Query 007976
Match_columns 582
No_of_seqs 270 out of 1529
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11031 guanosine pentaphosph 100.0 3E-103 7E-108 860.2 58.5 489 11-560 4-494 (496)
2 PRK10854 exopolyphosphatase; P 100.0 5E-103 1E-107 863.0 58.4 496 13-566 11-510 (513)
3 COG0248 GppA Exopolyphosphatas 100.0 1E-92 2.2E-97 764.1 42.8 447 13-504 3-452 (492)
4 TIGR03706 exo_poly_only exopol 100.0 1.2E-62 2.7E-67 508.7 34.4 296 14-329 1-299 (300)
5 PF02541 Ppx-GppA: Ppx/GppA ph 100.0 5.5E-56 1.2E-60 456.5 29.0 282 28-331 1-284 (285)
6 PRK15080 ethanolamine utilizat 99.7 6E-15 1.3E-19 150.4 20.2 155 4-182 15-174 (267)
7 PF01150 GDA1_CD39: GDA1/CD39 98.9 1.6E-08 3.6E-13 110.3 13.2 149 13-162 8-183 (434)
8 TIGR02529 EutJ ethanolamine ut 98.7 1.1E-06 2.3E-11 88.4 19.2 147 18-184 2-149 (239)
9 KOG1386 Nucleoside phosphatase 98.4 1.2E-06 2.5E-11 93.5 11.2 159 13-174 9-198 (501)
10 PRK09472 ftsA cell division pr 98.4 9.1E-06 2E-10 88.4 18.2 41 143-183 204-244 (420)
11 KOG1385 Nucleoside phosphatase 98.4 1.1E-06 2.4E-11 91.8 9.0 146 13-161 67-231 (453)
12 PF01966 HD: HD domain; Inter 98.2 1.9E-07 4.2E-12 82.2 -0.5 106 361-496 3-121 (122)
13 TIGR01175 pilM type IV pilus a 98.1 0.0014 3.1E-08 69.3 25.1 163 12-182 2-227 (348)
14 TIGR01174 ftsA cell division p 98.1 0.00013 2.9E-09 78.0 17.0 40 143-182 196-235 (371)
15 COG0849 ftsA Cell division ATP 98.0 0.00028 6.1E-09 75.9 17.4 40 144-183 204-243 (418)
16 smart00471 HDc Metal dependent 97.7 8.1E-05 1.8E-09 64.7 7.2 101 361-499 7-117 (124)
17 cd00077 HDc Metal dependent ph 97.7 8.3E-05 1.8E-09 66.1 7.1 112 361-499 5-127 (145)
18 PF06723 MreB_Mbl: MreB/Mbl pr 97.5 0.0025 5.5E-08 66.8 15.4 154 16-181 4-183 (326)
19 PRK10719 eutA reactivating fac 97.5 0.0012 2.5E-08 71.4 12.8 153 15-181 8-184 (475)
20 TIGR00295 conserved hypothetic 97.4 0.00095 2.1E-08 63.1 9.1 121 349-496 3-125 (164)
21 PF11104 PilM_2: Type IV pilus 97.1 0.008 1.7E-07 63.6 14.0 40 144-183 181-220 (340)
22 PRK13928 rod shape-determining 97.1 0.014 3E-07 61.7 15.3 155 16-182 6-186 (336)
23 TIGR03401 cyanamide_fam HD dom 96.9 0.0087 1.9E-07 59.6 11.6 114 346-496 43-165 (228)
24 PF06277 EutA: Ethanolamine ut 96.9 0.029 6.3E-07 60.9 15.5 151 15-175 5-175 (473)
25 PRK13929 rod-share determining 96.8 0.027 5.8E-07 59.5 15.1 118 56-182 67-189 (335)
26 PRK13930 rod shape-determining 96.8 0.035 7.5E-07 58.4 15.8 89 90-182 102-191 (335)
27 COG4972 PilM Tfp pilus assembl 96.7 0.1 2.2E-06 53.9 17.6 72 112-183 159-233 (354)
28 TIGR00241 CoA_E_activ CoA-subs 96.6 0.018 4E-07 58.1 11.1 129 15-183 2-134 (248)
29 TIGR00904 mreB cell shape dete 96.6 0.044 9.6E-07 57.7 14.2 89 90-182 100-189 (333)
30 PRK12703 tRNA 2'-O-methylase; 96.3 0.017 3.8E-07 60.5 9.3 122 346-499 174-297 (339)
31 PRK13927 rod shape-determining 96.3 0.081 1.8E-06 55.7 14.4 89 91-183 99-188 (334)
32 TIGR00277 HDIG uncharacterized 96.2 0.018 3.9E-07 46.5 7.2 53 361-431 7-64 (80)
33 TIGR03319 YmdA_YtgF conserved 96.2 0.02 4.3E-07 63.9 9.5 93 361-501 332-427 (514)
34 COG4820 EutJ Ethanolamine util 96.1 0.021 4.5E-07 54.8 7.6 143 12-179 28-176 (277)
35 PRK12705 hypothetical protein; 96.1 0.031 6.8E-07 61.8 10.0 93 361-501 326-421 (508)
36 PRK07152 nadD putative nicotin 96.0 0.014 3E-07 62.0 6.5 93 361-499 199-311 (342)
37 PRK12704 phosphodiesterase; Pr 95.9 0.037 7.9E-07 61.8 10.1 92 361-500 338-432 (520)
38 smart00268 ACTIN Actin. ACTIN 95.8 0.083 1.8E-06 56.5 12.0 93 82-183 89-185 (373)
39 COG3294 HD supefamily hydrolas 95.8 0.013 2.7E-07 57.1 4.7 70 357-429 56-127 (269)
40 TIGR01596 cas3_HD CRISPR-assoc 95.5 0.023 5E-07 53.7 5.7 85 361-464 3-106 (177)
41 TIGR00488 putative HD superfam 95.4 0.069 1.5E-06 50.1 8.1 37 361-415 11-47 (158)
42 cd00012 ACTIN Actin; An ubiqui 95.3 0.31 6.7E-06 52.1 14.0 92 83-183 90-185 (371)
43 PRK00106 hypothetical protein; 95.3 0.088 1.9E-06 58.7 9.8 93 361-501 353-448 (535)
44 PRK10119 putative hydrolase; P 95.2 0.077 1.7E-06 52.9 8.4 101 359-486 26-134 (231)
45 PRK00227 glnD PII uridylyl-tra 95.1 0.024 5.1E-07 65.2 5.0 55 399-460 402-456 (693)
46 PTZ00280 Actin-related protein 95.0 0.39 8.4E-06 52.3 13.9 100 83-182 97-201 (414)
47 PRK03381 PII uridylyl-transfer 95.0 0.027 5.8E-07 66.1 4.9 54 400-460 443-496 (774)
48 PF08841 DDR: Diol dehydratase 95.0 0.077 1.7E-06 53.6 7.4 87 91-181 83-171 (332)
49 COG1077 MreB Actin-like ATPase 95.0 0.19 4.2E-06 51.9 10.4 112 57-180 72-190 (342)
50 PTZ00004 actin-2; Provisional 94.8 0.47 1E-05 51.0 13.6 154 15-182 8-190 (378)
51 COG4819 EutA Ethanolamine util 94.5 0.44 9.6E-06 49.3 11.5 155 15-176 7-178 (473)
52 COG3437 Response regulator con 94.3 0.15 3.3E-06 53.3 8.0 114 360-495 187-307 (360)
53 COG1078 HD superfamily phospho 94.2 0.077 1.7E-06 57.6 5.8 67 361-443 54-120 (421)
54 PTZ00466 actin-like protein; P 94.1 0.93 2E-05 48.8 14.0 162 7-182 6-195 (380)
55 PTZ00452 actin; Provisional 94.0 0.98 2.1E-05 48.5 14.0 94 81-182 93-189 (375)
56 TIGR02692 tRNA_CCA_actino tRNA 94.0 0.063 1.4E-06 59.4 4.9 55 400-460 280-344 (466)
57 PRK05007 PII uridylyl-transfer 94.0 0.07 1.5E-06 63.6 5.5 56 399-461 498-553 (884)
58 COG5371 Golgi nucleoside dipho 94.0 0.073 1.6E-06 57.0 4.9 143 13-161 120-285 (549)
59 PRK00275 glnD PII uridylyl-tra 93.9 0.059 1.3E-06 64.2 4.7 53 399-458 497-549 (895)
60 PRK04374 PII uridylyl-transfer 93.8 0.072 1.6E-06 63.2 5.1 54 400-460 487-540 (869)
61 PRK01759 glnD PII uridylyl-tra 93.6 0.088 1.9E-06 62.5 5.3 55 399-460 473-527 (854)
62 PRK03059 PII uridylyl-transfer 93.4 0.1 2.2E-06 61.9 5.5 55 399-460 477-531 (856)
63 PF00370 FGGY_N: FGGY family o 93.4 0.43 9.3E-06 47.8 9.3 80 14-99 1-80 (245)
64 TIGR03192 benz_CoA_bzdQ benzoy 92.9 1.6 3.5E-05 45.1 12.5 115 14-166 33-149 (293)
65 smart00842 FtsA Cell division 92.8 0.48 1E-05 45.6 8.3 58 15-78 1-58 (187)
66 PRK05092 PII uridylyl-transfer 92.8 0.15 3.3E-06 61.2 5.8 54 399-459 530-583 (931)
67 PRK13917 plasmid segregation p 92.2 0.32 6.9E-06 51.7 6.7 40 142-181 184-225 (344)
68 TIGR01693 UTase_glnD [Protein- 92.2 0.19 4.1E-06 59.8 5.6 55 399-460 465-519 (850)
69 PRK10885 cca multifunctional t 92.1 0.23 4.9E-06 54.0 5.5 55 400-460 246-307 (409)
70 PF00022 Actin: Actin; InterP 91.5 3.5 7.6E-05 44.2 14.0 92 82-182 88-183 (393)
71 COG1418 Predicted HD superfami 91.3 0.24 5.2E-06 49.2 4.4 54 360-431 38-94 (222)
72 PTZ00281 actin; Provisional 91.1 0.87 1.9E-05 48.9 8.8 94 81-182 94-190 (376)
73 TIGR02261 benz_CoA_red_D benzo 91.1 1.2 2.7E-05 45.2 9.2 118 14-166 2-121 (262)
74 TIGR02621 cas3_GSU0051 CRISPR- 90.8 1.4 3E-05 51.9 10.4 84 361-465 678-790 (844)
75 TIGR03276 Phn-HD phosphonate d 90.7 0.82 1.8E-05 43.7 7.1 29 402-430 46-85 (179)
76 TIGR03286 methan_mark_15 putat 89.8 1.4 2.9E-05 47.5 8.6 120 13-166 144-264 (404)
77 TIGR03739 PRTRC_D PRTRC system 89.6 0.63 1.4E-05 48.8 6.0 66 117-182 141-208 (320)
78 PF14574 DUF4445: Domain of un 89.4 3.3 7.1E-05 45.0 11.2 157 16-176 4-196 (412)
79 COG2206 c-di-GMP phosphodieste 88.9 0.45 9.8E-06 50.5 4.3 108 361-501 151-276 (344)
80 COG1940 NagC Transcriptional r 88.6 9.3 0.0002 39.6 13.9 144 13-174 6-163 (314)
81 COG1713 Predicted HD superfami 88.2 0.87 1.9E-05 43.7 5.2 93 361-499 20-134 (187)
82 CHL00094 dnaK heat shock prote 87.7 5.9 0.00013 45.6 12.6 70 107-180 154-229 (621)
83 TIGR01991 HscA Fe-S protein as 87.4 7.6 0.00016 44.5 13.2 115 59-182 103-225 (599)
84 PRK13298 tRNA CCA-pyrophosphor 87.3 0.93 2E-05 49.2 5.4 55 400-460 247-310 (417)
85 COG2844 GlnD UTP:GlnB (protein 87.2 0.48 1.1E-05 54.5 3.3 55 398-459 482-536 (867)
86 PF14450 FtsA: Cell division p 86.9 0.71 1.5E-05 41.1 3.6 27 15-41 1-27 (120)
87 PF00480 ROK: ROK family; Int 86.1 12 0.00025 35.2 11.9 129 17-168 1-142 (179)
88 PRK00290 dnaK molecular chaper 85.8 5.1 0.00011 46.1 10.8 87 69-162 115-204 (627)
89 PRK11678 putative chaperone; P 85.4 9.2 0.0002 42.2 12.1 86 70-161 132-227 (450)
90 PTZ00186 heat shock 70 kDa pre 85.2 9.5 0.00021 44.2 12.6 98 60-165 135-236 (657)
91 PF00012 HSP70: Hsp70 protein; 84.5 6.8 0.00015 44.6 11.0 73 106-181 153-231 (602)
92 PRK05183 hscA chaperone protei 84.3 10 0.00022 43.6 12.3 113 59-180 123-243 (616)
93 PRK13321 pantothenate kinase; 84.2 22 0.00048 35.9 13.5 130 15-166 2-147 (256)
94 PRK10939 autoinducer-2 (AI-2) 84.1 3.2 6.9E-05 46.6 8.0 78 14-98 4-84 (520)
95 PRK13410 molecular chaperone D 83.8 12 0.00025 43.6 12.5 95 59-161 109-205 (668)
96 TIGR02350 prok_dnaK chaperone 83.8 7.2 0.00016 44.6 10.8 87 69-161 112-201 (595)
97 PRK13318 pantothenate kinase; 83.0 14 0.0003 37.4 11.5 128 15-166 2-147 (258)
98 PTZ00400 DnaK-type molecular c 82.3 11 0.00023 43.9 11.4 106 68-180 155-268 (663)
99 TIGR01353 dGTP_triPase deoxygu 81.8 1.7 3.7E-05 46.8 4.4 63 361-430 41-120 (381)
100 PF01869 BcrAD_BadFG: BadF/Bad 81.8 26 0.00056 35.5 13.0 126 17-167 2-130 (271)
101 KOG2517 Ribulose kinase and re 81.4 5.3 0.00011 44.4 8.1 85 12-99 5-90 (516)
102 PLN03184 chloroplast Hsp70; Pr 81.2 14 0.0003 43.0 11.9 70 107-180 191-266 (673)
103 PF14450 FtsA: Cell division p 81.1 3.1 6.7E-05 36.9 5.2 32 145-176 1-32 (120)
104 TIGR02628 fuculo_kin_coli L-fu 80.9 6.7 0.00014 43.4 8.9 77 14-99 2-81 (465)
105 smart00732 YqgFc Likely ribonu 80.5 6.5 0.00014 33.0 6.8 84 15-122 3-91 (99)
106 PRK01286 deoxyguanosinetriphos 79.7 1.9 4.1E-05 45.5 3.9 36 361-414 65-100 (336)
107 PRK00047 glpK glycerol kinase; 79.7 5.2 0.00011 44.6 7.6 77 13-98 5-84 (498)
108 PRK01433 hscA chaperone protei 79.4 10 0.00022 43.4 9.9 88 68-161 122-211 (595)
109 TIGR00744 ROK_glcA_fam ROK fam 78.7 50 0.0011 34.1 14.2 132 17-167 2-147 (318)
110 COG1924 Activator of 2-hydroxy 78.4 13 0.00028 39.6 9.4 136 11-183 133-272 (396)
111 TIGR01234 L-ribulokinase L-rib 78.4 7.5 0.00016 43.8 8.4 79 14-98 2-92 (536)
112 PRK13480 3'-5' exoribonuclease 78.4 2 4.4E-05 44.9 3.6 41 361-418 162-202 (314)
113 PTZ00009 heat shock 70 kDa pro 78.2 25 0.00055 40.7 12.8 89 69-161 122-212 (653)
114 COG0554 GlpK Glycerol kinase [ 77.5 6 0.00013 43.3 6.8 102 12-119 4-134 (499)
115 COG0443 DnaK Molecular chapero 77.0 16 0.00034 41.8 10.4 96 59-161 94-190 (579)
116 COG1070 XylB Sugar (pentulose 76.5 10 0.00022 42.4 8.7 78 12-97 3-83 (502)
117 PF06406 StbA: StbA protein; 76.3 5.3 0.00011 41.9 6.1 99 81-183 88-207 (318)
118 TIGR01311 glycerol_kin glycero 75.9 7.4 0.00016 43.3 7.4 76 14-98 2-80 (493)
119 PRK13411 molecular chaperone D 75.6 23 0.00049 41.1 11.4 94 60-161 108-204 (653)
120 PRK05318 deoxyguanosinetriphos 75.1 3.6 7.9E-05 45.0 4.5 83 361-458 61-163 (432)
121 PRK04123 ribulokinase; Provisi 74.6 14 0.0003 41.8 9.3 80 14-99 4-90 (548)
122 PRK01096 deoxyguanosinetriphos 74.5 3.4 7.3E-05 45.4 4.1 50 361-413 64-113 (440)
123 TIGR03123 one_C_unchar_1 proba 73.5 76 0.0016 33.4 13.6 139 17-174 2-159 (318)
124 TIGR00555 panK_eukar pantothen 73.4 1.2E+02 0.0025 31.4 17.3 132 16-181 3-138 (279)
125 PRK10331 L-fuculokinase; Provi 73.2 20 0.00043 39.7 9.9 78 13-99 2-82 (470)
126 PTZ00294 glycerol kinase-like 72.8 14 0.00031 41.2 8.7 77 14-99 3-84 (504)
127 KOG2681 Metal-dependent phosph 72.5 4.8 0.00011 43.3 4.5 69 361-443 76-148 (498)
128 PRK09698 D-allose kinase; Prov 72.5 1E+02 0.0023 31.5 14.6 136 13-168 4-154 (302)
129 KOG0100 Molecular chaperones G 71.6 44 0.00095 36.0 11.1 96 56-165 143-249 (663)
130 PRK04926 dgt deoxyguanosinetri 70.1 5.9 0.00013 44.1 4.7 50 361-413 68-121 (503)
131 TIGR01315 5C_CHO_kinase FGGY-f 68.7 23 0.0005 40.0 9.3 73 15-96 2-77 (541)
132 PRK03007 deoxyguanosinetriphos 68.4 5.4 0.00012 43.6 3.9 54 361-432 73-142 (428)
133 TIGR03760 ICE_TraI_Pfluor inte 67.8 6.3 0.00014 39.1 4.0 19 397-415 103-121 (218)
134 PF01968 Hydantoinase_A: Hydan 66.9 7 0.00015 40.4 4.3 32 142-173 76-107 (290)
135 COG2971 Predicted N-acetylgluc 66.2 49 0.0011 34.3 10.1 128 12-166 4-139 (301)
136 PLN02295 glycerol kinase 65.7 19 0.00041 40.3 7.8 76 15-99 2-84 (512)
137 COG4341 Predicted HD phosphohy 64.4 3.3 7.2E-05 38.6 1.1 21 401-421 50-70 (186)
138 TIGR01312 XylB D-xylulose kina 61.6 19 0.00042 39.6 6.9 72 17-97 2-76 (481)
139 PRK13311 N-acetyl-D-glucosamin 60.3 1.1E+02 0.0024 30.6 11.6 133 15-167 2-146 (256)
140 PRK13317 pantothenate kinase; 59.7 2.1E+02 0.0046 29.3 14.9 63 114-180 67-132 (277)
141 TIGR01314 gntK_FGGY gluconate 58.2 34 0.00074 38.2 8.1 74 15-98 2-78 (505)
142 PRK15027 xylulokinase; Provisi 57.7 37 0.0008 37.7 8.2 76 15-99 2-78 (484)
143 PRK09557 fructokinase; Reviewe 55.1 1.1E+02 0.0024 31.4 10.8 132 15-168 2-147 (301)
144 COG1069 AraB Ribulose kinase [ 54.5 43 0.00094 37.4 7.7 76 13-94 3-79 (544)
145 PRK13310 N-acetyl-D-glucosamin 52.1 1.7E+02 0.0036 30.1 11.6 132 15-168 2-147 (303)
146 cd08190 HOT Hydroxyacid-oxoaci 48.9 27 0.00058 38.1 5.2 78 71-155 10-92 (414)
147 TIGR01175 pilM type IV pilus a 48.8 1.4E+02 0.0031 31.1 10.7 34 87-125 284-317 (348)
148 PRK13324 pantothenate kinase; 48.7 3.1E+02 0.0067 27.9 12.7 130 15-166 2-147 (258)
149 PRK09860 putative alcohol dehy 48.5 76 0.0016 34.2 8.6 78 71-155 18-100 (383)
150 PF11215 DUF3010: Protein of u 47.4 1.4E+02 0.003 27.4 8.5 99 14-125 2-104 (138)
151 PLN02669 xylulokinase 44.7 79 0.0017 35.9 8.3 80 12-97 7-98 (556)
152 cd08191 HHD 6-hydroxyhexanoate 43.0 48 0.001 35.7 6.0 79 71-155 10-91 (386)
153 COG0232 Dgt dGTP triphosphohyd 42.9 28 0.0006 37.8 4.0 78 361-459 71-149 (412)
154 COG3894 Uncharacterized metal- 42.8 25 0.00053 38.8 3.6 164 11-176 161-360 (614)
155 cd08188 Fe-ADH4 Iron-containin 42.7 70 0.0015 34.3 7.2 80 71-155 15-97 (377)
156 PF01890 CbiG_C: Cobalamin syn 42.4 1E+02 0.0023 27.4 7.1 53 75-130 21-73 (121)
157 PRK10854 exopolyphosphatase; P 41.5 1.2E+02 0.0026 34.0 9.0 57 14-73 138-195 (513)
158 PRK15454 ethanol dehydrogenase 41.2 91 0.002 33.7 7.8 80 71-155 36-118 (395)
159 TIGR02638 lactal_redase lactal 41.0 1E+02 0.0022 33.1 8.0 78 71-155 16-98 (379)
160 TIGR03706 exo_poly_only exopol 40.9 1.7E+02 0.0037 30.2 9.5 57 15-74 127-184 (300)
161 PF08668 HDOD: HDOD domain; I 40.8 17 0.00036 34.8 1.8 64 361-443 97-173 (196)
162 PRK10624 L-1,2-propanediol oxi 40.5 98 0.0021 33.2 7.9 78 71-155 17-99 (382)
163 TIGR02707 butyr_kinase butyrat 40.2 4.8E+02 0.011 27.7 13.6 26 142-168 173-198 (351)
164 cd08192 Fe-ADH7 Iron-containin 40.2 40 0.00087 36.0 4.8 80 71-155 11-93 (370)
165 TIGR02627 rhamnulo_kin rhamnul 40.1 48 0.001 36.5 5.5 17 17-33 2-18 (454)
166 KOG0676 Actin and related prot 39.2 1E+02 0.0022 33.1 7.5 103 63-180 79-184 (372)
167 PF00633 HHH: Helix-hairpin-he 38.8 18 0.00039 24.0 1.2 26 268-295 3-28 (30)
168 PRK07027 cobalamin biosynthesi 38.4 1.2E+02 0.0027 27.1 6.9 61 60-129 14-74 (126)
169 cd08551 Fe-ADH iron-containing 38.2 1.4E+02 0.003 31.8 8.6 78 71-155 10-92 (370)
170 cd08169 DHQ-like Dehydroquinat 38.0 1.3E+02 0.0029 31.8 8.3 81 72-156 11-96 (344)
171 COG1548 Predicted transcriptio 37.0 4.8E+02 0.01 26.8 11.3 128 14-163 4-150 (330)
172 PRK13331 pantothenate kinase; 35.2 3.2E+02 0.007 27.7 10.1 18 14-31 8-25 (251)
173 PRK12408 glucokinase; Provisio 34.5 1.4E+02 0.0031 31.4 7.8 102 8-130 10-125 (336)
174 cd08189 Fe-ADH5 Iron-containin 34.3 1.7E+02 0.0037 31.2 8.6 78 71-155 13-95 (374)
175 PRK00109 Holliday junction res 34.2 3E+02 0.0066 25.0 8.9 94 14-131 5-108 (138)
176 TIGR02259 benz_CoA_red_A benzo 33.4 72 0.0016 34.6 5.2 19 13-31 2-20 (432)
177 COG1454 EutG Alcohol dehydroge 32.6 1.6E+02 0.0035 31.7 7.8 78 71-155 16-98 (377)
178 TIGR02578 cas_TM1811_Csm1 CRIS 31.9 21 0.00045 41.3 1.1 15 403-417 2-16 (648)
179 PRK05082 N-acetylmannosamine k 31.5 4.6E+02 0.0099 26.6 10.9 129 15-167 3-145 (291)
180 cd08176 LPO Lactadehyde:propan 31.5 69 0.0015 34.3 4.9 78 71-155 15-97 (377)
181 cd08186 Fe-ADH8 Iron-containin 31.4 2.4E+02 0.0051 30.3 9.0 78 71-155 10-96 (383)
182 COG0816 Predicted endonuclease 31.4 2.3E+02 0.0049 26.1 7.5 87 14-123 3-96 (141)
183 cd07766 DHQ_Fe-ADH Dehydroquin 30.7 58 0.0013 34.0 4.2 79 71-155 10-90 (332)
184 COG0248 GppA Exopolyphosphatas 30.4 1.9E+02 0.0041 32.4 8.2 79 12-97 128-211 (492)
185 PRK13321 pantothenate kinase; 29.7 87 0.0019 31.6 5.1 29 145-173 2-30 (256)
186 PRK00292 glk glucokinase; Prov 29.6 3.5E+02 0.0076 27.9 9.8 122 12-153 1-138 (316)
187 PF13941 MutL: MutL protein 29.3 98 0.0021 34.2 5.6 54 15-76 2-56 (457)
188 COG3481 Predicted HD-superfami 28.5 60 0.0013 33.5 3.6 25 398-422 164-188 (287)
189 PRK11031 guanosine pentaphosph 28.5 1.9E+02 0.0041 32.3 7.9 57 14-73 133-190 (496)
190 PF03610 EIIA-man: PTS system 28.4 95 0.0021 27.0 4.5 51 105-155 13-71 (116)
191 cd08194 Fe-ADH6 Iron-containin 28.3 81 0.0017 33.8 4.8 80 71-155 10-92 (375)
192 PF10298 WhiA_N: WhiA N-termin 27.7 2.2E+02 0.0049 23.4 6.4 62 480-570 4-65 (86)
193 PF00233 PDEase_I: 3'5'-cyclic 26.7 99 0.0022 30.9 4.8 42 361-413 5-46 (237)
194 PRK13318 pantothenate kinase; 25.7 1.2E+02 0.0026 30.5 5.3 29 145-173 2-30 (258)
195 COG4680 Uncharacterized protei 25.6 57 0.0012 27.6 2.3 19 15-33 56-74 (98)
196 cd08185 Fe-ADH1 Iron-containin 25.4 2.4E+02 0.0053 30.1 7.8 76 72-155 14-95 (380)
197 PHA02902 putative IMV membrane 25.1 1.5E+02 0.0033 23.3 4.3 39 446-484 16-65 (70)
198 cd08193 HVD 5-hydroxyvalerate 23.7 3.3E+02 0.0071 29.1 8.4 80 71-155 13-95 (376)
199 PF11713 Peptidase_C80: Peptid 23.3 1.5E+02 0.0032 27.8 4.9 91 28-120 33-139 (157)
200 cd08550 GlyDH-like Glycerol_de 22.6 1.7E+02 0.0037 30.9 5.9 78 71-155 10-89 (349)
201 cd08549 G1PDH_related Glycerol 22.5 1.7E+02 0.0036 30.8 5.7 77 74-155 13-92 (332)
202 PF00370 FGGY_N: FGGY family o 22.3 1.5E+02 0.0032 29.3 5.1 30 145-174 2-32 (245)
203 COG0145 HyuA N-methylhydantoin 22.1 1E+02 0.0022 35.9 4.3 31 144-174 279-309 (674)
204 KOG0679 Actin-related protein 22.1 86 0.0019 33.6 3.4 90 82-179 100-192 (426)
205 cd08181 PPD-like 1,3-propanedi 21.9 1.4E+02 0.003 31.8 5.0 78 72-155 14-95 (357)
206 PF06116 RinB: Transcriptional 21.7 35 0.00075 25.7 0.3 24 552-575 20-43 (53)
207 PF00349 Hexokinase_1: Hexokin 21.5 3.1E+02 0.0067 26.8 7.0 59 14-77 64-122 (206)
208 cd08197 DOIS 2-deoxy-scyllo-in 21.1 4.1E+02 0.0088 28.3 8.4 80 72-156 11-97 (355)
209 cd08175 G1PDH Glycerol-1-phosp 20.4 1.4E+02 0.003 31.5 4.7 78 72-155 11-92 (348)
210 PF11762 Arabinose_Iso_C: L-ar 20.3 1.3E+02 0.0029 26.6 3.6 19 14-33 32-50 (115)
211 PF07514 TraI_2: Putative heli 20.1 97 0.0021 32.7 3.4 19 395-413 100-118 (327)
No 1
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=100.00 E-value=3.3e-103 Score=860.19 Aligned_cols=489 Identities=28% Similarity=0.377 Sum_probs=437.6
Q ss_pred CCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 11 ~~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
+.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ +|+
T Consensus 4 ~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~--~i~ 80 (496)
T PRK11031 4 SSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS--QIR 80 (496)
T ss_pred CCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEE
Confidence 457899999999999999999864 78999999999999999999999999999999999999999999999995 799
Q ss_pred EEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEE
Q 007976 91 AVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCES 170 (582)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~S 170 (582)
+|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+++|
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl~~~~~~~~~~~~S 159 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTELVTGTGAQATSLFS 159 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeEEEecCCceeeeeE
Confidence 99999999999999999999999999999999999999999999999874 34589999999999999999999999999
Q ss_pred EechHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhhcchhHHHHhcCCcEEEeecHHHHHHHHHHHcCCCcccccCCCCC
Q 007976 171 VNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDF 249 (582)
Q Consensus 171 lplG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~r~la~~~~~~y~~~~~~~~~~~ 249 (582)
+|+|+|||+++|+.++ +++.+..++.+|+++.+.+. .++++..++..+||+|||+++++++.... .
T Consensus 160 l~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~lig~gGt~~~la~~~~~~-~---------- 226 (496)
T PRK11031 160 LSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRPV--ADELREHGWQVCVGASGTVQALQEIMMAQ-G---------- 226 (496)
T ss_pred EeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH--HHHHhhcCCCEEEEEChHHHHHHHHHHhc-C----------
Confidence 9999999999998865 57777888899999999743 44555556667999999999999875321 1
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 007976 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (582)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (582)
.+ ..++.++++++++++..++.+ ++++++||+++|+|+|+||++|+.++|+.+++++|+||++|||||++++++
T Consensus 227 ---~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~~~~ 300 (496)
T PRK11031 227 ---MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVYGML 300 (496)
T ss_pred ---CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHHHHH
Confidence 01 248999999999999999987 899999999999999999999999999999999999999999999999998
Q ss_pred hccccCCCCcchhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHh
Q 007976 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (582)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LH 409 (582)
.+. ...|++..|+.+++.||++|. .|+++|+++|++|||+|++.|++ +++++.||++||+||
T Consensus 301 ~~~-----~~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~l-----------~~~~~~LL~~Aa~Lh 362 (496)
T PRK11031 301 HLP-----VEQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWHL-----------EPRSRELLISACQLH 362 (496)
T ss_pred hhh-----cccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcCC-----------ChHHHHHHHHHHHHH
Confidence 752 134778889999999999987 89999999999999999999975 446789999999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHH
Q 007976 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVR 489 (582)
Q Consensus 410 dIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLR 489 (582)
|||++||+++||+||||||+|++ ++||||+|+. ++|+++|||||+.|+..++.+..|+++ .+.+|++|||
T Consensus 363 diG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~------~iA~i~~~h~k~~~~~~~~~~~~l~~~---~v~~L~~iLR 432 (496)
T PRK11031 363 EIGLSVDFKQAPQHAAYLVRNLD-LPGFTPAQKK------LLATLLLNQTNPVDLSSLHQQNALPPR---VAERLCRLLR 432 (496)
T ss_pred hcCCccCCCccchHHHHHHhcCC-CCCCCHHHHH------HHHHHHHHhcCCCchhhhhhhhccCHH---HHHHHHHHHH
Confidence 99999999999999999999999 9999999999 999999999999877666777778766 4999999999
Q ss_pred HHHHhc-cccCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCceEEEE
Q 007976 490 LSVILQ-QNDCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVV 560 (582)
Q Consensus 490 lA~~Ld-~s~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~ 560 (582)
||++|| +++.++++++++.+++++++|++... |... .++..+++++++++|+++ |.++.+.
T Consensus 433 LA~~Ld~~~~~~~i~~~~~~~~~~~l~l~~~~~------~~~~---~~l~~~~l~~e~~~~~~~-~~~l~~~ 494 (496)
T PRK11031 433 LAIIFASRRRDDLLPEVTLQANDELLTLTLPQG------WLAQ---HPLGAEELEQESQWQSYV-HWPLEVE 494 (496)
T ss_pred HHHHhccccCCCCCCceEEEEeCCEEEEEEChh------hhhh---CcchHHHHHHHHHHHHhC-CceEEEe
Confidence 999999 45678999999988877888887654 3333 334579999999999999 8888764
No 2
>PRK10854 exopolyphosphatase; Provisional
Probab=100.00 E-value=4.6e-103 Score=862.97 Aligned_cols=496 Identities=25% Similarity=0.385 Sum_probs=438.2
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (582)
+.+|+|||||||+||+|+++. ++.++++++.|++||||+|++.+|.|++++|+|+++||++|+++|++|+|+ ++++|
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~-~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~--~v~~v 87 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPA--NVCIV 87 (513)
T ss_pred CEEEEEEeccchheEEEEEec-CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEE
Confidence 579999999999999999986 578999999999999999999999999999999999999999999999995 79999
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEe
Q 007976 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (582)
Q Consensus 93 ATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (582)
||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++. .++++++||||||||+++++++++.+..|+|
T Consensus 88 ATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~-~~~~lvvDIGGGStEl~~~~~~~~~~~~S~~ 166 (513)
T PRK10854 88 GTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE-KGRKLVIDIGGGSTELVIGENFEPILVESRR 166 (513)
T ss_pred ehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCC-CCCeEEEEeCCCeEEEEEecCCCeeEeEEEe
Confidence 999999999999999999999999999999999999999999999874 3568999999999999999999999999999
Q ss_pred chHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhhcchhHHHHhcCCcEEEeecHHHHHHHHHHHcCCCcccccCCCCCCC
Q 007976 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGG 251 (582)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~r~la~~~~~~y~~~~~~~~~~~~~ 251 (582)
+|+||++++|+.++ +++.+..++.+++.+.+...+|. .+..++..+||+|||+++++++....
T Consensus 167 lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~lig~gGT~r~la~i~~~~-------------- 230 (513)
T PRK10854 167 MGCVSFAQLYFPGGVISKENFQRARLAAAQKLETLAWQ--YRIQGWNVALGASGTIKAAHEVLVEM-------------- 230 (513)
T ss_pred cceeeHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCCEEEEechHHHHHHHHHHhC--------------
Confidence 99999999998764 56777888899999998754331 22234557999999999999976321
Q ss_pred CccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhc
Q 007976 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (582)
Q Consensus 252 ~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l~~ 331 (582)
..+.+.|+.++|+++++++.+++.+ ++.+++||+++|+|+|+||++|+.++|+.+++++|+||+.|||||++++++.+
T Consensus 231 ~~~~~~i~~~~l~~l~~~l~~~~~~--~r~~~~gl~~~Rad~I~~g~~il~~i~~~~~~~~i~vs~~gLReGll~~~~~~ 308 (513)
T PRK10854 231 GEKDGLITPERLEMLVKEVLKHKNF--AALSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGALREGVLYEMEGR 308 (513)
T ss_pred CCCCCccCHHHHHHHHHHHHCCCHH--HHHhCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhh
Confidence 0123479999999999999999987 99999999999999999999999999999999999999999999999998754
Q ss_pred cccCCCCcchhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhccc-ccchhhhhhccCCcchHHHHHHHHHHhh
Q 007976 332 VFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDK-LYNNQVKLIASFEDKDLEYLEAACLLHN 410 (582)
Q Consensus 332 ~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~L~~~~~-l~~~~~~~~~~~~~~~~~LL~~Aa~LHd 410 (582)
. ...|++.+|++++++||++|. .|+++|+++|++|||+|++.|+ + +++++++||++||+|||
T Consensus 309 ~-----~~~d~~~~s~~~la~ry~~d~--~ha~~V~~~a~~LFd~l~~~h~~~----------~~~~~~~LL~~Aa~Lhd 371 (513)
T PRK10854 309 F-----RHQDIRSRTAKSLANHYNIDR--EQARRVLETTMQLYEQWREQNPKL----------AHPQLEALLKWAAMLHE 371 (513)
T ss_pred c-----ccccHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhhhhhhccc----------CCHHHHHHHHHHHHHHh
Confidence 2 124788999999999999987 8999999999999999999984 2 24577899999999999
Q ss_pred cccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHH
Q 007976 411 IGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRL 490 (582)
Q Consensus 411 IG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRl 490 (582)
||++||+++||+||||||+|++ ++||||+|+. ++|+++|||||+.|+..++.+..|+ ++.+.+|++||||
T Consensus 372 iG~~I~~~~~~~Hs~yiI~~s~-l~G~s~~E~~------~iA~i~ryh~k~~p~~~~~~~~~l~---~~~~~~l~~iLRL 441 (513)
T PRK10854 372 VGLNINHSGLHRHSAYILQNTD-LPGFNQEQQL------MLATLVRYHRKAIKLDDLPRFTLFK---KKQYLPLIQLLRL 441 (513)
T ss_pred cCCccCCCCcchhHHHHHhcCC-CCCCCHHHHH------HHHHHHHHhcCCCChhhhhhhhccc---HHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999 9999999999999987777888887 3466789999999
Q ss_pred HHHhccccCCC--CcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCceEEEEeecCCC
Q 007976 491 SVILQQNDCVN--LRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLVVGSSSSS 566 (582)
Q Consensus 491 A~~Ld~s~~~~--i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i~~~~~~~ 566 (582)
|++||+++.++ +.+++++.+++.+.|++... | ..+..+| .|.+++++++|+++||.+++++-.+.|.
