999999999999999999999999766 688999999
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
++||+++++|.+.+.. .+.||+||+|+|+++++|++||+.|+++++++++||.++++++...|+.++...
T Consensus 81 ~~ID~~~k~V~~~~~~----------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~ 150 (405)
T COG1252 81 TDIDRDAKKVTLADLG----------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE 150 (405)
T ss_pred EEEcccCCEEEeCCCc----------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998732 899999999999999999999999999999999999999999999999987542
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCE
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~ 294 (583)
.+ +..++|+|||||+||+|+|++|.++..+.+.+ |...+.+.+|+||++++++||.|++++++++++.|+++||+
T Consensus 151 ~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 151 DD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE 225 (405)
T ss_pred cc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence 21 45679999999999999999999998877666 44433478999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCEEEcCcc
Q 007975 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGDC 374 (583)
Q Consensus 295 v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VyAiGD~ 374 (583)
|++++.|++|++++|++.+ |++ +|++|++|||+|++++|.++.+. ....+.+|++.||++||++++|||||+|||
T Consensus 226 v~l~~~Vt~v~~~~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~-~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~ 300 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKD---GEE-EIPADTVVWAAGVRASPLLKDLS-GLETDRRGRLVVNPTLQVPGHPDIFAAGDC 300 (405)
T ss_pred EEcCCceEEECCCcEEEcc---CCe-eEecCEEEEcCCCcCChhhhhcC-hhhhccCCCEEeCCCcccCCCCCeEEEecc
Confidence 9999999999999999987 553 49999999999999999876651 122366799999999999999999999999
Q ss_pred cccccchhhhHHHHHhhhcccCCCCCchhHHHHHHHHhhhcccchhHHHhhhcccCchhhhhhhhhccccccccccCHHH
Q 007975 375 ATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEE 454 (583)
Q Consensus 375 a~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (583)
|...++
T Consensus 301 A~~~~~-------------------------------------------------------------------------- 306 (405)
T COG1252 301 AAVIDP-------------------------------------------------------------------------- 306 (405)
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 986421
Q ss_pred HHHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhhhhhccCCCCCccccCCCCCCCCCCeeecCcceEEccCCCeeeec
Q 007975 455 FKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGGEQTAAQL 534 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~p~taq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~g~~~~~~~pf~~~~~G~~~~lG~~~av~~~ 534 (583)
+|+|++||+|+|||+|+|+||.+.++| .+++||+|+++|+|+|||++.||+++
T Consensus 307 ------------~p~P~tAQ~A~Qqg~~~a~ni~~~l~g---------------~~l~~f~y~~~Gtl~~lG~~~av~~~ 359 (405)
T COG1252 307 ------------RPVPPTAQAAHQQGEYAAKNIKARLKG---------------KPLKPFKYKDKGTLASLGDFSAVADL 359 (405)
T ss_pred ------------CCCCChhHHHHHHHHHHHHHHHHHhcC---------------CCCCCCcccceEEEEEccCCceeEEe
Confidence 578999999999999999999888665 48899999999999999999999999
Q ss_pred CCcccchhHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccCC
Q 007975 535 PWDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDS 580 (583)
Q Consensus 535 ~~~~~~~G~~a~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 580 (583)
. ...++|++||++|+.+|+.+++++++++++..+|++.++++++.
T Consensus 360 g-~~~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 360 G-GVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred c-ceeeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 5 47889999999999999999999999999999999999999875
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=7.4e-67 Score=558.15 Aligned_cols=416 Identities=45% Similarity=0.761 Sum_probs=363.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
...+++|||||||+||+.+|+.|.+.+++|||||+++++.|.|+++++..|..+.+++..+++..+...+ ++|++++|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~--~~~i~~~V 84 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLP--NRYLRAVV 84 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCC--eEEEEEEE
Confidence 3457899999999999999999987789999999999999999999999999999999999999888776 67899999
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
+.||++++.|.+..............++.||+||||||+.++.+++||..++.+++++++++.++++++.++++.+..++
T Consensus 85 ~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 164 (424)
T PTZ00318 85 YDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164 (424)
T ss_pred EEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998832110000000113799999999999999999999999999999999999999999999988877665
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCE
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGID 294 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~ 294 (583)
.+.+...+.++++|||||++|+|+|.+|.++.++...+.||.++++.+|+|+++.+++++.+++.+++.+++.|+++||+
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 55555566779999999999999999999998877778888877789999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCCCCEEEcC
Q 007975 295 VKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALG 372 (583)
Q Consensus 295 v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiG 372 (583)
++++++|++++++.+++.+ |++ +++|++||++|+++++++ +.+++ +++|+|.||++||++++|||||+|
T Consensus 245 v~~~~~v~~v~~~~v~~~~---g~~--i~~d~vi~~~G~~~~~~~----~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiG 315 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKD---GEV--IPTGLVVWSTGVGPGPLT----KQLKVDKTSRGRISVDDHLRVKPIPNVFALG 315 (424)
T ss_pred EEeCCeEEEEeCCEEEECC---CCE--EEccEEEEccCCCCcchh----hhcCCcccCCCcEEeCCCcccCCCCCEEEEe
Confidence 9999999999998887654 765 999999999998777543 34454 667999999999988999999999
Q ss_pred cccccccchhhhHHHHHhhhcccCCCCCchhHHHHHHHHhhhcccchhHHHhhhcccCchhhhhhhhhccccccccccCH
Q 007975 373 DCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNI 452 (583)
Q Consensus 373 D~a~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (583)
||+..+.
T Consensus 316 D~a~~~~------------------------------------------------------------------------- 322 (424)
T PTZ00318 316 DCAANEE------------------------------------------------------------------------- 322 (424)
T ss_pred ccccCCC-------------------------------------------------------------------------
Confidence 9997531
Q ss_pred HHHHHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhhhhhccCCCCCccccCCCCCCCCCCeeecCcceEEccCCCeee
Q 007975 453 EEFKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQHLGQFAPLGGEQTAA 532 (583)
Q Consensus 453 ~~~~~~~~~~~~~~~~~p~taq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~g~~~~~~~pf~~~~~G~~~~lG~~~av~ 532 (583)
.++|++++.|++||.++|+||.+.+.++ .+.+||.|.++|+|++||+++||+
T Consensus 323 --------------~~~~~~~~~A~~qg~~~A~ni~~~l~g~--------------~~~~~~~~~~~g~~~~lG~~~av~ 374 (424)
T PTZ00318 323 --------------RPLPTLAQVASQQGVYLAKEFNNELKGK--------------PMSKPFVYRSLGSLAYLGNYSAIV 374 (424)
T ss_pred --------------CCCCCchHHHHHHHHHHHHHHHHHhcCC--------------CCCCCCeecCCceEEEecCCceEE
Confidence 3579999999999999999998876542 247899999999999999999999
Q ss_pred ecCCcccchhHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccCCCCC
Q 007975 533 QLPWDWVSIGRSSQWLWYSVYTSKLVSWRTRALVVSDWTRRFIFGRDSSGI 583 (583)
Q Consensus 533 ~~~~~~~~~G~~a~~~w~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 583 (583)
++.+ +.+.|++||++|+++|+.++++|+++++++++|++.+||+||+.|+
T Consensus 375 ~~~~-~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 375 QLGA-FDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred EcCC-ceEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9865 6788999999999999999999999999999999999999999874
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.4e-48 Score=408.62 Aligned_cols=356 Identities=23% Similarity=0.341 Sum_probs=297.1
Q ss_pred eEEEECCcHHHHHHHHhcC---CCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 60 KVVVLGTGWAGTSFLKNLN---NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~---~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
+|||||||+||+.+|.+|+ .++++|+|||+++++.|.+.++.+..|....+++..++++++++.+ ++|+.++|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g--v~~~~~~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAG--ARFVIAEATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcC--CEEEEEEEEE
Confidence 5999999999999999996 3578999999999999999999988888888888889999998887 5678899999
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 216 (583)
||+++++|.+.++. ++.||+||||||+.++.+++||..++.+.+++++++..+++.+..+++..
T Consensus 79 id~~~~~V~~~~g~----------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (364)
T TIGR03169 79 IDPDRRKVLLANRP----------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------ 142 (364)
T ss_pred EecccCEEEECCCC----------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC------
Confidence 99999999987653 79999999999999999999998888999999999998777776543210
Q ss_pred HHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEE
Q 007975 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (583)
Q Consensus 217 ~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~ 296 (583)
...++++|||||++|+|+|.+|.+..++ .....+|+++ ..+.+++.+++.+.+.+.+.|+++||+++
T Consensus 143 ----~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 209 (364)
T TIGR03169 143 ----PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVH 209 (364)
T ss_pred ----CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 1245999999999999999999875421 0012589999 66788888999999999999999999999
Q ss_pred eCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCCCCEEEcCcc
Q 007975 297 LGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDC 374 (583)
Q Consensus 297 ~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~ 374 (583)
++++|++++++.+++.+ |++ +++|.+|||+|..+++ ++...++ +.+|+|.||+++|++++|+|||+|||
T Consensus 210 ~~~~v~~i~~~~v~~~~---g~~--i~~D~vi~a~G~~p~~----~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~ 280 (364)
T TIGR03169 210 EGAPVTRGPDGALILAD---GRT--LPADAILWATGARAPP----WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280 (364)
T ss_pred eCCeeEEEcCCeEEeCC---CCE--EecCEEEEccCCChhh----HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeee
Confidence 99999999887666643 664 9999999999976654 3334454 66799999999998899999999999
Q ss_pred cccccchhhhHHHHHhhhcccCCCCCchhHHHHHHHHhhhcccchhHHHhhhcccCchhhhhhhhhccccccccccCHHH
Q 007975 375 ATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQVELYLKNKKMGDFGDLLKEAKGDVAQDAVELNIEE 454 (583)
Q Consensus 375 a~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (583)
+..+.
T Consensus 281 ~~~~~--------------------------------------------------------------------------- 285 (364)
T TIGR03169 281 AVITD--------------------------------------------------------------------------- 285 (364)
T ss_pred eecCC---------------------------------------------------------------------------
Confidence 97531
Q ss_pred HHHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhhhhhccCCCCCccccCCCCCCCCCCeee-cCcceEEccCCCeeee
Q 007975 455 FKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEAEKNPEGPLRFRGTGRHRFQPFRYQ-HLGQFAPLGGEQTAAQ 533 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~p~taq~A~~qg~~~a~~i~~~~~~~~~~~~~~~~~g~~~~~~~pf~~~-~~G~~~~lG~~~av~~ 533 (583)
.+.|++++.|++||+++|+||.+.+.| .+++||++. ..|+++++|.+.||++
T Consensus 286 ------------~~~~~~~~~A~~~g~~~a~ni~~~l~g---------------~~~~~~~~~~~~~~~~~~G~~~~v~~ 338 (364)
T TIGR03169 286 ------------APRPKAGVYAVRQAPILAANLRASLRG---------------QPLRPFRPQRDYLQLLNTGDRRAVAS 338 (364)
T ss_pred ------------CCCCCchHHHHHhHHHHHHHHHHHhcC---------------CCCCCCcccccceeEEEcCCCcEEEe
Confidence 356889999999999999999887654 356788864 6799999999999998
Q ss_pred cCCcccchhHHHHHHHHHHHHHhcc
Q 007975 534 LPWDWVSIGRSSQWLWYSVYTSKLV 558 (583)
Q Consensus 534 ~~~~~~~~G~~a~~~w~~~~~~~~~ 558 (583)
.+ .+.+.|+++|+++..+...++.
T Consensus 339 ~~-~~~~~~~~~~~~k~~~~~~~~~ 362 (364)
T TIGR03169 339 WG-WIIGPGRWLWRLKDWIDRRFMR 362 (364)
T ss_pred ec-ceeecCccHHHHHHHHhHHHHh
Confidence 75 3677899999999887766543
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.4e-39 Score=349.45 Aligned_cols=274 Identities=20% Similarity=0.336 Sum_probs=220.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCCCCC-chhhhccccCCCcc-c-chhHHHHHHhCCCcEEEEEe
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTP-LLPSVTCGTVEARS-I-VEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~~~p-~l~~~~~g~~~~~~-i-~~~~~~~~~~~~i~v~~~~~ 132 (583)
|++|||||||+||++||..|++ .+++|+|||+++++.|.+ .++.+..+.....+ . ......+.++.++++. +++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-~~~ 79 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVK-TYH 79 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEE-eCC
Confidence 4589999999999999999974 478999999999988875 67777666544332 2 2223455566775553 478
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASL 212 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 212 (583)
+|+.||++++.|.+.++. +++..++.||+||||||++|+.+++++ ++.+.+++++++..+++.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------- 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRK-----TNEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------- 145 (438)
T ss_pred EEEEEECCCCEEEEEECC-----CCcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-------
Confidence 999999999999988653 112346899999999999998776653 566778889998888776532
Q ss_pred CCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCC
Q 007975 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~G 292 (583)
..+++++|||||++|+|+|..+.++ +.+|+|+++.+++++.+++++.+.+.+.|+++|
T Consensus 146 --------~~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~g 203 (438)
T PRK13512 146 --------NQVDKALVVGAGYISLEVLENLYER--------------GLHPTLIHRSDKINKLMDADMNQPILDELDKRE 203 (438)
T ss_pred --------cCCCEEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecccccchhcCHHHHHHHHHHHHhcC
Confidence 1245999999999999999999875 579999999999999999999999999999999
Q ss_pred CEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCCCCEEE
Q 007975 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYA 370 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyA 370 (583)
|+++++++|++++++.+++.+ |+. +++|.|+||+|.+++ + ++++..++ +++|+|.||+++|+ ++|+|||
T Consensus 204 I~i~~~~~v~~i~~~~v~~~~---g~~--~~~D~vl~a~G~~pn--~-~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA 274 (438)
T PRK13512 204 IPYRLNEEIDAINGNEVTFKS---GKV--EHYDMIIEGVGTHPN--S-KFIESSNIKLDDKGFIPVNDKFET-NVPNIYA 274 (438)
T ss_pred CEEEECCeEEEEeCCEEEECC---CCE--EEeCEEEECcCCCcC--h-HHHHhcCcccCCCCcEEECCCccc-CCCCEEE
Confidence 999999999999887766643 654 899999999996554 4 35666766 56789999999998 8999999
Q ss_pred cCccccc
Q 007975 371 LGDCATV 377 (583)
Q Consensus 371 iGD~a~~ 377 (583)
+|||+..
T Consensus 275 ~GD~~~~ 281 (438)
T PRK13512 275 IGDIITS 281 (438)
T ss_pred eeeeEEe
Confidence 9999864
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=337.40 Aligned_cols=271 Identities=22% Similarity=0.358 Sum_probs=212.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCC--eEEEEcCCCCCCCC-C-chhhhccccCCCcccchhHHHHHHhCCCcEEEE-E
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSY--DVQVISPRNYFAFT-P-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFW-E 131 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~--~Vtlie~~~~~~~~-p-~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~-~ 131 (583)
.+++|||||||+||++||..|++.++ +||||++++++.|. | +...+..+.........+ .+++...++ +++ .
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~i--~~~~g 78 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP-ANWWQENNV--HLHSG 78 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCC-HHHHHHCCC--EEEcC
Confidence 45789999999999999999997665 79999999888773 3 334444443221111222 344556664 444 4
Q ss_pred eEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCc-cccCcccCCHHHHHHHHHHHHHHHHHc
Q 007975 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGV-EENCNFLKEVEDAQRIRRNVIESFEKA 210 (583)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~-~~~~~~~~~~~~a~~l~~~l~~~~~~~ 210 (583)
..|..+|++++.|.+.++. .+.||+||||||+.|+.+++++. .++.+.+++.+++.++++.+.
T Consensus 79 ~~V~~id~~~~~v~~~~g~----------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~------ 142 (396)
T PRK09754 79 VTIKTLGRDTRELVLTNGE----------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ------ 142 (396)
T ss_pred CEEEEEECCCCEEEECCCC----------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh------
Confidence 4799999999999886543 79999999999999988777664 356788889999988876542
Q ss_pred CCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHH
Q 007975 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFS 289 (583)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~ 289 (583)
.+++++|||+|++|+|+|..|... +.+|+++++.+++++. +++.+.+.+.+.++
T Consensus 143 -----------~~~~vvViGgG~ig~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 197 (396)
T PRK09754 143 -----------PERSVVIVGAGTIGLELAASATQR--------------RCKVTVIELAATVMGRNAPPPVQRYLLQRHQ 197 (396)
T ss_pred -----------cCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCcchhhhcCHHHHHHHHHHHH
Confidence 346999999999999999999875 5799999999999875 68888999999999
Q ss_pred hCCCEEEeCCeEEEEeCC-eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCE
Q 007975 290 RDGIDVKLGSMVVKVTDK-EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSI 368 (583)
Q Consensus 290 ~~GV~v~~~~~V~~v~~~-~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~V 368 (583)
+.||+++++++|++++.+ .+.+. +.+|++ +++|.||+++|..++ . .+++.+++..+++|.||+++|| +.|+|
T Consensus 198 ~~GV~i~~~~~V~~i~~~~~~~v~-l~~g~~--i~aD~Vv~a~G~~pn--~-~l~~~~gl~~~~gi~vd~~~~t-s~~~I 270 (396)
T PRK09754 198 QAGVRILLNNAIEHVVDGEKVELT-LQSGET--LQADVVIYGIGISAN--D-QLAREANLDTANGIVIDEACRT-CDPAI 270 (396)
T ss_pred HCCCEEEeCCeeEEEEcCCEEEEE-ECCCCE--EECCEEEECCCCChh--h-HHHHhcCCCcCCCEEECCCCcc-CCCCE
Confidence 999999999999999753 44443 345764 999999999996544 4 4666778755567999999998 89999
Q ss_pred EEcCcccccc
Q 007975 369 YALGDCATVN 378 (583)
Q Consensus 369 yAiGD~a~~~ 378 (583)
||+|||+..+
T Consensus 271 yA~GD~a~~~ 280 (396)
T PRK09754 271 FAGGDVAITR 280 (396)
T ss_pred EEccceEeee
Confidence 9999999753
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=4.3e-38 Score=339.54 Aligned_cols=278 Identities=26% Similarity=0.430 Sum_probs=217.0
Q ss_pred CeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCCCCCCC-chhhhccccCC-CcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNYFAFTP-LLPSVTCGTVE-ARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~~~~~p-~l~~~~~g~~~-~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
++|||||||+||+++|..|++. +++|||||+++++.|.+ .++.+..+... +.++.....+.+.+.++++ +.+++|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDV-KTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeE-EecCEE
Confidence 3799999999999999999854 46999999999988865 35544444322 2334444556677777554 247899
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 213 (583)
+.||++++.|.+.+.. +++..++.||+||||||++|+.+++||.+ ++.+.+++.+++.++++.+.+
T Consensus 80 ~~id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-------- 146 (444)
T PRK09564 80 VKVDAKNKTITVKNLK-----TGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD-------- 146 (444)
T ss_pred EEEECCCCEEEEEECC-----CCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------
Confidence 9999999999887521 11112344999999999999999999986 567778888888888776532
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC-cccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~-~~~~~~~~~~~~~L~~~G 292 (583)
..+++++|||||++|+|+|..+.+. +.+|+++++.+++++ .+++++.+.+.+.|++.|
T Consensus 147 -------~~~~~vvVvGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~g 205 (444)
T PRK09564 147 -------EEIKNIVIIGAGFIGLEAVEAAKHL--------------GKNVRIIQLEDRILPDSFDKEITDVMEEELRENG 205 (444)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHhc--------------CCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCC
Confidence 1345999999999999999988764 578999999999887 589999999999999999
Q ss_pred CEEEeCCeEEEEeCCe-EEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCCCCEE
Q 007975 293 IDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIY 369 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~Vy 369 (583)
|+++++++|+++++++ +...... +.+ +++|.+|||+|..++ . .+++..++ +.+|+|.||+++|| ++||||
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~~-~~~--i~~d~vi~a~G~~p~--~-~~l~~~gl~~~~~g~i~vd~~~~t-~~~~Iy 278 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVTD-KGE--YEADVVIVATGVKPN--T-EFLEDTGLKTLKNGAIIVDEYGET-SIENIY 278 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEeC-CCE--EEcCEEEECcCCCcC--H-HHHHhcCccccCCCCEEECCCccc-CCCCEE
Confidence 9999999999997543 3222222 333 999999999996544 3 45667776 56789999999998 899999
Q ss_pred EcCcccccc
Q 007975 370 ALGDCATVN 378 (583)
Q Consensus 370 AiGD~a~~~ 378 (583)
|+|||+..+
T Consensus 279 A~GD~~~~~ 287 (444)
T PRK09564 279 AAGDCATIY 287 (444)
T ss_pred EeeeEEEEE
Confidence 999999763
No 8
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-37 Score=327.37 Aligned_cols=269 Identities=23% Similarity=0.392 Sum_probs=216.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCCC-CCchhhhccccCCCcccch-hHHHHHHhCCCcEEEEEeE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF-TPLLPSVTCGTVEARSIVE-PVRNIVRKKNVDICFWEAE 133 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~~-~p~l~~~~~g~~~~~~i~~-~~~~~~~~~~i~v~~~~~~ 133 (583)
+++|||||||+||+++|+.|++ ++.+||||++++++.| .|.++.+..+...++++.. ...+++++.++++. .+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~ 80 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLF-PHTW 80 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEE-CCCE
Confidence 4699999999999999999974 5678999999987665 6777777777666666554 46677778885542 3678
Q ss_pred EEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCC
Q 007975 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (583)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 213 (583)
|+.+|++++.|.+. + ..+.||+||||||+.|..+++||.+. .+.++++.++..++..+
T Consensus 81 V~~id~~~~~v~~~-~----------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~---------- 138 (377)
T PRK04965 81 VTDIDAEAQVVKSQ-G----------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL---------- 138 (377)
T ss_pred EEEEECCCCEEEEC-C----------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh----------
Confidence 99999998888753 2 17999999999999999999999754 67778888877666543
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~~G 292 (583)
...++++|||||++|+|+|..|.+. +.+|+++++.+++++. +++.+.+.+++.|++.|
T Consensus 139 -------~~~~~vvViGgG~~g~e~A~~L~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 139 -------RDAQRVLVVGGGLIGTELAMDLCRA--------------GKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred -------hcCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 2345999999999999999999864 5799999999999876 58889999999999999
Q ss_pred CEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCEEE
Q 007975 293 IDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYA 370 (583)
Q Consensus 293 V~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VyA 370 (583)
|+++++++|++++.+ .+.+.. .+|++ +++|.||+|+|..++. .+.+..++..++.|.||+++|| +.|||||
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vI~a~G~~p~~---~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA 270 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRATL-DSGRS--IEVDAVIAAAGLRPNT---ALARRAGLAVNRGIVVDSYLQT-SAPDIYA 270 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEEE-cCCcE--EECCEEEECcCCCcch---HHHHHCCCCcCCCEEECCCccc-CCCCEEE
Confidence 999999999999753 333332 44664 9999999999976554 4566677733334999999998 8999999
Q ss_pred cCccccc
Q 007975 371 LGDCATV 377 (583)
Q Consensus 371 iGD~a~~ 377 (583)
+|||+..
T Consensus 271 ~GD~a~~ 277 (377)
T PRK04965 271 LGDCAEI 277 (377)
T ss_pred eeecEeE
Confidence 9999975
No 9
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=7.6e-37 Score=347.46 Aligned_cols=271 Identities=22% Similarity=0.375 Sum_probs=221.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCC-chhhhccccCCCcccchhHHHHHHhCCCcEEEEEe
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~----~g~~Vtlie~~~~~~~~p-~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~ 132 (583)
+++|||||+|+||+++|..|++ .+++||||++++++.|.+ .++.+..+. ..+++.....++++..++++. ...
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~gI~~~-~g~ 80 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGIKVL-VGE 80 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCCCEEE-cCC
Confidence 4699999999999999999853 468999999999988764 466655543 445566666778888885542 345
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccc-cCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
+|+.||++.+.|.+.++. .+.||+||||||+.|..|++||.+. +++.+++++++.++++.+.
T Consensus 81 ~V~~Id~~~~~V~~~~G~----------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~------- 143 (847)
T PRK14989 81 RAITINRQEKVIHSSAGR----------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACAR------- 143 (847)
T ss_pred EEEEEeCCCcEEEECCCc----------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh-------
Confidence 799999999888876543 7999999999999999999999864 4677889999988876532
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC-cccHHHHHHHHHHHHh
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-MFDKRITAFAEEKFSR 290 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~-~~~~~~~~~~~~~L~~ 290 (583)
.+++++|||||++|+|+|..|.++ +.+|+++++.+++++ .+++..++.+.+.|++
T Consensus 144 ----------~~k~vvVIGgG~iGlE~A~~L~~~--------------G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~ 199 (847)
T PRK14989 144 ----------RSKRGAVVGGGLLGLEAAGALKNL--------------GVETHVIEFAPMLMAEQLDQMGGEQLRRKIES 199 (847)
T ss_pred ----------cCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEeccccchhhhcCHHHHHHHHHHHHH
Confidence 345999999999999999999876 579999999999998 5899999999999999
Q ss_pred CCCEEEeCCeEEEEeCC---eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCC
Q 007975 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGS 365 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~ 365 (583)
+||++++++.+++|.++ .+......+|++ +++|.||||+|++|+. .+++..++ +.+|+|.||+++|| +.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~--i~~D~Vv~A~G~rPn~---~L~~~~Gl~~~~~G~I~VD~~l~T-s~ 273 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSE--LEVDFIVFSTGIRPQD---KLATQCGLAVAPRGGIVINDSCQT-SD 273 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCE--EEcCEEEECCCcccCc---hHHhhcCccCCCCCcEEECCCCcC-CC
Confidence 99999999999999642 222222245775 9999999999976654 46667776 67789999999999 89
Q ss_pred CCEEEcCccccc
Q 007975 366 DSIYALGDCATV 377 (583)
Q Consensus 366 ~~VyAiGD~a~~ 377 (583)
|+|||+|||+..
T Consensus 274 p~IYAiGD~a~~ 285 (847)
T PRK14989 274 PDIYAIGECASW 285 (847)
T ss_pred CCEEEeecceeE
Confidence 999999999975
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=3e-36 Score=343.15 Aligned_cols=269 Identities=19% Similarity=0.400 Sum_probs=223.8
Q ss_pred EEEECCcHHHHHHHHhcCC---CCCeEEEEcCCCCCCCC-CchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 61 VVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 61 VVIIGgG~aGl~aA~~L~~---~g~~Vtlie~~~~~~~~-p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
|||||||+||+++|..|++ .+++|||||+++++.|. +.++.+..|..+.+++..+..+++++.++++. ...+|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~-~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLY-TGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEE-cCCeEEE
Confidence 6999999999999988763 56899999999998776 55777888877777788888888888885542 3568999
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 215 (583)
||++++.|.+.++. ++.||+||||||+.|+.+++||.+ ++++.+++++++..+++.+.
T Consensus 80 Id~~~k~V~~~~g~----------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~----------- 138 (785)
T TIGR02374 80 IDTDQKQVITDAGR----------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ----------- 138 (785)
T ss_pred EECCCCEEEECCCc----------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-----------
Confidence 99999999887643 799999999999999999999986 45788889999988876532
Q ss_pred CHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHHhCCCE
Q 007975 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRDGID 294 (583)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~~GV~ 294 (583)
.+++++|||||++|+|+|..|.++ +.+|+++++.+++++. +++...+.+.+.|+++||+
T Consensus 139 ------~~k~vvVVGgG~~GlE~A~~L~~~--------------G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~ 198 (785)
T TIGR02374 139 ------RFKKAAVIGGGLLGLEAAVGLQNL--------------GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLT 198 (785)
T ss_pred ------cCCeEEEECCCHHHHHHHHHHHhc--------------CCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCE
Confidence 346999999999999999999875 5799999999999874 8999999999999999999
Q ss_pred EEeCCeEEEEeCCe-EEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCEEEcCc
Q 007975 295 VKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIYALGD 373 (583)
Q Consensus 295 v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~VyAiGD 373 (583)
+++++.++++.++. +......+|++ +++|+|||++|++|+. .++..+++..+|.|.||+++|| ++|+|||+||
T Consensus 199 v~~~~~v~~i~~~~~~~~v~~~dG~~--i~~D~Vi~a~G~~Pn~---~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~GD 272 (785)
T TIGR02374 199 FLLEKDTVEIVGATKADRIRFKDGSS--LEADLIVMAAGIRPND---ELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVGE 272 (785)
T ss_pred EEeCCceEEEEcCCceEEEEECCCCE--EEcCEEEECCCCCcCc---HHHHhcCCccCCCEEECCCccc-CCCCEEEeee
Confidence 99999999997542 22222245765 9999999999976654 4666777754577999999998 8999999999
Q ss_pred cccc
Q 007975 374 CATV 377 (583)
Q Consensus 374 ~a~~ 377 (583)
|+..
T Consensus 273 ~a~~ 276 (785)
T TIGR02374 273 CAEH 276 (785)
T ss_pred ccee
Confidence 9975
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2e-35 Score=311.92 Aligned_cols=269 Identities=23% Similarity=0.341 Sum_probs=203.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc---------------------c------CC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------T------VE 108 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g---------------------~------~~ 108 (583)
+..+++||||+|+||..+|.+++..|.+|.|||+...++++++...+.+. . .+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 34689999999999999999999999999999999767665432222111 0 11
Q ss_pred Ccc-----------cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 109 ARS-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 109 ~~~-----------i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
..+ +...++.+++..+ ++++.++...+| .++|.+... +.+.+.++++|||||++|..
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~--V~vi~G~a~f~~--~~~v~V~~~--------~~~~~~a~~iiIATGS~p~~ 149 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNG--VDVIRGEARFVD--PHTVEVTGE--------DKETITADNIIIATGSRPRI 149 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCC--CEEEEEEEEECC--CCEEEEcCC--------CceEEEeCEEEEcCCCCCcC
Confidence 111 1122345555566 667899999888 457776542 12489999999999999999
Q ss_pred CCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCC
Q 007975 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (583)
Q Consensus 178 ~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~ 257 (583)
|++||+++..+ + +.+++..+. +-+++++|||||++|+|+|..++++
T Consensus 150 ~~~~~~~~~~~-~-~s~~~l~~~--------------------~lP~~lvIiGgG~IGlE~a~~~~~L------------ 195 (454)
T COG1249 150 PPGPGIDGARI-L-DSSDALFLL--------------------ELPKSLVIVGGGYIGLEFASVFAAL------------ 195 (454)
T ss_pred CCCCCCCCCeE-E-echhhcccc--------------------cCCCEEEEECCCHHHHHHHHHHHHc------------
Confidence 99999864321 1 122211111 1234999999999999999999998
Q ss_pred CCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 258 ~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+++||++++.+++||.+|+++++.+.+.|++.|+++++++.+++++.+ ++.+.. .+|+..++++|.+++|+| +
T Consensus 196 --G~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~-~~g~~~~~~ad~vLvAiG--R 270 (454)
T COG1249 196 --GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTL-EDGEGGTIEADAVLVAIG--R 270 (454)
T ss_pred --CCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEE-ecCCCCEEEeeEEEEccC--C
Confidence 689999999999999999999999999999999999999999999753 244332 234422489999999999 7
Q ss_pred chhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
.|+++.| +++.|+ +.+|+|.||.+++| +.|+|||+|||+.
T Consensus 271 ~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~ 313 (454)
T COG1249 271 KPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIG 313 (454)
T ss_pred ccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCC
Confidence 7777666 788887 77899999955555 8999999999975
No 12
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5.9e-35 Score=314.48 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=195.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcccc--------------------------CCC--
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------------VEA-- 109 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~--------------------------~~~-- 109 (583)
.++|+||||||||++||..+++.|++|+|||+. .++++.+...+.+.. .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 479999999999999999999999999999985 556554322111110 000
Q ss_pred ---------cccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCC
Q 007975 110 ---------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (583)
Q Consensus 110 ---------~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~i 180 (583)
..+...++..+++.+ ++++.+++..+|++ .+.+.... ..+.||+||||||+.|..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~v~~~--~v~v~~~g---------~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAG--VELLEGRARLVGPN--TVEVLQDG---------TTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCC--EEEEecCC---------eEEEcCEEEEecCCcCCCCCC
Confidence 012233455566677 56788999999876 34332211 279999999999999999999
Q ss_pred CCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCC
Q 007975 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (583)
Q Consensus 181 pG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~ 260 (583)
||.+. . .+.+++..+ + ..+++++|||+|++|+|+|..+..+ +
T Consensus 148 ~G~~~-~---~~~~~~~~l-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~--------------G 189 (446)
T TIGR01424 148 PGHEL-G---ITSNEAFHL-------------P-------TLPKSILILGGGYIAVEFAGIWRGL--------------G 189 (446)
T ss_pred CCccc-e---echHHhhcc-------------c-------ccCCeEEEECCcHHHHHHHHHHHHc--------------C
Confidence 98642 1 122222211 1 1245999999999999999998775 5
Q ss_pred ceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCchh
Q 007975 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (583)
Q Consensus 261 ~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 338 (583)
.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|++++. +++.+.. .+|++ +++|.||||+|..+ +
T Consensus 190 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~viva~G~~p--n 264 (446)
T TIGR01424 190 VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTL-SHGEE--IVADVVLFATGRSP--N 264 (446)
T ss_pred CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE-cCCcE--eecCEEEEeeCCCc--C
Confidence 7999999999999999999999999999999999999999999963 4454443 34654 99999999999554 4
Q ss_pred HHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 339 IKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 339 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 265 ~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 304 (446)
T TIGR01424 265 TKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD 304 (446)
T ss_pred CCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC
Confidence 4323 455665 66789999999998 8999999999974
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.7e-35 Score=315.95 Aligned_cols=269 Identities=23% Similarity=0.387 Sum_probs=194.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc--------------------------cCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------------TVEAR 110 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g--------------------------~~~~~ 110 (583)
..++|||||||+||++||..|++.|++|+|||++. ++++++...+.+. ..+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999886 5554322221111 00111
Q ss_pred ccc-----------hhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 111 SIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 111 ~i~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
.+. ..++..+++.+ ++++.++++.+|+....|...++ ...+.||+||||||++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~~~~~~~~~v~~~~~---------~~~~~~d~lViAtGs~p~~-- 148 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNK--VDIIRGEAKLVDPNTVRVMTEDG---------EQTYTAKNIILATGSRPRE-- 148 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCCEEEEecCCC---------cEEEEeCEEEEeCCCCCCC--
Confidence 111 12444556666 66788999988765444432111 1379999999999999864
Q ss_pred CCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCC
Q 007975 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (583)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~ 259 (583)
+||.+.....+.+.+++..+. ...++++|||||++|+|+|..+.++
T Consensus 149 ~pg~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~A~~l~~~-------------- 194 (462)
T PRK06416 149 LPGIEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEFASAYASL-------------- 194 (462)
T ss_pred CCCCCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 466543222333444443221 1235999999999999999998765
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
+.+|+++++.++++|.+++++.+.+.+.|+++||+++++++|++++++ .+.+....+|+..++++|.||||+|.+++
T Consensus 195 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~- 273 (462)
T PRK06416 195 GAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN- 273 (462)
T ss_pred CCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC-
Confidence 579999999999999999999999999999999999999999999753 45554322244346999999999996544
Q ss_pred hHHHH-HHHhCc-CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 338 IIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 338 ~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+ ++..++ ..+|+|.||+++|+ +.|+|||+|||+.
T Consensus 274 -~~~l~l~~~gl~~~~g~i~vd~~~~t-~~~~VyAiGD~~~ 312 (462)
T PRK06416 274 -TENLGLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDIVG 312 (462)
T ss_pred -CCCCCchhcCCeecCCEEeECCCCcc-CCCCEEEeeecCC
Confidence 3223 355665 23889999999997 8999999999974
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.3e-34 Score=314.62 Aligned_cols=267 Identities=21% Similarity=0.299 Sum_probs=199.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcC---------CCCCCCCCchhhhcc--------------------cc
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP---------RNYFAFTPLLPSVTC--------------------GT 106 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~---------~~~~~~~p~l~~~~~--------------------g~ 106 (583)
...+||+|||||+||+.||..++..|.+|+|||+ ...++++++...+.+ |.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 4468999999999999999999999999999996 244565543211110 10
Q ss_pred -------CCCcccc-----------hhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEE
Q 007975 107 -------VEARSIV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLV 168 (583)
Q Consensus 107 -------~~~~~i~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LV 168 (583)
.+...+. ..++.++...+ ++++++++..+|+....|.+.++. ...+.||+||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~i~g~a~~vd~~~v~V~~~~g~--------~~~~~~d~LI 172 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAG--VKLYEGEGKIVGPNEVEVTQLDGT--------KLRYTAKHIL 172 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCCEEEEEeCCCc--------EEEEEcCEEE
Confidence 0101111 11223444456 678999999999876666654332 2368999999
Q ss_pred EccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhH
Q 007975 169 IAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE 248 (583)
Q Consensus 169 iAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~ 248 (583)
||||++|..+++||.+. . .+.+++..+. ...++++|||||++|+|+|..+..+
T Consensus 173 IATGs~p~~p~ipG~~~-~---~~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~--- 225 (499)
T PLN02507 173 IATGSRAQRPNIPGKEL-A---ITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGM--- 225 (499)
T ss_pred EecCCCCCCCCCCCccc-e---echHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHc---
Confidence 99999999999998632 1 2334433221 1235999999999999999998875
Q ss_pred hHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecce
Q 007975 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (583)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (583)
+.+|+|+++.+++++.+++++.+.+.+.|+++||+++++++|++++. +++.+.. .+|++ +++|.
T Consensus 226 -----------G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~-~~g~~--i~~D~ 291 (499)
T PLN02507 226 -----------GATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVIT-DHGEE--FVADV 291 (499)
T ss_pred -----------CCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEE-CCCcE--EEcCE
Confidence 57999999999999999999999999999999999999999999974 4555553 34654 99999
Q ss_pred EEEccCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 327 VVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 327 vI~a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|+|++|.+++ +..+ ++.+++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 292 vl~a~G~~pn--~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~ 341 (499)
T PLN02507 292 VLFATGRAPN--TKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTN 341 (499)
T ss_pred EEEeecCCCC--CCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCC
Confidence 9999996554 3222 456665 67789999999998 9999999999985
No 15
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.2e-34 Score=309.59 Aligned_cols=266 Identities=23% Similarity=0.365 Sum_probs=191.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhc--------------------ccc-------CC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT--------------------CGT-------VE 108 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~--------------------~g~-------~~ 108 (583)
+.++|||||||||||++||..|++.|++|+|||+.. ++++.+...+. .|. .+
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 446899999999999999999999999999999863 44443222111 111 11
Q ss_pred Ccccc-----------hhHHHHHHhC-CCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 109 ARSIV-----------EPVRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 109 ~~~i~-----------~~~~~~~~~~-~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
...+. ..+...+++. + ++++.++...++ .++|.+. + .++.||+||||||++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~v~~g~~~~~~--~~~v~v~-~----------~~~~~d~lViATGs~p~ 146 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEG--VDVFRGHARFES--PNTVRVG-G----------ETLRAKRIFINTGARAA 146 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCC--cEEEEEEEEEcc--CCEEEEC-c----------EEEEeCEEEEcCCCCCC
Confidence 11111 1233444554 5 556667666554 5567663 1 17899999999999999
Q ss_pred CCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCC
Q 007975 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (583)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~ 256 (583)
.+++||.+... +.+..+...+ . ..+++++|||+|++|+|+|..+.++
T Consensus 147 ~p~i~G~~~~~--~~~~~~~~~~-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~----------- 193 (463)
T PRK06370 147 IPPIPGLDEVG--YLTNETIFSL-------------D-------ELPEHLVIIGGGYIGLEFAQMFRRF----------- 193 (463)
T ss_pred CCCCCCCCcCc--eEcchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHc-----------
Confidence 99999975421 1222222110 0 1235999999999999999999875
Q ss_pred CCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 257 ~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|.+++++ .+.+....++...++++|.||||+|.+
T Consensus 194 ---G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 194 ---GSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred ---CCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 579999999999999999999999999999999999999999999753 333221111222259999999999955
Q ss_pred CchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++ +..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 271 pn--~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~ 312 (463)
T PRK06370 271 PN--TDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNG 312 (463)
T ss_pred cC--CCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCC
Confidence 44 4324 455665 67899999999998 8999999999975
No 16
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.4e-34 Score=309.61 Aligned_cols=269 Identities=19% Similarity=0.298 Sum_probs=197.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc--------------------------cCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------------TVEA 109 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g--------------------------~~~~ 109 (583)
+.+++|+|||||+||++||..|++.|++|+|||+++.++++.......+. ..+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 44689999999999999999999999999999998776665422211100 0000
Q ss_pred ccc-----------chhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 110 RSI-----------VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 110 ~~i-----------~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
.++ ...+...+.+.+ ++++.+++..++.....|...++ +...+.||+||||||+.|..|
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~v~~~~g--------~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNR--VDLIQGRARFVDPHTVEVECPDG--------EVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEecCCEEEEEeCCC--------ceEEEEcCEEEEcCCCCCCCC
Confidence 111 112334455566 66788888888765444443222 123799999999999999888
Q ss_pred CCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCC
Q 007975 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (583)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~ 258 (583)
++++.... .+.+.++...+. ..+++++|||+|++|+|+|..++.+
T Consensus 153 ~~~~~~~~--~v~~~~~~~~~~--------------------~~~~~v~IiGgG~~g~E~A~~l~~~------------- 197 (461)
T PRK05249 153 PDVDFDHP--RIYDSDSILSLD--------------------HLPRSLIIYGAGVIGCEYASIFAAL------------- 197 (461)
T ss_pred CCCCCCCC--eEEcHHHhhchh--------------------hcCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 87775321 122222221110 1245999999999999999999876
Q ss_pred CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 259 ~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|++++ ++++.+.. .+|++ +++|.||+|+|.+++
T Consensus 198 -g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 198 -GVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHL-KSGKK--IKADCLLYANGRTGN 273 (461)
T ss_pred -CCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEE-CCCCE--EEeCEEEEeecCCcc
Confidence 5799999999999999999999999999999999999999999997 45555543 34654 999999999996544
Q ss_pred hhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 274 --~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~ 313 (461)
T PRK05249 274 --TDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIG 313 (461)
T ss_pred --ccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 4322 455565 67889999999998 8999999999975
No 17
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-34 Score=311.15 Aligned_cols=269 Identities=17% Similarity=0.275 Sum_probs=193.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc--------------------------cCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------------TVEAR 110 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g--------------------------~~~~~ 110 (583)
.+++|+|||||+||++||..|++.|++|+|||+++.++++++...+.+. ..+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 3589999999999999999999999999999998777765432211111 01111
Q ss_pred ccch-----------hHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC-C
Q 007975 111 SIVE-----------PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT-F 178 (583)
Q Consensus 111 ~i~~-----------~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~-~ 178 (583)
.+.. .+..+++..+ ++++++++..+|. +.|.+.... ++..++.||+||||||++|.. |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g--V~~~~g~a~~~~~--~~v~v~~~~------g~~~~~~~d~lViATGs~p~~~p 152 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRK--VTVVNGLGKFTGG--NTLEVTGED------GKTTVIEFDNAIIAAGSRPIQLP 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEEecCC------CceEEEEcCEEEEeCCCCCCCCC
Confidence 1111 1223345556 6678999888774 455554321 112379999999999999974 4
Q ss_pred CCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCC
Q 007975 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (583)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~ 258 (583)
.+++..++ +.+.+++..+. ..+++++|||||++|+|+|..+.++
T Consensus 153 ~~~~~~~~---v~~~~~~~~~~--------------------~~~~~vvIiGgG~iG~E~A~~l~~~------------- 196 (471)
T PRK06467 153 FIPHDDPR---IWDSTDALELK--------------------EVPKRLLVMGGGIIGLEMGTVYHRL------------- 196 (471)
T ss_pred CCCCCCCc---EEChHHhhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 45553332 22333333221 1235999999999999999999876
Q ss_pred CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEc-CCCeeEEeecceEEEccCCCC
Q 007975 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVR-GNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 259 ~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+|||+++.+++++.+++++++.+++.|+++ |+++++++|++++ ++.+.+... .+|+..++++|.|||++|.++
T Consensus 197 -G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 197 -GSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred -CCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccc
Confidence 57999999999999999999999999999999 9999999999996 345544321 123234599999999999654
Q ss_pred chhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 275 --n~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~ 315 (471)
T PRK06467 275 --NGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG 315 (471)
T ss_pred --cCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC
Confidence 44322 455565 67899999999998 8999999999974
No 18
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.7e-34 Score=311.68 Aligned_cols=272 Identities=23% Similarity=0.345 Sum_probs=194.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------cc------CCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT------VEAR 110 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~------~~~~ 110 (583)
..++|||||||+||++||..|++.|.+|+|||+. .++++++...+.+ |. .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3689999999999999999999999999999986 4555543221111 10 0100
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEeEEEEEecC-----CCEEEEecCCCCCCCCCceEEeecCEEEEccCCC
Q 007975 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR 174 (583)
Q Consensus 111 ~-----------i~~~~~~~~~~~~i~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~ 174 (583)
. +...+..++++.+ +++++++++.+|++ .+.+.+.... + +..++.||+||||||++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~g--v~~~~g~a~~i~~~~~~~~~~~~~v~~~~-----g-~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGK--IDVFHGIGRILGPSIFSPMPGTVSVETET-----G-ENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEeCCCCCcCCceEEEEEeCC-----C-ceEEEEcCEEEEeCCCC
Confidence 1 1112234455556 67889999999887 2244443221 1 12379999999999999
Q ss_pred CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhc
Q 007975 175 ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (583)
Q Consensus 175 ~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~ 254 (583)
|+.+ |+.......+.+.+++..+. ..+++++|||||++|+|+|..++++
T Consensus 154 p~~~--p~~~~~~~~~~~~~~~~~~~--------------------~~~~~vvIIGgG~~G~E~A~~l~~~--------- 202 (472)
T PRK05976 154 PVEL--PGLPFDGEYVISSDEALSLE--------------------TLPKSLVIVGGGVIGLEWASMLADF--------- 202 (472)
T ss_pred CCCC--CCCCCCCceEEcchHhhCcc--------------------ccCCEEEEECCCHHHHHHHHHHHHc---------
Confidence 8654 33321111122333332210 1235999999999999999999875
Q ss_pred CCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe---CCeEEEEEcCCCeeEEeecceEEEcc
Q 007975 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWST 331 (583)
Q Consensus 255 p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~ 331 (583)
+.+|+|+++.+++++.+++.+.+.+.+.|+++||+++++++|++++ ++++.+....+|+..++++|.+|||+
T Consensus 203 -----g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 203 -----GVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred -----CCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 5799999999999999999999999999999999999999999997 45554443345654469999999999
Q ss_pred CCCCchhHHHH-HHHhCc-CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 332 GIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 332 G~~~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|.+++ +..+ ++.+++ ..+|+|.||+++++ +.|+|||+|||+.
T Consensus 278 G~~p~--~~~l~l~~~~~~~~~g~i~Vd~~l~t-s~~~IyAiGD~~~ 321 (472)
T PRK05976 278 GRRPN--TEGIGLENTDIDVEGGFIQIDDFCQT-KERHIYAIGDVIG 321 (472)
T ss_pred CCccC--CCCCCchhcCceecCCEEEECCCccc-CCCCEEEeeecCC
Confidence 96554 4333 344555 35689999999998 7899999999974
No 19
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5e-34 Score=308.59 Aligned_cols=270 Identities=19% Similarity=0.289 Sum_probs=186.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcccc---------------------------CCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT---------------------------VEA 109 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~---------------------------~~~ 109 (583)
++++|+||||||||++||..+++.|.+|+|||++..++++.+...+.+.. .+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 35899999999999999999999999999999866666654222111100 000
Q ss_pred ccc-----------chhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 110 RSI-----------VEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 110 ~~i-----------~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
..+ ...+..+++..+ +.++.+++...+ + +++.+.... ++..++.||+||||||++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~-~-~~v~v~~~~------g~~~~~~~d~lVIATGs~p~-- 149 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNK--VDWIKGWGRLDG-V-GKVVVKAED------GSETQLEAKDIVIATGSEPT-- 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcc-C-CEEEEEcCC------CceEEEEeCEEEEeCCCCCC--
Confidence 000 011233344445 667788764433 3 344443211 11237999999999999984
Q ss_pred CCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCC
Q 007975 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (583)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~ 258 (583)
++||.......+.+.+++.. +. ..+++++|||||++|+|+|..+.++
T Consensus 150 ~ipg~~~~~~~~~~~~~~~~-------------~~-------~~~~~vvIIGgG~ig~E~A~~l~~~------------- 196 (466)
T PRK06115 150 PLPGVTIDNQRIIDSTGALS-------------LP-------EVPKHLVVIGAGVIGLELGSVWRRL------------- 196 (466)
T ss_pred CCCCCCCCCCeEECHHHHhC-------------Cc-------cCCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 46776421111122222211 11 1346999999999999999988875
Q ss_pred CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEE--EEcCCCeeEEeecceEEEccCCC
Q 007975 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFT--KVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 259 ~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~--~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+|+++++.+++++.+++++.+.+++.|++.||+++++++|+++++ +++.+ ....+|+..++++|.|||++|..
T Consensus 197 -G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 197 -GAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred -CCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 57999999999999999999999999999999999999999999974 34443 22223443459999999999954
Q ss_pred CchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|++..+ ++..++ +.+| +.||+++|| +.|+|||+|||+.
T Consensus 276 --pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~ 316 (466)
T PRK06115 276 --PYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS 316 (466)
T ss_pred --cccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC
Confidence 555333 345555 4455 778999998 8999999999975
No 20
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=6.7e-34 Score=306.08 Aligned_cols=260 Identities=21% Similarity=0.283 Sum_probs=190.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc--------------------c-------CCCc
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG--------------------T-------VEAR 110 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g--------------------~-------~~~~ 110 (583)
.++|+|||||+||++||..|++.|.+|+|||+. .++++.+...+.+. . .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 579999999999999999999999999999986 35554432211111 0 1111
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC-
Q 007975 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF- 178 (583)
Q Consensus 111 ~-----------i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~- 178 (583)
. +...+...+++.+ ++++.+++...+ .++|.+. + ..+.||+||||||++|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~-~----------~~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNK--VDVIFGHARFTK--DGTVEVN-G----------RDYTAPHILIATGGKPSFPE 145 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcc--CCEEEEC-C----------EEEEeCEEEEecCCCCCCCC
Confidence 1 1122444556666 556677766544 4566552 1 1799999999999999988
Q ss_pred CCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCC
Q 007975 179 NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVK 258 (583)
Q Consensus 179 ~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~ 258 (583)
++||.+ .. .+.++... +. ..+++++|||||++|+|+|..++.+
T Consensus 146 ~i~g~~-~~---~~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~l~~~------------- 188 (450)
T TIGR01421 146 NIPGAE-LG---TDSDGFFA-------------LE-------ELPKRVVIVGAGYIAVELAGVLHGL------------- 188 (450)
T ss_pred CCCCCc-ee---EcHHHhhC-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc-------------
Confidence 899863 21 12222211 10 1235999999999999999999876
Q ss_pred CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--e-EEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 259 DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--E-IFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 259 ~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~-v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+|+++++.+++++.+++++++.+++.|+++||+++++++|++++++ + +.+.. .+|+ .++++|.|||++|..+
T Consensus 189 -g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-~~g~-~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 189 -GSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-EDGK-SIDDVDELIWAIGRKP 265 (450)
T ss_pred -CCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-CCCc-EEEEcCEEEEeeCCCc
Confidence 579999999999999999999999999999999999999999999742 2 33332 3453 2499999999999655
Q ss_pred chhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 266 n--~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~ 306 (450)
T TIGR01421 266 N--TKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVG 306 (450)
T ss_pred C--cccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCC
Confidence 4 4322 455665 67899999999998 8999999999985
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=8.4e-34 Score=305.48 Aligned_cols=268 Identities=22% Similarity=0.346 Sum_probs=194.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCchhhhccc---------cCCCc-------ccchhHH--
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCG---------TVEAR-------SIVEPVR-- 117 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~-~~~~p~l~~~~~g---------~~~~~-------~i~~~~~-- 117 (583)
+.++|||||||+||++||..|++.|.+|+|||+.+. ++++.....+.+. ..+.. .+...++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999864 4443321111111 00100 1111111
Q ss_pred ---HHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHH
Q 007975 118 ---NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVE 194 (583)
Q Consensus 118 ---~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~ 194 (583)
.+.+..+ ++++.+++..+|.....|...++ ..++.||+||||||++|..+++||+++... +.+.+
T Consensus 82 ~~~~~~~~~g--v~~~~g~~~~i~~~~~~v~~~~g---------~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~ 149 (441)
T PRK08010 82 NFHNLADMPN--IDVIDGQAEFINNHSLRVHRPEG---------NLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDST 149 (441)
T ss_pred HHHHHhhcCC--cEEEEEEEEEecCCEEEEEeCCC---------eEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChh
Confidence 1222224 67889999999875444443322 136999999999999999999999854221 22222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC
Q 007975 195 DAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN 274 (583)
Q Consensus 195 ~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~ 274 (583)
+... +. ...++++|||||++|+|+|..+.++ +.+|+++++.++++|
T Consensus 150 ~~~~-------------~~-------~~~~~v~ViGgG~~g~E~A~~l~~~--------------g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 GLLN-------------LK-------ELPGHLGILGGGYIGVEFASMFANF--------------GSKVTILEAASLFLP 195 (441)
T ss_pred Hhhc-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCC
Confidence 2111 00 1235999999999999999999876 579999999999999
Q ss_pred cccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHH-HHHhCc--C
Q 007975 275 MFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--T 349 (583)
Q Consensus 275 ~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~~--~ 349 (583)
.+++++.+.+.+.|+++||+++++++|++++. +.+.+.. .+++ +++|.|++|+|.+++. ..+ ++.+++ +
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~-~~g~---i~~D~vl~a~G~~pn~--~~l~~~~~gl~~~ 269 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS-EHAQ---LAVDALLIASGRQPAT--ASLHPENAGIAVN 269 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-cCCe---EEeCEEEEeecCCcCC--CCcCchhcCcEEC
Confidence 99999999999999999999999999999974 3455543 2343 8999999999965543 222 445565 5
Q ss_pred CCcceEeCCCCccCCCCCEEEcCccccc
Q 007975 350 NRRALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 350 ~~g~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
.+|+|.||+++|| +.|+|||+|||+..
T Consensus 270 ~~G~i~vd~~~~T-s~~~IyA~GD~~~~ 296 (441)
T PRK08010 270 ERGAIVVDKYLHT-TADNIWAMGDVTGG 296 (441)
T ss_pred CCCcEEECCCccc-CCCCEEEeeecCCC
Confidence 6799999999999 89999999999863
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=6.9e-34 Score=308.06 Aligned_cols=265 Identities=22% Similarity=0.316 Sum_probs=194.0
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc-------------------c------cCCCc---
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC-------------------G------TVEAR--- 110 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~-------------------g------~~~~~--- 110 (583)
++||||||||||++||..|++.|.+|+|||+.. ++++++...+.+ | ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 566543211111 0 00100
Q ss_pred ----ccch-----hHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 007975 111 ----SIVE-----PVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (583)
Q Consensus 111 ----~i~~-----~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ip 181 (583)
++.. .+..++++.+ ++++.+++..+| .++|.+.++ ...+.||+||||||+.|..|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~~g---------~~~~~~~~lIiATGs~p~~p~i~ 146 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYG--VDYLRGRARFKD--PKTVKVDLG---------REVRGAKRFLIATGARPAIPPIP 146 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCC--cEEEEEEEEEcc--CCEEEEcCC---------eEEEEeCEEEEcCCCCCCCCCCC
Confidence 1111 1334566666 667888888765 457776432 12689999999999999999999
Q ss_pred CccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCc
Q 007975 182 GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSV 261 (583)
Q Consensus 182 G~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~ 261 (583)
|.++.. +.+.+++..+. ...++++|||+|++|+|+|..+..+ +.
T Consensus 147 G~~~~~--~~~~~~~~~~~--------------------~~~~~vvIIGgG~~g~E~A~~l~~~--------------g~ 190 (463)
T TIGR02053 147 GLKEAG--YLTSEEALALD--------------------RIPESLAVIGGGAIGVELAQAFARL--------------GS 190 (463)
T ss_pred CcccCc--eECchhhhCcc--------------------cCCCeEEEECCCHHHHHHHHHHHHc--------------CC
Confidence 975431 22333221110 1235999999999999999999875 57
Q ss_pred eEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCchhH
Q 007975 262 KITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (583)
Q Consensus 262 ~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~ 339 (583)
+|+++++.+++++.+++++...+++.|++.||+++++++|++++.+ .+.+....++...++++|.||+|+|.++ ++
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p--~~ 268 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRP--NT 268 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCc--CC
Confidence 9999999999999999999999999999999999999999999743 3333221112223599999999999554 44
Q ss_pred HHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 340 KDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 340 ~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~ 307 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTG 307 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCC
Confidence 334 455565 67899999999998 8999999999975
No 23
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=9.1e-34 Score=305.99 Aligned_cols=259 Identities=21% Similarity=0.292 Sum_probs=192.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhc---------------------ccc------CCCc
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT---------------------CGT------VEAR 110 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~---------------------~g~------~~~~ 110 (583)
.++|+||||||||++||..|++.|++|+|||+. .++++++...+. .|. .+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 455443211100 010 0111
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 111 ~-----------i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
. +...++..+.+.+ ++++.++++.+|. ++|.+ ++ ..+.||+||||||+.|+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~v~~--~~v~~-~g----------~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNG--VDLIEGFARFVDA--HTVEV-NG----------ERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEE-CC----------EEEEeCEEEEecCCCCCCCC
Confidence 1 1122334455566 6678889988874 46766 22 17999999999999999999
Q ss_pred CCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCC
Q 007975 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (583)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~ 259 (583)
+||.+ +.+ +.++... +. ..+++++|||||++|+|+|..+.++
T Consensus 148 i~g~~-~~~---~~~~~~~-------------~~-------~~~~~vvViGgG~~g~E~A~~l~~~-------------- 189 (450)
T PRK06116 148 IPGAE-YGI---TSDGFFA-------------LE-------ELPKRVAVVGAGYIAVEFAGVLNGL-------------- 189 (450)
T ss_pred CCCcc-eeE---chhHhhC-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 99863 221 1121111 00 1235999999999999999998875
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--Ce-EEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+.+|+++++.+.+++.+++++.+.+.+.|+++||+++++++|++++. ++ +.+.. .+|++ +++|.||+|+|.+
T Consensus 190 g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~-~~g~~--i~~D~Vv~a~G~~-- 264 (450)
T PRK06116 190 GSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTL-EDGET--LTVDCLIWAIGRE-- 264 (450)
T ss_pred CCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEE-cCCcE--EEeCEEEEeeCCC--
Confidence 57999999999999999999999999999999999999999999964 33 54443 34654 9999999999954
Q ss_pred hhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 265 p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (450)
T PRK06116 265 PNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG 306 (450)
T ss_pred cCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCC
Confidence 444333 455565 67899999999998 8999999999974
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.1e-33 Score=301.94 Aligned_cols=267 Identities=21% Similarity=0.331 Sum_probs=195.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhc---------------------ccc------CC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT---------------------CGT------VE 108 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~---------------------~g~------~~ 108 (583)
...++|+|||||+||++||..|++.|.+|+|||++. +++++....+. .|. .+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 456899999999999999999999999999999863 44433221110 011 00
Q ss_pred Ccccchh------------HHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 109 ARSIVEP------------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 109 ~~~i~~~------------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
...+... ++..++.. ..++++.++++.+|++...|.+.++. ..++.||+||||||++|+
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~g~v~~id~~~~~V~~~~g~--------~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILREN-AAITVLNGEARFVDERTLTVTLNDGG--------EQTVHFDRAFIGTGARPA 153 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcC-CCeEEEEEEEEEecCCEEEEEecCCC--------eEEEECCEEEEeCCCCCC
Confidence 1111111 11223322 14788999999999888778775432 237999999999999999
Q ss_pred CCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCC
Q 007975 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (583)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~ 256 (583)
.|++||+++.. +.+.+++..+. ..+++++|||+|++|+|+|..+.++
T Consensus 154 ~p~i~G~~~~~--~~~~~~~~~l~--------------------~~~~~vvViG~G~~G~E~A~~l~~~----------- 200 (468)
T PRK14694 154 EPPVPGLAETP--YLTSTSALELD--------------------HIPERLLVIGASVVALELAQAFARL----------- 200 (468)
T ss_pred CCCCCCCCCCc--eEcchhhhchh--------------------cCCCeEEEECCCHHHHHHHHHHHHc-----------
Confidence 99999986432 22223332211 1235999999999999999999876
Q ss_pred CCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 257 ~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+|+++++ +++++.+++++.+.+++.|+++||++++++.|++++.+ .+.+.. .++ + +++|.||||+|..
T Consensus 201 ---g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~-~~~-~--i~~D~vi~a~G~~ 272 (468)
T PRK14694 201 ---GSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILET-NAG-T--LRAEQLLVATGRT 272 (468)
T ss_pred ---CCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-CCC-E--EEeCEEEEccCCC
Confidence 579999986 57888899999999999999999999999999999743 344433 233 3 9999999999965
Q ss_pred CchhHHHH-HHHhCc-CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++.. .+ ++.+++ ..+|+|.||+++|| +.|+|||+|||+.
T Consensus 273 pn~~--~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 313 (468)
T PRK14694 273 PNTE--NLNLESIGVETERGAIRIDEHLQT-TVSGIYAAGDCTD 313 (468)
T ss_pred CCcC--CCCchhcCcccCCCeEeeCCCccc-CCCCEEEEeecCC
Confidence 5542 22 345666 45789999999998 8999999999985
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.9e-33 Score=303.69 Aligned_cols=273 Identities=23% Similarity=0.318 Sum_probs=195.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC-CCeEEEEcCC--------CCCCCCCchhhhcc--------------------cc-
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPR--------NYFAFTPLLPSVTC--------------------GT- 106 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~-g~~Vtlie~~--------~~~~~~p~l~~~~~--------------------g~- 106 (583)
+.++|+|||||+||..||..+++. |.+|+|||+. ..++++++...+.+ |.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999986 8999999974 34565443221111 10
Q ss_pred -------CCCcc-----------cchhHHHHHHhC-CCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEE
Q 007975 107 -------VEARS-----------IVEPVRNIVRKK-NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYL 167 (583)
Q Consensus 107 -------~~~~~-----------i~~~~~~~~~~~-~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~L 167 (583)
.+... +...+..+++.. + +++++++...++. ++|.+....+. ++.+.+.+.||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~g--v~~i~G~a~f~~~--~~v~V~~~~~~--~~~~~~~~~~d~l 155 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEG--LTFFLGWGALEDK--NVVLVRESADP--KSAVKERLQAEHI 155 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCC--eEEEEEEEEEccC--CEEEEeeccCC--CCCcceEEECCEE
Confidence 00000 111122334442 4 7789999887764 56666532100 0111247999999
Q ss_pred EEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhh
Q 007975 168 VIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (583)
Q Consensus 168 ViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~ 247 (583)
|||||+.|..|++||.+. . .+.+++..+ . ..+++++|||||++|+|+|..+..+..
