Query 007977
Match_columns 582
No_of_seqs 483 out of 2749
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 17:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2E-62 4.3E-67 547.9 27.8 383 115-571 13-436 (571)
2 PHA02713 hypothetical protein; 100.0 1.8E-56 3.8E-61 500.4 26.1 362 118-571 5-407 (557)
3 PHA02790 Kelch-like protein; P 100.0 6.6E-53 1.4E-57 464.4 26.0 375 128-572 12-456 (480)
4 PHA03098 kelch-like protein; P 100.0 7.8E-51 1.7E-55 452.9 25.9 362 141-572 7-447 (534)
5 KOG4350 Uncharacterized conser 99.9 2.5E-28 5.3E-33 251.2 8.1 207 143-393 44-254 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 9.4E-22 2E-26 207.5 9.0 202 152-392 130-340 (521)
7 PF07707 BACK: BTB And C-termi 99.7 4.7E-18 1E-22 148.1 5.7 103 276-387 1-103 (103)
8 KOG4682 Uncharacterized conser 99.7 7.6E-17 1.6E-21 167.1 11.0 178 140-353 66-248 (488)
9 KOG4441 Proteins containing BT 99.6 2.9E-15 6.3E-20 168.5 16.1 287 237-573 134-486 (571)
10 smart00875 BACK BTB And C-term 99.6 1.1E-15 2.3E-20 131.9 7.4 99 276-384 1-99 (101)
11 PF00651 BTB: BTB/POZ domain; 99.6 1.6E-15 3.4E-20 133.5 4.5 96 142-268 9-109 (111)
12 KOG4591 Uncharacterized conser 99.5 1.2E-14 2.6E-19 138.6 8.2 153 142-334 65-223 (280)
13 smart00225 BTB Broad-Complex, 99.5 6.2E-14 1.3E-18 116.7 5.5 88 145-263 1-90 (90)
14 PHA02713 hypothetical protein; 99.4 5.9E-13 1.3E-17 149.9 11.2 116 431-571 304-472 (557)
15 PHA02790 Kelch-like protein; P 99.4 9.7E-13 2.1E-17 145.7 11.2 111 431-554 319-452 (480)
16 KOG0783 Uncharacterized conser 99.3 2.6E-12 5.5E-17 142.7 4.8 140 137-312 706-852 (1267)
17 PHA03098 kelch-like protein; P 99.2 2.6E-10 5.6E-15 127.7 16.4 247 270-571 72-398 (534)
18 TIGR03547 muta_rot_YjhT mutatr 99.0 7.7E-10 1.7E-14 117.1 10.8 109 440-573 168-332 (346)
19 PLN02153 epithiospecifier prot 98.9 1E-08 2.2E-13 108.5 11.2 117 431-572 86-261 (341)
20 TIGR03547 muta_rot_YjhT mutatr 98.8 1.2E-08 2.7E-13 107.9 10.9 116 431-571 18-209 (346)
21 PRK14131 N-acetylneuraminic ac 98.8 1.5E-08 3.3E-13 108.9 10.3 107 440-571 189-352 (376)
22 PLN02193 nitrile-specifier pro 98.8 3.7E-08 8E-13 109.1 12.1 117 431-572 229-387 (470)
23 TIGR03548 mutarot_permut cycli 98.8 4.4E-08 9.5E-13 102.9 12.0 117 431-571 73-232 (323)
24 TIGR03548 mutarot_permut cycli 98.8 3.8E-08 8.3E-13 103.3 10.9 119 431-573 124-314 (323)
25 PLN02153 epithiospecifier prot 98.7 5.9E-08 1.3E-12 102.8 11.9 107 431-547 33-193 (341)
26 PLN02193 nitrile-specifier pro 98.6 2.6E-07 5.7E-12 102.4 12.1 107 431-547 176-328 (470)
27 PRK14131 N-acetylneuraminic ac 98.5 5.6E-07 1.2E-11 96.8 11.5 116 431-571 39-230 (376)
28 KOG0783 Uncharacterized conser 98.0 1E-05 2.2E-10 91.3 6.3 95 140-262 555-681 (1267)
29 PF13964 Kelch_6: Kelch motif 97.7 6.6E-05 1.4E-09 57.0 4.5 47 458-538 1-50 (50)
30 KOG1987 Speckle-type POZ prote 97.4 0.0001 2.2E-09 76.6 4.1 126 151-312 110-240 (297)
31 KOG4693 Uncharacterized conser 97.4 0.0011 2.5E-08 67.0 10.6 47 431-481 89-148 (392)
32 PF01344 Kelch_1: Kelch motif; 97.4 0.00011 2.5E-09 54.6 2.4 44 458-535 1-47 (47)
33 KOG0379 Kelch repeat-containin 97.3 0.001 2.2E-08 74.2 10.7 106 432-547 124-275 (482)
34 KOG2838 Uncharacterized conser 97.3 0.00014 3E-09 73.4 2.4 99 123-254 115-217 (401)
35 KOG0511 Ankyrin repeat protein 97.3 6.4E-05 1.4E-09 78.8 0.0 140 146-320 295-442 (516)
36 KOG0379 Kelch repeat-containin 97.2 0.0023 5E-08 71.4 11.0 96 442-547 90-224 (482)
37 KOG2838 Uncharacterized conser 96.7 0.00034 7.3E-09 70.7 -0.9 104 152-280 262-397 (401)
38 KOG4693 Uncharacterized conser 96.6 0.0075 1.6E-07 61.3 7.9 98 441-547 45-191 (392)
39 PF02214 BTB_2: BTB/POZ domain 96.5 0.0055 1.2E-07 52.6 6.0 86 146-262 1-94 (94)
40 smart00612 Kelch Kelch domain. 96.4 0.0034 7.5E-08 45.8 3.2 26 522-547 18-46 (47)
41 KOG4152 Host cell transcriptio 96.4 0.014 3E-07 63.9 8.9 72 431-506 43-148 (830)
42 PF07646 Kelch_2: Kelch motif; 96.1 0.0084 1.8E-07 45.2 4.1 46 458-535 1-49 (49)
43 smart00612 Kelch Kelch domain. 96.1 0.009 2E-07 43.5 4.2 31 439-469 14-47 (47)
44 PF11822 DUF3342: Domain of un 95.7 0.0027 5.8E-08 66.3 0.1 84 151-266 14-100 (317)
45 KOG2716 Polymerase delta-inter 95.7 0.018 3.8E-07 57.9 5.6 85 152-268 15-103 (230)
46 KOG1230 Protein containing rep 95.7 0.066 1.4E-06 57.6 10.0 60 440-503 154-240 (521)
47 KOG1230 Protein containing rep 95.4 0.087 1.9E-06 56.6 9.7 116 440-575 98-255 (521)
48 PF13418 Kelch_4: Galactose ox 94.7 0.021 4.5E-07 42.8 2.1 46 458-536 1-49 (49)
49 KOG1665 AFH1-interacting prote 94.2 0.07 1.5E-06 53.0 5.1 66 196-264 37-105 (302)
50 KOG3473 RNA polymerase II tran 92.9 0.1 2.3E-06 45.2 3.3 71 152-254 28-111 (112)
51 KOG4152 Host cell transcriptio 92.1 0.39 8.5E-06 53.0 7.2 87 455-548 196-333 (830)
52 PF13964 Kelch_6: Kelch motif 92.1 0.21 4.6E-06 37.5 3.8 29 431-459 12-50 (50)
53 smart00512 Skp1 Found in Skp1 91.0 0.16 3.4E-06 44.7 2.4 72 152-255 13-104 (104)
54 PF13854 Kelch_5: Kelch motif 89.9 0.31 6.8E-06 35.5 2.8 23 455-481 1-23 (42)
55 PF13415 Kelch_3: Galactose ox 89.7 0.71 1.5E-05 34.6 4.7 27 440-466 19-48 (49)
56 KOG1724 SCF ubiquitin ligase, 87.4 0.32 7E-06 46.5 1.8 57 209-268 44-125 (162)
57 cd03779 MATH_TRAF1 Tumor Necro 86.3 0.34 7.4E-06 45.6 1.3 32 64-95 115-146 (147)
58 KOG2714 SETA binding protein S 85.7 1.1 2.3E-05 48.7 4.8 91 146-268 13-113 (465)
59 PF01344 Kelch_1: Kelch motif; 85.7 1 2.2E-05 33.0 3.4 26 431-456 12-44 (47)
60 cd03781 MATH_TRAF4 Tumor Necro 85.2 0.38 8.2E-06 45.4 1.0 30 64-95 124-153 (154)
61 PLN02772 guanylate kinase 83.9 2 4.3E-05 46.9 5.9 48 431-481 35-95 (398)
62 PF13415 Kelch_3: Galactose ox 83.4 1.2 2.7E-05 33.2 3.0 24 522-545 22-48 (49)
63 cd03776 MATH_TRAF6 Tumor Necro 82.9 0.55 1.2E-05 43.7 1.1 30 64-95 117-146 (147)
64 PF11822 DUF3342: Domain of un 82.7 1.3 2.8E-05 46.6 3.8 66 257-328 60-125 (317)
65 cd03774 MATH_SPOP Speckle-type 81.6 0.53 1.2E-05 43.2 0.5 36 63-98 102-137 (139)
66 PF01466 Skp1: Skp1 family, di 78.6 0.87 1.9E-05 38.0 0.7 30 238-268 12-41 (78)
67 COG3055 Uncharacterized protei 77.6 7.8 0.00017 41.5 7.5 39 440-481 113-155 (381)
68 KOG1778 CREB binding protein/P 76.3 0.86 1.9E-05 48.2 0.1 132 152-319 37-169 (319)
69 KOG0511 Ankyrin repeat protein 72.5 0.92 2E-05 48.5 -0.8 89 138-259 144-235 (516)
70 smart00202 SR Scavenger recept 71.5 0.87 1.9E-05 39.4 -1.1 59 23-95 24-82 (101)
71 cd00270 MATH_TRAF_C Tumor Necr 67.9 2.6 5.7E-05 39.0 1.3 31 63-95 118-148 (149)
72 PLN02772 guanylate kinase 67.5 12 0.00026 40.9 6.3 57 458-548 24-86 (398)
73 COG3055 Uncharacterized protei 66.4 12 0.00026 40.2 5.8 83 448-573 68-157 (381)
74 cd03773 MATH_TRIM37 Tripartite 65.8 2.7 5.9E-05 37.9 0.9 30 64-95 98-129 (132)
75 cd03777 MATH_TRAF3 Tumor Necro 64.2 5 0.00011 39.3 2.5 30 64-95 154-183 (186)
76 PF00530 SRCR: Scavenger recep 63.3 0.78 1.7E-05 39.1 -3.0 58 25-96 24-81 (99)
77 cd03772 MATH_HAUSP Herpesvirus 62.6 3.7 8.1E-05 37.5 1.2 34 63-96 98-131 (137)
78 cd03780 MATH_TRAF5 Tumor Necro 62.6 3.7 8E-05 38.6 1.2 31 64-94 116-146 (148)
79 COG5201 SKP1 SCF ubiquitin lig 62.2 6.2 0.00014 36.2 2.5 58 211-268 39-120 (158)
80 PF03931 Skp1_POZ: Skp1 family 62.0 10 0.00022 30.1 3.5 49 151-232 11-59 (62)
81 KOG4350 Uncharacterized conser 58.1 14 0.00029 40.3 4.5 28 241-268 148-175 (620)
82 KOG3840 Uncharaterized conserv 56.0 11 0.00024 39.5 3.3 58 198-256 125-185 (438)
83 PF07646 Kelch_2: Kelch motif; 54.2 21 0.00046 26.4 3.9 26 431-456 12-46 (49)
84 PF07707 BACK: BTB And C-termi 46.7 19 0.00042 30.5 3.0 82 244-328 2-101 (103)
85 KOG2715 Uncharacterized conser 44.8 18 0.0004 34.8 2.7 51 217-268 70-120 (210)
86 PF13854 Kelch_5: Kelch motif 42.8 21 0.00045 25.8 2.2 25 534-573 1-25 (42)
87 PF07250 Glyoxal_oxid_N: Glyox 41.6 61 0.0013 33.2 6.1 35 443-481 49-86 (243)
88 PF03089 RAG2: Recombination a 38.8 71 0.0015 33.5 6.0 13 559-571 161-173 (337)
89 cd03775 MATH_Ubp21p Ubiquitin- 38.6 16 0.00035 33.2 1.3 31 63-93 97-131 (134)
90 PF07250 Glyoxal_oxid_N: Glyox 32.4 49 0.0011 33.8 3.7 41 438-481 89-137 (243)
91 KOG2723 Uncharacterized conser 24.3 1E+02 0.0023 31.1 4.3 67 198-267 38-107 (221)
92 cd00121 MATH MATH (meprin and 22.3 46 0.001 28.5 1.3 32 62-95 94-125 (126)
93 KOG2075 Topoisomerase TOP1-int 21.7 1E+02 0.0023 34.4 4.0 45 270-322 184-228 (521)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2e-62 Score=547.91 Aligned_cols=383 Identities=21% Similarity=0.328 Sum_probs=352.9
Q ss_pred eecCchhHHHhHHHHHHHhcCCCCCCCCceeEEEEEE--EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHH
Q 007977 115 VEESPADVGLNLKQCEEATGNIDPAWSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVIL 192 (582)
Q Consensus 115 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~DV~l~v~--~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (582)
....+.|....+++|+.+|+ .+.+|||++.++ +|+|||.||||+||||++
T Consensus 13 ~~~~~~h~~~~l~~l~~lr~-----~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFra----------------------- 64 (571)
T KOG4441|consen 13 EFTDPSHSKFLLQGLNELRE-----EGLLCDVTLLVGDREFPAHRVVLAACSPYFRA----------------------- 64 (571)
T ss_pred ccccHHHHHHHHHHHHHHHH-----hCCCceEEEEECCeeechHHHHHHhccHHHHH-----------------------
Confidence 34578899999999999998 788999999994 899999999999999999
Q ss_pred HHHHHhhccCcccCCccEEEEecCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCC
Q 007977 193 CIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMT 272 (582)
Q Consensus 193 ~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~ 272 (582)
||+++++|+.+++|.|. ++++.+++.+++|+||+++.++. +|+++||.||++||++.+.+.|++||++ +++
T Consensus 65 -----MFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~ 135 (571)
T KOG4441|consen 65 -----MFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLD 135 (571)
T ss_pred -----HhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCC
Confidence 99999999999999998 89999999999999999999999 9999999999999999999999999999 899
Q ss_pred ccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhh
Q 007977 273 CESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWART 352 (582)
Q Consensus 273 ~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~ 352 (582)
++||+.+..+|+.| .|.+|.+.+..|+..||.++.+ ++||++||.+.+..||++|+|+|.+|.+||+++++|++|
T Consensus 136 ~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~ 210 (571)
T KOG4441|consen 136 PSNCLGIRRFAELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKH 210 (571)
T ss_pred HHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhc
Confidence 99999999999998 7999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCChhhHHhhhcccccccccCCCCCHHHHhhhcccCCCC--chHHHHHHHHHHhhhccchhhhhhhcccccccccc-cc
Q 007977 353 HYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYR-RF 429 (582)
Q Consensus 353 d~~~~~~R~~~l~~~LL~~VRfplls~~~L~~~v~~~~l~--~~~~~~ll~eA~~~h~~~p~~q~~l~s~~t~~~pR-~~ 429 (582)
| .+.|++++ ++||++||||+|++.+|.+.+...++. ++.|+.++.+|++||. .|.+++.++.+++++ | ..
T Consensus 211 d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~-~~~~~~~~~~~~t~~--r~~~ 283 (571)
T KOG4441|consen 211 D---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHL-LPQRRPVMQSPRTRP--RRSV 283 (571)
T ss_pred C---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhh-CcccCccccCCCccc--CcCC
Confidence 9 77899999 999999999999999999999988875 7899999999999998 788888889998876 7 45
Q ss_pred ceeEEEeec-------CceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEcccc---------cccCccCC
Q 007977 430 VERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN 490 (582)
Q Consensus 430 ~~~l~v~~~-------~~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~g---------~~~dp~~n 490 (582)
.+.++++|+ .+.+|+|||.++.|.. |+.+|..+++++++|+| |++||+. +.|||++|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~l----Yv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKL----YVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEE----EEEccccCCCcccceEEEecCCCC
Confidence 577887654 3589999999999998 89999999999999555 5999982 34699987
Q ss_pred -------ccCCCCceEEEEEccc-------cCCCCccccccccceeeccC---CCeeecCCCCceeecceeEeccccccc
Q 007977 491 -------MDQQSSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFG 553 (582)
Q Consensus 491 -------M~~~R~~~~~~vl~G~-------~~~~~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~~~~~ 553 (582)
|+++|+.+++++++|+ ++...+.++ ||||| +|+.++||+.++..+|+++++
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~sv------E~YDp~~~~W~~va~m~~~r~~~gv~~~~------ 427 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSV------ECYDPVTNKWTPVAPMLTRRSGHGVAVLG------ 427 (571)
T ss_pred ceeccCCccCccccceeEEECCEEEEEeccccccccccE------EEecCCCCcccccCCCCcceeeeEEEEEC------
Confidence 9999999999987776 667778886 99999 999999999999999988887
Q ss_pred ccccceecCCceEEEcCe
Q 007977 554 IPWTAFMADDSIYFINGN 571 (582)
Q Consensus 554 ~~~~~~~~~~~~~~i~~~ 571 (582)
..+|.|||.