T Consensus 442 A~~Ld~~~~~~~~~~~v~~~~~~~~l~l~l~~~------~-~~~~~le--~~~~~~~~~~f~~vfg~~~~l~~~~~~~ 510 (513)
T PRK10854 442 GVLLNNQRQATTTPPTLRLITDDSHWTLRFPHD------W-FSQNALV--LLDLEKEQEYWEDVTGWRLKIEEESTPE 510 (513)
T ss_pred HHHhcCCCCCCCCCCeEEEEEcCCEEEEEECcc------c-cccCcHH--HHHHHHHHHHHHHHhCceEEEEecCchh
Confidence 99999777544 55677766666667777544 2 1345555 6999999999999999999999666553
No 3
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-92 Score=764.08 Aligned_cols=447 Identities=35% Similarity=0.513 Sum_probs=405.0
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (582)
+++|+||||||||||+|+++.+ |.++++++.|..||||+|++.+|.|++++|+|+++||++|+++++.++++ ++++|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~-~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~~~--~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFGAE--EVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC-CccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCCCC--EEEEe
Confidence 5799999999999999999986 88999999999999999999999999999999999999999999999985 79999
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEe
Q 007976 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVN 172 (582)
Q Consensus 93 ATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slp 172 (582)
||+|+|+|+|+++|+.+++++||++|+||||+|||||+|+||.++++. ..+++++||||||||++++++.++....|+|
T Consensus 80 ATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl~~g~~~~~~~~~Sl~ 158 (492)
T COG0248 80 ATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTELVLGDNFEIGLLISLP 158 (492)
T ss_pred hhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEEEEecCCccceeEEee
Confidence 999999999999999999999999999999999999999999999985 5679999999999999999999999999999
Q ss_pred chHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhhcchhHHHHhcCCcEEEeecHHHHHHHHHHH--cCCCcccccCCCCC
Q 007976 173 LGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVV--SGYDRDFVDNVGDF 249 (582)
Q Consensus 173 lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~r~la~~~~--~~y~~~~~~~~~~~ 249 (582)
+|||||+++|+.++ ++..+...++++++..+++.++. +....+..+||+|||+|+++++.+ ..||...
T Consensus 159 ~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~vg~sGT~r~la~l~~~~~~y~~~~------- 229 (492)
T COG0248 159 LGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKE--YRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRV------- 229 (492)
T ss_pred cceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHH--HHhhhhccEEEccHHHHHHHHHHHhcccCChhh-------
Confidence 99999999999874 68888999999999999875432 222345559999999999999864 4566544
Q ss_pred CCCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 007976 250 GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (582)
Q Consensus 250 ~~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (582)
.|+|.||.+++.++++++..++.+ ++.+.+|++++|+|+|++|++|+.++|+.+++++|+||+.|||||++++++
T Consensus 230 ---~~~~~it~~~l~~~~~~l~~~~~~--~~~~~~gl~~~Ra~vi~~G~~il~a~~~~l~~~~~~vs~~glREG~l~~~l 304 (492)
T COG0248 230 ---LHGYEITAEELEKLLERLIRMTSE--ERLKLEGLSKDRADVILAGAAILEAVFEALSIERMIVSDGGLREGVLYDLL 304 (492)
T ss_pred ---ccCceEcHHHHHHHHHHHHhCChH--hHHhccCCChhhhHhhhhHHHHHHHHHHhcCcceEEeccccccchHHHHHh
Confidence 457899999999999999999987 899999999999999999999999999999999999999999999999998
Q ss_pred hccccCCCCcchhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHh
Q 007976 330 AKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLH 409 (582)
Q Consensus 330 ~~~~~~~~~~~~~~~~s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LH 409 (582)
.+... .+++.+++.+++.+|.++. .|+.+|+++|..+|+++.+.++. ..+++.++ |+|||+||
T Consensus 305 ~~~~~-----~~~r~~~~~~~~~~~~~~~--~~~~~v~~~a~~l~~~~~~~~~~---------~~~~~~~~-l~~Aa~Lh 367 (492)
T COG0248 305 LRFEA-----EDIRKRSLLELALRYLIDL--AQAKRVAKLALELFDQLLALLKI---------DEEAEERL-LEAAAMLH 367 (492)
T ss_pred hhhhh-----hhhhccHHHHHHHHhhhhH--HhHhhHHHHHHHHHHHhhhcccc---------CCChHHHH-HHHHHHHH
Confidence 76432 2367789999999999987 89999999999999999987653 34556666 99999999
Q ss_pred hcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHH
Q 007976 410 NIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVR 489 (582)
Q Consensus 410 dIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLR 489 (582)
|||++||+++||+||+|+|+|++ ++||||+|+. ++|++++|||+..++...+.+ ++.+...+..|+++||
T Consensus 368 ~iG~~i~~~~~~~hsayiI~~s~-l~Gf~~~e~~------~lA~l~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~llr 437 (492)
T COG0248 368 EIGLNISHSGHHKHSAYIIRNSD-LPGFSHEERL------LLALLARYHRKAVKLKKLAPF---SKKKLKSVRRLLGLLR 437 (492)
T ss_pred HhccccCcccHHHHHHHHHHcCC-CCCCCHHHHH------HHHHHHHHHhcCCCccccccc---cchhHHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999 999999999998766554443 7778889999999999
Q ss_pred HHHHhccccCCCCcc
Q 007976 490 LSVILQQNDCVNLRG 504 (582)
Q Consensus 490 lA~~Ld~s~~~~i~~ 504 (582)
+|..||+.+...+..
T Consensus 438 la~~L~~~~~~~~~~ 452 (492)
T COG0248 438 LAVILDRARQGDIEP 452 (492)
T ss_pred HHHHHcccccCcCCc
Confidence 999999999877643
No 4
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=100.00 E-value=1.2e-62 Score=508.65 Aligned_cols=296 Identities=33% Similarity=0.497 Sum_probs=269.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
++|+|||||||+||+|+++. ++.++++++.+.+||||++++.+|.|++++|++++++|++|++++++|+++ ++++||
T Consensus 1 ~~AvIDiGSNsirl~I~~~~-~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i~~va 77 (300)
T TIGR03706 1 PIAAIDIGSNSVRLVIARGV-EGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EVRAVA 77 (300)
T ss_pred CeEEEEecCCeeeEEEEEec-CCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eEEEEE
Confidence 37999999999999999986 578999999999999999999999999999999999999999999999995 799999
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEec
Q 007976 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (582)
Q Consensus 94 TsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (582)
|+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+|+.+.++.. +++++||||||||+++++++++.+++|+|+
T Consensus 78 Tsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~--~~~v~DiGGGSte~~~~~~~~~~~~~Sl~l 155 (300)
T TIGR03706 78 TAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIA--DGLVVDIGGGSTELILGKDFEPGEGVSLPL 155 (300)
T ss_pred cHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCC--CcEEEEecCCeEEEEEecCCCEeEEEEEcc
Confidence 999999999999999999999999999999999999999999988643 369999999999999999999999999999
Q ss_pred hHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHhhcchhHHHHhcCCcEEEeecHHHHHHHHHHHc--CCCcccccCCCCCC
Q 007976 174 GHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS--GYDRDFVDNVGDFG 250 (582)
Q Consensus 174 G~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~liG~gGt~r~la~~~~~--~y~~~~~~~~~~~~ 250 (582)
|++||+++|...+ |++.+.+.+++|+++.+... ++++..+...+||+|||+++++++... .|+..
T Consensus 156 G~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~lig~gGt~~~la~~~~~~~~~~~~--------- 223 (300)
T TIGR03706 156 GCVRLTEQFFPDGPISKKSLKQARKAAREELASL---KWLKKGGWRPLYGVGGTWRALARIHQAQHGYPLH--------- 223 (300)
T ss_pred ceEEhHHhhCCCCCCCHHHHHHHHHHHHHHHHHh---HHHhhCCCCEEEEehHHHHHHHHHHHhcccCCCc---------
Confidence 9999999998754 57778889999999998753 334444555799999999999998643 34432
Q ss_pred CCccccccCHHHHHHHHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHH
Q 007976 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSL 329 (582)
Q Consensus 251 ~~~~~~~i~~~~l~~l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l 329 (582)
..|++.+++++|++++++|..++.+ ++.+.+|++++|+|+|+||++|+.++|+.+++++++||++|||||++++++
T Consensus 224 -~~~~~~l~~~~~~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~i~~~l~~~~~~~~i~vs~~glreGl~~~~~ 299 (300)
T TIGR03706 224 -GLHGYTITAEGLLELLEELIKLSRE--ERLKLPGLSKDRADILPGGAAVLEELFRALGIEQMVFSRGGLREGVLYELL 299 (300)
T ss_pred -CccCCEECHHHHHHHHHHHHcCCHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhhc
Confidence 3456789999999999999999988 999999999999999999999999999999999999999999999998864
No 5
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=100.00 E-value=5.5e-56 Score=456.47 Aligned_cols=282 Identities=35% Similarity=0.583 Sum_probs=247.1
Q ss_pred EEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHH
Q 007976 28 LIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFV 107 (582)
Q Consensus 28 ~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl 107 (582)
+|++++ +|.++++++.+++||||++++.+|.|++++|+|++++|++|++++++|+|+ +|+||||+|+|+|+|+++|+
T Consensus 1 ~I~~~~-~~~~~~l~~~~~~vrLg~~~~~~g~i~~e~i~r~~~~L~~f~~~~~~~~v~--~i~~vATsA~R~A~N~~~~~ 77 (285)
T PF02541_consen 1 VIAEVK-DGKFKILEEEKEIVRLGEGVFETGRISEEAIERAIDALKRFKEILKDYGVE--KIRAVATSALREAKNSDEFL 77 (285)
T ss_dssp EEEEEE-TTEEEEEEEEEEE--TTTTHHHHSSB-HHHHHHHHHHHHHHHHHHHHTTGS--EEEEEEEHHHHHSTTHHHHH
T ss_pred CEEEeC-CCCeEEeeeceEEEEcccccccCCCcCHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEhhHHHHhCcCHHHHH
Confidence 689997 567999999999999999999999999999999999999999999999994 89999999999999999999
Q ss_pred HHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhhcCCC-
Q 007976 108 ECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS- 186 (582)
Q Consensus 108 ~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~~~~- 186 (582)
++|+++||++|+||||+|||+|+|+|+.+.+ .+.++++++||||||||+++++++++.++.|+|+|++++++.|...+
T Consensus 78 ~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~~~~~~~ 156 (285)
T PF02541_consen 78 DRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELILFENGKVVFSQSLPLGAVRLTERFFKSDP 156 (285)
T ss_dssp HHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEEEEETTEEEEEEEES--HHHHHHHHSGCSS
T ss_pred HHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEEEEECCeeeEeeeeehHHHHHHHHHhccCc
Confidence 9999999999999999999999999999998 34567999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHHhhcchhHHHHhcC-CcEEEeecHHHHHHHHHHHcCCCcccccCCCCCCCCccccccCHHHHHH
Q 007976 187 GNFEEVLKMREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGGCKRDWRLSRGELKG 265 (582)
Q Consensus 187 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~liG~gGt~r~la~~~~~~y~~~~~~~~~~~~~~~~~~~i~~~~l~~ 265 (582)
++..+.+.+++|+.+.+....+. +...+ ...++|++|+.++++..... ++ ..++.|+.++|++
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~i~~~~l~~ 220 (285)
T PF02541_consen 157 PTAEELEKLREFIRKELEELKWE--FPKGGGTIRIIGTSGTIRALYPLKKI-HG-------------KEGYEITREDLEE 220 (285)
T ss_dssp -HHHHHHHHHHHHHHHHCTTHHH--HHHHCHHCEEECCCHHHHHHHHHHHH-TT-------------CSSCEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hhhcCCceeeecHHHHHHHHHHHHHh-cC-------------CCCceECHHHHHH
Confidence 45667788999999999875332 22223 56789999999998876421 11 0147999999999
Q ss_pred HHHHHHcCCCcHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhc
Q 007976 266 IVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAK 331 (582)
Q Consensus 266 l~~~l~~~~~~~~er~~~~gl~~~Radii~~g~~il~~l~~~~~~~~i~vs~~gLReGll~~~l~~ 331 (582)
+++++..++.+ ++.+.+|++++|+|+|+||++|+.++|+.+++++++||+.|||||++++++.+
T Consensus 221 ~~~~l~~~~~e--e~~~~~gl~~~Ra~~i~~g~~i~~~l~~~~~~~~i~vs~~glreG~l~~~l~~ 284 (285)
T PF02541_consen 221 LLEKLSKMSPE--ERAKIPGLSPDRADIILPGALILKALLEAFGAEEIIVSDYGLREGLLYDMLLK 284 (285)
T ss_dssp HHHHHHTSSHH--HHHTSTTSHHCHHTTHHHHHHHHHHHHHHHTHSEEEEESEEHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHccCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHhcc
Confidence 99999999988 99999999999999999999999999999999999999999999999998864
No 6
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.66 E-value=6e-15 Score=150.36 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=122.6
Q ss_pred ccccccCCCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc-
Q 007976 4 NTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH- 82 (582)
Q Consensus 4 ~~~~~~~~~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~- 82 (582)
+|+-.+-..+++++|||||||||++|++..+ +.+.+.+..+..+|+|. +.+ ++++.++|+.|++.++.+
T Consensus 15 ~~~~~~~~~~~~~~iDiGSssi~~vv~~~~~-~~~~~~~~~~~~vr~G~-i~d--------i~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 15 NKTPVATESPLKVGVDLGTANIVLAVLDEDG-QPVAGALEWADVVRDGI-VVD--------FIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred cCCCCCCCCCEEEEEEccCceEEEEEEcCCC-CEEEEEeccccccCCCE-Eee--------HHHHHHHHHHHHHHHHHHh
Confidence 4444344567899999999999999997653 35778888888999988 333 999999999999999877
Q ss_pred CCCCccEEEEEehhhhhcC---ChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 007976 83 NISRDHTRAVATAAVRAAE---NKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (582)
Q Consensus 83 ~v~~~~i~~vATsA~R~A~---N~~~fl~~I~~~tG~~i~-VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (582)
|++ +..|+| +++.+. |+..+. ++.++.|+++. ++++. .|--.++ ... ..+++|||||+|+++
T Consensus 85 g~~---i~~v~~-~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~------~~~--~~~vvDIGggtt~i~ 150 (267)
T PRK15080 85 GRE---LTHAAT-AIPPGTSEGDPRAII-NVVESAGLEVTHVLDEP-TAAAAVL------GID--NGAVVDIGGGTTGIS 150 (267)
T ss_pred CCC---cCeEEE-EeCCCCCchhHHHHH-HHHHHcCCceEEEechH-HHHHHHh------CCC--CcEEEEeCCCcEEEE
Confidence 773 566777 788877 888877 66778899999 55544 4433222 111 269999999999999
Q ss_pred EeeCCeEEEEEEEechHHHHHHhh
Q 007976 159 IGKRGKVVFCESVNLGHVSLSEKF 182 (582)
Q Consensus 159 ~~~~~~~~~~~SlplG~vrl~e~f 182 (582)
++.+|++.++.++|+|.-.+++..
T Consensus 151 v~~~g~~~~~~~~~~GG~~it~~I 174 (267)
T PRK15080 151 ILKDGKVVYSADEPTGGTHMSLVL 174 (267)
T ss_pred EEECCeEEEEecccCchHHHHHHH
Confidence 999999999999999999999865
No 7
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=98.87 E-value=1.6e-08 Score=110.33 Aligned_cols=149 Identities=25% Similarity=0.307 Sum_probs=88.8
Q ss_pred ceEEEEEecccceEEEEEEEeC--CCCEEEEEeeeee----eeeccCCCcCCCCCHHHHHHHHHHHHHHHH-HHHHcCCC
Q 007976 13 TLFASIDMGTSSFKLLIIRAYP--NGKFLTIDTLKQP----VILGRDLSSSCSISTQSQARSVESLLMFRD-IIQSHNIS 85 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~--~~~~~~l~~~k~~----vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~-~~~~~~v~ 85 (582)
.+..|||.||.+.|+-||+... .....++...+.. ....-|+..- .-+++.+...+.-|-.++. .+..-..+
T Consensus 8 ~y~vviDAGSsgsR~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~pgls~~-~~~~~~~~~~l~~ll~~a~~~ip~~~~~ 86 (434)
T PF01150_consen 8 KYGVVIDAGSSGSRVHVYKWRCRDNNSLPVVPLVEQSKPVFKKVEPGLSSF-ADNPEKAAESLQPLLDFAKSVIPKSQHS 86 (434)
T ss_dssp EEEEEEEEESSEEEEEEEEEEEEECCGCEEEEEEEEBEEHCCHHCCHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCceEEEEEEecCCCccCCccccceeccchhhcccchHHHh-CCChHHHHHHHHHHHHHHHhhCCHHHhC
Confidence 3467999999999999999864 1223333322220 1111121110 0123555555555444433 22222222
Q ss_pred CccEEEEEehhhhhc--CChHHHHHHHHHH----cCCc-----EEEeChHHHHHHHHhhhhccC---CCC------CCce
Q 007976 86 RDHTRAVATAAVRAA--ENKDEFVECVREK----VGFE-----VDVLTGEQEAKFVYMGVLQFL---PVF------DRLV 145 (582)
Q Consensus 86 ~~~i~~vATsA~R~A--~N~~~fl~~I~~~----tG~~-----i~VIsgeEEA~l~~~gv~~~l---~~~------~~~~ 145 (582)
..-|.+.||+.||.- .+++.+++.+++. +++. ++||||+||+.|.|++|-.-+ ... ....
T Consensus 87 ~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~ 166 (434)
T PF01150_consen 87 STPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTV 166 (434)
T ss_dssp HEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-E
T ss_pred CeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceE
Confidence 245899999999964 5678888888763 3443 799999999999999985432 212 2446
Q ss_pred EEEEeCCCceEEEEeeC
Q 007976 146 LSVDIGGGSTEFVIGKR 162 (582)
Q Consensus 146 lviDIGGGStEl~~~~~ 162 (582)
-++|+|||||+|+..-+
T Consensus 167 g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 167 GALDLGGASTQIAFEPS 183 (434)
T ss_dssp EEEEE-SSEEEEEEEET
T ss_pred EEEecCCcceeeeeccC
Confidence 89999999999997655
No 8
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.71 E-value=1.1e-06 Score=88.41 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=91.0
Q ss_pred EEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCccEEEEEehh
Q 007976 18 IDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQS-HNISRDHTRAVATAA 96 (582)
Q Consensus 18 IDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~-~~v~~~~i~~vATsA 96 (582)
|||||+||++++.+.. ++.+-.. .+=.+...+|.|.+ ++.+-..|+.+++.++. .+.+..+ .+++..+
T Consensus 2 ~dig~~~ik~v~~~~~-~~~~~~~-------~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~~~~~-vvisVP~ 70 (239)
T TIGR02529 2 VDLGTANIVIVVLDED-GQPVAGV-------MQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGIELTH-AATAIPP 70 (239)
T ss_pred CCcccceEEEEEEecC-CCEEEEE-------ecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCCCcCc-EEEEECC
Confidence 7999999999998765 3422111 12223344455543 33344455555544432 3443212 2344333
Q ss_pred hhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHH
Q 007976 97 VRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (582)
Q Consensus 97 ~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (582)
-=...+++.+.+. -+..|+++..+.-+-=|-..+++ + ...+++|||||+|.++++++|++.++.++|+|.-
T Consensus 71 ~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~~~----~----~~~~vvDiGggtt~i~i~~~G~i~~~~~~~~GG~ 141 (239)
T TIGR02529 71 GTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAVLQ----I----KNGAVVDVGGGTTGISILKKGKVIYSADEPTGGT 141 (239)
T ss_pred CCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHHhc----C----CCcEEEEeCCCcEEEEEEECCeEEEEEeeecchH
Confidence 3333455555554 45579998766555544333222 1 1259999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 007976 177 SLSEKFGT 184 (582)
Q Consensus 177 rl~e~f~~ 184 (582)
.+++.+..
T Consensus 142 ~it~~Ia~ 149 (239)
T TIGR02529 142 HMSLVLAG 149 (239)
T ss_pred HHHHHHHH
Confidence 99987643
No 9
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.44 E-value=1.2e-06 Score=93.55 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=100.5
Q ss_pred ceEEEEEecccceEEEEEEEeC-CCC--EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHH-H--HHcCCCC
Q 007976 13 TLFASIDMGTSSFKLLIIRAYP-NGK--FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI-I--QSHNISR 86 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~-~~~--~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~-~--~~~~v~~ 86 (582)
++=.|||-||...||-|+.... .|. +.++...-..-.++-|+..-+. .|+.....+.-|-+|++- + +.++-
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~-nP~~a~~~l~pLlefA~~~IPk~~h~~-- 85 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFAD-NPEGASVYLTPLLEFAKEHIPKEKHKE-- 85 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhcc-ChhhhHHHHHHHHHHHHhhCCHhhcCC--
Confidence 3446999999999999998764 233 2222222112234444432222 356666666666666542 1 22232
Q ss_pred ccEEEEEehhhhhc--CChHHHHHHHHHHc----CCc-----EEEeChHHHHHHHHhhhhccC---CC------CCCceE
Q 007976 87 DHTRAVATAAVRAA--ENKDEFVECVREKV----GFE-----VDVLTGEQEAKFVYMGVLQFL---PV------FDRLVL 146 (582)
Q Consensus 87 ~~i~~vATsA~R~A--~N~~~fl~~I~~~t----G~~-----i~VIsgeEEA~l~~~gv~~~l---~~------~~~~~l 146 (582)
..+++.||+.||-- .+.+.+++-+..-+ ++. ++||||.||+.|+|.++-..+ .. ..+.+-
T Consensus 86 Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G 165 (501)
T KOG1386|consen 86 TPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFGKKNRWDSRKETFG 165 (501)
T ss_pred CCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhccccCcccCCcceee
Confidence 35899999999975 56677776665433 332 789999999999999985322 11 234578
Q ss_pred EEEeCCCceEEEEeeCCe-----EEEEEEEech
Q 007976 147 SVDIGGGSTEFVIGKRGK-----VVFCESVNLG 174 (582)
Q Consensus 147 viDIGGGStEl~~~~~~~-----~~~~~SlplG 174 (582)
++|+||.||+|+..-..+ ......+.+|
T Consensus 166 ~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G 198 (501)
T KOG1386|consen 166 ALDLGGASTQITFEPPNQQEEVPKENLQTINYG 198 (501)
T ss_pred eEecCCceeEEEEecCccccccchhhhhheecC
Confidence 999999999999865422 1234556667
No 10
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.43 E-value=9.1e-06 Score=88.44 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=37.3
Q ss_pred CceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhhc
Q 007976 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (582)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (582)
...+++|||||+|+++++++|.+.++.++|+|.-.+++.+.
T Consensus 204 ~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa 244 (420)
T PRK09472 204 LGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIA 244 (420)
T ss_pred cCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHH
Confidence 35899999999999999999999999999999998887653
No 11
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=98.38 E-value=1.1e-06 Score=91.77 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=92.5
Q ss_pred ceEEEEEecccceEEEEEEEeCC--CC-EEEEEeeeeeeeeccCCCcCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPN--GK-FLTIDTLKQPVILGRDLSSSC-SISTQSQARSVESLLMFRDIIQSHNISRDH 88 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~--~~-~~~l~~~k~~vrLg~g~~~~g-~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (582)
++..+||-||.+.|+.||..+.. +. +++-++.-.++.-|-..+.+. +=..+.++.+++.-+.|.=. +....+ -
T Consensus 67 ~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~-~~~~kT--P 143 (453)
T KOG1385|consen 67 QYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPR-EHWKKT--P 143 (453)
T ss_pred EEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCH-hHhccC--c
Confidence 46689999999999999998753 22 222222223333343434332 11122333333333333210 122443 4
Q ss_pred EEEEEehhhhhc--CChHHHHHHHHHHcC---------CcEEEeChHHHHHHHHhhhhcc---CCCC-CCceEEEEeCCC
Q 007976 89 TRAVATAAVRAA--ENKDEFVECVREKVG---------FEVDVLTGEQEAKFVYMGVLQF---LPVF-DRLVLSVDIGGG 153 (582)
Q Consensus 89 i~~vATsA~R~A--~N~~~fl~~I~~~tG---------~~i~VIsgeEEA~l~~~gv~~~---l~~~-~~~~lviDIGGG 153 (582)
|.+-||+.+|-- .-++.+++.|++.+- =.|.|++|.+|+-|.|..+-.. +.-+ ....-++|+|||
T Consensus 144 i~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGG 223 (453)
T KOG1385|consen 144 IVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGG 223 (453)
T ss_pred eEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCc
Confidence 889999999974 446789999988763 2388999999999999877532 2221 345789999999
Q ss_pred ceEEEEee
Q 007976 154 STEFVIGK 161 (582)
Q Consensus 154 StEl~~~~ 161 (582)
||++++.-
T Consensus 224 STQi~f~p 231 (453)
T KOG1385|consen 224 STQITFLP 231 (453)
T ss_pred eEEEEEec
Confidence 99999865
No 12
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=98.23 E-value=1.9e-07 Score=82.19 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC-------------CchhhhHHH
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-------------GYHKQSCHI 427 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~-------------~h~kHS~yi 427 (582)
+|+..|+.+|..+++.+.. +.++.++.+||+|||||+...+. .|...|+++
T Consensus 3 ~Hs~~V~~~a~~l~~~~~~----------------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~ 66 (122)
T PF01966_consen 3 EHSLRVAELAERLADRLGL----------------EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEI 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTH----------------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC----------------chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHH
Confidence 6999999999999877653 13468999999999999999774 688899999
Q ss_pred HHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhcc
Q 007976 428 IMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 496 (582)
Q Consensus 428 I~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 496 (582)
+.+.....|+. .. .++.++++|....+...... .........++.++++|+.||.
T Consensus 67 ~~~~~~~~~~~---~~------~i~~~i~~H~~~~~~~~~~~-----~~~~~~~~~~~~iv~~aD~l~a 121 (122)
T PF01966_consen 67 LKEFLKELGLP---IE------IIANAIRYHHGPWNGEGKPK-----EEDYEPISLEARIVKLADRLDA 121 (122)
T ss_dssp HHHHHHHHCHC---HH------HHHHHHHHTTTHHTSHHCHH-----CHSCSTSSHHHHHHHHHHHHHH
T ss_pred HHHhhhhcchH---HH------HHHHHHHHhccccccccccc-----ccCCCCCCHHHHHHHHHHHHhC
Confidence 98876333444 55 88899999987654211111 1112234557889999999873
No 13
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.08 E-value=0.0014 Score=69.29 Aligned_cols=163 Identities=20% Similarity=0.270 Sum_probs=93.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE-
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR- 90 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~- 90 (582)
++.+..|||||++||++..+.. ++.++++.....++ -.+...+|.+.+ ++.+.++|++..+ ..+++..++.
T Consensus 2 ~~~~vgiDIg~~~Ik~v~~~~~-~~~~~v~~~~~~~~--p~~~i~~g~i~d--~~~~~~~l~~~~~---~~~~~~k~v~~ 73 (348)
T TIGR01175 2 KSLLVGIDIGSTSVKVAQLKRS-GDRYKLEHYAVEPL--PAGIFTEGHIVE--YQAVAEALKELLS---ELGINTKKAAT 73 (348)
T ss_pred CCcEEEEEeccCeEEEEEEEec-CCceEEEEEEEEEC--CCCcccCCCccC--HHHHHHHHHHHHH---HcCCCcceEEE
Confidence 3457899999999999988854 56687776655553 334445554432 2334445554433 2344322221
Q ss_pred EEEehh-----hhh--cCChHHHHHHH---------------------------------------------------HH
Q 007976 91 AVATAA-----VRA--AENKDEFVECV---------------------------------------------------RE 112 (582)
Q Consensus 91 ~vATsA-----~R~--A~N~~~fl~~I---------------------------------------------------~~ 112 (582)
++.++. +.- .-+.+++-+.| -+
T Consensus 74 alp~~~~~~r~~~~p~~i~~~el~~~i~~e~~~~ip~~~~e~~~D~~~~~~~~~~~~~~~~v~v~a~~~~~v~~~~~~~~ 153 (348)
T TIGR01175 74 AVPGSAVITKVIPVPAGLDERELEFAVYIEASHYIPYPIEEVSLDFEKLGLKANNPESTVQVLLAATRKEVVDSRLHALK 153 (348)
T ss_pred EecCCeeEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCHHHheeeeEEccCCCCCCCceEEEEEEEecHHHHHHHHHHHH
Confidence 111111 000 01222222222 12
Q ss_pred HcCCcEEEeChHHHHHHHHhhhhc-cCC-C-CCC-ceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhh
Q 007976 113 KVGFEVDVLTGEQEAKFVYMGVLQ-FLP-V-FDR-LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (582)
Q Consensus 113 ~tG~~i~VIsgeEEA~l~~~gv~~-~l~-~-~~~-~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (582)
..|+++..|+-+-=|....+.... .+. . ... +.+++|||+++|.++++++|++.+..++|+|.-.+++..
T Consensus 154 ~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~~i~~~i 227 (348)
T TIGR01175 154 LAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTRQLTSEL 227 (348)
T ss_pred HcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHHHHHHHH
Confidence 345555555544434333332111 111 1 122 389999999999999999999999999999999988765
No 14
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.06 E-value=0.00013 Score=78.03 Aligned_cols=40 Identities=23% Similarity=0.486 Sum_probs=36.4
Q ss_pred CceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhh
Q 007976 143 RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (582)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (582)
...+++|||||+|.++++.+|.+.+..++|+|.-.+++..
T Consensus 196 ~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i 235 (371)
T TIGR01174 196 LGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDI 235 (371)
T ss_pred CCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHH
Confidence 3579999999999999999999999999999998888754
No 15
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.00028 Score=75.94 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=37.4
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhhc
Q 007976 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (582)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (582)
...++|||||+|.++.+.+|.+.++.++|+|.-.+|+..-
T Consensus 204 Gv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa 243 (418)
T COG0849 204 GVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIA 243 (418)
T ss_pred CeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHH
Confidence 5899999999999999999999999999999999998654
No 16
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=97.74 E-value=8.1e-05 Score=64.75 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC----------CCchhhhHHHHHc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK----------KGYHKQSCHIIMN 430 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~----------~~h~kHS~yiI~n 430 (582)
.|+..|+.++..+.+++.. .++..+.+||+|||+|..... ..|..++++++.+
T Consensus 7 ~H~~~v~~~~~~l~~~~~~-----------------~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 69 (124)
T smart00471 7 EHSLRVAQLAAALAEELGL-----------------LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLE 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCh-----------------HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHh
Confidence 6999999999987766542 123578999999999999985 7899999999987
Q ss_pred CCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccC
Q 007976 431 GDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 499 (582)
Q Consensus 431 s~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 499 (582)
.++++.... +...+++||....... .. .....++.++++|+.++..+.
T Consensus 70 ----~~~~~~~~~------~~~~~i~~h~~~~~~~--------~~---~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 70 ----EEEPRILEE------ILATAILSHHERPDGL--------RG---EPITLEARIVKVADRLDALRR 117 (124)
T ss_pred ----CCCCHHHHH------HHhhHHHHhccccCCC--------CC---CcCCHHHHHHHHHHHHHHHhc
Confidence 377888888 7777888988754320 00 122347889999999887654
No 17
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=97.73 E-value=8.3e-05 Score=66.13 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhccccc-----------CCCCchhhhHHHHH
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT-----------SKKGYHKQSCHIIM 429 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I-----------~~~~h~kHS~yiI~ 429 (582)
.|+..|+.++..+++.... +..++..+.+||+|||+|... ....|.++|+.++.
T Consensus 5 ~Hs~~v~~~~~~~~~~~~~---------------~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~ 69 (145)
T cd00077 5 EHSLRVAQLARRLAEELGL---------------SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILR 69 (145)
T ss_pred HHHHHHHHHHHHHHHHhCc---------------CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHH
Confidence 6999999999988766532 113457899999999999976 46788899999987
Q ss_pred cCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccC
Q 007976 430 NGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 499 (582)
Q Consensus 430 ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 499 (582)
+-. ..+..+.... ++..+..+|....+........ .-.....++.++++|+.++....
T Consensus 70 ~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~AD~~~~~~~ 127 (145)
T cd00077 70 ELL-LEEVIKLIDE------LILAVDASHHERLDGLGYPDGL-----KGEEITLEARIVKLADRLDALRR 127 (145)
T ss_pred Hhh-hcccccccHH------HHHHHHHHcccCCCCCCCCCCC-----CcccCCHHHHHHHHHHHHHHHhc
Confidence 632 2344444444 3444444555444332211111 11233568889999999986654
No 18
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.51 E-value=0.0025 Score=66.78 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=83.8
Q ss_pred EEEEecccceEEEEEEEeCCC------CEEEEEee-eeeeeeccCCC----------------cCCCCCHHHHHHHHHHH
Q 007976 16 ASIDMGTSSFKLLIIRAYPNG------KFLTIDTL-KQPVILGRDLS----------------SSCSISTQSQARSVESL 72 (582)
Q Consensus 16 AvIDIGSNSiRL~I~e~~~~~------~~~~l~~~-k~~vrLg~g~~----------------~~g~Ls~e~i~r~~~~L 72 (582)
-.||+||++++.-+- ..| +.--+++. .+.+-+|+... .+|.|++ .+.+-.-|
T Consensus 4 igIDLGT~~t~i~~~---~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D--~~~~~~~l 78 (326)
T PF06723_consen 4 IGIDLGTSNTRIYVK---GKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIAD--YEAAEEML 78 (326)
T ss_dssp EEEEE-SSEEEEEET---TTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESS--HHHHHHHH
T ss_pred eEEecCcccEEEEEC---CCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccC--HHHHHHHH
Confidence 479999999887321 122 11122222 23444554321 3466653 33444566
Q ss_pred HHHHHHHHHc-CCCCccEE-EEEehhhhhcCChHHHHHHHHHHcC-CcEEEeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 007976 73 LMFRDIIQSH-NISRDHTR-AVATAAVRAAENKDEFVECVREKVG-FEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (582)
Q Consensus 73 ~~f~~~~~~~-~v~~~~i~-~vATsA~R~A~N~~~fl~~I~~~tG-~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviD 149 (582)
+.|-+.+... .+. +.+ +++.-+==....++.+.+.++. .| -+|.+|+.. ....+|+-.... .....+++|
T Consensus 79 ~~~l~k~~~~~~~~--~p~vvi~vP~~~T~verrA~~~a~~~-aGa~~V~li~ep---~AaAiGaGl~i~-~~~g~miVD 151 (326)
T PF06723_consen 79 RYFLKKALGRRSFF--RPRVVICVPSGITEVERRALIDAARQ-AGARKVYLIEEP---IAAAIGAGLDIF-EPRGSMIVD 151 (326)
T ss_dssp HHHHHHHHTSS-SS----EEEEEE-SS--HHHHHHHHHHHHH-TT-SEEEEEEHH---HHHHHHTT--TT-SSS-EEEEE
T ss_pred HHHHHHhccCCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecch---HHHHhcCCCCCC-CCCceEEEE
Confidence 7776665542 222 222 2332221122345568887764 56 568888755 444445432222 123479999
Q ss_pred eCCCceEEEEeeCCeEEEEEEEechHHHHHHh
Q 007976 150 IGGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (582)
Q Consensus 150 IGGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (582)
||||+||+.+..-|.+..+.|+++|.-.+.+.
T Consensus 152 IG~GtTdiavislggiv~s~si~~gG~~~Dea 183 (326)
T PF06723_consen 152 IGGGTTDIAVISLGGIVASRSIRIGGDDIDEA 183 (326)
T ss_dssp E-SS-EEEEEEETTEEEEEEEES-SHHHHHHH
T ss_pred ECCCeEEEEEEECCCEEEEEEEEecCcchhHH
Confidence 99999999999999999999999999877663
No 19
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.49 E-value=0.0012 Score=71.45 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=88.5
Q ss_pred EEEEEecccceEEEEEEEeCC---C-----CEEEEEeee---eeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 007976 15 FASIDMGTSSFKLLIIRAYPN---G-----KFLTIDTLK---QPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHN 83 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~---~-----~~~~l~~~k---~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~ 83 (582)
-..|||||.+..|++.++.=. + ++.++++.- .++-+ -=+.....|..+++.+.++. +|++ -|
T Consensus 8 SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~f-TPl~~~~~ID~~~i~~~V~~--ey~~----Ag 80 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYF-TPLLKQGEIDEAAIKELIEE--EYQK----AG 80 (475)
T ss_pred EEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCcee-cCCCCCccccHHHHHHHHHH--HHHH----cC
Confidence 478999999999999887521 1 344554321 11111 11223467778887776654 3332 23
Q ss_pred CCCccEE---EEEehhhhhcCChHHHHHHHHHH--------cCCcEEEeChHHHHHHHHhhhhc-cCC-CCCCceEEEEe
Q 007976 84 ISRDHTR---AVATAAVRAAENKDEFVECVREK--------VGFEVDVLTGEQEAKFVYMGVLQ-FLP-VFDRLVLSVDI 150 (582)
Q Consensus 84 v~~~~i~---~vATsA~R~A~N~~~fl~~I~~~--------tG~~i~VIsgeEEA~l~~~gv~~-~l~-~~~~~~lviDI 150 (582)
+++++|. .+=|...-...|....+++.-.. .|+++ |+.+..+|... .+. ..+...+++||
T Consensus 81 i~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~l-------e~iva~~ASg~avLseEke~gVa~IDI 153 (475)
T PRK10719 81 IAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDL-------ESIIAGKGAGAQTLSEERNTRVLNIDI 153 (475)
T ss_pred CCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccH-------HHhhhHHHhhHHHhhhhccCceEEEEe
Confidence 3332221 12222222334666666653322 24443 33333222221 121 12345899999
Q ss_pred CCCceEEEEeeCCeEEEEEEEechHHHHHHh
Q 007976 151 GGGSTEFVIGKRGKVVFCESVNLGHVSLSEK 181 (582)
Q Consensus 151 GGGStEl~~~~~~~~~~~~SlplG~vrl~e~ 181 (582)
|||+|.+.++++|++.++.++|+|.-.++..
T Consensus 154 GgGTT~iaVf~~G~l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 154 GGGTANYALFDAGKVIDTACLNVGGRLIETD 184 (475)
T ss_pred CCCceEEEEEECCEEEEEEEEecccceEEEC
Confidence 9999999999999999999999999887764
No 20
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.36 E-value=0.00095 Score=63.14 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=70.3
Q ss_pred HHHHHhCcccc-chhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC-CCchhhhHH
Q 007976 349 RLAMRFNNKKR-VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-KGYHKQSCH 426 (582)
Q Consensus 349 ~l~~ry~~d~~-~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~-~~h~kHS~y 426 (582)
.|.++|..+.. ..|+.+|+.+|..|-..+.. .+. +.+..++.+||+|||||+...+ ..|..-++.