T Consensus 156 IIATGs~p~~p~i~G~~~-~---~~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~~~~l~~ 211 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIEH-C---ISSNEAFYL-------------D-------EPPRRVLTVGGGFISVEFAGIFNAYKP 211 (486)
T ss_pred EEecCCCCCCCCCCChhh-e---echhhhhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHhcc
Confidence 999999999999999642 2 233332211 0 124599999999999999998876521
Q ss_pred HhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--Ce-EEEEEcCCCeeEEeec
Q 007975 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPY 324 (583)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~ 324 (583)
.+.+|+|+++.+++++.+++++.+.+.+.|+++||++++++.|++++. ++ +.+.. .+|++ +++
T Consensus 212 -----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-~~g~~--i~~ 277 (486)
T TIGR01423 212 -----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-ESGKT--LDV 277 (486)
T ss_pred -----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-cCCCE--EEc
Confidence 268999999999999999999999999999999999999999999973 22 33332 33654 999
Q ss_pred ceEEEccCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 325 GMVVWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 325 D~vI~a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|.||||+|..|+ +..+ ++.+++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 278 D~vl~a~G~~Pn--~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~ 329 (486)
T TIGR01423 278 DVVMMAIGRVPR--TQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD 329 (486)
T ss_pred CEEEEeeCCCcC--cccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC
Confidence 999999996544 4333 455665 67899999999998 8999999999974
No 26
>PLN02546 glutathione reductase
Probab=100.00 E-value=2e-33 Score=306.86 Aligned_cols=260 Identities=22% Similarity=0.346 Sum_probs=193.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC---------CCCCCCCchhhhcc--------------------cc--
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR---------NYFAFTPLLPSVTC--------------------GT-- 106 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~---------~~~~~~p~l~~~~~--------------------g~-- 106 (583)
.+||+|||||+||+.||..+++.|.+|+|||+. ..++++++...+.+ |.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 479999999999999999999999999999962 33444432221110 10
Q ss_pred -----CCC-----------cccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEc
Q 007975 107 -----VEA-----------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (583)
Q Consensus 107 -----~~~-----------~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViA 170 (583)
.+. +.+...+...+++.+ ++++.++++.+|+. .|.+. +. .+.||+||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~g--V~~i~G~a~~vd~~--~V~v~-G~----------~~~~D~LVIA 223 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAG--VTLIEGRGKIVDPH--TVDVD-GK----------LYTARNILIA 223 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEeEEEEccCC--EEEEC-CE----------EEECCEEEEe
Confidence 000 012233445566666 67889999999875 56552 21 7999999999
Q ss_pred cCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhH
Q 007975 171 MGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDL 250 (583)
Q Consensus 171 tG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~ 250 (583)
||++|..|++||.+ +. .+.+++..+ + ..+++|+|||||++|+|+|..+..+
T Consensus 224 TGs~p~~P~IpG~~-~v---~~~~~~l~~-------------~-------~~~k~V~VIGgG~iGvE~A~~L~~~----- 274 (558)
T PLN02546 224 VGGRPFIPDIPGIE-HA---IDSDAALDL-------------P-------SKPEKIAIVGGGYIALEFAGIFNGL----- 274 (558)
T ss_pred CCCCCCCCCCCChh-hc---cCHHHHHhc-------------c-------ccCCeEEEECCCHHHHHHHHHHHhc-----
Confidence 99999999999974 22 122222111 0 1345999999999999999999875
Q ss_pred hhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC---CeEEEEEcCCCeeEEeecceE
Q 007975 251 FKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVRGNGETSSMPYGMV 327 (583)
Q Consensus 251 ~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~v 327 (583)
+.+|+++++.+++++.+++++++.+++.|+++||++++++++.+++. +.+.+.. .+++ .+.+|.|
T Consensus 275 ---------g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~-~~g~--~~~~D~V 342 (558)
T PLN02546 275 ---------KSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKT-NKGT--VEGFSHV 342 (558)
T ss_pred ---------CCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEE-CCeE--EEecCEE
Confidence 47999999999999999999999999999999999999999999963 3344443 3343 2558999
Q ss_pred EEccCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 328 VWSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 328 I~a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
||++|.+++ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 343 iva~G~~Pn--t~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~ 391 (558)
T PLN02546 343 MFATGRKPN--TKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTD 391 (558)
T ss_pred EEeeccccC--CCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCC
Confidence 999996554 4333 566676 56789999999998 8999999999985
No 27
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-33 Score=300.86 Aligned_cols=268 Identities=21% Similarity=0.367 Sum_probs=195.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCchhhhccccC---------CCcccch-----------h
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSVTCGTV---------EARSIVE-----------P 115 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~-~~~~p~l~~~~~g~~---------~~~~i~~-----------~ 115 (583)
+.++||||||||||++||..|++.|++|+|||+++. ++++++...+.+... +..++.. .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999874 354433222211111 1111111 1
Q ss_pred HHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHH
Q 007975 116 VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVED 195 (583)
Q Consensus 116 ~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~ 195 (583)
..+.+.+.+ ++++.+++..++ +++|.+..+. +..++.||+||||||++|+.+++||..+... +.+..+
T Consensus 82 ~~~~~~~~g--V~~~~g~~~~~~--~~~v~v~~~~-------~~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~ 149 (438)
T PRK07251 82 NYAMLAGSG--VDLYDAEAHFVS--NKVIEVQAGD-------EKIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTG 149 (438)
T ss_pred HHHHHHhCC--CEEEEEEEEEcc--CCEEEEeeCC-------CcEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHH
Confidence 223455566 667788877664 5677765422 1237999999999999999999999754321 122222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc
Q 007975 196 AQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM 275 (583)
Q Consensus 196 a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~ 275 (583)
+..+ . ..+++++|||||++|+|+|..++++ +.+|+++++.+++++.
T Consensus 150 ~~~~-------------~-------~~~~~vvIIGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 150 IQSL-------------E-------TLPERLGIIGGGNIGLEFAGLYNKL--------------GSKVTVLDAASTILPR 195 (438)
T ss_pred Hhcc-------------h-------hcCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCccCCC
Confidence 2211 0 1235999999999999999998765 5799999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHH-HHHhCc--CC
Q 007975 276 FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ--TN 350 (583)
Q Consensus 276 ~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~~--~~ 350 (583)
+++++.+.+.+.|+++||+++++++|++++.+ .+.+.. +|++ +++|.+|+|+|..++ +..+ ++..++ +.
T Consensus 196 ~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~--i~~D~viva~G~~p~--~~~l~l~~~~~~~~~ 269 (438)
T PRK07251 196 EEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET--YRFDALLYATGRKPN--TEPLGLENTDIELTE 269 (438)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE--EEcCEEEEeeCCCCC--cccCCchhcCcEECC
Confidence 99999999999999999999999999999753 454443 3553 999999999996544 4322 333454 56
Q ss_pred CcceEeCCCCccCCCCCEEEcCccccc
Q 007975 351 RRALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 351 ~g~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
+|+|.||+++|+ +.|+|||+|||+..
T Consensus 270 ~g~i~vd~~~~t-~~~~IyaiGD~~~~ 295 (438)
T PRK07251 270 RGAIKVDDYCQT-SVPGVFAVGDVNGG 295 (438)
T ss_pred CCcEEECCCccc-CCCCEEEeeecCCC
Confidence 789999999998 89999999999863
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.9e-33 Score=303.53 Aligned_cols=272 Identities=17% Similarity=0.286 Sum_probs=193.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------cc-----CCCc
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT-----VEAR 110 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~-----~~~~ 110 (583)
...+||+|||||+||++||..+++.|.+|+|||++ .++++++...+.+ |. .+..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 35689999999999999999999999999999986 4555433221111 10 1111
Q ss_pred c-----------cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEec------------CCCCC--------CCCCce
Q 007975 111 S-----------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRS------------SQNTN--------LNGKEE 159 (583)
Q Consensus 111 ~-----------i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~------------~~~~~--------~~~~~~ 159 (583)
. +...+++.+++.+ ++++.++...++.. +|.+.. ..+.. .+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-- 198 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDN--VEYFEGKGSLLSEN--QVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEecCC--EEEeeccccccccccccccccceeeeccceecCCC--
Confidence 1 1122334455565 66788888766633 332100 00000 0011
Q ss_pred EEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHH
Q 007975 160 FCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (583)
Q Consensus 160 ~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A 239 (583)
.++.||+||||||++|..|++||.+ +. .+.++... + ..+++++|||||++|+|+|
T Consensus 199 ~~i~ad~lVIATGS~P~~P~IpG~~-~v---~ts~~~~~-------------l--------~~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 199 QVIEGKNILIAVGNKPIFPDVKGKE-FT---ISSDDFFK-------------I--------KEAKRIGIAGSGYIAVELI 253 (561)
T ss_pred cEEECCEEEEecCCCCCCCCCCCce-eE---EEHHHHhh-------------c--------cCCCEEEEECCcHHHHHHH
Confidence 2799999999999999999999963 22 12222211 0 1145999999999999999
Q ss_pred HHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC---eEEEEEcCC
Q 007975 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGN 316 (583)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~ 316 (583)
..+..+ +.+|+++++.+++++.+++++.+.+.+.|+++||++++++.|.+++++ ++.+....+
T Consensus 254 ~~l~~~--------------G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~ 319 (561)
T PTZ00058 254 NVVNRL--------------GAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG 319 (561)
T ss_pred HHHHHc--------------CCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC
Confidence 999876 579999999999999999999999999999999999999999999753 344432222
Q ss_pred CeeEEeecceEEEccCCCCchhHHHH-HHHhCc-CCCcceEeCCCCccCCCCCEEEcCcccccc
Q 007975 317 GETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (583)
Q Consensus 317 G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~~ 378 (583)
++ ++++|.|++|+|. .|++..+ ++.+++ ..+|+|.||+++|| +.|+|||+|||+...
T Consensus 320 ~~--~i~aD~VlvA~Gr--~Pn~~~L~l~~~~~~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 320 RK--YEHFDYVIYCVGR--SPNTEDLNLKALNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCMVK 378 (561)
T ss_pred CE--EEECCEEEECcCC--CCCccccCccccceecCCCeEEECcCCcc-CCCCEEEeEeccCcc
Confidence 33 4999999999995 4555433 233444 56789999999998 999999999999854
No 29
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.4e-33 Score=284.49 Aligned_cols=263 Identities=19% Similarity=0.271 Sum_probs=187.9
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCch----hhhccc---cCCCcccchhHHHHHHhCCCcEEEEE
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLL----PSVTCG---TVEARSIVEPVRNIVRKKNVDICFWE 131 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l----~~~~~g---~~~~~~i~~~~~~~~~~~~i~v~~~~ 131 (583)
++|+|||||+||+++|..|++.|++|+|||+++ .+..... +.+ ++ .....++...+++.+++.++++ ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~gv~~--~~ 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENY-PGFPEGISGPELMEKMKEQAVKFGAEI--IY 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccccccc-CCCCCCCChHHHHHHHHHHHHHcCCeE--EE
Confidence 489999999999999999999999999999876 2221111 111 11 1223467778888888888554 45
Q ss_pred eEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
++|+.++++++.+.+....+ .++.||+||+|+|+.|+.+++||..+... +........
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~--------~~~~~d~liiAtG~~~~~~~i~g~~~~~~--~~~~~~~~~------------ 134 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDG--------KEYTAKAVIIATGASARKLGIPGEDEFLG--RGVSYCATC------------ 134 (300)
T ss_pred EEEEEEEecCCeeEEEeCCC--------CEEEeCEEEECCCCCcccCCCCChhhcCC--ccEEEeeec------------
Confidence 89999999877554443211 17999999999999999889998643110 000000000
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhC
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRD 291 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~ 291 (583)
.....++++|+|||+|++|+|+|..+.+. +.+|+++++.+.+.. ...+.+.|+++
T Consensus 135 -----~~~~~~~~~v~ViG~G~~~~e~a~~l~~~--------------~~~V~~v~~~~~~~~------~~~~~~~l~~~ 189 (300)
T TIGR01292 135 -----DGPFFKNKEVAVVGGGDSAIEEALYLTRI--------------AKKVTLVHRRDKFRA------EKILLDRLRKN 189 (300)
T ss_pred -----ChhhcCCCEEEEECCChHHHHHHHHHHhh--------------cCEEEEEEeCcccCc------CHHHHHHHHhC
Confidence 00112456999999999999999998875 468999999876532 34456677777
Q ss_pred -CCEEEeCCeEEEEeCCe----EEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHh-CcCCCcceEeCCCCccCCC
Q 007975 292 -GIDVKLGSMVVKVTDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQTNRRALATDEWLRVEGS 365 (583)
Q Consensus 292 -GV~v~~~~~V~~v~~~~----v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~-~~~~~g~i~Vd~~l~~~~~ 365 (583)
||++++++++++++++. +++.+..+|+..++++|++|||+|.+++. .+++.+ .++.+|++.||+++++ ++
T Consensus 190 ~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~---~~l~~~~~~~~~g~i~v~~~~~t-~~ 265 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT---ELLKGLLELDEGGYIVTDEGMRT-SV 265 (300)
T ss_pred CCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCCh---HHHHHhheecCCCcEEECCCCcc-CC
Confidence 99999999999998653 44443334554569999999999976654 333333 3466789999999998 89
Q ss_pred CCEEEcCcccc
Q 007975 366 DSIYALGDCAT 376 (583)
Q Consensus 366 ~~VyAiGD~a~ 376 (583)
|||||+|||+.
T Consensus 266 ~~vya~GD~~~ 276 (300)
T TIGR01292 266 PGVFAAGDVRD 276 (300)
T ss_pred CCEEEeecccC
Confidence 99999999986
No 30
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=9.5e-33 Score=297.04 Aligned_cols=258 Identities=22% Similarity=0.317 Sum_probs=188.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------cc------CCCccc
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT------VEARSI 112 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~------~~~~~i 112 (583)
++|||||||+||.+||..+ .|.+|+|||++ .++++++...+.+ |. .+...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 6999999999999999774 49999999985 3555443221111 11 011111
Q ss_pred c-------hhH-----HHH-HHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 113 V-------EPV-----RNI-VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 113 ~-------~~~-----~~~-~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
. ..+ ... ++..+ ++++.+++..++ .++|.+.++. .+.||+||||||++|+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~--~~~V~v~~g~----------~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPN--IDVYRGHARFIG--PKTLRTGDGE----------EITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCC--cEEEEEEEEEec--CCEEEECCCC----------EEEeCEEEEcCCCCCCCCC
Confidence 1 111 111 34445 667889888874 6688875432 7999999999999999999
Q ss_pred CCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCC
Q 007975 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (583)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~ 259 (583)
+||.+.. .+.+.+++..+.. ..++++|||||++|+|+|..+.++
T Consensus 145 i~g~~~~--~~~~~~~~~~l~~--------------------~~~~vvIIGgG~iG~E~A~~l~~~-------------- 188 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMRLPE--------------------LPESLVIVGGGFIAAEFAHVFSAL-------------- 188 (451)
T ss_pred CCCcCCc--cEEchHHHhhhhh--------------------cCCeEEEECCCHHHHHHHHHHHHc--------------
Confidence 9986432 2345555443211 235999999999999999999875
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
+.+|+++++.+++++.+++++.+.+.+.+ +.||+++++++|+++++ +++.+.. .+|++ +++|.||||+|.+++
T Consensus 189 G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~~pn- 263 (451)
T PRK07846 189 GVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL-DDGST--VEADVLLVATGRVPN- 263 (451)
T ss_pred CCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE-CCCcE--eecCEEEEEECCccC-
Confidence 57999999999999999999988877655 56899999999999974 3455543 34654 999999999996554
Q ss_pred hHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 338 IIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 338 ~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 264 -~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~ 303 (451)
T PRK07846 264 -GDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSS 303 (451)
T ss_pred -ccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCC
Confidence 4323 355665 67899999999997 8999999999985
No 31
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=8.1e-33 Score=299.82 Aligned_cols=266 Identities=22% Similarity=0.363 Sum_probs=192.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhc-------------------cccCCCc-------cc
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT-------------------CGTVEAR-------SI 112 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~-------------------~g~~~~~-------~i 112 (583)
++|+|||||+||++||..|++.|.+|+|||+ +.++++.....+. ...++.. .+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999999 5565543211110 0011100 01
Q ss_pred c-----------hhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 007975 113 V-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (583)
Q Consensus 113 ~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ip 181 (583)
. ..+..+++..+ ++++.+++..++.. .+.+.... +..++.||+||||||++|+.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~~~v~~~~-------g~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNK--VTVIKGEAKFLDPG--TVLVTGEN-------GEETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCC--EEEEecCC-------CcEEEEeCEEEEcCCCCCCCCCCC
Confidence 0 11223344455 66788888888754 44443321 113799999999999999888776
Q ss_pred -CccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCC
Q 007975 182 -GVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (583)
Q Consensus 182 -G~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~ 260 (583)
+... ..+.+.+++..+. ..+++++|||||++|+|+|..+.++ +
T Consensus 150 ~~~~~--~~~~~~~~~~~~~--------------------~~~~~vvViGgG~~g~e~A~~l~~~--------------g 193 (461)
T TIGR01350 150 FDFDG--EVVITSTGALNLK--------------------EVPESLVIIGGGVIGIEFASIFASL--------------G 193 (461)
T ss_pred CCCCC--ceEEcchHHhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHc--------------C
Confidence 3321 1233334332211 1235999999999999999998875 5
Q ss_pred ceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchh
Q 007975 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (583)
Q Consensus 261 ~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 338 (583)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++ ++.+.+.. .+|+..++++|.+|||+|..++
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~i~~D~vi~a~G~~p~-- 270 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGETETLTGEKVLVAVGRKPN-- 270 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCcEEEEEeCEEEEecCCccc--
Confidence 799999999999999999999999999999999999999999886 45566553 3353335999999999996554
Q ss_pred HHH-HHHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 339 IKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 339 ~~~-l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+.. +++.+++ +.+|+|.||+++|+ +.|+|||+|||+.
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~ 310 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIG 310 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 432 3556665 66789999999998 8999999999974
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-33 Score=301.79 Aligned_cols=267 Identities=22% Similarity=0.339 Sum_probs=185.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcccc--------------------CCCcccchh--
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT--------------------VEARSIVEP-- 115 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~--------------------~~~~~i~~~-- 115 (583)
+++|+|||||+||++||.+|++.|.+|+|||++ .++++++...+.+.. +. ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCHH
Confidence 589999999999999999999999999999986 334433221111100 00 000001
Q ss_pred ----------------HHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 116 ----------------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 116 ----------------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+..+++..+ +..+.++...++. +++.+...+ ++..++.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~g~~~~~~~--~~v~v~~~~------g~~~~~~~d~lViATGs~p~~-- 149 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNK--ITEIHGYGTFTDA--NTLEVDLND------GGTETVTFDNAIIATGSSTRL-- 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcCC--CEEEEEecC------CCeeEEEcCEEEEeCCCCCCC--
Confidence 112222233 5566776666654 455554321 112379999999999999875
Q ss_pred CCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCC
Q 007975 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (583)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~ 259 (583)
+||.+... .+.+.++... .. ..+++++|||||++|+|+|..++++
T Consensus 150 ~pg~~~~~-~v~~~~~~~~-------------~~-------~~~~~vvVIGgG~ig~E~A~~l~~~-------------- 194 (466)
T PRK07818 150 LPGTSLSE-NVVTYEEQIL-------------SR-------ELPKSIVIAGAGAIGMEFAYVLKNY-------------- 194 (466)
T ss_pred CCCCCCCC-cEEchHHHhc-------------cc-------cCCCeEEEECCcHHHHHHHHHHHHc--------------
Confidence 36653111 1122222110 00 1235999999999999999999876
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEc-CCCeeEEeecceEEEccCCCCc
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR-GNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~-~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+.+|+++++.++++|.+++++++.+++.|+++||+++++++|++++++ .+.+... .+|+..++++|.||||+|.+|
T Consensus 195 G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p- 273 (466)
T PRK07818 195 GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP- 273 (466)
T ss_pred CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc-
Confidence 579999999999999999999999999999999999999999999753 2333211 246544699999999999554
Q ss_pred hhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 274 -n~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~ 314 (466)
T PRK07818 274 -RVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA 314 (466)
T ss_pred -CCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC
Confidence 44333 455665 57789999999998 8999999999974
No 33
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=298.58 Aligned_cols=268 Identities=18% Similarity=0.238 Sum_probs=191.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------ccC------CC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GTV------EA 109 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~~------~~ 109 (583)
..+++|+|||||+||+++|..|++.|.+|+|||+.+.++++++...+.+ |.. +.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 4568999999999999999999999999999999866665443221100 110 00
Q ss_pred ccc-------chh-----HHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 110 RSI-------VEP-----VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 110 ~~i-------~~~-----~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
..+ ... +...++.. ..++++++++..++...-.|.+.++ +..++.||+||||||+.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~G~a~f~~~~~v~v~~~~g--------~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGN-PALTLLKGYARFKDGNTLVVRLHDG--------GERVLAADRCLIATGSTPTI 164 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhc-CCeEEEEEEEEEecCCEEEEEeCCC--------ceEEEEeCEEEEecCCCCCC
Confidence 001 011 22223322 1377889998888754333433222 12379999999999999999
Q ss_pred CCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCC
Q 007975 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (583)
Q Consensus 178 ~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~ 257 (583)
|++||.++.. +.+..+... . ...+++++|||+|++|+|+|..+..+
T Consensus 165 p~i~G~~~~~--~~~~~~~l~----------~----------~~~~k~vvVIGgG~iG~E~A~~l~~~------------ 210 (479)
T PRK14727 165 PPIPGLMDTP--YWTSTEALF----------S----------DELPASLTVIGSSVVAAEIAQAYARL------------ 210 (479)
T ss_pred CCCCCcCccc--eecchHHhc----------c----------ccCCCeEEEECCCHHHHHHHHHHHHc------------
Confidence 9999975421 111121110 0 01235999999999999999999875
Q ss_pred CCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 258 ~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+|+++++ +++++.+++.+.+.+++.|++.||+++++++|++++ ++.+.+.. .+++ +++|.||||+|..+
T Consensus 211 --G~~Vtlv~~-~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~-~~g~---i~aD~VlvA~G~~p 283 (479)
T PRK14727 211 --GSRVTILAR-STLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTT-GHGE---LRAEKLLISTGRHA 283 (479)
T ss_pred --CCEEEEEEc-CCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEE-cCCe---EEeCEEEEccCCCC
Confidence 579999988 478888999999999999999999999999999986 34555543 3343 89999999999654
Q ss_pred chhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 284 n--~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 324 (479)
T PRK14727 284 N--THDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSD 324 (479)
T ss_pred C--ccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCC
Confidence 4 4323 455565 56789999999998 8999999999985
No 34
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=7.4e-33 Score=299.46 Aligned_cols=267 Identities=23% Similarity=0.332 Sum_probs=193.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------ccC---------C
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GTV---------E 108 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~~---------~ 108 (583)
|++|+|||||++|+.||..+++.|.+|+|||++. ++++++...+.+ |.. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 4689999999999999999999999999999875 455443222211 110 0
Q ss_pred Cccc-----------chhHHHHHHhCCCcEEEEEeEEEEEe--cCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC
Q 007975 109 ARSI-----------VEPVRNIVRKKNVDICFWEAECFKID--AENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (583)
Q Consensus 109 ~~~i-----------~~~~~~~~~~~~i~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~ 175 (583)
...+ ...+++.+++.+ ++++.+++..++ .+.+.+.+.... ++.+++.||+||||||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~~~~~~~~~~v~V~~~~------g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREG--VRVIAGRGRLIDPGLGPHRVKVTTAD------GGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEeecccCCCEEEEEeCC------CceEEEecCEEEEcCCCCC
Confidence 0011 123445566666 667899998855 445566554321 1123699999999999999
Q ss_pred CCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhc
Q 007975 176 NTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLY 254 (583)
Q Consensus 176 ~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~ 254 (583)
..++.++.. +..+. ..+...+ . ..+++++|||+|++|+|+|..|+.+
T Consensus 152 ~~~p~~~~~~~~v~~---~~~~~~~-------------~-------~~~~~vvVIGgG~ig~E~A~~l~~~--------- 199 (466)
T PRK07845 152 RILPTAEPDGERILT---WRQLYDL-------------D-------ELPEHLIVVGSGVTGAEFASAYTEL--------- 199 (466)
T ss_pred CCCCCCCCCCceEEe---ehhhhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc---------
Confidence 866554432 22222 2111110 0 1234999999999999999998875
Q ss_pred CCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccC
Q 007975 255 PKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 255 p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
+.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|++++ ++++.+.. .+|++ +++|.|||++|
T Consensus 200 -----g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--l~~D~vl~a~G 271 (466)
T PRK07845 200 -----GVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTL-TDGRT--VEGSHALMAVG 271 (466)
T ss_pred -----CCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEE-CCCcE--EEecEEEEeec
Confidence 5799999999999999999999999999999999999999999995 45565543 34654 99999999999
Q ss_pred CCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 333 IAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 333 ~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
.+++ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 272 ~~pn--~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 315 (466)
T PRK07845 272 SVPN--TAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTG 315 (466)
T ss_pred CCcC--CCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccC
Confidence 6554 3222 455665 67799999999998 8999999999975
No 35
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1e-32 Score=295.99 Aligned_cols=263 Identities=24% Similarity=0.429 Sum_probs=207.3
Q ss_pred HHHHhcCC--CCCeEEEEcCCCCCCCCC-chhhhccccCCC-cc-cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEE
Q 007975 72 SFLKNLNN--PSYDVQVISPRNYFAFTP-LLPSVTCGTVEA-RS-IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYC 146 (583)
Q Consensus 72 ~aA~~L~~--~g~~Vtlie~~~~~~~~p-~l~~~~~g~~~~-~~-i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~ 146 (583)
+||++|++ ++++|||||+++++.|.| .++.+..+.... ++ +....+.++.+.++++. +.++|+.+|++++.|.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~V~~id~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVK-TNHEVIEVNDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEE-ecCEEEEEECCCCEEEE
Confidence 36777764 468999999999999988 478777776543 22 33344566678885542 47899999999999988
Q ss_pred ecCCCCCCCCCceEEee--cCEEEEccCCCCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhcc
Q 007975 147 RSSQNTNLNGKEEFCMD--YDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRI 223 (583)
Q Consensus 147 ~~~~~~~~~~~~~~~i~--yD~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~ 223 (583)
.+.. +. ..+. ||+||||||++|+.+++||++ ++.+.++++.++..+++.+.. ..+
T Consensus 80 ~~~~-----~~--~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~ 137 (427)
T TIGR03385 80 RNNK-----TN--ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKV 137 (427)
T ss_pred EECC-----CC--CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCC
Confidence 7532 11 1566 999999999999999999986 567778888888887776532 234
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-cCcccHHHHHHHHHHHHhCCCEEEeCCeEE
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDGIDVKLGSMVV 302 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-l~~~~~~~~~~~~~~L~~~GV~v~~~~~V~ 302 (583)
++|+|||||++|+|+|..+.+. +.+|+++++.+.+ .+.+++++.+.+.+.|+++||+++++++|+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~--------------g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 203 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER--------------GKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD 203 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence 6999999999999999988874 5789999999988 467889999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccccc
Q 007975 303 KVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (583)
Q Consensus 303 ~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~~ 378 (583)
++++++..+.. .+|++ +++|.+|||+|..++ . .+++.+++ +.+|+|.||+++|+ +.|+|||+|||+..+
T Consensus 204 ~i~~~~~~v~~-~~g~~--i~~D~vi~a~G~~p~--~-~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 204 SIEGEERVKVF-TSGGV--YQADMVILATGIKPN--S-ELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESH 274 (427)
T ss_pred EEecCCCEEEE-cCCCE--EEeCEEEECCCccCC--H-HHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEee
Confidence 99875542222 34664 999999999996554 3 45666666 56789999999998 899999999999764
No 36
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=305.51 Aligned_cols=266 Identities=21% Similarity=0.286 Sum_probs=192.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhc---------------------ccc------CCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVT---------------------CGT------VEA 109 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~---------------------~g~------~~~ 109 (583)
..++|||||||+||++||..|++.|.+|+|||++ .++++++...+. .|. .+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4589999999999999999999999999999987 555543221100 011 011
Q ss_pred cccchh------------HHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 110 RSIVEP------------VRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 110 ~~i~~~------------~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
..+... +..++... ..++++++++..+|.....|.+.++. .+.+.||+||||||++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~v~~~~g~--------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGN-PAITVLHGEARFKDDQTLIVRLNDGG--------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcc-CCeEEEEEEEEEecCCEEEEEeCCCc--------eEEEEcCEEEEcCCCCCCC
Confidence 111111 12223333 13778999999988765445443221 2379999999999999999
Q ss_pred CCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCC
Q 007975 178 FNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (583)
Q Consensus 178 ~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~ 257 (583)
|++||.++.. +.+..++.. . ...+++++|||+|++|+|+|..+.++
T Consensus 247 p~i~g~~~~~--~~~~~~~~~----------~----------~~~~~~vvViGgG~ig~E~A~~l~~~------------ 292 (561)
T PRK13748 247 PPIPGLKETP--YWTSTEALV----------S----------DTIPERLAVIGSSVVALELAQAFARL------------ 292 (561)
T ss_pred CCCCCCCccc--eEccHHHhh----------c----------ccCCCeEEEECCCHHHHHHHHHHHHc------------
Confidence 9999975422 122221110 0 01235999999999999999999876
Q ss_pred CCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 258 ~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+|+++++. .+++.+++++.+.+++.|++.||++++++.|++++. +.+.+.. .+++ +++|.||||+|..+
T Consensus 293 --g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~-~~~~---i~~D~vi~a~G~~p 365 (561)
T PRK13748 293 --GSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTT-GHGE---LRADKLLVATGRAP 365 (561)
T ss_pred --CCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEe-cCCe---EEeCEEEEccCCCc
Confidence 5799999984 577888999999999999999999999999999963 3444443 2342 99999999999655
Q ss_pred chhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 336 HAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 336 ~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+ +..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 366 n--~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~ 406 (561)
T PRK13748 366 N--TRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTD 406 (561)
T ss_pred C--CCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCC
Confidence 4 4323 455666 67789999999999 8999999999985
No 37
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-32 Score=297.86 Aligned_cols=263 Identities=25% Similarity=0.340 Sum_probs=187.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhh-------------------c-cc------cCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSV-------------------T-CG------TVEAR 110 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~-------------------~-~g------~~~~~ 110 (583)
++++|||||||+||++||..|++.|.+|+|||+ +.++++++...+ . .| ..+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 458999999999999999999999999999999 455554321100 0 01 11111
Q ss_pred ccchhHH------------HHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 111 SIVEPVR------------NIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 111 ~i~~~~~------------~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
++....+ ..+...+ +.++.+++..++.. .+.+ ++ .++.||+||||||+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~v~v-~~----------~~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPK--IDKIKGTARFVDPN--TVEV-NG----------ERIEAKNIVIATGSR--VP 143 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCC--CEEEEEEEEEccCC--EEEE-Cc----------EEEEeCEEEEeCCCC--CC
Confidence 2222222 2223334 56778888777653 4554 21 279999999999998 45
Q ss_pred CCCCccc-cCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCC
Q 007975 179 NTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKV 257 (583)
Q Consensus 179 ~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~ 257 (583)
.+||... ....+.+.+++..+. ..+++++|||+|++|+|+|..+.++
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~~~--------------------~~~k~v~VIGgG~~g~E~A~~l~~~------------ 191 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFELD--------------------KLPKSLAVIGGGVIGLELGQALSRL------------ 191 (460)
T ss_pred CCCCCcccCCCcEECchHHhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHc------------
Confidence 6677532 111122333322111 1345999999999999999999876
Q ss_pred CCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC---eEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 258 KDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 258 ~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+|+++++.+++++.+++++.+.+++.|+++ |+++++++|++++.+ .+++.. .+|+..++++|.||+++|..
T Consensus 192 --g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~-~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 192 --GVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE-KGGKTETIEADYVLVATGRR 267 (460)
T ss_pred --CCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE-cCCceEEEEeCEEEEccCCc
Confidence 57999999999999999999999999999999 999999999999743 355432 23444469999999999954
Q ss_pred CchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 268 --p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~ 309 (460)
T PRK06292 268 --PNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNG 309 (460)
T ss_pred --cCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCC
Confidence 444332 455666 66789999999999 8999999999975
No 38
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.3e-32 Score=297.80 Aligned_cols=267 Identities=19% Similarity=0.252 Sum_probs=191.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC--------CCCCCCchhhhcc--------------------cc---
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTC--------------------GT--- 106 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~--------~~~~~p~l~~~~~--------------------g~--- 106 (583)
.++|||||||+||+.+|..+++.|.+|+|||+.. .++++++...+.+ |.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999731 2444332111100 11
Q ss_pred ----CCCc-----------ccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEcc
Q 007975 107 ----VEAR-----------SIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (583)
Q Consensus 107 ----~~~~-----------~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAt 171 (583)
.+.. .+...++.+++..+ +++++++...+++. +|.+.... + +...+.||+|||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~--v~~i~G~a~f~~~~--~v~v~~~~-----g-~~~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKK--VNYENAYAEFVDKH--RIKATNKK-----G-KEKIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEcCCC--EEEEeccC-----C-CceEEEeCEEEEec
Confidence 0000 01122344556666 66889999999865 56554321 1 12379999999999
Q ss_pred CCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHh
Q 007975 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (583)
Q Consensus 172 G~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~ 251 (583)
|++|+.|++||..+..+ +.+++..+ + ...++++|||||++|+|+|..++++
T Consensus 152 Gs~p~~p~ipG~~~~~~---~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~------ 202 (484)
T TIGR01438 152 GERPRYPGIPGAKELCI---TSDDLFSL-------------P-------YCPGKTLVVGASYVALECAGFLAGI------ 202 (484)
T ss_pred CCCCCCCCCCCccceee---cHHHhhcc-------------c-------ccCCCEEEECCCHHHHHHHHHHHHh------
Confidence 99999999999755322 22222211 0 1224899999999999999999886
Q ss_pred hhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCe-eEEeecceEE
Q 007975 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGE-TSSMPYGMVV 328 (583)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~-~~~i~~D~vI 328 (583)
+.+|+++++ +++++.+++++++.+++.|+++||++++++.+++++. +.+.+.. .+|+ ..++++|.||
T Consensus 203 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~~~~~~~i~~D~vl 272 (484)
T TIGR01438 203 --------GLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTF-TDSTNGIEEEYDTVL 272 (484)
T ss_pred --------CCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE-ecCCcceEEEeCEEE
Confidence 579999997 5889999999999999999999999999999988863 3443332 1232 2249999999
Q ss_pred EccCCCCchhHHHH-HHHhCc--CC-CcceEeCCCCccCCCCCEEEcCcccc
Q 007975 329 WSTGIAPHAIIKDF-MKQVGQ--TN-RRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~~~--~~-~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
||+|..++ +..+ ++.+++ +. +|+|.||+++|| +.|+|||+|||+.
T Consensus 273 ~a~G~~pn--~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~ 321 (484)
T TIGR01438 273 LAIGRDAC--TRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILE 321 (484)
T ss_pred EEecCCcC--CCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecC
Confidence 99996544 4333 355665 33 488999999998 8999999999985
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-32 Score=297.08 Aligned_cols=263 Identities=21% Similarity=0.328 Sum_probs=188.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhh--------------------cccc--------CCCcc
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSV--------------------TCGT--------VEARS 111 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~--------------------~~g~--------~~~~~ 111 (583)
+|||||||+||++||..|++.|.+|+|||++. ++++++...+ ..|. .+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999875 4443221110 0111 11111
Q ss_pred cc-----------hhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCC
Q 007975 112 IV-----------EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNT 180 (583)
Q Consensus 112 i~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~i 180 (583)
+. ..+..+++..+ ++++++++..+|.....|...++ ..++.||+||||||++|..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~~~~v~v~~~~~---------~~~~~~d~lviATGs~p~~~p~ 149 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNK--IKVIQGKASFETDHRVRVEYGDK---------EEVVDAEQFIIAAGSEPTELPF 149 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEccCCEEEEeeCCC---------cEEEECCEEEEeCCCCCCCCCC
Confidence 11 11223344455 67889999988755433433211 2379999999999999988877
Q ss_pred CCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCC
Q 007975 181 PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS 260 (583)
Q Consensus 181 pG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~ 260 (583)
++.+.. . +.+.+++..+ . ...++++|||||++|+|+|..+.++ +
T Consensus 150 ~~~~~~-~-v~~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~--------------g 193 (458)
T PRK06912 150 APFDGK-W-IINSKHAMSL-------------P-------SIPSSLLIVGGGVIGCEFASIYSRL--------------G 193 (458)
T ss_pred CCCCCC-e-EEcchHHhCc-------------c-------ccCCcEEEECCCHHHHHHHHHHHHc--------------C
Confidence 776422 1 1222222211 1 1234999999999999999988765 5
Q ss_pred ceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCchh
Q 007975 261 VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPHAI 338 (583)
Q Consensus 261 ~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 338 (583)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++.+ .+.+.. +|+..++++|.||+|+|.+ |+
T Consensus 194 ~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~--~g~~~~i~~D~vivA~G~~--p~ 269 (458)
T PRK06912 194 TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY--EGSIQEVNAEFVLVSVGRK--PR 269 (458)
T ss_pred CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE--CCceEEEEeCEEEEecCCc--cC
Confidence 79999999999999999999999999999999999999999999754 344443 3543459999999999954 44
Q ss_pred HHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 339 IKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 339 ~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+ ++..++ +.+| |.||+++|| +.|||||+|||+.
T Consensus 270 ~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~ 308 (458)
T PRK06912 270 VQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG 308 (458)
T ss_pred CCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC
Confidence 4333 455565 4445 999999998 8999999999974
No 40
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.3e-32 Score=279.01 Aligned_cols=271 Identities=17% Similarity=0.170 Sum_probs=190.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC---CCCCCchhhhcc--ccCCCcccchhHHHHHHhCCCcEEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY---FAFTPLLPSVTC--GTVEARSIVEPVRNIVRKKNVDICFW 130 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~---~~~~p~l~~~~~--g~~~~~~i~~~~~~~~~~~~i~v~~~ 130 (583)
.+.++|+|||||||||+||..|++.|+++++||.... +.+.+..+.+.. .......+...+.+....++. ++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFET--EII 81 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCC--EEE
Confidence 3568999999999999999999999999999985432 111121111111 112222345566677776764 455
Q ss_pred EeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHc
Q 007975 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKA 210 (583)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~ 210 (583)
.++|+.|+...+.+.+.... ..+.||+||+|||+.|+.+++||.+... .+.+..+..+.
T Consensus 82 ~~~v~~v~~~~~~~~v~~~~---------~~~~~d~vilAtG~~~~~~~i~g~~~~~--~~~v~~~~~~~---------- 140 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTGDS---------GEYTCDALIIATGASARYLGLPSEEAFK--GRGVSACATCD---------- 140 (321)
T ss_pred eeEEEEEEecCCeEEEEecC---------CEEEECEEEECCCCCCCCCCCCCHHHcC--CCcEEEeecCC----------
Confidence 67788898887776665321 1689999999999999999999964321 11111111000
Q ss_pred CCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHh
Q 007975 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSR 290 (583)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~ 290 (583)
.....+++++|||+|++|+|+|..|+++ +.+|+++++.+.+. .++.+.+.+++.|++
T Consensus 141 -------~~~~~g~~vvVvGgG~~g~e~A~~l~~~--------------~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~ 197 (321)
T PRK10262 141 -------GFFYRNQKVAVIGGGNTAVEEALYLSNI--------------ASEVHLIHRRDGFR--AEKILIKRLMDKVEN 197 (321)
T ss_pred -------HHHcCCCEEEEECCCHHHHHHHHHHHhh--------------CCEEEEEEECCccC--CCHHHHHHHHhhccC
Confidence 1113467999999999999999999876 46999999988753 346678888999999
Q ss_pred CCCEEEeCCeEEEEeCC-----eEEEEEcC-CCeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCCcceEeCC-----
Q 007975 291 DGIDVKLGSMVVKVTDK-----EIFTKVRG-NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE----- 358 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~~-----~v~~~~~~-~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~----- 358 (583)
.||++++++.|++++++ .+++.+.. +++..++++|.|||++|.+++.. +... ++ .++|+|.||+
T Consensus 198 ~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~---l~~~-~l~~~~g~i~vd~~~~~~ 273 (321)
T PRK10262 198 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA---IFEG-QLELENGYIKVQSGIHGN 273 (321)
T ss_pred CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh---Hhhc-cccccCCEEEECCCCccc
Confidence 99999999999999865 25555422 23334699999999999665542 3321 33 3468899998
Q ss_pred CCccCCCCCEEEcCccccc
Q 007975 359 WLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 359 ~l~~~~~~~VyAiGD~a~~ 377 (583)
+++| ++|+|||+|||+..
T Consensus 274 ~~~t-~~~~VyA~GD~~~~ 291 (321)
T PRK10262 274 ATQT-SIPGVFAAGDVMDH 291 (321)
T ss_pred cccc-CCCCEEECeeccCC
Confidence 5677 89999999999864
No 41
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.1e-31 Score=287.67 Aligned_cols=270 Identities=19% Similarity=0.335 Sum_probs=189.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcC------CCCCCCCCchhhhc---------------------cccC---
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISP------RNYFAFTPLLPSVT---------------------CGTV--- 107 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~------~~~~~~~p~l~~~~---------------------~g~~--- 107 (583)
.++|+|||||+||++||.++++.|.+|+|||+ ....+++.....+. .|..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 57999999999999999999999999999998 23344432111110 0110
Q ss_pred ---CCcccc-----------hhHHHHHHhCCCcEEEEEeEEEEEecC--CCEEEEecCCCCCCCCCceEEeecCEEEEcc
Q 007975 108 ---EARSIV-----------EPVRNIVRKKNVDICFWEAECFKIDAE--NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (583)
Q Consensus 108 ---~~~~i~-----------~~~~~~~~~~~i~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~i~yD~LViAt 171 (583)
+...+. ..+..+++..+ ++++.+++..++.. .++|.+.... ..++.||+|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~~~v~v~~~~--------~~~~~~d~lViAT 153 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNK--ITVLKGRGSFVGKTDAGYEIKVTGED--------ETVITAKHVIIAT 153 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEecCCCCCCEEEEecCC--------CeEEEeCEEEEeC
Confidence 000011 12333444555 66789999888743 4566664321 1279999999999
Q ss_pred CCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHh
Q 007975 172 GARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (583)
Q Consensus 172 G~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~ 251 (583)
|+.|..+ |+.......+.+.+++..+ . ..+++++|||+|++|+|+|..+.++
T Consensus 154 Gs~p~~~--p~~~~~~~~~~~~~~~~~~-------------~-------~~~~~vvVvGgG~~g~E~A~~l~~~------ 205 (475)
T PRK06327 154 GSEPRHL--PGVPFDNKIILDNTGALNF-------------T-------EVPKKLAVIGAGVIGLELGSVWRRL------ 205 (475)
T ss_pred CCCCCCC--CCCCCCCceEECcHHHhcc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHc------
Confidence 9998653 3322111111222222111 0 1235999999999999999988875
Q ss_pred hhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEc-CCCeeEEeecceEE
Q 007975 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVR-GNGETSSMPYGMVV 328 (583)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~-~~G~~~~i~~D~vI 328 (583)
+.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|++++.+ .+.+... .+|++.++++|.|+
T Consensus 206 --------g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 206 --------GAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred --------CCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 579999999999999999999999999999999999999999999743 4444321 23544469999999
Q ss_pred EccCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 329 WSTGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 329 ~a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+++|..++ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 278 ~a~G~~p~--~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~ 325 (475)
T PRK06327 278 VSIGRVPN--TDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVR 325 (475)
T ss_pred EccCCccC--CCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccC
Confidence 99996544 4322 455565 67899999999998 8999999999975
No 42
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=9.4e-31 Score=284.68 Aligned_cols=263 Identities=21% Similarity=0.275 Sum_probs=186.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC--------CCCCCCchhhhcc---------------------c---
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------YFAFTPLLPSVTC---------------------G--- 105 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~--------~~~~~p~l~~~~~---------------------g--- 105 (583)
+++|+||||||||++||..|++.|.+|+|||+.. .++++++...+.+ |
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999632 2444432111110 1
Q ss_pred --cCCCcccchhHHHH-----------HHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccC
Q 007975 106 --TVEARSIVEPVRNI-----------VRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (583)
Q Consensus 106 --~~~~~~i~~~~~~~-----------~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG 172 (583)
..+..++....... ++..+ +.++++++...+ .++|.+.+.. +...+.||+||||||
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--v~~i~g~a~~~~--~~~v~v~~~~-------~~~~i~~d~lIIATG 153 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSK--VEYINGLAKLKD--EHTVSYGDNS-------QEETITAKYILIATG 153 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcC--cEEEEEEEEEcc--CCEEEEeeCC-------CceEEECCEEEEecC
Confidence 11112222222222 22233 667888887755 4566664321 123799999999999
Q ss_pred CCCCCC-CCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHh
Q 007975 173 ARANTF-NTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLF 251 (583)
Q Consensus 173 ~~~~~~-~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~ 251 (583)
+.|..| ++||.++... +.+++..+. ...++++|||||++|+|+|..|+.+
T Consensus 154 s~p~~p~~i~G~~~~~~---~~~~~~~~~--------------------~~~~~vvIIGgG~iG~E~A~~l~~~------ 204 (499)
T PTZ00052 154 GRPSIPEDVPGAKEYSI---TSDDIFSLS--------------------KDPGKTLIVGASYIGLETAGFLNEL------ 204 (499)
T ss_pred CCCCCCCCCCCccceee---cHHHHhhhh--------------------cCCCeEEEECCCHHHHHHHHHHHHc------
Confidence 999887 4898754322 223222110 1234999999999999999999886
Q ss_pred hhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEE
Q 007975 252 KLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVW 329 (583)
Q Consensus 252 ~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~ 329 (583)
+.+||++++ +.+++.+++++++.+++.|+++||++++++.+++++. +.+.+.. .+|++ +++|.|||
T Consensus 205 --------G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--i~~D~vl~ 272 (499)
T PTZ00052 205 --------GFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLF-SDGTT--ELFDTVLY 272 (499)
T ss_pred --------CCcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEcCEEEE
Confidence 579999987 4678889999999999999999999999999988864 3444433 34664 89999999
Q ss_pred ccCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 330 STGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 330 a~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++|.++ ++..+ ++.+++ +.+|++.+++. +| +.|+|||+|||+.
T Consensus 273 a~G~~p--n~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~ 318 (499)
T PTZ00052 273 ATGRKP--DIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE 318 (499)
T ss_pred eeCCCC--CccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence 999654 44333 355665 66788777777 77 8999999999984
No 43
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.98 E-value=4.3e-31 Score=290.93 Aligned_cols=266 Identities=22% Similarity=0.277 Sum_probs=183.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh-hh--cccc--CCCcccchhHHHHHHhCCCcEEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP-SV--TCGT--VEARSIVEPVRNIVRKKNVDICFWE 131 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~-~~--~~g~--~~~~~i~~~~~~~~~~~~i~v~~~~ 131 (583)
..++|+||||||||++||.+|++.|++|+|||++. +++..... .. .++. ....++...++..++..+ ++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~g--v~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFG--VKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcC--CEEec
Confidence 35899999999999999999999999999999875 33322111 11 1111 122356667777777777 45678
Q ss_pred eEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
++|+.++.+++...+.... + .+.||+||||||+.|+.+++||.++.. ...+.....+
T Consensus 80 ~~V~~i~~~~~~~~V~~~~-------g--~~~a~~lVlATGa~p~~~~ipG~~~~~--~~~v~~~~~~------------ 136 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTAR-------G--DYKTLAVLIATGASPRKLGFPGEEEFT--GRGVAYCATC------------ 136 (555)
T ss_pred cEEEEEEecCCEEEEEecC-------C--EEEEeEEEECCCCccCCCCCCCHHHhC--CceEEEEeec------------
Confidence 8999999876544443322 1 688999999999999999999964311 0000000000
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhC
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRD 291 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~ 291 (583)
+.....+++|+|||||++|+|+|..+..+ +.+|+++++.+.+.. .... ..+.++.+
T Consensus 137 -----~~~~~~g~~VvVIGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~~~~--~~~~---~~~~~~~~ 192 (555)
T TIGR03143 137 -----DGEFFTGMDVFVIGGGFAAAEEAVFLTRY--------------ASKVTVIVREPDFTC--AKLI---AEKVKNHP 192 (555)
T ss_pred -----ChhhcCCCEEEEECCCHHHHHHHHHHHcc--------------CCEEEEEEeCCcccc--CHHH---HHHHHhCC
Confidence 00112467999999999999999998765 579999999887632 2222 23334557
Q ss_pred CCEEEeCCeEEEEeCCe-E---EEEEcCCCeeEEe--ecce----EEEccCCCCchhHHHHHHH-hCcCCCcceEeCCCC
Q 007975 292 GIDVKLGSMVVKVTDKE-I---FTKVRGNGETSSM--PYGM----VVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWL 360 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~-v---~~~~~~~G~~~~i--~~D~----vI~a~G~~~~p~~~~l~~~-~~~~~~g~i~Vd~~l 360 (583)
||++++++.|+++.++. + .+....+|+..++ ++|. |||++|..|+. .++.. +.++.+|+|.||+++
T Consensus 193 gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~---~l~~~~l~l~~~G~I~vd~~~ 269 (555)
T TIGR03143 193 KIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSS---ELFKGVVELDKRGYIPTNEDM 269 (555)
T ss_pred CcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCCh---hHHhhhcccCCCCeEEeCCcc
Confidence 99999999999998643 2 3333345654333 4776 99999966554 23332 334678999999999
Q ss_pred ccCCCCCEEEcCcccc
Q 007975 361 RVEGSDSIYALGDCAT 376 (583)
Q Consensus 361 ~~~~~~~VyAiGD~a~ 376 (583)
+| +.|+|||+|||+.
T Consensus 270 ~T-s~p~IyAaGDv~~ 284 (555)
T TIGR03143 270 ET-NVPGVYAAGDLRP 284 (555)
T ss_pred cc-CCCCEEEceeccC
Confidence 99 8999999999974
No 44
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.98 E-value=2.4e-30 Score=285.92 Aligned_cols=270 Identities=17% Similarity=0.253 Sum_probs=187.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC-CCCCCCCchhhhcc-----------------------ccC------
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR-NYFAFTPLLPSVTC-----------------------GTV------ 107 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~-~~~~~~p~l~~~~~-----------------------g~~------ 107 (583)
.+||+|||+|+||+.+|..+++.|.+|+|||+. ..++++++...+.+ |..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 579999999999999999999999999999975 24555432111110 110
Q ss_pred ------------------CCcccc-----------hhHHHHHHhCCC-----cEEEEEeEEEEEecCCCEEEEecCCCCC
Q 007975 108 ------------------EARSIV-----------EPVRNIVRKKNV-----DICFWEAECFKIDAENKKVYCRSSQNTN 153 (583)
Q Consensus 108 ------------------~~~~i~-----------~~~~~~~~~~~i-----~v~~~~~~v~~id~~~~~v~~~~~~~~~ 153 (583)
+...+. ..+...++..++ .+.++.++...+++. +|.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~--~v~v~~~---- 269 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN--TIKSEKS---- 269 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC--eEEEccC----
Confidence 000111 112233333321 256777777666643 4544311
Q ss_pred CCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCCh
Q 007975 154 LNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGP 233 (583)
Q Consensus 154 ~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~ 233 (583)
+ .++.||+||||||+.|..|++++.+. ..+.+.+++..+.. .+++++|||||+
T Consensus 270 --g---~~i~ad~lIIATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~--------------------lpk~VvIVGgG~ 322 (659)
T PTZ00153 270 --G---KEFKVKNIIIATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG--------------------LQNYMGIVGMGI 322 (659)
T ss_pred --C---EEEECCEEEEcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh--------------------cCCceEEECCCH
Confidence 1 27999999999999998877666432 12334454443211 134999999999
Q ss_pred hHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHH-HhCCCEEEeCCeEEEEeCCe----
Q 007975 234 TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF-SRDGIDVKLGSMVVKVTDKE---- 308 (583)
Q Consensus 234 tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L-~~~GV~v~~~~~V~~v~~~~---- 308 (583)
+|+|+|..+..+ +.+||++++.+++++.+++++.+.+.+.+ +++||++++++.|++|+++.
T Consensus 323 iGvE~A~~l~~~--------------G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~ 388 (659)
T PTZ00153 323 IGLEFMDIYTAL--------------GSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQP 388 (659)
T ss_pred HHHHHHHHHHhC--------------CCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE
Confidence 999999888775 57999999999999999999999999876 67999999999999997532
Q ss_pred EEEEEc--C----CC------eeEEeecceEEEccCCCCchhHHHH-HHHhCc-CCCcceEeCCCCccCC-----CCCEE
Q 007975 309 IFTKVR--G----NG------ETSSMPYGMVVWSTGIAPHAIIKDF-MKQVGQ-TNRRALATDEWLRVEG-----SDSIY 369 (583)
Q Consensus 309 v~~~~~--~----~G------~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~~-~~~g~i~Vd~~l~~~~-----~~~Vy 369 (583)
+++... . ++ +..++++|.||||+|. .|++..+ ++.+++ .++|+|.||++|||.. .|+||
T Consensus 389 v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr--~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IY 466 (659)
T PTZ00153 389 VIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR--KPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIF 466 (659)
T ss_pred EEEEEeccccccccccccccccceEEEcCEEEEEECc--ccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEE
Confidence 544321 1 11 1125999999999995 4555444 456666 3468999999999942 69999
Q ss_pred EcCcccc
Q 007975 370 ALGDCAT 376 (583)
Q Consensus 370 AiGD~a~ 376 (583)
|+|||+.
T Consensus 467 AiGDv~g 473 (659)
T PTZ00153 467 CIGDANG 473 (659)
T ss_pred EEEecCC
Confidence 9999964
No 45
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.98 E-value=3.5e-30 Score=277.42 Aligned_cols=259 Identities=20% Similarity=0.310 Sum_probs=183.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc--------------------cc------CCCcc
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC--------------------GT------VEARS 111 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~--------------------g~------~~~~~ 111 (583)
.++|||||+|+||..||..+ .|.+|+|||++. ++++++...+.+ |. .+...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 47999999999999987655 599999999853 455432211110 11 11111
Q ss_pred c--------chhHH----HH-H--HhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 112 I--------VEPVR----NI-V--RKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 112 i--------~~~~~----~~-~--~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
+ ...++ .. + ++.+ +++++++....+ .++|.+.++. ++.||+||||||++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~~~~--~~~V~~~~g~----------~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPN--IDVYDGHARFVG--PRTLRTGDGE----------EITGDQIVIAAGSRPY 144 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCC--eEEEEEEEEEec--CCEEEECCCc----------EEEeCEEEEEECCCCC
Confidence 1 11111 11 1 1134 667788776664 5677775432 7999999999999998
Q ss_pred CCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCC
Q 007975 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (583)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~ 256 (583)
.|++++. ....+.+.+++..+.+ .+++++|||||++|+|+|..+.++
T Consensus 145 ~p~~~~~--~~~~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~~l~~~----------- 191 (452)
T TIGR03452 145 IPPAIAD--SGVRYHTNEDIMRLPE--------------------LPESLVIVGGGYIAAEFAHVFSAL----------- 191 (452)
T ss_pred CCCCCCC--CCCEEEcHHHHHhhhh--------------------cCCcEEEECCCHHHHHHHHHHHhC-----------
Confidence 7764432 2223556666654421 234999999999999999999875
Q ss_pred CCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 257 VKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 257 ~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+|+++++.+++++.+++++.+.+.+.+ +.||+++++++|++++. +++.+.. .+|++ +++|.|++++|.+
T Consensus 192 ---G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~~ 264 (452)
T TIGR03452 192 ---GTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTL-DDGST--VTADVLLVATGRV 264 (452)
T ss_pred ---CCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEE-cCCCE--EEcCEEEEeeccC
Confidence 57999999999999999999988887655 46899999999999973 4555543 34654 9999999999965
Q ss_pred CchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
++ +..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 265 pn--~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (452)
T TIGR03452 265 PN--GDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSS 306 (452)
T ss_pred cC--CCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccC
Confidence 44 4222 345565 57899999999997 8999999999975
No 46
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.97 E-value=9.2e-31 Score=286.25 Aligned_cols=268 Identities=21% Similarity=0.319 Sum_probs=188.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc----hhhhcc-ccCCCcccchhHHHHHHhCCCcEEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LPSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~----l~~~~~-g~~~~~~i~~~~~~~~~~~~i~v~~~ 130 (583)
...++|+|||||+||++||..|++.|++|+||++. +++++. ++.+.. ......++...+.+.++++++++. .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~-~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM-E 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE-c
Confidence 34689999999999999999999999999999853 333332 111110 012233566677788888886653 4
Q ss_pred EeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHc
Q 007975 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKA 210 (583)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~ 210 (583)
..+|+.++.+.+.+.+.... + ..+.||+||+|+|+.++.+++||..++.. ..+......
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~-----g---~~i~~d~lIlAtGa~~~~~~ipG~~~~~~--~~v~~~~~~----------- 345 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLES-----G---EVLKAKSVIVATGARWRKLGVPGEKEYIG--KGVAYCPHC----------- 345 (515)
T ss_pred CCEEEEEEecCCeEEEEECC-----C---CEEEeCEEEECCCCCcCCCCCCCHHHcCC--CeEEEeecc-----------
Confidence 67899998776544433221 1 17999999999999999899998643210 000000000
Q ss_pred CCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHh
Q 007975 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSR 290 (583)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~ 290 (583)
......+++|+|||||++|+|+|..|+.+ +.+|+++++.+.+.. ...+.+.|++
T Consensus 346 ------~~~~~~~k~VvViGgG~~g~E~A~~L~~~--------------g~~Vtli~~~~~l~~------~~~l~~~l~~ 399 (515)
T TIGR03140 346 ------DGPFFKGKDVAVIGGGNSGIEAAIDLAGI--------------VRHVTVLEFADELKA------DKVLQDKLKS 399 (515)
T ss_pred ------ChhhcCCCEEEEECCcHHHHHHHHHHHhc--------------CcEEEEEEeCCcCCh------hHHHHHHHhc
Confidence 00012456999999999999999999875 469999998887642 2445677776
Q ss_pred -CCCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHH-hCcCCCcceEeCCCCccC
Q 007975 291 -DGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWLRVE 363 (583)
Q Consensus 291 -~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~~~~g~i~Vd~~l~~~ 363 (583)
.||++++++.|++++++ .+++.+..+|+..++++|.|||++|..|+ + .+++. +.++.+|+|.||+++||
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn--~-~~l~~~~~~~~~G~I~vd~~~~T- 475 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPN--T-EWLKDAVELNRRGEIVIDERGRT- 475 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCC--c-hHHhhhcccCCCCeEEECCCCCC-
Confidence 59999999999999765 25555433454456999999999996554 3 33333 33367799999999998
Q ss_pred CCCCEEEcCccccc
Q 007975 364 GSDSIYALGDCATV 377 (583)
Q Consensus 364 ~~~~VyAiGD~a~~ 377 (583)
+.|+|||+|||+..
T Consensus 476 s~p~IyAaGDv~~~ 489 (515)
T TIGR03140 476 SVPGIFAAGDVTTV 489 (515)
T ss_pred CCCCEEEcccccCC
Confidence 89999999999874
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=6.3e-31 Score=282.75 Aligned_cols=271 Identities=18% Similarity=0.195 Sum_probs=177.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
..+.++|+|||||+||+++|..|++.|++|+|||+++..++.. .+.+.... .+.++.....+.+.+.++ ++..+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gip~~~-~~~~~~~~~~~~l~~~gv--~~~~~~~ 205 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-TYGIPEFR-LPKEIVVTEIKTLKKLGV--TFRMNFL 205 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe-eecCCCcc-CCHHHHHHHHHHHHhCCc--EEEeCCc
Confidence 3456899999999999999999999999999999987654431 11111111 123444444556667774 4444443
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCC-CCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 212 (583)
. .+.+.+.+. ...||+||||||+ .|..+++||.+ .+++ +..+...... +....+ .
T Consensus 206 v-----~~~v~~~~~-----------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~---~~~~~l~~~~-~~~~~~---~ 262 (449)
T TIGR01316 206 V-----GKTATLEEL-----------FSQYDAVFIGTGAGLPKLMNIPGEELCGVY---SANDFLTRAN-LMKAYE---F 262 (449)
T ss_pred c-----CCcCCHHHH-----------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcE---EHHHHHHHHh-hccccc---c
Confidence 2 223333221 3469999999998 58888999964 2222 2222211110 100000 0
Q ss_pred CCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-cCcccHHHHHHHHHHHHhC
Q 007975 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRD 291 (583)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-l~~~~~~~~~~~~~~L~~~ 291 (583)
+.. ......+++|+|||||++|+|+|..+.++ +.+|+++++.++. ++.. ....+.+++.
T Consensus 263 ~~~-~~~~~~gk~VvVIGgG~~a~d~A~~l~~~--------------G~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~ 322 (449)
T TIGR01316 263 PHA-DTPVYAGKSVVVIGGGNTAVDSARTALRL--------------GAEVHCLYRRTREDMTAR-----VEEIAHAEEE 322 (449)
T ss_pred ccc-CCcccCCCeEEEECCCHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCCC-----HHHHHHHHhC
Confidence 000 00113567999999999999999999886 5689999988653 2221 2233668889
Q ss_pred CCEEEeCCeEEEEeC---CeE---EEEEc------CC---------CeeEEeecceEEEccCCCCchhHHHHHHHhCc--
Q 007975 292 GIDVKLGSMVVKVTD---KEI---FTKVR------GN---------GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-- 348 (583)
Q Consensus 292 GV~v~~~~~V~~v~~---~~v---~~~~~------~~---------G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-- 348 (583)
||++++++.++++.+ +.+ ++... .+ |+..++++|+||+++|..++. .+++..++
T Consensus 323 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~---~~l~~~gl~~ 399 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP---IMAETTRLKT 399 (449)
T ss_pred CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc---hhhhccCccc
Confidence 999999999999853 223 33210 11 333469999999999965543 45555665
Q ss_pred CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 349 TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 349 ~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+.+|+|.||++++| +.|+|||+|||+.
T Consensus 400 ~~~G~i~vd~~~~T-s~~~VfA~GD~~~ 426 (449)
T TIGR01316 400 SERGTIVVDEDQRT-SIPGVFAGGDIIL 426 (449)
T ss_pred CCCCeEEeCCCCcc-CCCCEEEecCCCC
Confidence 56789999999998 8999999999975
No 48
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=4.5e-30 Score=291.55 Aligned_cols=262 Identities=20% Similarity=0.220 Sum_probs=173.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+||||||||++||..|++.|++|||||+++..++... + ..+....+.+......+.+...|++ +..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~-~-~IP~~rlp~e~l~~~ie~l~~~GVe--~~~g~-- 608 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK-N-IIPEFRISAESIQKDIELVKFHGVE--FKYGC-- 608 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee-e-cccccCCCHHHHHHHHHHHHhcCcE--EEEec--
Confidence 3568999999999999999999999999999999987655421 1 1122112223333334555667744 43331
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
+. .+.+... ....||+||||||+. +..+++||..+.. +..++....+...