T Consensus 428 ---------g~iYi~GG~ 436 (571)
T KOG4441|consen 428 ---------GKLYIIGGG 436 (571)
T ss_pred ---------CEEEEEcCc
Confidence 578999885
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-56 Score=500.43 Aligned_cols=362 Identities=12% Similarity=0.125 Sum_probs=308.8
Q ss_pred CchhHHHhHHHHHHHhcCCCCCCCCceeEEEEEE---EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHH
Q 007977 118 SPADVGLNLKQCEEATGNIDPAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCI 194 (582)
Q Consensus 118 ~~~~~~~~l~~l~~~~~~~~~~~~~~~DV~l~v~---~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (582)
.+.|....|+.|++++. .+.+|||+|.++ +|+|||+||||+|+||++
T Consensus 5 ~~~h~~~~l~~l~~lr~-----~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~a------------------------- 54 (557)
T PHA02713 5 DIKHNRRVVSNISNLLD-----DDILCDVIITIGDGEEIKAHKTILAAGSKYFRT------------------------- 54 (557)
T ss_pred hhhhhHHHHHHHHHHHh-----CCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHH-------------------------
Confidence 45677889999999998 678999999984 799999999999999999
Q ss_pred HHHhhccCcccCC-ccEEEEecCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCc
Q 007977 195 FLQLFSNGMRESE-QRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTC 273 (582)
Q Consensus 195 ~~~mf~~~~~Es~-~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~ 273 (582)
||+++|+|+. +++|+|+ ++++++|+.+|+|+|||+ ++. +|+++||.||++||++.|++.|++||.+ ++++
T Consensus 55 ---mF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~ 125 (557)
T PHA02713 55 ---LFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNH 125 (557)
T ss_pred ---HhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCc
Confidence 9999999875 7889998 999999999999999998 567 8999999999999999999999999999 8999
Q ss_pred cchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCC-ccccchhhHHHHHHHHHhh
Q 007977 274 ESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDD-LQIASEDAVYDFALKWART 352 (582)
Q Consensus 274 ~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~-L~V~sE~~Vf~aVl~Wi~~ 352 (582)
+||+.++.+|..+ .+..|.++|.+||.+||.++++ +++|++|+.+.|.+||++|+ |+|.+|++||+|+++|++|
T Consensus 126 ~NCl~i~~~~~~~----~~~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~ 200 (557)
T PHA02713 126 DTCIYMYHRLYEM----SHIPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY 200 (557)
T ss_pred cchHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc
Confidence 9999999877666 5677999999999999999999 99999999999999999988 7999999999999999999
Q ss_pred cCCChhhHHhhhcccccccccCCCCCHHHHhhhcccCCCC--chHHHHHHHHHHhhhccchhhhhhhccccccccccccc
Q 007977 353 HYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PELASKVVLESLFFKAETPYRQRALAAEEANSTYRRFV 430 (582)
Q Consensus 353 d~~~~~~R~~~l~~~LL~~VRfplls~~~L~~~v~~~~l~--~~~~~~ll~eA~~~h~~~p~~q~~l~s~~t~~~pR~~~ 430 (582)
| .++|++ + .+||++||||+|++.++. .+.++++. ++.|.+++.+|++++. +. ||.
T Consensus 201 d---~~~r~~-~-~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~~-------------~~--~r~-- 257 (557)
T PHA02713 201 N---YITEEQ-L-LCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNRN-------------II--PRQ-- 257 (557)
T ss_pred C---HHHHHH-H-hhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhcc-------------cC--Ccc--
Confidence 9 555654 5 699999999999999987 44445553 6889999999875432 11 243
Q ss_pred eeEEEeec-----CceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEcccc---------cccCccCC---
Q 007977 431 ERAYKYRP-----VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN--- 490 (582)
Q Consensus 431 ~~l~v~~~-----~~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~g---------~~~dp~~n--- 490 (582)
..+++.++ ...+++|||.+++|.. ||.+|.++++++++|+| |++||.. ++|||..|
T Consensus 258 ~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~I----YviGG~~~~~~~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 258 LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEI----IIAGGYNFNNPSLNKVYKINIENKIHV 333 (557)
T ss_pred eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEE----EEEcCCCCCCCccceEEEEECCCCeEe
Confidence 23443322 2468999999999997 88889999999999555 5999961 25688877
Q ss_pred ----ccCCCCceEEEEEccc-------cCCCCccccccccceeeccC---CCeeecCCCCceeecceeEecccccccccc
Q 007977 491 ----MDQQSSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPW 556 (582)
Q Consensus 491 ----M~~~R~~~~~~vl~G~-------~~~~~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~~~~~~~~ 556 (582)
|+.+|+.+++++++|+ ++...++++ |+||| +|+.++|||.++..+++++++
T Consensus 334 ~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sv------e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~--------- 398 (557)
T PHA02713 334 ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTI------ECYTMGDDKWKMLPDMPIALSSYGMCVLD--------- 398 (557)
T ss_pred eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceE------EEEECCCCeEEECCCCCcccccccEEEEC---------
Confidence 9999999999988777 223334554 99999 899999999999988887776
Q ss_pred cceecCCceEEEcCe
Q 007977 557 TAFMADDSIYFINGN 571 (582)
Q Consensus 557 ~~~~~~~~~~~i~~~ 571 (582)
++||+|||.
T Consensus 399 ------g~IYviGG~ 407 (557)
T PHA02713 399 ------QYIYIIGGR 407 (557)
T ss_pred ------CEEEEEeCC
Confidence 689999985
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.6e-53 Score=464.41 Aligned_cols=375 Identities=14% Similarity=0.159 Sum_probs=292.1
Q ss_pred HHHHHhcCCCCCCCCceeEEEEEE-EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccC
Q 007977 128 QCEEATGNIDPAWSMDLSTVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRES 206 (582)
Q Consensus 128 ~l~~~~~~~~~~~~~~~DV~l~v~-~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es 206 (582)
.+.+++. .+.+|||++.++ +|+|||+||||+||||++ ||+++|+|+
T Consensus 12 ~~~~~~~-----~~~~~~~~~~~~~~~~~HR~VLAa~S~YFra----------------------------MF~~~~~Es 58 (480)
T PHA02790 12 NILALSM-----TKKFKTIIEAIGGNIIVNSTILKKLSPYFRT----------------------------HLRQKYTKN 58 (480)
T ss_pred hHHHHHh-----hhhhceEEEEcCcEEeeehhhhhhcCHHHHH----------------------------HhcCCcccc
Confidence 3445554 456999999884 899999999999999999 999999998
Q ss_pred CccEEEEecCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchh
Q 007977 207 EQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSV 286 (582)
Q Consensus 207 ~~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~ 286 (582)
.+ .|.+...++++++|+.+|+|+|||++.++. +|+++||.||++||++.+++.|++||.+ +|+++||+.++.+|+.|
T Consensus 59 ~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y 135 (480)
T PHA02790 59 KD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY 135 (480)
T ss_pred cc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh
Confidence 54 566532389999999999999999999999 9999999999999999999999999999 89999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhhhhh--HhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhhcCCChhhHHhhh
Q 007977 287 LMADAVQPLTDTAKQFLAARYKDISKFQ--EEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREIL 364 (582)
Q Consensus 287 ~~~~~~~~L~~~~~~fi~~~f~~v~~~~--~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~~~~~R~~~l 364 (582)
+|++|.++|.+||.+||.++.+ + ++|+.||. .+||++|+|+|.+|++||+++++|++|+ ..|.+++
T Consensus 136 ----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l 203 (480)
T PHA02790 136 ----GLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL 203 (480)
T ss_pred ----CHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH
Confidence 8999999999999999999998 6 89999996 6899999999999999999999999996 3455555
Q ss_pred ccccccc-ccCCCCCHHHHhhhcccCCCCchHHHHHHHHHHhhhccc-hhhh---hhhc-cccc----cccc----cccc
Q 007977 365 GSRLGRL-IRFPYMTCRKLKKVLTCNDFDPELASKVVLESLFFKAET-PYRQ---RALA-AEEA----NSTY----RRFV 430 (582)
Q Consensus 365 ~~~LL~~-VRfplls~~~L~~~v~~~~l~~~~~~~ll~eA~~~h~~~-p~~q---~~l~-s~~t----~~~p----R~~~ 430 (582)
.+++++ ||+++|++.++.+ +..++.+++.++... |... +... ...+ .... ....
T Consensus 204 -~~~vr~~ir~~~l~~~~l~~-----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (480)
T PHA02790 204 -LLLIKNVIRSNYLSPRGINN-----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVG 271 (480)
T ss_pred -HHHHHhcCChhhCCHHHHHH-----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEEC
Confidence 566666 8999999888753 223444555444210 1000 0000 0000 0000 0012
Q ss_pred eeEEEeec------CceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEccc-c----cccCccCC------
Q 007977 431 ERAYKYRP------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G----FFLSAHCN------ 490 (582)
Q Consensus 431 ~~l~v~~~------~~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~-g----~~~dp~~n------ 490 (582)
+.+|+.|+ .+++++|||.+++|.. |+.+|..+++++++|+|| ++||. + .+|||..|
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iY----viGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLY----VVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEE----EECCcCCCCceEEEECCCCeEEECC
Confidence 45677654 3579999999999998 888999999999996665 99997 2 45688776
Q ss_pred -ccCCCCceEEEEEccc----cCCC-CccccccccceeeccC---CCeeecCCCCceeecceeEeccc-----------c
Q 007977 491 -MDQQSSFHCFGLFLGM----QEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYR-----------N 550 (582)
Q Consensus 491 -M~~~R~~~~~~vl~G~----~~~~-~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~-----------~ 550 (582)
|+++|..|++++++|+ .|.. ...+ | |+||| +|+.++||+.++..++++++|++ |
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~-v-----e~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~yd 421 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTT-T-----EYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYC 421 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCcc-E-----EEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEEec
Confidence 9999999999998888 2221 2234 3 99999 89999999999988876655532 4
Q ss_pred cccccccce-------------ecCCceEEEcCee
Q 007977 551 LFGIPWTAF-------------MADDSIYFINGNL 572 (582)
Q Consensus 551 ~~~~~~~~~-------------~~~~~~~~i~~~~ 572 (582)
+-+-+|+.. ..+++||+|||..
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 445567533 2356888888863
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.8e-51 Score=452.94 Aligned_cols=362 Identities=14% Similarity=0.164 Sum_probs=296.9
Q ss_pred CCceeEEEEE----EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecC
Q 007977 141 SMDLSTVLRV----KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIH 216 (582)
Q Consensus 141 ~~~~DV~l~v----~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~ 216 (582)
+.+|||+|.+ ++|+|||.|||++|+||++ ||+++|+ +.+|.|+
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~----------------------------mf~~~~~---~~~i~l~-- 53 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKK----------------------------MFKNNFK---ENEINLN-- 53 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHH----------------------------HHhCCCC---CceEEec--
Confidence 4588888887 4899999999999999999 9999997 5778887
Q ss_pred CCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhHH
Q 007977 217 ASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLT 296 (582)
Q Consensus 217 ~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L~ 296 (582)
+ ++++|+.+|+|||||++.++. +++++||.+|++||++.|++.|+++|.+ .++.+||+.++.+|+.| ++..|+
T Consensus 54 ~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~ 126 (534)
T PHA03098 54 I-DYDSFNEVIKYIYTGKINITS-NNVKDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLY 126 (534)
T ss_pred C-CHHHHHHHHHHhcCCceEEcH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHH
Confidence 7 999999999999999999999 9999999999999999999999999999 89999999999999998 789999
Q ss_pred HHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhhcCCChhhHHhhhcccccccccCCC
Q 007977 297 DTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPY 376 (582)
Q Consensus 297 ~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~~~~~R~~~l~~~LL~~VRfpl 376 (582)
++|.+||.+||.++.+ +++|++|+.+.+..||++|+|+|.+|++||++|++|++|| .++|.+++ ++||++||||+
T Consensus 127 ~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~ 201 (534)
T PHA03098 127 SAAYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITF 201 (534)
T ss_pred HHHHHHHHHHHHHHhc-CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccc
Confidence 9999999999999999 9999999999999999999999999999999999999999 77888888 89999999999
Q ss_pred CCHHHHhhhcc------cCCCC-chHHHHHHHHHHhhhccc-hhhhh---hh----------------ccc--c---ccc
Q 007977 377 MTCRKLKKVLT------CNDFD-PELASKVVLESLFFKAET-PYRQR---AL----------------AAE--E---ANS 424 (582)
Q Consensus 377 ls~~~L~~~v~------~~~l~-~~~~~~ll~eA~~~h~~~-p~~q~---~l----------------~s~--~---t~~ 424 (582)
|++++|.+++. .+++. ++.|..++.++..++... |...+ .+ ..+ + ...
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIID 281 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccC
Confidence 99999998774 44443 667888888887654200 10000 00 000 0 000
Q ss_pred cc-ccc-c-----eeEEEeecC-------ceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEcccc-----
Q 007977 425 TY-RRF-V-----ERAYKYRPV-------KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQG----- 482 (582)
Q Consensus 425 ~p-R~~-~-----~~l~v~~~~-------~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~g----- 482 (582)
.| +.. . +.+|+.|+. +.+.+|||.+++|.. |+.+|.++++++++|+|| ++||.+
T Consensus 282 ~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v~GG~~~~~~~ 357 (534)
T PHA03098 282 IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----VIGGIYNSISL 357 (534)
T ss_pred ccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----EEeCCCCCEec
Confidence 01 111 1 356776542 468899999999988 777899999999996655 999972
Q ss_pred ---cccCccCC-------ccCCCCceEEEEEccc----cC---C-CCccccccccceeeccC---CCeeecCCCCceeec
Q 007977 483 ---FFLSAHCN-------MDQQSSFHCFGLFLGM----QE---K-GSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFT 541 (582)
Q Consensus 483 ---~~~dp~~n-------M~~~R~~~~~~vl~G~----~~---~-~~lssvV~~~~aErYdP---~W~~va~m~~~~~~~ 541 (582)
..|||.++ |+.+|..|++++++|+ .| . ..++++ |+||| +|+.+++||.++..+
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v------~~yd~~t~~W~~~~~~p~~r~~~ 431 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV------ECFSLNTNKWSKGSPLPISHYGG 431 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceE------EEEeCCCCeeeecCCCCccccCc
Confidence 24588776 9999999999987766 12 1 223454 99999 899999999988876
Q ss_pred ceeEecccccccccccceecCCceEEEcCee
Q 007977 542 GGKAVGYRNLFGIPWTAFMADDSIYFINGNL 572 (582)
Q Consensus 542 g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (582)
++++++ +++|++||..
T Consensus 432 ~~~~~~---------------~~iyv~GG~~ 447 (534)
T PHA03098 432 CAIYHD---------------GKIYVIGGIS 447 (534)
T ss_pred eEEEEC---------------CEEEEECCcc
Confidence 655554 6788888853
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=251.16 Aligned_cols=207 Identities=23% Similarity=0.332 Sum_probs=189.1
Q ss_pred ceeEEEEEE--EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCH
Q 007977 143 DLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEE 220 (582)
Q Consensus 143 ~~DV~l~v~--~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~ 220 (582)
.+||+|.++ +|+|||+|||+||.|||+ |+.+||+|+.+..|+|+ +-..
T Consensus 44 y~DVtfvve~~rfpAHRvILAaRs~yFRA----------------------------lLYgGm~Es~q~~ipLq--~t~~ 93 (620)
T KOG4350|consen 44 YSDVTFVVEDTRFPAHRVILAARSSYFRA----------------------------LLYGGMQESHQQLIPLQ--ETNS 93 (620)
T ss_pred ccceEEEEeccccchhhhhHHHHHHHHHH----------------------------HHhhhhhhhhhcccccc--cccH
Confidence 578888884 799999999999999999 99999999999999998 7789
Q ss_pred HHHHHHHhcccCCccccCc--cchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhHHHH
Q 007977 221 AALMELLNFMYSSTLSTTT--PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDT 298 (582)
Q Consensus 221 ~~f~~lL~fiYTg~l~i~~--~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L~~~ 298 (582)
++|+.+|+|||||++.++. .+-+++.|.+|++|+...|..+..+||++ -+..+|+|.++..|..| +..+|.+.