T Consensus 3 ~ll~~~~~~~~~~~Hs~~Va~~A~~ia~~~~~-~~~------------~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~ 69 (164)
T TIGR00295 3 RLLDKYKCDESVRRHCLAVARVAMELAENIRK-KGH------------EVDMDLVLKGALLHDIGRARTHGFEHFVKGAE 69 (164)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHhcc-ccc------------cCCHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 34555554432 26999999999987655431 111 1245789999999999998765 468888998
Q ss_pred HHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhcc
Q 007976 427 IIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 496 (582)
Q Consensus 427 iI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 496 (582)
++.+. |++. +. +..+.+++....|......+ .+++.+..-....+.|+.+||.|..
T Consensus 70 iL~~~----g~~~-~i--------~~iI~~H~~~g~p~~~~~~~-~l~~~~~~p~t~ea~IV~~AD~l~~ 125 (164)
T TIGR00295 70 ILRKE----GVDE-KI--------VRIAERHFGAGINAEEASKL-GLPPKDYMPETLEEKIVAHADNLIM 125 (164)
T ss_pred HHHHc----CCCH-HH--------HHHHHHHhCCCCchhhHhhc-CCCcccCCCCCHHHHHHHHHHHhcc
Confidence 77753 6653 32 22333444443342111011 2222211112246779999999963
No 21
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.11 E-value=0.008 Score=63.61 Aligned_cols=40 Identities=38% Similarity=0.553 Sum_probs=34.1
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhhc
Q 007976 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (582)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (582)
..+++|||..+|+++++++|++.++.++++|.-.+++...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G~~~l~~~i~ 220 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIGGNDLTEAIA 220 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeCHHHHHHHHH
Confidence 4699999999999999999999999999999999998654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.07 E-value=0.014 Score=61.70 Aligned_cols=155 Identities=18% Similarity=0.241 Sum_probs=89.4
Q ss_pred EEEEecccceEEEEEEEeCCC------CEEEEEeee-eeeeeccC----------------CCcCCCCCH-HHHHHHHHH
Q 007976 16 ASIDMGTSSFKLLIIRAYPNG------KFLTIDTLK-QPVILGRD----------------LSSSCSIST-QSQARSVES 71 (582)
Q Consensus 16 AvIDIGSNSiRL~I~e~~~~~------~~~~l~~~k-~~vrLg~g----------------~~~~g~Ls~-e~i~r~~~~ 71 (582)
-.||+||+.+++... . ++ ++.-++..+ ..+-.|+. -..+|.+.+ +.+++.+
T Consensus 6 ~gIDlGt~~~~i~~~--~-~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l-- 80 (336)
T PRK13928 6 IGIDLGTANVLVYVK--G-KGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKML-- 80 (336)
T ss_pred eEEEcccccEEEEEC--C-CCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHH--
Confidence 389999999988663 1 11 111222111 22234443 123466644 4454444
Q ss_pred HHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEE
Q 007976 72 LLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVD 149 (582)
Q Consensus 72 L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviD 149 (582)
+.+.+.++.. ... .-++|-|--.---.+....+..+.+..|+++ .+++...=|-+.| |. ... .+...+|+|
T Consensus 81 -~~~~~~~~~~~~~~--~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~-g~--~~~-~~~~~lVvD 153 (336)
T PRK13928 81 -KYFINKACGKRFFS--KPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA-GL--DIS-QPSGNMVVD 153 (336)
T ss_pred -HHHHHHHhccCCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHc-CC--ccc-CCCeEEEEE
Confidence 4443333222 121 2234444333223356677777788889985 5665555444433 22 222 123489999
Q ss_pred eCCCceEEEEeeCCeEEEEEEEechHHHHHHhh
Q 007976 150 IGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (582)
Q Consensus 150 IGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (582)
+|||+|+++++..+.+....++++|.-.+++..
T Consensus 154 iGggttdvsvv~~g~~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 154 IGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred eCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHH
Confidence 999999999999888888889999988887754
No 23
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=96.94 E-value=0.0087 Score=59.62 Aligned_cols=114 Identities=16% Similarity=0.081 Sum_probs=68.2
Q ss_pred HHHHHHHHhCccccchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCCchhhhH
Q 007976 346 SVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSC 425 (582)
Q Consensus 346 s~~~l~~ry~~d~~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~h~kHS~ 425 (582)
.+..+++...-+....|+.+|..+|..|-.+-.+-++ -+..+|.+||+|||||..-.+.+..+.++
T Consensus 43 ~a~~~~~~~l~~~~~~Hs~RV~~~a~~ia~~e~~~~~--------------~D~evl~lAALLHDIG~~~~~~~~~~~~f 108 (228)
T TIGR03401 43 FAQEYAKARLPPETYNHSLRVYYYGLAIARDQFPEWD--------------LSDETWFLTCLLHDIGTTDENMTATKMSF 108 (228)
T ss_pred HHHHHHHhhCCHhhhHHHHHHHHHHHHHHHHhccccC--------------CCHHHHHHHHHHHhhccccccCCcccCCH
Confidence 3444444332233347999999999865321111112 13468999999999998433322122222
Q ss_pred ---------HHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhcc
Q 007976 426 ---------HIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQ 496 (582)
Q Consensus 426 ---------yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~ 496 (582)
-++... .|++..+.. .|..++..|+..- .. .+ . ..++.|+..|+.||.
T Consensus 109 e~~ga~~A~~~L~~~---~G~~~~~~~------~V~~aI~~H~~~~--~~-~~---~--------~~e~~lvq~Ad~lDa 165 (228)
T TIGR03401 109 EFYGGILALDVLKEQ---TGANQDQAE------AVAEAIIRHQDLG--VD-GT---I--------TTLGQLLQLATIFDN 165 (228)
T ss_pred HHHHHHHHHHHHHHC---CCCCHHHHH------HHHHHHHHHhCCC--CC-CC---c--------CHHHHHHHHHHHHhH
Confidence 233332 399999999 8888888886532 11 11 1 236889999999984
No 24
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.86 E-value=0.029 Score=60.87 Aligned_cols=151 Identities=22% Similarity=0.309 Sum_probs=98.0
Q ss_pred EEEEEecccceEEEEEEEeC---CC-----CEEEEEeeeeeeeeccCC-----CcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007976 15 FASIDMGTSSFKLLIIRAYP---NG-----KFLTIDTLKQPVILGRDL-----SSSCSISTQSQARSVESLLMFRDIIQS 81 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~---~~-----~~~~l~~~k~~vrLg~g~-----~~~g~Ls~e~i~r~~~~L~~f~~~~~~ 81 (582)
-..|||||.+..|++.++.= .+ ++.++++ +.+ .-..+ .....|..+++.+.++ ++|++
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dk--eVi-YrS~I~fTPl~~~~~ID~~al~~iv~--~eY~~---- 75 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDK--EVI-YRSPIYFTPLLSQTEIDAEALKEIVE--EEYRK---- 75 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEEecc--EEE-ecCCccccCCCCCCccCHHHHHHHHH--HHHHH----
Confidence 36899999999999988541 11 2444433 221 11122 2336777777777654 34443
Q ss_pred cCCCCccEE----EEEehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhcc-CC-CCCCceEEEEeCCCc
Q 007976 82 HNISRDHTR----AVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF-LP-VFDRLVLSVDIGGGS 154 (582)
Q Consensus 82 ~~v~~~~i~----~vATsA~R~A~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~-l~-~~~~~~lviDIGGGS 154 (582)
-|+.+++|. ++.-++.|+ +|++++++.+....|== |-.=-..=|+-+...|.=.. +. ......+=+|||||.
T Consensus 76 Agi~p~~I~TGAVIITGETArK-eNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGT 154 (473)
T PF06277_consen 76 AGITPEDIDTGAVIITGETARK-ENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGT 154 (473)
T ss_pred cCCCHHHCccccEEEecchhhh-hhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCc
Confidence 355544432 222244444 79999999999988732 22333456888888875322 21 123457889999999
Q ss_pred eEEEEeeCCeEEEEEEEechH
Q 007976 155 TEFVIGKRGKVVFCESVNLGH 175 (582)
Q Consensus 155 tEl~~~~~~~~~~~~SlplG~ 175 (582)
|-+++|++|++..+..|.+|.
T Consensus 155 tN~avf~~G~v~~T~cl~IGG 175 (473)
T PF06277_consen 155 TNIAVFDNGEVIDTACLDIGG 175 (473)
T ss_pred eeEEEEECCEEEEEEEEeecc
Confidence 999999999999999999996
No 25
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=96.84 E-value=0.027 Score=59.51 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=69.7
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHH-HcCCCCcc-EEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHH
Q 007976 56 SSCSIS-TQSQARSVESLLMFRDIIQ-SHNISRDH-TRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVY 131 (582)
Q Consensus 56 ~~g~Ls-~e~i~r~~~~L~~f~~~~~-~~~v~~~~-i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~ 131 (582)
.+|.+. .+.++.. |+.+...+. ..+..... -.+++..+.-...+++.+.+ .-+..|+++ .+++..-=|-+.|
T Consensus 67 ~~G~I~d~d~~~~~---l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~ 142 (335)
T PRK13929 67 KDGVIADYDMTTDL---LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGA 142 (335)
T ss_pred CCCccCCHHHHHHH---HHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhc
Confidence 345553 3544443 444444332 34543221 22344344434445566666 556679885 5665554444432
Q ss_pred hhhhccCCC-CCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhh
Q 007976 132 MGVLQFLPV-FDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF 182 (582)
Q Consensus 132 ~gv~~~l~~-~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f 182 (582)
| ++. ....++|+|+|||+|+++.+..+.+..+.++++|.-.+++..
T Consensus 143 -g----~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l 189 (335)
T PRK13929 143 -D----LPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDI 189 (335)
T ss_pred -C----CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHH
Confidence 2 221 234589999999999999997777888889999988887643
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.82 E-value=0.035 Score=58.44 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 007976 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (582)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (582)
.+|.|.-.---....+.+.++.+..|++. .+++.. ....++...... ....++|+|+|||.|+++.+..|.+...
T Consensus 102 ~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep---~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~~~ 177 (335)
T PRK13930 102 RIVICVPSGITEVERRAVREAAEHAGAREVYLIEEP---MAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIVYS 177 (335)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccH---HHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEEee
Confidence 33444433222334445555667788875 455433 323222211111 1234799999999999999999998888
Q ss_pred EEEechHHHHHHhh
Q 007976 169 ESVNLGHVSLSEKF 182 (582)
Q Consensus 169 ~SlplG~vrl~e~f 182 (582)
...++|...+++..
T Consensus 178 ~~~~lGG~~id~~l 191 (335)
T PRK13930 178 ESIRVAGDEMDEAI 191 (335)
T ss_pred cCcCchhHHHHHHH
Confidence 88999998888754
No 27
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.75 E-value=0.1 Score=53.93 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=55.3
Q ss_pred HHcCCcEEEeChHHHHHHHHhhhh-ccCCCCC--CceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHHhhc
Q 007976 112 EKVGFEVDVLTGEQEAKFVYMGVL-QFLPVFD--RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFG 183 (582)
Q Consensus 112 ~~tG~~i~VIsgeEEA~l~~~gv~-~~l~~~~--~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e~f~ 183 (582)
+..|+++.|++=+.=|-+..+... +.+.... ...+++|||+-||++.+..+|++.+....|+|.--|++.+.
T Consensus 159 ~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 159 ELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEeeccCcHHHHHHHHH
Confidence 346999999988887777766632 2222111 12469999999999999999999999999999999998653
No 28
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.58 E-value=0.018 Score=58.09 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=80.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+..||+||.|++.++++ +| +++..... +.+.. .....+++++. +++.+.+..++..++.
T Consensus 2 ~lGIDiGtts~K~vl~d---~g--~il~~~~~---------~~~~~----~~~~~~~l~~~---~~~~~~~~~~i~~i~~ 60 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME---DG--KVIGYKWL---------DTTPV----IEETARAILEA---LKEAGIGLEPIDKIVA 60 (248)
T ss_pred EEEEEcChhheEEEEEc---CC--EEEEEEEe---------cCCCC----HHHHHHHHHHH---HHHcCCChhheeEEEE
Confidence 46799999999999996 34 44544432 11111 22233444443 3455665556666654
Q ss_pred hhhh-hcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE---EEEE
Q 007976 95 AAVR-AAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV---FCES 170 (582)
Q Consensus 95 sA~R-~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~---~~~S 170 (582)
+.-+ ..-. | .+ .. ..|.-.-..|+..-.|. . -.++||||..|-++.+++|++. ....
T Consensus 61 Tg~~~~~v~---~-------~~---~~---~~ei~~~~~g~~~~~~~--~-~~vidiGgqd~k~i~~~~g~~~~~~~n~~ 121 (248)
T TIGR00241 61 TGYGRHKVG---F-------AD---KI---VTEISCHGKGANYLAPE--A-RGVIDIGGQDSKVIKIDDGKVDDFTMNDK 121 (248)
T ss_pred ECCCccccc---c-------cC---Cc---eEEhhHHHHHHHHHCCC--C-CEEEEecCCeeEEEEECCCcEeeeeecCc
Confidence 4443 3221 1 11 11 23556666777766653 2 3699999999999999999887 5666
Q ss_pred EechHHHHHHhhc
Q 007976 171 VNLGHVSLSEKFG 183 (582)
Q Consensus 171 lplG~vrl~e~f~ 183 (582)
...|+-++.|...
T Consensus 122 ca~Gtg~f~e~~a 134 (248)
T TIGR00241 122 CAAGTGRFLEVTA 134 (248)
T ss_pred ccccccHHHHHHH
Confidence 7889999988764
No 29
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.55 E-value=0.044 Score=57.73 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=56.3
Q ss_pred EEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 007976 90 RAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (582)
Q Consensus 90 ~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (582)
.+|-|.-.---.+..+.+..+-+..|++. .+++..--|-|.| |. ... .+..++|+|+|||+|+++.+..+.+...
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lVvDiG~gttdvs~v~~~~~~~~ 175 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA-GL--PVE-EPTGSMVVDIGGGTTEVAVISLGGIVVS 175 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhc-CC--ccc-CCceEEEEEcCCCeEEEEEEEeCCEEec
Confidence 34444333222233444556667778884 5666655555543 21 111 2245799999999999999976667777
Q ss_pred EEEechHHHHHHhh
Q 007976 169 ESVNLGHVSLSEKF 182 (582)
Q Consensus 169 ~SlplG~vrl~e~f 182 (582)
.+.++|.-.+++..
T Consensus 176 ~~~~lGG~did~~l 189 (333)
T TIGR00904 176 RSIRVGGDEFDEAI 189 (333)
T ss_pred CCccchHHHHHHHH
Confidence 78888888777754
No 30
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.33 E-value=0.017 Score=60.51 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHhCccc-cchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC-Cchhh
Q 007976 346 SVVRLAMRFNNKK-RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK-GYHKQ 423 (582)
Q Consensus 346 s~~~l~~ry~~d~-~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~-~h~kH 423 (582)
-+.++..+|..+. ...|..+|+++|..|=++ .+. +..++.+||+|||||..-.+. +|..-
T Consensus 174 e~l~Ll~k~~~~e~l~~Hs~rVa~lA~~LA~~----~~~--------------D~~ll~aAALLHDIGK~k~~~~~H~~~ 235 (339)
T PRK12703 174 QCLDLLKKYGASDLLIRHVKTVYKLAMRIADC----INA--------------DRRLVAAGALLHDIGRTKTNGIDHAVA 235 (339)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----cCC--------------CHHHHHHHHHHHhcccccccCCCHHHH
Confidence 3456666665442 237999999999876433 221 246888999999999987654 57777
Q ss_pred hHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccC
Q 007976 424 SCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 499 (582)
Q Consensus 424 S~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 499 (582)
++-++.. .||+... +..+.+++....+... .....|++.+..-...-+.|+..|+.|.....
T Consensus 236 Ga~iL~e----~G~~e~i---------~~iIe~H~g~G~~~~~-~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r 297 (339)
T PRK12703 236 GAEILRK----ENIDDRV---------VSIVERHIGAGITSEE-AQKLGLPVKDYVPETIEEMIVAHADNLFAGDK 297 (339)
T ss_pred HHHHHHH----CCCCHHH---------HHHHHHHhccCCCcch-hhccCCccccCCCCCHHHHHHHHHHHHhcCCC
Confidence 7776653 3676432 3333443433233211 11111222111111224569999999976553
No 31
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.30 E-value=0.081 Score=55.68 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEehhhhhcCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 007976 91 AVATAAVRAAENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (582)
Q Consensus 91 ~vATsA~R~A~N~~~fl~~I~~~tG~~i~-VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (582)
+|-|.-.---.+.+..+...-+..|++.- +++...-|-+.| |. ... ....++|+|+|||.|.++.+..+.+....
T Consensus 99 ~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~-g~--~~~-~~~~~lvvDiGggttdvs~v~~~~~~~~~ 174 (334)
T PRK13927 99 VVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGA-GL--PVT-EPTGSMVVDIGGGTTEVAVISLGGIVYSK 174 (334)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHc-CC--ccc-CCCeEEEEEeCCCeEEEEEEecCCeEeeC
Confidence 34443332333455566666777888744 444443333332 22 111 12347999999999999999766677777
Q ss_pred EEechHHHHHHhhc
Q 007976 170 SVNLGHVSLSEKFG 183 (582)
Q Consensus 170 SlplG~vrl~e~f~ 183 (582)
+.++|.-.+++.+.
T Consensus 175 ~~~lGG~~id~~l~ 188 (334)
T PRK13927 175 SVRVGGDKFDEAII 188 (334)
T ss_pred CcCChHHHHHHHHH
Confidence 88899888887553
No 32
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.24 E-value=0.018 Score=46.54 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC-----CCchhhhHHHHHcC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK-----KGYHKQSCHIIMNG 431 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~-----~~h~kHS~yiI~ns 431 (582)
.|+..|+.+|..+ .+..++ + ...+.+||+|||||+...+ ..|...+++++...
T Consensus 7 ~H~~~v~~~a~~l----a~~~~~-----------~---~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~ 64 (80)
T TIGR00277 7 QHSLEVAKLAEAL----ARELGL-----------D---VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKY 64 (80)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------C---HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHc
Confidence 6888999998865 333332 1 2458899999999998864 56778888887643
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.20 E-value=0.02 Score=63.86 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~---~h~kHS~yiI~ns~~l~G~ 437 (582)
.|+..|+.+|..| +..+|++ ...+..|++|||||+.+.+. +|..-+++++... |+
T Consensus 332 ~Hs~~VA~lA~~L----A~~lgld--------------~~~a~~AGLLHDIGK~~~~e~~~~H~~~Ga~ll~~~----~~ 389 (514)
T TIGR03319 332 QHSIEVAHLAGIM----AAELGED--------------VKLAKRAGLLHDIGKAVDHEVEGSHVEIGAELAKKY----KE 389 (514)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHhcCcccchhhcccHHHHHHHHHHHc----CC
Confidence 6999999999875 4444432 23577899999999986543 5666778888654 33
Q ss_pred CHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccCCC
Q 007976 438 STDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 501 (582)
Q Consensus 438 s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 501 (582)
+ . .+...++||....++ ...++.++.+|+.|+.++.+.
T Consensus 390 ~----~------~V~~aI~~HH~~~~~----------------~~~~a~IV~~AD~lsa~rpga 427 (514)
T TIGR03319 390 S----P------EVVNAIAAHHGDVEP----------------TSIEAVLVAAADALSAARPGA 427 (514)
T ss_pred C----H------HHHHHHHHhCCCCCC----------------CCHHHHHHHHHHHhcCCCCCC
Confidence 3 2 445566666653211 024777888999988877544
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=96.08 E-value=0.021 Score=54.84 Aligned_cols=143 Identities=24% Similarity=0.320 Sum_probs=84.5
Q ss_pred CceEEEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCccE
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQ-SHNISRDHT 89 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~-~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~-~~~v~~~~i 89 (582)
.+++-.+|+|+-+|-..|.+- +|. .-........||=|--++ .-.+++..++.++.++ .+|+. +
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~--d~~Pvag~~~~advVRDGiVvd---------f~eaveiVrrlkd~lEk~lGi~---~ 93 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR--DGQPVAGCLDWADVVRDGIVVD---------FFEAVEIVRRLKDTLEKQLGIR---F 93 (277)
T ss_pred CceEEEeecccceEEEEEEcC--CCCeEEEEehhhhhhccceEEe---------hhhHHHHHHHHHHHHHHhhCeE---e
Confidence 368889999999999988864 444 233444445555443222 2334556666666553 45662 2
Q ss_pred EEEEehhhhh---cCChHHHHHHHHHHcCCcEE-EeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeE
Q 007976 90 RAVATAAVRA---AENKDEFVECVREKVGFEVD-VLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKV 165 (582)
Q Consensus 90 ~~vATsA~R~---A~N~~~fl~~I~~~tG~~i~-VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~ 165 (582)
.=-+|+ +-- --|....++-|+ -.|+++- +|+...-|.+ -+.+ +++.|+|||||.|.++++++|++
T Consensus 94 tha~ta-iPPGt~~~~~ri~iNViE-SAGlevl~vlDEPTAaa~-------vL~l--~dg~VVDiGGGTTGIsi~kkGkV 162 (277)
T COG4820 94 THAATA-IPPGTEQGDPRISINVIE-SAGLEVLHVLDEPTAAAD-------VLQL--DDGGVVDIGGGTTGISIVKKGKV 162 (277)
T ss_pred eecccc-CCCCccCCCceEEEEeec-ccCceeeeecCCchhHHH-------Hhcc--CCCcEEEeCCCcceeEEEEcCcE
Confidence 222332 111 112233333333 3577753 6665543322 1233 34799999999999999999999
Q ss_pred EEEEEEechHHHHH
Q 007976 166 VFCESVNLGHVSLS 179 (582)
Q Consensus 166 ~~~~SlplG~vrl~ 179 (582)
+++--=|-|.--++
T Consensus 163 iy~ADEpTGGtHmt 176 (277)
T COG4820 163 IYSADEPTGGTHMT 176 (277)
T ss_pred EEeccCCCCceeEE
Confidence 98877777654443
No 35
>PRK12705 hypothetical protein; Provisional
Probab=96.05 E-value=0.031 Score=61.75 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~---~h~kHS~yiI~ns~~l~G~ 437 (582)
.|+..|+.+|..| +...|+ + ..+...|++|||||..+.+. .|..-+++++... ||
T Consensus 326 ~HSl~VA~lA~~L----A~~lGl-----------d---~d~a~~AGLLHDIGK~ie~e~~~~H~~iGaeLlkk~----~~ 383 (508)
T PRK12705 326 SHSLEVAHLAGII----AAEIGL-----------D---PALAKRAGLLHDIGKSIDRESDGNHVEIGAELARKF----NE 383 (508)
T ss_pred HHHHHHHHHHHHH----HHHcCc-----------C---HHHHHHHHHHHHcCCcchhhhcccHHHHHHHHHHhc----CC
Confidence 5999999999875 443443 2 24567899999999998664 4555688887654 44
Q ss_pred CHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccCCC
Q 007976 438 STDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 501 (582)
Q Consensus 438 s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 501 (582)
++ .+...+.+|....... ...+.|+.+|++|+..+.+.
T Consensus 384 p~----------~Vv~aI~~HHe~~~~~----------------~~~a~IVaiADaLSaaRpGa 421 (508)
T PRK12705 384 PD----------EVINAIASHHNKVNPE----------------TVYSVLVQIADALSAARPGA 421 (508)
T ss_pred CH----------HHHHHHHHhCCCCCCC----------------CHHHHHHHHHHHHcCCCCCC
Confidence 43 2345555666433211 13677899999998877554
No 36
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.97 E-value=0.014 Score=61.96 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC--------------------CCc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK--------------------KGY 420 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~--------------------~~h 420 (582)
.|+..|+.+|..| +..+++ ++ ..+.+|++|||||+...+ ..|
T Consensus 199 ~HSl~VA~~A~~L----A~~~g~-----------d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H 260 (342)
T PRK07152 199 KHCLRVAQLAAEL----AKKNNL-----------DP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLH 260 (342)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------CH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHh
Confidence 7999999999975 333332 22 568899999999996532 235
Q ss_pred hhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccC
Q 007976 421 HKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDC 499 (582)
Q Consensus 421 ~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~ 499 (582)
..-+++++.+. +||+.++ ++..++||..... ....++.|+.+|+.++..|.
T Consensus 261 ~~~Ga~ll~~~---~~~p~~~---------i~~aI~~Hh~~~~----------------~~~~l~~iV~lAD~l~~~R~ 311 (342)
T PRK07152 261 QYVGALWLKHV---YGIDDEE---------ILNAIRNHTSLAE----------------EMSTLDKIVYVADKIEPGRK 311 (342)
T ss_pred HHHHHHHHHHH---cCCCcHH---------HHHHHHhccCCCC----------------CcCHHHHHHHhhhhcccCCC
Confidence 66666666554 2554433 3455677764211 12448999999999987654
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=95.94 E-value=0.037 Score=61.83 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC---CCchhhhHHHHHcCCCCCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK---KGYHKQSCHIIMNGDHLYGY 437 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~---~~h~kHS~yiI~ns~~l~G~ 437 (582)
.|+..|+.+|..| +...|++ ...+..|++|||||+...+ .+|...++.++... |+
T Consensus 338 ~Hs~~Va~lA~~l----A~~lgld--------------~~~a~~AgLLHDIGK~~~~e~~~~H~~iGa~il~~~----~~ 395 (520)
T PRK12704 338 QHSIEVAHLAGLM----AAELGLD--------------VKLAKRAGLLHDIGKALDHEVEGSHVEIGAELAKKY----KE 395 (520)
T ss_pred HHHHHHHHHHHHH----HHHhCcC--------------HHHHHHHHHHHccCcCccccccCCHHHHHHHHHHHc----CC
Confidence 5999999999864 4444432 2457799999999998755 35777788887654 33
Q ss_pred CHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccCC
Q 007976 438 STDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCV 500 (582)
Q Consensus 438 s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~ 500 (582)
+ . .+..++.+|+...+. . ..++.|+.+|++|+..+.+
T Consensus 396 ~----~------~v~~aI~~HHe~~~~--------~--------~~~a~IV~~ADaLsa~Rpg 432 (520)
T PRK12704 396 S----P------VVINAIAAHHGDEEP--------T--------SIEAVLVAAADAISAARPG 432 (520)
T ss_pred C----H------HHHHHHHHcCCCCCC--------C--------CHHHHHHHHHHHHhCcCCC
Confidence 3 3 456677777753221 0 1367789999999887753
No 38
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=95.83 E-value=0.083 Score=56.46 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=62.5
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 007976 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (582)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (582)
+++++.+..++-|...-. ...++.+.+.+.+..|++ +-++ .++.+..+|. ....++|||||+|+|.++.
T Consensus 89 l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~---~~~~~a~~~~------g~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 89 LRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIA---IQAVLSLYAS------GRTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred cCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEe---ccHHHHHHhC------CCCEEEEEecCCCcceEEE
Confidence 455544455666654322 344566777777777776 3334 3444544442 1345899999999999999
Q ss_pred eeCCeEEEE--EEEechHHHHHHhhc
Q 007976 160 GKRGKVVFC--ESVNLGHVSLSEKFG 183 (582)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f~ 183 (582)
+-+|.+... ..+|+|.-.+++.+.
T Consensus 160 v~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 160 VVDGYVLPHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred EECCEEchhhheeccCcHHHHHHHHH
Confidence 999998755 778999988887653
No 39
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=95.76 E-value=0.013 Score=57.06 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=49.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCc-c-hHHHHHHHHHHhhcccccCCCCchhhhHHHHH
Q 007976 357 KKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFED-K-DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429 (582)
Q Consensus 357 d~~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~-~-~~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ 429 (582)
|-...|+.-|+.-|+.+|+-|... |..+... .++..+ + ...+.-.+|+|||||..++-.+|+.||+++-+
T Consensus 56 DHG~vHa~Iva~~Al~i~~lL~~~-Gv~ps~v--~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~ 127 (269)
T COG3294 56 DHGPVHARIVANSALAIYKLLLEK-GVKPSGV--TDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLAL 127 (269)
T ss_pred CCCceeeeeccchHHHHHHHHHhc-CCCcccc--cccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhH
Confidence 444589999999999999999754 2222110 011111 2 23567789999999999999999999998753
No 40
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=95.53 E-value=0.023 Score=53.73 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHH---HHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccC----------------CCCch
Q 007976 361 KAGAQCASIAKDIF---EGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTS----------------KKGYH 421 (582)
Q Consensus 361 ~ha~~V~~~a~~LF---d~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~----------------~~~h~ 421 (582)
.|...|+..|..|. ..+.... +.+.+.++.+||+|||||+.-. ...|.
T Consensus 3 ~H~~~v~~~a~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~ 69 (177)
T TIGR01596 3 EHLLDVAAVAEKLKNLDIVIADLI-------------GKLLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHS 69 (177)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH-------------hhHHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHH
Confidence 58888888887764 2222221 2234689999999999999632 34566
Q ss_pred hhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCC
Q 007976 422 KQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPR 464 (582)
Q Consensus 422 kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~ 464 (582)
.-|.+++...-.-.|+...... .++.++.+|.+..+.
T Consensus 70 ~~s~~~~~~~~~~~~~~~~~~~------~~~~~I~~HHg~~~~ 106 (177)
T TIGR01596 70 LLSAKLLDALLIKKGYEEEVFK------LLALAVIGHHGGLSN 106 (177)
T ss_pred HHHHHHHHHHHHHccccHHHHH------HHHHHHHHhCCCchh
Confidence 6677776542101466777777 888888889887653
No 41
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=95.36 E-value=0.069 Score=50.06 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhccccc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT 415 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I 415 (582)
.|+..|+.+|..| +..+++ + .....+|++|||||+..
T Consensus 11 ~Hsl~Va~~a~~l----A~~~~~-----------d---~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 11 QHCLGVGQTAKQL----AEANKL-----------D---SKKAEIAGAYHDLAKFL 47 (158)
T ss_pred HHHHHHHHHHHHH----HHHhCc-----------C---HHHHHHHHHHHHHhccC
Confidence 7999999999975 333332 1 13588999999999864
No 42
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=95.29 E-value=0.31 Score=52.06 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCCCccEEEEEehhhhhc-CChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 007976 83 NISRDHTRAVATAAVRAA-ENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (582)
Q Consensus 83 ~v~~~~i~~vATsA~R~A-~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (582)
.+++.+..++-|...-.. ..++.+.+.+.+..|.+ +-+++..-=|.| +. ....++|||||+|+|.++.+
T Consensus 90 ~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~---~~------g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 90 KVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLY---AS------GRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHH---hc------CCCeEEEEECCCCeeEEEEE
Confidence 333333445555433222 34566777777777765 444444333333 21 12458999999999999999
Q ss_pred eCCeEEE--EEEEechHHHHHHhhc
Q 007976 161 KRGKVVF--CESVNLGHVSLSEKFG 183 (582)
Q Consensus 161 ~~~~~~~--~~SlplG~vrl~e~f~ 183 (582)
.+|.+.. ...+++|.-.+++.+.
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHH
Confidence 9999875 3788999988887653
No 43
>PRK00106 hypothetical protein; Provisional
Probab=95.27 E-value=0.088 Score=58.66 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC---CchhhhHHHHHcCCCCCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---GYHKQSCHIIMNGDHLYGY 437 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~---~h~kHS~yiI~ns~~l~G~ 437 (582)
.|+-.|+.+|..| +..+|++ ..++..|++|||||+.+.+. .|..-++.++... |+
T Consensus 353 ~HSv~VA~lA~~l----A~~lgld--------------~e~a~~AGLLHDIGK~v~~e~~g~Ha~iGa~ll~~~----~~ 410 (535)
T PRK00106 353 RHSVEVGKLAGIL----AGELGEN--------------VALARRAGFLHDMGKAIDREVEGSHVEIGMEFARKY----KE 410 (535)
T ss_pred HHHHHHHHHHHHH----HHHhCCC--------------HHHHHHHHHHHhccCccCccccCChHHHHHHHHHHc----CC
Confidence 7999999998863 4444431 25799999999999998764 4666777777533 44
Q ss_pred CHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccCCC
Q 007976 438 STDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 501 (582)
Q Consensus 438 s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 501 (582)
++ .+...++||....+.. ..++.++.+|+.|+..+.+.
T Consensus 411 ~~----------~v~~aI~~HH~~~~~~----------------s~~a~IV~~AD~lsa~Rpga 448 (535)
T PRK00106 411 HP----------VVVNTIASHHGDVEPE----------------SVIAVIVAAADALSSARPGA 448 (535)
T ss_pred CH----------HHHHHHHHhCCCCCCC----------------ChHHHHHHHHHHhccCCCCC
Confidence 32 2345555666533221 13688999999998888554
No 44
>PRK10119 putative hydrolase; Provisional
Probab=95.24 E-value=0.077 Score=52.95 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccc-cCCCC---chhhhHHHHH---cC
Q 007976 359 RVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF-TSKKG---YHKQSCHIIM---NG 431 (582)
Q Consensus 359 ~~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~-I~~~~---h~kHS~yiI~---ns 431 (582)
+..|..+|.++|++|= ...+ .+..++.+||+|||||-. -+... +...+...+. ..
T Consensus 26 D~~Hi~RV~~lA~~Ia----~~e~--------------~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a~~a~~~L~~ 87 (231)
T PRK10119 26 DICHFRRVWATAQKLA----ADDD--------------VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAAEETRRILRE 87 (231)
T ss_pred ChHHHHHHHHHHHHHH----HhcC--------------CCHHHHHHHHHHhhcchhhhcCccccchhhHHHHHHHHHHHH
Confidence 3489999999999872 2111 245789999999999741 22211 1222443332 23
Q ss_pred CCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCC-CCchhhcCCCHHHHHHHHHHHH
Q 007976 432 DHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPR-SHHAFLEEFPEQAKQKFRVLCA 486 (582)
Q Consensus 432 ~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~-~~~~~~~~L~~~~~~~v~kL~~ 486 (582)
. ..||+...+. .|..++..|+-+... .....-+.+.+.|| +..||+
T Consensus 88 ~-~~g~~~~~i~------~V~~iI~~~sfs~~~~p~tlE~kIVQDADR--LDAiGA 134 (231)
T PRK10119 88 D-FPDFPAEKIE------AVCHAIEAHSFSAQIAPLTLEAKIVQDADR--LEALGA 134 (231)
T ss_pred c-ccCcCHHHHH------HHHHHHHHcCCCCCCCCCCHHHhhhhhHHH--HHhcch
Confidence 1 2699999999 888888888865311 11223356655554 444444
No 45
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.14 E-value=0.024 Score=65.21 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
+.+|.+||+|||||+... .+|.+-++.+...--.=+||+++++. .+..+++||-.
T Consensus 402 ~~lL~LAALlHDIGKg~g-~dHs~~GA~~A~~i~~RLgl~~~~~e------~V~~LV~~HL~ 456 (693)
T PRK00227 402 PDLLLLGALYHDIGKGYP-RPHEQVGAEMVARAARRMGLNLRDRA------VVQTLVAEHTT 456 (693)
T ss_pred cHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHHHHcCcCHHHHH------HHHHHHHHhcc
Confidence 368899999999999874 47899998888654334799999999 99999999953
No 46
>PTZ00280 Actin-related protein 3; Provisional
Probab=95.02 E-value=0.39 Score=52.29 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCC-CCCceEEEEeCCCceEEEE
Q 007976 83 NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPV-FDRLVLSVDIGGGSTEFVI 159 (582)
Q Consensus 83 ~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~-~~~~~lviDIGGGStEl~~ 159 (582)
++++..-.++-| ..+--..+++.+.+-+.+..+++- -+....-=+.|++......-.. ....++|||+|.|+|.++-
T Consensus 97 ~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~P 176 (414)
T PTZ00280 97 RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIP 176 (414)
T ss_pred ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEE
Confidence 444333333444 444445577888888888888774 3333333333332110100000 2345899999999999999
Q ss_pred eeCCeEEEE--EEEechHHHHHHhh
Q 007976 160 GKRGKVVFC--ESVNLGHVSLSEKF 182 (582)
Q Consensus 160 ~~~~~~~~~--~SlplG~vrl~e~f 182 (582)
+-+|.+... ..+++|.-.+++.+
T Consensus 177 V~~G~~l~~~~~~~~~GG~~lt~~L 201 (414)
T PTZ00280 177 VVDGYVIGSSIKHIPLAGRDITNFI 201 (414)
T ss_pred EECCEEcccceEEecCcHHHHHHHH
Confidence 888887643 56799988888755
No 47
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.96 E-value=0.027 Score=66.09 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
.+|.+||+|||||+-... +|.+-++.+...--.=+||+.++.. .++.+++||-.
T Consensus 443 ~lL~lAaLlHDiGKg~~~-~Hs~~Ga~~a~~i~~RL~l~~~~~~------~v~~LV~~Hl~ 496 (774)
T PRK03381 443 DLLLLGALLHDIGKGRGG-DHSVVGAELARQIGARLGLSPADVA------LLSALVRHHLL 496 (774)
T ss_pred HHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCcCHHHHH------HHHHHHHHhhh
Confidence 578999999999997654 7888888887654334799999999 99999999953
No 48
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=94.96 E-value=0.077 Score=53.60 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEehhhhhcCC--hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEE
Q 007976 91 AVATAAVRAAEN--KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (582)
Q Consensus 91 ~vATsA~R~A~N--~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (582)
+|+-+||-++.. -+.+.+.+++++|.+++|-.-|- ....+|++.+-. .+.+..++|+|||||.=++.+...-+.+
T Consensus 83 AVgiAAMVkt~~l~M~~iA~~l~~~lgv~V~igGvEA--emAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v~~ 159 (332)
T PF08841_consen 83 AVGIAAMVKTDKLQMQMIADELEEELGVPVEIGGVEA--EMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEVTA 159 (332)
T ss_dssp EEEEEEEEE-SS-TCHHHHHHHHHHHTSEEEEECEHH--HHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHCCceEEccccH--HHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcEEE
Confidence 355566655544 35679999999999999977654 455678776533 3456899999999999777664444444
Q ss_pred EEEechHHHHHHh
Q 007976 169 ESVNLGHVSLSEK 181 (582)
Q Consensus 169 ~SlplG~vrl~e~ 181 (582)
.-+ -|+-.+--.