T Consensus 609 --~~---d~~ve~l----------~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~avefL~~~~~~------------ 659 (1012)
T TIGR03315 609 --SP---DLTVAEL----------KNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLEFLRAFKEG------------ 659 (1012)
T ss_pred --cc---ceEhhhh----------hcccccEEEECCCCCCCCCCCcCCCCcce--eeHHHHHHHhhcc------------
Confidence 11 1222211 156799999999998 4455778754322 2222211111100
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCC-ceEEEEecCC-cccCcccHHHHHHHHHHHHhCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~-~~Vtlv~~~~-~il~~~~~~~~~~~~~~L~~~G 292 (583)
......+++|+|||||++|+|+|..+.+. .+ .+|+++++.+ ..+|...+++. + +.+.|
T Consensus 660 --~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl-------------~Ga~kVtLVyRr~~~~Mpa~~eEl~----~-aleeG 719 (1012)
T TIGR03315 660 --PTINPLGKHVVVVGGGNTAMDAARAALRV-------------PGVEKVTVVYRRTKRYMPASREELE----E-ALEDG 719 (1012)
T ss_pred --ccccccCCeEEEECCCHHHHHHHHHHHHh-------------CCCceEEEEEccCccccccCHHHHH----H-HHHcC
Confidence 00113477999999999999999887764 13 4899999876 45666555442 2 23579
Q ss_pred CEEEeCCeEEEEeCCeEEEEE--------------cCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEe
Q 007975 293 IDVKLGSMVVKVTDKEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALAT 356 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~v~~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~V 356 (583)
|++++++.+.+++++.+++.. ..+|+..++++|+||+|+|..++ . .+++.+++ +.+|++.|
T Consensus 720 Ve~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pn--t-~lle~~GL~ld~~G~I~V 796 (1012)
T TIGR03315 720 VDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVD--T-DLLQKNGIPLDEYGWPVV 796 (1012)
T ss_pred CEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCC--h-HHHHhcCcccCCCCCEEe
Confidence 999999999998866554431 12355557999999999996554 3 45566665 67789999
Q ss_pred CCC-CccCCCCCEEEcCcccc
Q 007975 357 DEW-LRVEGSDSIYALGDCAT 376 (583)
Q Consensus 357 d~~-l~~~~~~~VyAiGD~a~ 376 (583)
|++ +++ +.|+|||+|||+.
T Consensus 797 D~~~~~T-s~pgVFAaGD~a~ 816 (1012)
T TIGR03315 797 NQATGET-NITNVFVIGDANR 816 (1012)
T ss_pred CCCCCcc-CCCCEEEEeCcCC
Confidence 986 776 8999999999974
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-30 Score=280.51 Aligned_cols=273 Identities=18% Similarity=0.193 Sum_probs=177.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
..+.++|+|||||+||++||.+|++.|++|+|+|+.+..++.. .+......+..+++.....+.+++.++++ .....
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~~gv~i--~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL-VYGIPEFRLPKETVVKKEIENIKKLGVKI--ETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee-eecCCCccCCccHHHHHHHHHHHHcCCEE--EcCCE
Confidence 4467899999999999999999999999999999987655432 11111112222335555566777788554 33332
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCC-CCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASL 212 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 212 (583)
. .+.+.+.+.. ..+.||+||||||+ .|+.+++||.+ ++++ +..+.....+..... .
T Consensus 214 v-----~~~v~~~~~~---------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~---~~~~~l~~~~~~~~~-~---- 271 (464)
T PRK12831 214 V-----GKTVTIDELL---------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVF---SANEFLTRVNLMKAY-K---- 271 (464)
T ss_pred E-----CCcCCHHHHH---------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcE---EHHHHHHHHHhcccc-c----
Confidence 2 1223322211 14679999999999 58889999975 2332 222222211110000 0
Q ss_pred CCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhC
Q 007975 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRD 291 (583)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~ 291 (583)
+.. +.....+++|+|||||++|+|+|..+.++ +.+|+++++.+. .++....++ +.+++.
T Consensus 272 ~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~--------------Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~e 331 (464)
T PRK12831 272 PEY-DTPIKVGKKVAVVGGGNVAMDAARTALRL--------------GAEVHIVYRRSEEELPARVEEV-----HHAKEE 331 (464)
T ss_pred ccc-cCcccCCCeEEEECCcHHHHHHHHHHHHc--------------CCEEEEEeecCcccCCCCHHHH-----HHHHHc
Confidence 000 00113567999999999999999999887 468999998664 333322222 346778
Q ss_pred CCEEEeCCeEEEEeC--C-e---EEEEEc------C---------CCeeEEeecceEEEccCCCCchhHHHHHHH-hCc-
Q 007975 292 GIDVKLGSMVVKVTD--K-E---IFTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ- 348 (583)
Q Consensus 292 GV~v~~~~~V~~v~~--~-~---v~~~~~------~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~- 348 (583)
||++++++.++++.. + . +.+... . +|++.++++|+||+|+|..++ . .++.. .++
T Consensus 332 GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~--~-~~~~~~~gl~ 408 (464)
T PRK12831 332 GVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN--P-LISSTTKGLK 408 (464)
T ss_pred CCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC--h-hhhcccCCce
Confidence 999999999999853 2 2 333210 0 244446999999999996554 3 34433 454
Q ss_pred -CCCcceEeCCC-CccCCCCCEEEcCcccc
Q 007975 349 -TNRRALATDEW-LRVEGSDSIYALGDCAT 376 (583)
Q Consensus 349 -~~~g~i~Vd~~-l~~~~~~~VyAiGD~a~ 376 (583)
+.+|.|.||++ ++| +.|+|||+|||+.
T Consensus 409 ~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~ 437 (464)
T PRK12831 409 INKRGCIVADEETGLT-SKEGVFAGGDAVT 437 (464)
T ss_pred ECCCCcEEECCCCCcc-CCCCEEEeCCCCC
Confidence 66789999998 887 8999999999974
No 50
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=265.21 Aligned_cols=274 Identities=23% Similarity=0.402 Sum_probs=223.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCCCCCCC-chhhhccccCCCcccchhHHHHHHhCCCcEEEEEe
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFTP-LLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~~~~~p-~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~ 132 (583)
...+++||||+|++|..|+..++..+ .+++|+-+..++++-+ .++....- ....+.....++++..++++ ++.+
T Consensus 72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~--~~~~~a~r~~e~Yke~gIe~-~~~t 148 (478)
T KOG1336|consen 72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT--VGEGLAKRTPEFYKEKGIEL-ILGT 148 (478)
T ss_pred cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee--ccccccccChhhHhhcCceE-EEcc
Confidence 34679999999999999999998655 4699998888887753 33332211 12234445556788899877 4699
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
.|+.+|..+++|.+.++. .+.|++|+||||+.++++++||.+ ++...+++++++..+-..+.
T Consensus 149 ~v~~~D~~~K~l~~~~Ge----------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~------- 211 (478)
T KOG1336|consen 149 SVVKADLASKTLVLGNGE----------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ------- 211 (478)
T ss_pred eeEEeeccccEEEeCCCc----------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-------
Confidence 999999999999998765 899999999999999999999987 77888899999887655542
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHHh
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSR 290 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~ 290 (583)
....|+++|+|+.|+|+|.+|... ..+||+|++.+.+++. |.+.+.+.+++.+++
T Consensus 212 ----------~~~~vV~vG~G~ig~Evaa~l~~~--------------~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 212 ----------LGGKVVCVGGGFIGMEVAAALVSK--------------AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN 267 (478)
T ss_pred ----------cCceEEEECchHHHHHHHHHHHhc--------------CceEEEEccCccchhhhhhHHHHHHHHHHHHh
Confidence 245899999999999999999874 5799999999999995 889999999999999
Q ss_pred CCCEEEeCCeEEEEeCC---eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHH-hCcCCCcceEeCCCCccCCCC
Q 007975 291 DGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWLRVEGSD 366 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~~~~g~i~Vd~~l~~~~~~ 366 (583)
+||++++++.+.+++++ .+.-..+.+|++ +++|+||+.+| ..|++. +++. ..++.+|.|.||+++|| +.|
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~--l~adlvv~GiG--~~p~t~-~~~~g~~~~~~G~i~V~~~f~t-~~~ 341 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT--LEADLVVVGIG--IKPNTS-FLEKGILLDSKGGIKVDEFFQT-SVP 341 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCE--eccCeEEEeec--cccccc-cccccceecccCCEeehhceee-ccC
Confidence 99999999999999753 454445566876 99999999999 556663 4443 22378999999999999 799
Q ss_pred CEEEcCccccccc
Q 007975 367 SIYALGDCATVNQ 379 (583)
Q Consensus 367 ~VyAiGD~a~~~~ 379 (583)
||||+|||+.++-
T Consensus 342 ~VyAiGDva~fp~ 354 (478)
T KOG1336|consen 342 NVYAIGDVATFPL 354 (478)
T ss_pred Ccccccceeeccc
Confidence 9999999999864
No 51
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=2.9e-30 Score=278.94 Aligned_cols=267 Identities=18% Similarity=0.209 Sum_probs=177.2
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
....++|+|||||++|+++|..|++.|++|+|||+++.++.... +.. +....+.++.....+.+.+.+++ +..+..
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~-~gi-p~~~~~~~~~~~~~~~l~~~gv~--~~~~~~ 212 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR-YGI-PEFRLPKDIVDREVERLLKLGVE--IRTNTE 212 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee-ccC-CCccCCHHHHHHHHHHHHHcCCE--EEeCCE
Confidence 34568999999999999999999999999999999987643211 111 11122335556666777777744 443333
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 213 (583)
. .+.+.+... .+.||+||+|||+. ++.+++||.+.. .+.+. ..+........ ..
T Consensus 213 v-----~~~v~~~~~-----------~~~~d~vvlAtGa~~~~~~~i~G~~~~--gv~~~---~~~l~~~~~~~---~~- 267 (457)
T PRK11749 213 V-----GRDITLDEL-----------RAGYDAVFIGTGAGLPRFLGIPGENLG--GVYSA---VDFLTRVNQAV---AD- 267 (457)
T ss_pred E-----CCccCHHHH-----------HhhCCEEEEccCCCCCCCCCCCCccCC--CcEEH---HHHHHHHhhcc---cc-
Confidence 2 112222211 36799999999996 777888986421 11121 11111111000 00
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~G 292 (583)
.....+++|+|||||++|+|+|..+.++. ..+|+++++.+. .++.... ..+.+++.|
T Consensus 268 ----~~~~~g~~VvViGgG~~g~e~A~~l~~~G-------------~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~G 325 (457)
T PRK11749 268 ----YDLPVGKRVVVIGGGNTAMDAARTAKRLG-------------AESVTIVYRRGREEMPASEE-----EVEHAKEEG 325 (457)
T ss_pred ----ccCCCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHH-----HHHHHHHCC
Confidence 01124679999999999999999998753 138999998764 3444322 246788899
Q ss_pred CEEEeCCeEEEEeCCe-----EEEEEc--------------CCCeeEEeecceEEEccCCCCchhHHHHHH-HhC--cCC
Q 007975 293 IDVKLGSMVVKVTDKE-----IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-QVG--QTN 350 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~-----v~~~~~--------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~-~~~--~~~ 350 (583)
|++++++.++++.++. |++... .+|+..++++|+|||++|..++. .++. ..+ ++.
T Consensus 326 V~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~---~l~~~~~gl~~~~ 402 (457)
T PRK11749 326 VEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP---LILSTTPGLELNR 402 (457)
T ss_pred CEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc---hhhccccCccCCC
Confidence 9999999999997543 555432 12444469999999999976653 3332 233 467
Q ss_pred CcceEeCC-CCccCCCCCEEEcCcccc
Q 007975 351 RRALATDE-WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 351 ~g~i~Vd~-~l~~~~~~~VyAiGD~a~ 376 (583)
+|+|.||+ +++| +.|+|||+|||+.
T Consensus 403 ~g~i~vd~~~~~T-s~~~VfA~GD~~~ 428 (457)
T PRK11749 403 WGTIIADDETGRT-SLPGVFAGGDIVT 428 (457)
T ss_pred CCCEEeCCCCCcc-CCCCEEEeCCcCC
Confidence 89999998 7777 8999999999974
No 52
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.97 E-value=1.3e-29 Score=277.50 Aligned_cols=267 Identities=22% Similarity=0.315 Sum_probs=189.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc----hhhhcc-ccCCCcccchhHHHHHHhCCCcEEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LPSVTC-GTVEARSIVEPVRNIVRKKNVDICFW 130 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~----l~~~~~-g~~~~~~i~~~~~~~~~~~~i~v~~~ 130 (583)
...++|+|||||+||++||.+|++.|++|+||++. ++++.. ++.+.. ......++...+...++++++++. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~-~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM-N 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE-c
Confidence 34689999999999999999999999999999865 333221 111110 112334567778888888886653 4
Q ss_pred EeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCc-ccCCHHHHHHHHHHHHHHHHH
Q 007975 131 EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCN-FLKEVEDAQRIRRNVIESFEK 209 (583)
Q Consensus 131 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~-~~~~~~~a~~l~~~l~~~~~~ 209 (583)
..+|+.++.....+.+.... + ..+.||+||+|||+.++.+++||..++.. .+.... .
T Consensus 286 ~~~V~~I~~~~~~~~V~~~~-----g---~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~---~----------- 343 (517)
T PRK15317 286 LQRASKLEPAAGLIEVELAN-----G---AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCP---H----------- 343 (517)
T ss_pred CCEEEEEEecCCeEEEEECC-----C---CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEee---c-----------
Confidence 67899998875443333211 1 17999999999999999899998643210 000000 0
Q ss_pred cCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHH
Q 007975 210 ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289 (583)
Q Consensus 210 ~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~ 289 (583)
. .....++++|+|||||++|+|+|..|+.+ +.+|+++++.+.+.. .+.+.+.+.
T Consensus 344 -----~-~~~~~~gk~VvVVGgG~~g~e~A~~L~~~--------------~~~Vtlv~~~~~l~~------~~~l~~~l~ 397 (517)
T PRK15317 344 -----C-DGPLFKGKRVAVIGGGNSGVEAAIDLAGI--------------VKHVTVLEFAPELKA------DQVLQDKLR 397 (517)
T ss_pred -----c-CchhcCCCEEEEECCCHHHHHHHHHHHhc--------------CCEEEEEEECccccc------cHHHHHHHh
Confidence 0 00113567999999999999999999876 469999999887643 234556666
Q ss_pred h-CCCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHH-hCcCCCcceEeCCCCcc
Q 007975 290 R-DGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQTNRRALATDEWLRV 362 (583)
Q Consensus 290 ~-~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~~~~g~i~Vd~~l~~ 362 (583)
+ .||++++++.+++++++ .+++.+..+|++.++++|.++|++|..++ + .+++. +.++.+|+|.||+++||
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~--~-~~l~~~v~~~~~g~i~vd~~l~T 474 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPN--T-EWLKGTVELNRRGEIIVDARGAT 474 (517)
T ss_pred cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccC--c-hHHhhheeeCCCCcEEECcCCCC
Confidence 5 59999999999999765 24555444566557999999999996554 3 34333 33467799999999998
Q ss_pred CCCCCEEEcCccccc
Q 007975 363 EGSDSIYALGDCATV 377 (583)
Q Consensus 363 ~~~~~VyAiGD~a~~ 377 (583)
+.|+|||+|||+..
T Consensus 475 -s~p~IyAaGDv~~~ 488 (517)
T PRK15317 475 -SVPGVFAAGDCTTV 488 (517)
T ss_pred -CCCCEEECccccCC
Confidence 89999999999875
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=2.2e-29 Score=284.52 Aligned_cols=262 Identities=19% Similarity=0.196 Sum_probs=175.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||||+||++||..|++.|++|+|+|+++..++.. ....++...+.++.....+.+...++++ ..+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~l--r~~IP~~Rlp~evL~~die~l~~~GVe~--~~gt~V 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVV--KNIIPQFRIPAELIQHDIEFVKAHGVKF--EFGCSP 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcce--eeecccccccHHHHHHHHHHHHHcCCEE--EeCcee
Confidence 457899999999999999999999999999999988766532 1222332223344444445666777554 333222
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
.++ ++.. ....||+||||||+. +..+++||.+++++ ..++.....++.
T Consensus 613 di~-------le~L----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~--saldfL~~~k~~------------ 661 (1019)
T PRK09853 613 DLT-------VEQL----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KALPFLEEYKNK------------ 661 (1019)
T ss_pred EEE-------hhhh----------eeccCCEEEECcCCCCCCCCCCCCccCCce--ehHHHHHHHhhh------------
Confidence 222 2111 156799999999998 45567888654332 122111111100
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCC-ceEEEEecCC-cccCcccHHHHHHHHHHHHhCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDS-VKITLLEAAD-HILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~-~~Vtlv~~~~-~il~~~~~~~~~~~~~~L~~~G 292 (583)
......+++|+|||||++|+|+|..+.+.. + .+|+++++.+ ..+|..++++.+ . .+.|
T Consensus 662 --~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rlg-------------GakeVTLVyRr~~~~MPA~~eEle~----A-leeG 721 (1019)
T PRK09853 662 --GTALKLGKHVVVVGGGNTAMDAARAALRVP-------------GVEKVTVVYRRTKQEMPAWREEYEE----A-LEDG 721 (1019)
T ss_pred --cccccCCCEEEEECCChHHHHHHHHHHhcC-------------CCceEEEEEccCcccccccHHHHHH----H-HHcC
Confidence 001134679999999999999999877652 2 4899999876 456665554432 2 2479
Q ss_pred CEEEeCCeEEEEeC-CeEEEEE--------------cCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceE
Q 007975 293 IDVKLGSMVVKVTD-KEIFTKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALA 355 (583)
Q Consensus 293 V~v~~~~~V~~v~~-~~v~~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~ 355 (583)
|++++++.++++++ +.+++.. ..+|+..++++|+||+|+|..+ ++ .+++..++ +.+|++.
T Consensus 722 Ve~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~P--nt-elle~~GL~ld~~G~I~ 798 (1019)
T PRK09853 722 VEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQV--DT-ELLKANGIPLDKKGWPV 798 (1019)
T ss_pred CEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcC--Ch-hHHHhcCccccCCCCEE
Confidence 99999999999873 3332210 0123345699999999999654 44 45566665 6678999
Q ss_pred eCCCCccCCCCCEEEcCcccc
Q 007975 356 TDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 356 Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
||+++++ +.|+|||+|||+.
T Consensus 799 VDetlqT-s~pgVFAaGD~a~ 818 (1019)
T PRK09853 799 VDANGET-SLTNVYMIGDVQR 818 (1019)
T ss_pred eCCCccc-CCCCEEEEecccc
Confidence 9999998 8999999999974
No 54
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=4e-29 Score=261.19 Aligned_cols=281 Identities=20% Similarity=0.235 Sum_probs=173.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEe-EEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA-ECF 135 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~-~v~ 135 (583)
..++|+|||||++|+++|..|++.|++|+|||+.+..++.... .........+.+...+.++ .+.++ ++..+ .+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~l-~~~~i--~~~~~~~v~ 92 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKEL-EEAGV--VFHTRTKVC 92 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHHH-HhCCe--EEecCcEEe
Confidence 4579999999999999999999999999999998876543211 1111111222233334443 44464 44433 443
Q ss_pred EEec----CCCEEEEecCCCCCCCCCceEEeecCEEEEccCC-CCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHc
Q 007975 136 KIDA----ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKA 210 (583)
Q Consensus 136 ~id~----~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~ 210 (583)
.++. ....+...... .+...+.||+||||||+ .+..+++||.+.... +...+....++...... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v-~~~~~~~~~~~~~~~~~---~ 162 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIVS------LEELVKKYDAVLIATGTWKSRKLGIPGEDLPGV-YSALEYLFRIRAAKLGY---L 162 (352)
T ss_pred eccccccccccccccccCC------HHHHHhhCCEEEEEeCCCCCCcCCCCCccccCc-eeHHHHHHHhhhccccc---c
Confidence 3322 01111000000 00114789999999999 477888998753211 11111111111110000 0
Q ss_pred CCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce-EEEEecCCcccCcccHHHHHHHHHHHH
Q 007975 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHILNMFDKRITAFAEEKFS 289 (583)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~il~~~~~~~~~~~~~~L~ 289 (583)
..... ....+++++|||+|++|+|+|..+... +.+ |+++++.+...... .....+.|+
T Consensus 163 ~~~~~---~~~~g~~vvViG~G~~g~e~A~~l~~~--------------g~~~Vtvi~~~~~~~~~~----~~~~~~~l~ 221 (352)
T PRK12770 163 PWEKV---PPVEGKKVVVVGAGLTAVDAALEAVLL--------------GAEKVYLAYRRTINEAPA----GKYEIERLI 221 (352)
T ss_pred ccccc---cccCCCEEEEECCCHHHHHHHHHHHHc--------------CCCeEEEEeecchhhCCC----CHHHHHHHH
Confidence 00000 012357999999999999999998764 344 99999876432211 234456689
Q ss_pred hCCCEEEeCCeEEEEeCC-eE---EEEEc---------------CCCeeEEeecceEEEccCCCCchhHHHHHHH-hCc-
Q 007975 290 RDGIDVKLGSMVVKVTDK-EI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ- 348 (583)
Q Consensus 290 ~~GV~v~~~~~V~~v~~~-~v---~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~- 348 (583)
++||++++++.+++++++ .+ .+.+. .+|+..++++|.|||++|..+++ .+..+ +++
T Consensus 222 ~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~---~l~~~~~g~~ 298 (352)
T PRK12770 222 ARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP---PFAKECLGIE 298 (352)
T ss_pred HcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc---hhhhcccCce
Confidence 999999999999999753 22 32211 12444469999999999977654 34433 554
Q ss_pred -CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 349 -TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 349 -~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+.+|+|.||+++++ +.|+|||+|||+.
T Consensus 299 ~~~~g~i~vd~~~~t-~~~~vyaiGD~~~ 326 (352)
T PRK12770 299 LNRKGEIVVDEKHMT-SREGVFAAGDVVT 326 (352)
T ss_pred ecCCCcEeeCCCccc-CCCCEEEEccccc
Confidence 56789999999998 8999999999975
No 55
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.97 E-value=2.4e-29 Score=267.38 Aligned_cols=273 Identities=24% Similarity=0.442 Sum_probs=231.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC---CCCeEEEEcCCCCCCCC-CchhhhccccCCCcccchhHHHHHHhCCCcEEEEEe
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAFT-PLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~---~g~~Vtlie~~~~~~~~-p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~ 132 (583)
.+.++||||.|.+|..+...+.. .-++||++-..++..|. .++..+.++..+.+++...-.++++++++++ +...
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L-~~~~ 80 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITL-YTGE 80 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEE-EcCC
Confidence 35799999999999999887763 66899999988887774 7888999998888888888889999999766 3688
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVE-ENCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
.|+.||++++.|+.+.+. .+.||.||+||||.|..+++||.+ ..++.+++++|...+.+. .
T Consensus 81 ~v~~idr~~k~V~t~~g~----------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~-a------- 142 (793)
T COG1251 81 KVIQIDRANKVVTTDAGR----------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC-A------- 142 (793)
T ss_pred eeEEeccCcceEEccCCc----------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHH-H-------
Confidence 999999999999988765 899999999999999999999986 578899999998877554 1
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHHh
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSR 290 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~ 290 (583)
+..++-+|||||.-|.|.|..|.+. +.++++++..+.+|.. +++.....+++.|++
T Consensus 143 ---------r~~~~avVIGGGLLGlEaA~~L~~~--------------Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~ 199 (793)
T COG1251 143 ---------RNKKKAVVIGGGLLGLEAARGLKDL--------------GMEVTVVHIAPTLMERQLDRTAGRLLRRKLED 199 (793)
T ss_pred ---------hccCCcEEEccchhhhHHHHHHHhC--------------CCceEEEeecchHHHHhhhhHHHHHHHHHHHh
Confidence 2334679999999999999999886 6899999999999874 888889999999999
Q ss_pred CCCEEEeCCeEEEEeC-CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccCCCCCEE
Q 007975 291 DGIDVKLGSMVVKVTD-KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVEGSDSIY 369 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~-~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~~~~~Vy 369 (583)
+||+++++....++.+ +.+.....++|+. +++|.|||++|++|+. .+....|+.-+..|+||+++|| +.|+||
T Consensus 200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~--i~ad~VV~a~GIrPn~---ela~~aGlavnrGIvvnd~mqT-sdpdIY 273 (793)
T COG1251 200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTE--IPADLVVMAVGIRPND---ELAKEAGLAVNRGIVVNDYMQT-SDPDIY 273 (793)
T ss_pred hcceeecccchhhhhcCcceeeEeecCCCc--ccceeEEEeccccccc---HhHHhcCcCcCCCeeecccccc-cCCCee
Confidence 9999999998888864 3344444456886 9999999999976654 6777888844447999999999 999999
Q ss_pred EcCccccc
Q 007975 370 ALGDCATV 377 (583)
Q Consensus 370 AiGD~a~~ 377 (583)
|+|+|+..
T Consensus 274 AvGEcae~ 281 (793)
T COG1251 274 AVGECAEH 281 (793)
T ss_pred ehhhHHHh
Confidence 99999986
No 56
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-29 Score=250.54 Aligned_cols=277 Identities=21% Similarity=0.254 Sum_probs=205.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCe-EEEEcCCCCCCCCCchh----hhc--cccCCCcccchhHHHHHHhCCCcEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPLLP----SVT--CGTVEARSIVEPVRNIVRKKNVDICF 129 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~-Vtlie~~~~~~~~p~l~----~~~--~g~~~~~~i~~~~~~~~~~~~i~v~~ 129 (583)
+.++|+|||||||||+||.++++.+.+ ++|+|+.. .++++... .++ .+.....++...++++....+ +++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~--~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG--VEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC--eEE
Confidence 468999999999999999999999999 66666542 23222211 111 111223356666777777776 566
Q ss_pred EEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccC---cccCCHHHHHHHHHHHHHH
Q 007975 130 WEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENC---NFLKEVEDAQRIRRNVIES 206 (583)
Q Consensus 130 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~a~~l~~~l~~~ 206 (583)
+..+|..++.....+.+.... + ++.+++||||||..++.+++||..+.. ..++...|.
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~-------~--~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---------- 139 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDK-------G--TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---------- 139 (305)
T ss_pred EEEEEEEEeecCceEEEEECC-------C--eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc----------
Confidence 778999998876344444332 1 599999999999999999998754221 111111111
Q ss_pred HHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHH
Q 007975 207 FEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEE 286 (583)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~ 286 (583)
..++++|+|||||++++|-|..|..+. .+||+++|.+.+-+ .+.+.+
T Consensus 140 -------------~~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra------~~~~~~ 186 (305)
T COG0492 140 -------------FFKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA------EEILVE 186 (305)
T ss_pred -------------cccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc------CHHHHH
Confidence 235669999999999999999999985 58999999997754 345566
Q ss_pred HHHhC-CCEEEeCCeEEEEeCC---eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCCcceEeCCCCc
Q 007975 287 KFSRD-GIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDEWLR 361 (583)
Q Consensus 287 ~L~~~-GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~~l~ 361 (583)
.|+++ +|++++++.|+++.++ ++++.+.. |+..++++|-++.++| ..|++ .++...+. +++|+|.||+.++
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~-~~~~~~~~~gvf~~iG--~~p~~-~~~~~~~~~~~~g~I~v~~~~~ 262 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVK-GEEKELPVDGVFIAIG--HLPNT-ELLKGLGVLDENGYIVVDEEME 262 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCccceEEEEecC-CceEEEEeceEEEecC--CCCch-HHHhhccccCCCCcEEcCCCcc
Confidence 77766 8999999999999984 67777644 6666899999999999 45555 56666555 7899999999999
Q ss_pred cCCCCCEEEcCcccccccchhhhHHHHHhhhc
Q 007975 362 VEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (583)
Q Consensus 362 ~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~a 393 (583)
| +.|+|||+|||+....+++.+++.++..+|
T Consensus 263 T-svpGifAaGDv~~~~~rqi~ta~~~G~~Aa 293 (305)
T COG0492 263 T-SVPGIFAAGDVADKNGRQIATAAGDGAIAA 293 (305)
T ss_pred c-CCCCEEEeEeeccCcccEEeehhhhHHHHH
Confidence 8 999999999999988778888888877655
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=6.2e-29 Score=283.39 Aligned_cols=271 Identities=21% Similarity=0.237 Sum_probs=175.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
...++|+|||||+||++||..|++.|++|+|||+.+.+++. +.+... ....+.++.....+.+.+.+++ |..+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~-l~~gip-~~rlp~~~~~~~~~~l~~~gv~--~~~~~~v 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV-LKYGIP-EFRLPKKIVDVEIENLKKLGVK--FETDVIV 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-eeecCC-CCCCCHHHHHHHHHHHHHCCCE--EECCCEE
Confidence 45689999999999999999999999999999997655433 112111 1112334444445566777744 4333322
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCC-CCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~-~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
.+.+++++. ....||+||||||+ .|+.+++||.+. ..+.+..+.....+... ... ..
T Consensus 505 -----~~~v~~~~l----------~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~-~~~----~~ 562 (752)
T PRK12778 505 -----GKTITIEEL----------EEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMD-AAS----PD 562 (752)
T ss_pred -----CCcCCHHHH----------hhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhcc-ccc----cc
Confidence 233433322 15679999999999 488899999642 22223333222111000 000 00
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce-EEEEecCCc-ccCcccHHHHHHHHHHHHhCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADH-ILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~G 292 (583)
.......+++|+|||||++|+|+|..+.++. .+ |+++++.+. .+|....++ +.+++.|
T Consensus 563 -~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~G 622 (752)
T PRK12778 563 -SDTPIKFGKKVAVVGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEG 622 (752)
T ss_pred -ccCcccCCCcEEEECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcC
Confidence 0001135789999999999999999998763 44 999998764 344332222 4578889
Q ss_pred CEEEeCCeEEEEeC---Ce---EEEEEc---------------CCCeeEEeecceEEEccCCCCchhHHHHHHHh-Cc--
Q 007975 293 IDVKLGSMVVKVTD---KE---IFTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV-GQ-- 348 (583)
Q Consensus 293 V~v~~~~~V~~v~~---~~---v~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~-~~-- 348 (583)
|++++++.++++.. +. +.+... .+|++.++++|+||+|+|..++. .+.... ++
T Consensus 623 V~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~---~l~~~~~gl~~ 699 (752)
T PRK12778 623 IEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP---LVPSSIPGLEL 699 (752)
T ss_pred CEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc---cccccccCceE
Confidence 99999999999853 22 233210 02344569999999999976554 233332 44
Q ss_pred CCCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 349 TNRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 349 ~~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+.+|+|.||++++| +.|+|||+|||+.
T Consensus 700 ~~~G~i~vd~~~~T-s~~gVfA~GD~~~ 726 (752)
T PRK12778 700 NRKGTIVVDEEMQS-SIPGIYAGGDIVR 726 (752)
T ss_pred CCCCCEEeCCCCCC-CCCCEEEeCCccC
Confidence 66789999999987 8999999999975
No 58
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=3.9e-29 Score=270.70 Aligned_cols=275 Identities=15% Similarity=0.200 Sum_probs=173.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
...++|+|||||+||+++|..|++.|++|+|||+.+..+... .+.. +....+.++.....+.+.+.+++ +..++..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gi-p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLL-RYGI-PDFKLEKEVIDRRIELMEAEGIE--FRTNVEV 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcee-eecC-CcccCCHHHHHHHHHHHHhCCcE--EEeCCEE
Confidence 456799999999999999999999999999999988765321 1111 11112233444555667777754 4434333
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccc-cCcccCCHHHHHHHHHHHHH-HHHHcCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIE-SFEKASL 212 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~-~~~~~~~ 212 (583)
..+.. ... ....||+||+|||+. +..+++||.+. +++ + +..+...... .......
T Consensus 217 ~~~~~-----~~~-----------~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~---~---~~~~l~~~~~~~~~~~~~ 274 (471)
T PRK12810 217 GKDIT-----AEE-----------LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH---F---AMDFLIQNTRRVLGDETE 274 (471)
T ss_pred CCcCC-----HHH-----------HHhhCCEEEEecCCCCCCcCCCCCccCCCcE---E---HHHHHHHHHhhhcccccc
Confidence 22211 110 135799999999998 77889999642 222 1 1111111100 0000000
Q ss_pred CCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcc-cH----H-HHHHHHH
Q 007975 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-DK----R-ITAFAEE 286 (583)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~-~~----~-~~~~~~~ 286 (583)
+ .....+++|+|||||++|+|+|..+.+.. ..+|++++..+...... +. . ......+
T Consensus 275 ~----~~~~~gk~VvVIGgG~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (471)
T PRK12810 275 P----FISAKGKHVVVIGGGDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVS 337 (471)
T ss_pred c----cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHHH
Confidence 0 01135679999999999999998877753 23788776554322111 00 0 0111346
Q ss_pred HHHhCCCEEEeCCeEEEEeC--CeEE---EEE--c-------CCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CC
Q 007975 287 KFSRDGIDVKLGSMVVKVTD--KEIF---TKV--R-------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TN 350 (583)
Q Consensus 287 ~L~~~GV~v~~~~~V~~v~~--~~v~---~~~--~-------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~ 350 (583)
.+++.||++++++.+++|.+ +.++ +.. . .+|+..++++|.||||+|..++. ..+++.+++ +.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~--~~l~~~~gl~~~~ 415 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE--AGLLAQFGVELDE 415 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc--hhhccccCcccCC
Confidence 67888999999999999973 3332 221 1 12444579999999999965543 235556665 66
Q ss_pred CcceEeC-CCCccCCCCCEEEcCcccc
Q 007975 351 RRALATD-EWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 351 ~g~i~Vd-~~l~~~~~~~VyAiGD~a~ 376 (583)
+|.+.|| ++++| +.|+|||+|||+.
T Consensus 416 ~g~i~vd~~~~~T-s~~gVfa~GD~~~ 441 (471)
T PRK12810 416 RGRVAAPDNAYQT-SNPKVFAAGDMRR 441 (471)
T ss_pred CCCEEeCCCcccC-CCCCEEEccccCC
Confidence 7899998 68997 8999999999975
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=1.8e-28 Score=281.61 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=179.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||||||||+||.+|++.|++|||+|+.+..++.. .+. .+....+.++.....+.++..|++ |......
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l-~yG-IP~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~v 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVL-RYG-IPEFRLPNQLIDDVVEKIKLLGGR--FVKNFVV 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceE-Ecc-CCCCcChHHHHHHHHHHHHhhcCe--EEEeEEe
Confidence 347899999999999999999999999999999987766531 222 222223445666666777778854 4333332
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
.+.+++++.. ...||+||||||+. |+.+++||.+ ...+.+..+.....+... ... ....
T Consensus 380 -----G~dit~~~l~----------~~~yDAV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~~~~~~~-~~~-~~~~- 439 (944)
T PRK12779 380 -----GKTATLEDLK----------AAGFWKIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLTRVNLMR-GLD-DDYE- 439 (944)
T ss_pred -----ccEEeHHHhc----------cccCCEEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHHHHHhhc-ccc-cccc-
Confidence 2345444322 45799999999995 8889999954 222233333322111100 000 0000
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhCCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDGI 293 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~GV 293 (583)
.+.....+++|+|||||++|+|+|..+.++ +.+|+++++.+. .+|....++ .+ ..+.||
T Consensus 440 -~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~--------------Ga~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV 499 (944)
T PRK12779 440 -TPLPEVKGKEVFVIGGGNTAMDAARTAKRL--------------GGNVTIVYRRTKSEMPARVEEL----HH-ALEEGI 499 (944)
T ss_pred -ccccccCCCEEEEECCCHHHHHHHHHHHHc--------------CCEEEEEEecCcccccccHHHH----HH-HHHCCC
Confidence 000113578999999999999999999876 568999998764 344333222 22 346799
Q ss_pred EEEeCCeEEEEeCC----eEE---EEE--------------cCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CC
Q 007975 294 DVKLGSMVVKVTDK----EIF---TKV--------------RGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TN 350 (583)
Q Consensus 294 ~v~~~~~V~~v~~~----~v~---~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~ 350 (583)
++++++.++++.++ .++ +.. ..+|++.++++|.||+|+|..+++.. .....++ +.
T Consensus 500 ~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l--~~~~~gle~~~ 577 (944)
T PRK12779 500 NLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM--KDAEPGLKTNK 577 (944)
T ss_pred EEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh--hhcccCceECC
Confidence 99999999998532 221 110 01355557999999999997665422 1222344 66
Q ss_pred CcceEeCC-CCccCCCCCEEEcCccccc
Q 007975 351 RRALATDE-WLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 351 ~g~i~Vd~-~l~~~~~~~VyAiGD~a~~ 377 (583)
+|.|.||+ +++| +.|+|||+|||+..
T Consensus 578 ~G~I~vd~~~~~T-s~pgVFAaGD~~~G 604 (944)
T PRK12779 578 WGTIEVEKGSQRT-SIKGVYSGGDAARG 604 (944)
T ss_pred CCCEEECCCCCcc-CCCCEEEEEcCCCC
Confidence 79999997 4676 89999999999863
No 60
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=5.4e-29 Score=245.09 Aligned_cols=271 Identities=18% Similarity=0.294 Sum_probs=208.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcc---------------c-------------cCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTC---------------G-------------TVE 108 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~---------------g-------------~~~ 108 (583)
..++|+|||+||+|..||...+..|++.+.||++...+++.+--.+.+ . .++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 468999999999999999999999999999999988776543211111 1 000
Q ss_pred C-----------cccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 109 A-----------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 109 ~-----------~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
. .++...+..++++.+ |.++.+....++|..-++.-.++ +.+.+...++||||||.-
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknk--V~~~kG~gsf~~p~~V~v~k~dg--------~~~ii~aKnIiiATGSeV-- 185 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNK--VTYVKGFGSFLDPNKVSVKKIDG--------EDQIIKAKNIIIATGSEV-- 185 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcC--eEEEeeeEeecCCceEEEeccCC--------CceEEeeeeEEEEeCCcc--
Confidence 0 112333556667666 77889999999887444433332 235899999999999963
Q ss_pred CCCCCcc--ccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcC
Q 007975 178 FNTPGVE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYP 255 (583)
Q Consensus 178 ~~ipG~~--~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p 255 (583)
.++||+. +.. +-+.+.|.. +... +++++|||+|.+|+|++.-+.++
T Consensus 186 ~~~PGI~IDekk--IVSStgALs-------------L~~v-------Pk~~~viG~G~IGLE~gsV~~rL---------- 233 (506)
T KOG1335|consen 186 TPFPGITIDEKK--IVSSTGALS-------------LKEV-------PKKLTVIGAGYIGLEMGSVWSRL---------- 233 (506)
T ss_pred CCCCCeEecCce--EEecCCccc-------------hhhC-------cceEEEEcCceeeeehhhHHHhc----------
Confidence 2345653 221 111222222 2222 34999999999999999999887
Q ss_pred CCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--C-e--EEEEEcCCCeeEEeecceEEEc
Q 007975 256 KVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--K-E--IFTKVRGNGETSSMPYGMVVWS 330 (583)
Q Consensus 256 ~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~-~--v~~~~~~~G~~~~i~~D~vI~a 330 (583)
+.+||+||..+.+.+.+|.++++.+++.|+++|++++++++|..++. + . +++.+..+|++.+++||.++++
T Consensus 234 ----GseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 234 ----GSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred ----CCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 57999999999999999999999999999999999999999999974 3 2 5666667788888999999999
Q ss_pred cCCCCchhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCcccccc
Q 007975 331 TGIAPHAIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (583)
Q Consensus 331 ~G~~~~p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~~ 378 (583)
+| +.|.++.| ++++|+ |.+|++.||..+++ .+|+||+||||...|
T Consensus 310 iG--RrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~gp 357 (506)
T KOG1335|consen 310 IG--RRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLGP 357 (506)
T ss_pred cc--CcccccCCChhhcccccccccceeccccccc-cCCceEEecccCCcc
Confidence 99 78888777 677887 77899999999999 899999999998764
No 61
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.3e-28 Score=237.79 Aligned_cols=270 Identities=20% Similarity=0.277 Sum_probs=200.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccc---------------------------cCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCG---------------------------TVE 108 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g---------------------------~~~ 108 (583)
....+.+|||||.+|+++|++.+..|.++.|+|..-..++++....+.+. ..+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 34689999999999999999999999999999966344443321111110 000
Q ss_pred -------CcccchhHHHHHHhC--CCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 109 -------ARSIVEPVRNIVRKK--NVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 109 -------~~~i~~~~~~~~~~~--~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
.+.....+..++++. +-.+.++.++...+++.+-.|...++. ...+...+++||+|.+|..|+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~--------~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGT--------KIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCe--------eEEEecceEEEEeCCccCCCC
Confidence 011222222222221 124778999999998876666665542 235888999999999999999
Q ss_pred CCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCC
Q 007975 180 TPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKD 259 (583)
Q Consensus 180 ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~ 259 (583)
|||.+ +.... +.+. +++ ..+++++|||+|++++|+|+-++.+
T Consensus 170 IpG~E-~gidS---Dgff-------------~Le-------e~Pkr~vvvGaGYIavE~Agi~~gL-------------- 211 (478)
T KOG0405|consen 170 IPGAE-LGIDS---DGFF-------------DLE-------EQPKRVVVVGAGYIAVEFAGIFAGL-------------- 211 (478)
T ss_pred CCchh-hcccc---cccc-------------chh-------hcCceEEEEccceEEEEhhhHHhhc--------------
Confidence 99973 32211 1111 111 2445999999999999999999987
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--Ce-EEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+++++|+-|.+.+|..||+.+++.+.+.|+.+||+++.++.++++.. ++ ..+.. ..|+. ..+|+++||+| +.
T Consensus 212 gsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~-~~~~i--~~vd~llwAiG--R~ 286 (478)
T KOG0405|consen 212 GSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVIT-SHGTI--EDVDTLLWAIG--RK 286 (478)
T ss_pred CCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEE-ecccc--ccccEEEEEec--CC
Confidence 57999999999999999999999999999999999999999999853 23 22222 33542 45999999999 77
Q ss_pred hhHHHH-HHHhCc--CCCcceEeCCCCccCCCCCEEEcCccccc
Q 007975 337 AIIKDF-MKQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 337 p~~~~l-~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
|+++.| ++.+|+ +.+|.|.||++.+| +.|+||++||++.-
T Consensus 287 Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk 329 (478)
T KOG0405|consen 287 PNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGK 329 (478)
T ss_pred CCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCc
Confidence 888777 777887 78899999999999 99999999999863
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=4.4e-28 Score=271.27 Aligned_cols=263 Identities=18% Similarity=0.201 Sum_probs=171.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||||++|+++|..|++.|++|+|||+++..++.. ....+....+.++.....+.+.+.|+++ ....+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l--~~gip~~~~~~~~~~~~~~~l~~~Gv~i--~~~~~v 266 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM--RYGIPRFRLPESVIDADIAPLRAMGAEF--RFNTVF 266 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee--eecCCCCCCCHHHHHHHHHHHHHcCCEE--EeCCcc
Confidence 456899999999999999999999999999999998765432 1111222223344444455667777544 333332
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC-CCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
.++ +.+... ...||+||+|||+.+ ..+++||.+.. .+.+ +..+.+.+. ..
T Consensus 267 ~~d-----v~~~~~-----------~~~~DaVilAtGa~~~~~~~ipG~~~~--gv~~---~~~~l~~~~----~~---- 317 (652)
T PRK12814 267 GRD-----ITLEEL-----------QKEFDAVLLAVGAQKASKMGIPGEELP--GVIS---GIDFLRNVA----LG---- 317 (652)
T ss_pred cCc-----cCHHHH-----------HhhcCEEEEEcCCCCCCCCCCCCcCcC--CcEe---HHHHHHHhh----cC----
Confidence 222 222111 235999999999985 56788986421 1111 111111110 00
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhCCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDGI 293 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~GV 293 (583)
.....+++|+|||||++|+|+|..+.++. ..+|+++++.++ .+|..+.++. + ..+.||
T Consensus 318 ---~~~~~gk~VvVIGgG~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei~----~-a~~eGV 376 (652)
T PRK12814 318 ---TALHPGKKVVVIGGGNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEIE----E-ALAEGV 376 (652)
T ss_pred ---CcccCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHHH----H-HHHcCC
Confidence 01135679999999999999999888763 147999998875 5665544432 2 235799
Q ss_pred EEEeCCeEEEEeC--CeEEEE-----Ec------------CCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCc
Q 007975 294 DVKLGSMVVKVTD--KEIFTK-----VR------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRR 352 (583)
Q Consensus 294 ~v~~~~~V~~v~~--~~v~~~-----~~------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g 352 (583)
++++++.++++.+ +.+.+. .. .+|++.++++|.|||++|..++. .++...++ +.+|
T Consensus 377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~---~ll~~~gl~~~~~G 453 (652)
T PRK12814 377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDP---PIAEAAGIGTSRNG 453 (652)
T ss_pred cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCc---ccccccCccccCCC
Confidence 9999999998863 333221 10 12444569999999999965543 34455555 5678
Q ss_pred ceEeCC-CCccCCCCCEEEcCcccc
Q 007975 353 ALATDE-WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 353 ~i~Vd~-~l~~~~~~~VyAiGD~a~ 376 (583)
+|.||+ +++| +.|+|||+|||+.
T Consensus 454 ~I~vd~~~~~T-s~pgVfA~GDv~~ 477 (652)
T PRK12814 454 TVKVDPETLQT-SVAGVFAGGDCVT 477 (652)
T ss_pred cEeeCCCCCcC-CCCCEEEcCCcCC
Confidence 999998 4666 8999999999974
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=273.94 Aligned_cols=273 Identities=16% Similarity=0.135 Sum_probs=174.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
+.++|+|||||||||+||.+|++.|++|+|+|+.+..++. +.+. .+....+.++.....+.+.+.|++ +..+.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~-l~~g-ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYG-IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce-eecc-CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC
Confidence 4689999999999999999999999999999998776542 1111 222223445666667778888854 44443332
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 215 (583)
+.+++.... ....||+||||||+. |+.+++||.+. ..+.+..+.....+. ......+..
T Consensus 505 -----~~~~~~~l~---------~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~----~~~~~~~~~ 564 (1006)
T PRK12775 505 -----KTFTVPQLM---------NDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNL----MGGDKFPFL 564 (1006)
T ss_pred -----CccCHHHHh---------hccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHh----cCccccccc
Confidence 223222110 034699999999995 88899999641 112222222221110 000000000
Q ss_pred CHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-cCcccHHHHHHHHHHHHhCCCE
Q 007975 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDGID 294 (583)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-l~~~~~~~~~~~~~~L~~~GV~ 294 (583)
......+++|+|||||++|+|+|..+.++.. ..|+++++.... ++....+ .+.+++.||+
T Consensus 565 -~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~ 625 (1006)
T PRK12775 565 -DTPISLGKSVVVIGAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGID 625 (1006)
T ss_pred -cCCccCCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCE
Confidence 0011357899999999999999988887632 358888865432 3322211 2457788999
Q ss_pred EEeCCeEEEEeC---Ce---EEEEEc--------------CCCeeEEeecceEEEccCCCCchhHHHHHHH-hC--cCCC
Q 007975 295 VKLGSMVVKVTD---KE---IFTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VG--QTNR 351 (583)
Q Consensus 295 v~~~~~V~~v~~---~~---v~~~~~--------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~--~~~~ 351 (583)
+++++.++++.. +. +++... .+|+..++++|+||+|+|..++. .++.. .+ ++.+
T Consensus 626 ~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~---~~~~~~~gl~l~~~ 702 (1006)
T PRK12775 626 FFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP---IITQSTPGLALNKW 702 (1006)
T ss_pred EEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh---hhhhccCCcccCCC
Confidence 999999999852 22 333211 12344469999999999976553 23222 23 3677
Q ss_pred cceEeCC-----CCccCCCCCEEEcCcccc
Q 007975 352 RALATDE-----WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 352 g~i~Vd~-----~l~~~~~~~VyAiGD~a~ 376 (583)
|.|.||+ +++| +.|+|||+|||+.
T Consensus 703 G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~ 731 (1006)
T PRK12775 703 GNIAADDGKLESTQST-NLPGVFAGGDIVT 731 (1006)
T ss_pred CcEEeCCCccccCcCC-CCCCEEEecCcCC
Confidence 8999996 6777 8999999999975
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=6e-27 Score=252.82 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=174.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
+.++|+|||||++|+++|..|++.|++|+|+|+.+..++.. .+.. +....+.++.....+++.+.|+++. ++.++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l-~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~-~~~~v~- 215 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLL-TFGI-PSFKLDKAVLSRRREIFTAMGIEFH-LNCEVG- 215 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eecC-ccccCCHHHHHHHHHHHHHCCCEEE-CCCEeC-
Confidence 56899999999999999999999999999999998765432 1111 1212233455556677788886553 233331
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC-CCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNL 215 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~ 215 (583)
+.+.+.+. ...||+||+|||+.+ ..+++||.+.. .+.+..+......+.. +........
T Consensus 216 -----~~~~~~~~-----------~~~~D~vilAtGa~~~~~~~i~g~~~~--gV~~a~~~l~~~~~~~--~~~~~~~~~ 275 (467)
T TIGR01318 216 -----RDISLDDL-----------LEDYDAVFLGVGTYRSMRGGLPGEDAP--GVLQALPFLIANTRQL--MGLPESPEE 275 (467)
T ss_pred -----CccCHHHH-----------HhcCCEEEEEeCCCCCCcCCCCCcCCC--CcEEHHHHHHHHHHHh--cCCCccccc
Confidence 11221110 347999999999986 45688986521 1112111111000000 000000000
Q ss_pred CHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhCCCE
Q 007975 216 SDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDGID 294 (583)
Q Consensus 216 ~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~GV~ 294 (583)
+ .....+++++|||+|++|+|+|..+.++.. .+||++++.+. .++..+.++ +.+++.||+
T Consensus 276 ~-~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~ 336 (467)
T TIGR01318 276 P-LIDVEGKRVVVLGGGDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVE 336 (467)
T ss_pred c-ccccCCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCE
Confidence 0 001246799999999999999998877631 37999998775 355544333 456788999
Q ss_pred EEeCCeEEEEeC---CeE---EEEEc---------------CCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCC
Q 007975 295 VKLGSMVVKVTD---KEI---FTKVR---------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNR 351 (583)
Q Consensus 295 v~~~~~V~~v~~---~~v---~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~ 351 (583)
+++++.++++.. +.+ ++... .+|++.++++|.|||++|..++. ..+++..++ +.+
T Consensus 337 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~--~~~~~~~gl~~~~~ 414 (467)
T TIGR01318 337 FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA--MPWLAGHGITLDSW 414 (467)
T ss_pred EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc--cccccccCccCCCC
Confidence 999999999953 223 33211 02344579999999999976652 124444454 667
Q ss_pred cceEeC----CCCccCCCCCEEEcCcccc
Q 007975 352 RALATD----EWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 352 g~i~Vd----~~l~~~~~~~VyAiGD~a~ 376 (583)
|+|.|| .+++| +.|+|||+|||+.
T Consensus 415 g~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 415 GRIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred CCEEeCCccccCccC-CCCCEEEECCcCC
Confidence 899999 57887 8999999999975
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=5.1e-27 Score=263.75 Aligned_cols=274 Identities=17% Similarity=0.204 Sum_probs=172.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||||+|||++|..|++.|++|+|+|+.+..++.. .+.. ++...+.++.....+.+.+.|++++ .+..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l-~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~-~~~~v- 400 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLL-TFGI-PAFKLDKSLLARRREIFSAMGIEFE-LNCEV- 400 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCcee-eecC-CCccCCHHHHHHHHHHHHHCCeEEE-CCCEe-
Confidence 356899999999999999999999999999999987765432 1111 2222233444445566777774432 22222
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccc-cCcccCCHHHHHHHHHHHHHHHHHcCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLP 213 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 213 (583)
.. .+.++.. ...||+|++|+|+. +..+++||.+. +++ +..+. +.......+......
T Consensus 401 ~~-----~i~~~~~-----------~~~~DavilAtGa~~~~~l~i~g~~~~Gv~---~a~~~--l~~~~~~~~~~~~~~ 459 (654)
T PRK12769 401 GK-----DISLESL-----------LEDYDAVFVGVGTYRSMKAGLPNEDAPGVY---DALPF--LIANTKQVMGLEELP 459 (654)
T ss_pred CC-----cCCHHHH-----------HhcCCEEEEeCCCCCCCCCCCCCCCCCCeE---EhHHH--HHHHHhhhccCcccc
Confidence 11 1111110 24699999999997 44678888642 211 11111 001110100000000
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-cCcccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-l~~~~~~~~~~~~~~L~~~G 292 (583)
.. +.....+++|+|||||++|+|+|..+.++.. .+|+++++.+.. +|..+.. .+.+++.|
T Consensus 460 ~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~G 520 (654)
T PRK12769 460 EE-PFINTAGLNVVVLGGGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEG 520 (654)
T ss_pred cc-ccccCCCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcC
Confidence 00 0001356799999999999999998877531 479999987654 5554433 35678899
Q ss_pred CEEEeCCeEEEEeC---CeE---EEEEc------C---------CCeeEEeecceEEEccCCCCchhHHHHHHHhCc--C
Q 007975 293 IDVKLGSMVVKVTD---KEI---FTKVR------G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (583)
Q Consensus 293 V~v~~~~~V~~v~~---~~v---~~~~~------~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~ 349 (583)
|++++++.++++.. +.+ ++... . +|++.++++|+||+|+|..++.. .+++.+++ +
T Consensus 521 v~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~--~~~~~~gl~~~ 598 (654)
T PRK12769 521 ANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGM--PWLESHGVTVD 598 (654)
T ss_pred CeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcc--ccccccCCcCC
Confidence 99999999999852 233 33211 1 24445799999999999765531 34455555 6
Q ss_pred CCcceEeCC----CCccCCCCCEEEcCcccc
Q 007975 350 NRRALATDE----WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 350 ~~g~i~Vd~----~l~~~~~~~VyAiGD~a~ 376 (583)
.+|.|.||+ +++| +.|+|||+|||+.
T Consensus 599 ~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~ 628 (654)
T PRK12769 599 KWGRIIADVESQYRYQT-SNPKIFAGGDAVR 628 (654)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence 788999986 4787 8999999999975
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.95 E-value=5e-26 Score=246.61 Aligned_cols=277 Identities=17% Similarity=0.223 Sum_probs=166.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||||++|+++|..|++.|++|+|+|+.+..++.. .+.. +....+.++.....+.+...|+++ ..+....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l-~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~--~~~~~v~ 217 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL-MYGI-PNMKLDKAIVDRRIDLLSAEGIDF--VTNTEIG 217 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eccC-CCccCCHHHHHHHHHHHHhCCCEE--ECCCEeC
Confidence 45799999999999999999999999999999988654321 1111 111112234444446667777544 3333222
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccc-cCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
.+.. .+ .....||+||+|||+. |..+++||.+. .++ +.-+...-...+. .......
T Consensus 218 ~~~~-----~~-----------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~---~~~~~l~~~~~~~---~~~~~~~ 275 (485)
T TIGR01317 218 VDIS-----AD-----------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIH---YAMEFLPSATKAL---LGKDFKD 275 (485)
T ss_pred CccC-----HH-----------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcE---eHHHHHHHHhhhh---ccccccc
Confidence 2111 10 0146799999999998 88889999642 222 1111111001100 0000000
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcc---------cHH--HHHH
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF---------DKR--ITAF 283 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~---------~~~--~~~~ 283 (583)
++ .....+++|+|||||++|+|+|..+.++. ..+|++++..++.+... +.. ....
T Consensus 276 ~~-~~~~~gk~VvViGgG~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a 341 (485)
T TIGR01317 276 II-FIKAKGKKVVVIGGGDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYA 341 (485)
T ss_pred cc-cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHHH
Confidence 00 01135689999999999999988877653 35899999887654321 111 2222
Q ss_pred HHHHHHhCCCEE-EeCCeEEEEeC---CeEE---EEE-----cCC---------CeeEEeecceEEEccCCCCchhHHHH
Q 007975 284 AEEKFSRDGIDV-KLGSMVVKVTD---KEIF---TKV-----RGN---------GETSSMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 284 ~~~~L~~~GV~v-~~~~~V~~v~~---~~v~---~~~-----~~~---------G~~~~i~~D~vI~a~G~~~~p~~~~l 342 (583)
.++..+..||++ ++++.+.++.+ +.++ +.. ..+ |+..++++|+|||++|..+ |+. .+
T Consensus 342 ~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~-p~~-~~ 419 (485)
T TIGR01317 342 HEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVG-PEQ-IL 419 (485)
T ss_pred HHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCC-Ccc-cc
Confidence 333344467754 46777787753 2332 210 012 3344699999999999642 333 35
Q ss_pred HHHhCc--CCCcceEe-CCCCccCCCCCEEEcCcccc
Q 007975 343 MKQVGQ--TNRRALAT-DEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 343 ~~~~~~--~~~g~i~V-d~~l~~~~~~~VyAiGD~a~ 376 (583)
+..+++ +.+|++.+ |++++| +.|+|||+|||+.
T Consensus 420 ~~~~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~ 455 (485)
T TIGR01317 420 LDDFGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRR 455 (485)
T ss_pred ccccCcccCCCCCEEecCCCceE-CCCCEEEeeccCC
Confidence 555665 56788855 567887 8999999999975
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=5.9e-26 Score=253.60 Aligned_cols=274 Identities=18% Similarity=0.186 Sum_probs=168.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||+|++|+++|..|++.|++|+|+|+.+..++... +.. .....+.++.....+.+++.++++. ++.+|
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-~~i-~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~v- 356 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-YGI-PSYRLPDEALDKDIAFIEALGVKIH-LNTRV- 356 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-ecC-CcccCCHHHHHHHHHHHHHCCcEEE-CCCEe-
Confidence 4568999999999999999999999999999999887654321 111 1111223344444566777775442 23333
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPN 214 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~ 214 (583)
..+ +..+. ....||+||+|||+. ++.+++||.+... .+...+....+. ..+....
T Consensus 357 ~~~-----~~~~~-----------~~~~yD~vilAtGa~~~r~l~i~G~~~~g-v~~a~~~l~~~~----~~~~~~~--- 412 (604)
T PRK13984 357 GKD-----IPLEE-----------LREKHDAVFLSTGFTLGRSTRIPGTDHPD-VIQALPLLREIR----DYLRGEG--- 412 (604)
T ss_pred CCc-----CCHHH-----------HHhcCCEEEEEcCcCCCccCCCCCcCCcC-eEeHHHHHHHHH----hhhccCC---
Confidence 111 11111 145799999999997 6788999974221 122222222222 2111100
Q ss_pred CCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEec--CCcccCcccHHHHHHHHHHHHhCC
Q 007975 215 LSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEA--ADHILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 215 ~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~--~~~il~~~~~~~~~~~~~~L~~~G 292 (583)
.....+++|+|||||++|+|+|..+.++... .+ ...+|+++.. ....++....++ .+ +.+.|
T Consensus 413 ---~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~G 476 (604)
T PRK13984 413 ---PKPKIPRSLVVIGGGNVAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEEI----EE-GLEEG 476 (604)
T ss_pred ---CcCCCCCcEEEECCchHHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHHH----HH-HHHcC
Confidence 0012357999999999999999999875310 00 1246777643 222344333222 22 34679
Q ss_pred CEEEeCCeEEEEeC--CeE---EEEEc-----C---------CCeeEEeecceEEEccCCCCchhHHHHHHHh--Cc-CC
Q 007975 293 IDVKLGSMVVKVTD--KEI---FTKVR-----G---------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQV--GQ-TN 350 (583)
Q Consensus 293 V~v~~~~~V~~v~~--~~v---~~~~~-----~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~--~~-~~ 350 (583)
|++++++.++++.. +.+ ++... . +|+..++++|.||||+|..++ +..+...+ ++ ..
T Consensus 477 V~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~--~~~l~~~~~~~l~~~ 554 (604)
T PRK13984 477 VVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD--YSYLPEELKSKLEFV 554 (604)
T ss_pred CEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC--hhhhhhhhccCcccc
Confidence 99999998888853 232 22210 1 133446999999999996544 33333333 23 25
Q ss_pred CcceEeCCCCccCCCCCEEEcCcccc
Q 007975 351 RRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 351 ~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+|+|.||+++|| +.|+|||+|||+.
T Consensus 555 ~G~i~vd~~~~T-s~~gVfAaGD~~~ 579 (604)
T PRK13984 555 RGRILTNEYGQT-SIPWLFAGGDIVH 579 (604)
T ss_pred CCeEEeCCCCcc-CCCCEEEecCcCC
Confidence 788999999998 8999999999985
No 68
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-26 Score=220.97 Aligned_cols=272 Identities=23% Similarity=0.364 Sum_probs=185.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEc---CCCC---C--CCCC---------chhhhc-c----------cc-
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVIS---PRNY---F--AFTP---------LLPSVT-C----------GT- 106 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie---~~~~---~--~~~p---------~l~~~~-~----------g~- 106 (583)
...++.+|||||.+||+||+..+..|.+|.++| +.+. + +++. +.++.. . |.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 446899999999999999999999999999998 2221 0 1110 111110 0 00
Q ss_pred CCCcccchh-------HHHHHHhCC--C-------cEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEc
Q 007975 107 VEARSIVEP-------VRNIVRKKN--V-------DICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (583)
Q Consensus 107 ~~~~~i~~~-------~~~~~~~~~--i-------~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViA 170 (583)
.+...+... .++.++..+ - .+.++++-.+.+|+. ++...... ++++.+.++.+|||
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h--~I~at~~~------gk~~~~ta~~fvIa 168 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH--KIKATNKK------GKERFLTAENFVIA 168 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc--eEEEecCC------CceEEeecceEEEE
Confidence 111122222 222222221 0 233444444445443 33333222 23568999999999
Q ss_pred cCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhH
Q 007975 171 MGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDL 250 (583)
Q Consensus 171 tG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~ 250 (583)
||.+|++|+|||..|+..+..++ | +++..| -+-+|||+|+++.|+|+.|+.+
T Consensus 169 tG~RPrYp~IpG~~Ey~ITSDDl-------------F---sl~~~P-------GkTLvVGa~YVaLECAgFL~gf----- 220 (503)
T KOG4716|consen 169 TGLRPRYPDIPGAKEYGITSDDL-------------F---SLPYEP-------GKTLVVGAGYVALECAGFLKGF----- 220 (503)
T ss_pred ecCCCCCCCCCCceeeeeccccc-------------c---cccCCC-------CceEEEccceeeeehhhhHhhc-----
Confidence 99999999999988876643221 1 122222 2778999999999999999987
Q ss_pred hhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe---CCe--EEEEEcCCCeeEEeecc
Q 007975 251 FKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKE--IFTKVRGNGETSSMPYG 325 (583)
Q Consensus 251 ~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~--v~~~~~~~G~~~~i~~D 325 (583)
+.+||+..|+ -+|..||.++.+.+.++++++||++...+.+..|+ .+. |....+.+++.-+-++|
T Consensus 221 ---------g~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~yd 290 (503)
T KOG4716|consen 221 ---------GYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYD 290 (503)
T ss_pred ---------CCCcEEEEEE-eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhh
Confidence 5788888775 47789999999999999999999999887666664 444 33344444554456799
Q ss_pred eEEEccCCCCchhHHHH-HHHhCc--C-CCcceEeCCCCccCCCCCEEEcCcccc
Q 007975 326 MVVWSTGIAPHAIIKDF-MKQVGQ--T-NRRALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 326 ~vI~a~G~~~~p~~~~l-~~~~~~--~-~~g~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
+|+||+| ..++++++ ++.+|+ + ..|.|+||+.-++ +.|+|||+||+..