T Consensus 94 eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~ 168 (620)
T KOG4350|consen 94 EAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDY 168 (620)
T ss_pred HHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHH
Confidence 9999999999999998743 26789999999999999999999999999 59999999999999988 67999999
Q ss_pred HHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhhcCCChhhHHhhhcccccccccCCCCC
Q 007977 299 AKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFPYMT 378 (582)
Q Consensus 299 ~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~~~~~R~~~l~~~LL~~VRfplls 378 (582)
|..|+.+|-.++.. .+.|..|+.+.|.++|.+|..- +-|.++|.||.+|-++| ..+ . . +.|++.||+|+|+
T Consensus 169 C~mfmDrnA~~lL~-~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~N---ske--~-~-k~~~~~VRLPLm~ 239 (620)
T KOG4350|consen 169 CMMFMDRNADQLLE-DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNN---SKE--A-S-KVLLELVRLPLMT 239 (620)
T ss_pred HHHHHhcCHHhhhc-CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcC---chh--h-H-HHHHHHHhhhhcc
Confidence 99999999999999 9999999999999999999886 57999999999999998 222 2 2 5799999999999
Q ss_pred HHHHhhhcccCCCCc
Q 007977 379 CRKLKKVLTCNDFDP 393 (582)
Q Consensus 379 ~~~L~~~v~~~~l~~ 393 (582)
..+|.++|....+.+
T Consensus 240 lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 240 LTELLNVVRPSGLLS 254 (620)
T ss_pred HHHHHhccCcccCcC
Confidence 999999999888764
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.85 E-value=9.4e-22 Score=207.45 Aligned_cols=202 Identities=25% Similarity=0.406 Sum_probs=181.4
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCHHHHHHHHhccc
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 231 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~f~~lL~fiY 231 (582)
.+||||.|||..|.+|.+ ||++++.|....+|.++ +++|.+|..+|+|||
T Consensus 130 ~~paHk~vla~gS~VFda----------------------------Mf~g~~a~~~s~ei~lp--dvepaaFl~~L~flY 179 (521)
T KOG2075|consen 130 RIPAHKLVLADGSDVFDA----------------------------MFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLY 179 (521)
T ss_pred ccchhhhhhhcchHHHHH----------------------------HhccCcccccCceeecC--CcChhHhHHHHHHHh
Confidence 699999999999999999 99999999877889988 999999999999999
Q ss_pred CCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccc-cchhhhhhhhhhHHHHHHHHHHHhhhhh
Q 007977 232 SSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDL-PSSVLMADAVQPLTDTAKQFLAARYKDI 310 (582)
Q Consensus 232 Tg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~l-a~~~~~~~~~~~L~~~~~~fi~~~f~~v 310 (582)
++++.+.. ++++.+|.+|++|-++.|.+.|.+||+. .+...|.+..+.. |..+ .-++|.+.|.+-|..+|++.
T Consensus 180 sdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~a 253 (521)
T KOG2075|consen 180 SDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDA 253 (521)
T ss_pred cchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhh
Confidence 99999999 9999999999999999999999999999 6888888776655 5443 56899999999999999999
Q ss_pred hhhhHhhcCCC--HHHHHHHhcCCCccccchhhHHHHHHHHHhhcCC------ChhhHHhhhcccccccccCCCCCHHHH
Q 007977 311 SKFQEEVLNLP--LAGIEAVLASDDLQIASEDAVYDFALKWARTHYP------KLEERREILGSRLGRLIRFPYMTCRKL 382 (582)
Q Consensus 311 ~~~~~~f~~L~--~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~------~~~~R~~~l~~~LL~~VRfplls~~~L 382 (582)
.. .+.|.... .+.++++|+++.|.+. |..+|+|+++|+....+ ..+.+++.+ ...+..||||+|..+++
T Consensus 254 l~-~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eef 330 (521)
T KOG2075|consen 254 LT-PEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEF 330 (521)
T ss_pred hC-ccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhh
Confidence 99 99999988 9999999999999985 99999999999988632 144566777 89999999999999999
Q ss_pred hhhcccCCCC
Q 007977 383 KKVLTCNDFD 392 (582)
Q Consensus 383 ~~~v~~~~l~ 392 (582)
..-+++..+.
T Consensus 331 a~~~e~sgIl 340 (521)
T KOG2075|consen 331 ARGVEQSGIL 340 (521)
T ss_pred ccCccccCCc
Confidence 8777766664
No 7
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.72 E-value=4.7e-18 Score=148.12 Aligned_cols=103 Identities=32% Similarity=0.612 Sum_probs=92.7
Q ss_pred hhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhhcCC
Q 007977 276 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 355 (582)
Q Consensus 276 ~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~ 355 (582)
|+.++.+|..| ++..|.++|.+||.+||.++.+ +++|.+||.+.+..||++++|+|.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 78899999988 7899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcccccccccCCCCCHHHHhhhcc
Q 007977 356 KLEERREILGSRLGRLIRFPYMTCRKLKKVLT 387 (582)
Q Consensus 356 ~~~~R~~~l~~~LL~~VRfplls~~~L~~~v~ 387 (582)
.++|.+++ ++||++||||+|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 77798888 8999999999999999988763
No 8
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.69 E-value=7.6e-17 Score=167.11 Aligned_cols=178 Identities=16% Similarity=0.277 Sum_probs=164.7
Q ss_pred CCCceeEEEEE--EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEe--c
Q 007977 140 WSMDLSTVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLR--I 215 (582)
Q Consensus 140 ~~~~~DV~l~v--~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~--~ 215 (582)
.+..+||++.+ .+.+.||+-| ..|+||.+ ||+|.++|+.+..|.|. +
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL-~QS~yf~s----------------------------mf~Gtw~es~~~iIqleI~D 116 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYL-FQSEYFKS----------------------------MFSGTWKESSMNIIQLEIPD 116 (488)
T ss_pred cCCCcceehhhccceeeeeeeee-eccHHHHH----------------------------HhccccChhhCceEEEEcCC
Confidence 34579999987 5899999999 45899999 99999999999887766 4
Q ss_pred CCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhH
Q 007977 216 HASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 295 (582)
Q Consensus 216 ~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L 295 (582)
+.++.++|..++--+|.++++|+. +.+..+|.+|.++++++|.+.|.+.|.+ .++++|++.++..+..| +...+
T Consensus 117 p~Id~~al~~a~gsLY~dEveI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~v 190 (488)
T KOG4682|consen 117 PNIDVVALQVAFGSLYRDEVEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESV 190 (488)
T ss_pred CcccHHHHHHHHhhhhhhheeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHH
Confidence 679999999999999999999999 9999999999999999999999999999 89999999999999999 78999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccc-hhhHHHHHHHHHhhc
Q 007977 296 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIAS-EDAVYDFALKWARTH 353 (582)
Q Consensus 296 ~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~s-E~~Vf~aVl~Wi~~d 353 (582)
++.|.+++..|+-.+.. ..-+.+++.+.+.++|.|.+|-|-+ |..+|..+..|+--.
T Consensus 191 k~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfLq 248 (488)
T KOG4682|consen 191 KKKCLEWLLNNLMTIQN-VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFLQ 248 (488)
T ss_pred HHHHHHHHHHhhHhhhh-HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHhh
Confidence 99999999999999998 7788899999999999999998876 999999999998543
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.63 E-value=2.9e-15 Score=168.53 Aligned_cols=287 Identities=15% Similarity=0.160 Sum_probs=169.5
Q ss_pred cCccchHHHHHHhhchhhhhhhhhhhhhhccc-----------CcCCccchhhhccccchhhhhhhhhhHHHHHHHHHHH
Q 007977 237 TTTPTALLDVLMAADKFEVASCMRYCSRLLRN-----------LPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA 305 (582)
Q Consensus 237 i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~-----------l~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~ 305 (582)
+.. +|.+.+...|+.+...+|.+....|+.. +.++.+....++.-=+.. . ..-..+.+++.+++..
T Consensus 134 l~~-~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~-v-~~E~~vf~a~~~Wv~~ 210 (571)
T KOG4441|consen 134 LDP-SNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLN-V-DSEEEVFEAAMRWVKH 210 (571)
T ss_pred CCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCC-c-CCHHHHHHHHHHHHhc
Confidence 345 8999999999999999998777766543 123333333333211110 0 1134567888888863
Q ss_pred -------hhhhhhhhhHhhcCCCHHHHHHHhcCCCcccc---chhhHHHHHHHHHhhcCCChhhHHhhhcccccccccCC
Q 007977 306 -------RYKDISKFQEEVLNLPLAGIEAVLASDDLQIA---SEDAVYDFALKWARTHYPKLEERREILGSRLGRLIRFP 375 (582)
Q Consensus 306 -------~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~---sE~~Vf~aVl~Wi~~d~~~~~~R~~~l~~~LL~~VRfp 375 (582)
++.++.+ .--+..|+...+...+..+.+.-. .-..+.++. +|-... .++. .++..|
T Consensus 211 d~~~R~~~~~~ll~-~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~-~~~~~~-----~~~~-----~~~~~~-- 276 (571)
T KOG4441|consen 211 DFEEREEHLPALLE-AVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK-KYHLLP-----QRRP-----VMQSPR-- 276 (571)
T ss_pred CHhhHHHHHHHHHH-hcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH-HHhhCc-----ccCc-----cccCCC--
Confidence 3344555 555666888888888777664321 122233333 443321 1110 011111
Q ss_pred CCCHHH-Hhh-hcccCCCCchHHHHHHHHHHhhhccchhhh-hhhccccccccccccc------eeEEEeec-------C
Q 007977 376 YMTCRK-LKK-VLTCNDFDPELASKVVLESLFFKAETPYRQ-RALAAEEANSTYRRFV------ERAYKYRP-------V 439 (582)
Q Consensus 376 lls~~~-L~~-~v~~~~l~~~~~~~ll~eA~~~h~~~p~~q-~~l~s~~t~~~pR~~~------~~l~v~~~-------~ 439 (582)
..+.. ..+ ++.--.. .. ..+.+.....|. |..+ ...-++ .+.+|... ..+|+.|+ +
T Consensus 277 -t~~r~~~~~~l~~vGG~-~~-~~~~~~~ve~yd---~~~~~w~~~a~--m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l 348 (571)
T KOG4441|consen 277 -TRPRRSVSGKLVAVGGY-NR-QGQSLRSVECYD---PKTNEWSSLAP--MPSPRCRVGVAVLNGKLYVVGGYDSGSDRL 348 (571)
T ss_pred -cccCcCCCCeEEEECCC-CC-CCcccceeEEec---CCcCcEeecCC--CCcccccccEEEECCEEEEEccccCCCccc
Confidence 11100 000 0000000 00 000000000011 1111 000000 01123322 34677544 3
Q ss_pred ceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEccc--------ccccCccCC-------ccCCCCceEEE
Q 007977 440 KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ--------GFFLSAHCN-------MDQQSSFHCFG 501 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~--------g~~~dp~~n-------M~~~R~~~~~~ 501 (582)
+++++|||.+++|.. |+.+|..+++++++|+|| ++||+ .++|||.+| |.++|+.|+++
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iY----avGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~ 424 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLY----AVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA 424 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEE----EEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE
Confidence 689999999999998 889999999999997766 99998 256799987 99999999999
Q ss_pred EEccc-------cCCC-CccccccccceeeccC---CCeeecCCCCceeecceeEecccccccccccceecCCceEEEcC
Q 007977 502 LFLGM-------QEKG-SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFING 570 (582)
Q Consensus 502 vl~G~-------~~~~-~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~ 570 (582)
+++|+ ++.. .+.++ ||||| +|+.++||++++..+|.++++ +.||.|||
T Consensus 425 ~~~g~iYi~GG~~~~~~~l~sv------e~YDP~t~~W~~~~~M~~~R~~~g~a~~~---------------~~iYvvGG 483 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSSNCLNSV------ECYDPETNTWTLIAPMNTRRSGFGVAVLN---------------GKIYVVGG 483 (571)
T ss_pred EECCEEEEEcCcCCCccccceE------EEEcCCCCceeecCCcccccccceEEEEC---------------CEEEEECC
Confidence 98888 2333 56775 99999 999999999999999988887 78999999
Q ss_pred eee
Q 007977 571 NLH 573 (582)
Q Consensus 571 ~~~ 573 (582)
.-.
T Consensus 484 ~~~ 486 (571)
T KOG4441|consen 484 FDG 486 (571)
T ss_pred ccC
Confidence 643
No 10
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.61 E-value=1.1e-15 Score=131.94 Aligned_cols=99 Identities=28% Similarity=0.512 Sum_probs=89.8
Q ss_pred hhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHHHhhcCC
Q 007977 276 ALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKWARTHYP 355 (582)
Q Consensus 276 ~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~Wi~~d~~ 355 (582)
|+.++.+|+.| ++..|.++|.+||.+||..+.+ +++|.+||.+.+..+|++|+|+|.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 45677778776 7899999999999999999999 8999999999999999999999988999999999999998
Q ss_pred ChhhHHhhhcccccccccCCCCCHHHHhh
Q 007977 356 KLEERREILGSRLGRLIRFPYMTCRKLKK 384 (582)
Q Consensus 356 ~~~~R~~~l~~~LL~~VRfplls~~~L~~ 384 (582)
...|. ++ ..|+++||||+|++.+|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 66 8999999999999998865
No 11
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.57 E-value=1.6e-15 Score=133.48 Aligned_cols=96 Identities=26% Similarity=0.476 Sum_probs=84.2
Q ss_pred CceeEEEEEE---EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccC-cccCCccEEEEecCC
Q 007977 142 MDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG-MRESEQRYVTLRIHA 217 (582)
Q Consensus 142 ~~~DV~l~v~---~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~-~~Es~~~~v~l~~~~ 217 (582)
..+|++|.++ +|+|||.||+++||||++ ||.+. +.+.....|.++ +
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~----------------------------~~~~~~~~~~~~~~i~~~--~ 58 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAARSPYFRN----------------------------LFEGSKFKESTVPEISLP--D 58 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHHBHHHHH----------------------------HHTTTTSTTSSEEEEEET--T
T ss_pred CCCCEEEEECCCEEEeechhhhhccchhhhh----------------------------cccccccccccccccccc--c
Confidence 4889999885 799999999999999999 99987 566555567776 9
Q ss_pred CCHHHHHHHHhcccCCccccC-ccchHHHHHHhhchhhhhhhhhhhhhhccc
Q 007977 218 SEEAALMELLNFMYSSTLSTT-TPTALLDVLMAADKFEVASCMRYCSRLLRN 268 (582)
Q Consensus 218 v~~~~f~~lL~fiYTg~l~i~-~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~ 268 (582)
+++++|+.+++|+|+|++.++ . +++.+++.+|++|+++.|++.|.++|.+
T Consensus 59 ~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 59 VSPEAFEAFLEYMYTGEIEINSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp SCHHHHHHHHHHHHHSEEEEE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ccccccccccccccCCcccCCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999998 7 8999999999999999999999999865
No 12
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=138.59 Aligned_cols=153 Identities=16% Similarity=0.310 Sum_probs=130.8
Q ss_pred CceeEEEEEE-----EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecC
Q 007977 142 MDLSTVLRVK-----TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIH 216 (582)
Q Consensus 142 ~~~DV~l~v~-----~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~ 216 (582)
.++|+.|.++ .++|||.||||||.+.+ |.|+-.|. .....+.
T Consensus 65 qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk------------------------------faN~~dek-se~~~~d-- 111 (280)
T KOG4591|consen 65 QFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK------------------------------FANGGDEK-SEELDLD-- 111 (280)
T ss_pred cccceeEEecCCccccCchhhhhhhhhcchhh------------------------------hccCCCcc-hhhhccc--
Confidence 4899999984 69999999999998763 34544332 2334444
Q ss_pred CCCHHHHHHHHhcccCCccccCc-cchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhH
Q 007977 217 ASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPL 295 (582)
Q Consensus 217 ~v~~~~f~~lL~fiYTg~l~i~~-~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L 295 (582)
++++++|..+++||||+++.... .+-+.++...|.+|+++.|++.|++-+-. -+.++||+.++++|+.. +...|
T Consensus 112 Dad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL 186 (280)
T KOG4591|consen 112 DADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQL 186 (280)
T ss_pred ccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHH
Confidence 99999999999999999998743 25688999999999999999999999999 59999999999999987 67899
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCc
Q 007977 296 TDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDL 334 (582)
Q Consensus 296 ~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L 334 (582)
...|-+.|+.++.++-+ ++|.+++...+..++.+..-
T Consensus 187 ~n~~~eiIA~~W~dL~~--a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 187 MNVAAEIIAGAWDDLGK--ADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHHHHHHhhccccCh--HHHHhccHHHHHHHHcCCCc
Confidence 99999999999999976 89999999999999987653
No 13
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.46 E-value=6.2e-14 Score=116.68 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=80.3
Q ss_pred eEEEEE--EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCHHH
Q 007977 145 STVLRV--KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAA 222 (582)
Q Consensus 145 DV~l~v--~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~ 222 (582)
||++.+ ++|++||.+|+++|+||++ ||.+++.++....+.++ +.++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~----------------------------~~~~~~~~~~~~~i~l~--~~~~~~ 50 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKA----------------------------LFSGDFKESKKSEIYLD--DVSPED 50 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHH----------------------------HHcCCCccCCCCEEEec--CCCHHH
Confidence 456666 5899999999999999999 99998887777888887 899999
Q ss_pred HHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhh
Q 007977 223 LMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCS 263 (582)
Q Consensus 223 f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~ 263 (582)
|+.+|+|+|++++.++. .++.+++.+|++|+++.|++.|+
T Consensus 51 f~~~l~~ly~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 51 FRALLEFLYTGKLDLPE-ENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHeecCceeecCH-HHHHHHHHHHHHHCcHHHHhhhC
Confidence 99999999999999998 79999999999999999999985
No 14
>PHA02713 hypothetical protein; Provisional
Probab=99.42 E-value=5.9e-13 Score=149.91 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=94.3
Q ss_pred eeEEEeec-------CceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEccc-c-------cccCccCC--
Q 007977 431 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ-G-------FFLSAHCN-- 490 (582)
Q Consensus 431 ~~l~v~~~-------~~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~-g-------~~~dp~~n-- 490 (582)
+.+|+.|+ .+.+++|||.+++|.. |+.+|.++++++++|+|| ++||. | ++|||.+|
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EECCcCCCCCCceEEEEECCCCeE
Confidence 45777655 3579999999999988 888999999999997666 99997 2 35699876
Q ss_pred -----ccCCCCceEEEEEccc----cCCC---------------------CccccccccceeeccC---CCeeecCCCCc
Q 007977 491 -----MDQQSSFHCFGLFLGM----QEKG---------------------SVSFAVDYEFAARIKP---TEEYVSKYKGN 537 (582)
Q Consensus 491 -----M~~~R~~~~~~vl~G~----~~~~---------------------~lssvV~~~~aErYdP---~W~~va~m~~~ 537 (582)
|+++|..+++++++|+ .|.. .+++ | |+||| +|+.++||+.+
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcc
Confidence 9999999999988777 1211 1334 3 99999 89999999999
Q ss_pred eeecceeEecccccccccccceecCCceEEEcCe
Q 007977 538 YTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 538 ~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
+..+|.++++ ++||++||.