T Consensus 160 iHl-AGAG~mVTm 171 (332)
T PF08841_consen 160 IHL-AGAGNMVTM 171 (332)
T ss_dssp EEE-E-SHHHHHH
T ss_pred EEe-cCCchhhHH
Confidence 434 455444443
No 49
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=94.95 E-value=0.19 Score=51.89 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCccEEEEE-----ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHH
Q 007976 57 SCSISTQSQARSVESLLMFRDIIQ-SHNISRDHTRAVA-----TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (582)
Q Consensus 57 ~g~Ls~e~i~r~~~~L~~f~~~~~-~~~v~~~~i~~vA-----TsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~ 130 (582)
+|.|.+ .+-+-..|+.|-+... ..+....-..+++ |+.=| +++.+..+..-.-++-+|.... -.
T Consensus 72 dGVIAd--~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VEr-----rAi~ea~~~aGa~~V~lieEp~---aA 141 (342)
T COG1077 72 DGVIAD--FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVER-----RAIKEAAESAGAREVYLIEEPM---AA 141 (342)
T ss_pred CcEeec--HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHH-----HHHHHHHHhccCceEEEeccHH---HH
Confidence 344433 2333456777776654 2331111122333 33333 4566777766666777775444 34
Q ss_pred HhhhhccCCCCC-CceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHH
Q 007976 131 YMGVLQFLPVFD-RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (582)
Q Consensus 131 ~~gv~~~l~~~~-~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (582)
..|+- ++... ...+++|||||+||+.+..-+.+..+.|+.+|-=.+-+
T Consensus 142 AIGag--lpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De 190 (342)
T COG1077 142 AIGAG--LPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDE 190 (342)
T ss_pred HhcCC--CcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhH
Confidence 44443 34322 23699999999999999999999999999999755543
No 50
>PTZ00004 actin-2; Provisional
Probab=94.80 E-value=0.47 Score=50.99 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=90.2
Q ss_pred EEEEEecccceEEEEEEEeCCC-C-EEEEEeee----------eeeeeccCC------------CcCCCCC-HHHHHHHH
Q 007976 15 FASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLK----------QPVILGRDL------------SSSCSIS-TQSQARSV 69 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~-~-~~~l~~~k----------~~vrLg~g~------------~~~g~Ls-~e~i~r~~ 69 (582)
.-|||+||.++|.-.+.-+... . ...+-+.+ ..+-+|+.. .++|.+. .++++..+
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i~ 87 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKIW 87 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHHH
Confidence 4799999999999877321100 0 11111111 112234332 2334443 46666555
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEehh-hhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEE
Q 007976 70 ESLLMFRDIIQSHNISRDHTRAVATAA-VRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 70 ~~L~~f~~~~~~~~v~~~~i~~vATsA-~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lv 147 (582)
+-+ |. +..++++....++-|.. +--..+++.+.+-+.+..|++- -+.+. +.++.++. ....++|
T Consensus 88 ~~~--~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~---~~ls~ya~------g~~tglV 153 (378)
T PTZ00004 88 HHT--FY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQ---AVLSLYAS------GRTTGIV 153 (378)
T ss_pred HHH--HH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeecc---HHHHHHhc------CCceEEE
Confidence 531 21 23455544555666654 3333556778888888888773 33333 44444432 2245899
Q ss_pred EEeCCCceEEEEeeCCeEE--EEEEEechHHHHHHhh
Q 007976 148 VDIGGGSTEFVIGKRGKVV--FCESVNLGHVSLSEKF 182 (582)
Q Consensus 148 iDIGGGStEl~~~~~~~~~--~~~SlplG~vrl~e~f 182 (582)
||+|.++|.++-+-+|.+. ....+++|.-.+++.+
T Consensus 154 VDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 154 LDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred EECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 9999999999999988876 4566788888887754
No 51
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.49 E-value=0.44 Score=49.25 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=89.1
Q ss_pred EEEEEecccceEEEEEEEeC----CC----CEEEEEee---eeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Q 007976 15 FASIDMGTSSFKLLIIRAYP----NG----KFLTIDTL---KQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHN 83 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~----~~----~~~~l~~~---k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~ 83 (582)
--.||||+.+..+...++.- .+ +++++++. +.++ +---+.+.|.|.+.++...+ +++|+. -|
T Consensus 7 SVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i-~FTPv~~q~~id~~alk~~v--~eeY~~----AG 79 (473)
T COG4819 7 SVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPI-FFTPVDKQGGIDEAALKKLV--LEEYQA----AG 79 (473)
T ss_pred eeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecce-eeeeecccCCccHHHHHHHH--HHHHHH----cC
Confidence 35799999998766655431 11 23333321 1122 22234566788888877653 556654 36
Q ss_pred CCCccEE---EEEehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHHHhhhh-ccCCC-CCCceEEEEeCCCceEE
Q 007976 84 ISRDHTR---AVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFVYMGVL-QFLPV-FDRLVLSVDIGGGSTEF 157 (582)
Q Consensus 84 v~~~~i~---~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsg-eEEA~l~~~gv~-~~l~~-~~~~~lviDIGGGStEl 157 (582)
+.++.|- ++-|--.-.-+|+...+..+..-.|==|---.| .-|.-+.-.|.- +++.. .....+=+|||||.|.+
T Consensus 80 i~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~ 159 (473)
T COG4819 80 IAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNY 159 (473)
T ss_pred CChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccce
Confidence 5554331 122322223467778888877666622222222 233333333332 23321 12347889999999999
Q ss_pred EEeeCCeEEEEEEEechHH
Q 007976 158 VIGKRGKVVFCESVNLGHV 176 (582)
Q Consensus 158 ~~~~~~~~~~~~SlplG~v 176 (582)
++|+.|++.....|.+|.-
T Consensus 160 slFD~Gkv~dTaCLdiGGR 178 (473)
T COG4819 160 SLFDAGKVSDTACLDIGGR 178 (473)
T ss_pred eeecccccccceeeecCcE
Confidence 9999999999989988863
No 52
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=94.29 E-value=0.15 Score=53.27 Aligned_cols=114 Identities=14% Similarity=0.234 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC------Cchh-hhHHHHHcCC
Q 007976 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK------GYHK-QSCHIIMNGD 432 (582)
Q Consensus 360 ~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~------~h~k-HS~yiI~ns~ 432 (582)
.+|..+|+.++..+ +...| +++++-+++..||.|||||+--=++ ++-. +-+-+....+
T Consensus 187 g~H~~Rv~~~~~~l----Ae~lg-----------Lse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~ 251 (360)
T COG3437 187 GDHLERVAQYSELL----AELLG-----------LSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHP 251 (360)
T ss_pred hhHHHHHHHHHHHH----HHHhC-----------CCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcch
Confidence 36888888888864 44444 4566778999999999999853222 2222 2233334443
Q ss_pred CCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhc
Q 007976 433 HLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQ 495 (582)
Q Consensus 433 ~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld 495 (582)
.+|.+--.+..+ |+...|.|+++|.-+.... -+...|.-++.-. .|.|+.+|+.+|
T Consensus 252 -~~G~~il~~s~~-~mq~a~eIa~~HHErwDGs--GYPdgLkGd~IPl---~arI~aiADvfD 307 (360)
T COG3437 252 -ILGAEILKSSER-LMQVAAEIARHHHERWDGS--GYPDGLKGDEIPL---SARIVAIADVFD 307 (360)
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHhhhccCCC--CCCCCCCccccch---hHHHHHHHHHHH
Confidence 566554444423 5679999999998776542 2334666666554 455566666555
No 53
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=94.17 E-value=0.077 Score=57.63 Aligned_cols=67 Identities=18% Similarity=0.409 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHH
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTD 440 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~ 440 (582)
+|+-=|..+|..+++.|..... . .+++.++.++++||+|||||.. -.-|++..+.+.+ .++.|.
T Consensus 54 eHSLGV~~la~~~~~~l~~~~~--~-------~~~~~~~~~~~~AALLHDIGHg-----PFSH~fE~~~~~~--~~~~He 117 (421)
T COG1078 54 EHSLGVYHLARRLLEHLEKNSE--E-------EIDEEERLLVRLAALLHDIGHG-----PFSHTFEYVLDKN--LGFYHE 117 (421)
T ss_pred chhhHHHHHHHHHHHHHhhccc--c-------ccchHHHHHHHHHHHHHccCCC-----ccccchHHHhccc--ccccHH
Confidence 6888999999999998875432 0 2455677899999999999953 3446666666664 455555
Q ss_pred HHh
Q 007976 441 EIK 443 (582)
Q Consensus 441 E~~ 443 (582)
+..
T Consensus 118 ~~~ 120 (421)
T COG1078 118 DVT 120 (421)
T ss_pred HHH
Confidence 544
No 54
>PTZ00466 actin-like protein; Provisional
Probab=94.11 E-value=0.93 Score=48.78 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=92.6
Q ss_pred cccCCCceEEEEEecccceEEEEEEEeCCC-C-EEEEEeeee----------eeeeccCC------------CcCCCCC-
Q 007976 7 YMQIPQTLFASIDMGTSSFKLLIIRAYPNG-K-FLTIDTLKQ----------PVILGRDL------------SSSCSIS- 61 (582)
Q Consensus 7 ~~~~~~~~~AvIDIGSNSiRL~I~e~~~~~-~-~~~l~~~k~----------~vrLg~g~------------~~~g~Ls- 61 (582)
.-|.....--|||+||.++|.-.+.-+... . ..++-+.+. .+-.|+.. .++|.+.
T Consensus 6 ~~~~~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~d 85 (380)
T PTZ00466 6 AKQLYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIEN 85 (380)
T ss_pred HHHhccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECC
Confidence 334333345799999999998776321100 0 111211111 11233321 1234333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCC
Q 007976 62 TQSQARSVESLLMFRDIIQSHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV 140 (582)
Q Consensus 62 ~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs-A~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~ 140 (582)
-+.++...+-+ |. ..++++.+.-++-|+ .+--..+++.+.+-+.+..+++-=.+ ...+.++..+.
T Consensus 86 wd~~e~iw~~~--f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~--~~~~~lsl~a~------ 151 (380)
T PTZ00466 86 WNDMENIWIHV--YN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFI--SIQAILSLYSC------ 151 (380)
T ss_pred HHHHHHHHHHH--Hh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEE--ecchHHHHHhc------
Confidence 36666666654 32 345554344445454 44444567777888888888764322 23444444432
Q ss_pred CCCceEEEEeCCCceEEEEeeCCeEEE--EEEEechHHHHHHhh
Q 007976 141 FDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (582)
Q Consensus 141 ~~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (582)
....++|||+|-++|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 152 g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L 195 (380)
T PTZ00466 152 GKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYL 195 (380)
T ss_pred CCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHH
Confidence 234689999999999999988888763 456789988887754
No 55
>PTZ00452 actin; Provisional
Probab=94.05 E-value=0.98 Score=48.53 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=63.2
Q ss_pred HcCCCCccEEEEEeh-hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 007976 81 SHNISRDHTRAVATA-AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (582)
Q Consensus 81 ~~~v~~~~i~~vATs-A~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (582)
..++++.+..++-|+ .+.-..|++.+.+-+.+..+++-=.+ ...+.++.++. ....++|||+|-|+|.++-
T Consensus 93 ~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~--~~~~~lslya~------g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 93 ELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYI--SNEAVLSLYTS------GKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred hcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEE--echHHHHHHHC------CCceeeeecCCCCcceEEE
Confidence 345665455556665 44445577788888888888865332 23344444431 2345899999999999999
Q ss_pred eeCCeEE--EEEEEechHHHHHHhh
Q 007976 160 GKRGKVV--FCESVNLGHVSLSEKF 182 (582)
Q Consensus 160 ~~~~~~~--~~~SlplG~vrl~e~f 182 (582)
+-+|.+. ....+++|.-.+++.+
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L 189 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYL 189 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHH
Confidence 9888775 3566788988777754
No 56
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=94.04 E-value=0.063 Score=59.40 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhccccc----------CCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 400 EYLEAACLLHNIGHFT----------SKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 400 ~LL~~Aa~LHdIG~~I----------~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
.+|.+||+|||||+.. ++++|.+-|+.+...--.=++||.+++. .+..+++||-.
T Consensus 280 ~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~~~------~V~~LV~~H~~ 344 (466)
T TIGR02692 280 LVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQMVE------DVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHHhCc
Confidence 4799999999999763 5667888888776533223699999999 99999999964
No 57
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.98 E-value=0.07 Score=63.58 Aligned_cols=56 Identities=25% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCC
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKK 461 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~ 461 (582)
+.+|.+||+|||||+.... +|.+-++.+...--.-+||+.+++. .++.++++|-.-
T Consensus 498 ~~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~il~rl~l~~~~~~------~v~~LV~~Hl~~ 553 (884)
T PRK05007 498 KELLLLAALFHDIAKGRGG-DHSILGAQDALEFAELHGLNSRETQ------LVAWLVRNHLLM 553 (884)
T ss_pred hhHHHHHHHHHhhcCCCCC-ChHHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHHHHh
Confidence 4689999999999998644 7888888877544334799999999 999999999653
No 58
>COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.073 Score=57.04 Aligned_cols=143 Identities=22% Similarity=0.179 Sum_probs=84.8
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHH----HH-HHHcCCCCc
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFR----DI-IQSHNISRD 87 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~----~~-~~~~~v~~~ 87 (582)
+++..||-||-.-|.-|+++. +|......-+-..=+|-.++.....-+. ++.....+|-..+ -. ++ .+.
T Consensus 120 qYv~~idagstgsr~~iyqfi-dge~~~~~~~~~~n~L~~~l~d~d~~t~-G~~~s~~~l~qiA~~~~p~e~~--r~~-- 193 (549)
T COG5371 120 QYVKMIDAGSTGSRSNIYQFI-DGEIEGQYLWLNTNYLEPGLSDFDTDTV-GFADSGGALLQIAFEFVPSEIR--RCM-- 193 (549)
T ss_pred heecccccCCCccceeEEEee-cCccCcchhhhhhhhhcccccccccccH-HHHhhccHHHHhhhccCCHHHh--hcC--
Confidence 567899999999999999997 5655444333333334444333211122 2222222222221 11 11 232
Q ss_pred cEEEEEehhhhh--cCChHHHHHHHHHHc----------CCcEEEeChHHHHHHHHhhhhccCC----C-C-CCceEEEE
Q 007976 88 HTRAVATAAVRA--AENKDEFVECVREKV----------GFEVDVLTGEQEAKFVYMGVLQFLP----V-F-DRLVLSVD 149 (582)
Q Consensus 88 ~i~~vATsA~R~--A~N~~~fl~~I~~~t----------G~~i~VIsgeEEA~l~~~gv~~~l~----~-~-~~~~lviD 149 (582)
.+.+.||+.+|- -.-...++..++..+ |.-|+|+.|.+|.-|..--....+. . + ...+-|+|
T Consensus 194 pi~~~~taGlrl~Gds~s~~vl~s~r~~l~~n~~f~~y~g~~ieil~G~~Eg~~a~~~m~~~ls~~g~~~~~~~T~~v~d 273 (549)
T COG5371 194 PIIVTATAGLRLLGDSRSDHVLVSTRLGLGANYAFRRYLGDLIEILNGVDEGNLADPCMNRGLSNDGTDAGTHGTGAVVD 273 (549)
T ss_pred cceEEEEeeeeecCccchhhHHHHHHHhhccccccceecccceeeccCccccchhhhhhhhhhccccCCCcccCccccee
Confidence 478899999992 122345666677665 4569999999999666544432221 1 1 23478999
Q ss_pred eCCCceEEEEee
Q 007976 150 IGGGSTEFVIGK 161 (582)
Q Consensus 150 IGGGStEl~~~~ 161 (582)
.|||||+|.+-.
T Consensus 274 ~gg~stqll~~~ 285 (549)
T COG5371 274 CGGGSTQLLLKP 285 (549)
T ss_pred ccCcceeeeecC
Confidence 999999998744
No 59
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.92 E-value=0.059 Score=64.22 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhh
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFH 458 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryh 458 (582)
..+|.+|++|||||+.... +|.+-++.+...--.-+||+.++.. .++.++++|
T Consensus 497 ~~lL~lAaLlHDIGKg~~~-~Hs~~Ga~~a~~i~~rl~l~~~~~~------~v~~LV~~H 549 (895)
T PRK00275 497 PELLYIAGLYHDIGKGRGG-DHSELGAVDAEAFCQRHQLPAWDTR------LVVWLVENH 549 (895)
T ss_pred HHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHH
Confidence 3589999999999998754 7888898877654334799999999 999999999
No 60
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.77 E-value=0.072 Score=63.17 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 400 EYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 400 ~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
.+|.+|++|||||+-... +|.+-++.+...--.=+||+.++.. .++.++++|-.
T Consensus 487 ~lL~lAaLlHDIGKg~~~-dHs~~Ga~~a~~i~~Rl~l~~~~~~------~v~~LV~~Hl~ 540 (869)
T PRK04374 487 ELLLLAGLFHDIAKGRGG-DHSELGAVDARAFCLAHRLSEGDTE------LVTWLVEQHLR 540 (869)
T ss_pred cHHHHHHHHHhccCCCCC-ChHHHhHHHHHHHHHHcCCCHHHHH------HHHHHHHHhhh
Confidence 589999999999998754 7888888877554334699999999 99999999953
No 61
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.58 E-value=0.088 Score=62.52 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
+.+|.+||+|||||+--.. +|.+-++.+...--.-+||+.++.. .++.+++||-.
T Consensus 473 ~~~L~lAaLlHDIGKG~~~-dHs~~Ga~~a~~i~~rl~l~~~~~~------~v~~LV~~Hl~ 527 (854)
T PRK01759 473 RTLLYIAALFHDIAKGRGG-DHAELGAVDMRQFAQQHGFDQREIE------TMAWLVQQHLL 527 (854)
T ss_pred HHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHhhH
Confidence 5689999999999997654 7888888877663324799999999 99999999875
No 62
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.41 E-value=0.1 Score=61.92 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
+.+|.+||+|||||+.-. .+|.+-++.+...--.=+||+.++.. .++.+++||-.
T Consensus 477 ~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~------~V~~LV~~Hl~ 531 (856)
T PRK03059 477 PWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAE------LVVWLVEHHLT 531 (856)
T ss_pred hhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHhch
Confidence 478999999999999765 47888888776553223699999999 99999999963
No 63
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=93.38 E-value=0.43 Score=47.77 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=47.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
++.+|||||.|+|..+++ .+|++ +...+.+......-......+++.+-+.+ ..-++++++.++++..+|.+++
T Consensus 1 y~lgiDiGTts~K~~l~d--~~g~i--v~~~~~~~~~~~~~~g~~e~d~~~~~~~~--~~~~~~~~~~~~~~~~~I~aI~ 74 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFD--EDGKI--VASASRPYPYYTPEPGWAEQDPDEIWEAI--CEALKELLSQAGIDPEQIKAIG 74 (245)
T ss_dssp EEEEEEECSSEEEEEEEE--TTSCE--EEEEEEEETEBCSSTTEEEE-HHHHHHHH--HHHHHHHHHHCTSCGGGEEEEE
T ss_pred CEEEEEEcccceEEEEEe--CCCCE--EEEEEEeeeeccccccccccChHHHHHHH--HHHHHHHHhhcCcccceeEEEE
Confidence 468999999999999998 35654 44444443332221111233444444332 2334555566677778999999
Q ss_pred ehhhhh
Q 007976 94 TAAVRA 99 (582)
Q Consensus 94 TsA~R~ 99 (582)
.++.+.
T Consensus 75 is~~~~ 80 (245)
T PF00370_consen 75 ISGQGH 80 (245)
T ss_dssp EEE-SS
T ss_pred eccccC
Confidence 877654
No 64
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=92.87 E-value=1.6 Score=45.06 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=66.6
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE-EE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-AV 92 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~v 92 (582)
++..|||||-+++.++.+ + + +++.. ....+|.-..++. .+-+.+++++.|.+..++. ++
T Consensus 33 ~~~GIDiGStt~K~Vlld-~--~--~i~~~---------~~~~tg~~~~~~a------~~~l~~~l~~~g~~~~~v~~~~ 92 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-D--G--ELYGY---------NSMRTGNNSPDSA------KNALQGIMDKIGMKLEDINYVV 92 (293)
T ss_pred EEEEEEeCchhEEEEEEe-C--C--EEEEE---------EeecCCCCHHHHH------HHHHHHHHHHcCCcccceEEEE
Confidence 579999999999999996 2 3 23322 2223332223332 2233344455566433444 56
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 007976 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (582)
Q Consensus 93 ATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (582)
+|--=|..- .|.+ ++ -.|----..|+....|. +-..|+||||--+-++.. ++|++.
T Consensus 93 ~TGyGr~~~---~~a~----------~~---v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 93 GTGYGRVNV---PFAH----------KA---ITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred EECcchhhc---chhh----------cc---eeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcCCCcEe
Confidence 776656432 1211 12 24555666777665531 224899999999999987 577654
No 65
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.84 E-value=0.48 Score=45.57 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=38.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHH
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDI 78 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~ 78 (582)
+++|||||.++++++++..++|.++++.....+ ..|+ .+|.+.+ ++.+.+++++..+.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~---s~gi-~~G~I~d--~~~~~~~I~~ai~~ 58 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP---SRGI-RKGVIVD--IEAAARAIREAVEE 58 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec---CCCc-cCcEEEC--HHHHHHHHHHHHHH
Confidence 478999999999999998766789888766554 3343 3455544 33444444444333
No 66
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.80 E-value=0.15 Score=61.19 Aligned_cols=54 Identities=24% Similarity=0.178 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhc
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHR 459 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhr 459 (582)
+.+|.+||+|||||+-- ..+|.+-++.+...--.=+||+.+++. .++.+++||-
T Consensus 530 ~~~L~lAaLlHDIGKg~-~~dHs~~Ga~~a~~~~~rl~l~~~~~~------~v~~LV~~Hl 583 (931)
T PRK05092 530 RRALYVAVLLHDIAKGR-PEDHSIAGARIARRLCPRLGLSPAETE------TVAWLVEHHL 583 (931)
T ss_pred HHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHHh
Confidence 56899999999999975 357888888877554334699999999 9999999995
No 67
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=92.22 E-value=0.32 Score=51.66 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEE--EechHHHHHHh
Q 007976 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCES--VNLGHVSLSEK 181 (582)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~S--lplG~vrl~e~ 181 (582)
+...++||||||+|+++.++++++....| ++.|...+.+.
T Consensus 184 ~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~ 225 (344)
T PRK13917 184 EGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKR 225 (344)
T ss_pred cCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHH
Confidence 34579999999999999999999976665 99999888764
No 68
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.20 E-value=0.19 Score=59.84 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 399 LEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 399 ~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
+.+|.+||+|||||+-- ..+|.+-++.+..+--.=+||+.++.. .++.+++||-.
T Consensus 465 ~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl~l~~~~~~------~v~~LV~~Hl~ 519 (850)
T TIGR01693 465 PELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRLGLDRPDTE------LVAWLVRNHLL 519 (850)
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHHHH
Confidence 57899999999999964 457888898887653223699999999 99999999964
No 69
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=92.09 E-value=0.23 Score=54.01 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccccc-------CCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 400 EYLEAACLLHNIGHFT-------SKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 400 ~LL~~Aa~LHdIG~~I-------~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
..|.+||+|||+|+.. ++++|.+-++.++..--.=++++.+.+. .+..+++||-.
T Consensus 246 l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~------~~~~lv~~H~~ 307 (409)
T PRK10885 246 LDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRD------LALLVAEEHDN 307 (409)
T ss_pred HHHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHH------HHHHHHHHhhc
Confidence 3689999999999976 4557888888877553223699999999 89999999964
No 70
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=91.53 E-value=3.5 Score=44.21 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=56.4
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 007976 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (582)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (582)
.++++.+..++-|..... ..-++.+++-+.+..|++ +-+++ ++.++.++.- ...++|||+|.++|.++-
T Consensus 88 l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~---~~~~a~~~~g------~~tglVVD~G~~~t~v~p 158 (393)
T PF00022_consen 88 LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIP---SPLLALYASG------RTTGLVVDIGYSSTSVVP 158 (393)
T ss_dssp T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEE---HHHHHHHHTT------BSSEEEEEESSS-EEEEE
T ss_pred cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeee---cccccccccc------cccccccccceeeeeeee
Confidence 355555566666654332 233466777788888876 33444 3333333321 235899999999999999
Q ss_pred eeCCeEEE--EEEEechHHHHHHhh
Q 007976 160 GKRGKVVF--CESVNLGHVSLSEKF 182 (582)
Q Consensus 160 ~~~~~~~~--~~SlplG~vrl~e~f 182 (582)
+-+|.++. ...+|+|.-.+++.+
T Consensus 159 V~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 159 VVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp EETTEE-GGGBEEES-SHHHHHHHH
T ss_pred eeeccccccccccccccHHHHHHHH
Confidence 99998864 567899998888754
No 71
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=91.35 E-value=0.24 Score=49.19 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCC---chhhhHHHHHcC
Q 007976 360 VKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKG---YHKQSCHIIMNG 431 (582)
Q Consensus 360 ~~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~---h~kHS~yiI~ns 431 (582)
..|+..|+.+|..| +...|. +-.+...||+|||||..+-+.. |..=++-+...-
T Consensus 38 l~H~~~Va~lA~~I----a~~~g~--------------D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~ 94 (222)
T COG1418 38 LEHSLRVAYLAYRI----AEEEGV--------------DPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKF 94 (222)
T ss_pred HHHHHHHHHHHHHH----HHHcCC--------------CHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHH
Confidence 48999999999975 443332 3479999999999999998874 555555555443
No 72
>PTZ00281 actin; Provisional
Probab=91.13 E-value=0.87 Score=48.91 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=60.5
Q ss_pred HcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEE
Q 007976 81 SHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI 159 (582)
Q Consensus 81 ~~~v~~~~i~~vATsA~-R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~ 159 (582)
..++++.+..++-|+.. --..+++.+.+-+.+..+++-=-+ ...+.++.++. ....++|||+|-++|.++-
T Consensus 94 ~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~--~~~~~ls~ya~------g~~tglVVDiG~~~t~v~P 165 (376)
T PTZ00281 94 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQAVLSLYAS------GRTTGIVMDSGDGVSHTVP 165 (376)
T ss_pred hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEe--eccHHHHHHhc------CCceEEEEECCCceEEEEE
Confidence 34666555556666543 334556677777788777763222 22233333321 2245899999999999998
Q ss_pred eeCCeEE--EEEEEechHHHHHHhh
Q 007976 160 GKRGKVV--FCESVNLGHVSLSEKF 182 (582)
Q Consensus 160 ~~~~~~~--~~~SlplG~vrl~e~f 182 (582)
+-+|.+. ....+++|.-.+++.+
T Consensus 166 V~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 166 IYEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred EEecccchhheeeccCcHHHHHHHH
Confidence 8888776 4566788888777755
No 73
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.13 E-value=1.2 Score=45.22 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=64.2
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcc-EEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDH-TRAV 92 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~-i~~v 92 (582)
.++.||+||-+++.++.+.+ ++.+..+.....+++ +.=+.++ +-++ |.+++++.|++..+ ..++
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~~~--------~~~~~~~---~~~~---l~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDRIR--------QRDPFKL---AEDA---YDDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEecCC--------CCCHHHH---HHHH---HHHHHHHcCCChhheEEEE
Confidence 37899999999999999742 222333322211111 1111222 2233 33444456663223 3456
Q ss_pred EehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe-eCCeEE
Q 007976 93 ATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG-KRGKVV 166 (582)
Q Consensus 93 ATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~-~~~~~~ 166 (582)
+|--=|.. .|.+ +.-. |-.--..|+....| +. ..|+||||--+-++.. ++|++.
T Consensus 67 ~TGYGR~~----~~a~------~~vt-------EIt~ha~GA~~~~p--~~-~tIiDIGGQD~K~I~~~~~G~v~ 121 (262)
T TIGR02261 67 TTGEGESL----AFHT------GHFY-------SMTTHARGAIYLNP--EA-RAVLDIGALHGRAIRMDERGKVE 121 (262)
T ss_pred EECCchhh----hhhc------CCee-------EEeHHHHHHHHHCC--CC-CEEEEeCCCceEEEEEcCCCcEe
Confidence 67654543 2221 1111 34445566665444 22 4999999999999887 467664
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=90.78 E-value=1.4 Score=51.90 Aligned_cols=84 Identities=18% Similarity=0.092 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhccccc-------------------------
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFT------------------------- 415 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I------------------------- 415 (582)
+|...|+++|..+ ++.+|+. ....++++|++|||+|++-
T Consensus 678 eHl~~va~lA~~f----a~~~gl~------------~~~~~~~laGllHDlGK~~~~FQ~yL~~~~~p~~~~~~~~~~~~ 741 (844)
T TIGR02621 678 DHLDNVFEVAKNF----VAKLGLG------------DLDKAVRQAARLHDLGKQRPRFQTMLGNRSYPLAKLAKSGPWAA 741 (844)
T ss_pred HHHHHHHHHHHHH----HHHcCch------------HHHHHHHHHHHhcccccCCHHHHHHhcCCCCccccccccccchh
Confidence 6888888888763 4444431 1235689999999999973
Q ss_pred ----CCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCC
Q 007976 416 ----SKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRS 465 (582)
Q Consensus 416 ----~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~ 465 (582)
..+.|-.+|..-+.|.+....+++.++. +++=+|+.+|+...|-.
T Consensus 742 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~-----lvl~liaaHHg~~rp~~ 790 (844)
T TIGR02621 742 KIARSMYRHEKGSLIDVANAPGFSMLSEELSD-----LVLHLVATHHGRNRPHF 790 (844)
T ss_pred hhhhhhhcCCchhHHhhhccccccccChhHHH-----HHHHHHHHhccCCCCCC
Confidence 3456777777777776545667777877 37777788888877653
No 75
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=90.72 E-value=0.82 Score=43.73 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.0
Q ss_pred HHHHHHHhhcccccC-----------CCCchhhhHHHHHc
Q 007976 402 LEAACLLHNIGHFTS-----------KKGYHKQSCHIIMN 430 (582)
Q Consensus 402 L~~Aa~LHdIG~~I~-----------~~~h~kHS~yiI~n 430 (582)
+-+||+|||||..++ ..+|..-++.+|..
T Consensus 46 lvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~ 85 (179)
T TIGR03276 46 LIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRE 85 (179)
T ss_pred HHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHH
Confidence 689999999999887 34455666777754
No 76
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=89.79 E-value=1.4 Score=47.52 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE-E
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR-A 91 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~-~ 91 (582)
..+..||+||.|++.++.+ ++ +++.....+ ++ ...+.+.++++ +.+++.|++..++. +
T Consensus 144 g~~lGIDiGSTttK~Vl~d---d~--~Ii~~~~~~---------t~----~~~~~a~~~l~---~~l~~~Gl~~~di~~i 202 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME---DN--EVIGTGWVP---------TT----KVIESAEEAVE---RALEEAGVSLEDVEAI 202 (404)
T ss_pred CEEEEEEcChhheeeEEEc---CC--eEEEEEEee---------cc----cHHHHHHHHHH---HHHHHcCCCccceeEE
Confidence 3689999999999999985 33 455432221 11 11223333333 44555676544554 4
Q ss_pred EEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE
Q 007976 92 VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV 166 (582)
Q Consensus 92 vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~ 166 (582)
++|--=|. .+.. ..|.+.- .+|---...|+..-.|.......|+||||--...+..++|++.
T Consensus 203 ~~TGyGR~------~i~~---~~~ad~i----v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 203 GTTGYGRF------TIGE---HFGADLI----QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred EeeeecHH------HHhh---hcCCCce----EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCcee
Confidence 45544343 2221 1222200 1233344556655444212236999999988888877777653
No 77
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=89.62 E-value=0.63 Score=48.80 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=45.6
Q ss_pred cEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEE--EEEEechHHHHHHhh
Q 007976 117 EVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSEKF 182 (582)
Q Consensus 117 ~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e~f 182 (582)
+|.|+....=|.+.++-=-......+...+||||||++|.++.++++++.. +.|++.|+..+.+..
T Consensus 141 ~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I 208 (320)
T TIGR03739 141 KVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLL 208 (320)
T ss_pred EEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHH
Confidence 356777666666655421001111345689999999999999999998865 456899998888754
No 78
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=89.39 E-value=3.3 Score=45.00 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=71.3
Q ss_pred EEEEecccceEEEEEEEeCCCC-EEEEEeeeeeeeeccCCCcC--CCCCHHHHHH----HHHHHHH-HHHHHHHcCCCCc
Q 007976 16 ASIDMGTSSFKLLIIRAYPNGK-FLTIDTLKQPVILGRDLSSS--CSISTQSQAR----SVESLLM-FRDIIQSHNISRD 87 (582)
Q Consensus 16 AvIDIGSNSiRL~I~e~~~~~~-~~~l~~~k~~vrLg~g~~~~--g~Ls~e~i~r----~~~~L~~-f~~~~~~~~v~~~ 87 (582)
.+|||||.++.+.+++.. +|. +...-..+-....|.++-.. -..+++..++ +++.+.+ ..++|.+.|++++
T Consensus 4 iAvDiGTTti~~~L~dl~-~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~ 82 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLE-TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISPE 82 (412)
T ss_dssp EEEEE-SSEEEEEEEETT-T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--GG
T ss_pred EEEEcchhheeeEEEECC-CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 589999999999999986 454 33333344445677776421 0012222222 2334444 3455666687766
Q ss_pred cE---EEEEehhh------------hhcCChHHHHHHH---HHHcCC------cEEEeC---hHHHHHHHHhhhh-ccCC
Q 007976 88 HT---RAVATAAV------------RAAENKDEFVECV---REKVGF------EVDVLT---GEQEAKFVYMGVL-QFLP 139 (582)
Q Consensus 88 ~i---~~vATsA~------------R~A~N~~~fl~~I---~~~tG~------~i~VIs---geEEA~l~~~gv~-~~l~ 139 (582)
+| .+++-.+| ..++=...|.+.. -.++|+ +|.++. |--=+-.. .|+. ..+.
T Consensus 83 ~I~~i~i~GNt~M~hLllGl~~~~L~~~Pf~p~~~~~~~~~a~~lgl~~~~~~~v~~~P~i~~fVG~Div-Agl~a~~~~ 161 (412)
T PF14574_consen 83 DIYEIVIVGNTTMLHLLLGLDPEGLGRAPFVPVFRGGVEIPAAELGLEINPDARVYILPNISGFVGADIV-AGLLATGMD 161 (412)
T ss_dssp GEEEEEEEE-HHHHHHHHT---GGGSSTTT--S-S----EEHHHHT-SS-TTSEEEE----BTTB-HHHH-HHHHHHTCC
T ss_pred HeEEEEEEecHHHHHHHcCCChHHhccCCcccccCCCcEEeHHHhCcccCCCCEEEEcCcccccccHHHH-HHHHhcCcc
Confidence 55 34454444 2222111121111 122354 333322 21111111 1111 1233
Q ss_pred CCCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHH
Q 007976 140 VFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (582)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (582)
..+++.|++|||. +.|++++.++++ ++.|-|-|+.
T Consensus 162 ~~~~~~LliDiGT-NgEivL~~~~~~-~a~S~AAGPA 196 (412)
T PF14574_consen 162 ESDEPSLLIDIGT-NGEIVLGNGGKL-LACSTAAGPA 196 (412)
T ss_dssp C-SS-EEEEEESS-CEEEEEE-SS-E-EEEEEE--TC
T ss_pred cCCCcEEEEEecC-CeEEEEecCCEE-EEEeccCChh
Confidence 3456799999987 789999999776 5779999985
No 79
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=88.89 E-value=0.45 Score=50.47 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCC------------------CCchh
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSK------------------KGYHK 422 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~------------------~~h~k 422 (582)
.|+.+|+.+|..| .+..|+ ++...+.|.+||+|||||+--=+ +.|..
T Consensus 151 ~Hs~~va~~a~~i----a~~lgl-----------~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~ 215 (344)
T COG2206 151 GHSVRVAELAEAI----AKKLGL-----------SEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPI 215 (344)
T ss_pred HHHHHHHHHHHHH----HHHcCC-----------CHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchH
Confidence 6999999999874 444443 45566899999999999985332 34555
Q ss_pred hhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhccccCCC
Q 007976 423 QSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQNDCVN 501 (582)
Q Consensus 423 HS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~~~~ 501 (582)
.|+.++.+.+ -+.. .+..++.+|+-...-. -+...|..++ +-..|.|+-+|+..|.-....
T Consensus 216 ~g~~iL~~~~---~~~~----------~~~~~~l~HHEr~DGt--GYP~GL~Gee---I~l~aRIiAVADvydAlts~R 276 (344)
T COG2206 216 YGYDILKDLP---EFLE----------SVRAVALRHHERWDGT--GYPRGLKGEE---IPLEARIIAVADVYDALTSDR 276 (344)
T ss_pred HHHHHHHhcc---cccH----------HHHHHHHHhhhccCCC--CCCCCCCccc---CChHhHHHHHhhHHHHHhcCC
Confidence 5555554442 2222 2333444455444331 1122444333 445778888898887655433
No 80
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.63 E-value=9.3 Score=39.62 Aligned_cols=144 Identities=16% Similarity=0.080 Sum_probs=85.2
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (582)
..+..||||.+++++.+++.. |. ++.+.+.++.- .. -.++.++...+.++++.+... ....+..|
T Consensus 6 ~~~lgidIggt~i~~~l~d~~--g~--~l~~~~~~~~~--~~-----~~~~~~~~i~~~i~~~~~~~~----~~~~~iGI 70 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLD--GE--ILLRERIPTPT--PD-----PEEAILEAILALVAELLKQAQ----GRVAIIGI 70 (314)
T ss_pred cEEEEEEecCCEEEEEEECCC--Cc--EEEEEEEecCC--CC-----chhHHHHHHHHHHHHHHHhcC----CcCceEEE
Confidence 358999999999999999764 43 33333333211 10 114667777777777776432 11234445
Q ss_pred Eehhhhh---------cC-----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 007976 93 ATAAVRA---------AE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (582)
Q Consensus 93 ATsA~R~---------A~-----N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (582)
+-+.--. +. +...|.+.+++.+|++|.|-+...=+-+.-.=.-.. ...++.+.+-+|-| +.-.