T Consensus 291 TVl~AiG--R~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~ 342 (503)
T KOG4716|consen 291 TVLWAIG--RKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE 342 (503)
T ss_pred hhhhhhc--cccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec
Confidence 9999999 67777776 556666 2 4578999998888 8999999999964
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=9.2e-26 Score=252.52 Aligned_cols=274 Identities=15% Similarity=0.197 Sum_probs=173.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.+.++|+|||||++|+++|..|++.|++|+|+|+.+..++. +.+......+ +.++.....+++...|++++ ++.++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~-l~~gip~~~l-~~~~~~~~~~~~~~~Gv~~~-~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKL-DKTVLSQRREIFTAMGIDFH-LNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe-eeccCCcccC-CHHHHHHHHHHHHHCCeEEE-cCCccC
Confidence 35789999999999999999999999999999999876543 2222222222 23444445567778885543 233221
Q ss_pred EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHH-HHHHHcCCC
Q 007975 136 KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVI-ESFEKASLP 213 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~-~~~~~~~~~ 213 (583)
+.+.+.. ....||+||+|||+. +..+++||.+... +.+ +..+..... +.+......
T Consensus 385 ------~~~~~~~-----------l~~~~DaV~latGa~~~~~~~i~g~~~~g--v~~---a~~~l~~~~~~~~~~~~~~ 442 (639)
T PRK12809 385 ------RDITFSD-----------LTSEYDAVFIGVGTYGMMRADLPHEDAPG--VIQ---ALPFLTAHTRQLMGLPESE 442 (639)
T ss_pred ------CcCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCccCC--cEe---HHHHHHHHHHhhccCcccc
Confidence 1122211 135699999999997 4457788864211 111 111111110 000000000
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-cCcccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-LNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-l~~~~~~~~~~~~~~L~~~G 292 (583)
.. +.....+++|+|||+|++++|+|..+.++.. .+|+++++.+.. ++....++ ..+++.|
T Consensus 443 ~~-~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eG 503 (639)
T PRK12809 443 EY-PLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEV-----VNAREEG 503 (639)
T ss_pred cc-ccccCCCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHH-----HHHHHcC
Confidence 00 0012356899999999999999988776531 479999987655 55544433 2357789
Q ss_pred CEEEeCCeEEEEeC---CeEE---EEEcC---------------CCeeEEeecceEEEccCCCCchhHHHHHHHhCc--C
Q 007975 293 IDVKLGSMVVKVTD---KEIF---TKVRG---------------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--T 349 (583)
Q Consensus 293 V~v~~~~~V~~v~~---~~v~---~~~~~---------------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~ 349 (583)
|++++++.+++|.. +.|+ +.... .|+++++++|+||+|+|..++.. .+++.+++ +
T Consensus 504 v~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~--~~~~~~gl~~~ 581 (639)
T PRK12809 504 VEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAM--PWLQGSGIKLD 581 (639)
T ss_pred CeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcc--ccccccCcccC
Confidence 99999999999962 3332 21110 24455799999999999665421 24455555 6
Q ss_pred CCcceEeCC----CCccCCCCCEEEcCcccc
Q 007975 350 NRRALATDE----WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 350 ~~g~i~Vd~----~l~~~~~~~VyAiGD~a~ 376 (583)
.+|.|.||+ +++| +.|+|||+|||+.
T Consensus 582 ~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 582 KWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 678999986 3787 8999999999975
No 70
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=4e-24 Score=228.16 Aligned_cols=268 Identities=28% Similarity=0.353 Sum_probs=207.0
Q ss_pred EEEECCcHHHHHHHHhcCC--CCCeEEEEcCCC--CCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 61 VVVLGTGWAGTSFLKNLNN--PSYDVQVISPRN--YFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 61 VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~--~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
+||||+|++|+++|..|.+ .+.+|+++..++ .+..+++.+.+..+......+..... .....++.+ ....+|+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDV-RTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEE-eeCCEEEE
Confidence 5899999999999998774 556777666654 44445666666666655554444434 223455554 45788999
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 216 (583)
+|++++.+.+.++ ++.||+||+|||+.+..++ .......+.++..+++..++.....
T Consensus 79 id~~~~~v~~~~g-----------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------- 135 (415)
T COG0446 79 IDPENKVVLLDDG-----------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP----------- 135 (415)
T ss_pred ecCCCCEEEECCC-----------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-----------
Confidence 9999999998754 6899999999999998876 2223556788888988888776431
Q ss_pred HHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCccc-HHHHHHHHHHHHhCCCEE
Q 007975 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD-KRITAFAEEKFSRDGIDV 295 (583)
Q Consensus 217 ~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~-~~~~~~~~~~L~~~GV~v 295 (583)
.++++|||+|+.|+|+|..+... +++|++++..+++++.+. +.+.+.+.+.|+++||++
T Consensus 136 ------~~~v~vvG~G~~gle~A~~~~~~--------------G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 136 ------PKDVVVVGAGPIGLEAAEAAAKR--------------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVEL 195 (415)
T ss_pred ------cCeEEEECCcHHHHHHHHHHHHc--------------CCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEE
Confidence 35999999999999999999885 689999999999999877 899999999999999999
Q ss_pred EeCCeEEEEeCCe--EEE--EEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhC--c-CCCcceEeCCCCccCCCCCE
Q 007975 296 KLGSMVVKVTDKE--IFT--KVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG--Q-TNRRALATDEWLRVEGSDSI 368 (583)
Q Consensus 296 ~~~~~V~~v~~~~--v~~--~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~--~-~~~g~i~Vd~~l~~~~~~~V 368 (583)
++++.+.+|+.+. +.. ....+++. +++|.+++++|.+++. .+....+ . ..+|++.||+++++...++|
T Consensus 196 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g~~p~~---~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v 270 (415)
T COG0446 196 LLGTKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPGERPNV---VLANDALPGLALAGGAVLVDERGGTSKDPDV 270 (415)
T ss_pred EeCCceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeecccccH---HHHhhCccceeccCCCEEEccccccCCCCCE
Confidence 9999999998643 111 12233554 9999999999976653 3444443 4 56778999999998338999
Q ss_pred EEcCcccccc
Q 007975 369 YALGDCATVN 378 (583)
Q Consensus 369 yAiGD~a~~~ 378 (583)
||+|||+..+
T Consensus 271 ~a~GD~~~~~ 280 (415)
T COG0446 271 YAAGDVAEIP 280 (415)
T ss_pred EeccceEeee
Confidence 9999999874
No 71
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6e-25 Score=201.82 Aligned_cols=287 Identities=16% Similarity=0.210 Sum_probs=209.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC----CCCCC-------chhhhccccCCCcccchhHHHHHHhCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY----FAFTP-------LLPSVTCGTVEARSIVEPVRNIVRKKNV 125 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~----~~~~p-------~l~~~~~g~~~~~~i~~~~~~~~~~~~i 125 (583)
.+.+|+|||+|||+.+||.++++...+.+|+|---. .+++. .+|.++.| +.-.++.+.+++...+.|
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdg-i~G~~l~d~mrkqs~r~G- 84 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDG-ITGPELMDKMRKQSERFG- 84 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcc-cccHHHHHHHHHHHHhhc-
Confidence 356999999999999999999999999999983211 11110 11122111 122367888999999898
Q ss_pred cEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHH
Q 007975 126 DICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIE 205 (583)
Q Consensus 126 ~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~ 205 (583)
.+++..+|.++|...+-+.+.+.. +.+.+|.+|+|||+..+...+||..+.-+-- +-+..
T Consensus 85 -t~i~tEtVskv~~sskpF~l~td~---------~~v~~~avI~atGAsAkRl~~pg~ge~~fWq----------rGiSa 144 (322)
T KOG0404|consen 85 -TEIITETVSKVDLSSKPFKLWTDA---------RPVTADAVILATGASAKRLHLPGEGEGEFWQ----------RGISA 144 (322)
T ss_pred -ceeeeeehhhccccCCCeEEEecC---------CceeeeeEEEecccceeeeecCCCCcchHHh----------cccch
Confidence 556789999999999977776543 3899999999999999989999864332111 11222
Q ss_pred HHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHH
Q 007975 206 SFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285 (583)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~ 285 (583)
|.-+... ...-+.|..+|||||.+++|-|..|..+. .+|++++|.+.+ +.+..++
T Consensus 145 CAVCDGa-----apifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f------RAs~~Mq 199 (322)
T KOG0404|consen 145 CAVCDGA-----APIFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF------RASKIMQ 199 (322)
T ss_pred hhcccCc-----chhhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh------hHHHHHH
Confidence 2221111 11246678999999999999999998874 699999999876 4455565
Q ss_pred HHHHh-CCCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCC
Q 007975 286 EKFSR-DGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEW 359 (583)
Q Consensus 286 ~~L~~-~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~ 359 (583)
++.++ .+|++++++.+.+..++ ++.+....+|+...++.+-+++++| -.|+++.+-.++.++.+|+|++-+.
T Consensus 200 ~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG--H~Pat~~l~gqve~d~~GYi~t~pg 277 (322)
T KOG0404|consen 200 QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG--HSPATKFLKGQVELDEDGYIVTRPG 277 (322)
T ss_pred HHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec--CCchhhHhcCceeeccCceEEeccC
Confidence 55554 59999999999888665 4777777789888899999999999 4666654444566688999999865
Q ss_pred CccCCCCCEEEcCcccccccchhhhHHHHHhhh
Q 007975 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSK 392 (583)
Q Consensus 360 l~~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~ 392 (583)
-..++.|++||+||+..-..++..++++.+.-+
T Consensus 278 ts~TsvpG~FAAGDVqD~kyRQAvTaAgsGcia 310 (322)
T KOG0404|consen 278 TSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIA 310 (322)
T ss_pred cccccccceeeccccchHHHHHHHhhhccchhh
Confidence 444489999999999987777766666555433
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=2.1e-24 Score=230.72 Aligned_cols=311 Identities=15% Similarity=0.146 Sum_probs=190.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEe
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~ 132 (583)
...+++|+||||||||++||..|++ .|++|+|+|+.+..++ .+.+.+.+.......+...+..++...+ ++|...
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG-lvr~gvaP~~~~~k~v~~~~~~~~~~~~--v~~~~n 99 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG-LVRSGVAPDHPETKNVTNQFSRVATDDR--VSFFGN 99 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc-eEeeccCCCcchhHHHHHHHHHHHHHCC--eEEEcC
Confidence 3456899999999999999999975 7999999999987554 2333444444444556666777777766 555332
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC-CCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKAS 211 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~ 211 (583)
. .+ .+.++++.. ...||+||+|||+.+ +.+++||.+.. .+.+..+.....+...+...
T Consensus 100 v--~v---g~dvtl~~L-----------~~~yDaVIlAtGa~~~~~l~IpG~d~~--gV~~a~~fl~~~ng~~d~~~--- 158 (491)
T PLN02852 100 V--TL---GRDVSLSEL-----------RDLYHVVVLAYGAESDRRLGIPGEDLP--GVLSAREFVWWYNGHPDCVH--- 158 (491)
T ss_pred E--EE---CccccHHHH-----------hhhCCEEEEecCCCCCCCCCCCCCCCC--CeEEHHHHHHHhhcchhhhh---
Confidence 1 11 223333322 347999999999985 67899996421 22223332221111101000
Q ss_pred CCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHh----Hhh-hcCCCC-CC-ceEEEEecCCcccCcc-cHHHH--
Q 007975 212 LPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDED----LFK-LYPKVK-DS-VKITLLEAADHILNMF-DKRIT-- 281 (583)
Q Consensus 212 ~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~----~~~-~~p~~~-~~-~~Vtlv~~~~~il~~~-~~~~~-- 281 (583)
+ ......+++|+|||+|++|+|+|..|.+...+. +.. .+..++ .+ .+|+++.|....-..| ..++.
T Consensus 159 ~----~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel 234 (491)
T PLN02852 159 L----PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELREL 234 (491)
T ss_pred h----hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHH
Confidence 0 000124679999999999999999987642110 000 000111 13 4699998876321111 11111
Q ss_pred -----------------------------------HHHHHHHHh---------CCCEEEeCCeEEEEeC-----Ce---E
Q 007975 282 -----------------------------------AFAEEKFSR---------DGIDVKLGSMVVKVTD-----KE---I 309 (583)
Q Consensus 282 -----------------------------------~~~~~~L~~---------~GV~v~~~~~V~~v~~-----~~---v 309 (583)
+.+.+...+ ++|.+++...+++|.+ +. +
T Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l 314 (491)
T PLN02852 235 LGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGV 314 (491)
T ss_pred hccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEE
Confidence 111112122 5799999999999852 22 3
Q ss_pred EEEEc--------------CCCeeEEeecceEEEccCCCCchhHHH-HHHHhCc--CCCcceEeCCCCccCCCCCEEEcC
Q 007975 310 FTKVR--------------GNGETSSMPYGMVVWSTGIAPHAIIKD-FMKQVGQ--TNRRALATDEWLRVEGSDSIYALG 372 (583)
Q Consensus 310 ~~~~~--------------~~G~~~~i~~D~vI~a~G~~~~p~~~~-l~~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiG 372 (583)
++... .+|+..+++||.||.++|+.+.|+... +....++ +.+|+|.+|+..+| +.|+|||+|
T Consensus 315 ~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaG 393 (491)
T PLN02852 315 KLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVG 393 (491)
T ss_pred EEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEee
Confidence 33311 146666799999999999876555421 2222233 66799999988777 899999999
Q ss_pred cccccccchhhhHHHHHhhhcc
Q 007975 373 DCATVNQRRVMEDIAAIFSKAD 394 (583)
Q Consensus 373 D~a~~~~~~~~~~~~~~~~~a~ 394 (583)
||...+...+.+++.++..++.
T Consensus 394 Di~~Gp~gvI~t~~~dA~~ta~ 415 (491)
T PLN02852 394 WLKRGPTGIIGTNLTCAEETVA 415 (491)
T ss_pred eEecCCCCeeeecHhhHHHHHH
Confidence 9999877677777777665554
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=4.1e-24 Score=236.63 Aligned_cols=262 Identities=19% Similarity=0.247 Sum_probs=166.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE-
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC- 134 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v- 134 (583)
...++|+|||+|++||++|..|++.|++|+|+|+.+.+++.. .+.+.... .+.++...-.+.+.+.|+++. +...+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~-~~~~~~~~~l~~~~~~Gv~~~-~~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-RYGIPAYR-LPREVLDAEIQRILDLGVEVR-LGVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-eecCCCcc-CCHHHHHHHHHHHHHCCCEEE-eCCEEC
Confidence 456899999999999999999999999999999998766432 11221112 222333333345566775442 22222
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC-CCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCC
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA-NTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLP 213 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 213 (583)
..+..+ . ....||++|+|+|+.. ....++|.+... . ..+..+...... .
T Consensus 212 ~~~~~~-------~-----------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~g--v---~~~~~~l~~~~~------~- 261 (564)
T PRK12771 212 EDITLE-------Q-----------LEGEFDAVFVAIGAQLGKRLPIPGEDAAG--V---LDAVDFLRAVGE------G- 261 (564)
T ss_pred CcCCHH-------H-----------HHhhCCEEEEeeCCCCCCcCCCCCCccCC--c---EEHHHHHHHhhc------c-
Confidence 111110 0 0235999999999974 456778754211 1 111111111110 0
Q ss_pred CCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc-ccCcccHHHHHHHHHHHHhCC
Q 007975 214 NLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH-ILNMFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 214 ~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~-il~~~~~~~~~~~~~~L~~~G 292 (583)
+ ....+++++|||+|.+++|.+..+.++.. .+|+++++.+. .++.....+ +.+.+.|
T Consensus 262 --~--~~~~gk~v~ViGgg~~a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~~~G 319 (564)
T PRK12771 262 --E--PPFLGKRVVVIGGGNTAMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEALREG 319 (564)
T ss_pred --C--CcCCCCCEEEECChHHHHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHHHcC
Confidence 0 11346799999999999999987777642 57899988764 244443333 3345689
Q ss_pred CEEEeCCeEEEEeCC--e---EE---EEEc---C-------CCeeEEeecceEEEccCCCCchhHHHHHHH-hCc-CCCc
Q 007975 293 IDVKLGSMVVKVTDK--E---IF---TKVR---G-------NGETSSMPYGMVVWSTGIAPHAIIKDFMKQ-VGQ-TNRR 352 (583)
Q Consensus 293 V~v~~~~~V~~v~~~--~---v~---~~~~---~-------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~~-~~~g 352 (583)
|++++++.++++..+ + ++ +... . +|++.++++|+||||+|..+.. .+++. .++ +.+|
T Consensus 320 Vki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~---~~~~~~~gl~~~~G 396 (564)
T PRK12771 320 VEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS---AGLESVPGVEVGRG 396 (564)
T ss_pred CEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch---hhhhhccCcccCCC
Confidence 999999999999643 2 22 2110 1 3445579999999999965543 34443 344 5678
Q ss_pred ceEeCC-CCccCCCCCEEEcCcccc
Q 007975 353 ALATDE-WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 353 ~i~Vd~-~l~~~~~~~VyAiGD~a~ 376 (583)
+|.||+ ++++ +.|+|||+|||+.
T Consensus 397 ~i~vd~~~~~t-s~~~Vfa~GD~~~ 420 (564)
T PRK12771 397 VVQVDPNFMMT-GRPGVFAGGDMVP 420 (564)
T ss_pred CEEeCCCCccC-CCCCEEeccCcCC
Confidence 999998 5555 8999999999974
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.4e-25 Score=213.22 Aligned_cols=283 Identities=20% Similarity=0.259 Sum_probs=208.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh----hhc-cccCCCcccchhHHHHHHhCCCcEEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP----SVT-CGTVEARSIVEPVRNIVRKKNVDICFW 130 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~----~~~-~g~~~~~~i~~~~~~~~~~~~i~v~~~ 130 (583)
...++|+||||||||-+||.+.+++|.+.-|+-. .|+++.+-. .+. ....+...+...+....+++.+++- -
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim-n 285 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM-N 285 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhh-h
Confidence 3468999999999999999999999999877753 366654322 111 1122233566677788888875542 2
Q ss_pred EeEEEEEecC-----CCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHH
Q 007975 131 EAECFKIDAE-----NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIE 205 (583)
Q Consensus 131 ~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~ 205 (583)
-.+++.+.+. ...|+++++. .+....+|++||++.+..++||.+++.- +. +..
T Consensus 286 ~qra~~l~~a~~~~~l~ev~l~nGa----------vLkaktvIlstGArWRn~nvPGE~e~rn--KG----------Vay 343 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEVELANGA----------VLKARTVILATGARWRNMNVPGEDEYRN--KG----------VAY 343 (520)
T ss_pred hhhhhcceecCCCCccEEEEecCCc----------eeccceEEEecCcchhcCCCCchHHHhh--CC----------eee
Confidence 3345566552 2367777765 8899999999999999999999764310 00 000
Q ss_pred HHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHH
Q 007975 206 SFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAE 285 (583)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~ 285 (583)
| |.. +...-++|+|+|||||++|+|.|..|+-.. .+||+++-.+.+ +.-+.++
T Consensus 344 C------PHC-DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL------kAD~VLq 396 (520)
T COG3634 344 C------PHC-DGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL------KADAVLQ 396 (520)
T ss_pred C------CCC-CCcccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh------hhHHHHH
Confidence 0 111 112347889999999999999999999875 489999876644 3345667
Q ss_pred HHHHhC-CCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCC
Q 007975 286 EKFSRD-GIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEW 359 (583)
Q Consensus 286 ~~L~~~-GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~ 359 (583)
+.|+.. +|+|+++..-++|.++ ++++.+..+|+.+.++-+-|++-+| --|++.+|-..+.++.+|.|.||..
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~WLkg~vel~~rGEIivD~~ 474 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTEWLKGAVELNRRGEIIVDAR 474 (520)
T ss_pred HHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChhHhhchhhcCcCccEEEecC
Confidence 777775 8999999999999875 3667777788888899999999999 5677754444556789999999999
Q ss_pred CccCCCCCEEEcCcccccccchhhhHHHHHhhhc
Q 007975 360 LRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (583)
Q Consensus 360 l~~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~a 393 (583)
..| +.|+|||+|||...+..++.-++..+..++
T Consensus 475 g~T-svpGvFAAGD~T~~~yKQIIIamG~GA~Aa 507 (520)
T COG3634 475 GET-NVPGVFAAGDCTTVPYKQIIIAMGEGAKAS 507 (520)
T ss_pred CCc-CCCceeecCcccCCccceEEEEecCcchhh
Confidence 998 999999999999999888777766665444
No 75
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=1.5e-24 Score=209.11 Aligned_cols=289 Identities=17% Similarity=0.258 Sum_probs=206.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCC-C-CCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNN-P-SYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~-~-g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~ 133 (583)
.+..+|+|||||.+|++.|..+.+ . .-+|.|||+.++|+|+|.+.-+..|....++-.....+++... ..+++..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~---a~wi~ek 113 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKG---ATWIKEK 113 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCC---cHHHHHH
Confidence 456899999999999999988873 2 3479999999999999999988888766665555555655543 4467889
Q ss_pred EEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccc-----cCcccCCHHHHHHHHHHHHHHHH
Q 007975 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE-----NCNFLKEVEDAQRIRRNVIESFE 208 (583)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~-----~~~~~~~~~~a~~l~~~l~~~~~ 208 (583)
|..+++++++|.+++++ +|.|||||||+|.+.++--|+|+.| .+...++.-.+.+....+.+.-+
T Consensus 114 v~~f~P~~N~v~t~gg~----------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~ 183 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGE----------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKK 183 (446)
T ss_pred HHhcCCCcCeEEccCCc----------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccC
Confidence 99999999999998765 9999999999999998888998754 34455566666666665544322
Q ss_pred HcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHH
Q 007975 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (583)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L 288 (583)
. .-+--.-.+++-|.-|..-..++.+.+.++.. .++..+|+.-..-+.+..- ....+.+++..
T Consensus 184 G--------------NAIfTfPntpiKCAGAPQKi~yise~y~Rk~g-vRd~a~iiy~Tsl~~iFgV--k~Y~~AL~k~~ 246 (446)
T KOG3851|consen 184 G--------------NAIFTFPNTPIKCAGAPQKIMYISESYFRKRG-VRDNANIIYNTSLPTIFGV--KHYADALEKVI 246 (446)
T ss_pred C--------------ceEEecCCCccccCCCchhhhhhhHHHHHHhC-ccccccEEEecCccceecH--HHHHHHHHHHH
Confidence 2 12222222332222222222333333444332 2345677776666666442 46678888889
Q ss_pred HhCCCEEEeCCeEEEEeCC--eEEEEEcCC-CeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCCcceEeCC-CCccC
Q 007975 289 SRDGIDVKLGSMVVKVTDK--EIFTKVRGN-GETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDE-WLRVE 363 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~~--~v~~~~~~~-G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~-~l~~~ 363 (583)
++++|++.....+.||..+ ..++++++. |...+++++++-++....++ +.+....+ +..|++.||. +||+.
T Consensus 247 ~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p----e~l~~s~~adktGfvdVD~~TlQs~ 322 (446)
T KOG3851|consen 247 QERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP----EVLANSDLADKTGFVDVDQSTLQSK 322 (446)
T ss_pred HhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh----hhhhcCcccCcccceecChhhhccc
Confidence 9999999999999999653 344554444 87788999999877665443 45555667 7889999996 89999
Q ss_pred CCCCEEEcCcccccc
Q 007975 364 GSDSIYALGDCATVN 378 (583)
Q Consensus 364 ~~~~VyAiGD~a~~~ 378 (583)
.+||||+||||++.|
T Consensus 323 kypNVFgiGDc~n~P 337 (446)
T KOG3851|consen 323 KYPNVFGIGDCMNLP 337 (446)
T ss_pred cCCCceeeccccCCC
Confidence 999999999999864
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=2.1e-22 Score=235.03 Aligned_cols=287 Identities=14% Similarity=0.117 Sum_probs=180.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCC-CcEEEEEeEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN-VDICFWEAECF 135 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~-i~v~~~~~~v~ 135 (583)
..++|+|||||||||+||..|++.|++|+|||+++..+++...........+..+....+.+.+...+ +++ +.+++|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v-~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTL-LPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEE-EcCCEEE
Confidence 35799999999999999999999999999999998776544322111111122233333444444443 443 2467888
Q ss_pred EEecCCCEEEEecCCC---C---CCCCCceEEeecCEEEEccCCCCCCCCCCCccc-cCcccCCHHHHHHHHHHHHHHHH
Q 007975 136 KIDAENKKVYCRSSQN---T---NLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE-NCNFLKEVEDAQRIRRNVIESFE 208 (583)
Q Consensus 136 ~id~~~~~v~~~~~~~---~---~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~a~~l~~~l~~~~~ 208 (583)
.++..+....++.... . .........+.||+||||||+.++.+++||.+. .++. ...+..+ +.
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~---~~~~~~~---l~---- 310 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVML---AGAARTY---LN---- 310 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEE---chHHHHH---HH----
Confidence 8865432222211000 0 000011236899999999999999999999753 2222 2121111 11
Q ss_pred HcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHH
Q 007975 209 KASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKF 288 (583)
Q Consensus 209 ~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L 288 (583)
... ...+++|+|||+|++|+|+|..|..... ..|++++..+.+. ..+.+.|
T Consensus 311 ~~~--------~~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~~~--------~~l~~~L 361 (985)
T TIGR01372 311 RYG--------VAPGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARADVS--------PEARAEA 361 (985)
T ss_pred hhC--------cCCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcchh--------HHHHHHH
Confidence 000 1245699999999999999999987631 3688998776442 3356778
Q ss_pred HhCCCEEEeCCeEEEEeCC----eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCC----C
Q 007975 289 SRDGIDVKLGSMVVKVTDK----EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEW----L 360 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~~----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~----l 360 (583)
++.||++++++.|+++.++ +|++.. .+|+..++++|.|+++.|..+ ++ .+...++.. +..|+. .
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~P--nt-~L~~~lg~~----~~~~~~~~~~~ 433 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGGWTP--VV-HLFSQRGGK----LAWDAAIAAFL 433 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCCcCc--hh-HHHHhcCCC----eeeccccCcee
Confidence 9999999999999999764 345542 123334699999999999554 44 455555431 222211 1
Q ss_pred ccCCCCCEEEcCcccccccchhhhHHHHHhhhc
Q 007975 361 RVEGSDSIYALGDCATVNQRRVMEDIAAIFSKA 393 (583)
Q Consensus 361 ~~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~a 393 (583)
..++.|+||++|||+... .+..++.+|..+|
T Consensus 434 ~~t~v~gVyaaGD~~g~~--~~~~A~~eG~~Aa 464 (985)
T TIGR01372 434 PGDAVQGCILAGAANGLF--GLAAALADGAAAG 464 (985)
T ss_pred cCCCCCCeEEeeccCCcc--CHHHHHHHHHHHH
Confidence 123689999999999653 4555666666544
No 77
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-22 Score=201.35 Aligned_cols=392 Identities=19% Similarity=0.302 Sum_probs=258.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcC--CCCCeEEEEcCCCCCCCC--Cchhhhcc-cc--------------------CCCcc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFT--PLLPSVTC-GT--------------------VEARS 111 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~--~~g~~Vtlie~~~~~~~~--p~l~~~~~-g~--------------------~~~~~ 111 (583)
+...-+|||+|.+..++++..+ ..+..|.+|..++...|. |+..++-. +. .+++.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 3456899999999998888776 577889999877766652 44333211 10 01111
Q ss_pred cchhHHHHHHhCCCcEEEEEe-EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCC-----Cccc
Q 007975 112 IVEPVRNIVRKKNVDICFWEA-ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP-----GVEE 185 (583)
Q Consensus 112 i~~~~~~~~~~~~i~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ip-----G~~~ 185 (583)
....-+++-+..+..|-++++ .|..||.+.+.|.++++. +|.||.++||||.+|...++- .+.+
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~----------~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ 326 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGT----------TIGYDKCLIATGVRPKKLQVFEEASEEVKQ 326 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCc----------EeehhheeeecCcCcccchhhhhcCHHhhh
Confidence 222223332222223545544 689999999999999876 999999999999998765431 2234
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEE
Q 007975 186 NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITL 265 (583)
Q Consensus 186 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtl 265 (583)
....++...|..++.+-+.+ .++|.|||+|+.|.|+|+.|.+..+ ..+.+|+-
T Consensus 327 kit~fr~p~DF~rlek~~ae-----------------k~siTIiGnGflgSELacsl~rk~r----------~~g~eV~Q 379 (659)
T KOG1346|consen 327 KITYFRYPADFKRLEKGLAE-----------------KQSITIIGNGFLGSELACSLKRKYR----------NEGVEVHQ 379 (659)
T ss_pred heeEEecchHHHHHHHhhhh-----------------cceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEEE
Confidence 55667788888887665432 2599999999999999999987643 14678877
Q ss_pred EecCCcccCc-ccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHH
Q 007975 266 LEAADHILNM-FDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 266 v~~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 342 (583)
+-.....+.. +++.++++..+.+++.||.|+.+..|.++.. ..+.+.. ++|.+ +..|+||.|+| -.|++ ++
T Consensus 380 vF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL-~dG~~--l~tD~vVvavG--~ePN~-el 453 (659)
T KOG1346|consen 380 VFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKL-SDGSE--LRTDLVVVAVG--EEPNS-EL 453 (659)
T ss_pred eecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEe-cCCCe--eeeeeEEEEec--CCCch-hh
Confidence 6555444432 5678999999999999999999999988854 4555553 56886 99999999999 45555 67
Q ss_pred HHHhCc--CC-CcceEeCCCCccCCCCCEEEcCcccccccchhhhHHHHHhhhcccCCCCCchhHHHHHHHHhhhcccch
Q 007975 343 MKQVGQ--TN-RRALATDEWLRVEGSDSIYALGDCATVNQRRVMEDIAAIFSKADKDNSGTLTVKEFQEVIKDICERYPQ 419 (583)
Q Consensus 343 ~~~~~~--~~-~g~i~Vd~~l~~~~~~~VyAiGD~a~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~ 419 (583)
.+..|+ +. -|...||..|+. ..|||++||++.+.++ ..|+.++++|++.+-..+
T Consensus 454 a~~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~----------------~LGrRRVehhdhavvSGR----- 510 (659)
T KOG1346|consen 454 AEASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDG----------------VLGRRRVEHHDHAVVSGR----- 510 (659)
T ss_pred cccccceeecccCcEEeeheeec--ccceeeecchhhhhcc----------------cccceeccccccceeece-----
Confidence 777776 43 378999999987 6899999999988653 368888999887654433
Q ss_pred hHHHhhhcccCch------hhhhhhhhccccccccccCHHHHHHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhhhhh
Q 007975 420 VELYLKNKKMGDF------GDLLKEAKGDVAQDAVELNIEEFKKALSEVDSQMKNLPATAQVAAQQGKYLAKCFNRMEEA 493 (583)
Q Consensus 420 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~taq~A~~qg~~~a~~i~~~~~~ 493 (583)
+++..|.+. .+||++.-++- -=.+.++..|+ ++|.....|.-. .|.+...+...
T Consensus 511 ----LAGENMtgAakpy~hqsmFWsdlgP~----------igyeaIGlvDS---SLpTVgVfA~p~---s~~~~~~~se~ 570 (659)
T KOG1346|consen 511 ----LAGENMTGAAKPYKHQSMFWSDLGPE----------IGYEAIGLVDS---SLPTVGVFALPS---SATRVDQLSES 570 (659)
T ss_pred ----ecccccccccCCccccceeeeccCcc----------cccceeeeccc---CCCcceeeeccc---cccchhhhhhc
Confidence 334445544 45777654432 11344555565 566666665544 22233222211
Q ss_pred ccC--------------CCCCccccCCCCCCCCCCeee--cCcceEEccCCCeeeecCCc
Q 007975 494 EKN--------------PEGPLRFRGTGRHRFQPFRYQ--HLGQFAPLGGEQTAAQLPWD 537 (583)
Q Consensus 494 ~~~--------------~~~~~~~~g~~~~~~~pf~~~--~~G~~~~lG~~~av~~~~~~ 537 (583)
... .++.+.-.| -+..|-.-- .+|.+.|+-++.-|+.+.++
T Consensus 571 sdt~v~~~s~s~s~ss~~~~~~s~~~---v~~~P~e~~~ygKgViFYl~d~~iVGilLwN 627 (659)
T KOG1346|consen 571 SDTDVPETSTSSSQSSKSDAGASQDG---VTCDPDEAGNYGKGVIFYLKDDKIVGILLWN 627 (659)
T ss_pred cCCCCccccccccccccccCCcCCCC---CccCcccccccCceEEEEecCCcEEEEEehh
Confidence 000 011111111 233344432 47889999888888776543
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.88 E-value=1.1e-21 Score=210.66 Aligned_cols=255 Identities=16% Similarity=0.197 Sum_probs=166.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhh----------------------------------
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPS---------------------------------- 101 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~---------------------------------- 101 (583)
...++|+|||||++||+||++|.+.|++|+|+|+++..++.+....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 4468999999999999999999999999999999877655432100
Q ss_pred ---hcc-c-----------cCCCcccchhHHHHHHhCCCc--EEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeec
Q 007975 102 ---VTC-G-----------TVEARSIVEPVRNIVRKKNVD--ICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDY 164 (583)
Q Consensus 102 ---~~~-g-----------~~~~~~i~~~~~~~~~~~~i~--v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~y 164 (583)
+.. . ....+++...++++.+..++. ++ ++.+|+.|++.++.+.+....+ +....+..|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~-~~t~V~~V~~~~~~w~V~~~~~----~~~~~~~~~ 162 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVR-FETEVVRVEPVDGKWRVQSKNS----GGFSKDEIF 162 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEE-ecCEEEEEeecCCeEEEEEEcC----CCceEEEEc
Confidence 000 0 001134666677888888865 54 4899999998766554443211 111225689
Q ss_pred CEEEEccC--CCCCCCCCCCccccC---cccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHH
Q 007975 165 DYLVIAMG--ARANTFNTPGVEENC---NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFA 239 (583)
Q Consensus 165 D~LViAtG--~~~~~~~ipG~~~~~---~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A 239 (583)
|+||+|+| +.|+.|.+||+++.. .+.+...+ ...-++++|+|||+|.+|+|+|
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~----------------------~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRV----------------------PDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEecccCC----------------------ccccCCCEEEEECCCcCHHHHH
Confidence 99999999 679999999975321 11111110 1113577999999999999999
Q ss_pred HHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC-CeEEEEEcCCCe
Q 007975 240 AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD-KEIFTKVRGNGE 318 (583)
Q Consensus 240 ~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~-~~v~~~~~~~G~ 318 (583)
.+|.... .+|+++++...+.. ...+.....++..+..|..+.+ +.|++.+ |+
T Consensus 221 ~~L~~~a--------------~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g~V~f~D---G~ 273 (461)
T PLN02172 221 RDIAKVA--------------KEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDGSIVFKN---GK 273 (461)
T ss_pred HHHHHhC--------------CeEEEEEeeccccc----------cccCcCCCCceEECCcccceecCCeEEECC---CC
Confidence 9999863 58999998764321 0112223345666777777654 4566654 77
Q ss_pred eEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCC--------ccCC-CCCEEEcCcc
Q 007975 319 TSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWL--------RVEG-SDSIYALGDC 374 (583)
Q Consensus 319 ~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l--------~~~~-~~~VyAiGD~ 374 (583)
. +++|.||+|+|+.++- .+++ ..|.+.||++. -.+. .|+++.+|=+
T Consensus 274 ~--~~~D~Ii~~TGy~~~~---pfL~-----~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 274 V--VYADTIVHCTGYKYHF---PFLE-----TNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred C--ccCCEEEECCcCCccc---cccC-----cccceeeCCCcchhhHHhhcCCCCCCcEEEEecc
Confidence 5 8899999999976542 2332 23445555421 1223 3788888855
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.83 E-value=4.1e-19 Score=198.79 Aligned_cols=255 Identities=16% Similarity=0.211 Sum_probs=149.1
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC--------------CCCCCCchhhhc---cccCCCcccc---
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN--------------YFAFTPLLPSVT---CGTVEARSIV--- 113 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~--------------~~~~~p~l~~~~---~g~~~~~~i~--- 113 (583)
...+.++|+||||||||++||+.|++.|++|||+|+.+ ...|.+++++.. .|.+....+.
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~ 458 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW 458 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence 34567899999999999999999999999999999853 224556666555 3332222222
Q ss_pred -----hhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCC-CCCCCCCCCccccC
Q 007975 114 -----EPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA-RANTFNTPGVEENC 187 (583)
Q Consensus 114 -----~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~-~~~~~~ipG~~~~~ 187 (583)
..++.++. .+.++++..+...+.| ++.++. ....||+||||||+ .|+.+++||.+ .
T Consensus 459 ~k~~l~~i~~il~-~g~~v~~~~gv~lG~d-----it~edl----------~~~gyDAV~IATGA~kpr~L~IPGed--a 520 (1028)
T PRK06567 459 DKNNLDILRLILE-RNNNFKYYDGVALDFN-----ITKEQA----------FDLGFDHIAFCIGAGQPKVLDIENFE--A 520 (1028)
T ss_pred hHHHHHHHHHHHh-cCCceEEECCeEECcc-----CCHHHH----------hhcCCCEEEEeCCCCCCCCCCCCCcc--C
Confidence 12223332 3445666444332222 222211 14679999999999 69999999975 2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHh--------hhHhHhhhcCCC--
Q 007975 188 NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDF--------VDEDLFKLYPKV-- 257 (583)
Q Consensus 188 ~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~--------~~~~~~~~~p~~-- 257 (583)
..+.+..++....+.. ..++... ......+++|||||||++|+|+|.+...+ +.....+.||..
T Consensus 521 ~GV~sA~DfL~~l~~~-~~~~~~~-----~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 521 KGVKTASDFLMTLQSG-GAFLKNS-----NTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred CCeEEHHHHHHHHhhc-ccccccc-----cCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 3444444433221111 0111110 01112357999999999999999954431 111111222210
Q ss_pred --------------------------CCCceEEEEecCCcc-cCcc---cHHHHHHHHHHHHhCCCEEEeCCeEEEEeC-
Q 007975 258 --------------------------KDSVKITLLEAADHI-LNMF---DKRITAFAEEKFSRDGIDVKLGSMVVKVTD- 306 (583)
Q Consensus 258 --------------------------~~~~~Vtlv~~~~~i-l~~~---~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~- 306 (583)
.....|++++|...- +|.. ..++ +...+.||+++.+..+.+|..
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d 669 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVD 669 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEec
Confidence 011228999887643 4443 2232 344567999999999999853
Q ss_pred --Ce---EEEEEc------------CCC-------------eeEEeecceEEEccCCCCchhH
Q 007975 307 --KE---IFTKVR------------GNG-------------ETSSMPYGMVVWSTGIAPHAII 339 (583)
Q Consensus 307 --~~---v~~~~~------------~~G-------------~~~~i~~D~vI~a~G~~~~p~~ 339 (583)
+. +++... .++ ++.+|+||+||.|+| ..|++
T Consensus 670 ~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G--~~~~~ 730 (1028)
T PRK06567 670 KYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG--IENNT 730 (1028)
T ss_pred CCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc--cCCcc
Confidence 22 233211 112 446799999999999 44544
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=2.7e-20 Score=197.29 Aligned_cols=284 Identities=17% Similarity=0.169 Sum_probs=183.2
Q ss_pred CCCCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEE
Q 007975 52 PEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWE 131 (583)
Q Consensus 52 ~~~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~ 131 (583)
.+...+.++|.|||||||||+||..|.+.|++||++|+.+..+.. +.+. .+....+.++.....+++.+.|++++ +.
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~kl~k~i~d~~i~~l~~~Gv~~~-~~ 193 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDFKLPKDILDRRLELLERSGVEFK-LN 193 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee-EEec-CchhhccchHHHHHHHHHHHcCeEEE-Ec
Confidence 333455699999999999999999999999999999998776543 2333 33334455788888889999985443 23
Q ss_pred eEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHc
Q 007975 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKA 210 (583)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~ 210 (583)
.++ +. .++++.. .-.||++++++|+. |+..++||.+. ..+..|..+..++.......
T Consensus 194 ~~v-G~-----~it~~~L-----------~~e~Dav~l~~G~~~~~~l~i~g~d~-----~gv~~A~dfL~~~~~~~~~~ 251 (457)
T COG0493 194 VRV-GR-----DITLEEL-----------LKEYDAVFLATGAGKPRPLDIPGEDA-----KGVAFALDFLTRLNKEVLGD 251 (457)
T ss_pred ceE-CC-----cCCHHHH-----------HHhhCEEEEeccccCCCCCCCCCcCC-----CcchHHHHHHHHHHHHHhcc
Confidence 322 22 2222221 34579999999986 88889999741 12334444333322211111
Q ss_pred CCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc--cCcccHHHHHHHHHHH
Q 007975 211 SLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI--LNMFDKRITAFAEEKF 288 (583)
Q Consensus 211 ~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i--l~~~~~~~~~~~~~~L 288 (583)
.++ .......+++|+|||||.|++|++....+... .+|+.+++...- .+..+....+...+..
T Consensus 252 -~~~-~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a 316 (457)
T COG0493 252 -FAE-DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSA 316 (457)
T ss_pred -ccc-ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhh
Confidence 000 01112345899999999999999988777643 477777522211 1222222345556777
Q ss_pred HhCCCEEEeCCeEEEEeC---CeEEEE---Ec----------------CCCeeEEeecceEEEccCCCCchhHHHHHH-H
Q 007975 289 SRDGIDVKLGSMVVKVTD---KEIFTK---VR----------------GNGETSSMPYGMVVWSTGIAPHAIIKDFMK-Q 345 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~---~~v~~~---~~----------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~-~ 345 (583)
.+.|+.........++.. +.|+-. .. ..|++..+++|+|+.++|..+++....+.. .
T Consensus 317 ~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~ 396 (457)
T COG0493 317 GEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFG 396 (457)
T ss_pred hhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccc
Confidence 888988888877777753 233211 10 135666899999999999766643311111 2
Q ss_pred hCcCCCcceEeCCCC-ccCCCCCEEEcCcccc
Q 007975 346 VGQTNRRALATDEWL-RVEGSDSIYALGDCAT 376 (583)
Q Consensus 346 ~~~~~~g~i~Vd~~l-~~~~~~~VyAiGD~a~ 376 (583)
+..+.+|.+.+|+.+ +| +.|++||.|||..
T Consensus 397 ~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~ 427 (457)
T COG0493 397 LKLDKRGRIKVDENLQQT-SIPGVFAGGDAVR 427 (457)
T ss_pred cccCCCCceecccccccc-cCCCeeeCceecc
Confidence 334778999999998 66 8999999999976
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.78 E-value=1.1e-18 Score=189.79 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=101.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhh------------hcc----------c---------c
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPS------------VTC----------G---------T 106 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~------------~~~----------g---------~ 106 (583)
+++|+|||||++||++|+.|.+.|+++|++|+++..++.....+ ... + .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37999999999999999999999999999999988776543211 000 0 0
Q ss_pred CCCcccchhHHHHHHhCCC--cEEEEEeEEEEEecCC-----CEEEEecCCCCCCCCCceEEeecCEEEEccCCC--CCC
Q 007975 107 VEARSIVEPVRNIVRKKNV--DICFWEAECFKIDAEN-----KKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR--ANT 177 (583)
Q Consensus 107 ~~~~~i~~~~~~~~~~~~i--~v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~--~~~ 177 (583)
....++.++++.+.++.++ .++| +++|+++.... .+..+.... +++..+..||+||+|+|.. |+.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~f-nt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~~~~~fD~VvvatG~~~~P~~ 154 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRF-NTEVVSVERDPDFSATGKWEVTTEN-----DGKEETEEFDAVVVATGHFSKPNI 154 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEET-SEEEEEEEEETTTT-ETEEEEEETT-----TTEEEEEEECEEEEEE-SSSCESB
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEE-ccEEeEeeeccccCCCceEEEEeec-----CCeEEEEEeCeEEEcCCCcCCCCC
Confidence 0113466778888887765 4553 88899887642 233332221 1223466799999999964 777
Q ss_pred CC--CCCccccC---cccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhh
Q 007975 178 FN--TPGVEENC---NFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFV 246 (583)
Q Consensus 178 ~~--ipG~~~~~---~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~ 246 (583)
|. +||++... .+.+... ..+.-++|+|+|||+|.+|+|+|.+++...
T Consensus 155 P~~~~~G~e~F~G~i~HS~~yr----------------------~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a 206 (531)
T PF00743_consen 155 PEPSFPGLEKFKGEIIHSKDYR----------------------DPEPFKGKRVLVVGGGNSGADIAVELSRVA 206 (531)
T ss_dssp -----CTGGGHCSEEEEGGG------------------------TGGGGTTSEEEEESSSHHHHHHHHHHTTTS
T ss_pred ChhhhhhhhcCCeeEEccccCc----------------------ChhhcCCCEEEEEeCCHhHHHHHHHHHHhc
Confidence 74 88876321 1111111 122356789999999999999999998754
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.78 E-value=3.5e-20 Score=177.89 Aligned_cols=140 Identities=29% Similarity=0.425 Sum_probs=88.5
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-Cchh-hhccccCCCcccch-----hHHHHHHhCCCcEEE-EE
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT-PLLP-SVTCGTVEARSIVE-----PVRNIVRKKNVDICF-WE 131 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~-p~l~-~~~~g~~~~~~i~~-----~~~~~~~~~~i~v~~-~~ 131 (583)
||||||||+||++||..|++.+++|+|||+.+...+. ..++ .............. .+.+.+...+ +++ +.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRG--VEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHT--HEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccce--EEEeec
Confidence 6999999999999999999999999999988643331 1111 11111101011111 3333344555 444 68
Q ss_pred eEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHH
Q 007975 132 AECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRN 202 (583)
Q Consensus 132 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~ 202 (583)
+++..|+...+.+................++.||+||+|||+.|+.+++||. +.....+...++..+.+.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTH
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccc
Confidence 9999999998864111000000001123589999999999999999999997 355555677777766554
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=188.06 Aligned_cols=286 Identities=19% Similarity=0.231 Sum_probs=164.5
Q ss_pred CcCCCCCCCCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCC
Q 007975 46 AYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNV 125 (583)
Q Consensus 46 ~~~~~~~~~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i 125 (583)
.|..|-.+...+.++|.|||+|||||+||-+|.+.|+.|||+||.+..++. +.+.++.=.++. .+++.--+++.+.|+
T Consensus 1773 gwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l~ygipnmkldk-~vv~rrv~ll~~egi 1850 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-LMYGIPNMKLDK-FVVQRRVDLLEQEGI 1850 (2142)
T ss_pred cCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-eeecCCccchhH-HHHHHHHHHHHhhCc
Confidence 344455555667899999999999999999999999999999999987653 333333222222 356666678888884
Q ss_pred cEEEE-EeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHH
Q 007975 126 DICFW-EAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNV 203 (583)
Q Consensus 126 ~v~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l 203 (583)
+|+ ++++ .+.|.+... .-.+|.+|+|+|+. |+..++||-+- +.+.-|.++.++-
T Consensus 1851 --~f~tn~ei------gk~vs~d~l-----------~~~~daiv~a~gst~prdlpv~grd~-----kgv~fame~l~~n 1906 (2142)
T KOG0399|consen 1851 --RFVTNTEI------GKHVSLDEL-----------KKENDAIVLATGSTTPRDLPVPGRDL-----KGVHFAMEFLEKN 1906 (2142)
T ss_pred --eEEeeccc------cccccHHHH-----------hhccCeEEEEeCCCCCcCCCCCCccc-----cccHHHHHHHHHh
Confidence 453 3222 223433221 45699999999997 89999999652 2333344433221
Q ss_pred HHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc---------ccC
Q 007975 204 IESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH---------ILN 274 (583)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~---------il~ 274 (583)
...+-...+. -.....++|+|+|||||.+|-++.+.-.+.+.+ .|.-++--|. +.|
T Consensus 1907 tk~lld~~~d--~~~~~~~gkkvivigggdtg~dcigtsvrhg~~-------------sv~n~ellp~pp~~ra~~npwp 1971 (2142)
T KOG0399|consen 1907 TKSLLDSVLD--GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK-------------SVGNFELLPQPPPERAPDNPWP 1971 (2142)
T ss_pred HHhhhccccc--cceeccCCCeEEEECCCCccccccccchhhccc-------------eecceeecCCCCcccCCCCCCc
Confidence 1111000000 011235789999999999999998887766532 2222221111 112
Q ss_pred cccHH-----HHHHHHHHHHhC--CCEEE------------eCCeEEEEe--C---CeEEEEEcCCCeeEEeecceEEEc
Q 007975 275 MFDKR-----ITAFAEEKFSRD--GIDVK------------LGSMVVKVT--D---KEIFTKVRGNGETSSMPYGMVVWS 330 (583)
Q Consensus 275 ~~~~~-----~~~~~~~~L~~~--GV~v~------------~~~~V~~v~--~---~~v~~~~~~~G~~~~i~~D~vI~a 330 (583)
..+.- -.+.++++.-+. --.|. ++-+.+.|+ . +.-.+.. ..++++.++||+||+|
T Consensus 1972 qwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e-i~~see~~eadlv~la 2050 (2142)
T KOG0399|consen 1972 QWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE-INNSEEIIEADLVILA 2050 (2142)
T ss_pred cCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE-cCCcceeeecceeeee
Confidence 11100 011122221110 01111 111222221 1 1122222 2244456999999999
Q ss_pred cCCCCchhHHHHHHHhCc--CCCcceEeCC-CCccCCCCCEEEcCcccc
Q 007975 331 TGIAPHAIIKDFMKQVGQ--TNRRALATDE-WLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 331 ~G~~~~p~~~~l~~~~~~--~~~g~i~Vd~-~l~~~~~~~VyAiGD~a~ 376 (583)
.|+-.+.. ...+++++ +.++.|.... .+.+ +.+.|||+|||-.
T Consensus 2051 mgf~gpe~--~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrr 2096 (2142)
T KOG0399|consen 2051 MGFVGPEK--SVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRR 2096 (2142)
T ss_pred ccccCcch--hhhhhcCcccCccccccCCCccccc-cccceeecccccC
Confidence 99766543 34566766 5666666543 4555 8999999999965
No 84
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.75 E-value=1.7e-18 Score=163.31 Aligned_cols=266 Identities=18% Similarity=0.278 Sum_probs=166.2
Q ss_pred eEEEECCcHHHHHHHHhcC--CCCCeEEEEcCCCCCCCCCchhhhccccCCCcccch-hHHHHHHhCCCcEEEEEeEEEE
Q 007975 60 KVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVE-PVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~--~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~-~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
+.+|||||+||.+||.+|+ ++..+|.||...+..--..-+..+ ...++.-++.+ ...++..... +|++. |..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i-~~ylekfdv~eq~~~elg~~f~---~~~~~-v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKI-GQYLEKFDVKEQNCHELGPDFR---RFLND-VVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHH-HHHHHhcCccccchhhhcccHH---HHHHh-hhh
Confidence 3689999999999999998 677899999877432110000000 00000000000 0111111111 23444 777
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLS 216 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~ 216 (583)
++...+.+.++++. .+.|++|++++|..|.. ...|.+.....+++.+.++.++.++.
T Consensus 76 ~~s~ehci~t~~g~----------~~ky~kKOG~tg~kPkl-q~E~~n~~Iv~irDtDsaQllq~kl~------------ 132 (334)
T KOG2755|consen 76 WDSSEHCIHTQNGE----------KLKYFKLCLCTGYKPKL-QVEGINPKIVGIRDTDSAQLLQCKLV------------ 132 (334)
T ss_pred hccccceEEecCCc----------eeeEEEEEEecCCCcce-eecCCCceEEEEecCcHHHHHHHHHh------------
Confidence 88888899998775 89999999999999964 34555677788888999988887764
Q ss_pred HHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-ccHHHHHHHHHHHHhC----
Q 007975 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-FDKRITAFAEEKFSRD---- 291 (583)
Q Consensus 217 ~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~~---- 291 (583)
+.|.|.|+|.|-+++|++.++.. .+|++....+.|-.. |+|...+.+...|...
T Consensus 133 -----kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~ 191 (334)
T KOG2755|consen 133 -----KAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTR 191 (334)
T ss_pred -----hcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhcccccc
Confidence 56799999999999999999865 477777777666543 4555544444333110
Q ss_pred --------CCEEEeCC-----------------------------------eEEEEe-C---CeEEEEEcCCCeeEEeec
Q 007975 292 --------GIDVKLGS-----------------------------------MVVKVT-D---KEIFTKVRGNGETSSMPY 324 (583)
Q Consensus 292 --------GV~v~~~~-----------------------------------~V~~v~-~---~~v~~~~~~~G~~~~i~~ 324 (583)
.++.+.++ ++..+. + ..++..+...|.-..+.+
T Consensus 192 ~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~ 271 (334)
T KOG2755|consen 192 IIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTC 271 (334)
T ss_pred hhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeee
Confidence 11111110 000000 0 001111111121123779
Q ss_pred ceEEEccCCCCchhHHHH-HHHhCcCCCcceEeCCCCccCCCCCEEEcCccccc
Q 007975 325 GMVVWSTGIAPHAIIKDF-MKQVGQTNRRALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 325 D~vI~a~G~~~~p~~~~l-~~~~~~~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
|.++|++|+.++. ..+ ...+.+.++|.+.||+.+++ +.|+|||+||++..
T Consensus 272 d~ivSatgvtpn~--e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 272 DFIVSATGVTPNS--EWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred eEEEeccccCcCc--eEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 9999999976554 322 33344578899999999999 89999999999875
No 85
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.66 E-value=2.1e-14 Score=146.61 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=176.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCc-ccchh-HHHHHHhCCCcEEEEEeE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEAR-SIVEP-VRNIVRKKNVDICFWEAE 133 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~-~i~~~-~~~~~~~~~i~v~~~~~~ 133 (583)
...++++|||||+|||+||+.|+..|++|+|||+++..++..........+.+.. -+..| +.+.....++++ +..++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l-~Tyae 200 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL-ITYAE 200 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee-eeeee
Confidence 4457999999999999999999999999999999999988754333222222211 11222 233333333332 33556
Q ss_pred EEEEecCCC--EEEEecCC-----------------------------C-------------------------------
Q 007975 134 CFKIDAENK--KVYCRSSQ-----------------------------N------------------------------- 151 (583)
Q Consensus 134 v~~id~~~~--~v~~~~~~-----------------------------~------------------------------- 151 (583)
|+.|+-.-. +|+++... +
T Consensus 201 V~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~ 280 (622)
T COG1148 201 VEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCE 280 (622)
T ss_pred eeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhh
Confidence 655443211 11111000 0
Q ss_pred -------CCC-CCCceEEeecCEEEEccCCCCCCCCCCCccccCcc-cCCHHHHHHHHHHHHHHHHHcCCCC----CCHH
Q 007975 152 -------TNL-NGKEEFCMDYDYLVIAMGARANTFNTPGVEENCNF-LKEVEDAQRIRRNVIESFEKASLPN----LSDE 218 (583)
Q Consensus 152 -------~~~-~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~~~~~-~~~~~~a~~l~~~l~~~~~~~~~~~----~~~~ 218 (583)
.+. ...++.++....+|+|||-.+....- ..++.+. +.++-...++.+-+.. +-|+ +-+.
T Consensus 281 ~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~--k~EyGYG~~~nVIT~lElErml~~-----~GPT~GkvlrpS 353 (622)
T COG1148 281 KACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATR--KEEYGYGKYPNVITNLELERMLNP-----NGPTGGKVLRPS 353 (622)
T ss_pred hcCCccccccCCCCcEEEEEeceEEEEccccccCcch--hhhcCCCCCcchhhHHHHHHHhcc-----CCCCCceEEecC
Confidence 000 12234578889999999988754322 2233332 2233333333322211 1010 1122
Q ss_pred HHhccceEEEE---cCCh------hHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHH
Q 007975 219 ERKRILHFVIV---GGGP------TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFS 289 (583)
Q Consensus 219 ~~~~~~~vvVV---GgG~------tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~ 289 (583)
.....++|+.| |.-. --.-..+..+..-...+.+.||+ .+|+++...-+-. +....++..+.-+
T Consensus 354 dg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd----~~v~I~YmDiRaf---G~~yEefY~~~Q~ 426 (622)
T COG1148 354 DGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPD----TDVTIYYMDIRAF---GKDYEEFYVRSQE 426 (622)
T ss_pred CCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCC----cceeEEEEEeecc---CccHHHHHHhhhh
Confidence 23466788875 4322 11122222222223345667766 6888887665443 3334444555555
Q ss_pred hCCCEEEeCCeEEEEe---CCe--EEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc--CCCcceEeC-CCCc
Q 007975 290 RDGIDVKLGSMVVKVT---DKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ--TNRRALATD-EWLR 361 (583)
Q Consensus 290 ~~GV~v~~~~~V~~v~---~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~--~~~g~i~Vd-~~l~ 361 (583)
+.||+++.+ ++.+|. ++. |...++-.|+..++++|+||+++|+.+.+-.+.+..-+|+ +.+|++... +.++
T Consensus 427 ~~gV~fIRG-rvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~ 505 (622)
T COG1148 427 DYGVRFIRG-RVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLR 505 (622)
T ss_pred hhchhhhcC-ChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcc
Confidence 789999987 455553 333 4555666677778999999999999988888888887887 778888766 5555
Q ss_pred cC--CCCCEEEcCcccc
Q 007975 362 VE--GSDSIYALGDCAT 376 (583)
Q Consensus 362 ~~--~~~~VyAiGD~a~ 376 (583)
.. ..++||.+|=|..
T Consensus 506 pv~s~~~GIflAG~aqg 522 (622)
T COG1148 506 PVDSNRDGIFLAGAAQG 522 (622)
T ss_pred cccccCCcEEEeecccC
Confidence 32 4679999998864
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.62 E-value=4.7e-16 Score=149.50 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=99.4
Q ss_pred EEECCcHHHHHHHHhcCCCCCe-EEEEcCCCCCCCCCc---------hhh-----h------------------ccccCC
Q 007975 62 VVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPL---------LPS-----V------------------TCGTVE 108 (583)
Q Consensus 62 VIIGgG~aGl~aA~~L~~~g~~-Vtlie~~~~~~~~p~---------l~~-----~------------------~~g~~~ 108 (583)
+|||||++||++|..|.+.|.+ |+|||+++..+.... .+. . ......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999999855433210 000 0 011122
Q ss_pred CcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCC--CCCCCCCCC-ccc
Q 007975 109 ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPG-VEE 185 (583)
Q Consensus 109 ~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~--~~~~~~ipG-~~~ 185 (583)
.+++...++.+.++++++++ .+.+|+++..++....+....+ +++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~-~~~~V~~v~~~~~~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIR-FNTRVESVRRDGDGWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEE-TS--EEEEEEETTTEEEEETTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccc-cCCEEEEEEEeccEEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccccccc
Confidence 23456677888888887765 4888999988776444433221 27889999999996 688888998 322
Q ss_pred cCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEE
Q 007975 186 NCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITL 265 (583)
Q Consensus 186 ~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtl 265 (583)
..+...... ....-++++|+|||+|.+|+|+|..|++. +.+|++
T Consensus 152 ~~~h~~~~~----------------------~~~~~~~k~V~VVG~G~SA~d~a~~l~~~--------------g~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWR----------------------DPEDFKGKRVVVVGGGNSAVDIAYALAKA--------------GKSVTL 195 (203)
T ss_dssp EEEEGGG-S----------------------TTGGCTTSEEEEE--SHHHHHHHHHHTTT--------------CSEEEE
T ss_pred ceEehhhcC----------------------ChhhcCCCcEEEEcChHHHHHHHHHHHhh--------------CCEEEE
Confidence 222211111 11123567999999999999999999875 479999
Q ss_pred EecCCc
Q 007975 266 LEAADH 271 (583)
Q Consensus 266 v~~~~~ 271 (583)
+.|.+.
T Consensus 196 ~~R~~~ 201 (203)
T PF13738_consen 196 VTRSPI 201 (203)
T ss_dssp EESS--
T ss_pred EecCCC
Confidence 999863
No 87
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.59 E-value=9.2e-15 Score=145.15 Aligned_cols=307 Identities=18% Similarity=0.224 Sum_probs=181.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAE 133 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~ 133 (583)
...++|+|||+||||+.+|..|.+ .+++|+|+|+.+. .|...-+.+++...+...+...+...++... +.|.. .
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~r--fsf~g-N 93 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHER--FSFFG-N 93 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccc--eEEEe-c
Confidence 445799999999999999998874 6799999999985 4445567777777777777777888877654 55532 1
Q ss_pred EEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCC-CCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCC
Q 007975 134 CFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR-ANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASL 212 (583)
Q Consensus 134 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~ 212 (583)
| .| .+.+.+... +-.||.+|+|.|+. ++.++|||.+ ...+.+...+....+.+-+.- .
T Consensus 94 v-~v---G~dvsl~eL-----------~~~ydavvLaYGa~~dR~L~IPGe~--l~~V~Sarefv~Wyng~P~~~---~- 152 (468)
T KOG1800|consen 94 V-KV---GRDVSLKEL-----------TDNYDAVVLAYGADGDRRLDIPGEE--LSGVISAREFVGWYNGLPENQ---N- 152 (468)
T ss_pred c-ee---cccccHHHH-----------hhcccEEEEEecCCCCcccCCCCcc--cccceehhhhhhhccCCCccc---c-
Confidence 1 11 122333322 45799999999997 8889999964 333334444443333211110 0
Q ss_pred CCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhH-hhhcCC-----C--CCCceEEEEecCCcccCcc--------
Q 007975 213 PNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDL-FKLYPK-----V--KDSVKITLLEAADHILNMF-------- 276 (583)
Q Consensus 213 ~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~-~~~~p~-----~--~~~~~Vtlv~~~~~il~~~-------- 276 (583)
.+.+-.+.+|+|||-|++++++|..|...-...+ ....|. + .+-.+|+|+-|..-+-..|
T Consensus 153 ----le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~ 228 (468)
T KOG1800|consen 153 ----LEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREV 228 (468)
T ss_pred ----cCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHH
Confidence 0112336699999999999999998865433322 122221 1 1335788887654211110
Q ss_pred ------------------------------cHHHHHHHHHHHHhC---------CCE---EEeCCeEEEEeCC-----eE
Q 007975 277 ------------------------------DKRITAFAEEKFSRD---------GID---VKLGSMVVKVTDK-----EI 309 (583)
Q Consensus 277 ------------------------------~~~~~~~~~~~L~~~---------GV~---v~~~~~V~~v~~~-----~v 309 (583)
..++.+.+.+.+.++ +.+ +++.....+|.++ ++
T Consensus 229 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~ 308 (468)
T KOG1800|consen 229 LELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGV 308 (468)
T ss_pred hCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccce
Confidence 012222222222220 110 0000011111111 11
Q ss_pred EEE--------EcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCccC---CCCCEEEcCcccccc
Q 007975 310 FTK--------VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRVE---GSDSIYALGDCATVN 378 (583)
Q Consensus 310 ~~~--------~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~~---~~~~VyAiGD~a~~~ 378 (583)
.+. ...+|...+++|++++.++|++..|... .++.+.+..++-+...++. -.|++|+.|-|...|
T Consensus 309 ~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~----gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP 384 (468)
T KOG1800|consen 309 RFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS----GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGP 384 (468)
T ss_pred EEEeeeehhhcccccCceEeeccceeEeeeeecccccCC----CCCcccccCcccCCCceEEeeccCCceEEEeeeccCC
Confidence 111 1234666679999999999988776442 2344333333333333331 259999999999998
Q ss_pred cchhhhHHHHHhhhccc
Q 007975 379 QRRVMEDIAAIFSKADK 395 (583)
Q Consensus 379 ~~~~~~~~~~~~~~a~~ 395 (583)
..-+++.+.+++..++.