T Consensus 454 r~~~~~~~~~---------------~~IYv~GG~ 472 (557)
T PHA02713 454 TIRPGVVSHK---------------DDIYVVCDI 472 (557)
T ss_pred cccCcEEEEC---------------CEEEEEeCC
Confidence 9998888777 689999985
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=99.40 E-value=9.7e-13 Score=145.71 Aligned_cols=111 Identities=18% Similarity=0.009 Sum_probs=89.4
Q ss_pred eeEEEeecC---ceEEeeeCccCeEEE---ccccccceeEEeeCCeeeceeEEEccc------ccccCccCC-------c
Q 007977 431 ERAYKYRPV---KVVEFELPRQQCVVY---LDLKREECAHLFPAGRIYSQAFHLGGQ------GFFLSAHCN-------M 491 (582)
Q Consensus 431 ~~l~v~~~~---~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g~IYn~iYviGG~------g~~~dp~~n-------M 491 (582)
+.+|+.|+. +++|+|||.+++|.. |+.+|.++++++++|+|| ++||. ..+|||.+| |
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467776653 679999999999988 888999999999997666 99997 235799887 9
Q ss_pred cCCCCceEEEEEccccC-CCCccccccccceeeccC---CCeeecCCCCceeecceeEecccccccc
Q 007977 492 DQQSSFHCFGLFLGMQE-KGSVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGI 554 (582)
Q Consensus 492 ~~~R~~~~~~vl~G~~~-~~~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~~~~~~ 554 (582)
+.+|..+++++++|+.. -|. .+ |+||| +|+.++||+.++..+|.++++++ +|.+
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG--~~------e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~-IYvi 452 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR--NA------EFYCESSNTWTLIDDPIYPRDNPELIIVDNK-LLLI 452 (480)
T ss_pred CCccccceEEEECCEEEEECC--ce------EEecCCCCcEeEcCCCCCCccccEEEEECCE-EEEE
Confidence 99999999999999821 111 33 99999 99999999999999987766653 4443
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.27 E-value=2.6e-12 Score=142.72 Aligned_cols=140 Identities=15% Similarity=0.258 Sum_probs=119.1
Q ss_pred CCCCCCceeEEEEEE-EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEec
Q 007977 137 DPAWSMDLSTVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRI 215 (582)
Q Consensus 137 ~~~~~~~~DV~l~v~-~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~ 215 (582)
|-....||+|+++-+ .++||+++|.||++||.. ||..-+.|+.. |++..
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~s----------------------------mf~~~w~E~sS--~t~~~ 755 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSS----------------------------MFQFVWMESSS--ITVNL 755 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHH----------------------------HHHHHHhhhcc--ceeec
Confidence 445667888888775 499999999999999999 99888888765 44442
Q ss_pred CCCCHHHHHHHHhccc-CCcccc-----CccchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhh
Q 007977 216 HASEEAALMELLNFMY-SSTLST-----TTPTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMA 289 (582)
Q Consensus 216 ~~v~~~~f~~lL~fiY-Tg~l~i-----~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~ 289 (582)
..+..+.++.+|+|+| +++..+ .. +-+.++|..||.|-+.+|+..|+..|.+ .++..+|-.++++|..|
T Consensus 756 ~p~~~e~m~ivLdylYs~d~~~~~k~~~~~-dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY--- 830 (1267)
T KOG0783|consen 756 SPLTVEHMSIVLDYLYSDDKVELFKDLKES-DFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY--- 830 (1267)
T ss_pred CcchHHHHHHHHHHHHccchHHHHhccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh---
Confidence 2566999999999999 555543 22 5688999999999999999999999998 79999999999999998
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhh
Q 007977 290 DAVQPLTDTAKQFLAARYKDISK 312 (582)
Q Consensus 290 ~~~~~L~~~~~~fi~~~f~~v~~ 312 (582)
++++|+..|++||+.|+..+..
T Consensus 831 -~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 831 -HAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred -hHHHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999888775
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.20 E-value=2.6e-10 Score=127.70 Aligned_cols=247 Identities=12% Similarity=0.091 Sum_probs=145.8
Q ss_pred cCCccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHHhcCCCccccchhhHHHHHHHH
Q 007977 270 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAVLASDDLQIASEDAVYDFALKW 349 (582)
Q Consensus 270 ~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~lL~sd~L~V~sE~~Vf~aVl~W 349 (582)
.++.+|+..++..|..+ ..+.|++.|.+|+.+++..- . .-++..+. .. .+-.++.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~~-n-c~~~~~~a-----~~--------~~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDDN-N-CIDIYRFS-----FF--------YGCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCHh-H-HHHHHHHH-----HH--------cCcHHHHHHHHHH
Confidence 57889999999999988 67999999999998765321 1 11111111 00 1223555666667
Q ss_pred HhhcCCChhhHHhhhcccccccccCCCCCHHHHhhhcccCCCC--ch-HHHHHHHHH------------------Hhhhc
Q 007977 350 ARTHYPKLEERREILGSRLGRLIRFPYMTCRKLKKVLTCNDFD--PE-LASKVVLES------------------LFFKA 408 (582)
Q Consensus 350 i~~d~~~~~~R~~~l~~~LL~~VRfplls~~~L~~~v~~~~l~--~~-~~~~ll~eA------------------~~~h~ 408 (582)
+..+ + .++.+.=.|..++.+.|.++++++.+. ++ ...+.+..- .++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 6665 2 334444456677777777777766663 11 111111111 11111
Q ss_pred cchhh-h------------hhhccccc------------cccccc--cceeEEEeec----CceEEeeeCccCeEEEcc-
Q 007977 409 ETPYR-Q------------RALAAEEA------------NSTYRR--FVERAYKYRP----VKVVEFELPRQQCVVYLD- 456 (582)
Q Consensus 409 ~~p~~-q------------~~l~s~~t------------~~~pR~--~~~~l~v~~~----~~~ve~ydP~~~~W~~L~- 456 (582)
..+.. . +....++. ...||. ....+++.++ ...+.+|++.+++|..++
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 281 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIID 281 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccC
Confidence 00000 0 00000000 000121 1122332222 235567899999999853
Q ss_pred cc-ccceeEEeeCCeeeceeEEEcccc---------cccCccCC-------ccCCCCceEEEEEccc-------cCCCCc
Q 007977 457 LK-REECAHLFPAGRIYSQAFHLGGQG---------FFLSAHCN-------MDQQSSFHCFGLFLGM-------QEKGSV 512 (582)
Q Consensus 457 ~~-R~~~~vavl~g~IYn~iYviGG~g---------~~~dp~~n-------M~~~R~~~~~~vl~G~-------~~~~~l 512 (582)
.+ +..+++++++++| |++||.. ..|||.++ |+.+|..|++++++|+ ++.+.+
T Consensus 282 ~~~~~~~~~~~~~~~l----yv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~ 357 (534)
T PHA03098 282 IHYVYCFGSVVLNNVI----YFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISL 357 (534)
T ss_pred ccccccceEEEECCEE----EEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEec
Confidence 23 3446889999555 5999971 23577776 8999999999987766 222334
Q ss_pred cccccccceeeccC---CCeeecCCCCceeecceeEecccccccccccceecCCceEEEcCe
Q 007977 513 SFAVDYEFAARIKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 513 ssvV~~~~aErYdP---~W~~va~m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
+++ |+||| +|+.++|||.++..+++++++ +++|++||.
T Consensus 358 ~~v------~~yd~~~~~W~~~~~lp~~r~~~~~~~~~---------------~~iYv~GG~ 398 (534)
T PHA03098 358 NTV------ESWKPGESKWREEPPLIFPRYNPCVVNVN---------------NLIYVIGGI 398 (534)
T ss_pred ceE------EEEcCCCCceeeCCCcCcCCccceEEEEC---------------CEEEEECCc
Confidence 554 99999 999999999999877766555 678888884
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.05 E-value=7.7e-10 Score=117.08 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=78.1
Q ss_pred ceEEeeeCccCeEEE---ccc-cccceeEEeeCCeeeceeEEEccc---c------ccc--CccCC-------ccCCCC-
Q 007977 440 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---G------FFL--SAHCN-------MDQQSS- 496 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~---L~~-~R~~~~vavl~g~IYn~iYviGG~---g------~~~--dp~~n-------M~~~R~- 496 (582)
+.+++|||.+++|.. ||. +|.++++++++|+|| ++||. + +.| ||..+ |+.+|.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~ 243 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLL----LINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS 243 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEE----EEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence 579999999999998 775 588899999996665 99996 1 112 55544 877763
Q ss_pred ------ceEEEEEccc-------cCCC-----------------CccccccccceeeccC---CCeeecCCCCceeecce
Q 007977 497 ------FHCFGLFLGM-------QEKG-----------------SVSFAVDYEFAARIKP---TEEYVSKYKGNYTFTGG 543 (582)
Q Consensus 497 ------~~~~~vl~G~-------~~~~-----------------~lssvV~~~~aErYdP---~W~~va~m~~~~~~~g~ 543 (582)
.|++++++|+ +..+ .+.+ | |+||| +|+.+++||.++..+++
T Consensus 244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~~~~~~~ 317 (346)
T TIGR03547 244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWS-S-----EVYALDNGKWSKVGKLPQGLAYGVS 317 (346)
T ss_pred ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeE-e-----eEEEecCCcccccCCCCCCceeeEE
Confidence 3445666665 2111 1124 3 99999 99999999999877655
Q ss_pred eEecccccccccccceecCCceEEEcCeee
Q 007977 544 KAVGYRNLFGIPWTAFMADDSIYFINGNLH 573 (582)
Q Consensus 544 ~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 573 (582)
++++ ++||+|||-..
T Consensus 318 ~~~~---------------~~iyv~GG~~~ 332 (346)
T TIGR03547 318 VSWN---------------NGVLLIGGENS 332 (346)
T ss_pred EEcC---------------CEEEEEeccCC
Confidence 4455 89999999643
No 19
>PLN02153 epithiospecifier protein
Probab=98.87 E-value=1e-08 Score=108.51 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=87.2
Q ss_pred eeEEEeec------CceEEeeeCccCeEEE---c-----cccccceeEEeeCCeeeceeEEEccc---c-----------
Q 007977 431 ERAYKYRP------VKVVEFELPRQQCVVY---L-----DLKREECAHLFPAGRIYSQAFHLGGQ---G----------- 482 (582)
Q Consensus 431 ~~l~v~~~------~~~ve~ydP~~~~W~~---L-----~~~R~~~~vavl~g~IYn~iYviGG~---g----------- 482 (582)
+.+|++|+ .+.+++|||.+++|.. | |.+|..|++++.+++|| |+||+ +
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCccCCCccCCCcccceE
Confidence 46777765 3579999999999997 4 66799999999996655 99997 1
Q ss_pred cccCccCC-------c---cCCCCceEEEEEcccc----CC-------C----CccccccccceeeccC---CCeeecC-
Q 007977 483 FFLSAHCN-------M---DQQSSFHCFGLFLGMQ----EK-------G----SVSFAVDYEFAARIKP---TEEYVSK- 533 (582)
Q Consensus 483 ~~~dp~~n-------M---~~~R~~~~~~vl~G~~----~~-------~----~lssvV~~~~aErYdP---~W~~va~- 533 (582)
..|||.++ | ..+|..|++++++|+. |. + .++. | ++||| +|+.+++
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~-v-----~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNA-V-----QFFDPASGKWTEVETT 235 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCc-e-----EEEEcCCCcEEecccc
Confidence 12477765 3 3789999998887761 10 1 1233 3 99999 9999975
Q ss_pred --CCCceeecceeEecccccccccccceecCCceEEEcCee
Q 007977 534 --YKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNL 572 (582)
Q Consensus 534 --m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~ 572 (582)
+|.++..++.+++| ++||++||..
T Consensus 236 g~~P~~r~~~~~~~~~---------------~~iyv~GG~~ 261 (341)
T PLN02153 236 GAKPSARSVFAHAVVG---------------KYIIIFGGEV 261 (341)
T ss_pred CCCCCCcceeeeEEEC---------------CEEEEECccc
Confidence 67788877777777 7899999964
No 20
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.85 E-value=1.2e-08 Score=107.89 Aligned_cols=116 Identities=14% Similarity=0.009 Sum_probs=79.4
Q ss_pred eeEEEeecC--ceEEeeeC--ccCeEEE---cc-ccccceeEEeeCCeeeceeEEEcccc--------------cccCcc
Q 007977 431 ERAYKYRPV--KVVEFELP--RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQG--------------FFLSAH 488 (582)
Q Consensus 431 ~~l~v~~~~--~~ve~ydP--~~~~W~~---L~-~~R~~~~vavl~g~IYn~iYviGG~g--------------~~~dp~ 488 (582)
..+|+.++. +.+.+||+ .+++|.. || .+|..+++++++|+|| |+||.. ++|||.
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iY----v~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLY----VFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEE----EEeCCCCCCCCCcceecccEEEEECC
Confidence 457776654 56778885 6789998 66 4789999999996555 999972 135887
Q ss_pred CC--------ccCCCCceEEE-EEccc----cCCC-------------------------------------Cccccccc
Q 007977 489 CN--------MDQQSSFHCFG-LFLGM----QEKG-------------------------------------SVSFAVDY 518 (582)
Q Consensus 489 ~n--------M~~~R~~~~~~-vl~G~----~~~~-------------------------------------~lssvV~~ 518 (582)
.| |+.+|..++++ +++|+ .|.. .+++ |
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-- 170 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN-V-- 170 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce-E--
Confidence 76 33444555555 45665 1111 0134 3
Q ss_pred cceeeccC---CCeeecCCCC-ceeecceeEecccccccccccceecCCceEEEcCe
Q 007977 519 EFAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 519 ~~aErYdP---~W~~va~m~~-~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
|+||| +|+.+++||. ++..++.++++ ++||++||.
T Consensus 171 ---~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~---------------~~iyv~GG~ 209 (346)
T TIGR03547 171 ---LSYDPSTNQWRNLGENPFLGTAGSAIVHKG---------------NKLLLINGE 209 (346)
T ss_pred ---EEEECCCCceeECccCCCCcCCCceEEEEC---------------CEEEEEeee
Confidence 99999 8999999996 56666655555 678888875
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.81 E-value=1.5e-08 Score=108.90 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=75.6
Q ss_pred ceEEeeeCccCeEEE---ccc-cccceeEEeeCCeeeceeEEEccc---c--------cccCccCC-------ccCCCCc
Q 007977 440 KVVEFELPRQQCVVY---LDL-KREECAHLFPAGRIYSQAFHLGGQ---G--------FFLSAHCN-------MDQQSSF 497 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~---L~~-~R~~~~vavl~g~IYn~iYviGG~---g--------~~~dp~~n-------M~~~R~~ 497 (582)
+.+++|||.+++|.. ||. +|.++++++.+++|| ++||. + +.+||..+ |+++|..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iY----v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLW----LINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEE----EEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 468999999999998 675 677889999996555 99995 2 12366544 8877642
Q ss_pred --------eEEEEEccc-------cCCC--------C------c---cccccccceeeccC---CCeeecCCCCceeecc
Q 007977 498 --------HCFGLFLGM-------QEKG--------S------V---SFAVDYEFAARIKP---TEEYVSKYKGNYTFTG 542 (582)
Q Consensus 498 --------~~~~vl~G~-------~~~~--------~------l---ssvV~~~~aErYdP---~W~~va~m~~~~~~~g 542 (582)
+.+++++|+ +..+ . + .+ | |+||| +|+.+++||.++..++
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----e~yd~~~~~W~~~~~lp~~r~~~~ 338 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS-D-----EIYALVNGKWQKVGELPQGLAYGV 338 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee-h-----heEEecCCcccccCcCCCCccceE
Confidence 223455555 2111 0 1 13 3 99999 9999999999998776
Q ss_pred eeEecccccccccccceecCCceEEEcCe
Q 007977 543 GKAVGYRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 543 ~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
.++++ ++||+|||.