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG-IG~g 147 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAG--RGIDDVVYITLGTG-IGGG 147 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc-eeEE
Confidence 4332211 21 225589999999999999988766555543211111 12245788888876 4455
Q ss_pred EeeCCeEEEEEEEech
Q 007976 159 IGKRGKVVFCESVNLG 174 (582)
Q Consensus 159 ~~~~~~~~~~~SlplG 174 (582)
++-+|++....+..-|
T Consensus 148 iv~~g~l~~G~~g~ag 163 (314)
T COG1940 148 IIVNGKLLRGANGNAG 163 (314)
T ss_pred EEECCEEeecCCCccc
Confidence 6667777665444333
No 81
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=88.24 E-value=0.87 Score=43.66 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC----------------------
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK---------------------- 418 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~---------------------- 418 (582)
+|...|+++|.+ |++.++++. .-...|++|||++.+....
T Consensus 20 ~H~l~V~~~A~~----LA~~y~~d~--------------~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~~~~~~l 81 (187)
T COG1713 20 EHCLGVAETAIE----LAEAYGLDP--------------EKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLERESPLL 81 (187)
T ss_pred HHHHHHHHHHHH----HHHHhCCCH--------------HHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhhccChHH
Confidence 688888888886 566665422 2278888888888765422
Q ss_pred CchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcCCCCCCCchhhcCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 007976 419 GYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRKKFPRSHHAFLEEFPEQAKQKFRVLCAIVRLSVILQQND 498 (582)
Q Consensus 419 ~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk~~~~~~~~~~~~L~~~~~~~v~kL~~iLRlA~~Ld~s~ 498 (582)
=|.+-++|++.+- +|+..+|.. .-++||--..+. +..|..|+=+|+.+.-+|
T Consensus 82 lH~~vgay~~~~~---fGi~De~VL---------~AI~~HTtg~~~----------------mt~ldkIiyiAD~iEp~R 133 (187)
T COG1713 82 LHGKVGAYLLKEE---FGIKDEEVL---------SAIEYHTTGRKQ----------------MTLLDKILYVADKIEPGR 133 (187)
T ss_pred HHHHHHHHHHHHH---hCCCcHHHH---------HHHHHhccCCCc----------------cchhhheeeeeccccCCC
Confidence 1455677888765 589888855 345677643322 223445666666665555
Q ss_pred C
Q 007976 499 C 499 (582)
Q Consensus 499 ~ 499 (582)
.
T Consensus 134 ~ 134 (187)
T COG1713 134 G 134 (187)
T ss_pred C
Confidence 4
No 82
>CHL00094 dnaK heat shock protein 70
Probab=87.66 E-value=5.9 Score=45.55 Aligned_cols=70 Identities=23% Similarity=0.394 Sum_probs=45.7
Q ss_pred HHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEE-----EEEEEechHHHHHH
Q 007976 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVV-----FCESVNLGHVSLSE 180 (582)
Q Consensus 107 l~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~SlplG~vrl~e 180 (582)
+...-+..|+++ ++|+...=|-+.| |.-. . .+...+|+|+|||++.+++++-+... .....++|.-.+.+
T Consensus 154 ~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~ 229 (621)
T CHL00094 154 TKDAGKIAGLEVLRIINEPTAASLAY-GLDK--K-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDK 229 (621)
T ss_pred HHHHHHHcCCceEEEeccHHHHHHHh-cccc--C-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHH
Confidence 344455679995 6888888888776 3221 1 23568999999999999987643221 12345677655554
No 83
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=87.36 E-value=7.6 Score=44.47 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhh
Q 007976 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVL 135 (582)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~ 135 (582)
.++++.+ +...|+.+++.++.+ |.+.. .+|-| -|-= -.+....+..+-+..|+++ ++|+...=|-+.| |.-
T Consensus 103 ~~~p~ei--~a~iL~~lk~~a~~~lg~~v~--~~VItVPa~f-~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~ 176 (599)
T TIGR01991 103 TVTPVEV--SAEILKKLKQRAEESLGGDLV--GAVITVPAYF-DDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY-GLD 176 (599)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcc--eEEEEECCCC-CHHHHHHHHHHHHHcCCCceEEecCHHHHHHHH-hhc
Confidence 4555433 345677777766554 43322 33432 1111 1123334555666789997 6888888887776 332
Q ss_pred ccCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEechHHHHHHhh
Q 007976 136 QFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSEKF 182 (582)
Q Consensus 136 ~~l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e~f 182 (582)
.. .+...+|+|+|||++.+++++ ++.+. .....++|..-+.+.+
T Consensus 177 ~~---~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l 225 (599)
T TIGR01991 177 KA---SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225 (599)
T ss_pred cC---CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 21 235689999999999999876 44332 1122477876666543
No 84
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=87.29 E-value=0.93 Score=49.16 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccccc---------CCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhcC
Q 007976 400 EYLEAACLLHNIGHFT---------SKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHRK 460 (582)
Q Consensus 400 ~LL~~Aa~LHdIG~~I---------~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhrk 460 (582)
..+++||+|||+|+.. ++++|.+.|..++..--.=+.++.+.+. .+..+++||..
T Consensus 247 l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~------~~~~li~~H~~ 310 (417)
T PRK13298 247 IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRN------IAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHH------HHHHHHHHHhh
Confidence 4689999999999853 4567778888777543223689999999 99999999965
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=0.48 Score=54.51 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcccccCCCCchhhhHHHHHcCCCCCCCCHHHHhhhhhHHHHHHHHHhhc
Q 007976 398 DLEYLEAACLLHNIGHFTSKKGYHKQSCHIIMNGDHLYGYSTDEIKHLVCLQLIALLTRFHR 459 (582)
Q Consensus 398 ~~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI~ns~~l~G~s~~E~~~~~~~~~iA~iaryhr 459 (582)
++.+|.+||++||||+-= ...|..-++-....-=.-.|++.+|.. ++|.+++.|=
T Consensus 482 ~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~hGL~~~e~~------lvaWLVe~HL 536 (867)
T COG2844 482 KRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCERHGLNSRETE------LVAWLVENHL 536 (867)
T ss_pred ChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHHcCCCHHHhH------HHHHHHHHHH
Confidence 457999999999999875 445677777666432225799999999 9999999873
No 86
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.87 E-value=0.71 Score=41.09 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTI 41 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l 41 (582)
+++|||||.++.+.|++....+.++++
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl 27 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVL 27 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEE
Confidence 589999999999999987544444444
No 87
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=86.08 E-value=12 Score=35.18 Aligned_cols=129 Identities=18% Similarity=0.082 Sum_probs=82.4
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE---
Q 007976 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA--- 93 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA--- 93 (582)
.||||.+++++.+++.. | +++.+.+.++. . -.++.++...+.++++..... .. -..||
T Consensus 1 gidig~~~i~~~l~d~~--g--~ii~~~~~~~~--~-------~~~~~~~~l~~~i~~~~~~~~---~~---gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD--G--EIIYSESIPTP--T-------SPEELLDALAELIERLLADYG---RS---GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT--S--CEEEEEEEEHH--S-------SHHHHHHHHHHHHHHHHHHHT---CE---EEEEEESS
T ss_pred CEEECCCEEEEEEECCC--C--CEEEEEEEECC--C-------CHHHHHHHHHHHHHHHHhhcc---cc---cEEEeccc
Confidence 48999999999999864 4 45666666654 1 135666666677777665443 11 12222
Q ss_pred ----------ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 007976 94 ----------TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (582)
Q Consensus 94 ----------TsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~ 163 (582)
++..-.-.| -.+.+.+++.++++|.+.+.-.=+-+...-.-... ..++.+.+.+|-| +...++.+|
T Consensus 62 ~v~~~~g~i~~~~~~~~~~-~~l~~~l~~~~~~pv~i~Nd~~~~a~ae~~~~~~~--~~~~~~~l~ig~G-iG~~ii~~g 137 (179)
T PF00480_consen 62 IVDSEKGRIISSPNPGWEN-IPLKEELEERFGVPVIIENDANAAALAEYWFGAAK--DCDNFLYLYIGTG-IGAGIIING 137 (179)
T ss_dssp EEETTTTEEEECSSGTGTT-CEHHHHHHHHHTSEEEEEEHHHHHHHHHHHHSTTT--TTSSEEEEEESSS-EEEEEEETT
T ss_pred cCcCCCCeEEecCCCCccc-CCHHHHhhcccceEEEEecCCCcceeehhhcCccC--CcceEEEEEeecC-CCcceeccc
Confidence 222222333 45788899999999999988776555543222221 2246899999886 677778888
Q ss_pred eEEEE
Q 007976 164 KVVFC 168 (582)
Q Consensus 164 ~~~~~ 168 (582)
++...
T Consensus 138 ~i~~G 142 (179)
T PF00480_consen 138 KIYRG 142 (179)
T ss_dssp EEETT
T ss_pred ccccC
Confidence 88754
No 88
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=85.80 E-value=5.1 Score=46.12 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 007976 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~ 145 (582)
...|+..++.++.+ |-+.. .+|-| -|-=.. +....+...-+..|+++ ++|+...=|.+.| |.... .+...
T Consensus 115 a~iL~~lk~~ae~~~g~~v~--~~VItVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~---~~~~v 187 (627)
T PRK00290 115 AMILQKLKKDAEDYLGEKVT--EAVITVPAYFND-AQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKK---GDEKI 187 (627)
T ss_pred HHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEecchHHHHHHh-hhccC---CCCEE
Confidence 34566666665554 43322 23332 221111 12223444455679995 6888888777766 33221 34668
Q ss_pred EEEEeCCCceEEEEeeC
Q 007976 146 LSVDIGGGSTEFVIGKR 162 (582)
Q Consensus 146 lviDIGGGStEl~~~~~ 162 (582)
+|+|+|||+|.+++++-
T Consensus 188 lV~D~GggT~dvsv~~~ 204 (627)
T PRK00290 188 LVYDLGGGTFDVSILEI 204 (627)
T ss_pred EEEECCCCeEEEEEEEE
Confidence 99999999999988653
No 89
>PRK11678 putative chaperone; Provisional
Probab=85.44 E-value=9.2 Score=42.17 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHc-CCCCccEEEEEehhh--h----hcCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhccCC
Q 007976 70 ESLLMFRDIIQSH-NISRDHTRAVATAAV--R----AAENK--DEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQFLP 139 (582)
Q Consensus 70 ~~L~~f~~~~~~~-~v~~~~i~~vATsA~--R----~A~N~--~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~l~ 139 (582)
..|+.+++.++.+ |.+.. .+|-|-=. . ...|+ ..++....+..|++ +++++...=|-+.| |. .++
T Consensus 132 ~iL~~lk~~ae~~~g~~v~--~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y-~~--~~~ 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAIT--QAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF-EA--TLT 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCC--cEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHh-cc--ccC
Confidence 3456666666543 54322 34544222 2 13333 24566777788998 57899888888877 32 222
Q ss_pred CCCCceEEEEeCCCceEEEEee
Q 007976 140 VFDRLVLSVDIGGGSTEFVIGK 161 (582)
Q Consensus 140 ~~~~~~lviDIGGGStEl~~~~ 161 (582)
.++..+|+|+|||++.+++.+
T Consensus 207 -~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 207 -EEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred -CCCeEEEEEeCCCeEEEEEEE
Confidence 245689999999999998875
No 90
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=85.22 E-value=9.5 Score=44.18 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhcc
Q 007976 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQF 137 (582)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~ 137 (582)
++++-+.. ..|+..++.+++| |.+.. .+|-|--.---.+....+...-+..|+++ ++|+...=|-+.|. .-.
T Consensus 135 ~speeisa--~iL~~Lk~~Ae~~lg~~v~--~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg-~~~- 208 (657)
T PTZ00186 135 YSPSQIGA--FVLEKMKETAENFLGHKVS--NAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG-MDK- 208 (657)
T ss_pred EcHHHHHH--HHHHHHHHHHHHHhCCccc--eEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHh-ccC-
Confidence 45544433 2355555555554 43322 33333111111223334555566789996 69999988888773 221
Q ss_pred CCCCCCceEEEEeCCCceEEEEee--CCeE
Q 007976 138 LPVFDRLVLSVDIGGGSTEFVIGK--RGKV 165 (582)
Q Consensus 138 l~~~~~~~lviDIGGGStEl~~~~--~~~~ 165 (582)
. .+...+|+|+|||++.+++++ +|.+
T Consensus 209 -~-~~~~vlV~DlGGGT~DvSil~~~~g~~ 236 (657)
T PTZ00186 209 -T-KDSLIAVYDLGGGTFDISVLEIAGGVF 236 (657)
T ss_pred -C-CCCEEEEEECCCCeEEEEEEEEeCCEE
Confidence 1 245689999999999999876 5544
No 91
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=84.46 E-value=6.8 Score=44.57 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEechHHHHH
Q 007976 106 FVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLS 179 (582)
Q Consensus 106 fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~ 179 (582)
.+...-+..|+++ ++|+..+=|-+.| ++.... .+...+|+|+|||++.+++++ ++.+. ...+-.+|...+.
T Consensus 153 ~~~~Aa~~agl~~~~li~Ep~Aaa~~y-~~~~~~--~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D 229 (602)
T PF00012_consen 153 ALRDAAELAGLNVLRLINEPTAAALAY-GLERSD--KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFD 229 (602)
T ss_dssp HHHHHHHHTT-EEEEEEEHHHHHHHHT-TTTSSS--SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHH
T ss_pred cccccccccccccceeecccccccccc-cccccc--cccceeccccccceEeeeehhcccccccccccccccccccceec
Confidence 4444455689987 5777665554443 433322 345689999999999998764 55442 2234567766665
Q ss_pred Hh
Q 007976 180 EK 181 (582)
Q Consensus 180 e~ 181 (582)
+.
T Consensus 230 ~~ 231 (602)
T PF00012_consen 230 EA 231 (602)
T ss_dssp HH
T ss_pred ce
Confidence 43
No 92
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=84.25 E-value=10 Score=43.59 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhh
Q 007976 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVL 135 (582)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~ 135 (582)
.++++. -....|+..++.++.+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|-+.| |.-
T Consensus 123 ~~~p~e--i~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~ 196 (616)
T PRK05183 123 LKSPVE--VSAEILKALRQRAEETLGGELD--GAVITVPAYFD-DAQRQATKDAARLAGLNVLRLLNEPTAAAIAY-GLD 196 (616)
T ss_pred eEcHHH--HHHHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-HHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-hcc
Confidence 344443 2344667777766654 43222 33322 22111 122334455566789997 6888888887776 332
Q ss_pred ccCCCCCCceEEEEeCCCceEEEEee--CCeEE---EEEEEechHHHHHH
Q 007976 136 QFLPVFDRLVLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (582)
Q Consensus 136 ~~l~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (582)
. . .+...+|+|+|||++.+++++ ++.+. ....-.+|..-+.+
T Consensus 197 ~--~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~ 243 (616)
T PRK05183 197 S--G-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDH 243 (616)
T ss_pred c--C-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHH
Confidence 1 1 235689999999999999876 44321 11223566655544
No 93
>PRK13321 pantothenate kinase; Reviewed
Probab=84.16 E-value=22 Score=35.94 Aligned_cols=130 Identities=16% Similarity=0.249 Sum_probs=68.6
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+-+||||-.++++.+++ . + +++.+.+.++....+ + + +.+....++++.++.+..++..++-
T Consensus 2 iL~IDIGnT~ik~gl~~-~--~--~i~~~~~~~T~~~~~--------~---~---~~~~~l~~l~~~~~~~~~~i~~i~v 62 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G--D--RLLRSFRLPTDKSRT--------S---D---ELGILLLSLFRHAGLDPEDIRAVVI 62 (256)
T ss_pred EEEEEECCCeEEEEEEE-C--C--EEEEEEEEecCCCCC--------H---H---HHHHHHHHHHHHcCCChhhCCeEEE
Confidence 35799999999999996 2 2 345444333222111 1 1 1233333444445543334555555
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcEEEeChH-----HHHH-----------HHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 007976 95 AAVRAAENKDEFVECVREKVGFEVDVLTGE-----QEAK-----------FVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (582)
Q Consensus 95 sA~R~A~N~~~fl~~I~~~tG~~i~VIsge-----EEA~-----------l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (582)
+.+..+. ...+.+.+.+..+.++.+++.. +.+| ....|+....+ .++.+|+|.|..-|==.
T Consensus 63 ssVvp~~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~~P~~lG~DR~a~~~aa~~~~~--~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 63 SSVVPPL-NYSLESACKRYFGIKPLFVGPGIKTGLKIRYDNPREVGADRIVNAVAARRLYP--DRNLIVVDFGTATTFDC 139 (256)
T ss_pred EeecccH-HHHHHHHHHHHhCCCeEEECCCCCCCcccccCChhhccHHHHHHHHHHHHHcC--CCCEEEEECCCceEEEE
Confidence 5566543 4456655666667777665322 1111 22222222222 23689999999988655
Q ss_pred EeeCCeEE
Q 007976 159 IGKRGKVV 166 (582)
Q Consensus 159 ~~~~~~~~ 166 (582)
+-.+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 54454443
No 94
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=84.11 E-value=3.2 Score=46.60 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=44.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
++.+||+||.|+|..+++. +|+. +.....+...-......| +..++. .+.+++++++ ++++.+++..+|.
T Consensus 4 ~~lgID~GTts~Ka~l~d~--~G~~--l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~---~~~~~~~~~~~I~ 76 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDL--NGNQ--IAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQ---ALQKAGIPASDIA 76 (520)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHH---HHHHcCCCccceE
Confidence 6889999999999999974 4543 333332221111111122 334444 3444555544 4444566656799
Q ss_pred EEEehhhh
Q 007976 91 AVATAAVR 98 (582)
Q Consensus 91 ~vATsA~R 98 (582)
+++.++.+
T Consensus 77 aI~~s~~~ 84 (520)
T PRK10939 77 AVSATSMR 84 (520)
T ss_pred EEEEECCc
Confidence 99877653
No 95
>PRK13410 molecular chaperone DnaK; Provisional
Probab=83.80 E-value=12 Score=43.59 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 007976 59 SISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (582)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~ 136 (582)
.++++.+ +...|+..++.++.+ |.+..+ .+++--|.=...-++ .+...-+..|+++ ++|+...=|-+.| |.-.
T Consensus 109 ~~speel--~a~iL~~lk~~ae~~lg~~v~~-~VITVPa~f~~~qR~-a~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~ 183 (668)
T PRK13410 109 EFAPEEL--SAMILRKLADDASRYLGEPVTG-AVITVPAYFNDSQRQ-ATRDAGRIAGLEVERILNEPTAAALAY-GLDR 183 (668)
T ss_pred EEcHHHH--HHHHHHHHHHHHHHHhCCCcce-EEEEECCCCCHHHHH-HHHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 3455433 334566666666554 433222 222222211111122 3344455679994 5899988888876 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 007976 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (582)
Q Consensus 137 ~l~~~~~~~lviDIGGGStEl~~~~ 161 (582)
. .+...+|+|+|||++.+++++
T Consensus 184 --~-~~~~vlV~DlGgGT~Dvsv~~ 205 (668)
T PRK13410 184 --S-SSQTVLVFDLGGGTFDVSLLE 205 (668)
T ss_pred --C-CCCEEEEEECCCCeEEEEEEE
Confidence 1 235689999999999998876
No 96
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=83.77 E-value=7.2 Score=44.55 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 007976 69 VESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~ 145 (582)
...|+..++.+..+ |-+.. .+|-| -|.=. .+....+...-+..|+++ ++|+...=|-+.| |.... ..+...
T Consensus 112 a~~L~~l~~~a~~~~~~~v~--~~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y-~~~~~--~~~~~v 185 (595)
T TIGR02350 112 AMILQKLKKDAEAYLGEKVT--EAVITVPAYFN-DAQRQATKDAGKIAGLEVLRIINEPTAAALAY-GLDKS--KKDEKI 185 (595)
T ss_pred HHHHHHHHHHHHHHhCCCCC--eEEEEECCCCC-HHHHHHHHHHHHHcCCceEEEecchHHHHHHH-hhccc--CCCcEE
Confidence 34566666665554 43322 22332 11111 122233444555679996 6788877777766 43221 124568
Q ss_pred EEEEeCCCceEEEEee
Q 007976 146 LSVDIGGGSTEFVIGK 161 (582)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (582)
+|+|+|||++.+++.+
T Consensus 186 lV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 186 LVFDLGGGTFDVSILE 201 (595)
T ss_pred EEEECCCCeEEEEEEE
Confidence 9999999999998865
No 97
>PRK13318 pantothenate kinase; Reviewed
Probab=82.99 E-value=14 Score=37.39 Aligned_cols=128 Identities=13% Similarity=0.191 Sum_probs=66.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+-+||||-..+++.+++ ++. ++++.+.++.... +++. .+..+.++++.++.+..++..++=
T Consensus 2 iL~IDIGnT~iK~al~d---~g~--i~~~~~~~t~~~~--------~~~~------~~~~l~~l~~~~~~~~~~i~~I~i 62 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE---GGK--LVAHWRISTDSRR--------TADE------YGVWLKQLLGLSGLDPEDITGIII 62 (258)
T ss_pred EEEEEECCCcEEEEEEE---CCE--EEEEEEEeCCCCC--------CHHH------HHHHHHHHHHHcCCCcccCceEEE
Confidence 45799999999999997 243 4444333322111 1222 223344455666653234555665
Q ss_pred hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHH-----------------HHHHhhhhccCCCCCCceEEEEeCCCceE
Q 007976 95 AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEA-----------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTE 156 (582)
Q Consensus 95 sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA-----------------~l~~~gv~~~l~~~~~~~lviDIGGGStE 156 (582)
+.+....+ +.+.+.++...+.++ -+.+ .++. .....|+....+ ++.+|+|.|.+-|=
T Consensus 63 ssVvp~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~gl~~~y~np~~lG~DR~a~~~aa~~~~~---~~~ivid~GTA~t~ 137 (258)
T PRK13318 63 SSVVPSVM-HSLERMCRKYFNIEPLVVVG-PGVKTGINIKVDNPKEVGADRIVNAVAAYELYG---GPLIVVDFGTATTF 137 (258)
T ss_pred EEecCchH-HHHHHHHHHHhCCCCeEEEC-CCcCCCCceecCChhhcchHHHHHHHHHHHHcC---CCEEEEEcCCceEE
Confidence 55654333 444455554444433 2222 1111 122333333332 36899999999887
Q ss_pred EEEeeCCeEE
Q 007976 157 FVIGKRGKVV 166 (582)
Q Consensus 157 l~~~~~~~~~ 166 (582)
=.+-.+|+..
T Consensus 138 d~v~~~g~~~ 147 (258)
T PRK13318 138 DVVSAKGEYL 147 (258)
T ss_pred EEEcCCCcEE
Confidence 6665555544
No 98
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=82.26 E-value=11 Score=43.89 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCc
Q 007976 68 SVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRL 144 (582)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~ 144 (582)
+...|+..++.++.+ |.+.. .+|-| -|.=.. .....+...-+..|+++ ++|+...=|-+.| |... . ....
T Consensus 155 ~a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~~-~qR~a~~~Aa~~AGl~v~~li~EptAAAlay-~~~~--~-~~~~ 227 (663)
T PTZ00400 155 GAFVLEKMKETAESYLGRKVK--QAVITVPAYFND-SQRQATKDAGKIAGLDVLRIINEPTAAALAF-GMDK--N-DGKT 227 (663)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--eEEEEECCCCCH-HHHHHHHHHHHHcCCceEEEeCchHHHHHHh-cccc--C-CCcE
Confidence 334566666666554 43322 33433 221111 12233344555679994 5888887777766 3321 1 2356
Q ss_pred eEEEEeCCCceEEEEee--CCeEE---EEEEEechHHHHHH
Q 007976 145 VLSVDIGGGSTEFVIGK--RGKVV---FCESVNLGHVSLSE 180 (582)
Q Consensus 145 ~lviDIGGGStEl~~~~--~~~~~---~~~SlplG~vrl~e 180 (582)
.+|+|+|||++.+++++ +|.+. .....++|...+.+
T Consensus 228 vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~ 268 (663)
T PTZ00400 228 IAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQ 268 (663)
T ss_pred EEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHH
Confidence 89999999999999875 55432 12223556554443
No 99
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=81.78 E-value=1.7 Score=46.80 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccc--------------cC---CCCchhh
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF--------------TS---KKGYHKQ 423 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~--------------I~---~~~h~kH 423 (582)
.|+--|+.+|..|...+..... ... ........++++||++||||.. -. ...|..+
T Consensus 41 tHslev~~i~r~~~~~l~~~~~--~~~-----~~~~~~~~l~~~a~L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q 113 (381)
T TIGR01353 41 THSLEVAQVGRSIANLIGLRYD--LEL-----EELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQ 113 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--ccc-----ccccccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHH
Confidence 7999999999999887754211 000 0112345799999999999953 21 3466677
Q ss_pred hHHHHHc
Q 007976 424 SCHIIMN 430 (582)
Q Consensus 424 S~yiI~n 430 (582)
|+-|+..
T Consensus 114 ~~ri~~~ 120 (381)
T TIGR01353 114 TFRILTT 120 (381)
T ss_pred HHHHHHH
Confidence 7777755
No 100
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=81.77 E-value=26 Score=35.53 Aligned_cols=126 Identities=20% Similarity=0.288 Sum_probs=74.1
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCCcc--EEEEE
Q 007976 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDH--TRAVA 93 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~--i~~vA 93 (582)
.||.|+.+++.++++. +|. ++.+.+ .....+....++.+.+.|+. +.+++++.+.+..+ ..+++
T Consensus 2 GIDgGgTkt~~vl~d~--~g~--il~~~~---------~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 2 GIDGGGTKTKAVLVDE--NGN--ILGRGK---------GGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG 68 (271)
T ss_dssp EEEECSSEEEEEEEET--TSE--EEEEEE---------ES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEeeChheeeeEEEeC--CCC--EEEEEE---------eCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence 5999999999999974 343 332221 11122233344454544433 34455555665433 44567
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEE
Q 007976 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (582)
Q Consensus 94 TsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~ 167 (582)
++.+=.+.+...|...+... ++.+.+-..- ...+. .. ++++++=-|.||.=+.+-++|++..
T Consensus 69 ~aG~~~~~~~~~~~~~~~~~---~v~~~~Da~~---al~~~---~~---~~giv~I~GTGS~~~~~~~~g~~~r 130 (271)
T PF01869_consen 69 AAGYGRAGDEQEFQEEIVRS---EVIVVNDAAI---ALYGA---TA---EDGIVVIAGTGSIAYGRDRDGRVIR 130 (271)
T ss_dssp EEEEEETTTTTHHHHHHHHH---EEEEEEHHHH---HHHHH---ST---SSEEEEEESSSEEEEEEETTSEEEE
T ss_pred EeeecCcccccchhhcceEE---EEEEEHHHHH---HhCCC---CC---CcEEEEEcCCCceEEEEEcCCcEEE
Confidence 77777777776777666555 7777776433 23232 22 2367777788888887776787654
No 101
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=81.43 E-value=5.3 Score=44.38 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=51.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSI-STQSQARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~L-s~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
.+.++.||+||.|.|..|++.. +|.. +.....+++-...-..-..- +.+-.+..++||+.-.+.+...+.....+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~-~~e~--l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~ 81 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK-NGEL--LSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGAT 81 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC-CCcc--ceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccE
Confidence 4679999999999999999854 3432 22222232221111111122 346667778888887777766665555566
Q ss_pred EEEehhhhh
Q 007976 91 AVATAAVRA 99 (582)
Q Consensus 91 ~vATsA~R~ 99 (582)
+++..--|+
T Consensus 82 ~igv~~qr~ 90 (516)
T KOG2517|consen 82 CIGVVNQRE 90 (516)
T ss_pred EEEEEecCC
Confidence 666554444
No 102
>PLN03184 chloroplast Hsp70; Provisional
Probab=81.20 E-value=14 Score=43.01 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.3
Q ss_pred HHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC--CeEE---EEEEEechHHHHHH
Q 007976 107 VECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR--GKVV---FCESVNLGHVSLSE 180 (582)
Q Consensus 107 l~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~--~~~~---~~~SlplG~vrl~e 180 (582)
+...-+..|+++ ++|+...=|.+.| |.-. . .+...+|+|+|||++.+++.+- +.+. .....++|.-.+.+
T Consensus 191 ~~~Aa~~AGl~v~~li~EPtAAAlay-g~~~--~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~ 266 (673)
T PLN03184 191 TKDAGRIAGLEVLRIINEPTAASLAY-GFEK--K-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 266 (673)
T ss_pred HHHHHHHCCCCeEEEeCcHHHHHHHh-hccc--C-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHH
Confidence 444556679995 5788887777766 3321 1 2356899999999999988653 3221 12234666655544
No 103
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.10 E-value=3.1 Score=36.94 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=25.5
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEechHH
Q 007976 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (582)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (582)
.+++|||++.|-+++++.+...+...+|+|..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~ 32 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEV 32 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecc
Confidence 36899999999999999999999999999954
No 104
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=80.91 E-value=6.7 Score=43.35 Aligned_cols=77 Identities=12% Similarity=0.280 Sum_probs=44.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
++.+||+||.|+|..+++. +|++ +...+.+..........| +.+++. .+.+++++++... + +++.+|+
T Consensus 2 ~ilgiD~GTss~K~~l~d~--~g~~--va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~---~--~~~~~I~ 72 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR--QGKI--VASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINS---E--LTEKHIR 72 (465)
T ss_pred eEEEEecCCCcEEEEEEcC--CCCE--EEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHh---h--cChhceE
Confidence 4678999999999999984 5654 333333322111111222 345555 3455555655542 2 3335689
Q ss_pred EEEehhhhh
Q 007976 91 AVATAAVRA 99 (582)
Q Consensus 91 ~vATsA~R~ 99 (582)
+|+.++.+.
T Consensus 73 aI~~s~~~~ 81 (465)
T TIGR02628 73 GIAVTTFGV 81 (465)
T ss_pred EEEEecccc
Confidence 998877644
No 105
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=80.47 E-value=6.5 Score=33.03 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=47.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+-+||+|...+++.+++- +|. ++...+.+.. . + . .+ .++.+.++++++.+ ...+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~--~g~--~~~~~~~~~~--~----~--~-~~-------~~~~l~~~i~~~~~---~~i~Ig~ 59 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE--TGK--LADPLEVIPR--T----N--K-EA-------DAARLKKLIKKYQP---DLIVIGL 59 (99)
T ss_pred EEEEccCCCeEEEEEECC--CCC--EecCEEEEEe--c----C--c-ch-------HHHHHHHHHHHhCC---CEEEEeC
Confidence 568999999999999853 443 3333333322 0 0 0 11 23333344445554 2466763
Q ss_pred hh-----hhhcCChHHHHHHHHHHcCCcEEEeC
Q 007976 95 AA-----VRAAENKDEFVECVREKVGFEVDVLT 122 (582)
Q Consensus 95 sA-----~R~A~N~~~fl~~I~~~tG~~i~VIs 122 (582)
.. +...-+ ..|.+.+++.+|+++.+.+
T Consensus 60 pg~v~g~~~~~~~-~~l~~~l~~~~~~pv~~~n 91 (99)
T smart00732 60 PLNMNGTASRETE-EAFAELLKERFNLPVVLVD 91 (99)
T ss_pred CcCCCCCcCHHHH-HHHHHHHHHhhCCcEEEEe
Confidence 21 111123 6777888888898888765
No 106
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=79.73 E-value=1.9 Score=45.48 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF 414 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~ 414 (582)
.|+--|+.+|.++...|. + + ..++++||++||||..
T Consensus 65 ~Hsl~V~~iar~~~~~l~----~-----------~---~~l~~aaaL~HDiGh~ 100 (336)
T PRK01286 65 THTLEVAQIARTIARALR----L-----------N---EDLTEAIALGHDLGHT 100 (336)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCCC
Confidence 799999999999877652 1 1 2689999999999963
No 107
>PRK00047 glpK glycerol kinase; Provisional
Probab=79.72 E-value=5.2 Score=44.58 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=44.4
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCCccE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHT 89 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i 89 (582)
+++..||+||.|+|..+++. +|+. +.....++.+ .....| ...++.+ +.+++++ ++++++.+++..+|
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~--~g~~--~~~~~~~~~~--~~~~~g~~e~d~~~~~~~~~~~~---~~~~~~~~~~~~~I 75 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH--DGNI--VSVAQKEFTQ--IFPQPGWVEHDPNEIWASQLSVI---AEALAKAGISPDQI 75 (498)
T ss_pred CEEEEEecCCCceEEEEECC--CCCE--EEEEeeeccc--cCCCCCeEeeCHHHHHHHHHHHH---HHHHHHcCCChhHe
Confidence 46889999999999999974 4543 3333333222 111223 3344443 3333444 44455567665678
Q ss_pred EEEEehhhh
Q 007976 90 RAVATAAVR 98 (582)
Q Consensus 90 ~~vATsA~R 98 (582)
.+|+-++.+
T Consensus 76 ~~Igis~~~ 84 (498)
T PRK00047 76 AAIGITNQR 84 (498)
T ss_pred eEEEEecCc
Confidence 888866663
No 108
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=79.40 E-value=10 Score=43.43 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCce
Q 007976 68 SVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 68 ~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~ 145 (582)
+...|+.+++.++.+ |-+. ..+|-|=-..--.+....+...-+..|+++ ++|+...=|-+.| |... . .+...
T Consensus 122 ~a~iL~~lk~~ae~~lg~~v--~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay-~~~~--~-~~~~v 195 (595)
T PRK01433 122 AAEIFIYLKNQAEEQLKTNI--TKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY-GLNK--N-QKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHhCCCc--ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH-hccc--C-CCCEE
Confidence 345677777777654 4322 234444221111234445555566789996 6888888888776 4322 1 23458
Q ss_pred EEEEeCCCceEEEEee
Q 007976 146 LSVDIGGGSTEFVIGK 161 (582)
Q Consensus 146 lviDIGGGStEl~~~~ 161 (582)
+|+|+|||++.+++++
T Consensus 196 lV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 196 LVYDLGGGTFDVSILN 211 (595)
T ss_pred EEEECCCCcEEEEEEE
Confidence 9999999999999876
No 109
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.71 E-value=50 Score=34.13 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=79.2
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE--EEEe
Q 007976 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR--AVAT 94 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~--~vAT 94 (582)
.||||.+.+++.+++.. |. ++.+.+.+.. . -.++.++...+.+++|.+. ++.+..++. .||+
T Consensus 2 gidig~t~~~~~l~d~~--g~--i~~~~~~~~~------~---~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~ 65 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDEE--GN--ILSKWKVPTD------T---TPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGA 65 (318)
T ss_pred EEEeCCCEEEEEEECCC--CC--EEEEEEeCCC------C---CHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEec
Confidence 68999999999999753 43 4444333221 1 1355677777777777653 333222333 3444
Q ss_pred hhhhhc--------C----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC
Q 007976 95 AAVRAA--------E----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (582)
Q Consensus 95 sA~R~A--------~----N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~ 162 (582)
...=+. . +.-.+.+.+++++|++|-+.+.-.=+-+.-.-.-..- ..++.+++.+|.|. -..++.+
T Consensus 66 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~--~~~~~~~v~igtGi-G~giv~~ 142 (318)
T TIGR00744 66 PGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGK--GARDVICITLGTGL-GGGIIIN 142 (318)
T ss_pred cccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccC--CCCcEEEEEeCCcc-EEEEEEC
Confidence 432221 1 2335778899999999998887666555332110111 23568999999886 5556667
Q ss_pred CeEEE
Q 007976 163 GKVVF 167 (582)
Q Consensus 163 ~~~~~ 167 (582)
|++..
T Consensus 143 G~~~~ 147 (318)
T TIGR00744 143 GEIRH 147 (318)
T ss_pred CEEee
Confidence 77764
No 110
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=78.43 E-value=13 Score=39.61 Aligned_cols=136 Identities=17% Similarity=0.098 Sum_probs=74.3
Q ss_pred CCceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 11 PQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 11 ~~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
+...+..||.||.+.++++.+- +. .+++.+.. ...+ .|. +.+++++-. +..+.+..+|-
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d---~~-~I~~~~~~---~t~g-------~p~----~~~~l~~~l---e~l~~~~~~I~ 191 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMED---GK-EILYGFYV---STKG-------RPI----AEKALKEAL---EELGEKLEEIL 191 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeC---CC-eEEEEEEE---cCCC-------Chh----HHHHHHHHH---HHcccChheee
Confidence 4457899999999999999963 33 34433311 1222 122 233333332 23333312333
Q ss_pred E-EEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEE
Q 007976 91 A-VATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCE 169 (582)
Q Consensus 91 ~-vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~ 169 (582)
. ..|-==|+.-+...+.|.+ ..|----++|+....|.. + .|+||||-=+-.+..++|.+....