T Consensus 385 ~GvIattm~dAf~v~d~ 401 (468)
T KOG1800|consen 385 TGVIATTMQDAFEVADT 401 (468)
T ss_pred cceeeehhhhHHHHHHH
Confidence 88888888888877764
No 88
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.57 E-value=2.4e-14 Score=147.99 Aligned_cols=238 Identities=16% Similarity=0.211 Sum_probs=127.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC-CCeEEEEcCCCCCCCCCc--hhhh------ccccCC---C----------------
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFTPL--LPSV------TCGTVE---A---------------- 109 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~-g~~Vtlie~~~~~~~~p~--l~~~------~~g~~~---~---------------- 109 (583)
.+++++||.||++|+.|..|... ..++..+|+++.+.|.|. ++.. ....+. |
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 46899999999999999999844 489999999998888752 2221 111111 1
Q ss_pred -------------cccchhHHHHHHhCCCcEEEEEeEEEEEecCCC------EEEEecCCCCCCCCCceEEeecCEEEEc
Q 007975 110 -------------RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK------KVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (583)
Q Consensus 110 -------------~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~------~v~~~~~~~~~~~~~~~~~i~yD~LViA 170 (583)
.+...+++...++....++| ..+|+.|++... .|.+.+.. +....+.++.||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~------g~~~~~~ar~vVla 154 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSD------GDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETT------S-EEEEEESEEEE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecC------CCeeEEEeCeEEEC
Confidence 01122233333444534764 889999988653 45553321 12358999999999
Q ss_pred cCCCCCCCCCCC-cc--ccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhh
Q 007975 171 MGARANTFNTPG-VE--ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVD 247 (583)
Q Consensus 171 tG~~~~~~~ipG-~~--~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~ 247 (583)
+|..|..|..-. .. +.+++..... .+.. .....++|+|||||.+|.|++..|.+..
T Consensus 155 ~G~~P~iP~~~~~~~~~~~v~Hss~~~------~~~~--------------~~~~~~~V~VVGgGQSAAEi~~~L~~~~- 213 (341)
T PF13434_consen 155 TGGQPRIPEWFQDLPGSPRVFHSSEYL------SRID--------------QSLAGKRVAVVGGGQSAAEIFLDLLRRG- 213 (341)
T ss_dssp ---EE---GGGGGGTT-TTEEEGGGHH------HHHT-------------------EEEEEE-SSHHHHHHHHHHHHH--
T ss_pred cCCCCCCCcchhhcCCCCCEEEehHhh------hccc--------------cccCCCeEEEECCcHhHHHHHHHHHhCC-
Confidence 998877653222 11 2222222111 1110 0235579999999999999999998763
Q ss_pred HhHhhhcCCCCCCceEEEEecCCcccCc---------ccHHHHH-------------------------------HHHHH
Q 007975 248 EDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITA-------------------------------FAEEK 287 (583)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~il~~---------~~~~~~~-------------------------------~~~~~ 287 (583)
+..+|+++.|++.+.|. |+|+..+ .+.+.
T Consensus 214 -----------~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~ 282 (341)
T PF13434_consen 214 -----------PEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDR 282 (341)
T ss_dssp -----------TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHH
T ss_pred -----------CCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHH
Confidence 23799999999876542 2333211 11111
Q ss_pred ------HHhCCCEEEeCCeEEEEe--C-CeE--EEEEcCCCeeEEeecceEEEccCCC
Q 007975 288 ------FSRDGIDVKLGSMVVKVT--D-KEI--FTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 288 ------L~~~GV~v~~~~~V~~v~--~-~~v--~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
..+..++++.+++|++++ + +++ .+.+..+|+..++++|.||+|||++
T Consensus 283 lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 283 LYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred HHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 123357899999999985 3 244 4455456667789999999999963
No 89
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=2.6e-14 Score=151.05 Aligned_cols=225 Identities=17% Similarity=0.211 Sum_probs=139.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh--------h----h-------ccc-----------
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP--------S----V-------TCG----------- 105 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~--------~----~-------~~g----------- 105 (583)
+..++|+|||||+|||.+|+.|.+.|++++++||.+.+++..... . . ..+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 457899999999999999999999999999999998776543222 1 0 000
Q ss_pred -c-CCCcccchhHHHHHHhCCC--cEEEEEeEEEEEecCC---CEEEEecCCCCCCCCCceEEeecCEEEEccCCC--CC
Q 007975 106 -T-VEARSIVEPVRNIVRKKNV--DICFWEAECFKIDAEN---KKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGAR--AN 176 (583)
Q Consensus 106 -~-~~~~~i~~~~~~~~~~~~i--~v~~~~~~v~~id~~~---~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~--~~ 176 (583)
. .+..++.++++++++..++ .++| +.+|..++... ..|.+.+..+ . ..+.-||.||+|+|.. |+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~-----~-~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGT-----Q-IEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCc-----c-eeEEEeeEEEEcccCcCCCC
Confidence 0 1112566677888877774 3444 66677777765 2555554321 1 2477899999999987 77
Q ss_pred CCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCC
Q 007975 177 TFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPK 256 (583)
Q Consensus 177 ~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~ 256 (583)
.|.+||.....+.- ..-+....+ ..+.-++++|+|||+|++|+|++.+++...
T Consensus 157 ~P~~~g~~~~~f~G-~~iHS~~Yk----------------~~e~f~~k~VlVIG~g~SG~DIs~d~~~~a---------- 209 (448)
T KOG1399|consen 157 IPQIPGPGIESFKG-KIIHSHDYK----------------SPEKFRDKVVLVVGCGNSGMDISLDLLRVA---------- 209 (448)
T ss_pred CCcCCCCchhhcCC-cceehhhcc----------------CcccccCceEEEECCCccHHHHHHHHHHhc----------
Confidence 88887732000000 000000000 112245679999999999999999988764
Q ss_pred CCCCceEEEEecC--CcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 257 VKDSVKITLLEAA--DHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 257 ~~~~~~Vtlv~~~--~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
..|++..+. ....+ . . ..-.++..+. .|..+++++..+.+ ++. ...+|.+|+|+|..
T Consensus 210 ----k~v~~~~~~~~~~~~~--~--------~-~~~~~~~~~~--~i~~~~e~~~~~~~--~~~--~~~~D~ii~ctgy~ 268 (448)
T KOG1399|consen 210 ----KEVHLSVVSPKVHVEP--P--------E-ILGENLWQVP--SIKSFTEDGSVFEK--GGP--VERVDRIIFCTGYK 268 (448)
T ss_pred ----cCcceeeecccccccc--c--------c-eeecceEEcc--ccccccCcceEEEc--Cce--eEEeeeEEEeeeeE
Confidence 345555431 00000 0 0 0011233332 27788888877765 244 37899999999964
Q ss_pred C
Q 007975 335 P 335 (583)
Q Consensus 335 ~ 335 (583)
-
T Consensus 269 y 269 (448)
T KOG1399|consen 269 Y 269 (448)
T ss_pred e
Confidence 3
No 90
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.56 E-value=7.4e-14 Score=147.50 Aligned_cols=300 Identities=13% Similarity=0.135 Sum_probs=156.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcC-CCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLN-NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~-~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
...++|+||||||||++||.+|. +.|++|+|+|+.+..++. +.+.+++.....+.+...+...+...+ ++|. +.+
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL-vR~GVaPdh~~~k~v~~~f~~~~~~~~--v~f~-gnv 112 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL-IRYGVAPDHIHVKNTYKTFDPVFLSPN--YRFF-GNV 112 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE-EEEeCCCCCccHHHHHHHHHHHHhhCC--eEEE-eee
Confidence 45689999999999999999764 679999999999887543 334455544444455666666565554 5554 211
Q ss_pred EEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCC----------Ccccc--CcccCCHHHHHHHHHH
Q 007975 135 FKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP----------GVEEN--CNFLKEVEDAQRIRRN 202 (583)
Q Consensus 135 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ip----------G~~~~--~~~~~~~~~a~~l~~~ 202 (583)
.+. ..++++.. .-.||.||+|+|+.+..++++ |.+.. .....+..+.....+.
T Consensus 113 -~VG---~Dvt~eeL-----------~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg 177 (506)
T PTZ00188 113 -HVG---VDLKMEEL-----------RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNN 177 (506)
T ss_pred -Eec---CccCHHHH-----------HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecC
Confidence 111 12222211 337999999999986433311 32100 0011111111000000
Q ss_pred HHHHH---HH-cCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhh-----hc-CCCC--CCceEEEEecCC
Q 007975 203 VIESF---EK-ASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFK-----LY-PKVK--DSVKITLLEAAD 270 (583)
Q Consensus 203 l~~~~---~~-~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~-----~~-p~~~--~~~~Vtlv~~~~ 270 (583)
-.+.. .. +.+... ....+++|||.|++++++|..|..-. +.+.+ .+ ..++ .-.+|++|-|..
T Consensus 178 ~p~~~~~~~~~ayL~p~-----~~~~~vvVIG~GNVAlDvARiL~~~~-d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 178 MYNDVRCKAVDNYLNSF-----ENFTTSIIIGNGNVSLDIARILIKSP-DDLSKTDISSDYLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred CCCcccccccccccccc-----CCCCcEEEECCCchHHHHHHHHccCH-HHhhcCCCcHHHHHHHHhCCCcEEEEEEecC
Confidence 00000 00 000000 03348999999999999999874321 11111 00 0000 113466654432
Q ss_pred cc--------------cCc---------c------cH-----H--------HHHHHHHHHH----------hCCCEEEeC
Q 007975 271 HI--------------LNM---------F------DK-----R--------ITAFAEEKFS----------RDGIDVKLG 298 (583)
Q Consensus 271 ~i--------------l~~---------~------~~-----~--------~~~~~~~~L~----------~~GV~v~~~ 298 (583)
-. ++. + +. . ..+.+.+..+ .+-+.+++.
T Consensus 252 p~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~ 331 (506)
T PTZ00188 252 FWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFY 331 (506)
T ss_pred HHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEcc
Confidence 10 000 0 00 0 1112222221 134666777
Q ss_pred CeEEEEeC--C---eEEEEEc--------CCCeeEEeecceEEEccCCCCchhHHHHHHHhCcCCCcceEeCCCCcc-CC
Q 007975 299 SMVVKVTD--K---EIFTKVR--------GNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQTNRRALATDEWLRV-EG 364 (583)
Q Consensus 299 ~~V~~v~~--~---~v~~~~~--------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~~~g~i~Vd~~l~~-~~ 364 (583)
..+++|.+ + ++++... .+|+..+++||+|+-++|++..|.. . ++.+ +. +.+. ..++ ..
T Consensus 332 ~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g----~pFd-~~-~~n~-~grv~~~ 403 (506)
T PTZ00188 332 FEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-E----NLYN-QS-VQMF-KEDIGQH 403 (506)
T ss_pred CCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-C----CCcc-cc-CCCC-CCcccCC
Confidence 77777753 2 2444321 2577778999999999999988754 2 2333 21 2222 1221 13
Q ss_pred CCCEEEcCcccccccchhhhHHHH
Q 007975 365 SDSIYALGDCATVNQRRVMEDIAA 388 (583)
Q Consensus 365 ~~~VyAiGD~a~~~~~~~~~~~~~ 388 (583)
.|++|+.|-+...|..-+.+.+.+
T Consensus 404 ~~g~Y~~GWiKrGP~GvIgtn~~d 427 (506)
T PTZ00188 404 KFAIFKAGWFDKGPKGNIASQILN 427 (506)
T ss_pred CCCcEEeeecCcCCCceeccCccc
Confidence 699999999998876554444333
No 91
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.1e-13 Score=148.29 Aligned_cols=176 Identities=18% Similarity=0.237 Sum_probs=116.2
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCe-EEEEcCCCCCCCCCchhh-----------------hcc---ccCCCc-c
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYD-VQVISPRNYFAFTPLLPS-----------------VTC---GTVEAR-S 111 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~-Vtlie~~~~~~~~p~l~~-----------------~~~---g~~~~~-~ 111 (583)
..++.++|+|||||++||++|..|++.|.+ ++|+|++...+.++.... ... ...... .
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 345678999999999999999999999998 999999975554321110 000 011111 2
Q ss_pred cchhHHHHHHhCCCc--EEEEEeEEEEEecCC--CE--EEEecCCCCCCCCCceEEeecCEEEEccCC--CCCCCCCCCc
Q 007975 112 IVEPVRNIVRKKNVD--ICFWEAECFKIDAEN--KK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGA--RANTFNTPGV 183 (583)
Q Consensus 112 i~~~~~~~~~~~~i~--v~~~~~~v~~id~~~--~~--v~~~~~~~~~~~~~~~~~i~yD~LViAtG~--~~~~~~ipG~ 183 (583)
+...+.+.++.+++. ++| +..|+.++.+. +. |+++.+. .. ++.+|+||+|||. .|+.|.++|.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~-~~~v~~~~~~~~~~~w~V~~~~~~-------~~-~~~a~~vV~ATG~~~~P~iP~~~G~ 154 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRF-NTRVEVADWDEDTKRWTVTTSDGG-------TG-ELTADFVVVATGHLSEPYIPDFAGL 154 (443)
T ss_pred HHHHHHHHHHHcCceeEEEc-ccceEEEEecCCCCeEEEEEcCCC-------ee-eEecCEEEEeecCCCCCCCCCCCCc
Confidence 455666777777642 332 33444455443 33 4444332 11 2779999999995 5888999998
Q ss_pred cccCcc-cCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce
Q 007975 184 EENCNF-LKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK 262 (583)
Q Consensus 184 ~~~~~~-~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~ 262 (583)
++..-. +++ . . .+....-++|+|+|||+|.||++++.+|.+. +.+
T Consensus 155 ~~f~g~~~HS----~-------------~---~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~--------------ga~ 200 (443)
T COG2072 155 DEFKGRILHS----A-------------D---WPNPEDLRGKRVLVIGAGASAVDIAPELAEV--------------GAS 200 (443)
T ss_pred cCCCceEEch----h-------------c---CCCccccCCCeEEEECCCccHHHHHHHHHhc--------------CCe
Confidence 753211 111 0 1 1223346789999999999999999999986 469
Q ss_pred EEEEecCCcc
Q 007975 263 ITLLEAADHI 272 (583)
Q Consensus 263 Vtlv~~~~~i 272 (583)
||++.|.+..
T Consensus 201 vt~~qRs~~~ 210 (443)
T COG2072 201 VTLSQRSPPH 210 (443)
T ss_pred eEEEecCCCc
Confidence 9999998754
No 92
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=8.1e-12 Score=126.29 Aligned_cols=283 Identities=13% Similarity=0.129 Sum_probs=168.5
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCC-CCeEEEEcCCCCCCCCCc--hhhh------ccccCC---Cc------------
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFTPL--LPSV------TCGTVE---AR------------ 110 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~-g~~Vtlie~~~~~~~~p~--l~~~------~~g~~~---~~------------ 110 (583)
.+...+++.||-||.-|+.|..|... +.++..+||.+.|.|.|. ++.. ....+. |.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 34568999999999999999999854 478999999999988752 2211 111111 11
Q ss_pred -----------------ccchhHHHHHHhCCCcEEEEEeEEE---EEecCCCEEEEecCCCCCCCCCceEEeecCEEEEc
Q 007975 111 -----------------SIVEPVRNIVRKKNVDICFWEAECF---KIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIA 170 (583)
Q Consensus 111 -----------------~i~~~~~~~~~~~~i~v~~~~~~v~---~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViA 170 (583)
+..++.+-..... -.++| ..+|+ .+|.+.......... + ...+.+..|||+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf-g~~V~~i~~~~~d~~~~~~~~t~-----~--~~~y~ar~lVlg 152 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRF-GEEVTDISSLDGDAVVRLFVVTA-----N--GTVYRARNLVLG 152 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-Ccccc-CCeeccccccCCcceeEEEEEcC-----C--CcEEEeeeEEEc
Confidence 0111111111222 24554 67777 455444332111111 1 127899999999
Q ss_pred cCCCCCCCC-CCCcc-ccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHHHHhhhH
Q 007975 171 MGARANTFN-TPGVE-ENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAELHDFVDE 248 (583)
Q Consensus 171 tG~~~~~~~-ipG~~-~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~ 248 (583)
+|.+|..|+ +..+. +.++. + .++.++.. +.....+|.|||||-+|.|+-..|..-.
T Consensus 153 ~G~~P~IP~~f~~l~~~~vfH--s----s~~~~~~~--------------~~~~~~~V~ViG~GQSAAEi~~~Ll~~~-- 210 (436)
T COG3486 153 VGTQPYIPPCFRSLIGERVFH--S----SEYLERHP--------------ELLQKRSVTVIGSGQSAAEIFLDLLNSQ-- 210 (436)
T ss_pred cCCCcCCChHHhCcCccceee--h----HHHHHhhH--------------HhhcCceEEEEcCCccHHHHHHHHHhCC--
Confidence 999988763 12221 22222 1 11111111 1122235999999999999987775432
Q ss_pred hHhhhcCCCCCCceEEEEecCCcccCc---------ccHHHHHHH------------------------------HHHH-
Q 007975 249 DLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAFA------------------------------EEKF- 288 (583)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~il~~---------~~~~~~~~~------------------------------~~~L- 288 (583)
+. ...++.+|.|+..++|+ |.|+..++. -+.|
T Consensus 211 ------~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY 282 (436)
T COG3486 211 ------PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLY 282 (436)
T ss_pred ------CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 11 23478899999887764 222222211 1111
Q ss_pred ------HhCCCEEEeCCeEEEEeCCe---EE--EEEcCCCeeEEeecceEEEccCCCC-ch-hHHHHHHHhCcCCCcceE
Q 007975 289 ------SRDGIDVKLGSMVVKVTDKE---IF--TKVRGNGETSSMPYGMVVWSTGIAP-HA-IIKDFMKQVGQTNRRALA 355 (583)
Q Consensus 289 ------~~~GV~v~~~~~V~~v~~~~---v~--~~~~~~G~~~~i~~D~vI~a~G~~~-~p-~~~~l~~~~~~~~~g~i~ 355 (583)
.+..|.++.++.|..++..+ +. +....+|+.+++++|.||+|||... .| .+..+.+.+-.+++|.+.
T Consensus 283 ~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~ 362 (436)
T COG3486 283 EQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLV 362 (436)
T ss_pred HHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeE
Confidence 13468899999999997533 44 3444457777899999999999873 33 222233333347889999
Q ss_pred eCCCCccCCCC----CEEEcCcccc
Q 007975 356 TDEWLRVEGSD----SIYALGDCAT 376 (583)
Q Consensus 356 Vd~~l~~~~~~----~VyAiGD~a~ 376 (583)
|+.++++...+ .||+-|=+..
T Consensus 363 I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 363 IGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred ecCceeeecCCCCcceEEEeccccc
Confidence 99987764322 6999887755
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.44 E-value=5.6e-13 Score=141.01 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=97.0
Q ss_pred EEEcCChhHHHHH-HHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe
Q 007975 227 VIVGGGPTGVEFA-AELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT 305 (583)
Q Consensus 227 vVVGgG~tgvE~A-~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~ 305 (583)
+|++.+..|+|.+ ..+.++... -+++|++++..+..++.+ ++.+.+.+.|++.|++++++++|++++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 6788999999999 555433211 168999999999998874 788999999999999999999999986
Q ss_pred --CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHH----HHHHHh-C--c---------------C----CCcceEeC
Q 007975 306 --DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIK----DFMKQV-G--Q---------------T----NRRALATD 357 (583)
Q Consensus 306 --~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~----~l~~~~-~--~---------------~----~~g~i~Vd 357 (583)
++++......+|+...+.+|.||+|+|.....-+. .+-+.+ + + . .+-++.||
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 34454432234554569999999999954322110 000000 0 0 0 01246677
Q ss_pred CCCcc------CCCCCEEEcCccccccc
Q 007975 358 EWLRV------EGSDSIYALGDCATVNQ 379 (583)
Q Consensus 358 ~~l~~------~~~~~VyAiGD~a~~~~ 379 (583)
++||. +..+|+||+|++...++
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d 394 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYD 394 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCc
Confidence 77764 24799999999988754
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.27 E-value=4.5e-11 Score=96.74 Aligned_cols=68 Identities=29% Similarity=0.573 Sum_probs=64.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEE
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKV 304 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v 304 (583)
+++|||||++|+|+|..+..+ +.+|+++++.+.+++.+++.+.+.+++.|+++||++++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--------------g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--------------GKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--------------CcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 589999999999999999886 579999999999999999999999999999999999999999999
Q ss_pred eC
Q 007975 305 TD 306 (583)
Q Consensus 305 ~~ 306 (583)
+.
T Consensus 67 ~~ 68 (80)
T PF00070_consen 67 EK 68 (80)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 95
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=8.7e-07 Score=92.68 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=96.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCC---CCCeEEEEcCCCCCCC----CCchh-----------------------hhcccc-
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN---PSYDVQVISPRNYFAF----TPLLP-----------------------SVTCGT- 106 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~---~g~~Vtlie~~~~~~~----~p~l~-----------------------~~~~g~- 106 (583)
+++|.|||+|++|+..|..|.+ ....|+|+|+.+.++. ....+ .+..+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4799999999999999999872 2233999999866532 11111 011111
Q ss_pred ---CCC------------c-----ccchhHHHHHHhCCC-cEEEEEeEEEEEecC--CCEEEEecCCCCCCCCCceEEee
Q 007975 107 ---VEA------------R-----SIVEPVRNIVRKKNV-DICFWEAECFKIDAE--NKKVYCRSSQNTNLNGKEEFCMD 163 (583)
Q Consensus 107 ---~~~------------~-----~i~~~~~~~~~~~~i-~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~i~ 163 (583)
.++ + .+.+.+..+++.... .+.+++.+++++... .....+....+ ....
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~ 152 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEI 152 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceee
Confidence 000 0 011112223332221 377889999888777 22222222221 1678
Q ss_pred cCEEEEccCCCCCCCCC-----CCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHH
Q 007975 164 YDYLVIAMGARANTFNT-----PGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEF 238 (583)
Q Consensus 164 yD~LViAtG~~~~~~~i-----pG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~ 238 (583)
+|-+|+|||..+...+. +|... .+.+...+.. + +.....-+|+|+|.|.+-++.
T Consensus 153 ad~~Vlatgh~~~~~~~~~~~~~~~~~---~ia~~~~~~~-------------l-----d~v~~~drVli~GsgLt~~D~ 211 (474)
T COG4529 153 ADIIVLATGHSAPPADPAARDLKGSPR---LIADPYPANA-------------L-----DGVDADDRVLIVGSGLTSIDQ 211 (474)
T ss_pred eeEEEEeccCCCCCcchhhhccCCCcc---eeccccCCcc-------------c-----ccccCCCceEEecCCchhHHH
Confidence 99999999987544332 11111 1111111100 0 011222379999999999999
Q ss_pred HHHHHHhhhHhHhhhcCCCCCCceEEEEecCC
Q 007975 239 AAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (583)
Q Consensus 239 A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~ 270 (583)
...+.+... ..+||++.|..
T Consensus 212 v~~l~~~gh------------~g~It~iSRrG 231 (474)
T COG4529 212 VLVLRRRGH------------KGPITAISRRG 231 (474)
T ss_pred HHHHhccCC------------ccceEEEeccc
Confidence 998887542 46788888764
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=101.74 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC------------------------C----chh-------
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT------------------------P----LLP------- 100 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~------------------------p----~l~------- 100 (583)
++..+|+|||||+|||.||..+++.|++|+|||+.+.++-. | .++
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 35689999999999999999999999999999987543110 0 000
Q ss_pred ----------------hhccccCCC-----cccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCce
Q 007975 101 ----------------SVTCGTVEA-----RSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEE 159 (583)
Q Consensus 101 ----------------~~~~g~~~~-----~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~ 159 (583)
.-..|.+-+ +.+.+-+..-+++.++.++ .+.+|.+|+.++....+....+
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~-~~~~v~~v~~~~~~f~l~t~~g-------- 151 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIR-TRSRVSSVEKDDSGFRLDTSSG-------- 151 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEE-ecceEEeEEecCceEEEEcCCC--------
Confidence 000111112 2345555666777887775 6899999998875555554331
Q ss_pred EEeecCEEEEccCCC
Q 007975 160 FCMDYDYLVIAMGAR 174 (583)
Q Consensus 160 ~~i~yD~LViAtG~~ 174 (583)
.++.+|.||||||..
T Consensus 152 ~~i~~d~lilAtGG~ 166 (408)
T COG2081 152 ETVKCDSLILATGGK 166 (408)
T ss_pred CEEEccEEEEecCCc
Confidence 179999999999943
No 97
>PRK09897 hypothetical protein; Provisional
Probab=98.76 E-value=1.4e-07 Score=102.90 Aligned_cols=183 Identities=15% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCC----CCC------ch---------------hhhcc------
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFA----FTP------LL---------------PSVTC------ 104 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~----~~p------~l---------------~~~~~------ 104 (583)
+++|+|||||++|+++|.+|.+ ...+|+|||++...+ |.+ ++ ..+..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 4799999999999999999974 346899999976543 111 00 00100
Q ss_pred -------------ccCCCcc-cchhHH----HH---HHhCCCcEEEE-EeEEEEEecCCCEEEEecCCCCCCCCCceEEe
Q 007975 105 -------------GTVEARS-IVEPVR----NI---VRKKNVDICFW-EAECFKIDAENKKVYCRSSQNTNLNGKEEFCM 162 (583)
Q Consensus 105 -------------g~~~~~~-i~~~~~----~~---~~~~~i~v~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i 162 (583)
+...++. .-.+++ .+ +...++.+.+. ..+|++|+.....+.+.... + ...+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~-----g--g~~i 153 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ-----D--LPSE 153 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC-----C--CeEE
Confidence 1111111 111122 22 22333234443 56899998877766665322 1 1278
Q ss_pred ecCEEEEccCCCCCCCCCCCccccCcccCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHhccceEEEEcCChhHHHHHHHH
Q 007975 163 DYDYLVIAMGARANTFNTPGVEENCNFLKEVEDAQRIRRNVIESFEKASLPNLSDEERKRILHFVIVGGGPTGVEFAAEL 242 (583)
Q Consensus 163 ~yD~LViAtG~~~~~~~ipG~~~~~~~~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~tgvE~A~~l 242 (583)
.+|+||+|+|..+... .++.. .++.+..+... . +. ....+|+|+|.|.+.++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~~---~yi~~pw~~~~-----~-----~~---------i~~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEATR---TYFPSPWSGLM-----E-----AK---------VDACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhhc---cccCCCCcchh-----h-----cC---------CCCCeEEEECCCHHHHHHHHHH
Confidence 9999999999753211 11111 11111111100 0 00 0124999999999999999999
Q ss_pred HHhhhHhHhh--------hcCCCCCCceEEEEecCCc
Q 007975 243 HDFVDEDLFK--------LYPKVKDSVKITLLEAADH 271 (583)
Q Consensus 243 ~~~~~~~~~~--------~~p~~~~~~~Vtlv~~~~~ 271 (583)
..... .+.+ .|..-.+..+|+++.|...
T Consensus 211 t~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 211 AIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HhcCC-ceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 85421 1111 1111113568888887654
No 98
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.72 E-value=3e-07 Score=95.76 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=56.8
Q ss_pred HhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceE
Q 007975 250 LFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMV 327 (583)
Q Consensus 250 ~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~v 327 (583)
+.+.+|.+.+...-.+.......+ .+..+.+.+.+.+++.|++++.+++|++++ ++.++-..+.+|+ +.+|.|
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~---i~ad~v 195 (358)
T PF01266_consen 121 LRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE---IRADRV 195 (358)
T ss_dssp HHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE---EEECEE
T ss_pred hhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc---ccccee
Confidence 344456554444555555444332 246788889999999999999999999986 5666623334454 999999
Q ss_pred EEccCCCCchhHHHHHHHhC
Q 007975 328 VWSTGIAPHAIIKDFMKQVG 347 (583)
Q Consensus 328 I~a~G~~~~p~~~~l~~~~~ 347 (583)
|+|+|.. +..++..++
T Consensus 196 V~a~G~~----s~~l~~~~~ 211 (358)
T PF01266_consen 196 VLAAGAW----SPQLLPLLG 211 (358)
T ss_dssp EE--GGG----HHHHHHTTT
T ss_pred Eeccccc----ceeeeeccc
Confidence 9999942 334555554
No 99
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.70 E-value=5.8e-08 Score=101.92 Aligned_cols=89 Identities=19% Similarity=0.372 Sum_probs=58.3
Q ss_pred HhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecc
Q 007975 248 EDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYG 325 (583)
Q Consensus 248 ~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D 325 (583)
+.+.+.-|.+.++..--+......+.. ...+...+.+.++++|++++++++|+.++. +++++..+.+|+++ ++|+
T Consensus 125 ~~i~~~eP~l~~~~~aal~~p~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~-~~ak 201 (429)
T COG0579 125 EEIKELEPLLNEGAVAALLVPSGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET-LEAK 201 (429)
T ss_pred HHHHhhCccccccceeeEEcCCCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEE-EEee
Confidence 344455566554422222222222221 235677788888889999999999999964 44666666678765 9999
Q ss_pred eEEEccCCCCchhH
Q 007975 326 MVVWSTGIAPHAII 339 (583)
Q Consensus 326 ~vI~a~G~~~~p~~ 339 (583)
.||.|+|..+.++.
T Consensus 202 ~Vin~AGl~Ad~la 215 (429)
T COG0579 202 FVINAAGLYADPLA 215 (429)
T ss_pred EEEECCchhHHHHH
Confidence 99999996555433
No 100
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.68 E-value=1.4e-07 Score=99.76 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred EecCCcccCcc--cHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCe-EEEEEcCCCeeEEeecceEEEccCCCCchhH-
Q 007975 266 LEAADHILNMF--DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAII- 339 (583)
Q Consensus 266 v~~~~~il~~~--~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~- 339 (583)
++...++.|.- ...+.+.+.+.+++.||+|+++++|.+++ +++ ..+.. ++++. +.+|.||+|+|-.+-|.+
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~-~~~~~--~~a~~vILAtGG~S~p~~G 171 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT-KNGGE--YEADAVILATGGKSYPKTG 171 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE-TTTEE--EEESEEEE----SSSGGGT
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec-cCccc--ccCCEEEEecCCCCccccC
Confidence 44556666643 45677888999999999999999999995 556 34433 34554 999999999997666654
Q ss_pred -----HHHHHHhCc
Q 007975 340 -----KDFMKQVGQ 348 (583)
Q Consensus 340 -----~~l~~~~~~ 348 (583)
-.+++++|.
T Consensus 172 S~G~gy~~a~~lGh 185 (409)
T PF03486_consen 172 SDGSGYRIAKKLGH 185 (409)
T ss_dssp -SSHHHHHHHHTT-
T ss_pred CCcHHHHHHHHCCC
Confidence 234566653
No 101
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.64 E-value=2.6e-06 Score=91.12 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
|++|+|||||+.|+++|++|++.|++|+|+|+++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36999999999999999999999999999999864
No 102
>PLN02463 lycopene beta cyclase
Probab=98.63 E-value=1.9e-07 Score=100.26 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc-------hh-----hhc----cc--------------
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL-------LP-----SVT----CG-------------- 105 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~-------l~-----~~~----~g-------------- 105 (583)
...++|+|||||+||+++|..|++.|++|+|||+++...+... +. ... ..
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 3457999999999999999999999999999999764332110 00 000 00
Q ss_pred ----cCCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 106 ----TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 106 ----~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
.++...+...+.+.+...+ +++..++|++|+..+..+.+...++ .++.+|+||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~G--V~~~~~~V~~I~~~~~~~~V~~~dG--------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANG--VQFHQAKVKKVVHEESKSLVVCDDG--------VKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcC--CEEEeeEEEEEEEcCCeEEEEECCC--------CEEEcCEEEECcCCCcC
Confidence 0001111122333344556 5567889999987766544332221 17999999999998754
No 103
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.58 E-value=7.1e-06 Score=86.33 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=76.5
Q ss_pred CceEEEEecCCcccCc-ccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC-C
Q 007975 260 SVKITLLEAADHILNM-FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA-P 335 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~-~ 335 (583)
++.|..+--.| |. .+.++.+.+.+.++++|++++.+++|.+++ ++.++...+.++....+.+|.+|+|+|.. .
T Consensus 247 g~~v~E~ptlP---PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 247 GLTLCELPTMP---PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred CCCEEeCCCCC---CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcC
Confidence 45666653332 33 356888999999999999999999999975 45555443233422249999999999976 4
Q ss_pred chhHHHHH---HH---hCc---------------C----CCcceEeCCCCccC----CCCCEEEcCccccccc
Q 007975 336 HAIIKDFM---KQ---VGQ---------------T----NRRALATDEWLRVE----GSDSIYALGDCATVNQ 379 (583)
Q Consensus 336 ~p~~~~l~---~~---~~~---------------~----~~g~i~Vd~~l~~~----~~~~VyAiGD~a~~~~ 379 (583)
..+...+. +. +.+ + .+-++.||++||.. -.+|+||+|-+....+
T Consensus 324 ~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d 396 (419)
T TIGR03378 324 NGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYD 396 (419)
T ss_pred HHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCC
Confidence 44332210 11 111 0 11247899999841 2789999999987654
No 104
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.57 E-value=1.3e-07 Score=105.24 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=63.3
Q ss_pred ceEEEEcCCh--hHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcc--------------cHHHHHHHHHH
Q 007975 224 LHFVIVGGGP--TGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF--------------DKRITAFAEEK 287 (583)
Q Consensus 224 ~~vvVVGgG~--tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~--------------~~~~~~~~~~~ 287 (583)
.++.|+|+|+ ++.|++..+... +.+++++.+.+++++.+ ...+.+.+.+.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~ 223 (574)
T PRK12842 158 KTITFIGMMFNSSNADLKHFFNAT--------------RSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKS 223 (574)
T ss_pred ccccccceecccchHHHHHHHhhc--------------cchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHH
Confidence 3788999988 788888777654 23445444444333322 24567777888
Q ss_pred HHhCCCEEEeCCeEEEEe--CCeE---EEEEcCCCeeEEeecc-eEEEccCCC
Q 007975 288 FSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYG-MVVWSTGIA 334 (583)
Q Consensus 288 L~~~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D-~vI~a~G~~ 334 (583)
+++.||+|++++.|+++. ++.| .+.+ .+++ .++.++ .||+|+|-.
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~-~~~~-~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGGRVVGARVID-AGGE-RRITARRGVVLACGGF 274 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCCEEEEEEEEc-CCce-EEEEeCCEEEEcCCCc
Confidence 899999999999999985 3433 3332 2233 357786 799999943
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.56 E-value=2.4e-07 Score=93.96 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=69.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc----hh---hh-------------------ccc-------
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL----LP---SV-------------------TCG------- 105 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~----l~---~~-------------------~~g------- 105 (583)
++|+|||||++|+++|..|++.|++|+|||++......+. .+ .. ..+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 4899999999999999999999999999999875432110 00 00 000
Q ss_pred ------cCCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC
Q 007975 106 ------TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (583)
Q Consensus 106 ------~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~ 175 (583)
.++...+...+.+.+.+.++++ +...+|+.+..+++.+.+.... +...+.+|++|+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~-~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL-RLGTTVLDVEIHDDRVVVIVRG-------GEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE-EeCcEEeeEEEeCCEEEEEEcC-------ccEEEEeCEEEECCCcch
Confidence 0111122233455556667555 3577888887666654432211 112789999999999864
No 106
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=1.1e-07 Score=105.33 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=65.9
Q ss_pred ceEEEEcCChhHHHHHHH-------HHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEE
Q 007975 224 LHFVIVGGGPTGVEFAAE-------LHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVK 296 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~-------l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~ 296 (583)
+.++++|++..++|.+.. +.++. .+|+++...+..+..++..+...+.+.+++.||+++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~ 226 (557)
T PRK07843 161 LNMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVL 226 (557)
T ss_pred ccccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEE
Confidence 378899999999998754 33332 355555555545455667788888899999999999
Q ss_pred eCCeEEEEeC--CeE---EEEEcCCCeeEEeecc-eEEEccC
Q 007975 297 LGSMVVKVTD--KEI---FTKVRGNGETSSMPYG-MVVWSTG 332 (583)
Q Consensus 297 ~~~~V~~v~~--~~v---~~~~~~~G~~~~i~~D-~vI~a~G 332 (583)
++++++++.. +.| .+. .+|+...+.++ .||+|+|
T Consensus 227 ~~t~v~~l~~~~g~v~Gv~~~--~~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 227 LNTPLTDLYVEDGRVTGVHAA--ESGEPQLIRARRGVILASG 266 (557)
T ss_pred eCCEEEEEEEeCCEEEEEEEE--eCCcEEEEEeceeEEEccC
Confidence 9999999853 333 332 24655568885 6888766
No 107
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.49 E-value=8.8e-06 Score=88.40 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=36.9
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCC----CCCeEEEEcCCCCCCCCC
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~----~g~~Vtlie~~~~~~~~p 97 (583)
...+++|+|||||+|||+||.+|.+ +|.+|+|+|+++..++..
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 3446899999999999999999986 478999999999877753
No 108
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.49 E-value=6.1e-06 Score=86.80 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCCcce
Q 007975 278 KRITAFAEEKFSRD-GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRAL 354 (583)
Q Consensus 278 ~~~~~~~~~~L~~~-GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~g~i 354 (583)
..+...+.+.+.++ |++++.+++|++++.+.|+. .+|+ +.+|.||+|+|.....+...+...+++ ..+|.+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t---~~g~---i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~ 217 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRT---SRGD---VHADQVFVCPGADFETLFPELFAASGVRRCKLQM 217 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEe---CCCc---EEeCEEEECCCCChhhhCcchhhccCcceEEEEe
Confidence 45666677777765 99999999999998764433 3364 789999999996544433222233344 234544
No 109
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.48 E-value=7e-06 Score=87.95 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
..+...+.+.++++|++++++++|++++. +.+....+.+++ +.+|.||.|+|....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~---~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGV---ITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcE---EeCCEEEECCCcchH
Confidence 45667777888899999999999999863 444323323343 899999999996443
No 110
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.45 E-value=8.4e-07 Score=96.31 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHh----CC--CEEEeCCeEEEEeC--Ce-EEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc
Q 007975 278 KRITAFAEEKFSR----DG--IDVKLGSMVVKVTD--KE-IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (583)
Q Consensus 278 ~~~~~~~~~~L~~----~G--V~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~ 348 (583)
..+...+.+.+++ .| ++++++++|++++. +. +.+. +.+|+ +.+|.||+|+|.... .++..+|+
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~-T~~G~---i~A~~VVvaAG~~S~----~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIH-TNRGE---IRARFVVVSACGYSL----LFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEE-ECCCE---EEeCEEEECcChhHH----HHHHHhCC
Confidence 3677777788888 77 88999999999964 33 3343 34463 999999999994433 34444554
No 111
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.45 E-value=4.3e-06 Score=89.89 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=35.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
.+++|+|||||+||++||..|++.|++|+|||+.++...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 458999999999999999999999999999999876543
No 112
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.45 E-value=6.1e-07 Score=72.40 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=60.6
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEEec
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKIDA 139 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~ 139 (583)
+|+|||||+.|+.+|..|++.|.+||||++++.+. +. ...++...+.+.+++.++++. ....+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~---------~~~~~~~~~~~~l~~~gV~v~-~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PG---------FDPDAAKILEEYLRKRGVEVH-TNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TT---------SSHHHHHHHHHHHHHTTEEEE-ESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hh---------cCHHHHHHHHHHHHHCCCEEE-eCCEEEEEEE
Confidence 69999999999999999999999999999998754 11 122456677888889997775 4888999988
Q ss_pred CCCE--EEEec
Q 007975 140 ENKK--VYCRS 148 (583)
Q Consensus 140 ~~~~--v~~~~ 148 (583)
++.. |++++
T Consensus 69 ~~~~~~V~~~~ 79 (80)
T PF00070_consen 69 DGDGVEVTLED 79 (80)
T ss_dssp ETTSEEEEEET
T ss_pred eCCEEEEEEec
Confidence 7654 54443
No 113
>PRK06847 hypothetical protein; Provisional
Probab=98.44 E-value=1e-06 Score=93.01 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=70.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-------C----------chhhhc--------------cc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT-------P----------LLPSVT--------------CG 105 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~-------p----------~l~~~~--------------~g 105 (583)
++++|+|||||++|+++|..|++.|++|+|+|+++..... | +...+. .|
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3679999999999999999999999999999987642110 0 000000 00
Q ss_pred c----C----------------CCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecC
Q 007975 106 T----V----------------EARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYD 165 (583)
Q Consensus 106 ~----~----------------~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD 165 (583)
. . ...++...+.+.+...++++. ...+|+.++.+...+.+.... + .++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~-~~~~v~~i~~~~~~~~v~~~~-----g---~~~~ad 153 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVR-LGTTVTAIEQDDDGVTVTFSD-----G---TTGRYD 153 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEE-eCCEEEEEEEcCCEEEEEEcC-----C---CEEEcC
Confidence 0 0 001122234444555665553 466888888766655444322 1 178999
Q ss_pred EEEEccCCCCC
Q 007975 166 YLVIAMGARAN 176 (583)
Q Consensus 166 ~LViAtG~~~~ 176 (583)
.||.|+|..+.
T Consensus 154 ~vI~AdG~~s~ 164 (375)
T PRK06847 154 LVVGADGLYSK 164 (375)
T ss_pred EEEECcCCCcc
Confidence 99999998653
No 114
>PRK10015 oxidoreductase; Provisional
Probab=98.41 E-value=3.4e-06 Score=90.64 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=35.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
.+++|+|||||+||++||+.|++.|++|+|||+.++.+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 358999999999999999999999999999999987543
No 115
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.41 E-value=5.5e-07 Score=93.54 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=64.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEc-CCCCCCCCCchhh---hccc------------------------------
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVIS-PRNYFAFTPLLPS---VTCG------------------------------ 105 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie-~~~~~~~~p~l~~---~~~g------------------------------ 105 (583)
||+|||||+||++||..+++.|++|+|+. +.+.+...+..+. ...+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 69999999999999999999999999993 3333333221111 1000
Q ss_pred ----------cCCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEE---EecCCCCCCCCCceEEeecCEEEEccC
Q 007975 106 ----------TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVY---CRSSQNTNLNGKEEFCMDYDYLVIAMG 172 (583)
Q Consensus 106 ----------~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~---~~~~~~~~~~~~~~~~i~yD~LViAtG 172 (583)
.++...+...+++.+.... ++.+++++|++|..+++.|. +.++ ..+.+|.+|+|||
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~-nl~i~~~~V~~l~~e~~~v~GV~~~~g----------~~~~a~~vVlaTG 149 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHP-NLTIIQGEVTDLIVENGKVKGVVTKDG----------EEIEADAVVLATG 149 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTST-TEEEEES-EEEEEECTTEEEEEEETTS----------EEEEECEEEE-TT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCC-CeEEEEcccceEEecCCeEEEEEeCCC----------CEEecCEEEEecc
Confidence 0111123334566666644 57788999999998877653 3322 2899999999999
Q ss_pred C
Q 007975 173 A 173 (583)
Q Consensus 173 ~ 173 (583)
.
T Consensus 150 t 150 (392)
T PF01134_consen 150 T 150 (392)
T ss_dssp T
T ss_pred c
Confidence 8
No 116
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.40 E-value=8.8e-07 Score=88.19 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-----chhhhc--------------------cc--cCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-----LLPSVT--------------------CG--TVEA 109 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p-----~l~~~~--------------------~g--~~~~ 109 (583)
...+|+|||||+||++||..|++.|++|+|||+++..+... +.+... .+ ..+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 35799999999999999999999999999999987654321 001000 00 0112
Q ss_pred cccchhHHHHHHhCCCcEEEEEeEEEEEecCCC-EEE---EecCC-CCCCCCCceEEeecCEEEEccCCC
Q 007975 110 RSIVEPVRNIVRKKNVDICFWEAECFKIDAENK-KVY---CRSSQ-NTNLNGKEEFCMDYDYLVIAMGAR 174 (583)
Q Consensus 110 ~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~-~v~---~~~~~-~~~~~~~~~~~i~yD~LViAtG~~ 174 (583)
.++...+.+.+.+.++++ +...+|+++..++. .+. +.... ...-...+...+.++++|+|+|..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I-~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI-FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEE-EcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 233344555566677655 34667877765333 221 11100 000000112479999999999975
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.39 E-value=1.3e-06 Score=92.77 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=66.3
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC---c----hh-----hhc----cc--------c---------
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP---L----LP-----SVT----CG--------T--------- 106 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p---~----l~-----~~~----~g--------~--------- 106 (583)
||+|||||+||+++|..|++.|++|+|||+++..++.. . +. ... .+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 69999999999999999999999999999886543311 0 00 000 00 0
Q ss_pred -CCCcccchhHHHHHHhCCCcEEEEEeEEEEEecC-CCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC
Q 007975 107 -VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAE-NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (583)
Q Consensus 107 -~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~-~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~ 175 (583)
++...+...+.+.+.+.+ +.++.++|..++.+ ...+.+.... + .++.+++||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~g--v~~~~~~v~~i~~~~~~~~~v~~~~-----g---~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGG--VLWLERKAIHAEADGVALSTVYCAG-----G---QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcC--cEEEccEEEEEEecCCceeEEEeCC-----C---CEEEeCEEEECCCCch
Confidence 000111222334445555 45668889888766 3333332221 1 1799999999999876
No 118
>PLN02697 lycopene epsilon cyclase
Probab=98.38 E-value=1.4e-06 Score=95.09 Aligned_cols=108 Identities=16% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC-----CCCchh-----hhcc------------cc-------
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA-----FTPLLP-----SVTC------------GT------- 106 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~-----~~p~l~-----~~~~------------g~------- 106 (583)
...++|+|||||+||+++|..|++.|++|+|||+...+. |...+. .... +.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 345799999999999999999999999999999853221 100000 0000 00
Q ss_pred ---CCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEE---EEecCCCCCCCCCceEEeecCEEEEccCCCC
Q 007975 107 ---VEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKV---YCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (583)
Q Consensus 107 ---~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~ 175 (583)
++...+...+.+.+.+.+ ++++.++|+.|..+...+ .+.++ .++.++.||+|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~G--V~~~~~~V~~I~~~~~~~~vv~~~dG----------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESG--VSYLSSKVDRITEASDGLRLVACEDG----------RVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcC--CEEEeeEEEEEEEcCCcEEEEEEcCC----------cEEECCEEEECCCcCh
Confidence 001111122333344556 556788999998654442 22222 1799999999999875
No 119
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.38 E-value=5e-06 Score=88.47 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+..+.+.+.+.+++.|++++.+++|.+++. +.+.+.. .+| ++.+|.||.|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~-~~g---~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT-TQG---EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE-CCC---EEEeCEEEECCCcchH
Confidence 357788888899999999999999999863 4454443 334 2999999999996543
No 120
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=2e-06 Score=92.89 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. ...++...+.+.+++.++++. ...+|+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------~~~~~~~~~~~~l~~~GI~i~-~~~~V~~i 224 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------EEPSVAALAKQYMEEDGITFL-LNAHTTEV 224 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------CCHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 578999999999999999999999999999998754211 012344456677788886653 46789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+...+.+.... .++.||.||+|+|..|+..
T Consensus 225 ~~~~~~v~v~~~g---------~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 225 KNDGDQVLVVTED---------ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EecCCEEEEEECC---------eEEEcCEEEEeeCCCCCcc
Confidence 8766655544321 2799999999999998854
No 121
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.36 E-value=3.4e-06 Score=85.89 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=72.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc---c--------cCcc-----cHHHHHHHHHHH
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH---I--------LNMF-----DKRITAFAEEKF 288 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~---i--------l~~~-----~~~~~~~~~~~L 288 (583)
+|+|||||+.|+++|..|.+. +.+|+|+++.+. + .|.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA--------------NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 699999999999999998774 578999997651 1 1322 257788888999
Q ss_pred HhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 289 SRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
++.|+++++ ++|++++.+ ...+.. .+|++ +.+|.+|+|+|..+.
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~-~~~~~--~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKT-GDGKE--YTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEe-CCCCE--EEeCEEEECCCCCcc
Confidence 999999999 889998754 234443 33554 999999999996543
No 122
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.35 E-value=1.6e-06 Score=92.31 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=72.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh---------hhccccC-------C------------
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP---------SVTCGTV-------E------------ 108 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~---------~~~~g~~-------~------------ 108 (583)
++++||||||||||.+||+.|++.|++|+|+|+.+..+..+... ++..... .
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 56899999999999999999999999999999988766644321 1111000 0
Q ss_pred ------------CcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCC
Q 007975 109 ------------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARA 175 (583)
Q Consensus 109 ------------~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~ 175 (583)
...+...+.+...+.|.++. ...++..+..++..+...... + ..++.++++|.|.|...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~-~~~~~~~~~~~~~~~~~~~~~-----~--~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELY-PGTRVTGVIREDDGVVVGVRA-----G--DDEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEE-eceEEEEEEEeCCcEEEEEEc-----C--CEEEEcCEEEECCCcch
Confidence 00111124455556676653 467777777666443322211 0 13899999999999864
No 123
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.35 E-value=6.1e-06 Score=85.84 Aligned_cols=55 Identities=22% Similarity=0.442 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEe--CCe--EEEEEcCCCeeEEeecceEEEccCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DKE--IFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~--v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.+.+.+.+.+++.|++++.+++++.++ .++ +.+....+|+..++.+|+||-|-|.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~ 170 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGA 170 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCc
Confidence 566777888888899999999999875 344 3445544576667999999999994
No 124
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=2.7e-06 Score=92.29 Aligned_cols=102 Identities=13% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+|+++.+.+.. . ...++...+.+.+++.++++. .+.+++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----~------~d~e~~~~l~~~L~~~GI~i~-~~~~V~~i 237 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----G------EDEDIAHILREKLENDGVKIF-TGAALKGL 237 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----c------ccHHHHHHHHHHHHHCCCEEE-ECCEEEEE
Confidence 47899999999999999999989999999998875321 0 122455667777888887763 46789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+.+.+.+.... +..++.||.||+|+|..|+..
T Consensus 238 ~~~~~~v~~~~~g-------~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 238 NSYKKQALFEYEG-------SIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEcCCEEEEEECC-------ceEEEEeCEEEEecCCccCCC
Confidence 8776666654321 123799999999999998764
No 125
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.33 E-value=2.7e-06 Score=91.58 Aligned_cols=99 Identities=18% Similarity=0.323 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+.... . ..++...+.+.+++.|+++. ...++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~---------~-~~~~~~~~~~~l~~~gV~v~-~~~~v~~i 205 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL---------F-DEEMNQIVEEELKKHEINLR-LNEEVDSI 205 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc---------c-CHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4799999999999999999999999999999887542110 1 12445567777888887663 47789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
+.+...+.+.++. ++.+|.||+|+|..|+.
T Consensus 206 ~~~~~~v~~~~g~----------~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 206 EGEERVKVFTSGG----------VYQADMVILATGIKPNS 235 (427)
T ss_pred ecCCCEEEEcCCC----------EEEeCEEEECCCccCCH
Confidence 8776543443332 79999999999998875
No 126
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=2.8e-06 Score=92.42 Aligned_cols=105 Identities=25% Similarity=0.428 Sum_probs=77.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+||||++.+.+. +. ...++...+.+.+++.++++. .+.+|+.|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~------~~~~~~~~l~~~l~~~gV~i~-~~~~V~~i 239 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-----PG------EDKEISKLAERALKKRGIKIK-TGAKAKKV 239 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-----Cc------CCHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4789999999999999999999999999999987532 11 112455667777888886663 46789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+++.+.+.... +++..++.+|.||+|+|.+|+...
T Consensus 240 ~~~~~~v~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 240 EQTDDGVTVTLED-----GGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEe-----CCeeEEEEeCEEEEeeCCccCCCC
Confidence 8766555443211 111247999999999999987643
No 127
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.32 E-value=3.3e-06 Score=90.28 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=79.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.-+++++|||||+.|+..|..+++.|.+|||||+.+.+.- ....++...+.+.+++.++.+ +....++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-----------~~D~ei~~~~~~~l~~~gv~i-~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-----------GEDPEISKELTKQLEKGGVKI-LLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-----------cCCHHHHHHHHHHHHhCCeEE-EccceEE
Confidence 4578999999999999999999999999999999986431 123467788888888866554 3577788
Q ss_pred EEecCCC--EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 136 KIDAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 136 ~id~~~~--~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
.+...++ .+.++++.+ ..+.+|++++|+|-+|+..+
T Consensus 239 ~~~~~~~~v~v~~~~g~~--------~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEG--------GTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEecCCeEEEEEecCCC--------CEEEeeEEEEccCCccCCCC
Confidence 8876655 344444331 16889999999999998764
No 128
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=3.5e-06 Score=91.90 Aligned_cols=103 Identities=20% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||++|+.+|..|++.|.+||||++.+.+. +. ...++...+.+.+++.|+++. ...+|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~~------~~~~~~~~l~~~l~~~gI~i~-~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----PT------EDAELSKEVARLLKKLGVRVV-TGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----Cc------CCHHHHHHHHHHHHhcCCEEE-eCcEEEEE
Confidence 4799999999999999999999999999999887531 11 122455667777888887763 47788888
Q ss_pred ec--CCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DA--ENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~--~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+. +++.+...... ++..++.||.||+|+|..|+..
T Consensus 248 ~~~~~~~~~~~~~~~------g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 248 TLKKDGGVLIVAEHN------GEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred EEecCCCEEEEEEeC------CceEEEEeCEEEEeeCCccCCC
Confidence 75 34432222111 1124799999999999998764
No 129
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.31 E-value=8.4e-07 Score=96.80 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~ 98 (583)
+.++|||||||++||+||..|++.|++|+|+||+...++...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 468999999999999999999999999999999988776543
No 130
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.31 E-value=2.8e-06 Score=90.21 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=30.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
++|+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.30 E-value=2.9e-06 Score=92.97 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
..++|+|||||+||++||..+++.|.+|+|||++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 45899999999999999999999999999999884
No 132
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.30 E-value=1.7e-05 Score=86.41 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--C-eEEEE--EcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--K-EIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~-~v~~~--~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~ 348 (583)
..+...+.+.++++|++++++++|++++. + .+.+. +..+|+..++.+|.||.|+|.... .+...+|+
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~----~La~~~Gi 249 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL----PLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH----HHHHHcCC
Confidence 56788888888899999999999999964 2 34332 223353334899999999996443 34445554
No 133
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.29 E-value=3.2e-06 Score=91.90 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=76.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. |. ...++...+.+.+++.++++. ...+|..|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l--~~---------~~~~~~~~~~~~l~~~gi~i~-~~~~v~~i 237 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL--PG---------EDAEVSKVVAKALKKKGVKIL-TNTKVTAV 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC--CC---------CCHHHHHHHHHHHHHcCCEEE-eCCEEEEE
Confidence 4799999999999999999999999999999987532 10 112344556677888886663 46789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+++.+.+.... + +..++.+|.||+|+|..|+..
T Consensus 238 ~~~~~~v~v~~~~-----g-~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 238 EKNDDQVVYENKG-----G-ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEeCCEEEEEEeC-----C-cEEEEEeCEEEEecCCcccCC
Confidence 8776666554321 1 123799999999999998765
No 134
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.28 E-value=2.4e-05 Score=82.00 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=29.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999876 99999998754
No 135
>PRK07236 hypothetical protein; Provisional
Probab=98.28 E-value=4.6e-06 Score=88.52 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=34.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+++.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 136
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.27 E-value=6.3e-05 Score=80.36 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe---CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
..+...+.+.++++|++++.+++|++++ ++.+....+.+|+ +.++.||+|+|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~---i~a~~vVvaagg~ 239 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF---IGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce---EECCEEEECCChh
Confidence 3555666788899999999999999995 2334333334463 8999999998843
No 137
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.27 E-value=4.3e-06 Score=88.70 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
+.+|+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 579999999999999999999999999999988653
No 138
>PRK06184 hypothetical protein; Provisional
Probab=98.27 E-value=3.5e-06 Score=92.66 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
++.+|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998754
No 139
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.27 E-value=3.3e-05 Score=81.58 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=52.3
Q ss_pred hHhhhcCCCC-CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecc
Q 007975 249 DLFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYG 325 (583)
Q Consensus 249 ~~~~~~p~~~-~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D 325 (583)
.+.+.+|.+. +....-+.......+. +..+.+.+.+.+++.|++++.+++|++++. +.+.+.. .+|+ +.+|
T Consensus 117 e~~~~~P~l~~~~~~~~~~~~~~g~i~--p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~-~~~~---i~a~ 190 (380)
T TIGR01377 117 QLKQRFPNIRVPRNEVGLLDPNGGVLY--AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKT-TKGS---YQAN 190 (380)
T ss_pred HHHHhCCCCcCCCCceEEEcCCCcEEc--HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEe-CCCE---EEeC
Confidence 3445566553 2222344444433322 346677777888889999999999999964 4455443 3343 8999
Q ss_pred eEEEccCCCCc
Q 007975 326 MVVWSTGIAPH 336 (583)
Q Consensus 326 ~vI~a~G~~~~ 336 (583)
.||+|+|....
T Consensus 191 ~vV~aaG~~~~ 201 (380)
T TIGR01377 191 KLVVTAGAWTS 201 (380)
T ss_pred EEEEecCcchH
Confidence 99999995433
No 140
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.27 E-value=4.9e-06 Score=87.96 Aligned_cols=101 Identities=16% Similarity=0.294 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+||++.+.+.-. ..+..+...+.+.+++.++++. ...++..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~gV~i~-~~~~v~~i 209 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------LMPPEVSSRLQHRLTEMGVHLL-LKSQLQGL 209 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------hCCHHHHHHHHHHHHhCCCEEE-ECCeEEEE
Confidence 468999999999999999999999999999988753210 1122344566777888886653 46789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
+.+...+.+.... + .++.+|.||+|+|..|+.
T Consensus 210 ~~~~~~~~v~~~~-----g---~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 210 EKTDSGIRATLDS-----G---RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EccCCEEEEEEcC-----C---cEEECCEEEECcCCCcch
Confidence 8765544333221 1 179999999999998864
No 141
>PRK06834 hypothetical protein; Provisional
Probab=98.26 E-value=4e-06 Score=91.53 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=71.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CC----ch-------------hhhcc--------c----c
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF-TP----LL-------------PSVTC--------G----T 106 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~-~p----~l-------------~~~~~--------g----~ 106 (583)
+..+|+|||||++|+++|..|++.|++|+|||+.+.... .+ +. ..+.. + .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 458999999999999999999999999999998754211 00 00 01100 0 0
Q ss_pred CCCcc---------------cchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEcc
Q 007975 107 VEARS---------------IVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAM 171 (583)
Q Consensus 107 ~~~~~---------------i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAt 171 (583)
.+... +..-+.+.+++.++++. ...+|+++..++..+.+.... + .++.+|+||.|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~-~~~~v~~v~~~~~~v~v~~~~-----g---~~i~a~~vVgAD 152 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIY-RGREVTGFAQDDTGVDVELSD-----G---RTLRAQYLVGCD 152 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEE-cCCEEEEEEEcCCeEEEEECC-----C---CEEEeCEEEEec
Confidence 00000 11113334455666664 477899998877766654322 1 179999999999
Q ss_pred CCCCCC
Q 007975 172 GARANT 177 (583)
Q Consensus 172 G~~~~~ 177 (583)
|..+..
T Consensus 153 G~~S~v 158 (488)
T PRK06834 153 GGRSLV 158 (488)
T ss_pred CCCCCc
Confidence 997643
No 142
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.26 E-value=7e-06 Score=90.94 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=53.8
Q ss_pred hHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCe---EEEEEcCCCeeEEee
Q 007975 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKE---IFTKVRGNGETSSMP 323 (583)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~ 323 (583)
.+.+.+|.+.++..-.+......+ -+..+...+.+..+++|++++++++|+++. ++. +++.+..+|+..++.
T Consensus 123 e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~ 199 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIH 199 (546)
T ss_pred HHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEE
Confidence 344556776544333333333222 234666666777889999999999999985 333 444443345444699
Q ss_pred cceEEEccCCCC
Q 007975 324 YGMVVWSTGIAP 335 (583)
Q Consensus 324 ~D~vI~a~G~~~ 335 (583)
+|.||.|+|...
T Consensus 200 A~~VVnAaG~wa 211 (546)
T PRK11101 200 APVVVNAAGIWG 211 (546)
T ss_pred CCEEEECCChhH
Confidence 999999999543
No 143
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.26 E-value=3.1e-06 Score=91.63 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCCeEEEEeC---CeEEEE--EcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCcC--
Q 007975 278 KRITAFAEEKFSR-DGIDVKLGSMVVKVTD---KEIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT-- 349 (583)
Q Consensus 278 ~~~~~~~~~~L~~-~GV~v~~~~~V~~v~~---~~v~~~--~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~-- 349 (583)
..+.+.+.+.+.+ .|++++++++|+.++. +.+++. ...+|+..++.+|.||+|+|.... .++..+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~----~La~~~Gi~~~ 259 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI----PLLQKSGIPES 259 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH----HHHHHcCCCcc
Confidence 4566677777754 5999999999999853 333332 233453224899999999996544 345555542
Q ss_pred -------CCc-ceEeCCCCccCCCC-CEEEcCccc
Q 007975 350 -------NRR-ALATDEWLRVEGSD-SIYALGDCA 375 (583)
Q Consensus 350 -------~~g-~i~Vd~~l~~~~~~-~VyAiGD~a 375 (583)
-+| ++.++..-.+..++ .||-.+|.-
T Consensus 260 ~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~ 294 (497)
T PRK13339 260 KHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVG 294 (497)
T ss_pred CCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCC
Confidence 234 23333211111233 599998764
No 144
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.26 E-value=3.1e-05 Score=84.19 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeCCe-EEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTDKE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
..+...+.+.+++.||+|+.++.|++++.+. +.+. +.+|+ +.+|.||+|+|....