T Consensus 339 av~~~---------------~~iyv~GG~ 352 (376)
T PRK14131 339 SVSWN---------------NGVLLIGGE 352 (376)
T ss_pred EEEeC---------------CEEEEEcCC
Confidence 55555 789999995
No 22
>PLN02193 nitrile-specifier protein
Probab=98.78 E-value=3.7e-08 Score=109.08 Aligned_cols=117 Identities=12% Similarity=0.035 Sum_probs=87.8
Q ss_pred eeEEEeec------CceEEeeeCccCeEEE---c---cccccceeEEeeCCeeeceeEEEcccc--------cccCccCC
Q 007977 431 ERAYKYRP------VKVVEFELPRQQCVVY---L---DLKREECAHLFPAGRIYSQAFHLGGQG--------FFLSAHCN 490 (582)
Q Consensus 431 ~~l~v~~~------~~~ve~ydP~~~~W~~---L---~~~R~~~~vavl~g~IYn~iYviGG~g--------~~~dp~~n 490 (582)
+.+|++++ .+.+++|||.+++|.. + |.+|..|++++.+++|| ++||.. ..|||.++
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCCCCCCCcceEEEEECCCC
Confidence 45777655 4689999999999997 4 67899999999996555 999972 23566654
Q ss_pred ----------ccCCCCceEEEEEcccc----C-C-CCccccccccceeeccC---CCeeecCC---CCceeecceeEecc
Q 007977 491 ----------MDQQSSFHCFGLFLGMQ----E-K-GSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGY 548 (582)
Q Consensus 491 ----------M~~~R~~~~~~vl~G~~----~-~-~~lssvV~~~~aErYdP---~W~~va~m---~~~~~~~g~~avg~ 548 (582)
|+.+|..|++++++|+. + . ..++.+ ++||| +|+.++++ |.++..+++++++
T Consensus 305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv------~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~- 377 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDV------HYYDPVQDKWTQVETFGVRPSERSVFASAAVG- 377 (470)
T ss_pred EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCce------EEEECCCCEEEEeccCCCCCCCcceeEEEEEC-
Confidence 56789999998887761 1 1 123443 99999 89999876 7778877777666
Q ss_pred cccccccccceecCCceEEEcCee
Q 007977 549 RNLFGIPWTAFMADDSIYFINGNL 572 (582)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~i~~~~ 572 (582)
++||++||..
T Consensus 378 --------------~~iyv~GG~~ 387 (470)
T PLN02193 378 --------------KHIVIFGGEI 387 (470)
T ss_pred --------------CEEEEECCcc
Confidence 6789999964
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.77 E-value=4.4e-08 Score=102.90 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=82.1
Q ss_pred eeEEEeec------CceEEeeeCccCeE----EE---ccccccceeEEeeCCeeeceeEEEccc--------ccccCccC
Q 007977 431 ERAYKYRP------VKVVEFELPRQQCV----VY---LDLKREECAHLFPAGRIYSQAFHLGGQ--------GFFLSAHC 489 (582)
Q Consensus 431 ~~l~v~~~------~~~ve~ydP~~~~W----~~---L~~~R~~~~vavl~g~IYn~iYviGG~--------g~~~dp~~ 489 (582)
+.+|++|+ .+.+++||+.+++| .. ||.+|..+++++++++|| ++||. -+.|||.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCcCCCccCceEEEEcCCC
Confidence 45677655 36899999999998 33 788899999999996665 99996 13458887
Q ss_pred C-------cc-CCCCceEEEEEccc----cCCC--CccccccccceeeccC---CCeeecCCC---Cceeecce--eEec
Q 007977 490 N-------MD-QQSSFHCFGLFLGM----QEKG--SVSFAVDYEFAARIKP---TEEYVSKYK---GNYTFTGG--KAVG 547 (582)
Q Consensus 490 n-------M~-~~R~~~~~~vl~G~----~~~~--~lssvV~~~~aErYdP---~W~~va~m~---~~~~~~g~--~avg 547 (582)
+ |+ .+|..+++++++|+ .|.. ....+ ++||| +|+.+++|+ .++...+. +++.
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~------~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDG------YKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccce------EEEecCCCeeEECCCCCCCCCceeccceeEEEEC
Confidence 6 66 47888888877776 1211 12232 89999 899999884 34443332 2333
Q ss_pred ccccccccccceecCCceEEEcCe
Q 007977 548 YRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
+++||++||.
T Consensus 223 --------------~~~iyv~GG~ 232 (323)
T TIGR03548 223 --------------ESLLLCIGGF 232 (323)
T ss_pred --------------CCEEEEECCc
Confidence 4688888886
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.76 E-value=3.8e-08 Score=103.34 Aligned_cols=119 Identities=13% Similarity=-0.002 Sum_probs=81.6
Q ss_pred eeEEEeec------CceEEeeeCccCeEEE---cc-ccccceeEEeeCCeeeceeEEEcccc-------cccCccCC---
Q 007977 431 ERAYKYRP------VKVVEFELPRQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQG-------FFLSAHCN--- 490 (582)
Q Consensus 431 ~~l~v~~~------~~~ve~ydP~~~~W~~---L~-~~R~~~~vavl~g~IYn~iYviGG~g-------~~~dp~~n--- 490 (582)
+.+|+.++ .+.+++|||.+++|.. |+ .+|..+++++++++|| ++||.. +.|||.++
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iY----v~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELY----VFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEE----EEcCCCCccccceEEEecCCCeeE
Confidence 46777654 4689999999999998 55 3688888889996655 999971 35688876
Q ss_pred ----cc---CCCC--ceEEEE--------EccccCCC-------------------------------Ccccccccccee
Q 007977 491 ----MD---QQSS--FHCFGL--------FLGMQEKG-------------------------------SVSFAVDYEFAA 522 (582)
Q Consensus 491 ----M~---~~R~--~~~~~v--------l~G~~~~~-------------------------------~lssvV~~~~aE 522 (582)
|. .+|. .++.++ +||.++.. ..++.| |
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~ 274 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI-----L 274 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE-----E
Confidence 42 3433 233222 33332211 011223 9
Q ss_pred eccC---CCeeecCCC-CceeecceeEecccccccccccceecCCceEEEcCeee
Q 007977 523 RIKP---TEEYVSKYK-GNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLH 573 (582)
Q Consensus 523 rYdP---~W~~va~m~-~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 573 (582)
+||| +|+.+++|| .++..++.++++ ++||++||..+
T Consensus 275 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~---------------~~iyv~GG~~~ 314 (323)
T TIGR03548 275 IYNVRTGKWKSIGNSPFFARCGAALLLTG---------------NNIFSINGELK 314 (323)
T ss_pred EEECCCCeeeEcccccccccCchheEEEC---------------CEEEEEecccc
Confidence 9999 899999997 477777776666 78999999765
No 25
>PLN02153 epithiospecifier protein
Probab=98.75 E-value=5.9e-08 Score=102.78 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=73.9
Q ss_pred eeEEEeecC--------ceEEeeeCccCeEEEcc----cccc---ceeEEeeCCeeeceeEEEccc---c-----cccCc
Q 007977 431 ERAYKYRPV--------KVVEFELPRQQCVVYLD----LKRE---ECAHLFPAGRIYSQAFHLGGQ---G-----FFLSA 487 (582)
Q Consensus 431 ~~l~v~~~~--------~~ve~ydP~~~~W~~L~----~~R~---~~~vavl~g~IYn~iYviGG~---g-----~~~dp 487 (582)
+.||++|+. +.+.+||+.+++|..++ .+|. ++++++++++|| ++||. + +.|||
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iy----v~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLY----IFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEE----EECCCCCCCccCcEEEEEC
Confidence 457776543 46889999999999832 3343 688889996555 99997 1 24587
Q ss_pred cCC-------c-----cCCCCceEEEEEccc-------cCCC------CccccccccceeeccC---CCeeecCCC---C
Q 007977 488 HCN-------M-----DQQSSFHCFGLFLGM-------QEKG------SVSFAVDYEFAARIKP---TEEYVSKYK---G 536 (582)
Q Consensus 488 ~~n-------M-----~~~R~~~~~~vl~G~-------~~~~------~lssvV~~~~aErYdP---~W~~va~m~---~ 536 (582)
.++ | +.+|..|++++++++ +..+ .+.. | ++||| +|+.++++. .
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCC
Confidence 765 5 678999998876665 2221 1234 3 99999 899999875 5
Q ss_pred ceeecceeEec
Q 007977 537 NYTFTGGKAVG 547 (582)
Q Consensus 537 ~~~~~g~~avg 547 (582)
++..++.++++
T Consensus 183 ~r~~~~~~~~~ 193 (341)
T PLN02153 183 KRGGAGFAVVQ 193 (341)
T ss_pred CCCcceEEEEC
Confidence 56666555544
No 26
>PLN02193 nitrile-specifier protein
Probab=98.60 E-value=2.6e-07 Score=102.36 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=74.7
Q ss_pred eeEEEeecC--------ceEEeeeCccCeEEEcc----cc---ccceeEEeeCCeeeceeEEEcccc--------cccCc
Q 007977 431 ERAYKYRPV--------KVVEFELPRQQCVVYLD----LK---REECAHLFPAGRIYSQAFHLGGQG--------FFLSA 487 (582)
Q Consensus 431 ~~l~v~~~~--------~~ve~ydP~~~~W~~L~----~~---R~~~~vavl~g~IYn~iYviGG~g--------~~~dp 487 (582)
..+|++++. +.+++||+.+++|..++ .+ |..+++++++++|| ++||+. ++|||
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lY----vfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLY----VFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEE----EECCCCCCCCCccEEEEEC
Confidence 457776552 35889999999999732 22 45788889996555 999971 24588
Q ss_pred cCC-------c---cCCCCceEEEEEccc-------cCCCCccccccccceeeccC---CCeeecC---CCCceeeccee
Q 007977 488 HCN-------M---DQQSSFHCFGLFLGM-------QEKGSVSFAVDYEFAARIKP---TEEYVSK---YKGNYTFTGGK 544 (582)
Q Consensus 488 ~~n-------M---~~~R~~~~~~vl~G~-------~~~~~lssvV~~~~aErYdP---~W~~va~---m~~~~~~~g~~ 544 (582)
.++ | +.+|..|++++++++ ++...+..+ ++||| +|+.+++ ++.++..++.+
T Consensus 252 ~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~------~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 252 TTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTL------DSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceE------EEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 776 4 789999999876665 333445554 99999 8999875 55666655554
Q ss_pred Eec
Q 007977 545 AVG 547 (582)
Q Consensus 545 avg 547 (582)
+++
T Consensus 326 ~~~ 328 (470)
T PLN02193 326 VVQ 328 (470)
T ss_pred EEC
Confidence 444
No 27
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.52 E-value=5.6e-07 Score=96.79 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=77.2
Q ss_pred eeEEEeecC--ceEEeeeCc--cCeEEE---cc-ccccceeEEeeCCeeeceeEEEccccc--------------ccCcc
Q 007977 431 ERAYKYRPV--KVVEFELPR--QQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGF--------------FLSAH 488 (582)
Q Consensus 431 ~~l~v~~~~--~~ve~ydP~--~~~W~~---L~-~~R~~~~vavl~g~IYn~iYviGG~g~--------------~~dp~ 488 (582)
+.+|+.++. +.+..||+. +++|.. || .+|.++++++++++| |++||+.. .|||.
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~I----YV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKL----YVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEE----EEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 467775543 456778875 578987 55 468899999999555 59999621 35887
Q ss_pred CC--------ccCCCCceEEEE-Eccc----cCCCC-------------------------------------ccccccc
Q 007977 489 CN--------MDQQSSFHCFGL-FLGM----QEKGS-------------------------------------VSFAVDY 518 (582)
Q Consensus 489 ~n--------M~~~R~~~~~~v-l~G~----~~~~~-------------------------------------lssvV~~ 518 (582)
.| ++.+|..|++++ .+|+ .|... .+. |
T Consensus 115 ~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-v-- 191 (376)
T PRK14131 115 TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKE-V-- 191 (376)
T ss_pred CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCce-E--
Confidence 76 234445566555 5555 11110 123 3
Q ss_pred cceeeccC---CCeeecCCCC-ceeecceeEecccccccccccceecCCceEEEcCe
Q 007977 519 EFAARIKP---TEEYVSKYKG-NYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGN 571 (582)
Q Consensus 519 ~~aErYdP---~W~~va~m~~-~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~ 571 (582)
++||| +|+.+++||. ++..++.++++ ++||+|||.
T Consensus 192 ---~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~---------------~~iYv~GG~ 230 (376)
T PRK14131 192 ---LSYDPSTNQWKNAGESPFLGTAGSAVVIKG---------------NKLWLINGE 230 (376)
T ss_pred ---EEEECCCCeeeECCcCCCCCCCcceEEEEC---------------CEEEEEeee
Confidence 99999 8999999996 56655555545 678888884
No 28
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.96 E-value=1e-05 Score=91.29 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCceeEEEEEE--EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEe---
Q 007977 140 WSMDLSTVLRVK--TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLR--- 214 (582)
Q Consensus 140 ~~~~~DV~l~v~--~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~--- 214 (582)
.....||||.|+ .|+|||.||+++|++|++ +|....+.+....|++.
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrk----------------------------L~l~~~~~s~~~dIY~~~~~ 606 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRK----------------------------LLLQKKKSSVSNDIYIEEIT 606 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHH----------------------------HHHhhccccccceeeeeccc
Confidence 345789999996 599999999999999999 55443333222233332
Q ss_pred -------cCCCCHHHHHHHHhcccCCccccC----c---------cchH-------HHHHHhhchhhhhhhhhhh
Q 007977 215 -------IHASEEAALMELLNFMYSSTLSTT----T---------PTAL-------LDVLMAADKFEVASCMRYC 262 (582)
Q Consensus 215 -------~~~v~~~~f~~lL~fiYTg~l~i~----~---------~~~v-------~~ll~aAd~l~v~~L~~~C 262 (582)
.+++.|..|+.+|+||||+.+--. . ++|. ..++..+.+|++..|...-
T Consensus 607 ~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 607 QSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred ccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 559999999999999999954210 0 1333 3377788888887776443
No 29
>PF13964 Kelch_6: Kelch motif
Probab=97.65 E-value=6.6e-05 Score=56.96 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=35.6
Q ss_pred cccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceeeccC---CCeeecCC
Q 007977 458 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 534 (582)
Q Consensus 458 ~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aErYdP---~W~~va~m 534 (582)
+|.++++++++|+|| ++||.... ....+.+ |+||| +|+.+++|
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~~~------------------------~~~~~~v------~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYDNS------------------------GKYSNDV------ERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEE----EECCCCCC------------------------CCccccE------EEEcCCCCcEEECCCC
Confidence 588999999996665 99997210 1223454 99999 99999999
Q ss_pred CCce
Q 007977 535 KGNY 538 (582)
Q Consensus 535 ~~~~ 538 (582)
|.+|
T Consensus 47 p~pR 50 (50)
T PF13964_consen 47 PTPR 50 (50)
T ss_pred CCCC
Confidence 9875
No 30
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=0.0001 Score=76.59 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=102.8
Q ss_pred EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCHHHHHHHHhcc
Q 007977 151 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 230 (582)
Q Consensus 151 ~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~f~~lL~fi 230 (582)
+.+.+|+++++++|++|++ |+.....+.....+++. +.++..++++..|+
T Consensus 110 g~~~~~~~~~~a~~~V~~~----------------------------~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~ 159 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEA----------------------------MGKSDVFKESSKLITLL--EEKPEVLEALNGFQ 159 (297)
T ss_pred cEEEcCceEEEeeecceee----------------------------ecccccchhcccccccc--ccchhhHhhhceEE
Confidence 5699999999999999999 88887666566666666 89999999999999
Q ss_pred cCCccccCccchHH---HHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhHHHHHHHHHHH--
Q 007977 231 YSSTLSTTTPTALL---DVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAA-- 305 (582)
Q Consensus 231 YTg~l~i~~~~~v~---~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~-- 305 (582)
|+..-.... +... .++.+|++++...|+..|...+.. .++..+++.++..++.+ ....+..++..++..