T Consensus 192 ~~~~TGYGR~~v~~~~~aD~~-------------~~Ei~ah~kgA~~f~p~~--d-tIiDIGGQD~K~i~i~dG~v~df~ 255 (396)
T COG1924 192 GLGVTGYGRNLVGAALGADKV-------------VVEISAHAKGARYFAPDV--D-TVIDIGGQDSKVIKLEDGKVDDFT 255 (396)
T ss_pred eeeeecccHHHhhhhhcCCcc-------------eeeeehhHHHHHHhCCCC--c-EEEEecCcceeEEEEeCCeeeeeE
Confidence 3 3343334433322333322 234455677887766532 2 999999999999999999875321
Q ss_pred ---EEechHHHHHHhhc
Q 007976 170 ---SVNLGHVSLSEKFG 183 (582)
Q Consensus 170 ---SlplG~vrl~e~f~ 183 (582)
-=.-|+-|+-|.+-
T Consensus 256 mN~~CAAGtGrFLE~~A 272 (396)
T COG1924 256 MNDKCAAGTGRFLEVIA 272 (396)
T ss_pred eccccccccchHHHHHH
Confidence 11235556666553
No 111
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=78.38 E-value=7.5 Score=43.80 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=43.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeec---cCCC------cCC--CCCHHHH-HHHHHHHHHHHHHHHH
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILG---RDLS------SSC--SISTQSQ-ARSVESLLMFRDIIQS 81 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg---~g~~------~~g--~Ls~e~i-~r~~~~L~~f~~~~~~ 81 (582)
++.+||+||.|+|..|++.. +|+. +.....++.+- .... ..| +.+++.+ +.++++ +++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~--~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~---~~~~~~~ 75 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEE--IATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAA---IPTVLAE 75 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcE--eeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHH---HHHHHHH
Confidence 47899999999999999832 4543 33333333210 0000 112 2334443 222333 4455566
Q ss_pred cCCCCccEEEEEehhhh
Q 007976 82 HNISRDHTRAVATAAVR 98 (582)
Q Consensus 82 ~~v~~~~i~~vATsA~R 98 (582)
.+++..+|.+|+.++.+
T Consensus 76 ~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 76 LGVDPADVVGIGVDFTA 92 (536)
T ss_pred cCCCHHHEEEEEEecCc
Confidence 67765679999877653
No 112
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=78.36 E-value=2 Score=44.90 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKK 418 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~ 418 (582)
.|.-.|+++|..+.+. +. .-+|.||-++|+|||||+-..++
T Consensus 162 eHtl~v~~~~~~l~~~----y~-------------~~n~dll~agalLHDiGKi~E~~ 202 (314)
T PRK13480 162 YHVVSMLRLAKSICDL----YP-------------SLNKDLLYAGIILHDLGKVIELS 202 (314)
T ss_pred HHHHHHHHHHHHHHHh----cc-------------ccCHHHHHHHHHHHHhhhHHHhc
Confidence 5777888888876432 21 12367999999999999865554
No 113
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=78.25 E-value=25 Score=40.68 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhccCCCCCCceE
Q 007976 69 VESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQFLPVFDRLVL 146 (582)
Q Consensus 69 ~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~~l~~~~~~~l 146 (582)
...|+..++.++.+ |-+..+ .+++.-|.=. .+....+...-+..|+++ ++|+...=|-+.|. ...... .+...+
T Consensus 122 a~iL~~lk~~ae~~~g~~v~~-~VItVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~-~~~~~~-~~~~vl 197 (653)
T PTZ00009 122 SMVLQKMKEIAEAYLGKQVKD-AVVTVPAYFN-DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG-LDKKGD-GEKNVL 197 (653)
T ss_pred HHHHHHHHHHHHHHhCCCcce-eEEEeCCCCC-HHHHHHHHHHHHHcCCceeEEecchHHHHHHHh-hhccCC-CCCEEE
Confidence 34566666666554 432222 2232222111 122334555566789995 68888887777763 322211 235689
Q ss_pred EEEeCCCceEEEEee
Q 007976 147 SVDIGGGSTEFVIGK 161 (582)
Q Consensus 147 viDIGGGStEl~~~~ 161 (582)
|+|+|||++.+++++
T Consensus 198 v~D~GggT~dvsv~~ 212 (653)
T PTZ00009 198 IFDLGGGTFDVSLLT 212 (653)
T ss_pred EEECCCCeEEEEEEE
Confidence 999999999998865
No 114
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=77.54 E-value=6 Score=43.29 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=61.8
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (582)
.+++.+||-|+.|.|..|++- +|++ +...... +-.-..+.|-.-.++.+---.++.-..+.+.+.++++.+|.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~--~g~i--va~~q~e--~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaa 77 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE--DGNI--VAIAQRE--FTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAA 77 (499)
T ss_pred ccEEEEEecCCcceeEEEECC--CCCc--hhhhhhh--hhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 468999999999999999964 3443 2222222 111223345555555544444445555556666888878888
Q ss_pred EE-----------------------------ehhhhhcCChHHHHHHHHHHcCCcEE
Q 007976 92 VA-----------------------------TAAVRAAENKDEFVECVREKVGFEVD 119 (582)
Q Consensus 92 vA-----------------------------TsA~R~A~N~~~fl~~I~~~tG~~i~ 119 (582)
+| |+.+=+--+.+...+.|++.||+.++
T Consensus 78 IGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~d 134 (499)
T COG0554 78 IGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLD 134 (499)
T ss_pred EEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccC
Confidence 87 33333333334566777888888775
No 115
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=77.02 E-value=16 Score=41.77 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhhhhcc
Q 007976 59 SISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMGVLQF 137 (582)
Q Consensus 59 ~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~gv~~~ 137 (582)
.++++.+. ...|+.+++.++++--... -.+|-|=-.--..+...-...+-+..|++ +++|+...=|-|.| |.-..
T Consensus 94 ~~~~eeis--a~~L~~lk~~ae~~lg~~v-~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlay-g~~~~ 169 (579)
T COG0443 94 KYTPEEIS--AMILTKLKEDAEAYLGEKV-TDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY-GLDKG 169 (579)
T ss_pred eeCHHHHH--HHHHHHHHHHHHHhhCCCc-ceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-HhccC
Confidence 45555443 4556777777766632211 24455522222222244445555667877 67899888888887 33322
Q ss_pred CCCCCCceEEEEeCCCceEEEEee
Q 007976 138 LPVFDRLVLSVDIGGGSTEFVIGK 161 (582)
Q Consensus 138 l~~~~~~~lviDIGGGStEl~~~~ 161 (582)
.+...+|+|+|||.+.+++.+
T Consensus 170 ---~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 170 ---KEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ---CCcEEEEEEcCCCCEEEEEEE
Confidence 345689999999999999865
No 116
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=76.52 E-value=10 Score=42.42 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=43.6
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCH-HHHHHHHHHHHHHHHHHHHcCCCCcc
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SIST-QSQARSVESLLMFRDIIQSHNISRDH 88 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~-e~i~r~~~~L~~f~~~~~~~~v~~~~ 88 (582)
.+++.+||+|+.++|.++++.+ ++ +++...+..-..-. ...| .-++ +-.+.+++++++. +++..++..+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~-~~--~~~~~~~~~~~~~~--~~~g~~e~d~~~~w~~~~~ai~~l---~~~~~~~~~~ 74 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED-GG--EVVATARFENPVST--PQPGWAEQDPDELWQAILEALRQL---LEESKIDPDA 74 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC-CC--eEEEEeeccccccC--CCCCCcccCHHHHHHHHHHHHHHH---HHhcccChhh
Confidence 3579999999999999999865 23 33433322211111 1122 1233 3334444555544 4444466567
Q ss_pred EEEEEehhh
Q 007976 89 TRAVATAAV 97 (582)
Q Consensus 89 i~~vATsA~ 97 (582)
|.+|+-++.
T Consensus 75 I~aI~is~~ 83 (502)
T COG1070 75 IAAIGISGQ 83 (502)
T ss_pred ceEEEEecc
Confidence 888875544
No 117
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=76.35 E-value=5.3 Score=41.86 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=52.0
Q ss_pred HcCCCCccEEEEEehhhhh--cCChH---HHHHHHHHHcCC-------------cEEEeChHHHHHHHHhhhhccCCCCC
Q 007976 81 SHNISRDHTRAVATAAVRA--AENKD---EFVECVREKVGF-------------EVDVLTGEQEAKFVYMGVLQFLPVFD 142 (582)
Q Consensus 81 ~~~v~~~~i~~vATsA~R~--A~N~~---~fl~~I~~~tG~-------------~i~VIsgeEEA~l~~~gv~~~l~~~~ 142 (582)
.-|+++.+|.++.|==+.+ ..+.+ +.+++=++..-. +++|+...-=|.+.++.- +. ..
T Consensus 88 ~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~---~~-~~ 163 (318)
T PF06406_consen 88 KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD---LD-ED 163 (318)
T ss_dssp HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT---S--TT
T ss_pred HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh---hc-cc
Confidence 3477767787777743322 11222 223322222322 344555444455555443 22 23
Q ss_pred CceEEEEeCCCceEEEEeeCCeE--EEE-EEEechHHHHHHhhc
Q 007976 143 RLVLSVDIGGGSTEFVIGKRGKV--VFC-ESVNLGHVSLSEKFG 183 (582)
Q Consensus 143 ~~~lviDIGGGStEl~~~~~~~~--~~~-~SlplG~vrl~e~f~ 183 (582)
+..+|+||||+.|.+..+.++.. ... .+.++|...+++...
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~ 207 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIA 207 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHH
T ss_pred CcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHH
Confidence 45899999999999999887532 222 345789999888653
No 118
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=75.92 E-value=7.4 Score=43.33 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=44.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTR 90 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~ 90 (582)
++..||+||.++|..+++. +|+ ++...+.+.+. .....| ...++. .+.++++++ +++++.++++.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~--~g~--~l~~~~~~~~~--~~~~~g~~e~d~~~~~~~i~~~i~---~~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK--DGN--IVAIHQKEFTQ--IFPKPGWVEHDPMEIWESVLSCIA---EALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC--CCC--EEEEEeeeccc--cCCCCCcEeeCHHHHHHHHHHHHH---HHHHHcCCChhhee
Confidence 5788999999999999973 453 44444444332 112223 223443 333333344 34456677656788
Q ss_pred EEEehhhh
Q 007976 91 AVATAAVR 98 (582)
Q Consensus 91 ~vATsA~R 98 (582)
+|+-++.+
T Consensus 73 aIgis~~~ 80 (493)
T TIGR01311 73 AIGITNQR 80 (493)
T ss_pred EEEEecCc
Confidence 88766553
No 119
>PRK13411 molecular chaperone DnaK; Provisional
Probab=75.56 E-value=23 Score=41.08 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEe-hhhhhcCChHHHHHHHHHHcCCcE-EEeChHHHHHHHHhhhhc
Q 007976 60 ISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVAT-AAVRAAENKDEFVECVREKVGFEV-DVLTGEQEAKFVYMGVLQ 136 (582)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vAT-sA~R~A~N~~~fl~~I~~~tG~~i-~VIsgeEEA~l~~~gv~~ 136 (582)
++++.+- ...|+..++.++.+ |.+.. .+|-| -|.=. ......+...-+..|+++ ++|+...=|-+.| |...
T Consensus 108 ~~peei~--a~iL~~lk~~ae~~lg~~v~--~~VITVPa~f~-~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y-~~~~ 181 (653)
T PRK13411 108 YTPQEIS--AMILQKLKQDAEAYLGEPVT--QAVITVPAYFT-DAQRQATKDAGTIAGLEVLRIINEPTAAALAY-GLDK 181 (653)
T ss_pred ECHHHHH--HHHHHHHHHHHHHHhCCCcc--eEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEecchHHHHHHh-cccc
Confidence 4554443 23466677666554 43322 22332 22111 122333444556789995 6888887777766 3322
Q ss_pred cCCCCCCceEEEEeCCCceEEEEee
Q 007976 137 FLPVFDRLVLSVDIGGGSTEFVIGK 161 (582)
Q Consensus 137 ~l~~~~~~~lviDIGGGStEl~~~~ 161 (582)
. ..+...+|+|+|||++.+++.+
T Consensus 182 ~--~~~~~vlV~DlGgGT~dvsi~~ 204 (653)
T PRK13411 182 Q--DQEQLILVFDLGGGTFDVSILQ 204 (653)
T ss_pred c--CCCCEEEEEEcCCCeEEEEEEE
Confidence 1 1245689999999999998765
No 120
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=75.13 E-value=3.6 Score=45.03 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHH-hcccccchhhhhhccCCcchHHHHHHHHHHhhcccc----------------cCCCCchhh
Q 007976 361 KAGAQCASIAKDIFEGLR-KCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF----------------TSKKGYHKQ 423 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~-~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~----------------I~~~~h~kH 423 (582)
.|+.-|+.+|..+...+. .... +.. ... ....|+++||++||||.- ...-.|.-|
T Consensus 61 tHslev~~i~r~~~~~~~~~~~~-~~~------~~~-~~~~l~~a~~L~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQ 132 (432)
T PRK05318 61 THSLEVAQIGTGIVAQLKKEKQP-ELK------PLL-PSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQ 132 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccc------ccc-ccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhcCCCchHHH
Confidence 799999999999988873 2111 000 001 134689999999999963 123456667
Q ss_pred hHHHHHcCCC---CCCCCHHHHhhhhhHHHHHHHHHhh
Q 007976 424 SCHIIMNGDH---LYGYSTDEIKHLVCLQLIALLTRFH 458 (582)
Q Consensus 424 S~yiI~ns~~---l~G~s~~E~~~~~~~~~iA~iaryh 458 (582)
|+-|+..-+. -.|++-- |-.++.++.|-
T Consensus 133 slRIlt~Le~~~~~~GLNLT-------~~tL~gilKYp 163 (432)
T PRK05318 133 TFRILTKLEPYTEHFGMNLT-------RRTLLGILKYP 163 (432)
T ss_pred HHHHHHHHhccCCCCCcccc-------HHHHHHHHcCC
Confidence 7777754431 1344332 22566667773
No 121
>PRK04123 ribulokinase; Provisional
Probab=74.63 E-value=14 Score=41.77 Aligned_cols=80 Identities=9% Similarity=0.031 Sum_probs=46.9
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc----CCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCC
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR----DLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISR 86 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~----g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~ 86 (582)
++.+||+||.|+|..+++.. +|+. +........... .....| ...++. .+.+++++++- +++.+++.
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~-~g~~--~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~---~~~~~~~~ 77 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCA-TGEE--LATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAV---LKEAGVDP 77 (548)
T ss_pred EEEEEecCCCceEEEEEECC-CCcE--eEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHH---HHHcCCCh
Confidence 68899999999999999742 4543 333332222211 112223 233444 55566666553 44456655
Q ss_pred ccEEEEEehhhhh
Q 007976 87 DHTRAVATAAVRA 99 (582)
Q Consensus 87 ~~i~~vATsA~R~ 99 (582)
.+|.+++-++.+.
T Consensus 78 ~~I~aIgis~~~~ 90 (548)
T PRK04123 78 AAVVGIGVDFTGS 90 (548)
T ss_pred hhEEEEEEecccc
Confidence 6799999887654
No 122
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=74.53 E-value=3.4 Score=45.36 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhccc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~ 413 (582)
.|+.-|+.+|..|...+..... ....+. .........++++||++||||.
T Consensus 64 tHsleV~~i~r~i~~~l~~~l~--~~~~~~-~~~~~~~~~lv~aa~L~HDiGh 113 (440)
T PRK01096 64 THSLEVSCVGRSLGMRVGETLK--EEKLPD-WISPADIGAIVQSACLAHDIGN 113 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhcccc-ccccchHHHHHHHHHHHhcCCC
Confidence 7999999998888776653211 000000 0001123469999999999995
No 123
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=73.48 E-value=76 Score=33.36 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=75.5
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehh
Q 007976 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAA 96 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA 96 (582)
.+|||.=.++. +.++++|....+.. .+..|=++. +++-++|+.+.+ .++.. +.+-++=|.=
T Consensus 2 G~DiGGA~~K~--a~~~~~g~~~~v~~--~~~plW~~~-----------~~L~~~l~~~~~---~~~~~-~~~avtMTgE 62 (318)
T TIGR03123 2 GIDIGGANTKA--AELDEDGRIKEVHQ--LYCPLWKGN-----------DKLAETLKEISQ---DLSSA-DNVAVTMTGE 62 (318)
T ss_pred ccccccceeee--EEecCCCceeEEEE--ecCcccCCc-----------hHHHHHHHHHHH---hcCcc-ceEEEEeehh
Confidence 47999655554 45555665544432 444455552 222334444433 23332 3455566766
Q ss_pred hhhc-----CChHHHHHHHHHHcCCcEEEeCh------HHHHH-H----HHhhhh---ccCCCCCCceEEEEeCCCceEE
Q 007976 97 VRAA-----ENKDEFVECVREKVGFEVDVLTG------EQEAK-F----VYMGVL---QFLPVFDRLVLSVDIGGGSTEF 157 (582)
Q Consensus 97 ~R~A-----~N~~~fl~~I~~~tG~~i~VIsg------eEEA~-l----~~~gv~---~~l~~~~~~~lviDIGGGStEl 157 (582)
+-++ .=-..+++.+.+..+-++.+..+ -++|. . ...|.. ..+.-..++.+++||||=||.+
T Consensus 63 LaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi 142 (318)
T TIGR03123 63 LADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDI 142 (318)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceee
Confidence 6543 12244567777777667766322 23332 2 111221 1111113459999999999999
Q ss_pred EEeeCCeEEEEEEEech
Q 007976 158 VIGKRGKVVFCESVNLG 174 (582)
Q Consensus 158 ~~~~~~~~~~~~SlplG 174 (582)
+.+.+|++.......++
T Consensus 143 ~~i~~G~p~~~~~~d~~ 159 (318)
T TIGR03123 143 IPIIDGEVAAKGKTDLE 159 (318)
T ss_pred EEecCCEeeeeechhhh
Confidence 99999998766455554
No 124
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=73.37 E-value=1.2e+02 Score=31.35 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=74.7
Q ss_pred EEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEeh
Q 007976 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATA 95 (582)
Q Consensus 16 AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATs 95 (582)
-.|||||.++++++.+. ++++..... + + ..++..++-|+.... .++. ...+.+|-
T Consensus 3 iGiDiGgT~~Kiv~~~~--~~~~~f~~~---~---------~-----~~~~~~~~~l~~~~~---~~~~---~~~i~~TG 57 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEP--KGRRKFKTF---E---------T-----TNIDKFIEWLKNQIH---RHSR---ITTLCATG 57 (279)
T ss_pred EEEEeCcceEEEEEEcC--CCcEEEEEe---e---------c-----ccHHHHHHHHHHHHH---hhcC---ceEEEEEC
Confidence 57999999999999752 444322111 1 1 113344444443332 2222 23445553
Q ss_pred hhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCC----CCCceEEEEeCCCceEEEEeeCCeEEEEEEE
Q 007976 96 AVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPV----FDRLVLSVDIGGGSTEFVIGKRGKVVFCESV 171 (582)
Q Consensus 96 A~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~----~~~~~lviDIGGGStEl~~~~~~~~~~~~Sl 171 (582)
..+-.|-+.++...|++++ -.+|-.-...|+..-++. +-.+.+++.||.| |-++.+++.+..+.---
T Consensus 58 -----gGa~k~~~~~~~~~~v~~~---k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsG-vSi~~v~~~~~~Rv~Gt 128 (279)
T TIGR00555 58 -----GGAFKFAELIYESAGIQLH---KFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTG-TSILYVDGDNYERVGGT 128 (279)
T ss_pred -----CcHHHHHHHhccccCCccc---chhHHHHHHHHHHHHhhcccCCCCCceEEEEecCC-eEEEEEcCccEEEEcCc
Confidence 2334566777766665542 344555555565543321 2245799999888 88888886666665556
Q ss_pred echHHHHHHh
Q 007976 172 NLGHVSLSEK 181 (582)
Q Consensus 172 plG~vrl~e~ 181 (582)
.+|--++...
T Consensus 129 ~iGGGTf~GL 138 (279)
T TIGR00555 129 SLGGGTFLGL 138 (279)
T ss_pred cccHHHHHHH
Confidence 7777666643
No 125
>PRK10331 L-fuculokinase; Provisional
Probab=73.15 E-value=20 Score=39.66 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=43.3
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHT 89 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i 89 (582)
+++.+||+||.|+|..+++. +|++ +...+.+...-......| +..++. .+.+++++++.. ++. ...+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~--~G~~--~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~---~~~--~~~~I 72 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR--QGKI--VARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQIN---SEL--TECHI 72 (470)
T ss_pred ceEEEEecCCCceEEEEEcC--CCcE--EEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHH---HhC--Cccce
Confidence 46789999999999999974 5654 444444422211111122 334444 334444454443 332 22358
Q ss_pred EEEEehhhhh
Q 007976 90 RAVATAAVRA 99 (582)
Q Consensus 90 ~~vATsA~R~ 99 (582)
.+++-++.+.
T Consensus 73 ~~I~is~~~~ 82 (470)
T PRK10331 73 RGITVTTFGV 82 (470)
T ss_pred EEEEEecccc
Confidence 8888777654
No 126
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=72.85 E-value=14 Score=41.24 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=43.7
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCc--c
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRD--H 88 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~--~ 88 (582)
++..||+||.|+|..+++. +|+. +...+.+..+- ....| +..++. .+.+++++++.. ++.+..+. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~--~G~~--v~~~~~~~~~~--~~~~g~~eqd~~~~~~~~~~~l~~~~---~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE--KGNV--VSSHQIPHEQI--TPHPGWLEHDPEEILRNVYKCMNEAI---KKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC--CCCE--EEEEEEeeccc--CCCCCeEeeCHHHHHHHHHHHHHHHH---HHcCCCCccCc
Confidence 6889999999999999974 4643 44443333221 11122 233433 334445555443 33444333 6
Q ss_pred EEEEEehhhhh
Q 007976 89 TRAVATAAVRA 99 (582)
Q Consensus 89 i~~vATsA~R~ 99 (582)
|.+|+.++.+.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 88888777644
No 127
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=72.49 E-value=4.8 Score=43.25 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCCchhhhHHHH----HcCCCCCC
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHII----MNGDHLYG 436 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~h~kHS~yiI----~ns~~l~G 436 (582)
+|+.=|..+|..+-+.|...-+.- ..+++.+..-.++|++|||||.- +.+ |-|..- ..++ .-
T Consensus 76 eHsLG~~~lA~~~v~~L~~~q~~E-------l~It~~d~~~vqvA~LLHDIGHG--PfS---HmFe~~f~~~v~s~--~e 141 (498)
T KOG2681|consen 76 EHSLGTYTLAGILVNALNKNQCPE-------LCITEVDLQAVQVAALLHDIGHG--PFS---HLFEGEFTPMVRSG--PE 141 (498)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCC-------CCCCHHHHHHHHHHHHHhhcCCC--chh---hhhhheecccccCC--cc
Confidence 577777888888877777543211 14577788889999999999942 222 222211 1332 47
Q ss_pred CCHHHHh
Q 007976 437 YSTDEIK 443 (582)
Q Consensus 437 ~s~~E~~ 443 (582)
|+|++..
T Consensus 142 ~~HE~~s 148 (498)
T KOG2681|consen 142 FYHEDMS 148 (498)
T ss_pred cchhhhH
Confidence 8999866
No 128
>PRK09698 D-allose kinase; Provisional
Probab=72.48 E-value=1e+02 Score=31.52 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=78.6
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (582)
.++..||||.+.+++.+++.+ |. ++.+.+.++. ...+++.++...+.+++|..... ..+ .-..|
T Consensus 4 ~~~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~-~~i---~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAE--GE--ILHCEKKRTA--------EVIAPDLVSGLGEMIDEYLRRFN-ARC---HGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCC--CC--EEEEEEeCCc--------cccchHHHHHHHHHHHHHHHHcC-CCe---eEEEE
Confidence 467889999999999999763 43 4544433321 11234557777777777765321 111 12344
Q ss_pred Eehhh--------hhcCC-------hHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEE
Q 007976 93 ATAAV--------RAAEN-------KDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEF 157 (582)
Q Consensus 93 ATsA~--------R~A~N-------~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl 157 (582)
|+... ....| .-.+.+.+++++|++|.+.+.-.=+-+.-.- .......+.+.+.+|.| +--
T Consensus 68 a~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~---~~~~~~~~~~~v~lgtG-IG~ 143 (302)
T PRK09698 68 GFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVK---ENNLTQQLVLGAYLGTG-MGF 143 (302)
T ss_pred eCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHH---hcCCCCceEEEEEecCc-eEE
Confidence 44332 11222 2246777888999999998876544332211 11112246788888876 444
Q ss_pred EEeeCCeEEEE
Q 007976 158 VIGKRGKVVFC 168 (582)
Q Consensus 158 ~~~~~~~~~~~ 168 (582)
.+.-+|++...
T Consensus 144 giv~~G~~~~G 154 (302)
T PRK09698 144 AVWMNGAPWTG 154 (302)
T ss_pred EEEECCEEeeC
Confidence 56667776543
No 129
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.60 E-value=44 Score=35.98 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=60.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCccEEEEEehhhhhcCChHHHHHHHHHHc-------CCc-EEEeChHHH
Q 007976 56 SSCSISTQSQARSVESLLMFRDIIQSH-NISRDHTRAVATAAVRAAENKDEFVECVREKV-------GFE-VDVLTGEQE 126 (582)
Q Consensus 56 ~~g~Ls~e~i~r~~~~L~~f~~~~~~~-~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~t-------G~~-i~VIsgeEE 126 (582)
++..++||-|.. -+|..+++.+++| |-+. ..+|-|- ..+|-+.-++.| |++ ++||+...-
T Consensus 143 ~~K~FtPeEiSa--MiL~KMKe~AEayLGkkv--~~AVvTv-------PAYFNDAQrQATKDAGtIAgLnV~RIiNePTa 211 (663)
T KOG0100|consen 143 ETKVFTPEEISA--MILTKMKETAEAYLGKKV--THAVVTV-------PAYFNDAQRQATKDAGTIAGLNVVRIINEPTA 211 (663)
T ss_pred cccccCHHHHHH--HHHHHHHHHHHHHhCCcc--cceEEec-------chhcchHHHhhhcccceeccceEEEeecCccH
Confidence 446788988775 4688999999998 3221 2344442 124555445544 777 567777766
Q ss_pred HHHHHhhhhccCCCCCCceEEEEeCCCceEEEE--eeCCeE
Q 007976 127 AKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVI--GKRGKV 165 (582)
Q Consensus 127 A~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~--~~~~~~ 165 (582)
|.+.| |.-.. ..+.+.+|+|+|||...+++ .++|-+
T Consensus 212 AAIAY-GLDKk--~gEknilVfDLGGGTFDVSlLtIdnGVF 249 (663)
T KOG0100|consen 212 AAIAY-GLDKK--DGEKNILVFDLGGGTFDVSLLTIDNGVF 249 (663)
T ss_pred HHHHh-ccccc--CCcceEEEEEcCCceEEEEEEEEcCceE
Confidence 65544 43211 23467999999999999876 456644
No 130
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=70.12 E-value=5.9 Score=44.07 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccc-cchhhhhhccCC---cchHHHHHHHHHHhhccc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKL-YNNQVKLIASFE---DKDLEYLEAACLLHNIGH 413 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l-~~~~~~~~~~~~---~~~~~LL~~Aa~LHdIG~ 413 (582)
.|+--|+.+|..|...+.....- +.... ..++ .....++++||++||||.
T Consensus 68 tHSleV~~i~r~i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~lveaa~L~HDiGh 121 (503)
T PRK04926 68 THSLEVQQVGRYIAKEILSRLKEQKLLEA---YGLDELTGPFESIVEMACLMHDIGN 121 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc---ccccccccchHHHHHHHHHHhcCCC
Confidence 68777777777666555321100 00000 0111 122479999999999995
No 131
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=68.75 E-value=23 Score=39.99 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=41.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHH-HHHHHHHHHHHHHHHHcCCCCccEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQ-ARSVESLLMFRDIIQSHNISRDHTRA 91 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~i-~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (582)
+..||+||.|+|..+++. +|+ ++.....+..+-. ...| ...++.+ +..++++ +++++..+++..+|.+
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~--i~~~~~~~~~~~~--~~~g~~eqdp~~~~~~~~~~i---~~~~~~~~~~~~~I~~ 72 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS--TGD--ILALAAQNIKTWT--PSSGLEGQSSVYIWQAICNCV---KQVLAESKVDPNSVKG 72 (541)
T ss_pred EEEEEecCcCEEEEEEcC--CCC--EEEEEEeeeeecc--CCCCcccCCHHHHHHHHHHHH---HHHHHHcCCChhheEE
Confidence 568999999999999974 454 3444333333211 1112 2344443 3334444 4455566766567888
Q ss_pred EEehh
Q 007976 92 VATAA 96 (582)
Q Consensus 92 vATsA 96 (582)
++-++
T Consensus 73 Igis~ 77 (541)
T TIGR01315 73 IGFDA 77 (541)
T ss_pred EEecc
Confidence 88665
No 132
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=68.37 E-value=5.4 Score=43.58 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccc---------c-------CCCCchhhh
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHF---------T-------SKKGYHKQS 424 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~---------I-------~~~~h~kHS 424 (582)
.|+--|+.+|..+...+. + + ..|+++||++||||.- + ....|.-+|
T Consensus 73 tHslev~~~~r~~~~~~~----~-----------~---~~~~~~~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQs 134 (428)
T PRK03007 73 THSLEVAQIGRGIAAGLG----C-----------D---PDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQT 134 (428)
T ss_pred HHHHHHHHHHHHHHHHhC----C-----------C---HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHH
Confidence 799999999999876652 1 1 2689999999999962 1 234666777
Q ss_pred HHHHHcCC
Q 007976 425 CHIIMNGD 432 (582)
Q Consensus 425 ~yiI~ns~ 432 (582)
+-|+..-+
T Consensus 135 lRIlt~LE 142 (428)
T PRK03007 135 LRILTRLE 142 (428)
T ss_pred HHHHHHhc
Confidence 77776544
No 133
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=67.83 E-value=6.3 Score=39.07 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHhhccccc
Q 007976 397 KDLEYLEAACLLHNIGHFT 415 (582)
Q Consensus 397 ~~~~LL~~Aa~LHdIG~~I 415 (582)
.++.++-+||+|||||+-+
T Consensus 103 ~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 103 AWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4457899999999999973
No 134
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=66.93 E-value=7 Score=40.41 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=19.8
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEEEEEec
Q 007976 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (582)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (582)
.++.+++||||-||.+++..+|++..+..-.+
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~ 107 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEISSEGAI 107 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--------
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeeccccccc
Confidence 35699999999999999999999875544443
No 135
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=66.23 E-value=49 Score=34.30 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCc---CCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCc
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSS---SCSIS-TQSQARSVESLLMFRDIIQSHNISRD 87 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~---~g~Ls-~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (582)
++++-.||-|+.++|.+|++. +|+ ++ |++... ..... ++++..+.+++..+.. +-|.+++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~--~g~--vl---------g~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~---~aG~~~~ 67 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADE--DGN--VL---------GRGKSGPANIQLVGKEEAVRNIKDAIREALD---EAGLKPD 67 (301)
T ss_pred ccEEEEEccCCcceEEEEEcC--CCc--EE---------EEeccCCceecccchHHHHHHHHHHHHHHHH---hcCCCHH
Confidence 456889999999999999973 444 33 333221 12333 6777777777666553 2344432
Q ss_pred c--EEEEEehhhhhcCChHHHHHHHHHHc--CCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeCC
Q 007976 88 H--TRAVATAAVRAAENKDEFVECVREKV--GFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRG 163 (582)
Q Consensus 88 ~--i~~vATsA~R~A~N~~~fl~~I~~~t--G~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~~ 163 (582)
+ ..+++.+..- .|.++-......-. ..++.|-+. ++..++|.. .++.++++=.|.||.=+.. +++
T Consensus 68 ~i~~~~agla~ag--~~~~~~~~~~~~~l~~a~~v~v~~D---g~iAl~ga~-----~~~~Gii~i~GTGSi~~~~-~gg 136 (301)
T COG2971 68 EIAAIVAGLALAG--ANVEEAREELERLLPFAGKVDVEND---GLIALRGAL-----GDDDGIIVIAGTGSIGYGR-KGG 136 (301)
T ss_pred HhCceeeeeeccC--cchhHHHHHHHHhcCccceEEEecC---hHHHHhhcc-----CCCCCEEEEecCCeEEEEE-eCC
Confidence 2 2233333221 12233333332222 224555554 444444432 1345899999999999988 666
Q ss_pred eEE
Q 007976 164 KVV 166 (582)
Q Consensus 164 ~~~ 166 (582)
+..
T Consensus 137 ~~~ 139 (301)
T COG2971 137 RRE 139 (301)
T ss_pred eeE
Confidence 543
No 136
>PLN02295 glycerol kinase
Probab=65.68 E-value=19 Score=40.31 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHHHH-HHHHHHHHHHHHHHHcCCCCcc---
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQSQA-RSVESLLMFRDIIQSHNISRDH--- 88 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~i~-r~~~~L~~f~~~~~~~~v~~~~--- 88 (582)
+.+||+||.|+|..+++. +|+. +.....+..+ .....| +..++.+- .+++++ ++++++.++++.+
T Consensus 2 vlgID~GTts~Ka~l~d~--~G~~--~~~~~~~~~~--~~~~~G~~Eqdp~~~w~~~~~~i---~~~~~~~~~~~~~i~~ 72 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR--DARP--VASHQVEFTQ--IYPQAGWVEHDPMEILESVLTCI---AKALEKAAAKGHNVDS 72 (512)
T ss_pred EEEEecCCCceEEEEECC--CCCE--EEEEeecccc--cCCCCCcEeeCHHHHHHHHHHHH---HHHHHHcCCCcccccc
Confidence 568999999999999973 5654 4333333322 111122 23455443 334444 4445555665544
Q ss_pred -EEEEEehhhhh
Q 007976 89 -TRAVATAAVRA 99 (582)
Q Consensus 89 -i~~vATsA~R~ 99 (582)
|.+|+-++.+.
T Consensus 73 ~i~aIg~s~q~~ 84 (512)
T PLN02295 73 GLKAIGITNQRE 84 (512)
T ss_pred ceEEEEEecCcc
Confidence 68888666543
No 137
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=64.36 E-value=3.3 Score=38.65 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcccccCCCCch
Q 007976 401 YLEAACLLHNIGHFTSKKGYH 421 (582)
Q Consensus 401 LL~~Aa~LHdIG~~I~~~~h~ 421 (582)
-|=+||+|||||..++.++|.
T Consensus 50 ~lVaaALLHDiGhl~~~~g~~ 70 (186)
T COG4341 50 ALVAAALLHDIGHLYADYGHT 70 (186)
T ss_pred HHHHHHHHHhHHHHhhhcCCC
Confidence 477999999999999887743
No 138
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=61.62 E-value=19 Score=39.62 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=41.8
Q ss_pred EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHH-HHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 17 SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
.||||++++|..+++. +|+ ++.....+..... ...| ..+++ -++.+++++++ ++++++.++.+|.+|+
T Consensus 2 gIDiGtt~ik~~l~d~--~g~--i~~~~~~~~~~~~--~~~g~~e~d~~~~~~~l~~~i~~---~~~~~~~~~~~I~gIg 72 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE--QGE--VIASGSAPHTVIS--PHPGWSEQDPEDWWDATEEAIKE---LLEQASEMGQDIKGIG 72 (481)
T ss_pred ceeecCcceEEEEECC--CCC--EEEEEeecccccC--CCCCCeeeCHHHHHHHHHHHHHH---HHHhcCCCcccEEEEE
Confidence 5999999999999974 454 4444444433211 1122 22333 34444555544 4556676656788888
Q ss_pred ehhh
Q 007976 94 TAAV 97 (582)
Q Consensus 94 TsA~ 97 (582)
-++.
T Consensus 73 vs~~ 76 (481)
T TIGR01312 73 ISGQ 76 (481)
T ss_pred EecC
Confidence 7743
No 139
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=60.30 E-value=1.1e+02 Score=30.63 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=72.9
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+..||||.+.+|+.+++.. + +++.+.+.++. . .-.++-++.+.+.++.+.... +.. .-..||+
T Consensus 2 ~lgidiggt~i~~~l~d~~--g--~i~~~~~~~~~--~------~~~~~~~~~i~~~i~~~~~~~---~~~--~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN--L--QRIWHKRVPTP--R------EDYPQLLQILRDLTEEADTYC---GVQ--GSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC--C--CEEEEEEecCC--C------cCHHHHHHHHHHHHHHHHhhc---CCC--ceEEEEe
Confidence 5799999999999999763 4 34555544421 0 112455555555565554311 110 1123333
Q ss_pred hhh--------hhc----CChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEeeC
Q 007976 95 AAV--------RAA----ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (582)
Q Consensus 95 sA~--------R~A----~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~~~ 162 (582)
..+ +.+ -+.-.+.+.+++++|++|.+-+.-.=+-+.-.-.-..- ..++.+.+-+|.| +-..++-+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~--~~~~~v~i~lgtG-iG~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFR--TYPTVLGLILGTG-VGGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCC--CCCcEEEEEECcC-eEEEEEEC
Confidence 221 111 12346778888999999999887766655443111111 1245777777754 33445556
Q ss_pred CeEEE
Q 007976 163 GKVVF 167 (582)
Q Consensus 163 ~~~~~ 167 (582)
|++..
T Consensus 142 G~l~~ 146 (256)
T PRK13311 142 GSIVS 146 (256)
T ss_pred CEEec
Confidence 66543
No 140
>PRK13317 pantothenate kinase; Provisional
Probab=59.70 E-value=2.1e+02 Score=29.34 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=41.2
Q ss_pred cCCcEEEeChHHHHHHHHhhhhccC---CCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHHHHHH
Q 007976 114 VGFEVDVLTGEQEAKFVYMGVLQFL---PVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSE 180 (582)
Q Consensus 114 tG~~i~VIsgeEEA~l~~~gv~~~l---~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~vrl~e 180 (582)
.|+++.= .+|-.-...|+..-+ ..+..+.+++++|+|-. ++.+++++..+.-.-.+|--.+..
T Consensus 67 ~~~~~~~---v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 67 YGYPIAE---FVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGGTGIGGGTIQG 132 (277)
T ss_pred cCCCeee---eHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEccccccHHHHHH
Confidence 5655422 466666666666544 11234578889888855 888888888777777777755544
No 141
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=58.25 E-value=34 Score=38.16 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=39.8
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCC--CCCHHH-HHHHHHHHHHHHHHHHHcCCCCccEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSC--SISTQS-QARSVESLLMFRDIIQSHNISRDHTRA 91 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (582)
+.+|||||.++|..+++. +|++ +...+.+...- ....| ..+++. .+.++++++ ++++..+.+ .+|.+
T Consensus 2 ~lgiDiGtt~~K~~l~d~--~g~i--~~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~---~~~~~~~~~-~~I~~ 71 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE--NGKI--VAKSSIGYPLY--TPASGMAEENPEEIFEAVLVTIR---EVSINLEDE-DEILF 71 (505)
T ss_pred EEEEeccccceEEEEEcC--CCCE--EEEEEeecccc--cCCCCCeeeCHHHHHHHHHHHHH---HHHHhCCCc-CceEE
Confidence 578999999999999973 5543 44333322211 11112 233433 333334444 444444443 45888
Q ss_pred EEehhhh
Q 007976 92 VATAAVR 98 (582)
Q Consensus 92 vATsA~R 98 (582)
++-++.+
T Consensus 72 Igis~~~ 78 (505)
T TIGR01314 72 VSFSTQM 78 (505)
T ss_pred EEEeccc
Confidence 8765543
No 142
>PRK15027 xylulokinase; Provisional
Probab=57.67 E-value=37 Score=37.66 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=40.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHcCCCCccEEEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~~v~~~~i~~vA 93 (582)
+-.||+||.|+|.++++. +|++ +...+.+..+...-...-..+++.+ .+++.. +++++++... ++|.+++
T Consensus 2 ~lgID~GTts~Ka~l~d~--~G~v--va~~~~~~~~~~~~~g~~eqd~~~~---w~~~~~~~~~l~~~~~~--~~I~aI~ 72 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE--QGEV--VASQTEKLTVSRPHPLWSEQDPEQW---WQATDRAMKALGDQHSL--QDVKALG 72 (484)
T ss_pred EEEEEecccceEEEEEcC--CCCE--EEEEeecccccCCCCCccccCHHHH---HHHHHHHHHHHHHhCCc--cceeEEE
Confidence 568999999999999973 5654 4333333322111000112334333 333332 3344444433 4688888
Q ss_pred ehhhhh
Q 007976 94 TAAVRA 99 (582)
Q Consensus 94 TsA~R~ 99 (582)
-++.+.