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVR-TPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEE-eCCcE---EECCEEEEccccccc
Confidence 4677778888999999999999999997543 3333 34454 899999999995433
No 145
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.26 E-value=5.1e-06 Score=87.68 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=67.0
Q ss_pred eEEEECCcHHHHHHHHhc--CCCCCeEEEEcCCCCCCCCC------c------hhhhccccCC-----------------
Q 007975 60 KVVVLGTGWAGTSFLKNL--NNPSYDVQVISPRNYFAFTP------L------LPSVTCGTVE----------------- 108 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L--~~~g~~Vtlie~~~~~~~~p------~------l~~~~~g~~~----------------- 108 (583)
||+|||||+||+++|..| .+.|.+|+|||+++...+.. . +..+.....+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 699999999999999999 78999999999876542211 0 0011100000
Q ss_pred -----CcccchhHHHHHHhCCCcEEEEEeEEEEEecCCC--EEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 109 -----ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 109 -----~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
...+...+.+.+...+ +.++.++|++|+.... .|.+.++. ++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~--~~~~~~~V~~i~~~~~~~~v~~~~g~----------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG--VIRLNARVTSIEETGDGVLVVLADGR----------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC--eEEEccEEEEEEecCceEEEEECCCC----------EEEeeEEEECCCcccc
Confidence 0001111222333233 5578999999998877 34444432 8999999999996543
No 146
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.25 E-value=5.5e-06 Score=88.07 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3457999999999999999999999999999999753
No 147
>PRK06126 hypothetical protein; Provisional
Probab=98.25 E-value=1.4e-05 Score=88.84 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=33.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3457999999999999999999999999999998864
No 148
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.25 E-value=3.1e-06 Score=91.28 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=34.7
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+..++++|+||||||||++||..|++.|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45567899999999999999999999999999999874
No 149
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.24 E-value=5.2e-06 Score=88.94 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
.++|+|||||++|+++|..|++.|++|+|||+++..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 579999999999999999999999999999988653
No 150
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.23 E-value=4.7e-06 Score=82.77 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-----chhh---------hc--cccC-----------CCc
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP-----LLPS---------VT--CGTV-----------EAR 110 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p-----~l~~---------~~--~g~~-----------~~~ 110 (583)
..+|+|||||++|++||+.|++.|++|+||||++.++... +++. +. .+.. +..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5799999999999999999999999999999997754221 0100 00 0000 011
Q ss_pred ccchhHHHHHHhCCCcEEEEEeEEEEEecCCC--E---EEEecCCCCCCCC--CceEEeecCEEEEccCCC
Q 007975 111 SIVEPVRNIVRKKNVDICFWEAECFKIDAENK--K---VYCRSSQNTNLNG--KEEFCMDYDYLVIAMGAR 174 (583)
Q Consensus 111 ~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~--~---v~~~~~~~~~~~~--~~~~~i~yD~LViAtG~~ 174 (583)
++...+.+.+.+.++++ +...+|+++..++. . |.+.... ...++ .+...+.++.+|.|||..
T Consensus 101 el~~~L~~~a~e~GV~I-~~~t~V~dli~~~~~~~V~GVv~~~~~-v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKI-FNGTSVEDLITRDDTVGVAGVVINWSA-IELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEE-ECCcEEEEEEEeCCCCceEEEEeCCcc-ccccCCCCCCEEEEcCEEEEeecCC
Confidence 22333444455667554 34667888776444 2 2222110 00001 113489999999999964
No 151
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.22 E-value=7.3e-06 Score=89.37 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=75.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+||||++.+.+.. . ...++...+.+.+++.++++. ...+|+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~---------~d~~~~~~~~~~l~~~gi~i~-~~~~v~~i 250 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA--A---------ADEQVAKEAAKAFTKQGLDIH-LGVKIGEI 250 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC--c---------CCHHHHHHHHHHHHHcCcEEE-eCcEEEEE
Confidence 47999999999999999999999999999999875321 0 122445566677777886653 46789999
Q ss_pred ecCCCEEEEe--cCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCR--SSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~--~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+...+.+. ++. +++..+++|.|++|+|..|+..
T Consensus 251 ~~~~~~v~v~~~~~~------g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 251 KTGGKGVSVAYTDAD------GEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred EEcCCEEEEEEEeCC------CceeEEEcCEEEEccCCccCCC
Confidence 8766554433 221 1224799999999999998865
No 152
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.21 E-value=8.4e-06 Score=86.48 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.+..++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34457999999999999999999999999999999854
No 153
>PRK07233 hypothetical protein; Provisional
Probab=98.21 E-value=8e-06 Score=87.87 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=34.8
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
+|||||||++||+||+.|.+.|++|+|+|+++..++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6999999999999999999999999999999988775
No 154
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.21 E-value=4.9e-06 Score=88.60 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+||||++.+.+... .....+...+.+.+++.++++. ...+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 212 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------NAPPPVQRYLLQRHQQAGVRIL-LNNAIEHV 212 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------hcCHHHHHHHHHHHHHCCCEEE-eCCeeEEE
Confidence 468999999999999999999999999999988753211 1122344556677778886653 46788888
Q ss_pred ecCCC-EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
+.+.. .+.+.++. .+.+|.||+|+|..|+.
T Consensus 213 ~~~~~~~v~l~~g~----------~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 213 VDGEKVELTLQSGE----------TLQADVVIYGIGISAND 243 (396)
T ss_pred EcCCEEEEEECCCC----------EEECCEEEECCCCChhh
Confidence 75322 23343322 79999999999998764
No 155
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.21 E-value=2.4e-06 Score=95.36 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
....+|||||+|.+|+++|..+.+.|++|+|||+++..+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 34679999999999999999999999999999998765554
No 156
>PRK06370 mercuric reductase; Validated
Probab=98.20 E-value=6.9e-06 Score=89.33 Aligned_cols=102 Identities=21% Similarity=0.364 Sum_probs=75.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. ...++...+.+.+++.++++. ...+|..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------~~~~~~~~l~~~l~~~GV~i~-~~~~V~~i 238 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------EDEDVAAAVREILEREGIDVR-LNAECIRV 238 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------cCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 579999999999999999999999999999998754211 122445667777888886653 46789999
Q ss_pred ecCCCE--EEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+++. +.+.... +..++.+|.||+|+|.+|+..
T Consensus 239 ~~~~~~~~v~~~~~~-------~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 239 ERDGDGIAVGLDCNG-------GAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEcCCEEEEEEEeCC-------CceEEEeCEEEECcCCCcCCC
Confidence 876543 3332211 123799999999999998864
No 157
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.20 E-value=4.7e-05 Score=83.77 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
..+.+.+.+.++++|++|++++.|++|. ++.++.....+|++ +.+|.||++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~--~~ad~VI~a~~ 273 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGER--LDADAVVSNAD 273 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCE--EECCEEEECCc
Confidence 4678888889999999999999999985 34433333345664 89999999887
No 158
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.20 E-value=1.7e-06 Score=81.09 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNV 125 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i 125 (583)
..+|+||||||+||+||++|++.|++|+|+|++.++++....-...... --+..+-+.+++..++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~---iVv~~~a~~iL~e~gI 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNK---IVVREEADEILDEFGI 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccce---eeecchHHHHHHHhCC
Confidence 4699999999999999999999999999999999987754332222111 1345567788888773
No 159
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.19 E-value=7.5e-06 Score=89.07 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+||||++.+.+.- . ...++...+.+.+++.++++. ...+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~------~d~~~~~~l~~~l~~~gV~i~-~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R------EEPEISAAVEEALAEEGIEVV-TSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c------cCHHHHHHHHHHHHHcCCEEE-cCcEEEEE
Confidence 47999999999999999999999999999999865321 0 112345667777888886653 46678888
Q ss_pred ecCCCE--EEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+++. +.+.... +..++.+|.+|+|+|..|+...
T Consensus 234 ~~~~~~~~v~~~~~~-------~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 234 SVRGGGKIITVEKPG-------GQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEcCCEEEEEEEeCC-------CceEEEeCEEEEeECCCcCCCC
Confidence 876543 3332211 1237999999999999988653
No 160
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.19 E-value=1.2e-05 Score=86.84 Aligned_cols=99 Identities=33% Similarity=0.494 Sum_probs=71.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc------cCcc-----c--HHHHHHHHHHHHhC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI------LNMF-----D--KRITAFAEEKFSRD 291 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i------l~~~-----~--~~~~~~~~~~L~~~ 291 (583)
+|+|||||+.|+++|..|.++. ++.+|+|+++.+.+ ++.+ + ..+.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999987752 24699999998863 2211 1 12233345668889
Q ss_pred CCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
||++++++.|++|+. +.+.+.+..+|+..++.+|.+|+|+|.++
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 999999999999974 45666543335542344999999999654
No 161
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=6.3e-06 Score=87.88 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~ 92 (583)
+++|+|||||++|+++|..|++.| ++|+|||+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 478999999999999999999875 99999999754
No 162
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.17 E-value=9.5e-05 Score=80.66 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCC-CEEEeCCeEEEEeC--Ce-EEE--EEcCCCeeEEeecceEEEccCCCCch
Q 007975 278 KRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KE-IFT--KVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 278 ~~~~~~~~~~L~~~G-V~v~~~~~V~~v~~--~~-v~~--~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
..+.+.+.+.+++.| |+++++++|++++. ++ +.+ .+..+|+..++.++.||.|+|....+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 467777788888886 99999999999863 33 333 22234542248999999999965443
No 163
>PRK14694 putative mercuric reductase; Provisional
Probab=98.15 E-value=1.1e-05 Score=87.74 Aligned_cols=99 Identities=13% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||+|+.|+.+|..|++.|.+|+|+++...+ +. ...++...+.+.+++.++++. ...++..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~------~~~~~~~~l~~~l~~~GI~v~-~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ------EDPAVGEAIEAAFRREGIEVL-KQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC------CCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 479999999999999999999999999999864321 11 122456677888888886653 35688899
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.++..+.+.... + ++.+|.||+|+|..|+..
T Consensus 245 ~~~~~~~~v~~~~-------~--~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 245 DYNGREFILETNA-------G--TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEcCCEEEEEECC-------C--EEEeCEEEEccCCCCCcC
Confidence 8776655544321 1 699999999999998764
No 164
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.15 E-value=1.3e-05 Score=73.62 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=62.9
Q ss_pred EEECCcHHHHHHHHhcCCC-----CCeEEEEcCCCCCCCCCchh----h----hcccc-------------------C--
Q 007975 62 VVLGTGWAGTSFLKNLNNP-----SYDVQVISPRNYFAFTPLLP----S----VTCGT-------------------V-- 107 (583)
Q Consensus 62 VIIGgG~aGl~aA~~L~~~-----g~~Vtlie~~~~~~~~p~l~----~----~~~g~-------------------~-- 107 (583)
+|||||++|++++.+|.+. ..+|+|||+++.-.+.+..+ . ...+. .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999998743 67899999965421111100 0 00000 0
Q ss_pred -----CCcc----------cchhHHHHHHh--CCCcEEEEEeEEEEEecCCCEEE--EecCCCCCCCCCceEEeecCEEE
Q 007975 108 -----EARS----------IVEPVRNIVRK--KNVDICFWEAECFKIDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLV 168 (583)
Q Consensus 108 -----~~~~----------i~~~~~~~~~~--~~i~v~~~~~~v~~id~~~~~v~--~~~~~~~~~~~~~~~~i~yD~LV 168 (583)
.... +...++.++.. .++.++++..+|+.|+....... +.++. .+.+|+||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~----------~~~~d~Vv 150 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQ----------SIRADAVV 150 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCC----------EEEeCEEE
Confidence 0000 11112222222 35678889999999999876543 33332 88999999
Q ss_pred EccCC
Q 007975 169 IAMGA 173 (583)
Q Consensus 169 iAtG~ 173 (583)
+|||.
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99996
No 165
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.15 E-value=8.9e-06 Score=87.76 Aligned_cols=97 Identities=20% Similarity=0.346 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. ...++...+.+.+++.|+++. .+.+|..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~---------~d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KL---------MDADMNQPILDELDKREIPYR-LNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hh---------cCHHHHHHHHHHHHhcCCEEE-ECCeEEEE
Confidence 4689999999999999999999999999999886532 11 112455667788888887663 47788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+. ..+.+.++. .+.+|.|++|+|.+|+..
T Consensus 216 ~~--~~v~~~~g~----------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 216 NG--NEVTFKSGK----------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eC--CEEEECCCC----------EEEeCEEEECcCCCcChH
Confidence 74 356665432 789999999999998753
No 166
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.14 E-value=1.2e-05 Score=85.92 Aligned_cols=34 Identities=15% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999876
No 167
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.13 E-value=8.6e-06 Score=86.65 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
++.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3579999999999999999999999999999998653
No 168
>PRK08244 hypothetical protein; Provisional
Probab=98.13 E-value=8.3e-06 Score=89.47 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.++|+||||||+|+++|..|++.|++|+|||+++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999998754
No 169
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.13 E-value=1.3e-05 Score=86.62 Aligned_cols=101 Identities=27% Similarity=0.418 Sum_probs=76.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||||+.|+.+|..|.+.|.+|+||++.+.+. | . ...++...+.+.+++.++++. ...++..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~---~------~~~~~~~~l~~~l~~~gV~v~-~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL--P---R------EDRDIADNIATILRDQGVDII-LNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC--C---C------cCHHHHHHHHHHHHhCCCEEE-eCCEEEE
Confidence 35699999999999999999999999999999876432 1 1 012445567778888886653 4778999
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
++.++..+.+.... .++.+|.+++|+|..|+..
T Consensus 225 i~~~~~~v~v~~~~---------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 225 ISHHENQVQVHSEH---------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEcCCEEEEEEcC---------CeEEeCEEEEeecCCcCCC
Confidence 98766656554321 1688999999999998764
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.13 E-value=1.3e-05 Score=87.16 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. + . ...++...+.+.+++.++++. ...+|+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~-----~-~d~~~~~~l~~~l~~~gI~v~-~~~~v~~i 242 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-----S-----F-LDDEISDALSYHLRDSGVTIR-HNEEVEKV 242 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----C-----c-CCHHHHHHHHHHHHHcCCEEE-ECCEEEEE
Confidence 5799999999999999999999999999999886532 1 0 122455667777888886653 46788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.++..+.+.... + .++.+|.+|+|+|.+|+..
T Consensus 243 ~~~~~~~~v~~~~-----g---~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 243 EGGDDGVIVHLKS-----G---KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEeCCeEEEEECC-----C---CEEEeCEEEEeecCCcccc
Confidence 7655544443211 1 1799999999999998764
No 171
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.12 E-value=1.4e-05 Score=86.59 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=73.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++...+.+.+++.++++. ...+|..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-----~~------~d~~~~~~l~~~l~~~gV~i~-~~~~v~~i 233 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-----RG------FDDDMRALLARNMEGRGIRIH-PQTSLTSI 233 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-----cc------cCHHHHHHHHHHHHHCCCEEE-eCCEEEEE
Confidence 5789999999999999999999999999999876532 11 112445566777888886653 46788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.....+.+.... + .++.+|.||+|+|..|+..
T Consensus 234 ~~~~~~~~v~~~~-----g---~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 234 TKTDDGLKVTLSH-----G---EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEcCCeEEEEEcC-----C---cEeecCEEEEeeCCCcCCC
Confidence 7644433332211 1 1799999999999998764
No 172
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=1.6e-05 Score=86.63 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=75.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+||++.+... +. . ..++...+.+.+++.++++. .+.+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~~-----~-d~~~~~~l~~~l~~~gV~i~-~~~~v~~i 239 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----PN-----E-DAEVSKEIAKQYKKLGVKIL-TGTKVESI 239 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----Cc-----c-CHHHHHHHHHHHHHCCCEEE-ECCEEEEE
Confidence 5799999999999999999999999999999876422 11 0 12345567778888887763 47789999
Q ss_pred ecCCCEEE--EecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~--~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+.+.+. +...+ + +..++++|.||+|+|..|+..
T Consensus 240 ~~~~~~~~v~~~~~~-----g-~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 240 DDNGSKVTVTVSKKD-----G-KAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEeCCeEEEEEEecC-----C-CeEEEEeCEEEECcCcccCCC
Confidence 87655443 32111 1 123799999999999998764
No 173
>PRK09126 hypothetical protein; Provisional
Probab=98.11 E-value=1.5e-05 Score=84.66 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 458999999999999999999999999999999864
No 174
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.10 E-value=8.9e-05 Score=76.94 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=62.5
Q ss_pred CCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHh
Q 007975 269 ADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQV 346 (583)
Q Consensus 269 ~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~ 346 (583)
.+++...-.+.+.+.+.+.|+++|++++++++|.+++ ++.+....+.+|++ +++|.||+|+|.....+...+.+++
T Consensus 164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~--i~~~~vvlA~Grsg~dw~~~l~~K~ 241 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEE--IEADYVVLAPGRSGRDWFEMLHKKL 241 (486)
T ss_pred ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcE--EecCEEEEccCcchHHHHHHHHHhc
Confidence 3445445567888999999999999999999998885 44455555556875 9999999999988888888888887
Q ss_pred Cc
Q 007975 347 GQ 348 (583)
Q Consensus 347 ~~ 348 (583)
|+
T Consensus 242 Gv 243 (486)
T COG2509 242 GV 243 (486)
T ss_pred Cc
Confidence 76
No 175
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.10 E-value=1.1e-05 Score=85.29 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
++++|+|||||+.|+++|+.|++.|++|+|||++.
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35799999999999999999999999999999874
No 176
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.10 E-value=0.0001 Score=73.42 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=88.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-----------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------------------------- 275 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~----------------------------- 275 (583)
.|+|||||++|+-+|..+++. +.+|.++++.+.+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~--------------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKA--------------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 899999999999999998764 5788888876543110
Q ss_pred ---------ccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CC-eEE---EEEc---CCC---eeEEeecceEEEccCCC
Q 007975 276 ---------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EIF---TKVR---GNG---ETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 276 ---------~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~v~---~~~~---~~G---~~~~i~~D~vI~a~G~~ 334 (583)
-...+...+.+..++.|++++.+++|.++. ++ .+. +... .+| +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012344556667788899999999998874 33 332 2110 011 22359999999999953
Q ss_pred CchhHHHHHHHhC-----c-C------CCc-ceEeCCCCccCCCCCEEEcCccccc
Q 007975 335 PHAIIKDFMKQVG-----Q-T------NRR-ALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 335 ~~p~~~~l~~~~~-----~-~------~~g-~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
. .....+.+..+ + . .+| ..+|+.+-++ +|++|++|=+++.
T Consensus 173 a-~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~ 225 (257)
T PRK04176 173 A-EVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANA 225 (257)
T ss_pred c-HHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhh
Confidence 3 34434444322 1 0 122 3445555555 8999999988763
No 177
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.10 E-value=1.7e-05 Score=84.33 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45899999999999999999999999999999875
No 178
>PRK06116 glutathione reductase; Validated
Probab=98.09 E-value=1.4e-05 Score=86.59 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=74.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+.+.+++.++++. ...+|..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~~------~~~~~~~~l~~~L~~~GV~i~-~~~~V~~i 234 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-----RG------FDPDIRETLVEEMEKKGIRLH-TNAVPKAV 234 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----cc------cCHHHHHHHHHHHHHCCcEEE-CCCEEEEE
Confidence 5799999999999999999999999999999886532 10 112455667777888886653 47789999
Q ss_pred ecCCCE-EEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKK-VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~-v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+++. +.+.... + .++.+|.+|+|+|..|+..
T Consensus 235 ~~~~~g~~~v~~~~-----g---~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 235 EKNADGSLTLTLED-----G---ETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred EEcCCceEEEEEcC-----C---cEEEeCEEEEeeCCCcCCC
Confidence 865332 3333211 1 1789999999999998765
No 179
>PRK07846 mycothione reductase; Reviewed
Probab=98.09 E-value=1.8e-05 Score=85.67 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+||||++.+.+. +. . ..++...+.+++ +.++++. .+.+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~-d~~~~~~l~~l~-~~~v~i~-~~~~v~~i 232 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----RH-----L-DDDISERFTELA-SKRWDVR-LGRNVVGV 232 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----c-CHHHHHHHHHHH-hcCeEEE-eCCEEEEE
Confidence 5799999999999999999999999999999987542 10 1 122334444444 3455553 47789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+++.+.+...++ .++++|.|++|+|.+|+...
T Consensus 233 ~~~~~~v~v~~~~g--------~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 233 SQDGSGVTLRLDDG--------STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEcCCEEEEEECCC--------cEeecCEEEEEECCccCccc
Confidence 87665444432211 17999999999999988654
No 180
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.09 E-value=5.2e-05 Score=77.73 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=78.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-----------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM----------------------------- 275 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~----------------------------- 275 (583)
.|+|||||+.|+=+|..+++. +.+|+|++..+.+...
T Consensus 5 dviIIGgGpAGlMaA~~aa~~--------------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~ 70 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAAKA--------------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGH 70 (408)
T ss_pred eEEEECCCHHHHHHHHHHhhc--------------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcch
Confidence 899999999999999988875 5688888776553210
Q ss_pred --------c------------------------------cHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC--eEEEEEcC
Q 007975 276 --------F------------------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK--EIFTKVRG 315 (583)
Q Consensus 276 --------~------------------------------~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~ 315 (583)
| ...+.+.+..++++.||+++++++|.+|+.+ ...+.. .
T Consensus 71 fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t-~ 149 (408)
T COG2081 71 FLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT-S 149 (408)
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc-C
Confidence 0 0224556677889999999999999999865 455543 5
Q ss_pred CCeeEEeecceEEEccCCCCch------hHHHHHHHhCc
Q 007975 316 NGETSSMPYGMVVWSTGIAPHA------IIKDFMKQVGQ 348 (583)
Q Consensus 316 ~G~~~~i~~D~vI~a~G~~~~p------~~~~l~~~~~~ 348 (583)
+|++ +.||.+|+|+|-..-| .--.++++.|+
T Consensus 150 ~g~~--i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~ 186 (408)
T COG2081 150 SGET--VKCDSLILATGGKSWPKLGSTGFGYPIARQFGH 186 (408)
T ss_pred CCCE--EEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence 5764 9999999999955555 33345666664
No 181
>PRK07190 hypothetical protein; Provisional
Probab=98.09 E-value=1.6e-05 Score=86.72 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 457999999999999999999999999999998864
No 182
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=1.1e-05 Score=85.93 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++++|||+|+.|+.+|..|++.|++|+++|+.+........ ..+...+.+.++.+++++. ....+..|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~~-~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVELL-LGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEEE-eCCceEEE
Confidence 479999999999999999999999999999999876554322 3556778888999985553 57788999
Q ss_pred ecCCCEE-----EEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 138 DAENKKV-----YCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 138 d~~~~~v-----~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
+...+.+ ....+ ..+++|.+++++|.+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~----------~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDG----------EEIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCC----------cEEEeeEEEEeeccccc
Confidence 8876543 22222 28999999999999986
No 183
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.07 E-value=1.7e-05 Score=83.82 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=31.3
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
No 184
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.06 E-value=2e-05 Score=83.68 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC---CCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNP---SYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~---g~~Vtlie~~ 90 (583)
.+.+|+|||||++|+++|..|++. |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 467999999999999999999987 9999999994
No 185
>PLN02507 glutathione reductase
Probab=98.05 E-value=2.2e-05 Score=86.06 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|+..|.+|+||++.+... + . ...++...+.+.+++.++++. ...+|..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~-----~-~d~~~~~~l~~~l~~~GI~i~-~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----R-----G-FDDEMRAVVARNLEGRGINLH-PRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----c-----c-cCHHHHHHHHHHHHhCCCEEE-eCCEEEEE
Confidence 4799999999999999999999999999999876421 1 0 122455667777888887763 46788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+.+.+.+.... + .++++|.+++|+|..|+...
T Consensus 271 ~~~~~~~~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 271 TKTEGGIKVITDH-----G---EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEeCCeEEEEECC-----C---cEEEcCEEEEeecCCCCCCC
Confidence 7655545444322 1 17999999999999988653
No 186
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.05 E-value=2.2e-05 Score=85.38 Aligned_cols=102 Identities=16% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||+|+.|+.+|..|++.|.+||||++.+...-. ...++...+.+.+++.++++. ...++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-----------~d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-----------EDADAAEVLEEVFARRGMTVL-KRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------CCHHHHHHHHHHHHHCCcEEE-cCCEEEEE
Confidence 468999999999999999999999999999987653211 012345567778888886653 46678888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+...+.+.... + .++++|.+++|+|..|+...
T Consensus 245 ~~~~~~~~v~~~~-----g---~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 245 ERTGDGVVVTLTD-----G---RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEeCCEEEEEECC-----C---cEEEecEEEEeecCCcCCCC
Confidence 7555544443221 1 17999999999999988653
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=2.5e-05 Score=84.98 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=75.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||||+.|+.+|..|.+.|.+|||||+.+... + + . ..++...+.+.+++.++++. ...+|+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~----~-~-d~~~~~~l~~~l~~~gV~i~-~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----P----G-T-DTETAKTLQKALTKQGMKFK-LGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----C----C-C-CHHHHHHHHHHHHhcCCEEE-ECcEEEE
Confidence 35899999999999999999999999999999876532 1 1 1 12345667777888886663 4678888
Q ss_pred EecCCCEEE--EecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 137 IDAENKKVY--CRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 137 id~~~~~v~--~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
++.+.+.+. +.... ++....+.+|.|++|+|..|+..
T Consensus 241 i~~~~~~v~v~~~~~~-----~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 241 ATAGADGVSLTLEPAA-----GGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEcCCeEEEEEEEcC-----CCceeEEEeCEEEEccCCccccc
Confidence 876544433 33211 11123799999999999998764
No 188
>PRK07045 putative monooxygenase; Reviewed
Probab=98.03 E-value=1.8e-05 Score=83.97 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
.+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999988654
No 189
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.03 E-value=1.8e-05 Score=85.65 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|+..|.+||||++.+... .. ...++...+.+.+++.++++. ....++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-~~----------~d~~~~~~~~~~l~~~gI~i~-~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RS----------FDSMISETITEEYEKEGINVH-KLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-cc----------cCHHHHHHHHHHHHHcCCEEE-cCCEEEEE
Confidence 5799999999999999999999999999999886532 11 122455667777888886663 46788888
Q ss_pred ecCCC---EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~---~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+.. .+.+.++ ...+.+|.+++|+|..|+..
T Consensus 234 ~~~~~~~~~v~~~~g---------~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 234 EKTVEGKLVIHFEDG---------KSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEeCCceEEEEECCC---------cEEEEcCEEEEeeCCCcCcc
Confidence 75432 2333222 12799999999999998864
No 190
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.03 E-value=2.4e-05 Score=83.21 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+.+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 57899999999999999999999999999999864
No 191
>PRK13748 putative mercuric reductase; Provisional
Probab=98.03 E-value=2.3e-05 Score=87.46 Aligned_cols=99 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+||++.+. ++. ...++...+.+.+++.++++. .+..+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~------l~~------~d~~~~~~l~~~l~~~gI~i~-~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL------FFR------EDPAIGEAVTAAFRAEGIEVL-EHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc------ccc------cCHHHHHHHHHHHHHCCCEEE-cCCEEEEE
Confidence 47999999999999999999999999999997531 111 112455667788888886663 47788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.++..+.+.... + ++.+|.+++|+|..|+..
T Consensus 337 ~~~~~~~~v~~~~-------~--~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 337 AHVDGEFVLTTGH-------G--ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EecCCEEEEEecC-------C--eEEeCEEEEccCCCcCCC
Confidence 7665555544321 1 689999999999998864
No 192
>PLN02487 zeta-carotene desaturase
Probab=98.03 E-value=0.00013 Score=80.66 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=35.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
.+++|+|||||++|+++|..|.+.|++|+|+|+++..++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 456999999999999999999999999999999988764
No 193
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.02 E-value=0.00022 Score=70.84 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=86.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC----------c-------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN----------M------------------- 275 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~----------~------------------- 275 (583)
.|+|||||++|+-+|..+++. +.+|.++++.+.+.. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~--------------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKN--------------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 899999999999999998874 568888888754310 0
Q ss_pred ---------ccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CC--eE---EEEEc---CCC---eeEEeecceEEEccCC
Q 007975 276 ---------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK--EI---FTKVR---GNG---ETSSMPYGMVVWSTGI 333 (583)
Q Consensus 276 ---------~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~--~v---~~~~~---~~G---~~~~i~~D~vI~a~G~ 333 (583)
...++.+.+.+...+.||+++.++.|.++. ++ .+ ++... ..| +..++.++.||.|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 112345566667788899999999999874 33 22 22110 011 2346999999999995
Q ss_pred CCchhHHHHHHHhCcC--C------------Cc-ceEeCCCCccCCCCCEEEcCccccc
Q 007975 334 APHAIIKDFMKQVGQT--N------------RR-ALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 334 ~~~p~~~~l~~~~~~~--~------------~g-~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
.. ++...+.+..++. . .+ ...|+.+-.+ +|++|++|=.++-
T Consensus 169 ~a-~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~ 224 (254)
T TIGR00292 169 DA-EIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAA 224 (254)
T ss_pred Cc-hHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhh
Confidence 32 3443344444331 1 01 1223333333 7999999987653
No 194
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.02 E-value=0.00026 Score=79.56 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=55.4
Q ss_pred HhHhhhcCCCCCC-----ceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC----Ce---EEEEEcC
Q 007975 248 EDLFKLYPKVKDS-----VKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD----KE---IFTKVRG 315 (583)
Q Consensus 248 ~~~~~~~p~~~~~-----~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~----~~---v~~~~~~ 315 (583)
+.+.+.+|.+.+. ..-.++.. +... -+..+...+.+..+++|++++.+++|+++.. +. |++.+..
T Consensus 200 ~e~~~~~P~L~~~~~~~~l~ga~~~~-Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 200 KESLELFPTLAKKGKDGSLKGTVVYY-DGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHhCCCCCccccccceeEEEEec-CcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 4455667877643 33333332 3222 2457788888889999999999999999852 33 3443333
Q ss_pred CCeeEEeecceEEEccCCC
Q 007975 316 NGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 316 ~G~~~~i~~D~vI~a~G~~ 334 (583)
+|+..++.+|.||.|+|..
T Consensus 277 tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred CCcEEEEEeCEEEECCCHh
Confidence 4554458999999999943
No 195
>PRK11445 putative oxidoreductase; Provisional
Probab=98.02 E-value=2.9e-05 Score=81.30 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+++|+|||||+||+++|..|++. ++|+|||+++.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 47999999999999999999988 99999998864
No 196
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.01 E-value=9.6e-05 Score=78.48 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~~~~~ 96 (583)
++|+|||||++||+||++|.+.+ ++|+|+|+.++.++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 47999999999999999999777 999999999887653
No 197
>PRK14727 putative mercuric reductase; Provisional
Probab=98.01 E-value=2.7e-05 Score=85.07 Aligned_cols=99 Identities=12% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+||++... ++. . ..++...+.+.+++.++++. ...+|+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~------l~~-----~-d~~~~~~l~~~L~~~GV~i~-~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL------LFR-----E-DPLLGETLTACFEKEGIEVL-NNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC------CCc-----c-hHHHHHHHHHHHHhCCCEEE-cCcEEEEE
Confidence 47899999999999999999999999999987521 111 0 12345667777888886653 36788888
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+...+.+.... + ++.+|.+|+|+|..|+..
T Consensus 255 ~~~~~~~~v~~~~-------g--~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 255 EHDDNGFVLTTGH-------G--ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEeCCEEEEEEcC-------C--eEEeCEEEEccCCCCCcc
Confidence 7665555554321 1 688999999999998765
No 198
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.00 E-value=3.5e-05 Score=83.47 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+|+||++.+.+. +. . ..++...+.++++ .++++. ...+|+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~-d~~~~~~l~~~~~-~gI~i~-~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-----RH-----L-DEDISDRFTEIAK-KKWDIR-LGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-----cc-----c-CHHHHHHHHHHHh-cCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999886532 10 1 1233344545443 465553 47789999
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+++.+.+.... + .++.+|.|++|+|.+|+...
T Consensus 236 ~~~~~~v~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 236 EQDGDGVTLTLDD-----G---STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEcCCeEEEEEcC-----C---CEEEcCEEEEeeccCcCCCC
Confidence 8765555443221 1 17999999999999987643
No 199
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.00 E-value=2.6e-05 Score=82.54 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=31.0
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~~ 92 (583)
+|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
No 200
>PLN02612 phytoene desaturase
Probab=97.99 E-value=0.00064 Score=75.73 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
....+++|+|||||++|++||.+|.+.|++|+|+|++++.++..
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 34456899999999999999999999999999999998876643
No 201
>PRK05868 hypothetical protein; Validated
Probab=97.99 E-value=3.8e-05 Score=81.03 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
|++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 469999999999999999999999999999988543
No 202
>PRK06753 hypothetical protein; Provisional
Probab=97.98 E-value=1.6e-05 Score=83.77 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=31.8
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999998865
No 203
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.98 E-value=3.9e-05 Score=85.26 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
..+.+|+|||||++|+++|..|++.|++|+|||+++..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 35679999999999999999999999999999998643
No 204
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.98 E-value=0.00024 Score=77.42 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.1
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
+|+|||||++|+++|..|.+.|++|+|+|+++..++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999887653
No 205
>PRK07588 hypothetical protein; Provisional
Probab=97.97 E-value=2.5e-05 Score=82.96 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=32.1
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 38999999999999999999999999999988643
No 206
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.97 E-value=3.7e-05 Score=81.84 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.+|+||||||||++||..|++.|++|+|||++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998754
No 207
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.97 E-value=4e-05 Score=80.68 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.1
Q ss_pred eEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
+|+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 699999999999999999865 999999999863
No 208
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.97 E-value=5e-06 Score=64.69 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.5
Q ss_pred EECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 63 VLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 63 IIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
|||||++||++|..|++.|++|+|+|+++..++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999887654
No 209
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.97 E-value=1.4e-05 Score=77.19 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
+.+|+|||+|++|++||..|+..|++|||+||.
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg 33 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKG 33 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence 357999999999999999999999999999987
No 210
>PRK08013 oxidoreductase; Provisional
Probab=97.95 E-value=3.8e-05 Score=81.89 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 357999999999999999999999999999998764
No 211
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.95 E-value=2.9e-05 Score=82.68 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=66.6
Q ss_pred EEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc--------------hh---hhcc--------------------
Q 007975 62 VVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL--------------LP---SVTC-------------------- 104 (583)
Q Consensus 62 VIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~--------------l~---~~~~-------------------- 104 (583)
+|||||++|++||..|++.|++|+|+|+++..+.... .. ....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999865432100 00 0000
Q ss_pred -----c---------cCC-----CcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecC
Q 007975 105 -----G---------TVE-----ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYD 165 (583)
Q Consensus 105 -----g---------~~~-----~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD 165 (583)
| ..- ..++...+.+.+++.++++. ...+|+.++.+...+.+.... ..+.+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~-~~~~V~~i~~~~~~~~v~~~~---------~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEIL-TNSKVKSIKKDDNGFGVETSG---------GEYEAD 150 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEE-eCCEEEEEEecCCeEEEEECC---------cEEEcC
Confidence 0 000 01223344555666676653 467888887766555444321 168999
Q ss_pred EEEEccCCCC
Q 007975 166 YLVIAMGARA 175 (583)
Q Consensus 166 ~LViAtG~~~ 175 (583)
+||+|+|...
T Consensus 151 ~VIlAtG~~s 160 (400)
T TIGR00275 151 KVILATGGLS 160 (400)
T ss_pred EEEECCCCcc
Confidence 9999999864
No 212
>PLN02985 squalene monooxygenase
Probab=97.94 E-value=7.6e-05 Score=81.90 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
....++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3456799999999999999999999999999999874
No 213
>PRK06185 hypothetical protein; Provisional
Probab=97.93 E-value=4.6e-05 Score=81.40 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+.++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 458999999999999999999999999999998753
No 214
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=4.2e-05 Score=83.31 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+||||++.+... +. . ..++...+.+.+++. +++. ...+|+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-----~~-----~-d~~~~~~~~~~l~~~-v~i~-~~~~v~~i 240 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-----PA-----A-DKDIVKVFTKRIKKQ-FNIM-LETKVTAV 240 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-----Cc-----C-CHHHHHHHHHHHhhc-eEEE-cCCEEEEE
Confidence 4799999999999999999999999999999887532 11 1 123444555666555 6663 47788888
Q ss_pred ecCCCEEEE--ecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKKVYC--RSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~v~~--~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.....+.+ .++. .+..++++|.+|+|+|.+|+..
T Consensus 241 ~~~~~~~~v~~~~~~------~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 241 EAKEDGIYVTMEGKK------APAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEcCCEEEEEEEeCC------CcceEEEeCEEEEeecccccCC
Confidence 765444433 3221 1123799999999999998864
No 215
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.93 E-value=5.7e-05 Score=82.15 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+++|||||||.||++||..+++.|.+|+||||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999864
No 216
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.93 E-value=4.7e-05 Score=84.41 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=33.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+..++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 217
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.92 E-value=0.0001 Score=81.26 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=73.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecC--Ccc--------cC----cccHHHHHHHHHH
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHI--------LN----MFDKRITAFAEEK 287 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~--~~i--------l~----~~~~~~~~~~~~~ 287 (583)
...+|+|||||+.|+.+|..+++. +.+|++++.. .++ ++ ...+++.+.+.+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 275 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARK--------------GIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEH 275 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHH
Confidence 345999999999999999999875 5788888642 111 11 1346788899999
Q ss_pred HHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 288 FSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 288 L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+++.|++++.+++|..++.+ ...+.. .+|++ +.+|.||+|+|..+
T Consensus 276 ~~~~gv~i~~~~~V~~I~~~~~~~~V~~-~~g~~--i~a~~vViAtG~~~ 322 (517)
T PRK15317 276 VKEYDVDIMNLQRASKLEPAAGLIEVEL-ANGAV--LKAKTVILATGARW 322 (517)
T ss_pred HHHCCCEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEcCEEEECCCCCc
Confidence 99999999999999999753 444433 34654 99999999999654
No 218
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.92 E-value=3.2e-05 Score=82.08 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
..+|+|||||++|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 579999999999999999999999999999998
No 219
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.91 E-value=4.5e-05 Score=83.15 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=71.6
Q ss_pred CCeEEEECCcHHHHHHHHhc---CCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNL---NNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L---~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
.++|+|||||+.|+.+|..+ .+.|.+||||++.+... +. ...++...+.+.+++.++++. ....+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~~------~d~~~~~~l~~~L~~~GI~i~-~~~~v 254 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----RG------FDSTLRKELTKQLRANGINIM-TNENP 254 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----cc------cCHHHHHHHHHHHHHcCCEEE-cCCEE
Confidence 57999999999999999655 34589999999886532 11 122556677788888887663 46778
Q ss_pred EEEecCC-C--EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 135 FKIDAEN-K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 135 ~~id~~~-~--~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.++.+. . .+.+.++. ++++|.+++|+|..|+..
T Consensus 255 ~~i~~~~~~~~~v~~~~g~----------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 255 AKVTLNADGSKHVTFESGK----------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEcCCceEEEEEcCCC----------EEEcCEEEEeeCCCcCcc
Confidence 8887542 2 34443221 799999999999998764
No 220
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.91 E-value=3.1e-05 Score=82.54 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 37899999999999999999999999999998864
No 221
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.91 E-value=5.1e-05 Score=82.79 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=70.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+|+|+++. . .. +. ...++...+.+.+++.++++. .+..+..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-~l----~~------~d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 246 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-LL----RG------FDQDCANKVGEHMEEHGVKFK-RQFVPIKV 246 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-cc----cc------cCHHHHHHHHHHHHHcCCEEE-eCceEEEE
Confidence 468999999999999999999999999999864 2 11 11 112445667778888887663 35566677
Q ss_pred ecCCCE--EEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENKK--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~~--v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+..... +.+.++. +..++++|.+++|+|..|+..
T Consensus 247 ~~~~~~~~v~~~~~~-------~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 247 EQIEAKVKVTFTDST-------NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEcCCeEEEEEecCC-------cceEEEeCEEEEEecCCcCCC
Confidence 654433 3333321 113799999999999998764
No 222
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.91 E-value=0.00071 Score=67.67 Aligned_cols=90 Identities=12% Similarity=0.205 Sum_probs=59.7
Q ss_pred hHhHhhhcCC-CC-CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe----CCeEEEEEcCCCeeE
Q 007975 247 DEDLFKLYPK-VK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT----DKEIFTKVRGNGETS 320 (583)
Q Consensus 247 ~~~~~~~~p~-~~-~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~----~~~v~~~~~~~G~~~ 320 (583)
.+.+.+.||. .+ +.-.+-++.....+. ......+.++..+++.|+.++.+..|+.++ ++..+...+.+|..
T Consensus 122 seEvrk~fP~~~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~- 198 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI- 198 (399)
T ss_pred HHHHHHhCCCCccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCe-
Confidence 4567788883 32 334444444333322 234566788899999999999999999886 44444333456875
Q ss_pred EeecceEEEccCCCCchhHHHHHH
Q 007975 321 SMPYGMVVWSTGIAPHAIIKDFMK 344 (583)
Q Consensus 321 ~i~~D~vI~a~G~~~~p~~~~l~~ 344 (583)
+.++.+|+++| +++..++.
T Consensus 199 -Y~akkiI~t~G----aWi~klL~ 217 (399)
T KOG2820|consen 199 -YHAKKIIFTVG----AWINKLLP 217 (399)
T ss_pred -eecceEEEEec----HHHHhhcC
Confidence 88999999999 34444543
No 223
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.91 E-value=0.0001 Score=81.26 Aligned_cols=98 Identities=19% Similarity=0.260 Sum_probs=73.6
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecC--Cccc-----------C-cccHHHHHHHHH
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA--DHIL-----------N-MFDKRITAFAEE 286 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~--~~il-----------~-~~~~~~~~~~~~ 286 (583)
....+|+|||||+.|+.+|..+++. +.+|++++.. .++. + ...+++.+.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~--------------G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK--------------GLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence 3456999999999999999999885 5789888631 1111 1 234677888889
Q ss_pred HHHhCCCEEEeCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 287 KFSRDGIDVKLGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 287 ~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+++.||+++++++|++++.+ ...+.. .+|+. +.+|.+|+|+|..+
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~-~~g~~--i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTL-ESGEV--LKAKSVIVATGARW 323 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEECCCCCc
Confidence 999999999999999998643 344443 34654 99999999999653
No 224
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.90 E-value=4.5e-05 Score=88.06 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=72.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|||||||+.|+.+|..|++.|.+|+||++.+... +. .+ .......+.+.+++.|+++. ....++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-----~~----~l-d~~~~~~l~~~l~~~GV~v~-~~~~v~~i 208 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-----AK----QL-DQTAGRLLQRELEQKGLTFL-LEKDTVEI 208 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-----hh----hc-CHHHHHHHHHHHHHcCCEEE-eCCceEEE
Confidence 4789999999999999999999999999999876421 11 01 11334556777888887764 46667788
Q ss_pred ecCCC--EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENK--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~--~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
..+.+ .|.+.++. ++++|.+|+|+|.+|+..
T Consensus 209 ~~~~~~~~v~~~dG~----------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 209 VGATKADRIRFKDGS----------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EcCCceEEEEECCCC----------EEEcCEEEECCCCCcCcH
Confidence 65543 34444332 899999999999998753
No 225
>PTZ00058 glutathione reductase; Provisional
Probab=97.90 E-value=5.7e-05 Score=83.46 Aligned_cols=102 Identities=19% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|.+.|.+||||++.+.+. +. . ..++...+.+.+++.++++. ...++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-----~~-----~-d~~i~~~l~~~L~~~GV~i~-~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-----RK-----F-DETIINELENDMKKNNINII-THANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-----cc-----C-CHHHHHHHHHHHHHCCCEEE-eCCEEEEE
Confidence 5799999999999999999999999999999886422 11 1 12455667778888887763 46778888
Q ss_pred ecCCC-EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+.. .+.+.... + ..++.+|.|++|+|..|+..
T Consensus 305 ~~~~~~~v~v~~~~-----~--~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 305 EKVKEKNLTIYLSD-----G--RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EecCCCcEEEEECC-----C--CEEEECCEEEECcCCCCCcc
Confidence 76432 23322111 1 13799999999999988754
No 226
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.90 E-value=5.4e-06 Score=89.10 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=31.1
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh------h------hccc----------------------
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP------S------VTCG---------------------- 105 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~------~------~~~g---------------------- 105 (583)
||||||||+||++||..+++.|.+|+|||+.+.+++..... . ...|
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 69999999999999999999999999999998876532100 0 0000
Q ss_pred -----cCCCcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCE---EEEecCCCCCCCCCceEEeecCEEEEccCC
Q 007975 106 -----TVEARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKK---VYCRSSQNTNLNGKEEFCMDYDYLVIAMGA 173 (583)
Q Consensus 106 -----~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~---v~~~~~~~~~~~~~~~~~i~yD~LViAtG~ 173 (583)
..++.....-+.+++.+.|+++ +.++.|..+..+++. |.+.+.. +..++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v-~~~t~v~~v~~~~~~i~~V~~~~~~-------g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV-LLGTRVVDVIRDGGRITGVIVETKS-------GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-------cccccccccccccccc
Confidence 0111222223455566667666 357788888877643 3333221 2348999999999994
No 227
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.90 E-value=4e-05 Score=81.24 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4699999999999999999999999999999874
No 228
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.90 E-value=6.3e-05 Score=82.46 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||||+.|+.+|..|++.|.+||||++... +..+ ..++...+.+.+++.++++. ....+..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--l~~~----------d~~~~~~l~~~l~~~GV~i~-~~~~v~~v 248 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--LRGF----------DRQCSEKVVEYMKEQGTLFL-EGVVPINI 248 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--cccC----------CHHHHHHHHHHHHHcCCEEE-cCCeEEEE
Confidence 46899999999999999999999999999986421 1111 12345667778888886653 35566677
Q ss_pred ecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 138 DAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 138 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
...+..+.+.... + .++.+|.|++|+|..|+...
T Consensus 249 ~~~~~~~~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 249 EKMDDKIKVLFSD-----G---TTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEcCCeEEEEECC-----C---CEEEcCEEEEeeCCCCCccc
Confidence 6543333332211 1 16899999999999988653
No 229
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.90 E-value=0.00025 Score=75.97 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEE--eCCe---EEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKV--TDKE---IFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~~~---v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
...+.+.+.+.+++.||+|+++++++++ +++. +.+.+..+|+...+.++.||+|+|-..
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 4677888899999999999999999998 3444 445544568877899999999999433
No 230
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.90 E-value=8.6e-05 Score=81.60 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
...+|||||+|.||++||..+++.|.+|+||||.+..+
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 35799999999999999999999999999999986543
No 231
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00014 Score=77.07 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=33.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+++.+|||||||++|+++|++|++.|.+|+|||++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 3568999999999999999999999999999998864
No 232
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.88 E-value=0.00011 Score=70.27 Aligned_cols=96 Identities=25% Similarity=0.387 Sum_probs=61.4
Q ss_pred EEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce-EEEEecCCccc--------------Cc----------------
Q 007975 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHIL--------------NM---------------- 275 (583)
Q Consensus 227 vVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~il--------------~~---------------- 275 (583)
+|||||++|+-+|..|.+. +.+ |+++|+.+.+. |.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--------------g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--------------GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--------------T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhC--------------CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 6999999999999999876 345 88888764421 00
Q ss_pred -------------ccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhH
Q 007975 276 -------------FDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII 339 (583)
Q Consensus 276 -------------~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~ 339 (583)
..+++.+++++..++.+++++++++|++++ +++.++.. .+++ ++.||.||+|+|....|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~--~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGR--TIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS---EEEEEEEEE---SSCSB--
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecc--eeeeeeEEEeeeccCCCCc
Confidence 013456788888889999999999999996 34444443 4464 3889999999997556654
No 233
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.88 E-value=7e-06 Score=77.47 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~ 124 (583)
..+|+||||||+|++||++|++.|++|+|||++..+++....-..... .--+..+-..++++.+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~---~iVVq~~a~~iL~elg 80 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFN---KIVVQEEADEILDELG 80 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccc---hhhhhhhHHHHHHhCC
Confidence 579999999999999999999999999999999876654221111111 1123445667777777
No 234
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.88 E-value=5.2e-05 Score=80.96 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
..++|+|||||++|+++|..|++.|++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3579999999999999999999999999999986
No 235
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.87 E-value=0.00022 Score=77.02 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhcCC----CCCeEEEEcCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNN----PSYDVQVISPRN 91 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~----~g~~Vtlie~~~ 91 (583)
++|+|||||++|+++|..|++ .|++|+|||+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 479999999999999999997 799999999964
No 236
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.87 E-value=6e-05 Score=80.97 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=70.8
Q ss_pred CeEEEECCcHHHHHHHHhcCC--------------CCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNN--------------PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~--------------~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~ 124 (583)
++|+|||||+.|+.+|..|+. .+.+|+||++.+... +. . ...+...+.+.+++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-----~~-----~-~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-----GS-----F-DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-----cc-----C-CHHHHHHHHHHHHHCC
Confidence 489999999999999988863 478999999886532 11 1 1245566778888898
Q ss_pred CcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCC
Q 007975 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARAN 176 (583)
Q Consensus 125 i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~ 176 (583)
+++. ...+|..++.+ .|.++++. ++++|.+|+++|..|+
T Consensus 243 V~v~-~~~~v~~v~~~--~v~~~~g~----------~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDIR-TKTAVKEVLDK--EVVLKDGE----------VIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEEE-eCCeEEEEeCC--EEEECCCC----------EEEccEEEEccCCCCc
Confidence 6653 47789888754 57666543 8999999999998875
No 237
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.87 E-value=3.2e-05 Score=82.86 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=31.0
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYF 93 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~~~ 93 (583)
+|+|||||++|+++|..|++.| ++|+|+|+.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 7999999999999999999887 599999998654
No 238
>PRK06996 hypothetical protein; Provisional
Probab=97.87 E-value=4.9e-05 Score=81.02 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCC----CeEEEEcCCC
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPS----YDVQVISPRN 91 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g----~~Vtlie~~~ 91 (583)
+..+.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 5556789999999999999999999876 5799999864
No 239
>PRK10262 thioredoxin reductase; Provisional
Probab=97.87 E-value=7.6e-05 Score=77.08 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+... ..+...+.+.+++.++++. ....++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~~~~~~~l~~~gV~i~-~~~~v~~v 211 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLMDKVENGNIILH-TNRTLEEV 211 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHHHHHHhhccCCCeEEE-eCCEEEEE
Confidence 579999999999999999999889999999988653110 1223445566667775542 35788888
Q ss_pred ecCCC---EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 138 DAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 138 d~~~~---~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+.+.. .|.+.+... +.+..++++|.||+++|..|+..
T Consensus 212 ~~~~~~~~~v~~~~~~~----~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 212 TGDQMGVTGVRLRDTQN----SDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EcCCccEEEEEEEEcCC----CCeEEEEECCEEEEEeCCccChh
Confidence 77643 355543321 11234799999999999998764
No 240
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=5.5e-05 Score=82.24 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=74.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||||+.|+.+|..|.+.|.+|+||++.+.+. + . ...++...+.+.+++. +++. .+.++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l--~---~------~d~~~~~~~~~~l~~~-I~i~-~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL--P---L------EDPEVSKQAQKILSKE-FKIK-LGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC--c---c------hhHHHHHHHHHHHhhc-cEEE-cCCEEEE
Confidence 35799999999999999999999999999999887532 1 0 1124455666667766 7763 4778888
Q ss_pred EecCCC-EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 137 IDAENK-KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 137 id~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
++.+.+ .+.+.... .+..++.+|.+++|+|..|+..
T Consensus 235 i~~~~~~~v~~~~~~------~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 235 VEKSGDEKVEELEKG------GKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEcCCceEEEEEcC------CceEEEEeCEEEEccCCccCCC
Confidence 876544 45442111 1123799999999999998865
No 241
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.86 E-value=6.1e-05 Score=79.22 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=67.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc--Cccc---------HHHHHHHHHHHHhCCC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--NMFD---------KRITAFAEEKFSRDGI 293 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il--~~~~---------~~~~~~~~~~L~~~GV 293 (583)
+|||||||+.|+.+|..+.+.. .++.+|+||++.+... +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 5899999999999988775421 1368999999887632 1111 2233344566778899
Q ss_pred EEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 294 DVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 294 ~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
+++.+ +|+.++.+.-++.. .+|++ +.+|.+|+|+|..+.
T Consensus 70 ~~~~~-~v~~id~~~~~V~~-~~g~~--~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIA-EATGIDPDRRKVLL-ANRPP--LSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEE-EEEEEecccCEEEE-CCCCc--ccccEEEEccCCCCC
Confidence 99886 79999854323322 34664 999999999996543
No 242
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.85 E-value=0.00015 Score=79.59 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=30.9
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
++|+|||||+||+.+|..+++.|.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 489999999999999999999999999999874
No 243
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.85 E-value=7.7e-05 Score=86.33 Aligned_cols=99 Identities=24% Similarity=0.451 Sum_probs=70.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc------Cc-c----cHHHHHHHHHHHHhCC
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------NM-F----DKRITAFAEEKFSRDG 292 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il------~~-~----~~~~~~~~~~~L~~~G 292 (583)
++|||||+|+.|+.+|..|.+... .++.+||+++..+++. +. + ...+.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999999876421 1357999999887742 11 1 1122222345678899
Q ss_pred CEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
|+++.++.|+.++.+..++.. .+|+. +.+|.+|+|||..+
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~-~~G~~--i~yD~LVIATGs~p 113 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHS-SAGRT--VFYDKLIMATGSYP 113 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEE-CCCcE--EECCEEEECCCCCc
Confidence 999999999999876544333 34664 99999999999644
No 244
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.84 E-value=5.3e-05 Score=81.96 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=67.2
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
...++|+|||+|+.|+++|..|++. +.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA--------------GHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 4567999999999999999999874 57999999876552 2 24566777777888999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
||++++++.+ +..+++.+ .. ..+|.||+|+|.
T Consensus 197 gv~~~~~~~v----~~~v~~~~---~~---~~yd~viiAtGa 228 (449)
T TIGR01316 197 GVTFRMNFLV----GKTATLEE---LF---SQYDAVFIGTGA 228 (449)
T ss_pred CcEEEeCCcc----CCcCCHHH---HH---hhCCEEEEeCCC
Confidence 9999999855 22222221 22 568999999996
No 245
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.84 E-value=4.1e-05 Score=83.09 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=68.6
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
...++|+|||||+.|+++|..|++. +.+|+++++.+.+. |. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~--------------g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK--------------GYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 4567999999999999999998764 57999999987753 22 3567777778889999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.+. ..+.+. +.. +.+|.||+|+|..
T Consensus 204 gv~~~~~~~v~----~~v~~~---~~~---~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEVG----RDITLD---ELR---AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEEC----CccCHH---HHH---hhCCEEEEccCCC
Confidence 99999998762 112221 122 6799999999964
No 246
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00021 Score=74.52 Aligned_cols=45 Identities=29% Similarity=0.458 Sum_probs=40.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP 100 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~ 100 (583)
....+|+|||+|++||++|+.|.+.|++|+|+|.++++++....-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~ 49 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTA 49 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEE
Confidence 456899999999999999999999999999999999988865443
No 247
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.82 E-value=6.9e-05 Score=79.61 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999874
No 248
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.80 E-value=6.4e-05 Score=79.42 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
+.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 368999999999999999999999999999976
No 249
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.80 E-value=0.00025 Score=76.77 Aligned_cols=137 Identities=17% Similarity=0.269 Sum_probs=85.6
Q ss_pred cceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-----------------------------
Q 007975 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL----------------------------- 273 (583)
Q Consensus 223 ~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il----------------------------- 273 (583)
.++|+|||||++|+-+|..+.+. +.+|+++|+.+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~--------------G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE--------------GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc--------------CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 46999999999999999998764 56788877654321
Q ss_pred ----------------Cc-------------c--cHHHHHHHHHHHHhCCCE--EEeCCeEEEEeC--CeEEEEEcCC-C
Q 007975 274 ----------------NM-------------F--DKRITAFAEEKFSRDGID--VKLGSMVVKVTD--KEIFTKVRGN-G 317 (583)
Q Consensus 274 ----------------~~-------------~--~~~~~~~~~~~L~~~GV~--v~~~~~V~~v~~--~~v~~~~~~~-G 317 (583)
|. | ..++.+++++..++.|++ |+++++|++|+. +..++....+ +
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 00 0 135677888888888988 899999999975 3344433222 2
Q ss_pred eeEEeecceEEEccCCCCchhHHHHHHHhCcC-CCcceEeCCCCccC---CCCCEEEcCcccc
Q 007975 318 ETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQT-NRRALATDEWLRVE---GSDSIYALGDCAT 376 (583)
Q Consensus 318 ~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~~-~~g~i~Vd~~l~~~---~~~~VyAiGD~a~ 376 (583)
...+..+|.||+|+|....|....+ -|++ -.|.+.--..++.+ ...+|-++|-..+
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~~P~i---pG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPNVAHI---PGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCcCCCC---CCcccCCceEEEecccCCccccCCCEEEEECCCcC
Confidence 3334679999999996544543222 1221 12322211223321 2357888887654
No 250
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.79 E-value=0.00029 Score=76.03 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEeC-C---eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhC-----
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVTD-K---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVG----- 347 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~-~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~----- 347 (583)
+.++.-.......++|-+++..++|+.+.. + +|.+.+..+|++.++.++.||-|+| |+..+++...+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG----pW~d~i~~~~~~~~~~ 238 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG----PWVDEILEMAGLEQSP 238 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCC----ccHHHHHHhhcccCCC
Confidence 346666777778899999999999999853 2 3677777778888899999999999 45555554442
Q ss_pred ---c-CCCc-ceEeCCCC
Q 007975 348 ---Q-TNRR-ALATDEWL 360 (583)
Q Consensus 348 ---~-~~~g-~i~Vd~~l 360 (583)
+ ..+| .|+|+..+
T Consensus 239 ~~~vr~skGsHlVv~~~~ 256 (532)
T COG0578 239 HIGVRPSKGSHLVVDKKF 256 (532)
T ss_pred CccceeccceEEEecccC
Confidence 2 2345 57777733
No 251
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.78 E-value=0.00012 Score=84.92 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||||+.|+.+|..|++. +.+|+++++.+.+. |. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~--------------G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA--------------GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 4678999999999999999999875 57999999887542 22 2344555556778889
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
||++++++.+ .+ .+.. .. ...+|.||+|+|...
T Consensus 603 GVe~~~gt~V-di-----~le~---L~--~~gYDaVILATGA~~ 635 (1019)
T PRK09853 603 GVKFEFGCSP-DL-----TVEQ---LK--NEGYDYVVVAIGADK 635 (1019)
T ss_pred CCEEEeCcee-EE-----Ehhh---he--eccCCEEEECcCCCC
Confidence 9999999876 22 2221 22 266999999999653
No 252
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.77 E-value=9.4e-05 Score=84.12 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
..+|+|||||.+|+++|+.|++.|++|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999874
No 253
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.77 E-value=0.00031 Score=71.04 Aligned_cols=93 Identities=26% Similarity=0.422 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC------------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~------------------------------ 274 (583)
.|+|||||++|+-+|..|++. +.+|+++++.+..-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~--------------g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK--------------GLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 689999999999999999764 568888887743210
Q ss_pred --------------------cccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccC
Q 007975 275 --------------------MFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 275 --------------------~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
-....+.+.+.+.+++.|++++.+++++++. ++.+++....++. ++.+|.||.|.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~a~~vv~a~G 145 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEG--TVTAKIVIGADG 145 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccE--EEEeCEEEECCC
Confidence 0123456777788888999999999999874 4555554322233 499999999999
Q ss_pred C
Q 007975 333 I 333 (583)
Q Consensus 333 ~ 333 (583)
.
T Consensus 146 ~ 146 (295)
T TIGR02032 146 S 146 (295)
T ss_pred c
Confidence 4
No 254
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.77 E-value=0.001 Score=66.44 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcC----CCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~----~~g~~Vtlie~~~~~ 93 (583)
...+|||||||-.|.+.|..|+ +.|++|+|||++..+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 3568999999999999999997 457999999998643
No 255
>PRK06847 hypothetical protein; Provisional
Probab=97.76 E-value=0.00033 Score=73.93 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+.+.+.+.+++.|++++.+++|++++. +.+.+.. .+|++ +.+|.||.|.|..+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTF-SDGTT--GRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEE-cCCCE--EEcCEEEECcCCCc
Confidence 45567777778888999999999999863 4455543 44664 89999999999543
No 256
>PLN02661 Putative thiazole synthesis
Probab=97.75 E-value=0.00018 Score=73.96 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCeEEEECCcHHHHHHHHhcCC-CCCeEEEEcCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNYFAF 95 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~-~g~~Vtlie~~~~~~~ 95 (583)
..+|+|||||++|+.||+.|++ .|++|+|||++...++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 5699999999999999999985 4899999999876543
No 257
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.75 E-value=0.00012 Score=76.59 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFKI 137 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~i 137 (583)
..+||++|+|+.|+.+|..|...+.+||+|++.+.. ++. +-..++...+.+++.+.++.+. ..+.+.++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~-----~~~-----lf~~~i~~~~~~y~e~kgVk~~-~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL-----LPR-----LFGPSIGQFYEDYYENKGVKFY-LGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc-----hhh-----hhhHHHHHHHHHHHHhcCeEEE-Eecceeec
Confidence 568999999999999999999889999999998652 121 1123677888999999985542 45566667
Q ss_pred ecCC--C--EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCC
Q 007975 138 DAEN--K--KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTP 181 (583)
Q Consensus 138 d~~~--~--~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ip 181 (583)
+... + .|.+.++. ++++|-||+.+|++|+.....
T Consensus 282 ~~~~~Gev~~V~l~dg~----------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGK----------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred ccCCCCcEEEEEeccCC----------EeccCeEEEeecccccccccc
Confidence 6554 2 34444443 899999999999999876555
No 258
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.74 E-value=2.3e-05 Score=84.95 Aligned_cols=43 Identities=37% Similarity=0.501 Sum_probs=39.2
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
...++++|+|||||.|||+||++|...|++|+|+|.++..++.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4556789999999999999999999999999999999988775
No 259
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.73 E-value=0.00014 Score=79.10 Aligned_cols=91 Identities=22% Similarity=0.306 Sum_probs=67.8
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|+.|+.+|..++.. +.+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~--------------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARA--------------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAM 204 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHC
Confidence 3678999999999999999998874 57899999887652 2 23556666677889999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
||++++++.+.. .+.+. +. ...+|.||+|+|..+
T Consensus 205 Gv~~~~~~~v~~----~~~~~----~~--~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 205 GIEFHLNCEVGR----DISLD----DL--LEDYDAVFLGVGTYR 238 (467)
T ss_pred CCEEECCCEeCC----ccCHH----HH--HhcCCEEEEEeCCCC
Confidence 999999987632 11111 11 146999999999654
No 260
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.72 E-value=0.0012 Score=72.28 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=34.1
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
++|+|||+|++|+.+|+.|++.|++|+|||+....+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 4899999999999999999999999999999987663
No 261
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.72 E-value=0.0001 Score=86.28 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=69.6
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+||.|+.+|..|++. +.+||++++.+++. | .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~--------------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE--------------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 4588999999999999999999875 67999999987653 2 23556677777889999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++|+.+ +..+++.+ ... ..+|.||+|+|..