T Consensus 160 ~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~ 233 (297)
T KOG1987|consen 160 VLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGF 233 (297)
T ss_pred EeccchHHH-HHhhcCChhhhhccccccHHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccc
Confidence 996555443 3443 788899999999999999999999 58888888888888776 456778888888876
Q ss_pred hhhhhhh
Q 007977 306 RYKDISK 312 (582)
Q Consensus 306 ~f~~v~~ 312 (582)
+++.+.+
T Consensus 234 ~ld~l~~ 240 (297)
T KOG1987|consen 234 KLDWLEK 240 (297)
T ss_pred hHhHHHH
Confidence 6666654
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.40 E-value=0.0011 Score=67.02 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.2
Q ss_pred eeEEEeecC-------ceEEeeeCccCeEEE------ccccccceeEEeeCCeeeceeEEEccc
Q 007977 431 ERAYKYRPV-------KVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 481 (582)
Q Consensus 431 ~~l~v~~~~-------~~ve~ydP~~~~W~~------L~~~R~~~~vavl~g~IYn~iYviGG~ 481 (582)
+.+|+.|+- +...+|||.+++|.. +|..|.+|++||++ |+.|+.||+
T Consensus 89 d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g----n~MyiFGGy 148 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG----NQMYIFGGY 148 (392)
T ss_pred ceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC----cEEEEecCh
Confidence 456665443 467789999999976 78889999999999 666688886
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.37 E-value=0.00011 Score=54.61 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=33.0
Q ss_pred cccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceeeccC---CCeeecCC
Q 007977 458 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 534 (582)
Q Consensus 458 ~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aErYdP---~W~~va~m 534 (582)
+|.+|++++++++|| ++||... ....++++ |+||| +|+.+++|
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~~------------------------~~~~~~~v------~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYDG------------------------NNQPTNSV------EVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBES------------------------TSSBEEEE------EEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEE----EEeeecc------------------------cCceeeeE------EEEeCCCCEEEEcCCC
Confidence 588999999995555 9999621 12234564 99999 99999999
Q ss_pred C
Q 007977 535 K 535 (582)
Q Consensus 535 ~ 535 (582)
|
T Consensus 47 p 47 (47)
T PF01344_consen 47 P 47 (47)
T ss_dssp S
T ss_pred C
Confidence 6
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.35 E-value=0.001 Score=74.23 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=73.4
Q ss_pred eEEEeecCc-------eEEeeeCccCeEEE------ccccccceeEEeeCCeeeceeEEEccccc---------ccCccC
Q 007977 432 RAYKYRPVK-------VVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGF---------FLSAHC 489 (582)
Q Consensus 432 ~l~v~~~~~-------~ve~ydP~~~~W~~------L~~~R~~~~vavl~g~IYn~iYviGG~g~---------~~dp~~ 489 (582)
.+|++|+.. .+..||+.+++|.. .|.+|.+|++++.+ +++||.||.+. .||+.+
T Consensus 124 ~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g----~~l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 124 KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG----TKLVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC----CEEEEECCccCcccceeeeeeecccc
Confidence 567766543 78999999999998 57889999999999 55569999821 235555
Q ss_pred C----------ccCCCCceEEEEEccc-------c-CCCCccccccccceeeccC---CCeeec---CCCCceeecceeE
Q 007977 490 N----------MDQQSSFHCFGLFLGM-------Q-EKGSVSFAVDYEFAARIKP---TEEYVS---KYKGNYTFTGGKA 545 (582)
Q Consensus 490 n----------M~~~R~~~~~~vl~G~-------~-~~~~lssvV~~~~aErYdP---~W~~va---~m~~~~~~~g~~a 545 (582)
+ -+.||..|++++.+++ + +...++.+ =.+|- +|.... .+|.++..+..++
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~------~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~ 273 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV------HILDLSTWEWKLLPTGGDLPSPRSGHSLTV 273 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce------EeeecccceeeeccccCCCCCCcceeeeEE
Confidence 3 6779999999987666 2 22223343 45555 677544 3466777776554
Q ss_pred ec
Q 007977 546 VG 547 (582)
Q Consensus 546 vg 547 (582)
.|
T Consensus 274 ~~ 275 (482)
T KOG0379|consen 274 SG 275 (482)
T ss_pred EC
Confidence 44
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.27 E-value=0.00014 Score=73.44 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=65.0
Q ss_pred HHhHHHHHHHhcCCCCCCCCceeEEEEEEEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccC
Q 007977 123 GLNLKQCEEATGNIDPAWSMDLSTVLRVKTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG 202 (582)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~~~~DV~l~v~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~ 202 (582)
+..++.+.+..+ .....+.|++|.--.|+|||++||+|+|+|+. +.+..
T Consensus 115 ~sf~kD~ad~ye---~k~c~dldiiFkeTcfpahRA~laaRCpffK~----------------------------l~nsd 163 (401)
T KOG2838|consen 115 NSFLKDFADGYE---RKVCGDLDIIFKETCFPAHRAFLAARCPFFKI----------------------------LANSD 163 (401)
T ss_pred hHHHHHHhhhhh---eeeeccceeeeeeccchHHHHHHHhhCcchhh----------------------------hccCC
Confidence 445555555522 44667889988888899999999999999998 55543
Q ss_pred cccCCccE--EEEecCCCCHHHHHHHHhcccCCccccCc--cchHHHHHHhhchhh
Q 007977 203 MRESEQRY--VTLRIHASEEAALMELLNFMYSSTLSTTT--PTALLDVLMAADKFE 254 (582)
Q Consensus 203 ~~Es~~~~--v~l~~~~v~~~~f~~lL~fiYTg~l~i~~--~~~v~~ll~aAd~l~ 254 (582)
- ..... ..+.-.+++.++|.++|+++|||+.-... ..|+.-|-+++.-||
T Consensus 164 ~--e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG 217 (401)
T KOG2838|consen 164 E--EPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFG 217 (401)
T ss_pred C--CcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhC
Confidence 2 22222 12222378999999999999999876432 033333344444444
No 35
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.27 E-value=6.4e-05 Score=78.79 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=99.6
Q ss_pred EEEEEE-EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCC-ccE-EEEecCCCCHHH
Q 007977 146 TVLRVK-TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE-QRY-VTLRIHASEEAA 222 (582)
Q Consensus 146 V~l~v~-~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~-~~~-v~l~~~~v~~~~ 222 (582)
|.+-++ +.|||++++. |..||+. ||.|++.|+. +.. ..+..++....+
T Consensus 295 iql~~~~RyP~hla~i~-R~eyfk~----------------------------mf~g~f~e~s~n~~~p~lslp~~~~~v 345 (516)
T KOG0511|consen 295 IQLPEEDRYPAHLARIL-RVEYFKS----------------------------MFVGDFIESSVNDTRPGLSLPSLADVV 345 (516)
T ss_pred ccccccccccHHHHHHH-HHHHHHH----------------------------HhccchhhhcCCccccccccchHHHHH
Confidence 334443 6999999994 5579999 9999999965 332 222223677889
Q ss_pred HHHHHhcccCCccccCccchHHHHHHhhchhhhh--h-hhhhhhhhcccC--cCCccchhhhccccchhhhhhhhhhHHH
Q 007977 223 LMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA--S-CMRYCSRLLRNL--PMTCESALLYLDLPSSVLMADAVQPLTD 297 (582)
Q Consensus 223 f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~--~-L~~~C~~~L~~l--~l~~~n~~~~l~la~~~~~~~~~~~L~~ 297 (582)
.+..++|+|+++..+.. +-+.+++..|+++.+. + |+.+....+++- -++.-++..++..+-.. ....|.+
T Consensus 346 veI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEq 420 (516)
T KOG0511|consen 346 VEIDLRNLYCDQTDIIF-DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQ 420 (516)
T ss_pred HHHHHHHhhcccccchH-HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHH
Confidence 99999999999999988 8899999999999776 2 343333333320 13444566666654333 4678889
Q ss_pred HHHHHHHHhhhhhhhhhHhhcCC
Q 007977 298 TAKQFLAARYKDISKFQEEVLNL 320 (582)
Q Consensus 298 ~~~~fi~~~f~~v~~~~~~f~~L 320 (582)
.+..|++.|+..+.. .+++...
T Consensus 421 fa~~~~a~hl~~l~~-dPe~~~~ 442 (516)
T KOG0511|consen 421 FAETHEARHLLLLLP-DPEGDSS 442 (516)
T ss_pred HHHHHHHHHHHHhcC-CchhhHH
Confidence 999999999888887 6666543
No 36
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.16 E-value=0.0023 Score=71.38 Aligned_cols=96 Identities=11% Similarity=-0.085 Sum_probs=72.5
Q ss_pred EEeeeCccCeEEE------ccccccceeEEeeCCeeeceeEEEccccc---------ccCccCC----------ccCCCC
Q 007977 442 VEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQGF---------FLSAHCN----------MDQQSS 496 (582)
Q Consensus 442 ve~ydP~~~~W~~------L~~~R~~~~vavl~g~IYn~iYviGG~g~---------~~dp~~n----------M~~~R~ 496 (582)
+..+|-.++.|.. .|.+|.+++.++.+ +++|++||+.. .+|+.++ ++.+|.
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~----~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG----DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEEC----CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 7788888899976 57789999999999 55559999831 2344443 899999
Q ss_pred ceEEEEEcc-------ccCCC-CccccccccceeeccC---CCeee---cCCCCceeecceeEec
Q 007977 497 FHCFGLFLG-------MQEKG-SVSFAVDYEFAARIKP---TEEYV---SKYKGNYTFTGGKAVG 547 (582)
Q Consensus 497 ~~~~~vl~G-------~~~~~-~lssvV~~~~aErYdP---~W~~v---a~m~~~~~~~g~~avg 547 (582)
+|.+++.+. .+..+ .+..+ -.||+ +|..+ .+-|.+|.+|+.++++
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl------~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~ 224 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDL------HIYDLETSTWSELDTQGEAPSPRYGHAMVVVG 224 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeee------eeeccccccceecccCCCCCCCCCCceEEEEC
Confidence 999987654 44444 45554 78999 89987 3667789999988888
No 37
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.66 E-value=0.00034 Score=70.69 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=70.5
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCc-c---cCCccEEEEecCCCCHHHHHH-H
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGM-R---ESEQRYVTLRIHASEEAALME-L 226 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~-~---Es~~~~v~l~~~~v~~~~f~~-l 226 (582)
++.||++|.|+||++||. ||+|= +=.+.- . -+....|.+. +-+-|.+|.. +
T Consensus 262 eikahkai~aaRS~ffRn--------------LL~Rk---------iregeE~sdrtlr~PkRIifd-E~I~PkafA~i~ 317 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRN--------------LLLRK---------IREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIF 317 (401)
T ss_pred HHHHHHHHHHhhhHHHHH--------------HHHHH---------hhcccccccccccCCceeech-hhhcchhhhhhh
Confidence 489999999999999999 22221 111110 0 0112345554 3566666664 7
Q ss_pred HhcccCCccccCc---------------------------cchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhh
Q 007977 227 LNFMYSSTLSTTT---------------------------PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLY 279 (582)
Q Consensus 227 L~fiYTg~l~i~~---------------------------~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~ 279 (582)
+++|||+.+.++. .+.+++|+..|-+|+++.|.+.|+..+.. ....++...+
T Consensus 318 lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~c 396 (401)
T KOG2838|consen 318 LHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGC 396 (401)
T ss_pred hhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccccc
Confidence 8999999886421 13467899999999999999999999987 5666666554
Q ss_pred c
Q 007977 280 L 280 (582)
Q Consensus 280 l 280 (582)
+
T Consensus 397 L 397 (401)
T KOG2838|consen 397 L 397 (401)
T ss_pred c
Confidence 4
No 38
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.56 E-value=0.0075 Score=61.26 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=66.5
Q ss_pred eEEeeeCccCeEEEcc----------------ccccceeEEeeCCeeeceeEEEccc----cc-----ccCccCC-----
Q 007977 441 VVEFELPRQQCVVYLD----------------LKREECAHLFPAGRIYSQAFHLGGQ----GF-----FLSAHCN----- 490 (582)
Q Consensus 441 ~ve~ydP~~~~W~~L~----------------~~R~~~~vavl~g~IYn~iYviGG~----g~-----~~dp~~n----- 490 (582)
.|+.++..+-+|+.|| ..|.+|.++..++++| +.||. |. .+||.++
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y----vWGGRND~egaCN~Ly~fDp~t~~W~~p 120 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY----VWGGRNDDEGACNLLYEFDPETNVWKKP 120 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE----EEcCccCcccccceeeeecccccccccc
Confidence 5667777888898754 3488999999996665 99998 32 3489887
Q ss_pred -----ccCCCCceEEEEEccc--------cCCCCccccccccceeeccC---CCeeecCC---CCceeecceeEec
Q 007977 491 -----MDQQSSFHCFGLFLGM--------QEKGSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVG 547 (582)
Q Consensus 491 -----M~~~R~~~~~~vl~G~--------~~~~~lssvV~~~~aErYdP---~W~~va~m---~~~~~~~g~~avg 547 (582)
.+-.|-+|.+||+++. .+....++-+ -.+|- +|+.+..- |.-+-||.+.+.+
T Consensus 121 ~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~-----h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~ 191 (392)
T KOG4693|consen 121 EVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT-----HVLDFATMTWREMHTKGDPPRWRDFHTASVID 191 (392)
T ss_pred ceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc-----eeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence 7889999999998765 2223344322 33444 89988543 3346666655544
No 39
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.53 E-value=0.0055 Score=52.64 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=62.2
Q ss_pred EEEEE--EEEEeeeeecc-ccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccC---cccCCccEEEEecCCCC
Q 007977 146 TVLRV--KTVHISSPILA-AKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNG---MRESEQRYVTLRIHASE 219 (582)
Q Consensus 146 V~l~v--~~f~aHr~ILa-a~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~---~~Es~~~~v~l~~~~v~ 219 (582)
|.|.| ..|.+-+..|. ....+|.+ ||.+. .....+..+-| +-+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~----------------------------~~~~~~~~~~~~~~~~~fi---DRd 49 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLAR----------------------------LFSGERSDDYDDDDGEYFI---DRD 49 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTS----------------------------HHHTGHGGGEETTTTEEEE---SS-
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhh----------------------------HHhhccccccCCccceEEe---ccC
Confidence 45666 36888888887 44568888 88754 33345567776 689
Q ss_pred HHHHHHHHhcccC-CccccCccchHHHHHHhhchhhhhhh-hhhh
Q 007977 220 EAALMELLNFMYS-STLSTTTPTALLDVLMAADKFEVASC-MRYC 262 (582)
Q Consensus 220 ~~~f~~lL~fiYT-g~l~i~~~~~v~~ll~aAd~l~v~~L-~~~C 262 (582)
|..|+.+|+|+.+ +.+.......+..++.-|.+|+++.| ++.|
T Consensus 50 p~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 50 PELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred hhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 9999999999999 77776533688999999999999999 7777
No 40
>smart00612 Kelch Kelch domain.
Probab=96.37 E-value=0.0034 Score=45.80 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=23.4
Q ss_pred eeccC---CCeeecCCCCceeecceeEec
Q 007977 522 ARIKP---TEEYVSKYKGNYTFTGGKAVG 547 (582)
Q Consensus 522 ErYdP---~W~~va~m~~~~~~~g~~avg 547 (582)
|+||| +|+.+++|+.++..+++++++
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred EEECCCCCeEccCCCCCCccccceEEEeC
Confidence 99999 899999999999988877665
No 41
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.36 E-value=0.014 Score=63.87 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=47.7
Q ss_pred eeEEEeec-----CceEEeeeCccCeEEE------ccccccceeEEeeCCeeeceeEEEccc---ccc------------
Q 007977 431 ERAYKYRP-----VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ---GFF------------ 484 (582)
Q Consensus 431 ~~l~v~~~-----~~~ve~ydP~~~~W~~------L~~~R~~~~vavl~g~IYn~iYviGG~---g~~------------ 484 (582)
+.++++|+ +...+.|+..+++|.. +|..-..|+.+..+ ++||++||. |.+
T Consensus 43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdG----trilvFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDG----TRILVFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecC----ceEEEEccEeeeccccchHHHhhhhhh
Confidence 45666654 3567889999999986 55555567766666 566699996 321
Q ss_pred ----cCccC--C--ccCCCCceEEEEEccc
Q 007977 485 ----LSAHC--N--MDQQSSFHCFGLFLGM 506 (582)
Q Consensus 485 ----~dp~~--n--M~~~R~~~~~~vl~G~ 506 (582)
++|+. | .+.||-+|++.+++.+
T Consensus 119 eWkrlkp~~p~nG~pPCPRlGHSFsl~gnK 148 (830)
T KOG4152|consen 119 EWKRLKPKTPKNGPPPCPRLGHSFSLVGNK 148 (830)
T ss_pred hHhhcCCCCCCCCCCCCCccCceeEEeccE
Confidence 14433 2 7788888888765544
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.10 E-value=0.0084 Score=45.24 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=32.2
Q ss_pred cccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceeeccC---CCeeecCC
Q 007977 458 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 534 (582)
Q Consensus 458 ~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aErYdP---~W~~va~m 534 (582)
+|..|++++++++|| ++||++. .+.....+. | +.||+ +|+.+++|
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~~~----------------------~~~~~~~~~-v-----~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGYGT----------------------DNGGSSSND-V-----WVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEE----EECCccc----------------------CCCCcccce-e-----EEEECCCCEEeecCCC
Confidence 578899999996665 9999610 011112334 3 89999 99999998
Q ss_pred C
Q 007977 535 K 535 (582)
Q Consensus 535 ~ 535 (582)
+
T Consensus 49 g 49 (49)
T PF07646_consen 49 G 49 (49)
T ss_pred C
Confidence 5
No 43
>smart00612 Kelch Kelch domain.