T Consensus 73 is~q~~ 78 (484)
T PRK15027 73 IAGQMH 78 (484)
T ss_pred EecCCC
Confidence 776653
No 143
>PRK09557 fructokinase; Reviewed
Probab=55.11 E-value=1.1e+02 Score=31.44 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+-.||||.+.+++.+++.+ |. ++.+.+.++. . .-.++.++.+.+.++++.. .++. ..-.+||+
T Consensus 2 ~lgidig~t~~~~~l~d~~--g~--i~~~~~~~~~------~--~~~~~~~~~i~~~i~~~~~---~~~~--~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDA--GE--ELFRKRLPTP------R--DDYQQTIEAIATLVDMAEQ---ATGQ--RGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECCC--CC--EEEEEEecCC------C--CCHHHHHHHHHHHHHHHHh---hcCC--ceEEEecC
Confidence 5689999999999999753 43 4444333221 0 1123344444444444432 2221 11234444
Q ss_pred hhhhh--------cC----ChHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 007976 95 AAVRA--------AE----NKDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (582)
Q Consensus 95 sA~R~--------A~----N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~--~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (582)
...=+ +. |.-.+.+.+++++|++|.+.+.-.=+-+.- .|... ..++.+.+.+|.| +-..++
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~----~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAA----GKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccC----CCCcEEEEEEccc-eEEEEE
Confidence 33211 11 334566778889999999887655433332 12211 2245778888744 344455
Q ss_pred eCCeEEEE
Q 007976 161 KRGKVVFC 168 (582)
Q Consensus 161 ~~~~~~~~ 168 (582)
-+|++...
T Consensus 140 ~~G~l~~G 147 (301)
T PRK09557 140 INGRVHIG 147 (301)
T ss_pred ECCEEEec
Confidence 67776543
No 144
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=54.50 E-value=43 Score=37.36 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=50.9
Q ss_pred ceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 007976 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS-CSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~-g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (582)
+++-.||+||.|.|-.|++.. +|. .|....++++-...-... -.=|.+-++..+.+++.-.+ +.||++.+|..
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~-~G~--~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~---~agv~~~~V~g 76 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQ-TGT--LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVA---KAGVDPADVVG 76 (544)
T ss_pred cEEEEEeecCCceeEEEEEcC-CCc--chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHH---HcCCChhHeeE
Confidence 357789999999999999986 453 455556665543321111 12256777777777776554 56898878887
Q ss_pred EEe
Q 007976 92 VAT 94 (582)
Q Consensus 92 vAT 94 (582)
++=
T Consensus 77 IGv 79 (544)
T COG1069 77 IGV 79 (544)
T ss_pred EEE
Confidence 763
No 145
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.12 E-value=1.7e+02 Score=30.07 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=72.2
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVAT 94 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vAT 94 (582)
+..||||.+.+++.+++.+ |. ++.+.+.++ .. .-.++.++...+.++++.. +++.. .-..||.
T Consensus 2 ~lgidig~t~i~~~l~d~~--g~--i~~~~~~~~--~~------~~~~~~~~~i~~~i~~~~~---~~~~~--~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK--LE--LQWEERVPT--PR------DSYDAFLDAVCELVAEADQ---RFGCK--GSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC--Cc--EEEEEEecC--CC------cCHHHHHHHHHHHHHHHHh---hcCCc--ceEEEeC
Confidence 5789999999999999763 43 444443332 10 1124445555555655542 22221 1133333
Q ss_pred hhhh-------hcCC-----hHHHHHHHHHHcCCcEEEeChHHHHHHHH--hhhhccCCCCCCceEEEEeCCCceEEEEe
Q 007976 95 AAVR-------AAEN-----KDEFVECVREKVGFEVDVLTGEQEAKFVY--MGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (582)
Q Consensus 95 sA~R-------~A~N-----~~~fl~~I~~~tG~~i~VIsgeEEA~l~~--~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (582)
...= .+.| .-.+.+.+++++|++|.+-+.-.=+-+.- .|... ..++.+.+.+|.| +--.++
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~----~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFT----QYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhcccc----CCCcEEEEEecCc-eEEEEE
Confidence 2211 1122 23577888999999999887765443332 12211 1245788888865 344555
Q ss_pred eCCeEEEE
Q 007976 161 KRGKVVFC 168 (582)
Q Consensus 161 ~~~~~~~~ 168 (582)
-+|++...
T Consensus 140 ~~G~l~~G 147 (303)
T PRK13310 140 FNGKPISG 147 (303)
T ss_pred ECCEEeeC
Confidence 67776543
No 146
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=48.89 E-value=27 Score=38.09 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH----HHhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF----VYMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l----~~~gv~~~l~~~~~~~ 145 (582)
++++..+.++.+|.+ ++.+|....+.+..-.+.+.+.++ .-|+++.+.++-+ |..+ .......... .-
T Consensus 10 ~~~~l~~~l~~~g~~--~vlivt~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D 82 (414)
T cd08190 10 VTAEVGMDLKNLGAR--RVCLVTDPNLAQLPPVKVVLDSLE-AAGINFEVYDDVRVEPTDESFKDAIAFAKKGQ----FD 82 (414)
T ss_pred HHHHHHHHHHHcCCC--eEEEEECcchhhcchHHHHHHHHH-HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 455555666777774 677777666766444566666654 4589999887522 2222 1111112221 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
+||-|||||+
T Consensus 83 ~IIaiGGGSv 92 (414)
T cd08190 83 AFVAVGGGSV 92 (414)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 147
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=48.82 E-value=1.4e+02 Score=31.14 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.2
Q ss_pred ccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH
Q 007976 87 DHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ 125 (582)
Q Consensus 87 ~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE 125 (582)
..|...|..| +-..|.+.+.+.+|+++++++..+
T Consensus 284 ~~I~LtGgga-----~~~gl~~~l~~~l~~~v~~~~P~~ 317 (348)
T TIGR01175 284 DGLVLAGGGA-----TLSGLDAAIYQRLGLPTEVANPFA 317 (348)
T ss_pred ceEEEECccc-----cchhHHHHHHHHHCCCeEecChHH
Confidence 3465555443 344688889999999999998644
No 148
>PRK13324 pantothenate kinase; Reviewed
Probab=48.74 E-value=3.1e+02 Score=27.89 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=66.1
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~-g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
+-+||||=.++++.+++ +++ .+... |+.. ... ..++| ....++.++..+++...++..+.
T Consensus 2 iL~iDiGNT~ik~gl~~---~~~--~~~~~----r~~t~~~~---~t~de-------~~~~l~~~~~~~~~~~~~i~~vi 62 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD---GDR--IVSQI----RYATSSVD---STSDQ-------MGVFLRQALRENSVDLGKIDGCG 62 (258)
T ss_pred EEEEEeCCCceEEEEEE---CCE--EEEEE----EEecCccc---cchHH-------HHHHHHHHHHhcCCCccCCCeEE
Confidence 45789999999999997 222 33322 2221 111 11111 12223444444454332344344
Q ss_pred ehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHH---------------HHHHhhhhccCCCCCCceEEEEeCCCceEEE
Q 007976 94 TAAVRAAENKDEFVECVREKVGFEVDVLTGEQEA---------------KFVYMGVLQFLPVFDRLVLSVDIGGGSTEFV 158 (582)
Q Consensus 94 TsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA---------------~l~~~gv~~~l~~~~~~~lviDIGGGStEl~ 158 (582)
-|.+.- +=...+.+.+.+.+|.++.+++.+... .+...|+.+.. +..+.+|+|.|..-|==.
T Consensus 63 isSVvP-~l~~~l~~~~~~~~~~~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~--~~~~~iViD~GTA~T~d~ 139 (258)
T PRK13324 63 ISSVVP-HLNYSLGSAVIKYFNIKPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADH--PNKDLLIIDLGTATTFDL 139 (258)
T ss_pred EEeCcc-hhHHHHHHHHHHHhCCCeEEEecCCccceeecCChhhccHHHHHHHHHHHHhc--CCCCEEEEEcCCceEEEE
Confidence 444442 223345466677788888777543311 01122222222 234689999999988655
Q ss_pred EeeCCeEE
Q 007976 159 IGKRGKVV 166 (582)
Q Consensus 159 ~~~~~~~~ 166 (582)
+-.+|...
T Consensus 140 v~~~g~~~ 147 (258)
T PRK13324 140 VTKDKKYL 147 (258)
T ss_pred EcCCCeEE
Confidence 55555544
No 149
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.55 E-value=76 Score=34.15 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-----EA~l~~~gv~~~l~~~~~~~ 145 (582)
++.+..+.++.+|.. ++.+|....++...-.+.+.+.++ +.|+.+.+.+|.+ |.-........... .-
T Consensus 18 ~~~~l~~~~~~~g~~--~~livt~~~~~~~g~~~~v~~~L~-~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~----~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFT--RTLIVTDNMLTKLGMAGDVQKALE-ERNIFSVIYDGTQPNPTTENVAAGLKLLKENN----CD 90 (383)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC----CC
Confidence 566666677778874 667777666666544556666554 4689888888732 21111112222221 12
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.|+=|||||+
T Consensus 91 ~IiaiGGGS~ 100 (383)
T PRK09860 91 SVISLGGGSP 100 (383)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 150
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.39 E-value=1.4e+02 Score=27.45 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=61.0
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
+++.|+|=+|..++.+...+ +|.+.+.+-....+.|..+-. .+.+. +--..|++++++|+|+ +|.+-
T Consensus 2 ~vCGVELkgneaii~ll~~~-~~~~~~pdcr~~k~~l~~~~~------~~~vr---~Fq~~f~kl~~dy~Vd--~VvIk- 68 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLD-DGLFQLPDCRVRKFSLSDDNS------TEEVR---KFQFTFAKLMEDYKVD--KVVIK- 68 (138)
T ss_pred eEEEEEEecCeEEEEEEecC-CCceECCccceeEEEcCCCcc------HHHHH---HHHHHHHHHHHHcCCC--EEEEE-
Confidence 47899999999999999976 677877776666666766532 33333 3344688889999995 44221
Q ss_pred ehhhh--hcCChH-HHHHHHHHHc-CCcEEEeChHH
Q 007976 94 TAAVR--AAENKD-EFVECVREKV-GFEVDVLTGEQ 125 (582)
Q Consensus 94 TsA~R--~A~N~~-~fl~~I~~~t-G~~i~VIsgeE 125 (582)
--+.. -|-.+- .-++.+-+.. +++|+++|+..
T Consensus 69 ~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~~~ 104 (138)
T PF11215_consen 69 ERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSPAT 104 (138)
T ss_pred ecccCCCccCCchhHHHHHHHHhcCCCcEEEECHHH
Confidence 00000 011111 2234333333 88999998864
No 151
>PLN02669 xylulokinase
Probab=44.70 E-value=79 Score=35.89 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=42.6
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCC-CCHH----------HH-HHHHHHHHHHHHHH
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCS-ISTQ----------SQ-ARSVESLLMFRDII 79 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~-Ls~e----------~i-~r~~~~L~~f~~~~ 79 (582)
.+++-.||+||.|+|-+|++. +|+..-.......+.+-+.-...|. ..++ -. +.+..++++..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~--~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~--- 81 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS--NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA--- 81 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC--CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH---
Confidence 457889999999999999973 4544333222222211111111111 1111 22 44444455543
Q ss_pred HHcCCCCccEEEEEehhh
Q 007976 80 QSHNISRDHTRAVATAAV 97 (582)
Q Consensus 80 ~~~~v~~~~i~~vATsA~ 97 (582)
+.+++..+|++++.++-
T Consensus 82 -~~~~~~~~I~aIs~s~Q 98 (556)
T PLN02669 82 -KEKFPFHKVVAISGSGQ 98 (556)
T ss_pred -HcCCChhhEEEEEecCC
Confidence 23666567999988754
No 152
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=42.98 E-value=48 Score=35.71 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-H-HHH-HHhhhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-E-AKF-VYMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-E-A~l-~~~gv~~~l~~~~~~~lv 147 (582)
++++..+.++.+| + ++.+|....+.+..-.+.+.+.++ +.|+++.+.+|.+ + -.. ...++..... . +.-.|
T Consensus 10 ~l~~l~~~~~~~g-~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~-~~D~I 83 (386)
T cd08191 10 QRRQLPRLAARLG-S--RALIVTDERMAGTPVFAELVQALA-AAGVEVEVFDGVLPDLPRSELCDAASAAAR-A-GPDVI 83 (386)
T ss_pred HHHHHHHHHHHcC-C--eEEEEECcchhhcchHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 4555555666777 3 567777666665444455555543 4589999988765 1 111 1122211111 1 12389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 84 IaiGGGS~ 91 (386)
T cd08191 84 IGLGGGSC 91 (386)
T ss_pred EEeCCchH
Confidence 99999995
No 153
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=42.93 E-value=28 Score=37.79 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCCchh-hhHHHHHcCCCCCCCCH
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHK-QSCHIIMNGDHLYGYST 439 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~h~k-HS~yiI~ns~~l~G~s~ 439 (582)
.|+--|+.+|..|=.+|.--.. .-...|++.||+.||||.- |.+|.= -+-.-.+.. .-||.+
T Consensus 71 THSLEVAQIgRsia~~l~~~~~-------------~~~~dL~E~a~LaHDiGhP--PFGH~GE~ALn~~m~~--~gGFEG 133 (412)
T COG0232 71 THSLEVAQIGRSIARELGLDLD-------------LPFEDLVETACLAHDIGHP--PFGHAGEDALNEVMRE--YGGFEG 133 (412)
T ss_pred hhhHHHHHHHHHHHHHhccccC-------------CChHHHHHHHHHHhcCCCC--CCCccHHHHHHHHHHH--cCCCcc
Confidence 7888888888776544432200 0123799999999999964 333322 222222222 247776
Q ss_pred HHHhhhhhHHHHHHHHHhhc
Q 007976 440 DEIKHLVCLQLIALLTRFHR 459 (582)
Q Consensus 440 ~E~~~~~~~~~iA~iaryhr 459 (582)
--|.+| ++..+=+++.
T Consensus 134 NAQ~fR----IlT~LE~~~~ 149 (412)
T COG0232 134 NAQTFR----ILTKLEKRYA 149 (412)
T ss_pred cchhhH----HHHHhhhhcc
Confidence 666643 4444444443
No 154
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=42.79 E-value=25 Score=38.84 Aligned_cols=164 Identities=18% Similarity=0.231 Sum_probs=86.0
Q ss_pred CCceEE-EEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcC------CCCCHHHHHH-HHH-HHHHHHHHHHH
Q 007976 11 PQTLFA-SIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSS------CSISTQSQAR-SVE-SLLMFRDIIQS 81 (582)
Q Consensus 11 ~~~~~A-vIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~------g~Ls~e~i~r-~~~-~L~~f~~~~~~ 81 (582)
.+..|+ ++|+||.+||+..+++..+.-.+.....+.+++.|+.+..- |.=-.++++. +++ .++.|-..|.+
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~~~id~~~~e 240 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAINQLIDKLCEE 240 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHHHHHhhhchh
Confidence 445565 79999999999999997433356777788888888876531 1111122222 222 24456677887
Q ss_pred cCCCCccE---EEEEehhhhhc---CChH-----HHHHHHHHH-------cCCcE----EEeChHHHH---HHHHhhhh-
Q 007976 82 HNISRDHT---RAVATAAVRAA---ENKD-----EFVECVREK-------VGFEV----DVLTGEQEA---KFVYMGVL- 135 (582)
Q Consensus 82 ~~v~~~~i---~~vATsA~R~A---~N~~-----~fl~~I~~~-------tG~~i----~VIsgeEEA---~l~~~gv~- 135 (582)
++|....| .+++.+-+--| .|.. +|..+..+- .|+++ ++..-.-=| =-..+|..
T Consensus 241 ~~V~~n~I~~svfqgn~Im~h~faG~~~~~l~~~p~~~~~~r~v~~~a~~iGl~~n~n~el~vlP~Ia~~VGADAla~il 320 (614)
T COG3894 241 GEVCGNPIQLSVFQGNPIMDHAFAGIDPTELGGSPFVKRVSRVVPASASEIGLEVNRNCELFVLPAIAHEVGADALAMIL 320 (614)
T ss_pred ccccccchhheeccCchHHHHHhcCCCHHHhcCCccccccccceecchhhcchhhcCCCEEEecchhccccchHHHHHHH
Confidence 77654332 23333222111 1111 112221110 12111 111100000 01112221
Q ss_pred -ccCCCCCCceEEEEeCCCceEEEEeeCCeEEEEEEEechHH
Q 007976 136 -QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHV 176 (582)
Q Consensus 136 -~~l~~~~~~~lviDIGGGStEl~~~~~~~~~~~~SlplG~v 176 (582)
..+-..++-.+++|+|. +.|++++.++++. .-|-|-|+.
T Consensus 321 ~tg~~~sdevslvtD~GT-NaEivlg~~~ri~-t~SaaaGPA 360 (614)
T COG3894 321 STGIHDSDEVSLVTDYGT-NAEIVLGNRDRIV-TASAAAGPA 360 (614)
T ss_pred hccCccccceEEEEeecc-cceEEeccCCEEE-EecCCCCcc
Confidence 22222345689999986 7899999888765 568888875
No 155
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=42.74 E-value=70 Score=34.28 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHH--HHhhhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKF--VYMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEE-A~l--~~~gv~~~l~~~~~~~lv 147 (582)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++-++ ..+ ...++..... .+.-.|
T Consensus 15 ~l~~l~~~l~~~g~~--~~livt~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~I 89 (377)
T cd08188 15 ALKLAGRYARRLGAK--KVLLVSDPGVIKAGWVDRVIESLE-EAGLEYVVFSDVSPNPRDEEVMAGAELYLE--NGCDVI 89 (377)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEE
Confidence 455666666777764 666776666766544566666654 56888888886432 211 1112111111 112389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 90 IaiGGGsv 97 (377)
T cd08188 90 IAVGGGSP 97 (377)
T ss_pred EEeCCchH
Confidence 99999995
No 156
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=42.37 E-value=1e+02 Score=27.37 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHHH
Q 007976 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFV 130 (582)
Q Consensus 75 f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~ 130 (582)
+.+.++.++++...|..+||-.++. .+.-+.++-++.|+++...+.+|=....
T Consensus 21 i~~~l~~~~~~~~~i~~iasi~~K~---~E~~l~~~A~~l~~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 21 IEQALAEAGLSPRSIAAIASIDIKA---DEPGLLELAEELGIPLRFFSAEELNAVE 73 (121)
T ss_dssp HHHHHHHCT--GGGEEEEEESSSSS-----HHHHHHHHHCTSEEEEE-HHHHHCHH
T ss_pred HHHHHHHcCCChhhccEEEeccccC---CCHHHHHHHHHhCCCeEEECHHHHhcCC
Confidence 3445566888888999999986644 4456666778899999999999877554
No 157
>PRK10854 exopolyphosphatase; Provisional
Probab=41.46 E-value=1.2e+02 Score=34.04 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=40.1
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k-~~vrLg~g~~~~g~Ls~e~i~r~~~~L~ 73 (582)
..-+||||+.|+-+.+++ ++.+....+.. -.|||-+..+.++..+++.+.++...+.
T Consensus 138 ~~lvvDIGGGStEl~~~~---~~~~~~~~S~~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 195 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGE---NFEPILVESRRMGCVSFAQLYFPGGVISKENFQRARLAAA 195 (513)
T ss_pred CeEEEEeCCCeEEEEEec---CCCeeEeEEEecceeeHHhhhCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999995 34444444443 3478888777777888777766555544
No 158
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=41.21 E-value=91 Score=33.72 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH--HHhhhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF--VYMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l--~~~gv~~~l~~~~~~~lv 147 (582)
++++..+.++.+|.. ++.+|+...++++.=-+.+.+.++ +.|+++.+.++-+ |-.+ ...++...-. .+.-+|
T Consensus 36 ~~~~l~~~~~~~g~~--~~lvv~~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~--~~~D~I 110 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--HLFVMADSFLHQAGMTAGLTRSLA-VKGIAMTLWPCPVGEPCITDVCAAVAQLRE--SGCDGV 110 (395)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCcCEE
Confidence 555566666677763 567776666766433466666654 4689888876443 2211 1112211111 112389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 111 iavGGGS~ 118 (395)
T PRK15454 111 IAFGGGSV 118 (395)
T ss_pred EEeCChHH
Confidence 99999995
No 159
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=40.96 E-value=1e+02 Score=33.12 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l~----~~gv~~~l~~~~~~~ 145 (582)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++.+ +..+. ......... .-
T Consensus 16 ~l~~l~~~l~~~g~~--r~lvvt~~~~~~~g~~~~v~~~L~-~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 88 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--KALVVTDKDLIKFGVADKVTDLLD-EAGIAYELFDEVKPNPTITVVKAGVAAFKASG----AD 88 (379)
T ss_pred HHHHHHHHHHhcCCC--EEEEEcCcchhhccchHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 455555566677774 667777666766545566666664 5689999987643 22111 111122221 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.|+=|||||+
T Consensus 89 ~IiaiGGGSv 98 (379)
T TIGR02638 89 YLIAIGGGSP 98 (379)
T ss_pred EEEEeCChHH
Confidence 8999999996
No 160
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=40.94 E-value=1.7e+02 Score=30.23 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=38.5
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM 74 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k-~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~ 74 (582)
..++|||+.|+.+..++ ++.+..-.+.. -.+||-+....++..+++.++.+.+.+++
T Consensus 127 ~~v~DiGGGSte~~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~ 184 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK---DFEPGEGVSLPLGCVRLTEQFFPDGPISKKSLKQARKAARE 184 (300)
T ss_pred cEEEEecCCeEEEEEec---CCCEeEEEEEccceEEhHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999874 34332222222 24678888777777887777766666544
No 161
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=40.77 E-value=17 Score=34.82 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhcccccCCCCchhh-------------hHHH
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ-------------SCHI 427 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~~I~~~~h~kH-------------S~yi 427 (582)
.|+..++.+|..|-..+ +. .+.....+|++|||||..+-.....++ +..-
T Consensus 97 ~~s~~~a~~a~~la~~~----~~-------------~~~~~a~~~gLL~~iG~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PF08668_consen 97 RHSLAAAAIARRLAREL----GF-------------DDPDEAYLAGLLHDIGKLLLLSLFPEYYEEILQEVKQEPESREE 159 (196)
T ss_dssp HHHHHHHHHHHHHHHHC----TC-------------CHHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHc----CC-------------CCHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHcCCCCHHH
Confidence 46777777777654332 21 123568899999999998866555444 2223
Q ss_pred HHcCCCCCCCCHHHHh
Q 007976 428 IMNGDHLYGYSTDEIK 443 (582)
Q Consensus 428 I~ns~~l~G~s~~E~~ 443 (582)
+... ++|++|.|.-
T Consensus 160 ~e~~--~~g~~h~~lg 173 (196)
T PF08668_consen 160 AERE--LFGVTHAELG 173 (196)
T ss_dssp HHHH--HHSSHHHHHH
T ss_pred HHHH--HHcCCHHHHH
Confidence 3333 4788888844
No 162
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=40.52 E-value=98 Score=33.22 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHH----HHhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKF----VYMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l----~~~gv~~~l~~~~~~~ 145 (582)
++.+..+.++.+|.. ++.+|....+.+..=.+.+.+.++ +.|+++.+.++-+ |..+ .......... .-
T Consensus 17 ~l~~l~~~~~~~g~~--~~lvvtd~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 89 (382)
T PRK10624 17 AIGALTDEVKRRGFK--KALIVTDKTLVKCGVVAKVTDVLD-AAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG----AD 89 (382)
T ss_pred HHHHHHHHHHhcCCC--EEEEEeCcchhhCcchHHHHHHHH-HCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 455555566677763 677777776766544555565554 4689999987543 2111 1111111221 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
+|+=|||||+
T Consensus 90 ~IIaiGGGS~ 99 (382)
T PRK10624 90 YLIAIGGGSP 99 (382)
T ss_pred EEEEeCChHH
Confidence 8999999995
No 163
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=40.22 E-value=4.8e+02 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.6
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEEE
Q 007976 142 DRLVLSVDIGGGSTEFVIGKRGKVVFC 168 (582)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~~ 168 (582)
+.+.+++=+|+|.. .....+|+++..
T Consensus 173 ~~~~I~~hLGtGig-~~ai~~Gk~vdg 198 (351)
T TIGR02707 173 EMNLIVAHMGGGIS-VAAHRKGRVIDV 198 (351)
T ss_pred cCCEEEEEeCCCce-eeeEECCEEEEc
Confidence 34799999999998 888888988754
No 164
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=40.19 E-value=40 Score=35.99 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHHh--hhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsge-EEA~l~~~--gv~~~l~~~~~~~lv 147 (582)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ +-|+++.+.++- .+..+.-. ++.. .... +.-+|
T Consensus 11 ~~~~l~~~l~~~g~~--~~liv~~~~~~~~~~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~-~~~~-~~d~I 85 (370)
T cd08192 11 AIKELPAECAELGIK--RPLIVTDPGLAALGLVARVLALLE-DAGLAAALFDEVPPNPTEAAVEAGLAA-YRAG-GCDGV 85 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHH-HHhc-CCCEE
Confidence 455555566667763 566676666655444566666554 458898888653 22222211 1111 1111 12389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
|-|||||+
T Consensus 86 IaiGGGSv 93 (370)
T cd08192 86 IAFGGGSA 93 (370)
T ss_pred EEeCCchH
Confidence 99999995
No 165
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=40.05 E-value=48 Score=36.46 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.9
Q ss_pred EEEecccceEEEEEEEe
Q 007976 17 SIDMGTSSFKLLIIRAY 33 (582)
Q Consensus 17 vIDIGSNSiRL~I~e~~ 33 (582)
+||+||.++|..+++.+
T Consensus 2 aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 2 AVDLGASSGRVMLASYE 18 (454)
T ss_pred cEeccCCchheEEEEEc
Confidence 79999999999999976
No 166
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=39.22 E-value=1e+02 Score=33.13 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhc-CChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCC
Q 007976 63 QSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAA-ENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVF 141 (582)
Q Consensus 63 e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A-~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~ 141 (582)
+.|++...-+- |.+ ..+.++.=-++.|++-=.. .|++...+-+.+..+.+-=.+ +..+++. ...
T Consensus 79 d~me~iw~~if-~~~----L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--------a~qavly--a~g 143 (372)
T KOG0676|consen 79 DDMEKIWHHLF-YSE----LLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--------AIQAVLY--ASG 143 (372)
T ss_pred HHHHHHHHHHH-HHh----hccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--------HHHHHHH--HcC
Confidence 45555443332 222 3443333455777665554 677777776677666553222 2223321 112
Q ss_pred CCceEEEEeCCCceEEEEeeCCeEEE--EEEEechHHHHHH
Q 007976 142 DRLVLSVDIGGGSTEFVIGKRGKVVF--CESVNLGHVSLSE 180 (582)
Q Consensus 142 ~~~~lviDIGGGStEl~~~~~~~~~~--~~SlplG~vrl~e 180 (582)
...++|+|+|.|-|-.+-+-+|-... ...+++|.--|++
T Consensus 144 ~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~ 184 (372)
T KOG0676|consen 144 RTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTD 184 (372)
T ss_pred CeeEEEEEcCCCceeeeecccccccchhhheecccchhhHH
Confidence 34589999999999887666665443 3578999888887
No 167
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=38.84 E-value=18 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHcCCCcHHHHHhhcCCCccchhhHH
Q 007976 268 ERLCCGGDGEVERVRRERFFKRRSEFIV 295 (582)
Q Consensus 268 ~~l~~~~~~~~er~~~~gl~~~Radii~ 295 (582)
+.+...+.+ |++++||+.+..|+.|+
T Consensus 3 ~g~~pas~e--eL~~lpGIG~~tA~~I~ 28 (30)
T PF00633_consen 3 DGLIPASIE--ELMKLPGIGPKTANAIL 28 (30)
T ss_dssp HHHHTSSHH--HHHTSTT-SHHHHHHHH
T ss_pred CCcCCCCHH--HHHhCCCcCHHHHHHHH
Confidence 345566777 89999999999988775
No 168
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=38.40 E-value=1.2e+02 Score=27.14 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHHH
Q 007976 60 ISTQSQARSVESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129 (582)
Q Consensus 60 Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l 129 (582)
.+.+.|..++ .+.++++++.+..|.++||-.++. |-..+++ +-++.|++++..|.+|=...
T Consensus 14 ~~~e~i~~ai------~~~L~~~~l~~~si~~lasi~~K~--~E~~L~~-~A~~lg~pl~~~~~~eL~~~ 74 (126)
T PRK07027 14 VPAEQIEAAI------RAALAQRPLASADVRVVATLDLKA--DEAGLLA-LCARHGWPLRAFSAAQLAAS 74 (126)
T ss_pred CCHHHHHHHH------HHHHHHcCCCHHHhheeEehhhhc--CCHHHHH-HHHHhCCCeEEeCHHHHHhc
Confidence 4666654443 356677888888899999988775 3344555 55678999999998886543
No 169
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=38.19 E-value=1.4e+02 Score=31.76 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l~----~~gv~~~l~~~~~~~ 145 (582)
++++..+.+++++.. ++.+|....+.+..-.+.+.+.++ +.|+++.+.++-+ +..+. ......... .-
T Consensus 10 ~l~~l~~~l~~~~~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~----~d 82 (370)
T cd08551 10 AIEKLGEEIKNLGGR--KALIVTDPGLVKTGVLDKVIDSLK-EAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG----CD 82 (370)
T ss_pred HHHHHHHHHHHcCCC--eEEEEeCcchhhCccHHHHHHHHH-HcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 455555666667763 566676666655333456666664 4588888887532 22222 211122111 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.|+-|||||+
T Consensus 83 ~IiaiGGGs~ 92 (370)
T cd08551 83 GVIAVGGGSV 92 (370)
T ss_pred EEEEeCCchH
Confidence 8999999995
No 170
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=38.05 E-value=1.3e+02 Score=31.79 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH----HhhhhccCCCCCCceE
Q 007976 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV----YMGVLQFLPVFDRLVL 146 (582)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEE-A~l~----~~gv~~~l~~~~~~~l 146 (582)
++++.+.++.++.. ++.+|..+.+.+ .=.+.+.+.++...++++.++++-|+ ..+. .......... +..-+
T Consensus 11 l~~l~~~~~~~~~~--k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-~r~d~ 86 (344)
T cd08169 11 LESVESYTTRDLFD--QYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGA-NRRTA 86 (344)
T ss_pred HHHHHHHHHhcCCC--eEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCCcE
Confidence 34444455556653 567777766655 12233333333224777778875333 2221 1111222221 22358
Q ss_pred EEEeCCCceE
Q 007976 147 SVDIGGGSTE 156 (582)
Q Consensus 147 viDIGGGStE 156 (582)
++=|||||+-
T Consensus 87 IIaiGGGsv~ 96 (344)
T cd08169 87 IVAVGGGATG 96 (344)
T ss_pred EEEECCcHHH
Confidence 9999999864
No 171
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=36.97 E-value=4.8e+02 Score=26.75 Aligned_cols=128 Identities=23% Similarity=0.282 Sum_probs=80.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
.+..||||.-...+... +|....++..--| +-. .-+|+-++|+++.. .+.+ +.+-+|-
T Consensus 4 kilGiDIGGAntk~a~~----DG~~~~~d~~YlP------MWk-------~k~rL~~~Lkei~~---k~~~--~~vgvvM 61 (330)
T COG1548 4 KILGIDIGGANTKIASS----DGDNYKIDHIYLP------MWK-------KKDRLEETLKEIVH---KDNV--DYVGVVM 61 (330)
T ss_pred eEEEeeccCccchhhhc----cCCeeeeeEEEec------ccc-------chhHHHHHHHHHhc---cCCc--ceeEEEe
Confidence 36899999888777662 4544334332211 111 12445566766654 3555 4578888
Q ss_pred ehhhhhcCC-----hHHHHHHHHHHcCCcEEEeChH-----HHHHHHHhhhh--cc------C-CCCCCceEEEEeCCCc
Q 007976 94 TAAVRAAEN-----KDEFVECVREKVGFEVDVLTGE-----QEAKFVYMGVL--QF------L-PVFDRLVLSVDIGGGS 154 (582)
Q Consensus 94 TsA~R~A~N-----~~~fl~~I~~~tG~~i~VIsge-----EEA~l~~~gv~--~~------l-~~~~~~~lviDIGGGS 154 (582)
|+-+-+|=| -+++++.++...+-++.+++-+ -||.=.+.-+. +. + ....++.+++|+|+-.
T Consensus 62 TaELaD~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 62 TAELADAFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred eHHHHHHhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcc
Confidence 999988754 3678999999999998887532 15543333332 21 1 1123458999999999
Q ss_pred eEEEEeeCC
Q 007976 155 TEFVIGKRG 163 (582)
Q Consensus 155 tEl~~~~~~ 163 (582)
|.|+-..+|
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999987655
No 172
>PRK13331 pantothenate kinase; Reviewed
Probab=35.25 E-value=3.2e+02 Score=27.69 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=16.0
Q ss_pred eEEEEEecccceEEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIR 31 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e 31 (582)
.+-+||||=.++.+-+++
T Consensus 8 ~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFS 25 (251)
T ss_pred cEEEEEeCCCcEEEEEEE
Confidence 357999999999999997
No 173
>PRK12408 glucokinase; Provisional
Probab=34.46 E-value=1.4e+02 Score=31.39 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=54.6
Q ss_pred ccCCC-ceEEEEEecccceEEEEEEEeCCCC----EEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 007976 8 MQIPQ-TLFASIDMGTSSFKLLIIRAYPNGK----FLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (582)
Q Consensus 8 ~~~~~-~~~AvIDIGSNSiRL~I~e~~~~~~----~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~ 82 (582)
++|++ ..+-+||||...+|+-+++.+ +. ..++...+.++. ..+.+. +++++|.+- ..
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~--g~~~~~~~~~~~~~~~t~-----------~~~~~~---~~i~~~~~~--~~ 71 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCAS--PDAAKPVELLDYRTYRCA-----------DYPSLA---AILADFLAE--CA 71 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEecc--CCccccccccceeEecCC-----------CccCHH---HHHHHHHhc--CC
Confidence 45544 348899999999999999643 32 123333333222 112233 334444321 11
Q ss_pred CCCCccEEEEEehhh-h-h----cCCh--HHHHHHHHHHcCCc-EEEeChHHHHHHH
Q 007976 83 NISRDHTRAVATAAV-R-A----AENK--DEFVECVREKVGFE-VDVLTGEQEAKFV 130 (582)
Q Consensus 83 ~v~~~~i~~vATsA~-R-~----A~N~--~~fl~~I~~~tG~~-i~VIsgeEEA~l~ 130 (582)
.+ .-.++|.... . + +.|- ..+-+.+++++|++ |.+++.-+=+-|.