T Consensus 370 Gv~f~~n~~v----G~dit~~~---l~~--~~yDAV~LAtGA~ 403 (944)
T PRK12779 370 GGRFVKNFVV----GKTATLED---LKA--AGFWKIFVGTGAG 403 (944)
T ss_pred cCeEEEeEEe----ccEEeHHH---hcc--ccCCEEEEeCCCC
Confidence 9999999765 22334332 322 5699999999964
No 262
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.70 E-value=0.00034 Score=70.06 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
.+.+|.|||+|++||+||+.|.+ -++|||+|.+.+.++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-ccceEEEeccccccCcc
Confidence 45799999999999999999974 58999999998887754
No 263
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.70 E-value=0.0001 Score=77.26 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=66.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc---------ccHHHHHHHHHHHHhCC
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------FDKRITAFAEEKFSRDG 292 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~---------~~~~~~~~~~~~L~~~G 292 (583)
.+++|+|||+|+.|+++|..+++. +.+|+++++.+.+... ++.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL--------------GYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC--------------CCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 557999999999999999999864 5799999998776421 22333344556677789
Q ss_pred CEEEeCCeEEEEeC------CeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 293 IDVKLGSMVVKVTD------KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 293 V~v~~~~~V~~v~~------~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
|+++.++.+..++. +...... .+.+...+.+|.||+|+|.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERI-VSLEELVKKYDAVLIATGT 128 (352)
T ss_pred eEEecCcEEeecccccccccccccccc-CCHHHHHhhCCEEEEEeCC
Confidence 99999998866532 1111110 0111112789999999996
No 264
>PRK07538 hypothetical protein; Provisional
Probab=97.70 E-value=0.00014 Score=77.97 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 3799999999999999999999999999998864
No 265
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.69 E-value=7e-05 Score=78.40 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCC-------------CCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNN-------------PSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~-------------~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~ 124 (583)
.-.|+|||||+.|+.+|-.|+. ...+|+|||+.+... |.+ +.++....++.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--p~~---------~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--PMF---------PPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--cCC---------CHHHHHHHHHHHHHCC
Confidence 3579999999999999977751 135899999987532 111 2355667788999999
Q ss_pred CcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 125 i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+++. ++..|+.|+++ .|++.++. .+++++.+|-|+|.+++..
T Consensus 224 V~v~-l~~~Vt~v~~~--~v~~~~g~---------~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 224 VEVL-LGTPVTEVTPD--GVTLKDGE---------EEIPADTVVWAAGVRASPL 265 (405)
T ss_pred CEEE-cCCceEEECCC--cEEEccCC---------eeEecCEEEEcCCCcCChh
Confidence 8885 68899999876 56666543 1599999999999986543
No 266
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.69 E-value=0.00011 Score=77.91 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
.+|+|||||.+|++||..|++.|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999998765
No 267
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.69 E-value=0.0001 Score=70.28 Aligned_cols=139 Identities=26% Similarity=0.487 Sum_probs=94.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc---CcccH-----------HHH--H--HHHH
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL---NMFDK-----------RIT--A--FAEE 286 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il---~~~~~-----------~~~--~--~~~~ 286 (583)
+|+|||||+.|+.+|..|.+. +.+|++++..+..- ..+.. ... + .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--------------~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--------------GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcC--------------CCeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999853 68999998766321 11100 011 1 3344
Q ss_pred HHHhCCCEEEeCCeEEEEeCCe-------EEEEEcCCCeeEEeecceEEEccCCCCc-hhH---------------HHHH
Q 007975 287 KFSRDGIDVKLGSMVVKVTDKE-------IFTKVRGNGETSSMPYGMVVWSTGIAPH-AII---------------KDFM 343 (583)
Q Consensus 287 ~L~~~GV~v~~~~~V~~v~~~~-------v~~~~~~~G~~~~i~~D~vI~a~G~~~~-p~~---------------~~l~ 343 (583)
.+...+++++.++++.+++... +.+....+++..++++|.+|+|+|..+. |.+ ..+.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 5577899999999999996432 1222112244446999999999996533 111 1111
Q ss_pred ------------------HHhCc--CCCcceEeCCCCccCCCCCEEEcCcccccc
Q 007975 344 ------------------KQVGQ--TNRRALATDEWLRVEGSDSIYALGDCATVN 378 (583)
Q Consensus 344 ------------------~~~~~--~~~g~i~Vd~~l~~~~~~~VyAiGD~a~~~ 378 (583)
+..++ +.+|++.||+++|+ +.|+|||+|||+..+
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccC
Confidence 34444 57899999999999 799999999999753
No 268
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.66 E-value=0.00017 Score=80.91 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHH-HHhCCCcEEEEEeEEEE
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNI-VRKKNVDICFWEAECFK 136 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~-~~~~~i~v~~~~~~v~~ 136 (583)
.++|+|||||+.|+.+|..|...|.+||||++.+.+.- .. ..++...+... +++.++++. ....|..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~----------~~-d~eis~~l~~~ll~~~GV~I~-~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP----------LL-DADVAKYFERVFLKSKPVRVH-LNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc----------cC-CHHHHHHHHHHHhhcCCcEEE-cCCEEEE
Confidence 46899999999999999999999999999999876321 01 11334444554 356776663 4778888
Q ss_pred EecCCC--EEEEecCCC--CCCCC-----CceEEeecCEEEEccCCCCCCCC
Q 007975 137 IDAENK--KVYCRSSQN--TNLNG-----KEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 137 id~~~~--~v~~~~~~~--~~~~~-----~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
|+..+. .+.+..... .+..+ ....++.+|.|++|+|.+|+...
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 876542 244321100 00000 01137999999999999988643
No 269
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.65 E-value=0.00085 Score=75.54 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEe-C--Ce---EEEEEcCCCeeEEeecceEEEccCC
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT-D--KE---IFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~-~--~~---v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+..+...+.+.+.+.||+++.++.++++- . +. +...+..+|+...+.++.||+|+|-
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 45566777777778899999999999953 2 33 3333434677667899999999983
No 270
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.65 E-value=0.0019 Score=69.41 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
...+|||||+|.+|+.+|..|++.|.+|.++|+++++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGES 43 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccc
Confidence 45899999999999999999999999999999999988753
No 271
>PLN02546 glutathione reductase
Probab=97.64 E-value=0.00024 Score=78.59 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||||+.|+.+|..|...+.+|+||++.+... +. ...++...+.+.+++.|+++. ...++..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~~------~d~~~~~~l~~~L~~~GV~i~-~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----RG------FDEEVRDFVAEQMSLRGIEFH-TEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----cc------cCHHHHHHHHHHHHHCCcEEE-eCCEEEE
Confidence 35799999999999999999998899999999876422 11 122445566677888886653 4677888
Q ss_pred EecC-CCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 137 IDAE-NKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 137 id~~-~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
+... +..+.+.... .....+|.+|+|+|..|+..
T Consensus 319 i~~~~~g~v~v~~~~--------g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 319 IIKSADGSLSLKTNK--------GTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEcCCCEEEEEECC--------eEEEecCEEEEeeccccCCC
Confidence 8643 3344443221 11345899999999998764
No 272
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.64 E-value=0.00025 Score=76.61 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.5
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYF 93 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~~~ 93 (583)
+|||||||.||++||..+++.| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999988654
No 273
>PRK12831 putative oxidoreductase; Provisional
Probab=97.63 E-value=0.00017 Score=78.27 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=66.0
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccH-HHHHHHHHHHHh
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDK-RITAFAEEKFSR 290 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~-~~~~~~~~~L~~ 290 (583)
..+++|+|||+|+.|+.+|..+++. +.+|+++++.+.+. |. ++. .+.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM--------------GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 5778999999999999999999885 57999999876532 21 122 355666678889
Q ss_pred CCCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 291 DGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.||++++++.+. ..+.+.+ ... ++.+|.||+|+|.
T Consensus 204 ~gv~i~~~~~v~----~~v~~~~---~~~-~~~~d~viiAtGa 238 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTIDE---LLE-EEGFDAVFIGSGA 238 (464)
T ss_pred cCCEEEcCCEEC----CcCCHHH---HHh-ccCCCEEEEeCCC
Confidence 999999998662 1222211 211 2679999999996
No 274
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.63 E-value=0.00021 Score=72.35 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=80.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEE
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECF 135 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~ 135 (583)
.-+++++|||||+.||..+.-..+.|.+||+||-.+.... .+ ..++...++.++.+.++.+. +.++|.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~----------~m-D~Eisk~~qr~L~kQgikF~-l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG----------VM-DGEISKAFQRVLQKQGIKFK-LGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc----------cc-CHHHHHHHHHHHHhcCceeE-eccEEE
Confidence 4478999999999999999888899999999996554321 11 22567778888989997764 588899
Q ss_pred EEecCCC-E--EEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 136 KIDAENK-K--VYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 136 ~id~~~~-~--v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
..++... . +.+.+.. +++..++++|.|.+++|-+|..-
T Consensus 277 ~a~~~~dg~v~i~ve~ak-----~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAK-----TGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EeeccCCCceEEEEEecC-----CCceeEEEeeEEEEEccCccccc
Confidence 9988766 3 4444433 23356899999999999998753
No 275
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=4.1e-05 Score=81.14 Aligned_cols=40 Identities=25% Similarity=0.397 Sum_probs=37.1
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~ 98 (583)
+||+|+|||+|||+||+.|+++|++|||+|.+++.++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence 5899999999999999999999999999999999888643
No 276
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.61 E-value=0.0027 Score=71.41 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=42.2
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CC-e---EEEEEcCCCeeEEeecceEEEccC
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DK-E---IFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~---v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
+..+...+.+.+++.||+++.++.++++- ++ . +...+..+|+...+.++.||+|+|
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 45677777788888999999999999953 33 3 333344567766789999999997
No 277
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0017 Score=64.74 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=50.1
Q ss_pred CceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccC
Q 007975 260 SVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 260 ~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
++.+..+-..|--+ ++-++.+.+.+.++..|.-++.+.+|...+ ++.|+...+.+.....+.+|..|+|+|
T Consensus 242 ~~~l~elPtlPPSl--lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsG 314 (421)
T COG3075 242 GLALFELPTLPPSL--LGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASG 314 (421)
T ss_pred CCceeecCCCCcch--hhhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecc
Confidence 35555553332111 345788999999999999999999998875 566665544445544577999999999
No 278
>PRK07236 hypothetical protein; Provisional
Probab=97.59 E-value=0.00051 Score=72.88 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=66.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc------ccHHHHHHH-------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM------FDKRITAFA------------- 284 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~------~~~~~~~~~------------- 284 (583)
.+|+|||||++|+.+|..|++. +.+|+|+|+.+...+. +.+...+.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--------------G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--------------GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--------------CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 4999999999999999999874 6789999887644321 122221111
Q ss_pred ------------------------------HHHHHh--CCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEc
Q 007975 285 ------------------------------EEKFSR--DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWS 330 (583)
Q Consensus 285 ------------------------------~~~L~~--~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a 330 (583)
.+.|.+ .+++++.+++|++++. +++++.. .+|++ +.+|.||.|
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vIgA 149 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARF-ADGRR--ETADLLVGA 149 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEEC
Confidence 111211 1356899999999863 4565554 45764 999999999
Q ss_pred cCCCCchhHHH
Q 007975 331 TGIAPHAIIKD 341 (583)
Q Consensus 331 ~G~~~~p~~~~ 341 (583)
-|. +..+..
T Consensus 150 DG~--~S~vR~ 158 (386)
T PRK07236 150 DGG--RSTVRA 158 (386)
T ss_pred CCC--CchHHH
Confidence 995 444433
No 279
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.57 E-value=0.00023 Score=82.17 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=66.9
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||||+.|+.+|..|++. +.+|+++++.+.+. |. ++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR--------------GYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 67999999865432 21 3455666666788899
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
||++++++.+ +..+++.+ .. ...+|.||+|+|.
T Consensus 495 gv~~~~~~~v----~~~v~~~~---l~--~~~ydavvlAtGa 527 (752)
T PRK12778 495 GVKFETDVIV----GKTITIEE---LE--EEGFKGIFIASGA 527 (752)
T ss_pred CCEEECCCEE----CCcCCHHH---Hh--hcCCCEEEEeCCC
Confidence 9999999765 22233322 22 2669999999996
No 280
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.57 E-value=0.00066 Score=74.66 Aligned_cols=138 Identities=18% Similarity=0.319 Sum_probs=87.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc----------------------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM---------------------------- 275 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~---------------------------- 275 (583)
|+|+|||+|++|+-.|..+.+. +.+++++|+.+.+..-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--------------g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--------------GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--------------T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHC--------------CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 5999999999999999998774 6889999887654210
Q ss_pred ---c-----------cHHHHHHHHHHHHhCCC--EEEeCCeEEEEeC--C-----eEEEEEcCCCeeEEeecceEEEccC
Q 007975 276 ---F-----------DKRITAFAEEKFSRDGI--DVKLGSMVVKVTD--K-----EIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 276 ---~-----------~~~~~~~~~~~L~~~GV--~v~~~~~V~~v~~--~-----~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
+ ..++.++++...++.++ .|.++++|++|+. + .-.++...+|+..+..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 0 14577888888887776 5889999999963 2 2344444556655667999999999
Q ss_pred CCCchhHHHHHHHh-CcCC-CcceEeCCCCccC---CCCCEEEcCccccc
Q 007975 333 IAPHAIIKDFMKQV-GQTN-RRALATDEWLRVE---GSDSIYALGDCATV 377 (583)
Q Consensus 333 ~~~~p~~~~l~~~~-~~~~-~g~i~Vd~~l~~~---~~~~VyAiGD~a~~ 377 (583)
.-..|.+... .+ |++. +|.+.=...++.+ ...+|-++|-..+.
T Consensus 148 ~~~~P~~P~~--~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 148 HFSKPNIPEP--SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp SSSCESB-------CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred CcCCCCCChh--hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 8777765420 11 2321 4555433333322 24679999988764
No 281
>PRK07208 hypothetical protein; Provisional
Probab=97.55 E-value=6.6e-05 Score=82.05 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=37.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
+++++|+|||||++||+||+.|.+.|++|+|+|+++..++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 45689999999999999999999999999999999988775
No 282
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.55 E-value=0.00037 Score=76.18 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=67.3
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|++|+++|..|++. +.+|+++++.+++. |. ++..+.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~--------------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRA--------------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--------------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 3567999999999999999999874 57999999888653 22 3556666667888999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.+.. .+. .+.....+|.||+|+|..
T Consensus 207 Gv~~~~~~~v~~------~~~----~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 207 GIDFVTNTEIGV------DIS----ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred CCEEECCCEeCC------ccC----HHHHHhhCCEEEEccCCC
Confidence 999999988731 011 111126799999999965
No 283
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.55 E-value=0.00037 Score=73.44 Aligned_cols=96 Identities=25% Similarity=0.312 Sum_probs=65.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-----ccHHHH------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-----FDKRIT------------------ 281 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-----~~~~~~------------------ 281 (583)
.|+|||||+.|+.+|..|++. .++.+|.++++.+.+.+. ....+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence 379999999999999988753 136789999988744331 111111
Q ss_pred --------------------HHHHHH-HHhCCCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 282 --------------------AFAEEK-FSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 282 --------------------~~~~~~-L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
..+.+. +++.+..++++++|++++++++++. +|++ +.+|.||+|.|+.+.+
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~---dg~~--~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLA---PGTR--INARSVIDCRGFKPSA 140 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEEC---CCCE--EEeeEEEECCCCCCCc
Confidence 011122 2333445788999999988888773 3765 9999999999976543
No 284
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.53 E-value=0.00076 Score=76.11 Aligned_cols=35 Identities=37% Similarity=0.587 Sum_probs=31.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
...+|||||||.||++||..+++.|.+|+|||+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45799999999999999999999999999999754
No 285
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.52 E-value=0.00022 Score=77.24 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=64.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC--------cc--cHHHHHHHHHHHHhC
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN--------MF--DKRITAFAEEKFSRD 291 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~--------~~--~~~~~~~~~~~L~~~ 291 (583)
..++|+|||+||.|+.+|..|+... .+.+|+|+++.+.+.. .. ...+.....+.+++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4569999999999999999997531 2689999999987642 11 123344556667788
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+|+++.|..| +..+.+.+ -. ..+|.||+|+|..+
T Consensus 93 ~v~~~~nv~v----g~dvtl~~---L~---~~yDaVIlAtGa~~ 126 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSE---LR---DLYHVVVLAYGAES 126 (491)
T ss_pred CeEEEcCEEE----CccccHHH---Hh---hhCCEEEEecCCCC
Confidence 9999988665 22233322 21 46899999999653
No 286
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.52 E-value=6.7e-05 Score=81.21 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=34.6
Q ss_pred CeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~~~~~ 96 (583)
++|+|||||+|||+||+.|++.| ++|+|+|+++..++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 47999999999999999999877 899999999988764
No 287
>PLN02268 probable polyamine oxidase
Probab=97.50 E-value=8.1e-05 Score=80.28 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=36.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~ 98 (583)
++|+|||||++||+||+.|.+.|++|+|+|++++.++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 5899999999999999999999999999999999887643
No 288
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=9.6e-05 Score=78.32 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC-CCCCCchhhh---ccccCC-------------------------
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY-FAFTPLLPSV---TCGTVE------------------------- 108 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~-~~~~p~l~~~---~~g~~~------------------------- 108 (583)
.++|+|||||.||+.||...++.|.++.|+--+.. .++.++-|.+ ..|.+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999876532 2222222211 111000
Q ss_pred ---------------CcccchhHHHHHHhCCCcEEEEEeEEEEEecCCCE----EEEecCCCCCCCCCceEEeecCEEEE
Q 007975 109 ---------------ARSIVEPVRNIVRKKNVDICFWEAECFKIDAENKK----VYCRSSQNTNLNGKEEFCMDYDYLVI 169 (583)
Q Consensus 109 ---------------~~~i~~~~~~~~~~~~i~v~~~~~~v~~id~~~~~----v~~~~~~~~~~~~~~~~~i~yD~LVi 169 (583)
...+...++..+.... ++.++++.|+++..++.. |.+..+. .+.++.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~-NL~l~q~~v~dli~e~~~~v~GV~t~~G~----------~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQP-NLHLLQGEVEDLIVEEGQRVVGVVTADGP----------EFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCC-CceehHhhhHHHhhcCCCeEEEEEeCCCC----------eeecCEEEE
Confidence 0112223444454444 567789999998875442 3444433 899999999
Q ss_pred ccCCC
Q 007975 170 AMGAR 174 (583)
Q Consensus 170 AtG~~ 174 (583)
+||.-
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99974
No 289
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.48 E-value=0.0035 Score=70.16 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEe---CCeE---EEEEcCCCeeEEeecceEEEccCC
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v---~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
...+...+.+..++.||++++++.++++- ++.| ...+..+|+...+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 45666777777778899999999999874 2333 333334677667889999999984
No 290
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.48 E-value=0.00063 Score=72.13 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=64.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCccc--HH-----------------HHHHHH
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFD--KR-----------------ITAFAE 285 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~--~~-----------------~~~~~~ 285 (583)
+|+|||||.+|+|+|..|++. +.+|+|+++.+.++.... .. ....+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--------------G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~ 67 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--------------GVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLK 67 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHH
Confidence 799999999999999999875 689999998776543210 00 011234
Q ss_pred HHHHhCCCEEEeCCeEEEEeCCeEEEEEc-------------------CCCeeEEee-cceEEEccCCCCchhHHHHHHH
Q 007975 286 EKFSRDGIDVKLGSMVVKVTDKEIFTKVR-------------------GNGETSSMP-YGMVVWSTGIAPHAIIKDFMKQ 345 (583)
Q Consensus 286 ~~L~~~GV~v~~~~~V~~v~~~~v~~~~~-------------------~~G~~~~i~-~D~vI~a~G~~~~p~~~~l~~~ 345 (583)
+.++..|..+........+..++....+. ..++...++ .|.||+|+|..+...+.+-+..
T Consensus 68 ~ei~~lg~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~L~~ 147 (433)
T TIGR00137 68 TEMRQLSSLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSEDLKE 147 (433)
T ss_pred HHHhhcCeeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHHHHH
Confidence 66677776666555555554333221110 113333344 6799999996555443333333
No 291
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.47 E-value=0.0047 Score=69.38 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
..+|||||||.||++||..+++. |.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999876 999999999863
No 292
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.46 E-value=0.00045 Score=78.15 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=67.7
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|+.|+..|..|+.. +.+|+++++.+.+. | .++..+.+...+.+++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 373 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARA--------------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM 373 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHc--------------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHC
Confidence 3578999999999999999999875 57899999988643 2 24566666667888999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.+.. .+.+.+ . ...+|.||+|+|..
T Consensus 374 Gv~~~~~~~v~~----~~~~~~---l---~~~~DaV~latGa~ 406 (639)
T PRK12809 374 GIDFHLNCEIGR----DITFSD---L---TSEYDAVFIGVGTY 406 (639)
T ss_pred CeEEEcCCccCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999987631 122211 1 14689999999964
No 293
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.46 E-value=0.00025 Score=83.75 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=68.3
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
.++++|+||||||.|+.+|..|++. +.+|+++++.+.+. |. ++.++.+...+.+++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~--------------G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~ 493 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKY--------------GVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDI 493 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--------------CCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHC
Confidence 3578999999999999999999885 57999999887652 22 3567777788889999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.+ +..+++.+.. + ...+|.||+|+|..
T Consensus 494 Gv~~~~~~~v----g~~~~~~~l~--~--~~~yDaViIATGa~ 528 (1006)
T PRK12775 494 GVKIETNKVI----GKTFTVPQLM--N--DKGFDAVFLGVGAG 528 (1006)
T ss_pred CCEEEeCCcc----CCccCHHHHh--h--ccCCCEEEEecCCC
Confidence 9999999754 2222222111 0 14589999999963
No 294
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.46 E-value=0.00048 Score=76.94 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=30.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
..+|||||||.||++||..+++. |.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 46999999999999999999855 589999998754
No 295
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.0011 Score=73.77 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=67.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc-----------cCc----ccHHHHHHHHHHH
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI-----------LNM----FDKRITAFAEEKF 288 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i-----------l~~----~~~~~~~~~~~~L 288 (583)
..|+|||||+.|+.+|..+++. +.+|+|+++.+.- .|. ....+.+.+.+.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~--------------g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRA--------------KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--------------CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 3899999999999999999874 5789999875310 011 1245677777888
Q ss_pred HhCCCEEEeCCeEEEEeCCe--EEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 289 SRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
++.||+++ ++.|+.++.++ ..+.. .+|+ +.+|.+|+|+|..+.
T Consensus 71 ~~~gv~~~-~~~V~~i~~~~~~~~V~~-~~g~---~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 71 QDFGVKFL-QAEVLDVDFDGDIKTIKT-ARGD---YKTLAVLIATGASPR 115 (555)
T ss_pred HHcCCEEe-ccEEEEEEecCCEEEEEe-cCCE---EEEeEEEECCCCccC
Confidence 88999986 67788887432 33333 3343 889999999996543
No 296
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.00074 Score=75.25 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=32.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|||||+|.||++||..+++.|.+|+||||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 347999999999999999999999999999998743
No 297
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.43 E-value=0.0023 Score=66.84 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=62.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEe-cCCccc------------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLE-AADHIL------------------------------ 273 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~-~~~~il------------------------------ 273 (583)
.|+|||||..|+|.|..+++. +.+|.|+. ..+.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--------------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--------------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 489999999999999999987 57888883 222211
Q ss_pred ----------------C-------ccc-HHHHHHHHHHHHh-CCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecce
Q 007975 274 ----------------N-------MFD-KRITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (583)
Q Consensus 274 ----------------~-------~~~-~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~ 326 (583)
| ..| ..+.+.+.+.|++ .+++++ ..+|+++. ++.|.-..+.+|+. +.+|.
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~--~~a~~ 143 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEE--IEADA 143 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEE--EEECE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCE--EecCE
Confidence 0 011 2345666777777 588887 46898883 56666666667885 99999
Q ss_pred EEEccCC
Q 007975 327 VVWSTGI 333 (583)
Q Consensus 327 vI~a~G~ 333 (583)
||+|+|.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999996
No 298
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.43 E-value=0.00022 Score=77.15 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=25.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCC---CeEEEEcCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPS---YDVQVISPR 90 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g---~~Vtlie~~ 90 (583)
||||||||+||..+|..|++.+ ++|||||+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 6999999999999999998555 999999966
No 299
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.42 E-value=0.00026 Score=74.14 Aligned_cols=92 Identities=17% Similarity=0.323 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhC-CCEEEeCCeEEEEeC--C---eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCC
Q 007975 279 RITAFAEEKFSRD-GIDVKLGSMVVKVTD--K---EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNR 351 (583)
Q Consensus 279 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~~--~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~ 351 (583)
.+.+.+.+.|++. |++++++++|++++. + .|.+.+..+|+..++.++.|++.+|- ..+ .|+.+.|+ ..+
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG--~aL--~LLqksgi~e~~ 257 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG--GAL--PLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch--HhH--HHHHHcCChhhc
Confidence 5667777778877 999999999999974 2 25666666677778999999999983 332 36777777 222
Q ss_pred --cceEeC-CCCccCC-------CCCEEEcCcc
Q 007975 352 --RALATD-EWLRVEG-------SDSIYALGDC 374 (583)
Q Consensus 352 --g~i~Vd-~~l~~~~-------~~~VyAiGD~ 374 (583)
|..+|. .+|++.+ .--||-.-..
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 445555 4666622 2346765554
No 300
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.42 E-value=0.00078 Score=73.79 Aligned_cols=34 Identities=35% Similarity=0.363 Sum_probs=30.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+|||||+|.||+.||..+++.|. |+||||.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 3689999999999999999998887 999999854
No 301
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.40 E-value=0.00055 Score=77.52 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=66.7
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|+.|+..|..|+.. +.+|+++++.+.+. |. ++..+.+...+.+++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~--------------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRK--------------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 4567999999999999999999875 57999999887652 22 3456666667888899
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
||++++++.+. + .+.+. +.. ..+|.||+|+|...
T Consensus 257 Gv~i~~~~~v~-~---dv~~~---~~~---~~~DaVilAtGa~~ 290 (652)
T PRK12814 257 GAEFRFNTVFG-R---DITLE---ELQ---KEFDAVLLAVGAQK 290 (652)
T ss_pred CCEEEeCCccc-C---ccCHH---HHH---hhcCEEEEEcCCCC
Confidence 99999998641 1 11111 122 35899999999643
No 302
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.39 E-value=0.00054 Score=73.50 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=67.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhCC
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRDG 292 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~G 292 (583)
.+++|+|||+||.|..+|..|+.. +..||++++.+.+. | .++.++.+...+.|++.|
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~--------------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G 187 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRA--------------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG 187 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhC--------------CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence 457999999999999999999885 68999999988753 2 145678888899999999
Q ss_pred CEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
|+|++++++-. .+++..+ .-++|.|++++|.
T Consensus 188 v~~~~~~~vG~----~it~~~L------~~e~Dav~l~~G~ 218 (457)
T COG0493 188 VEFKLNVRVGR----DITLEEL------LKEYDAVFLATGA 218 (457)
T ss_pred eEEEEcceECC----cCCHHHH------HHhhCEEEEeccc
Confidence 99999988631 2222211 1335999999984
No 303
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.39 E-value=0.00098 Score=71.77 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..||||||+|.||++||..+. .|.+|+||||.+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 479999999999999999985 6999999999754
No 304
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.37 E-value=0.00014 Score=78.98 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC----CCeEEEEcCCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP----SYDVQVISPRNYFAFT 96 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~----g~~Vtlie~~~~~~~~ 96 (583)
+++|+|||||++||+||+.|.+. |++|+|+|+++..++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 47999999999999999999977 9999999999987765
No 305
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.37 E-value=0.001 Score=74.27 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+|||||||.||++||..+++.|.+|+||||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999998753
No 306
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.37 E-value=0.00071 Score=76.80 Aligned_cols=90 Identities=29% Similarity=0.324 Sum_probs=66.1
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|++|+..|..|++. +.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~--------------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARN--------------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 57899999887642 2 23455666666788899
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.|.. .+.+.. - ...+|.||+|+|..
T Consensus 391 Gv~~~~~~~v~~----~i~~~~---~---~~~~DavilAtGa~ 423 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES---L---LEDYDAVFVGVGTY 423 (654)
T ss_pred CeEEECCCEeCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999987621 111111 1 14589999999954
No 307
>PLN02576 protoporphyrinogen oxidase
Probab=97.36 E-value=0.00018 Score=79.02 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC-CCeEEEEcCCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNP-SYDVQVISPRNYFAFTP 97 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~-g~~Vtlie~~~~~~~~p 97 (583)
..++|+|||||++||+||++|.+. |++|+|+|+++..++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 456899999999999999999988 99999999999887753
No 308
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.35 E-value=0.00067 Score=79.07 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=64.5
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cc--ccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NM--FDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 291 (583)
..+++|+||||||.|+.+|..|++. +.+|+|+++.+.+. |. .+.+..+...+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~--------------G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA--------------GHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 3567999999999999999999875 67999999887542 22 2344555556778889
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
||++++++.. .+.+.. .+ ...+|.||+|+|...
T Consensus 601 GVe~~~g~~~------d~~ve~---l~--~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 601 GVEFKYGCSP------DLTVAE---LK--NQGYKYVILAIGAWK 633 (1012)
T ss_pred CcEEEEeccc------ceEhhh---hh--cccccEEEECCCCCC
Confidence 9999988431 122221 22 266899999999653
No 309
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.35 E-value=0.00081 Score=75.78 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|||||+|.||++||..+++.|.+|+||||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 357999999999999999999999999999999754
No 310
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.35 E-value=0.0064 Score=68.06 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhCCCEEEeCCeEEEEe--C----CeE---EEEEcCCCeeEEeecceEEEccCCC
Q 007975 277 DKRITAFAEEKFSRDGIDVKLGSMVVKVT--D----KEI---FTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 277 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~----~~v---~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
...+.+.+.+.+++.||+++.++.++++. + +.+ ...+..+|+...+.++.||+|+|-.
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 35667778888888999999999999973 3 333 3333345665568999999999943
No 311
>PRK06834 hypothetical protein; Provisional
Probab=97.32 E-value=0.0024 Score=69.82 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+.+.+.+++.||+++.+++|++++ ++++.+.. .+|++ +.+|.||.|.|..
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~-~~g~~--i~a~~vVgADG~~ 155 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTGVDVEL-SDGRT--LRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 34455666778899999999999986 35566654 44653 9999999999953
No 312
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.31 E-value=0.0013 Score=74.38 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+|||||||.||+.||..+++.|.+|+|||+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46999999999999999999999999999998643
No 313
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.31 E-value=0.00018 Score=78.36 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.0
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC------CCeEEEEcCCCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP------SYDVQVISPRNYFAFTP 97 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~------g~~Vtlie~~~~~~~~p 97 (583)
|++|+|||||++||+||+.|.+. +++|+|+|+++..++..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 46899999999999999999864 48999999999887753
No 314
>PRK08244 hypothetical protein; Provisional
Probab=97.30 E-value=0.0031 Score=69.22 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEc-CCCeeEEeecceEEEccCCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVR-GNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+++.|++++.++++++++ ++++++... .+|+ .++.+|.||-|.|..
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a~~vVgADG~~ 158 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTSSYVVGADGAG 158 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEeCEEEECCCCC
Confidence 345556666778899999999999985 445544321 2352 359999999999953
No 315
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0071 Score=57.25 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=81.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-------cc--------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD-------------------- 277 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-------~~-------------------- 277 (583)
.|+|||+||+|.-+|..|++. +.+|.++++.-.+... |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~--------------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKA--------------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhC--------------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 899999999999999999984 6899999987554211 11
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCeEEEE--eCC-eE---EEEEc---CCC---eeEEeecceEEEccCCC
Q 007975 278 -----------KRITAFAEEKFSRDGIDVKLGSMVVKV--TDK-EI---FTKVR---GNG---ETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 278 -----------~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~~-~v---~~~~~---~~G---~~~~i~~D~vI~a~G~~ 334 (583)
..+...+....-+.|++|...+.|.++ .++ +| ++.=+ ..+ +...++++.||-+||.-
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 111222223334567888888888876 233 33 22100 011 12258899999999963
Q ss_pred CchhHHHHHHHhC---c---CC------Cc-ceEeCCCCccCCCCCEEEcCcccc
Q 007975 335 PHAIIKDFMKQVG---Q---TN------RR-ALATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 335 ~~p~~~~l~~~~~---~---~~------~g-~i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
. +....+.++.. + .. ++ .+.|+.+.++ +|+.|++|=+++
T Consensus 178 a-~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~ 229 (262)
T COG1635 178 A-EVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVN 229 (262)
T ss_pred h-HHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHH
Confidence 3 34434444332 1 11 11 2445545554 899999998765
No 316
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0024 Score=65.01 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=68.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce-EEEEecC---------------CcccC-cccHHHHHHHHHH
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAA---------------DHILN-MFDKRITAFAEEK 287 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~---------------~~il~-~~~~~~~~~~~~~ 287 (583)
.|+|||+||.|+-.|-.+.+.. .+ +.+++.. +.+-. ...+++.+.+.++
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 8999999999999999998863 34 3333332 11111 2457888888899
Q ss_pred HHhCCCEEEeCCeEEEEeCCe--EEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 288 FSRDGIDVKLGSMVVKVTDKE--IFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 288 L~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
.+..|+++.. ..|.+++... .++.. ++|+ +.++.||+|+|....+
T Consensus 71 a~~~~~~~~~-~~v~~v~~~~~~F~v~t-~~~~---~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 71 AEKFGVEIVE-DEVEKVELEGGPFKVKT-DKGT---YEAKAVIIATGAGARK 117 (305)
T ss_pred HhhcCeEEEE-EEEEEEeecCceEEEEE-CCCe---EEEeEEEECcCCcccC
Confidence 9999999998 7788887654 44443 3454 9999999999976654
No 317
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.29 E-value=0.00075 Score=76.89 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 53 EMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 53 ~~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
++...+++|+|||||++|++||+.|.+.|++|+|+|+++..++..
T Consensus 233 ~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 233 FEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 344557899999999999999999999999999999998877653
No 318
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.29 E-value=0.0002 Score=73.67 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred CeEEEECCcHHHHHHHHhcC--------------CCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLN--------------NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKN 124 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~--------------~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~ 124 (583)
-++|||||||.|+.+|-.|+ ....+|||||..+... +.+ .+.+.....+++.+.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF------dkrl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF------DKRLVEYAENQFVRDG 287 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH------HHHHHHHHHHHhhhcc
Confidence 47999999999999998886 2457899999886422 111 2245666677888888
Q ss_pred CcEEEEEeEEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 125 VDICFWEAECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 125 i~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
++++ ....|..++.+ .+.....++ +..+++|--||-|||..|+..
T Consensus 288 I~~~-~~t~Vk~V~~~--~I~~~~~~g------~~~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 288 IDLD-TGTMVKKVTEK--TIHAKTKDG------EIEEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred ceee-cccEEEeecCc--EEEEEcCCC------ceeeecceEEEecCCCCCchh
Confidence 6664 45577788755 455444321 235899999999999987643
No 319
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.29 E-value=0.0011 Score=72.16 Aligned_cols=90 Identities=27% Similarity=0.349 Sum_probs=66.1
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC---------cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~---------~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|+.|+.+|..+++. +.+|+++++.+.+.. .++.++.....+.+++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~--------------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA--------------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 4567999999999999999999874 579999998876532 13455556666778899
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.+.. + +... .. ...+|.||+|+|..
T Consensus 207 gv~~~~~~~v~~-~---~~~~----~~--~~~~d~vvlAtGa~ 239 (471)
T PRK12810 207 GIEFRTNVEVGK-D---ITAE----EL--LAEYDAVFLGTGAY 239 (471)
T ss_pred CcEEEeCCEECC-c---CCHH----HH--HhhCCEEEEecCCC
Confidence 999999987631 0 1100 11 25799999999964
No 320
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.28 E-value=0.00021 Score=78.35 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=36.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
++|||||||++||+||..|++.|++|+|+|+++..++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 689999999999999999999999999999998887654
No 321
>PLN02463 lycopene beta cyclase
Probab=97.28 E-value=0.0027 Score=68.46 Aligned_cols=94 Identities=19% Similarity=0.382 Sum_probs=65.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-Cc---------------------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-NM--------------------------- 275 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-~~--------------------------- 275 (583)
..|+|||||++|.-+|..+++. +.+|.++++.+... |.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~--------------Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v 94 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEA--------------GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVV 94 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHC--------------CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEE
Confidence 3899999999999999998763 56777777654211 00
Q ss_pred -----------------ccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 276 -----------------FDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 276 -----------------~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
....+.+.+.+.+.+.||+++ .++|++|+. +.+.+.. .+|++ +.+|.||.|+|..+
T Consensus 95 ~~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~-~dG~~--i~A~lVI~AdG~~s 169 (447)
T PLN02463 95 YIDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVC-DDGVK--IQASLVLDATGFSR 169 (447)
T ss_pred EEeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEE-CCCCE--EEcCEEEECcCCCc
Confidence 012334556666777899997 468888863 3444443 45754 99999999999654
No 322
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.25 E-value=0.0017 Score=71.06 Aligned_cols=78 Identities=24% Similarity=0.334 Sum_probs=59.2
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeE
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V 301 (583)
++++|+|+|+|.+|+++|..|... +.+|+++++.+. .....+.+.|++.||+++++..+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~--------------G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL--------------GARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCc
Confidence 345999999999999998888764 679999987652 23345567788999999988654
Q ss_pred EEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 302 ~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
. . ...+|+||.++|+.+..
T Consensus 74 ~----------~-------~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 74 T----------L-------PEDTDLVVTSPGWRPDA 92 (480)
T ss_pred c----------c-------cCCCCEEEECCCcCCCC
Confidence 2 0 15689999999976543
No 323
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.24 E-value=0.0016 Score=72.32 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|||||+|.||++||..+ +.|.+|+||||...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 347999999999999999999 88999999999753
No 324
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.24 E-value=0.00094 Score=71.58 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=59.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-------cc---HHHHHHHHHHHHhC
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD---KRITAFAEEKFSRD 291 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-------~~---~~~~~~~~~~L~~~ 291 (583)
+.++|+|||+||+|+++|..+... .+.+|+++++.+.+... .. ..+.+.+.+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 456999999999999999987643 25799999999886421 11 23444455556667
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
++++..+..|-. .+++.. . .-.+|.||+|+|..
T Consensus 105 ~v~f~gnv~VG~----Dvt~ee-----L-~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEE-----L-RNHYNCVIFCCGAS 137 (506)
T ss_pred CeEEEeeeEecC----ccCHHH-----H-HhcCCEEEEEcCCC
Confidence 888886544311 111111 1 13589999999954
No 325
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.23 E-value=0.00024 Score=74.85 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 47999999999999999999999999999998764
No 326
>PLN02529 lysine-specific histone demethylase 1
Probab=97.23 E-value=0.00035 Score=79.09 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=43.9
Q ss_pred ecccCCCCCcCCCCCCCCCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 38 SEANASSDAYSVAPPEMGIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
|..+|.... ..++....++|+|||||++|++||+.|++.|++|+|+|+++..++..
T Consensus 144 c~vnp~~~~----~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 144 FGVSPSFAS----PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred eeecccccC----CCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 455555432 23334567899999999999999999999999999999998877653
No 327
>PLN02568 polyamine oxidase
Probab=97.20 E-value=0.00033 Score=77.20 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=36.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCC-----CeEEEEcCCCCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPS-----YDVQVISPRNYFAFTP 97 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g-----~~Vtlie~~~~~~~~p 97 (583)
++.++|+|||||++||+||..|.+.| ++|+|+|+++..++..
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 34579999999999999999999666 9999999999887753
No 328
>PRK06184 hypothetical protein; Provisional
Probab=97.19 E-value=0.0047 Score=67.98 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEE--cCCCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKV--RGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~--~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+.+.+.|++++.++++++++. +++++.. ..+++ ++.+|.||-|.|.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~--~i~a~~vVgADG~ 166 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEE--TVRARYLVGADGG 166 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE--EEEeCEEEECCCC
Confidence 445667777888999999999999963 4454432 12333 4999999999994
No 329
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.19 E-value=0.00033 Score=73.44 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=34.7
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
.+|+|||||++|+++|..|++.|.+|+|+|+++..++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 58999999999999999999889999999998876664
No 330
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.15 E-value=0.0045 Score=65.81 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHhC-CCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 281 TAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 281 ~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+. +|+++.+++|++++. +++.+.. .+|++ +.+|.||.|.|..
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vV~AdG~~ 165 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFD-QQGNR--WTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEE-cCCCE--EecCEEEECCCcC
Confidence 34445555555 499999999999963 4566554 44654 8999999999953
No 331
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.14 E-value=0.00033 Score=76.00 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=35.0
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
+|+|||||++||+||..|.+.|++|+|+|+++..++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999877753
No 332
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.14 E-value=0.0037 Score=74.23 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=68.2
Q ss_pred cceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcc-----------cHHHHHHHHHHHHhC
Q 007975 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-----------DKRITAFAEEKFSRD 291 (583)
Q Consensus 223 ~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~-----------~~~~~~~~~~~L~~~ 291 (583)
...|+|||||+.|+..|..+++. +.+|+|++..+.+...+ ..++.....+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~--------------G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA--------------GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--------------CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 46899999999999999999874 67999999876653211 123334455666666
Q ss_pred -CCEEEeCCeEEEEeCCe-EEEEE-cC-------CC----eeEEeecceEEEccCCCCc
Q 007975 292 -GIDVKLGSMVVKVTDKE-IFTKV-RG-------NG----ETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 292 -GV~v~~~~~V~~v~~~~-v~~~~-~~-------~G----~~~~i~~D~vI~a~G~~~~ 336 (583)
+|++++++.|..+..+. +.... .. ++ ...++.+|.||+|+|..+.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 59999999999886542 21111 00 01 1124889999999996544
No 333
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.13 E-value=0.0034 Score=66.95 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.+.+.+.+++.||+++.++++++++. +++++.. .+|++ +.+|.||.|.|. ...+..
T Consensus 115 ~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vVgAdG~--~S~vR~ 172 (405)
T PRK05714 115 QDALLERLHDSDIGLLANARLEQMRRSGDDWLLTL-ADGRQ--LRAPLVVAADGA--NSAVRR 172 (405)
T ss_pred HHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC--CchhHH
Confidence 34455666778999999999999853 4565543 45654 999999999995 444434
No 334
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.10 E-value=0.0047 Score=65.62 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEeC---CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVTD---KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.+.+.+...+.|+++++++++++++. +.+.+....+|++.++.+|.||-|-|. +..+..
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~--~S~vR~ 167 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF--HGVSRA 167 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC--CCchhh
Confidence 34445555678999999999998854 334333323576556999999999994 444444
No 335
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.10 E-value=0.0063 Score=67.57 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEc-CCCeeEEeecceEEEccCCCCchhHHH
Q 007975 280 ITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVR-GNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 280 ~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+.+.+.+.+.+. ||+++.+++|++++ ++++++... .+|+..++.+|.||-|.|. +..+..
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~--~S~vR~ 178 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGA--NSFVRR 178 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCC--chhHHH
Confidence 445555666664 99999999999996 355655432 2565456999999999994 444433
No 336
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.09 E-value=0.0019 Score=65.66 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
....+|+|||||.+|-+.|..|++.|.+|+||||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 44578999999999999999999999999999987
No 337
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.09 E-value=0.00048 Score=77.00 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
.++.+|+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456799999999999999999999999999999875
No 338
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.09 E-value=0.0068 Score=64.38 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+.+.+.+.+++.||+++.+++|++++. +++++.. .+|++ +.+|.||.|.|..+
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRL-DDGRR--LEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEE-CCCCE--EEeCEEEEecCCCc
Confidence 4455666777888999999999999853 4565543 44654 89999999999543
No 339
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.07 E-value=0.0057 Score=65.16 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
..+.+.+.+.+.+.||+++.+++|++++ ++.+.+.. .+|+. +.+|.||.|.|..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTL-SDGSV--LEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEE-CCCCE--EEeCEEEEcCCCC
Confidence 3456677777888899999999999985 34555553 44654 8999999999953
No 340
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.00066 Score=74.26 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=59.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEEEE
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAECFK 136 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v~~ 136 (583)
..++|+|||+|.+|+++|..|...|++|+++|+++. .....+.+.+++.|+.+ ..+.-..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~------------------~~~~~~~~~l~~~gv~~--~~~~~~~ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD------------------ERHRALAAILEALGATV--RLGPGPT 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------------------hhhHHHHHHHHHcCCEE--EECCCcc
Confidence 356899999999999999999999999999997742 11223445566667443 2221000
Q ss_pred EecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCCCCCccc
Q 007975 137 IDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFNTPGVEE 185 (583)
Q Consensus 137 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ipG~~~ 185 (583)
. ...+|.+|+++|..|+.+-+....+
T Consensus 75 ---------~--------------~~~~D~Vv~s~Gi~~~~~~~~~a~~ 100 (480)
T PRK01438 75 ---------L--------------PEDTDLVVTSPGWRPDAPLLAAAAD 100 (480)
T ss_pred ---------c--------------cCCCCEEEECCCcCCCCHHHHHHHH
Confidence 0 3468999999999887765444433
No 341
>PLN02661 Putative thiazole synthesis
Probab=97.07 E-value=0.019 Score=59.29 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=78.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC---------------------------ccc
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------------MFD 277 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~---------------------------~~~ 277 (583)
.|+|||+|+.|+-+|..+++. ++.+|+++++...+.. .++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 899999999999999999852 2568888887654311 000
Q ss_pred -----------HHHHHHHH-HHHHhCCCEEEeCCeEEEEe--CCe---EEEE------EcCCC---eeEEeecceEEEcc
Q 007975 278 -----------KRITAFAE-EKFSRDGIDVKLGSMVVKVT--DKE---IFTK------VRGNG---ETSSMPYGMVVWST 331 (583)
Q Consensus 278 -----------~~~~~~~~-~~L~~~GV~v~~~~~V~~v~--~~~---v~~~------~~~~G---~~~~i~~D~vI~a~ 331 (583)
..+...+. +.+++.||+++.++.+.++- ++. +.+. +..++ +...+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 01111223 33345789999999988874 333 2221 10111 22358999999999
Q ss_pred CCCCchhHHHHHHH---hCcCC-----------Cc-ceEeCCCCccCCCCCEEEcCccccc
Q 007975 332 GIAPHAIIKDFMKQ---VGQTN-----------RR-ALATDEWLRVEGSDSIYALGDCATV 377 (583)
Q Consensus 332 G~~~~p~~~~l~~~---~~~~~-----------~g-~i~Vd~~l~~~~~~~VyAiGD~a~~ 377 (583)
|...+ ........ +++.. ++ ..+|+.+-++ +|++|++|=.++-
T Consensus 241 Gh~g~-~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~ 298 (357)
T PLN02661 241 GHDGP-FGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAE 298 (357)
T ss_pred CCCCc-chhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhh
Confidence 95432 22222221 22200 11 1223333343 7999999987653
No 342
>PLN02697 lycopene epsilon cyclase
Probab=97.06 E-value=0.0054 Score=67.37 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=63.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC-----------------------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN----------------------------- 274 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~----------------------------- 274 (583)
..|+|||||+.|+.+|..+++. +.+|.++++...+.+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~--------------Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKL--------------GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhC--------------CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 4899999999999999888764 345555554211100
Q ss_pred -------------cc-cHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 275 -------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 275 -------------~~-~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+ ...+.+.+.+.+.+.||++ .+++|++++ ++.+.+....+|.+ +.++.||.|.|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~--i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRV--IPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcE--EECCEEEECCCcCh
Confidence 01 1234456666677789998 677899886 34443322234654 99999999999655
No 343
>PRK07190 hypothetical protein; Provisional
Probab=97.06 E-value=0.0078 Score=65.84 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+.+++.||+++.+++|++++ ++++++.. .+|+ ++.++.||.|.|.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~--~v~a~~vVgADG~ 163 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGE--RIQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCc--EEEeCEEEECCCC
Confidence 34455667778899999999999986 45555543 3465 4999999999994
No 344
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.05 E-value=0.0074 Score=64.55 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhC-CCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+.+.+. ||+++.++++++++. +.+.+....+++..++.+|+||.|.|.
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA 179 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC
Confidence 344444555554 799999999999853 445444322233235999999999995
No 345
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.01 E-value=0.0061 Score=64.53 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCC-CEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 279 RITAFAEEKFSRDG-IDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 279 ~~~~~~~~~L~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+++.| |+++ ++++++++ ++.+.+.. .+|++ +.+|.||.|.|..
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~adG~~ 166 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTL-ADGQV--LRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEE-CCCCE--EEeeEEEEeCCCC
Confidence 34555666677777 9999 88999985 35565553 34653 9999999999953
No 346
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.01 E-value=0.00056 Score=75.07 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
..+.+.+.+.++++|++|+++++|++|. ++.+....+.+|++ +.+|.||+++|
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~--~~ad~vV~a~~ 283 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEK--IYAKRIVSNAT 283 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCE--EEcCEEEECCC
Confidence 4677888899999999999999999985 34443333345764 89999999988
No 347
>PTZ00367 squalene epoxidase; Provisional
Probab=96.99 E-value=0.00068 Score=75.06 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
..++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 348
>PRK09897 hypothetical protein; Provisional
Probab=96.98 E-value=0.0097 Score=65.38 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=32.4
Q ss_pred HHhCC--CEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 288 FSRDG--IDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 288 L~~~G--V~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+.+.| |+++.+++|++++. +++.+....+|.. +.+|.||+|+|...
T Consensus 117 a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~--i~aD~VVLAtGh~~ 166 (534)
T PRK09897 117 ARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS--ETFDLAVIATGHVW 166 (534)
T ss_pred HHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE--EEcCEEEECCCCCC
Confidence 34555 78888999999963 4566654233443 89999999999643
No 349
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.98 E-value=0.0037 Score=69.81 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
..+|||||||.||+.||..+++. |.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 36899999999999999999854 689999998754
No 350
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.92 E-value=0.011 Score=64.19 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=60.8
Q ss_pred hHhhhcCCCC-CCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecc
Q 007975 249 DLFKLYPKVK-DSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYG 325 (583)
Q Consensus 249 ~~~~~~p~~~-~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D 325 (583)
+..+.||.+. ++..-.|..+.+..+. +..+.+.+....++.|+.|+.++.|+++. .++..-+.+.-|. |++.
T Consensus 159 e~~~~~pLLn~d~v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~---iet~ 233 (856)
T KOG2844|consen 159 ETQELFPLLNVDDVYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS---IETE 233 (856)
T ss_pred HHHHhCcccchhHheeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc---eecc
Confidence 4556677765 5677788888876653 24566777788889999999999999985 2322222233476 9999
Q ss_pred eEEEccCCCCch
Q 007975 326 MVVWSTGIAPHA 337 (583)
Q Consensus 326 ~vI~a~G~~~~p 337 (583)
.+|-|+|++++.
T Consensus 234 ~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 234 CVVNAAGVWARE 245 (856)
T ss_pred eEEechhHHHHH
Confidence 999999987753
No 351
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.91 E-value=0.012 Score=65.50 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhC-CCEEEeCCeEEEEeC--CeEEEEEc-CCCeeEEeecceEEEccCCCCchhHHH
Q 007975 280 ITAFAEEKFSRD-GIDVKLGSMVVKVTD--KEIFTKVR-GNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 280 ~~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~v~~~~~-~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+.+.+.+.+++. +|+++++++|++++. +++++... .+|+ .++.+|.||.|.|. +..+..
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~ad~vVgADG~--~S~vR~ 189 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-YTLEADWVIACDGA--RSPLRE 189 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-EEEEeCEEEECCCC--CcHHHH
Confidence 344555666664 799999999999964 45544321 2343 25899999999994 444433
No 352
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.88 E-value=0.00093 Score=73.48 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeE--EEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEI--FTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
..+...+.+..+++|++++.+++|+++.. +.+ ++.+..+|+..++.++.||.|+|.....
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 45656666778889999999999999853 333 3333234654569999999999954443
No 353
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.88 E-value=0.00097 Score=73.28 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=34.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
..+.+|+|||||+.|+++|+.|++.|++|+|||+++...
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 345899999999999999999999999999999996543
No 354
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.87 E-value=0.00088 Score=69.05 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
+++|||||||.+|+++|..|.+.|++|+|+|++...-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 5799999999999999999999999999999876543
No 355
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.85 E-value=0.0015 Score=73.58 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC-CCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~-~g~~Vtlie~~~~ 92 (583)
.+.+|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46799999999999999999999 5999999998854
No 356
>PRK07588 hypothetical protein; Provisional
Probab=96.85 E-value=0.013 Score=62.24 Aligned_cols=40 Identities=8% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 291 DGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.|++++++++|++++. +++++.. .+|+. +.+|.||-|.|.
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~d~vIgADG~ 156 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTF-ERGTP--RDFDLVIGADGL 156 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEE-CCCCE--EEeCEEEECCCC
Confidence 4799999999999963 5566553 45765 889999999995
No 357
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.84 E-value=0.0038 Score=65.36 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=56.4
Q ss_pred HHHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcc-------cHH------HHHH
Q 007975 217 DEERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMF-------DKR------ITAF 283 (583)
Q Consensus 217 ~~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~-------~~~------~~~~ 283 (583)
+....-.++++|||||.+|++.|.+|++. |.+|+||+..+.+...+ +.. +...
T Consensus 118 ~~~~~v~~svLVIGGGvAGitAAl~La~~--------------G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~ 183 (622)
T COG1148 118 EIKVEVSKSVLVIGGGVAGITAALELADM--------------GFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPK 183 (622)
T ss_pred hHHHhhccceEEEcCcHHHHHHHHHHHHc--------------CCeEEEEecCCcccccHHhhhccCCCcccchhhccch
Confidence 33344567999999999999999999997 68999999998775321 111 2233
Q ss_pred HHHHHHhCCCEEEeCCeEEEEeC
Q 007975 284 AEEKFSRDGIDVKLGSMVVKVTD 306 (583)
Q Consensus 284 ~~~~L~~~GV~v~~~~~V~~v~~ 306 (583)
+.+.-...+|++++.++|++|++
T Consensus 184 m~~v~~hp~i~l~TyaeV~ev~G 206 (622)
T COG1148 184 MVEVSNHPNIELITYAEVEEVSG 206 (622)
T ss_pred hhhhccCCceeeeeeeeeeeecc
Confidence 34444556899999999999764
No 358
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.84 E-value=0.0026 Score=62.36 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCC------CeEEEEcCC
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPS------YDVQVISPR 90 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g------~~Vtlie~~ 90 (583)
....++|+|||||..|+.+|++|.+.+ ++|||||..
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 344589999999999999999998544 789999965
No 359
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.84 E-value=0.0088 Score=66.11 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=60.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCC-ccc-----C------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD-HIL-----N------------------------ 274 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~-~il-----~------------------------ 274 (583)
.|+|||||+.|++.|..+++. +.+|.|+++.. .+. |
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~--------------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARM--------------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHc--------------CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 799999999999999999885 56788887762 110 0
Q ss_pred ------------------------cccH-HHHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecce
Q 007975 275 ------------------------MFDK-RITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGM 326 (583)
Q Consensus 275 ------------------------~~~~-~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~ 326 (583)
.++. .+...+.+.+++. |++++ ...|+++. ++.+....+.+|.. +.|+.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~--I~Ak~ 148 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLE--FRAKA 148 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCE--EECCE
Confidence 0010 1223444555544 88886 45677763 45554333345764 99999
Q ss_pred EEEccCC
Q 007975 327 VVWSTGI 333 (583)
Q Consensus 327 vI~a~G~ 333 (583)
||.|+|.
T Consensus 149 VIlATGT 155 (618)
T PRK05192 149 VVLTTGT 155 (618)
T ss_pred EEEeeCc
Confidence 9999994
No 360
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.84 E-value=0.014 Score=61.99 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=69.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCC-cccCc----------------c-----------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD-HILNM----------------F----------- 276 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~-~il~~----------------~----------- 276 (583)
+|+|||||++|.-+|..|++. +.+|+|+|+.+ .+.+. +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~--------------G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARA--------------GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 899999999999999999885 56777777751 11100 0
Q ss_pred ---------------------------------cHHHHHHHHHHHHhCC-CEEEeCCeEEEEeC--CeEEEEEcCCCeeE
Q 007975 277 ---------------------------------DKRITAFAEEKFSRDG-IDVKLGSMVVKVTD--KEIFTKVRGNGETS 320 (583)
Q Consensus 277 ---------------------------------~~~~~~~~~~~L~~~G-V~v~~~~~V~~v~~--~~v~~~~~~~G~~~ 320 (583)
...+.+.+.+.+.+.+ |+++.+++|+.++. +.+++....+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~-- 147 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE-- 147 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc--
Confidence 0223455566666665 99999999999974 345543321677
Q ss_pred EeecceEEEccCCCCchhHHHH
Q 007975 321 SMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 321 ~i~~D~vI~a~G~~~~p~~~~l 342 (583)
++.||+||-|-| .+..+...
T Consensus 148 ~~~a~llVgADG--~~S~vR~~ 167 (387)
T COG0654 148 TLDADLLVGADG--ANSAVRRA 167 (387)
T ss_pred EEecCEEEECCC--CchHHHHh
Confidence 499999999999 45555443
No 361
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.83 E-value=0.018 Score=61.30 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=66.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc------------------Ccc----------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------------NMF---------- 276 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il------------------~~~---------- 276 (583)
.|+|||+||+|.-+|..+++. +.+|.++|+.+.+. +.+
T Consensus 5 DVvIVGaGPAGs~aA~~la~~--------------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKA--------------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHc--------------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 899999999999999999886 35566665543211 000
Q ss_pred -----------------------cHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEcc
Q 007975 277 -----------------------DKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWST 331 (583)
Q Consensus 277 -----------------------~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~ 331 (583)
...+-+++.+..++.|++++.+++++.+. +++++.....++ .++.++.||.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~a~~vI~Ad 148 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--DEVRAKVVIDAD 148 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--EEEEcCEEEECC
Confidence 12344566777888999999999999986 445544433323 259999999999
Q ss_pred CC
Q 007975 332 GI 333 (583)
Q Consensus 332 G~ 333 (583)
|.
T Consensus 149 G~ 150 (396)
T COG0644 149 GV 150 (396)
T ss_pred Cc
Confidence 94
No 362
>PLN02676 polyamine oxidase
Probab=96.83 E-value=0.0011 Score=72.46 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=37.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCC-eEEEEcCCCCCCCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSY-DVQVISPRNYFAFTPL 98 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~-~Vtlie~~~~~~~~p~ 98 (583)
..++|+|||||++||+||..|++.|. +|+|+|+++..++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 35799999999999999999999998 6999999998877543
No 363
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.82 E-value=0.00096 Score=72.68 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEE--cCCCeeEEeecceEEEccCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKV--RGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~--~~~G~~~~i~~D~vI~a~G~ 333 (583)
..+...+.+.+++.||+++++++|+++. ++.|+... ..+|+...+.++.||+|+|-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 4667777888889999999999999985 34443221 13454446899999999983
No 364
>PRK07121 hypothetical protein; Validated
Probab=96.82 E-value=0.0015 Score=71.71 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
...+|||||+|.||++||..+++.|.+|+||||....+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 4679999999999999999999999999999998875544
No 365
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0052 Score=69.86 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=69.2
Q ss_pred HHHhccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHH
Q 007975 218 EERKRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKF 288 (583)
Q Consensus 218 ~~~~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L 288 (583)
+.-+.+++|+|||.||.|.-+|..|.+. +..|++.+|.+++. | .+|..+.+.=.+.|
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~--------------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll 1845 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKA--------------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLL 1845 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhc--------------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHH
Confidence 3456899999999999999999999876 57999999999863 2 24566667777889
Q ss_pred HhCCCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 289 SRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.||++++|+.|-. .+.+. +-. -+.|.||+|+|..
T Consensus 1846 ~~egi~f~tn~eigk----~vs~d----~l~--~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1846 EQEGIRFVTNTEIGK----HVSLD----ELK--KENDAIVLATGST 1881 (2142)
T ss_pred HhhCceEEeeccccc----cccHH----HHh--hccCeEEEEeCCC
Confidence 999999999987621 12111 111 3467888888854
No 366
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.81 E-value=0.032 Score=53.09 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=73.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCc-------cc-------------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNM-------FD------------------- 277 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~-------~~------------------- 277 (583)
..|+|||+||+|+-+|..|++. +.+|.++|+...+... |+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~--------------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y 83 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA--------------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPY 83 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH--------------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---
T ss_pred CCEEEECCChhHHHHHHHHHHC--------------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCcee
Confidence 3899999999999999999886 5789999876543211 10
Q ss_pred ------------HHHHHHHHHHHHhCCCEEEeCCeEEEE--eC-CeEE---EEEc---CCC---eeEEeecceEEEccCC
Q 007975 278 ------------KRITAFAEEKFSRDGIDVKLGSMVVKV--TD-KEIF---TKVR---GNG---ETSSMPYGMVVWSTGI 333 (583)
Q Consensus 278 ------------~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~-~~v~---~~~~---~~G---~~~~i~~D~vI~a~G~ 333 (583)
.++...+....-+.|++++..+.|.++ .+ +.|. +.-+ ..| +...+.+..||=|||.
T Consensus 84 ~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 84 EEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred EEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 112222233334489999999998887 34 3432 2210 111 1235999999999996
Q ss_pred CCchhHHHHHHHhCc-C------CCcc--------eEeCCCCccCCCCCEEEcCcccc
Q 007975 334 APHAIIKDFMKQVGQ-T------NRRA--------LATDEWLRVEGSDSIYALGDCAT 376 (583)
Q Consensus 334 ~~~p~~~~l~~~~~~-~------~~g~--------i~Vd~~l~~~~~~~VyAiGD~a~ 376 (583)
-. +....+.++..+ . ..+. ..|+.+-++ +|++|++|=+++
T Consensus 164 da-~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV--~PGL~v~GMa~~ 218 (230)
T PF01946_consen 164 DA-EVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREV--YPGLYVAGMAAN 218 (230)
T ss_dssp SS-SSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEE--ETTEEE-THHHH
T ss_pred ch-HHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccc--cCCEEEechhhH
Confidence 43 333233333221 1 1111 122233333 799999997764
No 367
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.81 E-value=0.015 Score=61.46 Aligned_cols=53 Identities=8% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 279 RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 279 ~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+.+ .|++++.+++|++++ ++++++.. .+|++ +.+|.||.|.|..
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vV~AdG~~ 161 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTL-DNGQQ--LRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCCC
Confidence 345555666666 499999999999985 45566554 44654 9999999999943
No 368
>PRK06753 hypothetical protein; Provisional
Probab=96.79 E-value=0.011 Score=62.37 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 292 GIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 292 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+++++++++|++++. +++++.. .+|++ +.+|.||-|-| ....+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~~~vigadG--~~S~vR~ 156 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHF-ADGES--EAFDLCIGADG--IHSKVRQ 156 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEE-CCCCE--EecCEEEECCC--cchHHHH
Confidence 467899999999953 4565553 45764 89999999999 4544444
No 369
>PRK13984 putative oxidoreductase; Provisional
Probab=96.78 E-value=0.0029 Score=71.27 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=66.1
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------C--cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------N--MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 291 (583)
.++++|+|||+|+.|+.+|..|.+. +.+|+++++.+.+. | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~--------------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM--------------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999875 57999999887542 1 13445555556788999
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
||++++++.|.. .+.+.. . ...+|.||+|+|..
T Consensus 347 gv~~~~~~~v~~----~~~~~~---~---~~~yD~vilAtGa~ 379 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE---L---REKHDAVFLSTGFT 379 (604)
T ss_pred CcEEECCCEeCC----cCCHHH---H---HhcCCEEEEEcCcC
Confidence 999999987732 111111 1 25799999999964
No 370
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.76 E-value=0.0012 Score=73.75 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
.+.+|||||+|.||++||..+++.|.+|+||||....
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 4569999999999999999999999999999987653
No 371
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.76 E-value=0.01 Score=62.94 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 279 RITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 279 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+.+.+.+.+++. ||+++.+++|++++ ++.+.+.. .+|++ +.+|.||.|.|...