Probab=96.08 E-value=0.009 Score=43.52 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=26.6
Q ss_pred CceEEeeeCccCeEEE---ccccccceeEEeeCC
Q 007977 439 VKVVEFELPRQQCVVY---LDLKREECAHLFPAG 469 (582)
Q Consensus 439 ~~~ve~ydP~~~~W~~---L~~~R~~~~vavl~g 469 (582)
.+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4578999999999987 888899999888763
No 44
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=95.75 E-value=0.0027 Score=66.31 Aligned_cols=84 Identities=12% Similarity=0.277 Sum_probs=54.5
Q ss_pred EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhcc---CcccCCccEEEEecCCCCHHHHHHHH
Q 007977 151 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSN---GMRESEQRYVTLRIHASEEAALMELL 227 (582)
Q Consensus 151 ~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~---~~~Es~~~~v~l~~~~v~~~~f~~lL 227 (582)
++|.|.+-+|-..=.||+. .+.. +-++.+ .|.|.. .-+-.+|+.|+
T Consensus 14 rdF~C~~~lL~~~M~YF~~----------------------------~l~~~~~~~~~~~--~idisV-hCDv~iF~WLm 62 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAE----------------------------YLSRYINDSQRWE--EIDISV-HCDVHIFEWLM 62 (317)
T ss_pred eeeeccHHHHHHhhHHHHH----------------------------HHhhcccccCcCC--CcceEE-ecChhHHHHHH
Confidence 3799999999998899999 5543 222323 344432 47889999999
Q ss_pred hcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhc
Q 007977 228 NFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLL 266 (582)
Q Consensus 228 ~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L 266 (582)
+|+......++. .|+..||.-|++|+|++|.+.|-.|+
T Consensus 63 ~yv~~~~p~l~~-~NvvsIliSS~FL~M~~Lve~cl~y~ 100 (317)
T PF11822_consen 63 RYVKGEPPSLTP-SNVVSILISSEFLQMESLVEECLQYC 100 (317)
T ss_pred HHhhcCCCcCCc-CcEEEeEehhhhhccHHHHHHHHHHH
Confidence 999985555555 55555555555555554444444444
No 45
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.018 Score=57.93 Aligned_cols=85 Identities=15% Similarity=0.302 Sum_probs=71.7
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcc--cCCccEEEEecCCCCHHHHHHHHhc
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMR--ESEQRYVTLRIHASEEAALMELLNF 229 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~--Es~~~~v~l~~~~v~~~~f~~lL~f 229 (582)
.|..++.-|.-...+|++ ||..++. -..++.|-| |=+|.-|..+|+|
T Consensus 15 ~F~Tsk~TLtk~dg~fk~----------------------------m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNf 63 (230)
T KOG2716|consen 15 IFKTSKSTLTKFDGFFKT----------------------------MLETDIPVEKDESGCIFI---DRSPKHFDTILNF 63 (230)
T ss_pred EEEeehhhhhhhhhHHHH----------------------------HhhcCCccccCCcCcEEe---cCChhHHHHHHHh
Confidence 699999999888899999 9998763 223355666 6899999999999
Q ss_pred ccCCcccc--CccchHHHHHHhhchhhhhhhhhhhhhhccc
Q 007977 230 MYSSTLST--TTPTALLDVLMAADKFEVASCMRYCSRLLRN 268 (582)
Q Consensus 230 iYTg~l~i--~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~ 268 (582)
|-.|.+.+ +. ..+.+|+.=|.+|.++.|.+.|...+..
T Consensus 64 mRdGdv~LPe~~-kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 64 MRDGDVDLPESE-KELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred hhcccccCccch-HHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 99887775 44 6788999999999999999999998765
No 46
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.67 E-value=0.066 Score=57.56 Aligned_cols=60 Identities=12% Similarity=-0.087 Sum_probs=44.6
Q ss_pred ceEEeeeCccCeEEE-----ccccccceeEEeeCCeeeceeEEEccc----c-cc-c----------------CccCCcc
Q 007977 440 KVVEFELPRQQCVVY-----LDLKREECAHLFPAGRIYSQAFHLGGQ----G-FF-L----------------SAHCNMD 492 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~-----L~~~R~~~~vavl~g~IYn~iYviGG~----g-~~-~----------------dp~~nM~ 492 (582)
+..-.+|-.+++|.. -|.+|++|-+++.. +++++.||+ + +. | .|.-.-+
T Consensus 154 kD~W~fd~~trkweql~~~g~PS~RSGHRMvawK----~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK----RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hheeeeeeccchheeeccCCCCCCCccceeEEee----eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 455667889999998 47889999999999 677799997 1 11 1 2211268
Q ss_pred CCCCceEEEEE
Q 007977 493 QQSSFHCFGLF 503 (582)
Q Consensus 493 ~~R~~~~~~vl 503 (582)
++|++||+.+.
T Consensus 230 tpRSGcq~~vt 240 (521)
T KOG1230|consen 230 TPRSGCQFSVT 240 (521)
T ss_pred CCCCcceEEec
Confidence 99999998754
No 47
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.37 E-value=0.087 Score=56.64 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=70.6
Q ss_pred ceEEeeeCccCeEEE-----ccccccceeEEe-eCCeeeceeEEEccc-----c--cc-c------CccCC---------
Q 007977 440 KVVEFELPRQQCVVY-----LDLKREECAHLF-PAGRIYSQAFHLGGQ-----G--FF-L------SAHCN--------- 490 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~-----L~~~R~~~~vav-l~g~IYn~iYviGG~-----g--~~-~------dp~~n--------- 490 (582)
+...+|+.++++|.. -|.+|+.|.+++ .. |.+|+.||. + |+ | |-.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s----~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS----NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEecc----CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 355678999999987 567898886665 55 456799995 1 11 1 22222
Q ss_pred ccCCCCceEEEE-------EccccCCCCccccccccceeeccC---CCeeecCC---CCceeecceeEeccccccccccc
Q 007977 491 MDQQSSFHCFGL-------FLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY---KGNYTFTGGKAVGYRNLFGIPWT 557 (582)
Q Consensus 491 M~~~R~~~~~~v-------l~G~~~~~~lssvV~~~~aErYdP---~W~~va~m---~~~~~~~g~~avg~~~~~~~~~~ 557 (582)
-+.+|++|-+++ +||..+... ....|--.=+||. +|+.+.|- |.+|+.+...+.
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr--~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vt----------- 240 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNR--DYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVT----------- 240 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCC--ceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEec-----------
Confidence 788999999986 466622211 1111111155666 99998773 334543332222
Q ss_pred ceecCCceEEEcCeeeee
Q 007977 558 AFMADDSIYFINGNLHLR 575 (582)
Q Consensus 558 ~~~~~~~~~~i~~~~~~~ 575 (582)
-++.||+-||-+..|
T Consensus 241 ---pqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 241 ---PQGGIVVYGGYSKQR 255 (521)
T ss_pred ---CCCcEEEEcchhHhh
Confidence 146888888876655
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.71 E-value=0.021 Score=42.83 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=22.3
Q ss_pred cccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceeeccC---CCeeecCC
Q 007977 458 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVSKY 534 (582)
Q Consensus 458 ~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aErYdP---~W~~va~m 534 (582)
+|.+|+++.+++ +.+|++||.... ...++.+ ..||+ +|+.+++|
T Consensus 1 pR~~h~~~~~~~---~~i~v~GG~~~~------------------------~~~~~d~------~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGD---NSIYVFGGRDSS------------------------GSPLNDL------WIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-T---TEEEEE--EEE-------------------------TEE---E------EEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeC---CeEEEECCCCCC------------------------CcccCCE------EEEECCCCEEEECCCC
Confidence 478888888742 445599986210 0123454 88999 99999988
Q ss_pred CC
Q 007977 535 KG 536 (582)
Q Consensus 535 ~~ 536 (582)
|.
T Consensus 48 P~ 49 (49)
T PF13418_consen 48 PS 49 (49)
T ss_dssp --
T ss_pred CC
Confidence 73
No 49
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.23 E-value=0.07 Score=53.00 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=53.2
Q ss_pred HHhhccC--c-ccCCccEEEEecCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhh
Q 007977 196 LQLFSNG--M-RESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSR 264 (582)
Q Consensus 196 ~~mf~~~--~-~Es~~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~ 264 (582)
+.||.+. | +|+++..+-| +-+|.-|+.+|+|+-.|++.....-++.++|..|++||+-+|++.-+.
T Consensus 37 a~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 37 AAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 3488873 2 3444455555 789999999999999999987655799999999999999999987776
No 50
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=92.87 E-value=0.1 Score=45.20 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=54.4
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccC--CccEEEEecCCCCHHHHHHHHhc
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRES--EQRYVTLRIHASEEAALMELLNF 229 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es--~~~~v~l~~~~v~~~~f~~lL~f 229 (582)
+|-..| -+|.-|+-.|+ ||+|+..++ ..++|+++ ++...+++.+-+|
T Consensus 28 efiikr-e~AmtSgTira----------------------------ml~gpg~~se~~~n~v~f~--di~shiLeKvc~Y 76 (112)
T KOG3473|consen 28 EFIIKR-EHAMTSGTIRA----------------------------MLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEY 76 (112)
T ss_pred EEEEee-hhhhhhhHHHH----------------------------HHcCCccccccccceEEec--cchHHHHHHHHHH
Confidence 344444 35677899999 999876544 45789998 9999999999888
Q ss_pred c-----cCCc-c-----ccCccchHHHHHHhhchhh
Q 007977 230 M-----YSST-L-----STTTPTALLDVLMAADKFE 254 (582)
Q Consensus 230 i-----YTg~-l-----~i~~~~~v~~ll~aAd~l~ 254 (582)
+ ||+. . +|.+ +.+++||.||+++.
T Consensus 77 l~Yk~rY~~~s~eiPeF~Ipp-emaleLL~aAn~Le 111 (112)
T KOG3473|consen 77 LAYKVRYTNSSTEIPEFDIPP-EMALELLMAANYLE 111 (112)
T ss_pred hhheeeeccccccCCCCCCCH-HHHHHHHHHhhhhc
Confidence 7 6665 2 2455 89999999999985
No 51
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.11 E-value=0.39 Score=52.97 Aligned_cols=87 Identities=18% Similarity=0.073 Sum_probs=57.7
Q ss_pred ccccccceeEEee---CCeeeceeEEEccc-cccc--------------CccCC--ccCCCCceEEEEEccc----c---
Q 007977 455 LDLKREECAHLFP---AGRIYSQAFHLGGQ-GFFL--------------SAHCN--MDQQSSFHCFGLFLGM----Q--- 507 (582)
Q Consensus 455 L~~~R~~~~vavl---~g~IYn~iYviGG~-g~~~--------------dp~~n--M~~~R~~~~~~vl~G~----~--- 507 (582)
+|.+|..|.++.. +.+. +++||.||. |.++ .|... -+.||+-|.+.++|++ .
T Consensus 196 ~P~pRESHTAViY~eKDs~~-skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 196 LPPPRESHTAVIYTEKDSKK-SKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred CCCCcccceeEEEEeccCCc-ceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEeccee
Confidence 7889999887765 3323 678899997 5433 22222 6789999999888776 0
Q ss_pred --------------CCCCccccccccceeeccC---CCeeec-------CCCCceeecceeEecc
Q 007977 508 --------------EKGSVSFAVDYEFAARIKP---TEEYVS-------KYKGNYTFTGGKAVGY 548 (582)
Q Consensus 508 --------------~~~~lssvV~~~~aErYdP---~W~~va-------~m~~~~~~~g~~avg~ 548 (582)
+....+|. .|++. .|+.+- ..|++|..|+.+|+|-
T Consensus 275 Pl~~~~~~~~~hekEWkCTssl------~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 275 PLVMDDVKVATHEKEWKCTSSL------ACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGT 333 (830)
T ss_pred eeeccccccccccceeeeccce------eeeeecchheeeeeeccccccccccccccceeEEecc
Confidence 11223343 56666 787542 2577888888889993
No 52
>PF13964 Kelch_6: Kelch motif
Probab=92.05 E-value=0.21 Score=37.53 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.4
Q ss_pred eeEEEeec-------CceEEeeeCccCeEEE---ccccc
Q 007977 431 ERAYKYRP-------VKVVEFELPRQQCVVY---LDLKR 459 (582)
Q Consensus 431 ~~l~v~~~-------~~~ve~ydP~~~~W~~---L~~~R 459 (582)
+.||++|+ .+.+++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 46777654 4689999999999998 66554
No 53
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=90.99 E-value=0.16 Score=44.67 Aligned_cols=72 Identities=10% Similarity=0.207 Sum_probs=50.7
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCC-ccEEEEecCCCCHHHHHHHHhcc
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESE-QRYVTLRIHASEEAALMELLNFM 230 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~-~~~v~l~~~~v~~~~f~~lL~fi 230 (582)
+|.+.+.+. ..|..++. |+.+...+.. ...|.++ +++..+|+.+++|+
T Consensus 13 ~f~v~~~~a-~~S~~i~~----------------------------~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc 61 (104)
T smart00512 13 VFEVEREVA-RQSKTIKA----------------------------MIEDLGVDDENNNPIPLP--NVTSKILSKVIEYC 61 (104)
T ss_pred EEEecHHHH-HHHHHHHH----------------------------HHHccCcccCCCCCccCC--CcCHHHHHHHHHHH
Confidence 677777765 56777777 7765332222 2467776 99999999999999
Q ss_pred cCCccc-------------------cCccchHHHHHHhhchhhh
Q 007977 231 YSSTLS-------------------TTTPTALLDVLMAADKFEV 255 (582)
Q Consensus 231 YTg~l~-------------------i~~~~~v~~ll~aAd~l~v 255 (582)
+.-.-. ++. +.+.+|+.||++|++
T Consensus 62 ~~h~~~~~~~~~~~~~~~wD~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 62 EHHVDDPPSVADKDDIPTWDAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred HHcccCCCCccccccccHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 643211 333 578999999999875
No 54
>PF13854 Kelch_5: Kelch motif
Probab=89.90 E-value=0.31 Score=35.53 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.4
Q ss_pred ccccccceeEEeeCCeeeceeEEEccc
Q 007977 455 LDLKREECAHLFPAGRIYSQAFHLGGQ 481 (582)
Q Consensus 455 L~~~R~~~~vavl~g~IYn~iYviGG~ 481 (582)
+|.+|.+|++++.+++ +|+.||.
T Consensus 1 ~P~~R~~hs~~~~~~~----iyi~GG~ 23 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNN----IYIFGGY 23 (42)
T ss_pred CCCCccceEEEEECCE----EEEEcCc
Confidence 4788999999999954 5599997
No 55
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=89.72 E-value=0.71 Score=34.61 Aligned_cols=27 Identities=11% Similarity=-0.192 Sum_probs=23.6
Q ss_pred ceEEeeeCccCeEEE---ccccccceeEEe
Q 007977 440 KVVEFELPRQQCVVY---LDLKREECAHLF 466 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~---L~~~R~~~~vav 466 (582)
+.+..||+.+++|.. +|.+|.+|++++
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 477889999999998 788899998876
No 56
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.32 Score=46.50 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=46.8
Q ss_pred cEEEEecCCCCHHHHHHHHhcccCCccc-------------------------cCccchHHHHHHhhchhhhhhhhhhhh
Q 007977 209 RYVTLRIHASEEAALMELLNFMYSSTLS-------------------------TTTPTALLDVLMAADKFEVASCMRYCS 263 (582)
Q Consensus 209 ~~v~l~~~~v~~~~f~~lL~fiYTg~l~-------------------------i~~~~~v~~ll~aAd~l~v~~L~~~C~ 263 (582)
..|.|+ ++...+|+.+|+|++.-+-. +.. .++.+|+.||.+|+|+.|..+|+
T Consensus 44 ~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~-~tLfdli~AAnyLdi~gLl~~~c 120 (162)
T KOG1724|consen 44 DPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQ-GTLFDLILAANYLDIKGLLDLTC 120 (162)
T ss_pred CccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCH-HHHHHHHHHhhhcccHHHHHHHH
Confidence 357777 89999999999999874321 122 58999999999999999999999
Q ss_pred hhccc
Q 007977 264 RLLRN 268 (582)
Q Consensus 264 ~~L~~ 268 (582)
+.+..
T Consensus 121 k~va~ 125 (162)
T KOG1724|consen 121 KTVAN 125 (162)
T ss_pred HHHHH
Confidence 88765
No 57
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=86.34 E-value=0.34 Score=45.61 Aligned_cols=32 Identities=3% Similarity=-0.053 Sum_probs=28.0
Q ss_pred hhhcccccchhhhcccCcceecccceeeeccc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
.||+.+|++|++||+++..++++|+++|+|.+
T Consensus 115 ~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 115 ASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 49999999999999983349999999999964
No 58
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=85.70 E-value=1.1 Score=48.74 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=65.0
Q ss_pred EEEEE--EEEEeeeeeccccC--CccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccE--EEEecCCCC
Q 007977 146 TVLRV--KTVHISSPILAAKS--PFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRY--VTLRIHASE 219 (582)
Q Consensus 146 V~l~v--~~f~aHr~ILaa~S--~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~--v~l~~~~v~ 219 (582)
|-|.| +.|.-.+.-|+... .+|-+ +|++.+.-..... |-| |=+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsa----------------------------L~s~~~~s~~~~~~~iFI---DRD 61 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSA----------------------------LLSGRINSLKDESGAIFI---DRD 61 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHH----------------------------HhcCccccccCCCCceEe---cCC
Confidence 34555 35777776664433 47777 8888775444333 555 689
Q ss_pred HHHHHHHHhcccCCccccCccchHHHHHH-hhchhhhhhhhh---hhhhhccc
Q 007977 220 EAALMELLNFMYSSTLSTTTPTALLDVLM-AADKFEVASCMR---YCSRLLRN 268 (582)
Q Consensus 220 ~~~f~~lL~fiYTg~l~i~~~~~v~~ll~-aAd~l~v~~L~~---~C~~~L~~ 268 (582)
|+.|..+|+|+-||++++.. .....+|. -|.+||+.+|.+ +|+..+..
T Consensus 62 PdlFaviLn~LRTg~L~~~g-~~~~~llhdEA~fYGl~~llrrl~~~~~~F~G 113 (465)
T KOG2714|consen 62 PDLFAVILNLLRTGDLDASG-VFPERLLHDEAMFYGLTPLLRRLTLCEELFDG 113 (465)
T ss_pred chHHHHHHHHHhcCCCCCcc-CchhhhhhhhhhhcCcHHHHHHhhcCcccccc
Confidence 99999999999999999966 44444444 899999999985 77776653
No 59
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=85.70 E-value=1 Score=32.99 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=20.0
Q ss_pred eeEEEeec-------CceEEeeeCccCeEEEcc
Q 007977 431 ERAYKYRP-------VKVVEFELPRQQCVVYLD 456 (582)
Q Consensus 431 ~~l~v~~~-------~~~ve~ydP~~~~W~~L~ 456 (582)
+.+|+.|+ .+++++|||.+++|..++
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 45677554 468999999999999843
No 60
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=85.16 E-value=0.38 Score=45.38 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=27.4
Q ss_pred hhhcccccchhhhcccCcceecccceeeeccc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
.||+.+|++|++||++. ++++|+++|+|..