T Consensus 72 ~~---~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~~~~V~l~ND~naaa~g 125 (336)
T PRK12408 72 PV---RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYA 125 (336)
T ss_pred Cc---CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcCCCeEEEeecHHHHHcc
Confidence 12 2234444442 1 0 2232 22457788899995 9999987766555
No 174
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=34.33 E-value=1.7e+02 Score=31.22 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHH----HhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFV----YMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l~----~~gv~~~l~~~~~~~ 145 (582)
++++..+.++.+|.. ++.+|....+++..-.+.+.+.++ ..|+++.+.++-+ +..+. ......... .-
T Consensus 13 ~l~~l~~~l~~~g~~--~~lvvt~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~d 85 (374)
T cd08189 13 SLAQLPAAISQLGVK--KVLIVTDKGLVKLGLLDKVLEALE-GAGIEYAVYDGVPPDPTIENVEAGLALYRENG----CD 85 (374)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCcchhhcccHHHHHHHHH-hcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC----CC
Confidence 455666666777763 677777666665322355555443 4588888887642 22121 111111111 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.|+=|||||+
T Consensus 86 ~IIaiGGGS~ 95 (374)
T cd08189 86 AILAVGGGSV 95 (374)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 175
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=34.21 E-value=3e+02 Score=25.01 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=56.4
Q ss_pred eEEEEEecccceEEEEEEEeCCCCE-EEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKF-LTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAV 92 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~-~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~v 92 (582)
++.+||.|+-.|=+.|.+. .+.+ .++... .-- + . . ..++.+.+++++++++ ..+|
T Consensus 5 ~iLalD~G~kriGvAv~d~--~~~~a~pl~~i----~~~-~----~--~--------~~~~~l~~~i~~~~i~---~iVv 60 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP--LGGTAQPLETI----KRN-N----G--T--------PDWDRLEKLIKEWQPD---GLVV 60 (138)
T ss_pred cEEEEEeCCCEEEEEEecC--CCCEEcCEEEE----EcC-C----C--c--------hHHHHHHHHHHHhCCC---EEEE
Confidence 4889999998888887753 2321 111111 000 0 0 0 1356677788888884 5678
Q ss_pred Ee------hhhhhcCChHHHHHHHHHHcCCcEEEeCh---HHHHHHHH
Q 007976 93 AT------AAVRAAENKDEFVECVREKVGFEVDVLTG---EQEAKFVY 131 (582)
Q Consensus 93 AT------sA~R~A~N~~~fl~~I~~~tG~~i~VIsg---eEEA~l~~ 131 (582)
|- +.-..|.-...|.+++++.++++|...+. ..||.-.+
T Consensus 61 GlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~TT~~A~~~l 108 (138)
T PRK00109 61 GLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERLSTVEAERAL 108 (138)
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcCHHHHHHHH
Confidence 81 11122333458999999999999998875 34554444
No 176
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=33.35 E-value=72 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.3
Q ss_pred ceEEEEEecccceEEEEEE
Q 007976 13 TLFASIDMGTSSFKLLIIR 31 (582)
Q Consensus 13 ~~~AvIDIGSNSiRL~I~e 31 (582)
++++.||+||.+.+.+|++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd 20 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMD 20 (432)
T ss_pred ceEEEEEcCchhEEEEEEc
Confidence 4689999999999999996
No 177
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.55 E-value=1.6e+02 Score=31.74 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-----EA~l~~~gv~~~l~~~~~~~ 145 (582)
+++...+.+..+|+. ++-+|.+..+.++.=-+.+++.++.+ |+++.|-++-+ |---.-..+..... . =
T Consensus 16 ~l~~l~~~~~~~g~~--r~liVTd~~~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~~~v~~~~~~~~~~~-~---D 88 (377)
T COG1454 16 SLKELGEEVKRLGAK--RALIVTDRGLAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTIETVEAGAEVAREFG-P---D 88 (377)
T ss_pred hHHHHHHHHHhcCCC--ceEEEECCccccchhHHHHHHHHHhc-CCeEEEecCCCCCCCHHHHHHHHHHHHhcC-C---C
Confidence 677777788888884 78889999988887778888877654 78888776421 11111112222222 1 2
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.||=+||||+
T Consensus 89 ~iIalGGGS~ 98 (377)
T COG1454 89 TIIALGGGSV 98 (377)
T ss_pred EEEEeCCccH
Confidence 8999999996
No 178
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=31.92 E-value=21 Score=41.29 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.9
Q ss_pred HHHHHHhhcccccCC
Q 007976 403 EAACLLHNIGHFTSK 417 (582)
Q Consensus 403 ~~Aa~LHdIG~~I~~ 417 (582)
-.||+|||||+++--
T Consensus 2 ~~~aLLHDIGK~~~R 16 (648)
T TIGR02578 2 AVAALLHDIGKVIRR 16 (648)
T ss_pred chhhhhhccchhhhh
Confidence 478999999999973
No 179
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=31.50 E-value=4.6e+02 Score=26.59 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=69.3
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHH-HHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQ-SQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e-~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
+..||||.+.+++.+++.+ |. ++.+.+.++.- . -+++ -++.+.+.++++..- + .-..||
T Consensus 3 ~lgvdig~~~i~~~l~dl~--g~--i~~~~~~~~~~------~--~~~~~~~~~i~~~i~~~~~~-----~---~~igi~ 62 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGED--GQ--IRQRRQIPTPA------S--QTPEALRQALSALVSPLQAQ-----A---DRVAVA 62 (291)
T ss_pred EEEEEECCCEEEEEEEcCC--Cc--EEEEEEecCCC------C--CCHHHHHHHHHHHHHHhhhc-----C---cEEEEe
Confidence 6789999999999999864 43 34433332210 0 1233 445555556555421 1 113344
Q ss_pred ehhhh--------hcC-----ChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 007976 94 TAAVR--------AAE-----NKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (582)
Q Consensus 94 TsA~R--------~A~-----N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (582)
+...= ... +.-.+.+.+++++|++|.+-+.-.=+-+.-.- .. ....++.+++-+|.| +--.++
T Consensus 63 ~pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~--~g-~~~~~~~~~l~ig~G-iG~giv 138 (291)
T PRK05082 63 STGIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQ--AL-PDDIRNMVFITVSTG-VGGGIV 138 (291)
T ss_pred CcccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHH--hc-CCCCCCEEEEEECCC-cceEEE
Confidence 33211 111 23356777888899999988865544433211 11 112245888888844 223344
Q ss_pred eCCeEEE
Q 007976 161 KRGKVVF 167 (582)
Q Consensus 161 ~~~~~~~ 167 (582)
-+|++..
T Consensus 139 ~~G~~~~ 145 (291)
T PRK05082 139 LNGKLLT 145 (291)
T ss_pred ECCEEee
Confidence 5666654
No 180
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.48 E-value=69 Score=34.30 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHH-HHHHHH----hhhhccCCCCCCce
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQ-EAKFVY----MGVLQFLPVFDRLV 145 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeE-EA~l~~----~gv~~~l~~~~~~~ 145 (582)
++++....++.+|.. ++.+|....+.+..=.+.+.+.++ ..|+++.+.++-+ |..+.- .......+ .-
T Consensus 15 ~l~~l~~~l~~~g~~--~~lvv~~~~~~~~~~~~~v~~~L~-~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~----~D 87 (377)
T cd08176 15 AIKEIGDELKNLGFK--KALIVTDKGLVKIGVVEKVTDVLD-EAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG----CD 87 (377)
T ss_pred HHHHHHHHHHHhCCC--eEEEECCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC----CC
Confidence 455555566667763 566676665554333445555554 4589999998732 222211 11112221 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
+|+=|||||+
T Consensus 88 ~IIavGGGS~ 97 (377)
T cd08176 88 FIISIGGGSP 97 (377)
T ss_pred EEEEeCCcHH
Confidence 8999999996
No 181
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=31.40 E-value=2.4e+02 Score=30.31 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHc---CCCCccEEEEEehhhhh-cCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCC
Q 007976 71 SLLMFRDIIQSH---NISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVF 141 (582)
Q Consensus 71 ~L~~f~~~~~~~---~v~~~~i~~vATsA~R~-A~N~~~fl~~I~~~tG~~i~VIsgeE-----EA~l~~~gv~~~l~~~ 141 (582)
++++..+.++.+ |.+ ++.+|....+.+ ..-.+.+.+.++ +.|+++.+.++-+ |.--..........
T Consensus 10 ~~~~l~~~l~~~~~~g~k--r~livtd~~~~~~~g~~~~v~~~L~-~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~-- 84 (383)
T cd08186 10 AIEKIGEILKDLKSKGIS--KVLLVTGKSAYKKSGAWDKVEPALD-EHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG-- 84 (383)
T ss_pred HHHHHHHHHHHhcccCCC--EEEEEcCccHHhhcChHHHHHHHHH-HcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--
Confidence 344444445554 553 566666544433 322356666654 4699999887543 11111112222222
Q ss_pred CCceEEEEeCCCce
Q 007976 142 DRLVLSVDIGGGST 155 (582)
Q Consensus 142 ~~~~lviDIGGGSt 155 (582)
.-+|+=|||||+
T Consensus 85 --~D~IIaiGGGS~ 96 (383)
T cd08186 85 --AQAVIAIGGGSP 96 (383)
T ss_pred --CCEEEEeCCccH
Confidence 128999999995
No 182
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=31.39 E-value=2.3e+02 Score=26.14 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=54.8
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEEEE
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRAVA 93 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~vA 93 (582)
.+.++|.|+-+|=..+.+... .--.++...+.. .-.+ ..++...+++++|++. ..+||
T Consensus 3 ~ilalD~G~KrIGvA~sd~~~-~~A~pl~~i~~~-----------~~~~-------~~~~~l~~li~~~~~~---~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDILG-SLASPLETIKRK-----------NGKP-------QDFNALLKLVKEYQVD---TVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecCCC-ccccchhhheec-----------cccH-------hhHHHHHHHHHHhCCC---EEEEe
Confidence 578999999999888886531 111222221111 0001 2445555667777773 46675
Q ss_pred -------ehhhhhcCChHHHHHHHHHHcCCcEEEeCh
Q 007976 94 -------TAAVRAAENKDEFVECVREKVGFEVDVLTG 123 (582)
Q Consensus 94 -------TsA~R~A~N~~~fl~~I~~~tG~~i~VIsg 123 (582)
|... .++-...|.++++++++++|...+.
T Consensus 61 lP~~m~g~~~~-~~~~~~~f~~~L~~r~~lpv~l~DE 96 (141)
T COG0816 61 LPLNMDGTEGP-RAELARKFAERLKKRFNLPVVLWDE 96 (141)
T ss_pred cCcCCCCCcch-hHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5555 4555689999999999999988764
No 183
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=30.73 E-value=58 Score=34.02 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHHHh-hhhccCCCCCCceEEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFVYM-GVLQFLPVFDRLVLSV 148 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEE-A~l~~~-gv~~~l~~~~~~~lvi 148 (582)
++++..+.++.++.+ ++.+|....+++ .=.+.+.+.+++. +++.+.++.+. .-+.-. .+...+.. .+.-.|+
T Consensus 10 ~l~~l~~~~~~~g~~--~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~II 83 (332)
T cd07766 10 AIEKIGEEIKRGGFD--RALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARA-AEVDAVI 83 (332)
T ss_pred HHHHHHHHHHhcCCC--eEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHh-cCcCEEE
Confidence 344444555666763 677787777766 3344455555443 67777764332 222111 11111110 1224899
Q ss_pred EeCCCce
Q 007976 149 DIGGGST 155 (582)
Q Consensus 149 DIGGGSt 155 (582)
=|||||+
T Consensus 84 aiGGGs~ 90 (332)
T cd07766 84 AVGGGST 90 (332)
T ss_pred EeCCchH
Confidence 9999996
No 184
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.37 E-value=1.9e+02 Score=32.37 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=54.3
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHc---CCCC
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLLM-FRDIIQSH---NISR 86 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k-~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~-f~~~~~~~---~v~~ 86 (582)
....-+||||.-|.-|++.+.. .+....+.. -.|||-+-.+.++.++++.++.+.+.++. +..+...+ +..
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~---~~~~~~Sl~~G~v~lt~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 203 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNF---EIGLLISLPLGCVRLTERFFPDDPISEENFAKARDAVREELEEIAKEYRIAGWA- 203 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCC---ccceeEEeecceEEeehhhcCCCCCCHHHHHHHHHHHHHHHHhhhHHHHhhhhc-
Confidence 3457899999999999999632 222222222 35788888888899999999999988765 44444443 221
Q ss_pred ccEEEEEehhh
Q 007976 87 DHTRAVATAAV 97 (582)
Q Consensus 87 ~~i~~vATsA~ 97 (582)
.+|||+..
T Consensus 204 ---~~vg~sGT 211 (492)
T COG0248 204 ---GLVGTSGT 211 (492)
T ss_pred ---cEEEccHH
Confidence 26887754
No 185
>PRK13321 pantothenate kinase; Reviewed
Probab=29.65 E-value=87 Score=31.60 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=23.9
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEec
Q 007976 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (582)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (582)
.+.+||||-++.+.+++++++...+.+|-
T Consensus 2 iL~IDIGnT~ik~gl~~~~~i~~~~~~~T 30 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDRLLRSFRLPT 30 (256)
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEEec
Confidence 47899999999999999877776666654
No 186
>PRK00292 glk glucokinase; Provisional
Probab=29.60 E-value=3.5e+02 Score=27.91 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred CceEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccEEE
Q 007976 12 QTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRDHTRA 91 (582)
Q Consensus 12 ~~~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~~~~~~~v~~~~i~~ 91 (582)
.+++.+||||..++|+.+++.. ++.+ +.+.+.++.- .+...+++..|.+......+ .-.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~-~~~~--~~~~~~~~~~--------------~~~~~~~l~~~l~~~~~~~~---~gig 60 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWA-NGEI--EQIKTYATAD--------------YPSLEDAIRAYLADEHGVQV---RSAC 60 (316)
T ss_pred CceEEEEEcCccceEEEEEecC-CCce--eeeEEEecCC--------------CCCHHHHHHHHHHhccCCCC---ceEE
Q ss_pred EEehhhhh-------cCChHHHHHHHHHHcCCc-EEEeChHHHHHHHHhh--------hhccCCCCCCceEEEEeCCC
Q 007976 92 VATAAVRA-------AENKDEFVECVREKVGFE-VDVLTGEQEAKFVYMG--------VLQFLPVFDRLVLSVDIGGG 153 (582)
Q Consensus 92 vATsA~R~-------A~N~~~fl~~I~~~tG~~-i~VIsgeEEA~l~~~g--------v~~~l~~~~~~~lviDIGGG 153 (582)
+|....-+ ..+-....+.+++++|++ |.+.+.-+=+-|.-.- .-..-+...++.+++-+|.|
T Consensus 61 Ig~pG~vd~~~i~~~n~~w~~~~~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 61 FAIAGPVDGDEVRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred EEEeCcccCCEEEecCCCcccCHHHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
No 187
>PF13941 MutL: MutL protein
Probab=29.33 E-value=98 Score=34.24 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeecc-CCCcCCCCCHHHHHHHHHHHHHHH
Q 007976 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGR-DLSSSCSISTQSQARSVESLLMFR 76 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~-g~~~~g~Ls~e~i~r~~~~L~~f~ 76 (582)
+=++||||-..++..++.. .+..+++.+-+.++.... ++ ..++.++++.|++..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~-~~~~~~ig~a~apTTv~~~Dv-------~~G~~~A~~~l~~~~ 56 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV-DGEPRLIGQAEAPTTVEPGDV-------TIGLNNALEQLEEQT 56 (457)
T ss_pred EEEEEeCCcceEEeEEecc-CCccEEEEEEeCCCCcCcccH-------HHHHHHHHHHHHHhc
Confidence 3589999999999999954 567888877776666533 21 245555555554433
No 188
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=28.49 E-value=60 Score=33.51 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhhcccccCCCCchh
Q 007976 398 DLEYLEAACLLHNIGHFTSKKGYHK 422 (582)
Q Consensus 398 ~~~LL~~Aa~LHdIG~~I~~~~h~k 422 (582)
.+.++.++++|||+|+-..+..--.
T Consensus 164 n~dli~Ag~ilHdigK~~el~~~~~ 188 (287)
T COG3481 164 NRELIYAGAILHDIGKVLELTGPEA 188 (287)
T ss_pred cHHHHHHHHHHhcccccccCCCccc
Confidence 3689999999999999887766444
No 189
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=28.45 E-value=1.9e+02 Score=32.34 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=37.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeee-eeeeeccCCCcCCCCCHHHHHHHHHHHH
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLK-QPVILGRDLSSSCSISTQSQARSVESLL 73 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k-~~vrLg~g~~~~g~Ls~e~i~r~~~~L~ 73 (582)
..-+||||+-|+-+.+++ ++.+....+.. -.|||-+..+.++..+++.+.++.+.+.
T Consensus 133 ~~lviDIGGGStEl~~~~---~~~~~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~ 190 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT---GAQATSLFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAR 190 (496)
T ss_pred CEEEEEecCCeeeEEEec---CCceeeeeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 368999999999999985 34333222222 2356777767777788777766655544
No 190
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=28.38 E-value=95 Score=27.05 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCC---cEEEeChHH-----HHHHHHhhhhccCCCCCCceEEEEeCCCce
Q 007976 105 EFVECVREKVGF---EVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLVLSVDIGGGST 155 (582)
Q Consensus 105 ~fl~~I~~~tG~---~i~VIsgeE-----EA~l~~~gv~~~l~~~~~~~lviDIGGGSt 155 (582)
.+.+.++.-+|- +++.++... +-.-.+......++..++-.++.|++|||.
T Consensus 13 g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 13 GLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp HHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred HHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 444445555555 355554322 111222233344443445568899999984
No 191
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=28.32 E-value=81 Score=33.78 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeCh-HHHHHHH--HhhhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTG-EQEAKFV--YMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsg-eEEA~l~--~~gv~~~l~~~~~~~lv 147 (582)
++++..+.+++++.. ++.+|....+++..-.+.+.+.++ +.|+++.+.++ +.|..+. ..++...-. . +.-.|
T Consensus 10 ~~~~l~~~~~~~~~~--r~livt~~~~~~~g~~~~v~~~L~-~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 84 (375)
T cd08194 10 AVDETGAVLADLGGK--RPLIVTDKVMVKLGLVDKLTDSLK-KEGIESAIFDDVVSEPTDESVEEGVKLAKE-G-GCDVI 84 (375)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhcchHHHHHHHHH-HCCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 555666666666763 567777666664322344444443 45888888865 2232222 111111111 1 11389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 85 IaiGGGS~ 92 (375)
T cd08194 85 IALGGGSP 92 (375)
T ss_pred EEeCCchH
Confidence 99999995
No 192
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=27.74 E-value=2.2e+02 Score=23.40 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcceEEEEeCceeEEEEeeCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCceEEE
Q 007976 480 KFRVLCAIVRLSVILQQNDCVNLRGVDFFHSYEGFKLVIKEARDQPYLPGSSQPTLDNIEAELEKELEHFKKIFKQELLV 559 (582)
Q Consensus 480 ~v~kL~~iLRlA~~Ld~s~~~~i~~i~~~~~~~~~~L~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~f~~~fg~~l~i 559 (582)
+...|++++|++-.|.-+ .+.+.|.+..+ + ..-+++-..++++.|+.+..+
T Consensus 4 ~~AELaAlir~~G~l~~~-------------~~~~~l~~~te----------n------~~vARri~~llk~~f~i~~ei 54 (86)
T PF10298_consen 4 RIAELAALIRFSGSLSIS-------------NGRISLEISTE----------N------AAVARRIYSLLKKLFDIDPEI 54 (86)
T ss_dssp HHHHHHHHHHHHEEECTT-------------TTEEEE--EES-----------------HHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHhCCEEEEE-------------CCEEEEEEEeC----------C------HHHHHHHHHHHHHHhCCCeEE
Confidence 456799999999877644 22345555543 1 367788889999999999999
Q ss_pred EeecCCCCccc
Q 007976 560 VGSSSSSNDRK 570 (582)
Q Consensus 560 ~~~~~~~~~~~ 570 (582)
.+.+.......
T Consensus 55 ~v~~~~~l~k~ 65 (86)
T PF10298_consen 55 SVRRSRNLKKN 65 (86)
T ss_dssp EEEE-SSSBEE
T ss_pred EEecCCCCCCC
Confidence 98877654433
No 193
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=26.66 E-value=99 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccchhhhhhccCCcchHHHHHHHHHHhhccc
Q 007976 361 KAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGH 413 (582)
Q Consensus 361 ~ha~~V~~~a~~LFd~L~~~~~l~~~~~~~~~~~~~~~~~LL~~Aa~LHdIG~ 413 (582)
.||..|....-.+..... +.. .+++-+..-|-+||+.||+|.
T Consensus 5 ~Ha~dV~q~~~~ll~~~~----~~~-------~l~~~e~~alliAal~HDv~H 46 (237)
T PF00233_consen 5 RHAADVLQFVYYLLSNGG----LRE-------YLSPLEIFALLIAALCHDVDH 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHGG----GGT-------TS-HHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHccC----ccc-------cCCHHHHHHHHHHHHHhcCCC
Confidence 588887777665543321 111 357777888999999999995
No 194
>PRK13318 pantothenate kinase; Reviewed
Probab=25.66 E-value=1.2e+02 Score=30.55 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.6
Q ss_pred eEEEEeCCCceEEEEeeCCeEEEEEEEec
Q 007976 145 VLSVDIGGGSTEFVIGKRGKVVFCESVNL 173 (582)
Q Consensus 145 ~lviDIGGGStEl~~~~~~~~~~~~Slpl 173 (582)
.+.+||||-++.+.+++++++....++|.
T Consensus 2 iL~IDIGnT~iK~al~d~g~i~~~~~~~t 30 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGKLVAHWRIST 30 (258)
T ss_pred EEEEEECCCcEEEEEEECCEEEEEEEEeC
Confidence 47899999999999999888877766654
No 195
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.56 E-value=57 Score=27.61 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=15.6
Q ss_pred EEEEEecccceEEEEEEEe
Q 007976 15 FASIDMGTSSFKLLIIRAY 33 (582)
Q Consensus 15 ~AvIDIGSNSiRL~I~e~~ 33 (582)
.-|+|||.|+.||++.=.-
T Consensus 56 r~Vfdi~GN~yRLIvhv~y 74 (98)
T COG4680 56 RVVFDIGGNKYRLIVHVAY 74 (98)
T ss_pred eEEEEcCCCEEEEEEEEEe
Confidence 3699999999999987443
No 196
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.44 E-value=2.4e+02 Score=30.12 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChHH-----HHHHHHhhhhccCCCCCCce
Q 007976 72 LLMFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGEQ-----EAKFVYMGVLQFLPVFDRLV 145 (582)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~I~~~tG~~i~VIsgeE-----EA~l~~~gv~~~l~~~~~~~ 145 (582)
+.+..+.++.+| + ++.+|..... +...=.+.+.+.++ +.|+++.+.++-+ |.-........... .-
T Consensus 14 l~~l~~~~~~~g-~--r~livt~~~~~~~~g~~~~v~~~L~-~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~----~D 85 (380)
T cd08185 14 LNELGEEALKPG-K--KALIVTGNGSSKKTGYLDRVIELLK-QAGVEVVVFDKVEPNPTTTTVMEGAALAREEG----CD 85 (380)
T ss_pred HHHHHHHHHhcC-C--eEEEEeCCCchhhccHHHHHHHHHH-HcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC----CC
Confidence 344444455566 2 5666665443 44332344555444 3588898887643 21111111222222 13
Q ss_pred EEEEeCCCce
Q 007976 146 LSVDIGGGST 155 (582)
Q Consensus 146 lviDIGGGSt 155 (582)
.|+=|||||+
T Consensus 86 ~IiavGGGS~ 95 (380)
T cd08185 86 FVVGLGGGSS 95 (380)
T ss_pred EEEEeCCccH
Confidence 8999999995
No 197
>PHA02902 putative IMV membrane protein; Provisional
Probab=25.13 E-value=1.5e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhhcCCCCCC----------Cchh-hcCCCHHHHHHHHHH
Q 007976 446 VCLQLIALLTRFHRKKFPRS----------HHAF-LEEFPEQAKQKFRVL 484 (582)
Q Consensus 446 ~~~~~iA~iaryhrk~~~~~----------~~~~-~~~L~~~~~~~v~kL 484 (582)
||+|+.|..-||..-..|.. .+.. .+.|++++.+.+.+|
T Consensus 16 vclliya~YrR~kci~sP~~~d~~~~~~l~~d~~F~D~lTpDQirAlHrl 65 (70)
T PHA02902 16 FCLLIYAAYKRYKCIPSPDDRDERFGDTLEDDPLFKDSLTPDQIKALHRL 65 (70)
T ss_pred HHHHHHHHHHHhcCCCCCCCccccccccCCCCchhhccCCHHHHHHHHHH
Confidence 78888888888833322221 1222 367788776655444
No 198
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.74 E-value=3.3e+02 Score=29.09 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHH-HHHH--HhhhhccCCCCCCceEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQE-AKFV--YMGVLQFLPVFDRLVLS 147 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEE-A~l~--~~gv~~~l~~~~~~~lv 147 (582)
++++..+.++.++.. ++.+|....+++..=.+.+.+.+ ++.|+++.+.++-+. ..+. -.++..... . +.-.|
T Consensus 13 ~l~~l~~~l~~~~~~--~~livt~~~~~~~~~~~~v~~~L-~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~-~~D~I 87 (376)
T cd08193 13 SLARLGELLAALGAK--RVLVVTDPGILKAGLIDPLLASL-EAAGIEVTVFDDVEADPPEAVVEAAVEAARA-A-GADGV 87 (376)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcchhhCccHHHHHHHH-HHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-c-CCCEE
Confidence 455555666667763 56667666665533345555544 346888887764321 1111 111111111 1 12389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 88 IaiGGGs~ 95 (376)
T cd08193 88 IGFGGGSS 95 (376)
T ss_pred EEeCCchH
Confidence 99999995
No 199
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=23.29 E-value=1.5e+02 Score=27.81 Aligned_cols=91 Identities=16% Similarity=0.294 Sum_probs=45.9
Q ss_pred EEEEEeCCCCEEEEEee----eeeee---eccCCC--cCCCCCHHHHHHHHHHHHHHHHHH-HHc--CCCCccEEEEEeh
Q 007976 28 LIIRAYPNGKFLTIDTL----KQPVI---LGRDLS--SSCSISTQSQARSVESLLMFRDII-QSH--NISRDHTRAVATA 95 (582)
Q Consensus 28 ~I~e~~~~~~~~~l~~~----k~~vr---Lg~g~~--~~g~Ls~e~i~r~~~~L~~f~~~~-~~~--~v~~~~i~~vATs 95 (582)
+|++++.+|.+++++-. +.++| .|.|-. .+..++-...+.+.+.|..|++.+ +.+ ..++.+|..|+.+
T Consensus 33 vviQlD~~g~~rvv~g~~~~l~g~~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~ 112 (157)
T PF11713_consen 33 VVIQLDIDGEYRVVYGDPSKLQGKVRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCS 112 (157)
T ss_dssp EEEECCCTCGEEEEEEEGGGC-SEEEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS
T ss_pred EEEEEcCCCCEEEEEeChHHcCCCceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEec
Confidence 34455545555555421 22222 455533 444455555556666776666443 344 3457899999988
Q ss_pred hhhhcCC----hHHHHHHHHHHcCCcEEE
Q 007976 96 AVRAAEN----KDEFVECVREKVGFEVDV 120 (582)
Q Consensus 96 A~R~A~N----~~~fl~~I~~~tG~~i~V 120 (582)
-... .. +..|...+.+. |++..|
T Consensus 113 l~~~-~~~~~fa~~f~~~L~~~-gi~~~V 139 (157)
T PF11713_consen 113 LADN-NKQESFALQFAQALKKQ-GINASV 139 (157)
T ss_dssp -S-T-TGGGSHHHHHHHHHHHH-HHCEEE
T ss_pred ccCC-cccccHHHHHHHHHHhc-CCcceE
Confidence 7766 22 44556666555 665554
No 200
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=22.59 E-value=1.7e+02 Score=30.91 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcE--EEeChHHHHHHHHhhhhccCCCCCCceEEE
Q 007976 71 SLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEV--DVLTGEQEAKFVYMGVLQFLPVFDRLVLSV 148 (582)
Q Consensus 71 ~L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i--~VIsgeEEA~l~~~gv~~~l~~~~~~~lvi 148 (582)
++.+..+.++.+| . ++.+|....+.+ ...+.+.+.+++. |+.+ .+.+|+-.-.-.-.++...-. . +.-.||
T Consensus 10 ~~~~l~~~~~~~g-~--~~liv~~~~~~~-~~~~~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~-~-~~d~II 82 (349)
T cd08550 10 AIKEIAAILSTFG-S--KVAVVGGKTVLK-KSRPRFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEE-Q-EADVII 82 (349)
T ss_pred HHHHHHHHHHHcC-C--eEEEEEChHHHH-HHHHHHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHh-c-CCCEEE
Confidence 3444445556677 3 455666555554 4456666665543 7644 455664111111111111111 1 123899
Q ss_pred EeCCCce
Q 007976 149 DIGGGST 155 (582)
Q Consensus 149 DIGGGSt 155 (582)
=|||||+
T Consensus 83 avGGGs~ 89 (349)
T cd08550 83 GVGGGKT 89 (349)
T ss_pred EecCcHH
Confidence 9999996
No 201
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.49 E-value=1.7e+02 Score=30.82 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeChHHHHH--HH-HhhhhccCCCCCCceEEEEe
Q 007976 74 MFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAK--FV-YMGVLQFLPVFDRLVLSVDI 150 (582)
Q Consensus 74 ~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIsgeEEA~--l~-~~gv~~~l~~~~~~~lviDI 150 (582)
+..+.++.++.. .++.+|....+.+.. ++.+.+.++ +.|+++.+.+++.+.. +. ...+...+.. +.-+|+=|
T Consensus 13 ~l~~~~~~~~~~-~kvlivtd~~~~~~~-~~~i~~~L~-~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIai 87 (332)
T cd08549 13 DIGPIINKIGVN-SKIMIVCGNNTYKVA-GKEIIERLE-SNNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGI 87 (332)
T ss_pred HHHHHHHHcCCC-CcEEEEECCcHHHHH-HHHHHHHHH-HcCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEE
Confidence 333444555532 256667766665542 455555543 4588888876543321 11 1111111111 23489999
Q ss_pred CCCce
Q 007976 151 GGGST 155 (582)
Q Consensus 151 GGGSt 155 (582)
||||+
T Consensus 88 GGGsv 92 (332)
T cd08549 88 GSGTI 92 (332)
T ss_pred CCcHH
Confidence 99986
No 202
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=22.30 E-value=1.5e+02 Score=29.31 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=25.1
Q ss_pred eEEEEeCCCceEEEEee-CCeEEEEEEEech
Q 007976 145 VLSVDIGGGSTEFVIGK-RGKVVFCESVNLG 174 (582)
Q Consensus 145 ~lviDIGGGStEl~~~~-~~~~~~~~SlplG 174 (582)
.+.||||..|+-.++++ +++++...+.++-
T Consensus 2 ~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 47899999999999987 6788877777664
No 203
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.11 E-value=1e+02 Score=35.89 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.1
Q ss_pred ceEEEEeCCCceEEEEeeCCeEEEEEEEech
Q 007976 144 LVLSVDIGGGSTEFVIGKRGKVVFCESVNLG 174 (582)
Q Consensus 144 ~~lviDIGGGStEl~~~~~~~~~~~~SlplG 174 (582)
+.+++|+||=||-++.+.+|.+..+...-++
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~e~~v~ 309 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISSETEVA 309 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeeccceEE
Confidence 4899999999999999999887655544444
No 204
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=22.10 E-value=86 Score=33.59 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=55.4
Q ss_pred cCCCCccEEEEEehhhhh-cCChHHHHHHHHHHcCCcEEEeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEEe
Q 007976 82 HNISRDHTRAVATAAVRA-AENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIG 160 (582)
Q Consensus 82 ~~v~~~~i~~vATsA~R~-A~N~~~fl~~I~~~tG~~i~VIsgeEEA~l~~~gv~~~l~~~~~~~lviDIGGGStEl~~~ 160 (582)
..+++...=++-|++.=+ -.|++...+.+.+...++.=-|-- ++-+.. +......++|+|||+++|-++-+
T Consensus 100 Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k--~~v~~A------FA~GrstalVvDiGa~~~svsPV 171 (426)
T KOG0679|consen 100 LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAK--TAVCTA------FANGRSTALVVDIGATHTSVSPV 171 (426)
T ss_pred hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEec--hHHHHH------HhcCCCceEEEEecCCCceeeee
Confidence 456666666677766533 245666777777776666554432 233332 32234568999999999999999
Q ss_pred eCCeEEEE--EEEechHHHHH
Q 007976 161 KRGKVVFC--ESVNLGHVSLS 179 (582)
Q Consensus 161 ~~~~~~~~--~SlplG~vrl~ 179 (582)
.+|-++.. +.=|+|-=-|.
T Consensus 172 ~DG~Vlqk~vvks~laGdFl~ 192 (426)
T KOG0679|consen 172 HDGYVLQKGVVKSPLAGDFLN 192 (426)
T ss_pred ecceEeeeeeEecccchHHHH
Confidence 88876532 23355544333
No 205
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.86 E-value=1.4e+02 Score=31.76 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhh-hhcCChHHHHHHHHHHcCCcEEEeChH-HHHHHHHh--hhhccCCCCCCceEE
Q 007976 72 LLMFRDIIQSHNISRDHTRAVATAAV-RAAENKDEFVECVREKVGFEVDVLTGE-QEAKFVYM--GVLQFLPVFDRLVLS 147 (582)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~-R~A~N~~~fl~~I~~~tG~~i~VIsge-EEA~l~~~--gv~~~l~~~~~~~lv 147 (582)
+++..+.++.+| + ++.+|....+ +.+.-.+.+.+.++ ..|+++.+.++- .+..+.-. ++..... .+.-.|
T Consensus 14 l~~l~~~~~~~g-~--r~lvVt~~~~~~~~g~~~~v~~~L~-~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~I 87 (357)
T cd08181 14 VEKHGEELAALG-K--RALIVTGKSSAKKNGSLDDVTKALE-ELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFV 87 (357)
T ss_pred HHHHHHHHHHcC-C--EEEEEeCCchHhhcCcHHHHHHHHH-HcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEE
Confidence 344444555666 3 5666766554 55544466666654 458888888753 23222211 1111111 112389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 88 IavGGGSv 95 (357)
T cd08181 88 IGIGGGSP 95 (357)
T ss_pred EEeCCchH
Confidence 99999995
No 206
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=21.73 E-value=35 Score=25.68 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.6
Q ss_pred HcCceEEEEeecCCCCcccCcccc
Q 007976 552 IFKQELLVVGSSSSSNDRKDKFTC 575 (582)
Q Consensus 552 ~fg~~l~i~~~~~~~~~~~~~~~~ 575 (582)
-.++++.+...+.++||+|..|.-
T Consensus 20 ~i~~el~i~ltanD~VeaP~DF~~ 43 (53)
T PF06116_consen 20 YITEELYIKLTANDDVEAPKDFAK 43 (53)
T ss_pred HHHHHheeeeecCccccCchhhcc
Confidence 458999999999999999999976
No 207
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=21.51 E-value=3.1e+02 Score=26.82 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=34.5
Q ss_pred eEEEEEecccceEEEEEEEeCCCCEEEEEeeeeeeeeccCCCcCCCCCHHHHHHHHHHHHHHHH
Q 007976 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRD 77 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~f~~ 77 (582)
.|=+||+|..++|..++++..++.+.+ ...+..+. +.+.. |. .++-.+-..+++..|..
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~-~~~~~~ip--~~~~~-~~-~~~lFd~ia~~i~~f~~ 122 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEI-EQEKYKIP--EELMN-GS-GEELFDFIADCIAEFLK 122 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEE-EEEEEE----HHHHT-SB-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCcee-eeccccCC--hHHhc-CC-cccHHHHHHHHHHHHHH
Confidence 688999999999999999986654433 33333322 22111 10 04445555556665554
No 208
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=21.08 E-value=4.1e+02 Score=28.30 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEE--EeCh-HHHHHHHH----hhhhccCCCCCCc
Q 007976 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVD--VLTG-EQEAKFVY----MGVLQFLPVFDRL 144 (582)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~--VIsg-eEEA~l~~----~gv~~~l~~~~~~ 144 (582)
+++..+.++.++.+ ++.+|.-..+++. =.+.+.+.++ ..|+++. ++++ +.+-.+.- ......... +.+
T Consensus 11 l~~l~~~l~~~g~~--rvlvVtd~~v~~~-~~~~l~~~L~-~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~-dr~ 85 (355)
T cd08197 11 LDSVLGYLPELNAD--KYLLVTDSNVEDL-YGHRLLEYLR-EAGAPVELLSVPSGEEHKTLSTLSDLVERALALGA-TRR 85 (355)
T ss_pred HHHHHHHHHhcCCC--eEEEEECccHHHH-HHHHHHHHHH-hcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCC-CCC
Confidence 34444445556653 5666766666554 2334444443 3477654 4543 33222111 111111222 233
Q ss_pred eEEEEeCCCceE
Q 007976 145 VLSVDIGGGSTE 156 (582)
Q Consensus 145 ~lviDIGGGStE 156 (582)
.+++=|||||+-
T Consensus 86 ~~IIAvGGGsv~ 97 (355)
T cd08197 86 SVIVALGGGVVG 97 (355)
T ss_pred cEEEEECCcHHH
Confidence 589999999974
No 209
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=20.42 E-value=1.4e+02 Score=31.54 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCccEEEEEehhhhhcCChHHHHHHHHHHcCCcEEEeC---hHHHHHHHHh-hhhccCCCCCCceEE
Q 007976 72 LLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLT---GEQEAKFVYM-GVLQFLPVFDRLVLS 147 (582)
Q Consensus 72 L~~f~~~~~~~~v~~~~i~~vATsA~R~A~N~~~fl~~I~~~tG~~i~VIs---geEEA~l~~~-gv~~~l~~~~~~~lv 147 (582)
+++..+.++.++.. ++.+|....+.++. .+.+.+.++ ..|+++.+.+ ++.+.-+.-. .+...... +.-.|
T Consensus 11 l~~l~~~~~~~~~~--~~livtd~~~~~~~-~~~v~~~l~-~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~I 84 (348)
T cd08175 11 LERLPEILKEFGYK--KALIVADENTYAAA-GKKVEALLK-RAGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLI 84 (348)
T ss_pred HHHHHHHHHhcCCC--cEEEEECCcHHHHH-HHHHHHHHH-HCCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEE
Confidence 44444555666763 56666655565544 555555554 4688776543 3212222211 11111111 22389
Q ss_pred EEeCCCce
Q 007976 148 VDIGGGST 155 (582)
Q Consensus 148 iDIGGGSt 155 (582)
+=|||||+
T Consensus 85 IaIGGGs~ 92 (348)
T cd08175 85 IAVGSGTI 92 (348)
T ss_pred EEECCcHH
Confidence 99999995
No 210
>PF11762 Arabinose_Iso_C: L-arabinose isomerase C-terminal domain; InterPro: IPR024664 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source []. This entry represents a C-terminal non-catalytic domain in L-arabinose isomerase.; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=20.31 E-value=1.3e+02 Score=26.57 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=15.8
Q ss_pred eEEEEEecccceEEEEEEEe
Q 007976 14 LFASIDMGTSSFKLLIIRAY 33 (582)
Q Consensus 14 ~~AvIDIGSNSiRL~I~e~~ 33 (582)
..+.+|+| |-+||++.+++
T Consensus 32 ~~slvD~G-~rFRLi~n~v~ 50 (115)
T PF11762_consen 32 VVSLVDMG-DRFRLIVNEVD 50 (115)
T ss_dssp EEEEEE-S-SSEEEEEEEEE
T ss_pred EEEEeecC-CcEEEEEEEEE
Confidence 36799999 99999999886
No 211
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=20.13 E-value=97 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.6
Q ss_pred CcchHHHHHHHHHHhhccc
Q 007976 395 EDKDLEYLEAACLLHNIGH 413 (582)
Q Consensus 395 ~~~~~~LL~~Aa~LHdIG~ 413 (582)
++.++.-.-+||+|||+|+
T Consensus 100 ~~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 100 EPAWRYAVFYAALLHDLGK 118 (327)
T ss_pred HhhhHHHHHHHHHHhccCc
Confidence 3455677889999999999
Done!