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTL-ADGEE--IQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEE-CCCCE--EEeCEEEEeCCCCc
Confidence 3445556666666 99999999999985 34455543 34654 99999999999543
No 372
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.75 E-value=0.0037 Score=69.78 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=64.3
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC---------cccHHHHHHHHHHHHhC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------MFDKRITAFAEEKFSRD 291 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~---------~~~~~~~~~~~~~L~~~ 291 (583)
..+++|+|||+|++|+.+|..+.+. +.+|+++++.+.+.. .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~--------------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM--------------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--------------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 5678999999999999999998775 578999998776532 23445555556678889
Q ss_pred CCEEEeCCeE-EEEeCCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMV-VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V-~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
|++++.++.+ .+++.+. . ...+|.||+|+|..
T Consensus 201 Gv~~~~~~~~~~~~~~~~---------~--~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ---------L--EGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEEEeCCEECCcCCHHH---------H--HhhCCEEEEeeCCC
Confidence 9999998765 3322110 0 13479999999964
No 373
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.72 E-value=0.0012 Score=67.62 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcC------CCCCeEEEEcCCCCCCCCCc
Q 007975 54 MGIKKKKVVVLGTGWAGTSFLKNLN------NPSYDVQVISPRNYFAFTPL 98 (583)
Q Consensus 54 ~~~~~~~VVIIGgG~aGl~aA~~L~------~~g~~Vtlie~~~~~~~~p~ 98 (583)
......+|||||||||||+||.+|+ ...++|.|+|+....+...+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 3445689999999999999998886 45688999999987666543
No 374
>PRK05868 hypothetical protein; Validated
Probab=96.71 E-value=0.018 Score=60.71 Aligned_cols=48 Identities=6% Similarity=0.287 Sum_probs=35.1
Q ss_pred hCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHH
Q 007975 290 RDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 290 ~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 342 (583)
..|++++++++|++++ ++.+++.. .+|++ +.+|+||-|-|. +..+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~-~dg~~--~~adlvIgADG~--~S~vR~~ 165 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTF-ERAAA--REFDLVIGADGL--HSNVRRL 165 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEE-CCCCe--EEeCEEEECCCC--CchHHHH
Confidence 3589999999999986 34566553 45764 899999999994 4444443
No 375
>PRK11445 putative oxidoreductase; Provisional
Probab=96.70 E-value=0.03 Score=58.58 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=33.6
Q ss_pred HhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 289 SRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 289 ~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.||+++.++.+++++ ++++.+....+|+..++.+|.||.|.|..
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 35689999999999985 35555543234654458999999999943
No 376
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.67 E-value=0.013 Score=62.57 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
..+.+.+.+.+++.||+++++++|++++. +.+.+.. +++. +.+|.||+|+|...
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~--~~~~--i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET--SGGE--YEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE--CCcE--EEcCEEEECCCCcc
Confidence 44556667778889999999999999864 3344433 2443 89999999999644
No 377
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.014 Score=63.01 Aligned_cols=135 Identities=19% Similarity=0.344 Sum_probs=82.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCce-EEEEecCCccc-----------------------------
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVK-ITLLEAADHIL----------------------------- 273 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~-Vtlv~~~~~il----------------------------- 273 (583)
..|+|||||++|+-+|..|.+.. .. +.++|+.+++.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999998874 33 77777664321
Q ss_pred ----CcccHHHHHHHHHHHHhCCCE--EEeCCeEEEE--eCC-eEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHH
Q 007975 274 ----NMFDKRITAFAEEKFSRDGID--VKLGSMVVKV--TDK-EIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMK 344 (583)
Q Consensus 274 ----~~~~~~~~~~~~~~L~~~GV~--v~~~~~V~~v--~~~-~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~ 344 (583)
+.+ ..+.+++...+++.++. +..++.|..+ +.+ .......++|...++.+|.||+|+|.-..|.+..+
T Consensus 75 ~~~~~~~-~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~-- 151 (443)
T COG2072 75 DEAFAPF-AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF-- 151 (443)
T ss_pred cccCCCc-ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--
Confidence 111 22678888888887654 3444555544 332 23222223344322779999999998777766554
Q ss_pred HhCcCC-CcceEeCCC----CccCCCCCEEEcCccccc
Q 007975 345 QVGQTN-RRALATDEW----LRVEGSDSIYALGDCATV 377 (583)
Q Consensus 345 ~~~~~~-~g~i~Vd~~----l~~~~~~~VyAiGD~a~~ 377 (583)
.|++. .|.+.=..+ ... .-.+|-+||=-++.
T Consensus 152 -~G~~~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaSA 187 (443)
T COG2072 152 -AGLDEFKGRILHSADWPNPEDL-RGKRVLVIGAGASA 187 (443)
T ss_pred -CCccCCCceEEchhcCCCcccc-CCCeEEEECCCccH
Confidence 23322 343321111 111 23678999887764
No 378
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.65 E-value=0.014 Score=62.06 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEe----CC-----eEEEEEcCCCeeEEee---cceEEEccCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVT----DK-----EIFTKVRGNGETSSMP---YGMVVWSTGI 333 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~----~~-----~v~~~~~~~G~~~~i~---~D~vI~a~G~ 333 (583)
+.+..-+.+.|+++||++.++++|+.++ ++ .+.+. .+|+..+|+ -|+|+++.|.
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCc
Confidence 4667778899999999999999999985 12 12333 345544453 6999999983
No 379
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.64 E-value=0.015 Score=61.25 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCC-CEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 279 RITAFAEEKFSRDG-IDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 279 ~~~~~~~~~L~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+.+.| ++++.+++|++++ ++++.+.. .+|+. +.+|.||.|.|..
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTL-DDGQQ--LRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEE-CCCCE--EEeeEEEEeCCCC
Confidence 34455666677777 9999999999986 35565543 45764 9999999999953
No 380
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.64 E-value=0.0016 Score=68.12 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=34.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNYFAFT 96 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~~~~~~ 96 (583)
...+|||||||.|||+||.+|-..| .+++|+|..+..++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 3469999999999999999998555 579999999887765
No 381
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.63 E-value=0.019 Score=60.86 Aligned_cols=93 Identities=19% Similarity=0.339 Sum_probs=61.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC------------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN------------------------------ 274 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~------------------------------ 274 (583)
.|+|||||+.|.-+|..+++. +.+|+|+++.+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~--------------g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--------------GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 389999999999999888753 456666665432210
Q ss_pred --------------cc-cHHHHHHHHHHHHhCCCEEEeCCeEEEEeCC---eEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 275 --------------MF-DKRITAFAEEKFSRDGIDVKLGSMVVKVTDK---EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 275 --------------~~-~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.. ...+.+.+.+.+.+.|++++ ..+|+.++.+ .+.+.. .+|++ +.++.||.|+|..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~-~~g~~--~~a~~VI~A~G~~s 141 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYC-AGGQR--IQARLVIDARGFGP 141 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEe-CCCCE--EEeCEEEECCCCch
Confidence 00 12344566666777899886 5578887532 333332 34654 99999999999643
No 382
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.59 E-value=0.03 Score=59.67 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHh-CCCEEEeCCeEEEEeC--CeEEEE--EcCCCeeEEeecceEEEccCCCCchhHHHH
Q 007975 279 RITAFAEEKFSR-DGIDVKLGSMVVKVTD--KEIFTK--VRGNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 279 ~~~~~~~~~L~~-~GV~v~~~~~V~~v~~--~~v~~~--~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 342 (583)
.+.+.+.+.+.+ .||+++++++|++++. +++++. ...+++ ++.+|+||-|-|. +..++..
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~--~~~adlvIgADG~--~S~vR~~ 172 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVE--TVSAAYLIACDGV--WSMLRAK 172 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCc--EEecCEEEECCCc--cHhHHhh
Confidence 344455555554 4899999999999964 445443 222333 4899999999994 4444443
No 383
>PRK09126 hypothetical protein; Provisional
Probab=96.59 E-value=0.025 Score=59.97 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHHHH-hCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 282 AFAEEKFS-RDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 282 ~~~~~~L~-~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+. ..|++++.+++|++++. +.+.+.. .+|++ +.+|.||.|.|.
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTL-ANGRR--LTARLLVAADSR 165 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEE-cCCCE--EEeCEEEEeCCC
Confidence 33344443 46999999999999863 4455443 44654 999999999995
No 384
>PRK08013 oxidoreductase; Provisional
Probab=96.57 E-value=0.02 Score=61.03 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 280 ITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 280 ~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+.+.+.+.+.+. ||+++.+++|++++ ++.+++.. .+|++ +.+|.||-|-|. +..+..
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~a~lvVgADG~--~S~vR~ 172 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTL-KDGSM--LTARLVVGADGA--NSWLRN 172 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEE-cCCCE--EEeeEEEEeCCC--CcHHHH
Confidence 344455555554 89999999999985 34565543 45764 999999999994 444433
No 385
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.54 E-value=0.028 Score=59.58 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcC-----CCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRG-----NGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~-----~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+...+.|++++.+ .++++.. +.+.+.... +|+..++.+|.||-|.|.
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 4455666677789999765 5888753 444433211 233345999999999994
No 386
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.0024 Score=63.66 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=36.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
+.+++|||+|++|+.+|..|+..|.+|.|||++++.++..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 4689999999999999998889999999999999987753
No 387
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.52 E-value=0.0018 Score=74.68 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
.+|+|||||+||+++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3799999999999999999976 899999999875
No 388
>PRK07045 putative monooxygenase; Reviewed
Probab=96.51 E-value=0.042 Score=58.21 Aligned_cols=57 Identities=12% Similarity=0.297 Sum_probs=38.5
Q ss_pred HHHHHHHHHHh-CCCEEEeCCeEEEEeC--CeE--EEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 280 ITAFAEEKFSR-DGIDVKLGSMVVKVTD--KEI--FTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 280 ~~~~~~~~L~~-~GV~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+.+.+.+.+.+ .|++++++++|++++. +++ .+. ..+|++ +.+|.||-|.| ....+..
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~-~~~g~~--~~~~~vIgADG--~~S~vR~ 169 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT-LSDGER--VAPTVLVGADG--ARSMIRD 169 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE-eCCCCE--EECCEEEECCC--CChHHHH
Confidence 44555555543 5899999999999963 332 233 345764 99999999999 4544444
No 389
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.51 E-value=0.0025 Score=71.38 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
....+|||||+|.||++||..+++.|.+|+||||..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 345799999999999999999999999999999974
No 390
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.49 E-value=0.032 Score=59.28 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEe---CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.+.+.+.+.+.|++++++++++++. ++.+.+....+|+..++.+|+||-|-|. +..+..
T Consensus 106 ~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~--~S~VR~ 167 (390)
T TIGR02360 106 TRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF--HGVSRA 167 (390)
T ss_pred HHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC--chhhHH
Confidence 3445555666789999988877763 2333332212466446999999999994 444433
No 391
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.49 E-value=0.022 Score=60.74 Aligned_cols=49 Identities=16% Similarity=0.315 Sum_probs=34.8
Q ss_pred HHHHHHHHh-CCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 282 AFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 282 ~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+.+ .||+++.+++|++++ ++.+.+.. .+|++ +.+|+||-|-|.
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~lvIgADG~ 166 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTL-DNGQA--LTAKLVVGADGA 166 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEE-CCCCE--EEeCEEEEeCCC
Confidence 334444444 379999999999985 34555543 45764 999999999994
No 392
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.46 E-value=0.01 Score=59.11 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=30.3
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
..|||||+|.|||+++..+-..+-.|+|+|++..+
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 47999999999999999998777779999987444
No 393
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.45 E-value=0.025 Score=59.93 Aligned_cols=46 Identities=7% Similarity=0.143 Sum_probs=33.8
Q ss_pred CCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 291 DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.||+++.+++|++++ ++++++.. .+|++ +.+|.||-|.|. ++.+..
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~~~lvIgADG~--~S~vR~ 171 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTL-ESGAE--IEAKWVIGADGA--NSQVRQ 171 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC--CchhHH
Confidence 379999999999985 45555543 45764 999999999994 544443
No 394
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.45 E-value=0.0025 Score=70.23 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
..+|||||+| +|++||..+++.|.+|+||||....+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5799999999 999999999999999999999876554
No 395
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.43 E-value=0.0034 Score=69.60 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
...+|||||+|.||++||..+++.|.+|+||||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 4579999999999999999999999999999998754
No 396
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.39 E-value=0.038 Score=58.29 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 279 RITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 279 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.+.+.+.+.+.+. +++++.+++++++. ++++++.. +++ + +.+|+||-|-|. +..+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~~-~--~~adlvIgADG~--~S~vR~ 164 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDK-Q--IKCNLLIICDGA--NSKVRS 164 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEE-cCC-E--EeeCEEEEeCCC--CchhHH
Confidence 4455556666665 49999999999984 35565553 334 3 999999999994 444433
No 397
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.37 E-value=0.037 Score=60.91 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~ 270 (583)
.|+|||||.+|+-+|.+++.. +.+|.|+|+.+
T Consensus 8 DVvIIGGGi~G~~~A~~la~r--------------Gl~V~LvEk~d 39 (508)
T PRK12266 8 DLLVIGGGINGAGIARDAAGR--------------GLSVLLCEQDD 39 (508)
T ss_pred CEEEECcCHHHHHHHHHHHHC--------------CCeEEEEecCC
Confidence 899999999999999999875 67899999864
No 398
>PRK06185 hypothetical protein; Provisional
Probab=96.35 E-value=0.056 Score=57.62 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHh-CCCEEEeCCeEEEEe--CCeE---EEEEcCCCeeEEeecceEEEccCC
Q 007975 279 RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 279 ~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.+.+.+.+.+++ .||+++.+++++++. ++.+ .+.. .+|+ .++.+|.||.|.|.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~ 167 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-PDGP-GEIRADLVVGADGR 167 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-CCCc-EEEEeCEEEECCCC
Confidence 344555555655 489999999999985 3444 3332 3453 25999999999994
No 399
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.35 E-value=0.0034 Score=63.85 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEE--e--CC---eEEEEEcCCC-eeEEeecceEEEccCCCCchhHHHHHHHhCc
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKV--T--DK---EIFTKVRGNG-ETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v--~--~~---~v~~~~~~~G-~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~ 348 (583)
....++...+++.|++|+++++|+.| + +. +|++.+.... ....+.++.||+|+|.-..| .|+...|+
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp---~LLl~SGi 268 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP---RLLLRSGI 268 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH---HHHHHTTE
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCCh---hhhccccc
Confidence 34556666666669999999999999 4 22 3667664433 23467889999999943333 56666665
No 400
>PRK06996 hypothetical protein; Provisional
Probab=96.35 E-value=0.038 Score=58.85 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcC-CCeeEEeecceEEEccCC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRG-NGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~-~G~~~~i~~D~vI~a~G~ 333 (583)
..+.+.+.+.+++.|++++.++++++++. +++++...+ +|+ .++.+|+||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~-~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA-RTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc-eEEeeeEEEECCCC
Confidence 45677788888889999999999999853 566665421 232 25999999999993
No 401
>PRK07538 hypothetical protein; Provisional
Probab=96.35 E-value=0.046 Score=58.51 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHh-CC-CEEEeCCeEEEEeC--CeE--EEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 282 AFAEEKFSR-DG-IDVKLGSMVVKVTD--KEI--FTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 282 ~~~~~~L~~-~G-V~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
+.+.+.+.+ .| +.++++++|++++. +++ .+.+..+|+..++.+|+||-|-|+ +..+..
T Consensus 106 ~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~--~S~vR~ 169 (413)
T PRK07538 106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGI--HSAVRA 169 (413)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCC--CHHHhh
Confidence 334444444 36 57999999999963 333 333322344346999999999994 444433
No 402
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.33 E-value=0.045 Score=60.29 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEeC--Ce---EEEEEcCCCeeEEeecceEEEccC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD--KE---IFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
+.+.+.+.+++.||+++++++|+++.. +. +.+.. .+|+..++.++.||+|+|
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~-~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKI-NGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEe-CCCeEEEEecCeEEEeCC
Confidence 445566667788999999999999863 33 33332 334545699999999998
No 403
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.33 E-value=0.032 Score=58.94 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=62.8
Q ss_pred EEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc--C---------c---c---------------
Q 007975 226 FVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--N---------M---F--------------- 276 (583)
Q Consensus 226 vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il--~---------~---~--------------- 276 (583)
|+|||||++|.-+|..|.+.. .+.+|.+|++.+... + . +
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999994331 367888887665431 0 0 0
Q ss_pred ----------------cHHHHHHHHHHHHhCCCEEEeCCeEEEEeCCeE-EEEEcCCCeeEEeecceEEEccCCCC
Q 007975 277 ----------------DKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEI-FTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 277 ----------------~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v-~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
...+.+.+.+.+...| .+..+++|++|+.+.. ....+.+|++ +.++.||-|.|..+
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~--i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRT--IRARVVVDARGPSS 142 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCE--EEeeEEEECCCccc
Confidence 0223455566666344 5677889999976432 2222345764 99999999999543
No 404
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.32 E-value=0.035 Score=58.83 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhC-CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 280 ITAFAEEKFSRD-GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 280 ~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+.+.+.+.+. ++. +.+++|++++ ++++++.. .+|++ +.+|.||.|.|..
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 166 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTL-ADGTT--LSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEE-CCCCE--EEEeEEEEecCCC
Confidence 345555666665 465 7899999985 45566553 44654 9999999999953
No 405
>PLN03000 amine oxidase
Probab=96.31 E-value=0.0039 Score=71.36 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=37.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCc
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPL 98 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~ 98 (583)
..++|+|||||++|+.+|..|.+.|++|+|+|+++..++...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 468999999999999999999999999999999988777543
No 406
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.31 E-value=0.053 Score=57.77 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe-----CCe--EEEEEcC----CCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT-----DKE--IFTKVRG----NGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~-----~~~--v~~~~~~----~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+...+.|++++.++ ++.++ ++. +++.... +|+..++.++.||-|.|.
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCc
Confidence 33456666778899998775 66653 122 3332211 144345999999999994
No 407
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.29 E-value=0.0039 Score=69.38 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
...+|||||+|.|||+||..+++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999998
No 408
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.27 E-value=0.0045 Score=66.64 Aligned_cols=92 Identities=28% Similarity=0.484 Sum_probs=26.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC-----------c------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN-----------M------------------ 275 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~-----------~------------------ 275 (583)
.|||||||+.|+-.|...++. +.+|.|||+.+.+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~--------------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA--------------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--------------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHC--------------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 389999999999999999885 689999998775421 0
Q ss_pred --------------------ccHH-HHHHHHHHHHhCCCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEE
Q 007975 276 --------------------FDKR-ITAFAEEKFSRDGIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVW 329 (583)
Q Consensus 276 --------------------~~~~-~~~~~~~~L~~~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~ 329 (583)
++++ ....+.+.+++.||++++++.|.++..+ +|++.+.. | ..++.++.+|=
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-g-~~~i~A~~~ID 144 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-G-RKEIRAKVFID 144 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccc
Confidence 0001 1123445566789999999999998633 24444322 4 34699999999
Q ss_pred ccC
Q 007975 330 STG 332 (583)
Q Consensus 330 a~G 332 (583)
|+|
T Consensus 145 aTG 147 (428)
T PF12831_consen 145 ATG 147 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 999
No 409
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.22 E-value=0.0043 Score=69.60 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
...+|||||||.||++||..+++.|.+|+||||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35799999999999999999999999999999874
No 410
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.20 E-value=0.0081 Score=69.30 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=31.9
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~ 270 (583)
..+++|+|||+||.|+++|..|+.. +.+|+++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~--------------Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS--------------GHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC--------------CCeEEEEcccc
Confidence 4789999999999999999999874 68999999753
No 411
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.20 E-value=0.0059 Score=67.76 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
...+|||||+|.||++||..++ .|.+|+||||.+...
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g 44 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT 44 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence 4579999999999999999996 599999999986543
No 412
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.17 E-value=0.0055 Score=67.46 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
..+|||||+|.||++||..+++ |.+|+||||.+...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCC
Confidence 5799999999999999999976 89999999986543
No 413
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.16 E-value=0.0042 Score=69.51 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCC---CeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPS---YDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g---~~Vtlie~~~~ 92 (583)
..+|||||||.||++||..+++.| .+|+||||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 468999999999999999999887 89999998754
No 414
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.16 E-value=0.0044 Score=68.97 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.1
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
..+|||||+|.+|+++|..+++.|.+|+|||+....+.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 579999999999999999999999999999998765554
No 415
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.16 E-value=0.036 Score=59.31 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 292 GIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 292 GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
++.++.+++|++++ ++++++.. .+|++ +.+|.||.|.|..
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vVgADG~~ 158 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLF-TDGTE--YRCDLLIGADGIK 158 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEE-cCCCE--EEeeEEEECCCcc
Confidence 46678899999986 35555553 34664 8999999999953
No 416
>PRK12839 hypothetical protein; Provisional
Probab=96.13 E-value=0.0057 Score=68.18 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=35.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
...+|||||+|.+|+++|..+++.|.+|+|||+....+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4679999999999999999999999999999998776554
No 417
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.12 E-value=0.006 Score=68.23 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=35.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
...+|||||+|.||++||..+++.|.+|+|+|+....+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 357999999999999999999999999999999986554
No 418
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.11 E-value=0.0063 Score=67.70 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchh
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLP 100 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~ 100 (583)
.....+|||||+| +|++||..+++.|.+|+||||.+.+++...+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 3447899999999 89999999999999999999998877754433
No 419
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.10 E-value=0.054 Score=58.09 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=68.0
Q ss_pred cceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC----------------------------
Q 007975 223 ILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN---------------------------- 274 (583)
Q Consensus 223 ~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~---------------------------- 274 (583)
.++++|||+|++|.-.|..|.+. +.+++++|+.+.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--------------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--------------GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--------------CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 35999999999999999999874 567777777654321
Q ss_pred ------------c-c-c-HHHHHHHHHHHHhCCC--EEEeCCeEEEEeCC---e--EEEEEcCCCeeEEeecceEEEccC
Q 007975 275 ------------M-F-D-KRITAFAEEKFSRDGI--DVKLGSMVVKVTDK---E--IFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 275 ------------~-~-~-~~~~~~~~~~L~~~GV--~v~~~~~V~~v~~~---~--v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
. + + .++.+++....++-++ .+.++++|.+|+.. . |...+..++ ..+.-+|.|++|+|
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTG 150 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEccc
Confidence 0 0 0 1455667776776665 67888877777642 2 444332211 23577999999999
Q ss_pred CCCchhH
Q 007975 333 IAPHAII 339 (583)
Q Consensus 333 ~~~~p~~ 339 (583)
.-..|.+
T Consensus 151 h~~~P~~ 157 (448)
T KOG1399|consen 151 HYVEPRI 157 (448)
T ss_pred CcCCCCC
Confidence 7643554
No 420
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.09 E-value=0.066 Score=57.95 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEeC-----CeE--EEEEc----CCCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVTD-----KEI--FTKVR----GNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~~-----~~v--~~~~~----~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+.+...+.|++++.+ .+++++. +.+ ++.+. .+|+..++.+|.||-|.|.
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 3445556667789999875 5766641 223 33321 0143335999999999994
No 421
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.09 E-value=0.08 Score=48.40 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=25.2
Q ss_pred EEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecC
Q 007975 227 VIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAA 269 (583)
Q Consensus 227 vVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~ 269 (583)
+|||+|++|+-++..|.+.. ......+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~---------~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA---------DPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc---------CCCCCCEEEEEcCC
Confidence 59999999999999988763 11135678887763
No 422
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0087 Score=62.56 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
...++|||||||.||..||...++.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45789999999999999999999999999999865
No 423
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.06 E-value=0.075 Score=57.36 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEeC--C----eEEEEEcCCCeeEEeecceEEEccCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVTD--K----EIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~----~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.+.+.+.+.+++.||+++++++|+++.. + ++++.. .+++...+.++.||+|+|-
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 4556667778889999999999999852 2 244443 3455446889999999994
No 424
>PLN02815 L-aspartate oxidase
Probab=96.04 E-value=0.0074 Score=67.42 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFA 94 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~ 94 (583)
...+|||||+|.||++||..+++.| +|+||||.+...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g 64 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE 64 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence 3579999999999999999999889 999999987543
No 425
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.99 E-value=0.0055 Score=68.55 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=30.0
Q ss_pred eEEEECCcHHHHHHHHhcC----CCCCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~----~~g~~Vtlie~~~~ 92 (583)
+|||||||.||+.||..++ +.|.+|+||||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999997 67999999999753
No 426
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.98 E-value=0.072 Score=56.45 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=36.3
Q ss_pred HHHHHHHHHh-CCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 281 TAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 281 ~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
.+.+.+.+.+ .|++++.+++|+++. ++++.+.. .+|+. +.+|.||.|.|..
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTL-DDGET--LTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 3445555555 489999999999985 34565543 34654 8999999999954
No 427
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.98 E-value=0.012 Score=60.44 Aligned_cols=103 Identities=19% Similarity=0.293 Sum_probs=66.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcC----CCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEe
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLN----NPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEA 132 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~----~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~ 132 (583)
.+++|-|||+|+-|-.+|..|. ..|.+|.=+=.+++. .+.+-++.+...--+-+++.|+.|+ -++
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----------m~kiLPeyls~wt~ekir~~GV~V~-pna 414 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----------MEKILPEYLSQWTIEKIRKGGVDVR-PNA 414 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----------hhhhhHHHHHHHHHHHHHhcCceec-cch
Confidence 4578999999999999998887 255666544333331 1122233333444455667786664 477
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTF 178 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~ 178 (583)
.|.++....+.+.+.-.++ .++..|.+|+|+|..||.-
T Consensus 415 ~v~sv~~~~~nl~lkL~dG--------~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDG--------SELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhccceEEEecCC--------CeeeeeeEEEEecCCCchh
Confidence 7877766655554443321 1899999999999998863
No 428
>PLN02976 amine oxidase
Probab=95.95 E-value=0.0067 Score=72.07 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=36.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~ 96 (583)
..++|+|||||++|+++|..|.+.|++|+|+|+++..++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4578999999999999999999999999999999887665
No 429
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.93 E-value=0.072 Score=58.97 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.3
Q ss_pred HHHHHHHHhC-CCEEEeCCeEEEEe---CCeEEEEEcCCCeeEEeecceEEEccCCC
Q 007975 282 AFAEEKFSRD-GIDVKLGSMVVKVT---DKEIFTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 282 ~~~~~~L~~~-GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
..+.+.+++. |++++.+ .++++. ++.+....+.+|.. +.||.||+|+|..
T Consensus 100 ~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~--I~Ad~VILATGtf 153 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLK--FRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCE--EECCEEEEccCcc
Confidence 4555666666 8888765 566652 33444333345764 9999999999965
No 430
>PRK08275 putative oxidoreductase; Provisional
Probab=95.91 E-value=0.0059 Score=67.99 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
...+|||||||.||++||..+++. |.+|+||||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 347999999999999999999854 789999999864
No 431
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.88 E-value=0.026 Score=59.72 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=30.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il 273 (583)
+|+|||||++|+|+|..|++. +.+|+|+++.+...
T Consensus 4 dVvVIGGGlAGleAAlaLAr~--------------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKR--------------GVPVELYEMRPVKK 38 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhC--------------CCcEEEEEccCccC
Confidence 899999999999999999885 68999999776553
No 432
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.83 E-value=0.13 Score=56.10 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAAD 270 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~ 270 (583)
.|+|||+|.+|+-.|..+++. +.+|+|+++.+
T Consensus 6 DVvVVG~G~aGl~AA~~aa~~--------------G~~V~vlEk~~ 37 (466)
T PRK08274 6 DVLVIGGGNAALCAALAAREA--------------GASVLLLEAAP 37 (466)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------------CCeEEEEeCCC
Confidence 799999999999999999875 57899998765
No 433
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.81 E-value=0.011 Score=66.19 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=36.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTP 97 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p 97 (583)
...+|||||+|.+|+++|..+++.|.+|+|||+.+..+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 35799999999999999999999999999999987766544
No 434
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.77 E-value=0.011 Score=71.39 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAF 95 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~ 95 (583)
+...+|||||+|.||++||..+++.|.+|+|+||.+..++
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 3457999999999999999999999999999999876544
No 435
>PRK02106 choline dehydrogenase; Validated
Probab=95.72 E-value=0.011 Score=66.12 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCC-CCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNN-PSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~-~g~~Vtlie~~~~ 92 (583)
..+++||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34799999999999999999998 8999999999864
No 436
>PLN02985 squalene monooxygenase
Probab=95.66 E-value=0.18 Score=55.60 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhC-CCEEEeCCeEEEE-eCCe----EEEEEcCCCeeEEeecceEEEccCCCCchhHHH
Q 007975 279 RITAFAEEKFSRD-GIDVKLGSMVVKV-TDKE----IFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKD 341 (583)
Q Consensus 279 ~~~~~~~~~L~~~-GV~v~~~~~V~~v-~~~~----v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 341 (583)
.+.+.+.+.+++. ||+++.++ ++++ ++++ |++.. .+|++.++.+|+||.|.|. ...++.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gt-vv~li~~~~~v~gV~~~~-~dG~~~~~~AdLVVgADG~--~S~vR~ 212 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKN-SAGEETTALAPLTVVCDGC--YSNLRR 212 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeee-EEEEEEcCCEEEEEEEEc-CCCCEEEEECCEEEECCCC--chHHHH
Confidence 3445555555554 79988764 5554 3322 44432 3566556789999999994 444443
No 437
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.65 E-value=0.053 Score=60.06 Aligned_cols=127 Identities=21% Similarity=0.327 Sum_probs=83.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------Cccc-----HHHHHHHHHHHHhCC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL-------NMFD-----KRITAFAEEKFSRDG 292 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il-------~~~~-----~~~~~~~~~~L~~~G 292 (583)
++||||.|..|.-+..++.+... ....||++-..+++- +-+. +++.-.-.+..+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 89999999999999999887432 246788886665431 1111 222333346778999
Q ss_pred CEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhHHHHHHHhCc-CCCcceEeCCCCccCCCCCEEEc
Q 007975 293 IDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAIIKDFMKQVGQ-TNRRALATDEWLRVEGSDSIYAL 371 (583)
Q Consensus 293 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~~-~~~g~i~Vd~~l~~~~~~~VyAi 371 (583)
|+++++.+|+.|+.+.-.+.+ +.|.+ +.+|-+|+|+| +.|++.. ++- +..| +. .+| +.++++++
T Consensus 74 i~L~~~~~v~~idr~~k~V~t-~~g~~--~~YDkLilATG--S~pfi~P----iPG~~~~~-v~---~~R--~i~D~~am 138 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTT-DAGRT--VSYDKLIIATG--SYPFILP----IPGSDLPG-VF---VYR--TIDDVEAM 138 (793)
T ss_pred cEEEcCCeeEEeccCcceEEc-cCCcE--eecceeEEecC--ccccccC----CCCCCCCC-ee---EEe--cHHHHHHH
Confidence 999999999999876544443 34775 99999999999 5554311 211 1111 11 122 36788888
Q ss_pred Cccccc
Q 007975 372 GDCATV 377 (583)
Q Consensus 372 GD~a~~ 377 (583)
+||+..
T Consensus 139 ~~~ar~ 144 (793)
T COG1251 139 LDCARN 144 (793)
T ss_pred HHHHhc
Confidence 888654
No 438
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.63 E-value=0.0094 Score=66.69 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCeEEEECCcHHHHHHHHhcCCC--CCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNP--SYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~--g~~Vtlie~~~~ 92 (583)
..+|||||||.||++||..+++. +.+|+||||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 46899999999999999999855 589999999854
No 439
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.62 E-value=0.0072 Score=67.84 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=29.6
Q ss_pred EEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 61 VVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 61 VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
|||||+|.||++||..+++.|.+|+||||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999986
No 440
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.60 E-value=0.014 Score=60.57 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNYFAFT 96 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~~~~~ 96 (583)
..++|+|+|||.+||++|++|++.+ ..|||+|..+..++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 4579999999999999999999655 457779999887653
No 441
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.60 E-value=0.02 Score=59.59 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCC--CeEEEEcCCCC
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPS--YDVQVISPRNY 92 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g--~~Vtlie~~~~ 92 (583)
....++|+|||||-++..++..|.+.+ .+|++|-|+..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 345689999999999999999988443 68999998854
No 442
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.58 E-value=0.14 Score=57.86 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCC--CEEEeCCeEEEEeCC-----eEE--EEEc---CCCeeEEeecceEEEccCCCCchhHHHH
Q 007975 280 ITAFAEEKFSRDG--IDVKLGSMVVKVTDK-----EIF--TKVR---GNGETSSMPYGMVVWSTGIAPHAIIKDF 342 (583)
Q Consensus 280 ~~~~~~~~L~~~G--V~v~~~~~V~~v~~~-----~v~--~~~~---~~G~~~~i~~D~vI~a~G~~~~p~~~~l 342 (583)
+.+.+.+.+.+.| |++..++++++++.+ .|+ +.+. .+|+.+++.+|.||-|-| .+..++..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDG--a~S~VR~~ 215 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDG--ARSRVRKA 215 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCC--CchHHHHh
Confidence 4556667777766 578889999998632 244 3332 136444699999999999 55555443
No 443
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.57 E-value=0.011 Score=65.46 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYF 93 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~ 93 (583)
...+|||||+|.||++||..+++. .+|+||||....
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 346999999999999999999875 899999998653
No 444
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.012 Score=58.74 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+...|-|||||.||-.||+++++.|..|.|.|-++
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 35689999999999999999999999999999664
No 445
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.014 Score=58.54 Aligned_cols=106 Identities=22% Similarity=0.307 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcE--EEEEe
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDI--CFWEA 132 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v--~~~~~ 132 (583)
+..+-+-+|||||+.+|.||-.|+.-|++|||.=|+--+ . | -.+++.+.+.+.+..+|+.+ +++..
T Consensus 195 ~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L------r----G--FDqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 195 PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL------R----G--FDQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec------c----c--ccHHHHHHHHHHHHHhCCceeecccce
Confidence 344568999999999999999999999999998776221 1 1 13467778888888888543 12233
Q ss_pred EEEEEecCCCEEEEecCCCCCCCCCceEEeecCEEEEccCCCCCC
Q 007975 133 ECFKIDAENKKVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANT 177 (583)
Q Consensus 133 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~ 177 (583)
.|+.++...-.|...... ..++.+-.||.++.|.|-.+..
T Consensus 263 ~Veq~~~g~l~v~~k~t~-----t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTN-----TGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eeeeccCCcEEEEeeccc-----ccccccchhhhhhhhhccccch
Confidence 566666544344433322 1122366799999999987654
No 446
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.1 Score=55.42 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=27.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~ 271 (583)
+|+|||||++|+.+|.+|....+ ....|++++..++
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~-----------~~~~Isi~e~~~~ 38 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPR-----------PSGLISIFEPRPN 38 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-----------CCCceEEeccccc
Confidence 89999999999999999987532 2233777776554
No 447
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.46 E-value=0.026 Score=61.11 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+.++|+|+|+|..|+++|+.|.+.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45899999999999999999999999999999874
No 448
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.44 E-value=0.067 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=29.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcc
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHI 272 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~i 272 (583)
+|+|||+|..|+-+|..|... +.+|++++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a--------------G~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA--------------GREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc--------------CcEEEEEEcCCCc
Confidence 799999999999999999875 6799999876543
No 449
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.39 E-value=0.12 Score=56.11 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEeCCeEEEEe--C-CeEEEEEcCCCeeEEeecceEEEccCC
Q 007975 282 AFAEEKFSRDGIDVKLGSMVVKVT--D-KEIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 282 ~~~~~~L~~~GV~v~~~~~V~~v~--~-~~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+.+.+..+++||+++.++ |+++. + +.|......+|++ +.+|.+|=|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~--i~ad~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRT--IEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEE--EEESEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCE--EEEeEEEECCCc
Confidence 455566678899999885 66553 3 4454444456765 999999999995
No 450
>PRK08275 putative oxidoreductase; Provisional
Probab=95.34 E-value=0.21 Score=55.60 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe---CCeE---EEEEcCCCeeEEeecceEEEccCCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT---DKEI---FTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v---~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+.+.+.+++.||+++.++.++++. ++.+ ...+..+|+...+.++.||+|+|-.
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 34555566677899999999999984 2323 3333345765568999999999953
No 451
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.34 E-value=0.016 Score=68.32 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|||||||.||+.||..+++.|.+|+||||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999998763
No 452
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.27 E-value=0.015 Score=64.34 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+.+|||||||.||+.||..++..|.+|+|+||.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 3467999999999999999999999999999998744
No 453
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.09 E-value=0.026 Score=47.66 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
+.++|+|||||..|..-+..|.+.|.+|+||.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4689999999999999999999999999999977
No 454
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.09 E-value=0.23 Score=54.62 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEeC--Ce--EEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVTD--KE--IFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~~--~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
...+....+++|++++.+++|+++.. +. +++.+.. |++.++.++.||.|+|.....
T Consensus 158 ~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 158 VVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-GETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred HHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-CCEEEEEecEEEECCCccHHH
Confidence 33444556788999999999999853 22 3333322 555569999999999954443
No 455
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.08 E-value=0.02 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
..+|||||+|.||++||..++ +.+|+||||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 579999999999999999997 569999999865
No 456
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.02 E-value=0.21 Score=57.03 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCch
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPHA 337 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 337 (583)
.+.+.+.+++ |++++.+++|++++ ++.+++.. .+|.. +.+|.||.|+|.....
T Consensus 411 ~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t-~~g~~--~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 411 CRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDF-AGGTL--ASAPVVVLANGHDAAR 465 (662)
T ss_pred HHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEE-CCCcE--EECCEEEECCCCCccc
Confidence 3444455566 89999999999885 45566543 44543 7899999999976543
No 457
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.01 E-value=0.26 Score=55.09 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEe--CCeE---EEEEcCCCeeEEeecceEEEccCC
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
...+.+.+++.||+++.++.++++. ++.+ ...+..+|+...+.++.||+|+|-
T Consensus 132 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 132 LHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 3444555667799999999999874 3433 233334566556899999999994
No 458
>PRK07121 hypothetical protein; Validated
Probab=94.93 E-value=0.34 Score=53.15 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEe--CC-eE---EEEEcCCCeeEEeec-ceEEEccCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DK-EI---FTKVRGNGETSSMPY-GMVVWSTGI 333 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~v---~~~~~~~G~~~~i~~-D~vI~a~G~ 333 (583)
.+.+.+.+.+++.||+|+++++++++. ++ .+ +.. .+++...+.+ +.||+|+|-
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~--~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEAR--RYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEE--eCCcEEEEEeCCEEEECCCC
Confidence 345556667778899999999999984 22 33 332 2354446888 999999993
No 459
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=94.88 E-value=0.012 Score=55.11 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=33.4
Q ss_pred CCeEEEECCcHHHHHHHHhcC--CCCCeEEEEcCCCCCCCC
Q 007975 58 KKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYFAFT 96 (583)
Q Consensus 58 ~~~VVIIGgG~aGl~aA~~L~--~~g~~Vtlie~~~~~~~~ 96 (583)
..+|||||+|.+||++|+.+. ++..+|.+||..-..++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 358999999999999999997 788999999988665544
No 460
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.80 E-value=0.032 Score=61.78 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+++||||+|.+|..+|..|+..+++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998853
No 461
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.17 Score=48.06 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=63.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhh-hHhHhhhc--CCCCCCceEEEEecCCcccCc-----ccHHHHHHHHHHHHhCCCEEE
Q 007975 225 HFVIVGGGPTGVEFAAELHDFV-DEDLFKLY--PKVKDSVKITLLEAADHILNM-----FDKRITAFAEEKFSRDGIDVK 296 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~-~~~~~~~~--p~~~~~~~Vtlv~~~~~il~~-----~~~~~~~~~~~~L~~~GV~v~ 296 (583)
+|+|||.||.+.-.|..+++.- +..+.+-+ ..+.++-+.+--..-+. .|. .++++.+.+.++-++.|-+++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veN-fPGFPdgi~G~~l~d~mrkqs~r~Gt~i~ 88 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVEN-FPGFPDGITGPELMDKMRKQSERFGTEII 88 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecccc-CCCCCcccccHHHHHHHHHHHHhhcceee
Confidence 8999999999999888877641 00011100 11222333322222111 233 357888999999999999999
Q ss_pred eCCeEEEEeCC--eEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 297 LGSMVVKVTDK--EIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 297 ~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
+. .|..++-. -.++.. +.+ .+.+|.||+|+|...
T Consensus 89 tE-tVskv~~sskpF~l~t--d~~--~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 89 TE-TVSKVDLSSKPFKLWT--DAR--PVTADAVILATGASA 124 (322)
T ss_pred ee-ehhhccccCCCeEEEe--cCC--ceeeeeEEEecccce
Confidence 86 46666533 233332 233 389999999999543
No 462
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.46 E-value=0.38 Score=49.54 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=55.4
Q ss_pred hHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEeC--CeEEEEEcCCCeeEEeecce
Q 007975 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVTD--KEIFTKVRGNGETSSMPYGM 326 (583)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 326 (583)
++.+.+|.+.+...--+.......+ -+..+...+.+.++++|++++.+++|++++. +.+....+.+|. +.+|.
T Consensus 110 e~~~~~p~l~~~~~~g~~~~~~g~v--~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~---~~a~~ 184 (337)
T TIGR02352 110 ALRRLEPYLSGGIRGAVFYPDDAHV--DPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGD---VQADQ 184 (337)
T ss_pred HHHHhCCCCCcccceEEEcCCCceE--ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCE---EECCE
Confidence 3445566654333334444433322 2467888888999999999999999999964 445544444453 89999
Q ss_pred EEEccCCCCc
Q 007975 327 VVWSTGIAPH 336 (583)
Q Consensus 327 vI~a~G~~~~ 336 (583)
||+|+|....
T Consensus 185 vV~a~G~~~~ 194 (337)
T TIGR02352 185 VVLAAGAWAG 194 (337)
T ss_pred EEEcCChhhh
Confidence 9999995433
No 463
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.44 E-value=0.037 Score=61.39 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred eEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~~ 92 (583)
++||||||.||+.+|.+|++.+ ++|.|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999877 79999999864
No 464
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.35 E-value=0.042 Score=57.36 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhcccc
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGT 106 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~ 106 (583)
...+++||||+|+.||.||.+|++.|.+|.++|++..+++.....+...|.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGf 62 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGF 62 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcccc
Confidence 456899999999999999999999999999999997766665555555553
No 465
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.30 E-value=0.08 Score=40.97 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.6
Q ss_pred EEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc
Q 007975 228 IVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (583)
Q Consensus 228 VVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il 273 (583)
|||+|.+|+-+|..|.+. +.+|+|+|+.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--------------g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--------------GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--------------TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC--------------CCcEEEEecCcccC
Confidence 899999999999999874 57999999998764
No 466
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.29 E-value=0.048 Score=52.31 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
+.++|+|||||..|..-+..|.+.|.+||||+++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3579999999999999999999999999999976
No 467
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.29 E-value=0.055 Score=49.55 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
+.++|+|||||-.|..-+..|...|++|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4689999999999999999999999999999754
No 468
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.17 E-value=0.059 Score=54.09 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...+|+|||+|.|||-+|..|+..|.+|.|+|+++.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 357999999999999999999999999999998754
No 469
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=93.99 E-value=0.042 Score=54.75 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcC--CCCCeEEEEcCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLN--NPSYDVQVISPRNYF 93 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~--~~g~~Vtlie~~~~~ 93 (583)
..++++||||||..|++.|+.|. .++.+|.|+|++..+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 45789999999999999999876 679999999998654
No 470
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.95 E-value=0.58 Score=52.05 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe--CCe-EE---EEEcCCCeeEEeecceEEEccCC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DKE-IF---TKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~-v~---~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
+...+.+.+++.||++++++.++++. +++ |. ..+..+|+...+.++.||+|+|-
T Consensus 136 i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 136 MMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 34445555667899999999999873 333 33 22324566557899999999994
No 471
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.94 E-value=0.029 Score=55.97 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=58.6
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc--Ccc---cHHHHHHH-----HHHHHhC
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL--NMF---DKRITAFA-----EEKFSRD 291 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il--~~~---~~~~~~~~-----~~~L~~~ 291 (583)
+...|+|||||..|+-+|..+.+.+. .-+|.+|+..+.-. |.+ +..+...- +..|--.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~ 105 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK 105 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC
Confidence 34589999999999999999887542 35788888776431 221 11111000 0111112
Q ss_pred CCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 292 GIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
|.+.+. .+|++++++.=++.. .+|++ |.+|.+|+|+|+.-
T Consensus 106 ~a~wi~-ekv~~f~P~~N~v~t-~gg~e--IsYdylviA~Giql 145 (446)
T KOG3851|consen 106 GATWIK-EKVKEFNPDKNTVVT-RGGEE--ISYDYLVIAMGIQL 145 (446)
T ss_pred CcHHHH-HHHHhcCCCcCeEEc-cCCcE--EeeeeEeeeeecee
Confidence 333332 467777765433332 34775 99999999999643
No 472
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.92 E-value=0.31 Score=51.14 Aligned_cols=82 Identities=9% Similarity=0.131 Sum_probs=58.4
Q ss_pred EEecCCcccCc--ccHHHHHHHHHHHHhCCCEEEeCCeEEEEeCCeEEEEEcCCCeeEEeecceEEEccCCCCchhH---
Q 007975 265 LLEAADHILNM--FDKRITAFAEEKFSRDGIDVKLGSMVVKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAPHAII--- 339 (583)
Q Consensus 265 lv~~~~~il~~--~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~--- 339 (583)
-.+...++.|. -...+.+.+...+++.||+|+++++|++|+++...+....++. .+.+|.||+|+|-.+-|.+
T Consensus 71 ~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~--~~~a~~vIlAtGG~s~p~~Gs~ 148 (376)
T TIGR03862 71 FVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQS--TIEADAVVLALGGASWSQLGSD 148 (376)
T ss_pred EECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCce--EEecCEEEEcCCCccccccCCC
Confidence 34566677774 3467889999999999999999999999966544444322223 3899999999996655544
Q ss_pred ---HHHHHHhCc
Q 007975 340 ---KDFMKQVGQ 348 (583)
Q Consensus 340 ---~~l~~~~~~ 348 (583)
-.+++++|.
T Consensus 149 g~gy~la~~lGh 160 (376)
T TIGR03862 149 GAWQQVLDQRGV 160 (376)
T ss_pred cHHHHHHHHCCC
Confidence 235556654
No 473
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.91 E-value=0.21 Score=57.82 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=26.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCc
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADH 271 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~ 271 (583)
+|+|||||+.|+-+|..|++.. ++.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCCC
Confidence 7999999999999999887742 1456777776653
No 474
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.87 E-value=0.11 Score=52.57 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=67.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCchhhhccccCCCcccchhHHHHHHhCCCcEEEEEeEE
Q 007975 55 GIKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVDICFWEAEC 134 (583)
Q Consensus 55 ~~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~~~~~p~l~~~~~g~~~~~~i~~~~~~~~~~~~i~v~~~~~~v 134 (583)
...++|++|||||+.++..|--++..|.++.|+=|.+...-. . .+.+...+.+.+...+++++ -+..+
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~---------F--D~~i~~~v~~~~~~~ginvh-~~s~~ 253 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG---------F--DEMISDLVTEHLEGRGINVH-KNSSV 253 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc---------h--hHHHHHHHHHHhhhcceeec-ccccc
Confidence 456899999999999999998888889999988777643211 0 11334445566667776664 35555
Q ss_pred EEEecCCC---EEEEecCCCCCCCCCceEEeecCEEEEccCCCCCCCC
Q 007975 135 FKIDAENK---KVYCRSSQNTNLNGKEEFCMDYDYLVIAMGARANTFN 179 (583)
Q Consensus 135 ~~id~~~~---~v~~~~~~~~~~~~~~~~~i~yD~LViAtG~~~~~~~ 179 (583)
+.+..... .+....+. ....|.|+.|+|-.|+.-+
T Consensus 254 ~~v~K~~~g~~~~i~~~~~----------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 254 TKVIKTDDGLELVITSHGT----------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred eeeeecCCCceEEEEeccc----------cccccEEEEEecCCCCccc
Confidence 55543322 22222221 3449999999999987654
No 475
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=0.16 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHhh
Q 007975 224 LHFVIVGGGPTGVEFAAELHDFV 246 (583)
Q Consensus 224 ~~vvVVGgG~tgvE~A~~l~~~~ 246 (583)
..|+|||||..|+|.|...+++.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG 27 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMG 27 (621)
T ss_pred CceEEECCCccchHHHHhhhccC
Confidence 38999999999999999998874
No 476
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.83 E-value=0.69 Score=49.84 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCCeEEEEe--CCeEEE-EEcCCCeeEEeecceEEEccCC
Q 007975 278 KRITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIFT-KVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 278 ~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~-~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
..+.+.+.+.+++ .||+|++++.++++. ++.+.- ....+|+...+.++.||+|+|-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3455566666664 599999999999974 343321 1112354445899999999994
No 477
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.81 E-value=0.048 Score=49.92 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.2
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+|.|||||..|.++|..|+..|++|+|..+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999874
No 478
>PLN02785 Protein HOTHEAD
Probab=93.80 E-value=0.07 Score=59.62 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
...++++|||||.||+.+|.+|.+ +.+|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446899999999999999999998 689999999864
No 479
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.77 E-value=0.093 Score=51.07 Aligned_cols=92 Identities=25% Similarity=0.359 Sum_probs=56.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCC-----
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGS----- 299 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~----- 299 (583)
.++|||||-.|+.+|..|+.+. +..+|.|+...+-+-.- .--+.+-++|++-.|+=.-.+
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~ 65 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPD 65 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhccc
Confidence 3789999999999999998764 35689999877643211 112233344544443311100
Q ss_pred ------eEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 300 ------MVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 300 ------~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
.|+.++ +..+...+ |++ +.++.+++|+|.+|.
T Consensus 66 f~~~~~~v~~~~s~ehci~t~~---g~~--~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 66 FRRFLNDVVTWDSSEHCIHTQN---GEK--LKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHHHhhhhhccccceEEecC---Cce--eeEEEEEEecCCCcc
Confidence 133332 23455443 876 999999999997654
No 480
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.52 E-value=0.9 Score=49.80 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHh-CCCEEEeCCeEEEEe--CCeEE---EEEcCCCeeEEeecceEEEccCCCC
Q 007975 279 RITAFAEEKFSR-DGIDVKLGSMVVKVT--DKEIF---TKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 279 ~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+.+.+.+.+++ .||+++.++.++++. ++.+. +.+ .++...+.++.||+|+|-..
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWN--RETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEE--CCcEEEEEcCEEEECCCccc
Confidence 455566666766 699999999999985 33333 332 23334589999999999543
No 481
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.47 E-value=0.085 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCCCeEEEEcCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPSYDVQVISPR 90 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~ 90 (583)
..++|+|||||-.|...+..|.+.|.+|+||++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
No 482
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.43 E-value=0.043 Score=59.14 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeEEEEeC----CeEEEEEcCCCeeEEeecceEEEccC
Q 007975 278 KRITAFAEEKFSRDGIDVKLGSMVVKVTD----KEIFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 278 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~----~~v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
..+.+.+.+.+++.|++|+++++|+++.. +.++-....++. .++.++.||+|+|
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~-~~i~ak~VIlAtG 180 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT-HRITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc-EEEEcCEEEEcCC
Confidence 45777788888999999999999999852 234321111122 2488999999999
No 483
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.42 E-value=0.076 Score=54.92 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccC
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILN 274 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~ 274 (583)
.|+|||||++|+-+|..|++. +.+|+++|+.+.+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~--------------G~~v~i~E~~~~~~~ 38 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA--------------GIDVTIIERRPDPRP 38 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--------------TCEEEEEESSSSCCC
T ss_pred eEEEECCCHHHHHHHHHHHhc--------------ccccccchhcccccc
Confidence 799999999999999999985 689999999887643
No 484
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.32 E-value=1.1 Score=48.74 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEe--CCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+.+.+.+.+++.||+++.+ .++.+. ++.+..... +|+. +.++.||+|+|-..
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~--i~a~~VVLATGG~~ 175 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGEL--LKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEE--EEeCeEEECCCcCc
Confidence 34555566667778888765 566653 334432221 3543 88999999999543
No 485
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.15 E-value=0.53 Score=50.97 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=52.8
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeE
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMV 301 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V 301 (583)
++++++|+|+|.+|..+|..|+.. |.+|+++++.+. +.+ +...+.|.+.|++++.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--------------G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~ 62 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--------------GAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYP 62 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------------CCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcc
Confidence 346999999999999999999875 689999987642 122 22334567778887765443
Q ss_pred EEEeCCeEEEEEcCCCeeEEeecceEEEccCCCC
Q 007975 302 VKVTDKEIFTKVRGNGETSSMPYGMVVWSTGIAP 335 (583)
Q Consensus 302 ~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 335 (583)
.+ . .-.+|.||.++|+.+
T Consensus 63 ~~-------------~---~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 63 EE-------------F---LEGVDLVVVSPGVPL 80 (450)
T ss_pred hh-------------H---hhcCCEEEECCCCCC
Confidence 21 0 023688888888643
No 486
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.23 Score=50.35 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=68.9
Q ss_pred hccceEEEEcCChhHHHHHHHHHHhhhH--hHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeC
Q 007975 221 KRILHFVIVGGGPTGVEFAAELHDFVDE--DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLG 298 (583)
Q Consensus 221 ~~~~~vvVVGgG~tgvE~A~~l~~~~~~--~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~ 298 (583)
+..-.|+||||||.|...|-..++-.-+ ...+.|...- .+-.=|+---.....-++++...++++.++..|+++..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQv--ldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQV--LDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCee--ccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 4556999999999998888776654210 1112222200 00000000000112346889999999999999999988
Q ss_pred CeEEEEeC----Ce-EEEEEcCCCeeEEeecceEEEccCCCCc
Q 007975 299 SMVVKVTD----KE-IFTKVRGNGETSSMPYGMVVWSTGIAPH 336 (583)
Q Consensus 299 ~~V~~v~~----~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 336 (583)
.+.+.+++ ++ +.+. +.+|-. +++.++|+++|.+.+
T Consensus 287 qra~~l~~a~~~~~l~ev~-l~nGav--LkaktvIlstGArWR 326 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVE-LANGAV--LKARTVILATGARWR 326 (520)
T ss_pred hhhhcceecCCCCccEEEE-ecCCce--eccceEEEecCcchh
Confidence 88777765 33 3333 345775 999999999996544
No 487
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.081 Score=51.55 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 59 KKVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 59 ~~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
++++|||+|-.|.+.|..|.+.|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999884
No 488
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.96 E-value=1.3 Score=49.24 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeEEEEe--CC-e---EEEEE----cCCCeeEEeecceEEEccCC
Q 007975 279 RITAFAEEKFSRDGIDVKLGSMVVKVT--DK-E---IFTKV----RGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 279 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~---v~~~~----~~~G~~~~i~~D~vI~a~G~ 333 (583)
.+.+.+.+.+++.||+++.++.++++. ++ . +.+.+ ..++ ...+.++.||+|+|-
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g-~~~i~Ak~VIlATGG 208 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDG-VGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCc-EEEEEcCeEEECCCC
Confidence 445556666777889999999999884 22 2 34432 1223 235899999999994
No 489
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.81 E-value=0.094 Score=56.97 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=31.0
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRNY 92 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~~ 92 (583)
+|+|||.|.+|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998865
No 490
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.73 E-value=1 Score=50.42 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCEEEeCCeEEEEe--CCeE---EEEEcCCCeeEEeecceEEEccCCC
Q 007975 281 TAFAEEKFSRDGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 281 ~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
...+.+.+++.||+++.++.++++. ++.+ ...+..+|+...+.++.||+|+|-.
T Consensus 138 ~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 138 LHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3445555667799999999998873 3433 3223345665568999999999953
No 491
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.63 E-value=0.76 Score=50.78 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=56.2
Q ss_pred hHhhhcCCCCCCceEEEEecCCcccCcccHHHHHHHHHHHHhCCCEEEeCCeEEEEe--CCe---EEEEEcCCCeeEEee
Q 007975 249 DLFKLYPKVKDSVKITLLEAADHILNMFDKRITAFAEEKFSRDGIDVKLGSMVVKVT--DKE---IFTKVRGNGETSSMP 323 (583)
Q Consensus 249 ~~~~~~p~~~~~~~Vtlv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~ 323 (583)
.+.+.+|.+.++..-.+... +..+ -+..+...+.+..+++|++++.+++|++++ ++. +++.+..+|+..++.
T Consensus 102 e~~~~~P~l~~~~~ga~~~~-dg~v--dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~ 178 (516)
T TIGR03377 102 EALRLEPNLNPDLIGAVKVP-DGTV--DPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIE 178 (516)
T ss_pred HHHHHCCCCChhheEEEEeC-CcEE--CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEE
Confidence 34455677654433334433 2222 245677777788899999999999999995 344 344444456545699
Q ss_pred cceEEEccCCCCc
Q 007975 324 YGMVVWSTGIAPH 336 (583)
Q Consensus 324 ~D~vI~a~G~~~~ 336 (583)
++.||.|+|....
T Consensus 179 a~~VVnAaG~wa~ 191 (516)
T TIGR03377 179 AQVVINAAGIWAG 191 (516)
T ss_pred cCEEEECCCcchH
Confidence 9999999995444
No 492
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=92.60 E-value=1.9 Score=45.04 Aligned_cols=115 Identities=19% Similarity=0.364 Sum_probs=73.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc-------------------------------
Q 007975 225 HFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL------------------------------- 273 (583)
Q Consensus 225 ~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il------------------------------- 273 (583)
.|+||||||.|+..|..|..+..+. ..+.+|.+++....+.
T Consensus 78 Dv~IVG~GPAGLsaAIrlKQla~~~--------~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 78 DVVIVGAGPAGLSAAIRLKQLAAKA--------NKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred cEEEECCCchhHHHHHHHHHHHHhc--------CCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 8999999999999998887765321 1245666665443211
Q ss_pred -----------------Cc---cc---------HHHHHHHHHHHHhCCCEEEeCCeEEEEe---CCeEEEEEc------C
Q 007975 274 -----------------NM---FD---------KRITAFAEEKFSRDGIDVKLGSMVVKVT---DKEIFTKVR------G 315 (583)
Q Consensus 274 -----------------~~---~~---------~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v~~~~~------~ 315 (583)
|. ++ ..+.+++-+..++.||+|+.+....+|- ++.|.-..+ +
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 00 00 2356677788899999999998888872 333332211 1
Q ss_pred CCee-------EEeecceEEEccCCCCchhHHHHHHHhCc
Q 007975 316 NGET-------SSMPYGMVVWSTGIAPHAIIKDFMKQVGQ 348 (583)
Q Consensus 316 ~G~~-------~~i~~D~vI~a~G~~~~p~~~~l~~~~~~ 348 (583)
+|.. .++.+...|+|-|-.. .+++.++++.++
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G-~Lskqi~kkf~L 268 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHG-SLSKQIIKKFDL 268 (621)
T ss_pred CCCccccccccceecceeEEEeccccc-hhHHHHHHHhCc
Confidence 2211 1477888999998543 456667776665
No 493
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=92.58 E-value=0.26 Score=53.36 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcCC--CCCeEEEEcCCCCCCC
Q 007975 56 IKKKKVVVLGTGWAGTSFLKNLNN--PSYDVQVISPRNYFAF 95 (583)
Q Consensus 56 ~~~~~VVIIGgG~aGl~aA~~L~~--~g~~Vtlie~~~~~~~ 95 (583)
...++++|||||.+|-..++.++. ....|-.+|.++...+
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g 155 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTG 155 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcC
Confidence 446899999999999999999872 3345888898875443
No 494
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.38 E-value=1.3 Score=49.46 Aligned_cols=53 Identities=17% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCEEEeCCeEEEEe--CCe---EEEEEcCCCeeEEeecceEEEccC
Q 007975 280 ITAFAEEKFSRDGIDVKLGSMVVKVT--DKE---IFTKVRGNGETSSMPYGMVVWSTG 332 (583)
Q Consensus 280 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D~vI~a~G 332 (583)
+...+.+.+++.||+++.++.++++. ++. +...+..+|+...+.++.||+|+|
T Consensus 138 i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 138 LLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 34445555666789999999998874 333 333343456655789999999999
No 495
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.36 E-value=1.3 Score=49.98 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCCEEEeCCeEEEEe--CC-e---EEEEEcCCCeeEEeecceEEEccCC
Q 007975 291 DGIDVKLGSMVVKVT--DK-E---IFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 291 ~GV~v~~~~~V~~v~--~~-~---v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
.||+++.++.++++. ++ . |.+.+..+|+...+.++.||+|+|-
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 489999999999873 32 3 3333333566556899999999984
No 496
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.26 E-value=0.12 Score=48.56 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=27.9
Q ss_pred eEEEECCcHHHHHHHHhcCCCCCeEEEEcCCC
Q 007975 60 KVVVLGTGWAGTSFLKNLNNPSYDVQVISPRN 91 (583)
Q Consensus 60 ~VVIIGgG~aGl~aA~~L~~~g~~Vtlie~~~ 91 (583)
+|.|||+|.-|...|..++..|++|+|+|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 68999999999999999998999999999874
No 497
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.24 E-value=0.17 Score=55.16 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=33.7
Q ss_pred ccceEEEEcCChhHHHHHHHHHHhhhHhHhhhcCCCCCCceEEEEecCCccc
Q 007975 222 RILHFVIVGGGPTGVEFAAELHDFVDEDLFKLYPKVKDSVKITLLEAADHIL 273 (583)
Q Consensus 222 ~~~~vvVVGgG~tgvE~A~~l~~~~~~~~~~~~p~~~~~~~Vtlv~~~~~il 273 (583)
+.++|+|||+|.+|+-+|..|.++ +.+|+++|+.+++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~--------------G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF--------------GFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--------------CCceEEEeccCCcC
Confidence 456999999999999999999997 57899999998874
No 498
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=92.15 E-value=0.81 Score=46.05 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCEEEeCCeEEEEeCC-----eEEEEEcCCCeeEEeecceEEEccCC
Q 007975 292 GIDVKLGSMVVKVTDK-----EIFTKVRGNGETSSMPYGMVVWSTGI 333 (583)
Q Consensus 292 GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~ 333 (583)
-+++.++++|+.|.++ +|++.+ .+|+...+.+|.||+|+|-
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceEEecCC
Confidence 4789999999999753 366665 4576667889999999983
No 499
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.14 E-value=1.8 Score=48.57 Aligned_cols=51 Identities=18% Similarity=0.063 Sum_probs=33.7
Q ss_pred HHHHHHh-CCCEEEeCCeEEEEe--CCeE---EEEEcCCCeeEEeecceEEEccCCC
Q 007975 284 AEEKFSR-DGIDVKLGSMVVKVT--DKEI---FTKVRGNGETSSMPYGMVVWSTGIA 334 (583)
Q Consensus 284 ~~~~L~~-~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~~ 334 (583)
+.+.+.+ .||+++.++.++++. ++.+ ...+..+|+...+.++.||+|+|-.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3444444 588888888888873 3333 2333345665568999999999943
No 500
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.10 E-value=0.19 Score=50.06 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcCCCC-CeEEEEcCCC
Q 007975 57 KKKKVVVLGTGWAGTSFLKNLNNPS-YDVQVISPRN 91 (583)
Q Consensus 57 ~~~~VVIIGgG~aGl~aA~~L~~~g-~~Vtlie~~~ 91 (583)
...+|+|||+|-.|..+|..|++.| -+++|||...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3579999999999999999999999 5799999763
Done!