T Consensus 124 ~~G~~~fi~~~~Le~~~--yl~dD~l~Irc~v 153 (154)
T cd03781 124 GFGYPKFISHEDLKKRN--YIKDDAIFLRASV 153 (154)
T ss_pred ccchhHeeEHHHHhhCC--cccCCEEEEEEEe
Confidence 59999999999999887 8999999999964
No 61
>PLN02772 guanylate kinase
Probab=83.86 E-value=2 Score=46.85 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=38.2
Q ss_pred eeEEEeec-------CceEEeeeCccCeEEE------ccccccceeEEeeCCeeeceeEEEccc
Q 007977 431 ERAYKYRP-------VKVVEFELPRQQCVVY------LDLKREECAHLFPAGRIYSQAFHLGGQ 481 (582)
Q Consensus 431 ~~l~v~~~-------~~~ve~ydP~~~~W~~------L~~~R~~~~vavl~g~IYn~iYviGG~ 481 (582)
+.+|++|+ ...+.+||+.+++|.. -|.+|.+|+++++++ .+|+|+++.
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~---~rilv~~~~ 95 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK---DRILVIKKG 95 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC---ceEEEEeCC
Confidence 56788654 2378899999999987 678899999999954 566699864
No 62
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=83.40 E-value=1.2 Score=33.25 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=21.0
Q ss_pred eeccC---CCeeecCCCCceeecceeE
Q 007977 522 ARIKP---TEEYVSKYKGNYTFTGGKA 545 (582)
Q Consensus 522 ErYdP---~W~~va~m~~~~~~~g~~a 545 (582)
-+||+ +|+.++++|.+|..|..++
T Consensus 22 ~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 22 WVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred EEEECCCCEEEECCCCCCCccceEEEE
Confidence 78999 9999999999999887654
No 63
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=82.91 E-value=0.55 Score=43.71 Aligned_cols=30 Identities=3% Similarity=0.107 Sum_probs=27.4
Q ss_pred hhhcccccchhhhcccCcceecccceeeeccc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
.||+.+|++|++||++. ++++|+++|+|..
T Consensus 117 ~~G~~~fi~~~~Le~~~--yl~dD~l~I~c~V 146 (147)
T cd03776 117 GFGYVEFAHIEDLLQRG--FVKNDTLLIKIEV 146 (147)
T ss_pred CeeEceeeEHHHhhhCC--CccCCEEEEEEEE
Confidence 59999999999999886 8999999999975
No 64
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=82.68 E-value=1.3 Score=46.63 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=51.8
Q ss_pred hhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCHHHHHHH
Q 007977 257 SCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPLAGIEAV 328 (582)
Q Consensus 257 ~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~~~l~~l 328 (582)
=|++++..-- - .++++|++.++--++-. .++.|.+.|+.|+..|+.+|++..-++..|+-+.+..|
T Consensus 60 WLm~yv~~~~-p-~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 60 WLMRYVKGEP-P-SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred HHHHHhhcCC-C-cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 3455555522 2 58999999999766655 56899999999999999999984567888998877766
No 65
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=81.61 E-value=0.53 Score=43.25 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=29.6
Q ss_pred hhhhcccccchhhhcccCcceecccceeeeccccCC
Q 007977 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNMPDT 98 (582)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
.+||+.+|++|++|++....++.+|+.+++|...+.
T Consensus 102 ~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 102 KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred CccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 369999999999997433348999999999988764
No 66
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=78.57 E-value=0.87 Score=38.03 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=25.6
Q ss_pred CccchHHHHHHhhchhhhhhhhhhhhhhccc
Q 007977 238 TTPTALLDVLMAADKFEVASCMRYCSRLLRN 268 (582)
Q Consensus 238 ~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~ 268 (582)
+. ..+.+|+.||++|+|++|.+.|+..+..
T Consensus 12 ~~-~~L~~l~~AA~yL~I~~L~~~~~~~iA~ 41 (78)
T PF01466_consen 12 DN-DELFDLLNAANYLDIKGLLDLCCKYIAN 41 (78)
T ss_dssp -H-HHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 44 6899999999999999999999998866
No 67
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.58 E-value=7.8 Score=41.47 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=29.4
Q ss_pred ceEEeeeCccCeEEEcc----ccccceeEEeeCCeeeceeEEEccc
Q 007977 440 KVVEFELPRQQCVVYLD----LKREECAHLFPAGRIYSQAFHLGGQ 481 (582)
Q Consensus 440 ~~ve~ydP~~~~W~~L~----~~R~~~~vavl~g~IYn~iYviGG~ 481 (582)
+.+..|||.+|+|..|+ ....++.++.+++ ..+|+.||.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~---~~i~f~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG---TKIYFFGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCC---ceEEEEccc
Confidence 46778999999999843 3345678888886 255599996
No 68
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=76.29 E-value=0.86 Score=48.21 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=98.9
Q ss_pred EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCHHHHHHHHhccc
Q 007977 152 TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFMY 231 (582)
Q Consensus 152 ~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~f~~lL~fiY 231 (582)
.+.+|+.+|+..||.|.. +....-..+..+.+.+. .++...+..+..|+|
T Consensus 37 ~~~~~s~~l~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~ 86 (319)
T KOG1778|consen 37 LIPAHSLVLGPASPVFKK----------------------------VLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLY 86 (319)
T ss_pred hhHHHHhcccccchHHHH----------------------------HHhhhcchhhhhcceee--cccccccchhhhhhc
Confidence 699999999999999988 33222122223344554 788899999999999
Q ss_pred CCccccCc-cchHHHHHHhhchhhhhhhhhhhhhhcccCcCCccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhh
Q 007977 232 SSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLRNLPMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDI 310 (582)
Q Consensus 232 Tg~l~i~~-~~~v~~ll~aAd~l~v~~L~~~C~~~L~~l~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v 310 (582)
.+ ++.-. ..-..+++.+...+-++.++..|...+..--++..++..++..+..+ ....|..++...+...|...
T Consensus 87 ~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H 161 (319)
T KOG1778|consen 87 SS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLH 161 (319)
T ss_pred cc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHH
Confidence 98 43222 13466778777899999999999988876238889999999988877 56788888888998888888
Q ss_pred hhhhHhhcC
Q 007977 311 SKFQEEVLN 319 (582)
Q Consensus 311 ~~~~~~f~~ 319 (582)
.+ ++.+..
T Consensus 162 ~~-t~~~~~ 169 (319)
T KOG1778|consen 162 LQ-TEKWFA 169 (319)
T ss_pred hc-ccCcee
Confidence 77 665543
No 69
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=72.52 E-value=0.92 Score=48.47 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=56.0
Q ss_pred CCCCCceeEEEEEE---EEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEe
Q 007977 138 PAWSMDLSTVLRVK---TVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLR 214 (582)
Q Consensus 138 ~~~~~~~DV~l~v~---~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~ 214 (582)
+..+.-.|+++.++ .|.|||..|+|+|.+|.. +.+ ||.- ...+|.-
T Consensus 144 t~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~--k~v-----------------------~~~~-----~~heI~~- 192 (516)
T KOG0511|consen 144 TFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFP--KDV-----------------------MFYV-----QGHEIEA- 192 (516)
T ss_pred cccccccchHHHhhccccccHHHHHHHhhhcccCc--hhh-----------------------hhcc-----ccCchhh-
Confidence 44556678888773 588999999999998876 111 2321 1122321
Q ss_pred cCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhh
Q 007977 215 IHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCM 259 (582)
Q Consensus 215 ~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~ 259 (582)
..+-+.+|..++.|+|-..-.+-. +.--.|+....+|+++.|.
T Consensus 193 -~~v~~~~f~~flk~lyl~~na~~~-~qynallsi~~kF~~e~l~ 235 (516)
T KOG0511|consen 193 -HRVILSAFSPFLKQLYLNTNAEWK-DQYNALLSIEVKFSKEKLS 235 (516)
T ss_pred -hhhhHhhhhHHHHHHHHhhhhhhh-hHHHHHHhhhhhccHHHhH
Confidence 257788999999999976333322 3445566666666655443
No 70
>smart00202 SR Scavenger receptor Cys-rich. The sea ucrhin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.
Probab=71.47 E-value=0.87 Score=39.43 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=41.0
Q ss_pred CCCCCcccccCCccccceeeEeeccCCCCCCCCCCCCcchhhhhcccccchhhhcccCcceecccceeeeccc
Q 007977 23 PDSDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
+-.+.+|.-++++++||+|++........+..++.+-+++ |. ....|.+.|..+.+|..
T Consensus 24 ~VC~~~w~~~~A~vvCrqlG~~~~~~~~~~~~~~~~~~~~--~~------------~~~~C~G~E~sl~~C~~ 82 (101)
T smart00202 24 TVCDDGWDLRDANVVCRQLGFGGALSASGSAYFGPGSGPI--WL------------DNVRCTGTEASLSDCPH 82 (101)
T ss_pred CeeCCCCChhHHHHHHHHcCCCCcccceeccccCCCCCCe--EE------------EcceEcCCCCCHHHCCC
Confidence 3457789999999999999999888665444455544444 44 34457777777777754
No 71
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=67.90 E-value=2.6 Score=38.97 Aligned_cols=31 Identities=3% Similarity=0.066 Sum_probs=27.3
Q ss_pred hhhhcccccchhhhcccCcceecccceeeeccc
Q 007977 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
.+||+.+|++|++|+++. ++++|+.+|+|..
T Consensus 118 ~~~G~~~fi~~~~L~~~g--fl~dD~l~I~~~v 148 (149)
T cd00270 118 IGFGYPEFVPLEKLESRG--YVKDDTLFIKVEV 148 (149)
T ss_pred CCcCcceEeEHHHhccCC--CEeCCEEEEEEEE
Confidence 469999999999999775 8999999999964
No 72
>PLN02772 guanylate kinase
Probab=67.53 E-value=12 Score=40.91 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=36.3
Q ss_pred cccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceeeccC---CCeeec--
Q 007977 458 KREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARIKP---TEEYVS-- 532 (582)
Q Consensus 458 ~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aErYdP---~W~~va-- 532 (582)
++..+++++.++++| |+||. ++.+.+++.| -+||+ +|....
T Consensus 24 ~~~~~tav~igdk~y----v~GG~-------------------------~d~~~~~~~v-----~i~D~~t~~W~~P~V~ 69 (398)
T PLN02772 24 PKNRETSVTIGDKTY----VIGGN-------------------------HEGNTLSIGV-----QILDKITNNWVSPIVL 69 (398)
T ss_pred CCCcceeEEECCEEE----EEccc-------------------------CCCccccceE-----EEEECCCCcEeccccc
Confidence 566788888996665 88874 1222234444 78999 565432
Q ss_pred -CCCCceeecceeEecc
Q 007977 533 -KYKGNYTFTGGKAVGY 548 (582)
Q Consensus 533 -~m~~~~~~~g~~avg~ 548 (582)
+-|.++-.|..+.++.
T Consensus 70 G~~P~~r~GhSa~v~~~ 86 (398)
T PLN02772 70 GTGPKPCKGYSAVVLNK 86 (398)
T ss_pred CCCCCCCCcceEEEECC
Confidence 3466777777777774
No 73
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.41 E-value=12 Score=40.15 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=52.1
Q ss_pred ccCeEEE---cc-ccccceeEEeeCCeeeceeEEEcccccccCccCCccCCCCceEEEEEccccCCCCccccccccceee
Q 007977 448 RQQCVVY---LD-LKREECAHLFPAGRIYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 523 (582)
Q Consensus 448 ~~~~W~~---L~-~~R~~~~vavl~g~IYn~iYviGG~g~~~dp~~nM~~~R~~~~~~vl~G~~~~~~lssvV~~~~aEr 523 (582)
....|+. .| .+|.+...++++|+|| +.||.|..-.+ ....++.+ =+
T Consensus 68 ~~k~W~~~a~FpG~~rnqa~~a~~~~kLy----vFgG~Gk~~~~--------------------~~~~~nd~------Y~ 117 (381)
T COG3055 68 PGKGWTKIADFPGGARNQAVAAVIGGKLY----VFGGYGKSVSS--------------------SPQVFNDA------YR 117 (381)
T ss_pred CCCCceEcccCCCcccccchheeeCCeEE----EeeccccCCCC--------------------CceEeeee------EE
Confidence 3467987 33 5688888899997666 99998532100 00112333 78
Q ss_pred ccC---CCeeecCCCCceeecceeEecccccccccccceecCCceEEEcCeee
Q 007977 524 IKP---TEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLH 573 (582)
Q Consensus 524 YdP---~W~~va~m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 573 (582)
||| +|..+.... |+.+.|..++.. ++..+||.||+-|
T Consensus 118 y~p~~nsW~kl~t~s-P~gl~G~~~~~~------------~~~~i~f~GGvn~ 157 (381)
T COG3055 118 YDPSTNSWHKLDTRS-PTGLVGASTFSL------------NGTKIYFFGGVNQ 157 (381)
T ss_pred ecCCCChhheecccc-ccccccceeEec------------CCceEEEEccccH
Confidence 999 999986443 333566555543 2348999999843
No 74
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=65.76 E-value=2.7 Score=37.94 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.6
Q ss_pred hhhcccccchhhhcccCcceecc--cceeeeccc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQ--REQILQCNM 95 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~ 95 (582)
+||+.+|++|++|++++ ++.+ |+.+++|.+
T Consensus 98 ~wG~~~Fi~~~~L~~~g--fl~~~~D~l~i~~~v 129 (132)
T cd03773 98 CWGYNRFFRLDLLINEG--YLLPENDTLILRFSV 129 (132)
T ss_pred CcCHHHhccHHHHhhCC--CcCCCCCEEEEEEEE
Confidence 49999999999998765 8888 999999976
No 75
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=64.17 E-value=5 Score=39.27 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=27.0
Q ss_pred hhhcccccchhhhcccCcceecccceeeeccc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
.||+.+|++|++||++. |+++|+++|+|.+
T Consensus 154 ~~G~~~Fi~~~~Le~~~--ylkdD~l~Irv~v 183 (186)
T cd03777 154 ASGCPVFVAQTVLENGT--YIKDDTIFIKVIV 183 (186)
T ss_pred CCCchheeEHHHhccCC--cEeCCEEEEEEEE
Confidence 49999999999999987 8999999998854
No 76
>PF00530 SRCR: Scavenger receptor cysteine-rich domain; InterPro: IPR001190 The egg peptide speract receptor is a transmembrane glycoprotein []. Other members of this family include the macrophage scavenger receptor type I (a membrane glycoprotein implicated in the pathologic deposition of cholesterol in arterial walls during artherogenesis), an enteropeptidase and T-cell surface glycoprotein CD5 (may act as a receptor in regulating T-cell proliferation).; GO: 0005044 scavenger receptor activity, 0016020 membrane; PDB: 2XRC_D 2JP0_A 2JOP_A 2OYA_A 2OY3_A 1BY2_A 2OTT_Y 2JA4_A.
Probab=63.34 E-value=0.78 Score=39.08 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=37.9
Q ss_pred CCCcccccCCccccceeeEeeccCCCCCCCCCCCCcchhhhhcccccchhhhcccCcceecccceeeecccc
Q 007977 25 SDFGFAFNDSNFSDRVLRIEIMPDLPDSKSDGDACSSIADWARNRKRRREEIKKDTVDVLVQREQILQCNMP 96 (582)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
.+.+|+.++++++||+|++..+...+.....+.+-.++ |. ....|.+.+..+.+|...
T Consensus 24 C~~~w~~~~a~vvCrqLG~~~~~~~~~~~~~~~~~~~~--~~------------~~~~C~g~e~~l~~C~~~ 81 (99)
T PF00530_consen 24 CDDGWSMNEANVVCRQLGYGGASSTSSSSSFGSGSGPI--WL------------SNVNCSGNETSLSECTHS 81 (99)
T ss_dssp BTTT-SHHHHHHHHHHTTSSEEEEEEECTTTTSS-S-E--CE------------CCEEEBSSTSSGGGSBSS
T ss_pred ECCCcchhHHHHHhhhhhccccceeeeecccccccccc--cc------------cCCEecCCCCcHhhCCCc
Confidence 35679999999999999997666554444444444444 55 344577778888888554
No 77
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=62.61 E-value=3.7 Score=37.54 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred hhhhcccccchhhhcccCcceecccceeeecccc
Q 007977 63 ADWARNRKRRREEIKKDTVDVLVQREQILQCNMP 96 (582)
Q Consensus 63 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
.+||+.+|++|++|++..-.++.+|+.+++|...
T Consensus 98 ~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~ 131 (137)
T cd03772 98 NDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQ 131 (137)
T ss_pred CCccchheeEHHHhcCCCCCcEECCEEEEEEEEE
Confidence 4699999999999974433489999999999764
No 78
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=62.57 E-value=3.7 Score=38.64 Aligned_cols=31 Identities=6% Similarity=-0.008 Sum_probs=26.7
Q ss_pred hhhcccccchhhhcccCcceecccceeeecc
Q 007977 64 DWARNRKRRREEIKKDTVDVLVQREQILQCN 94 (582)
Q Consensus 64 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 94 (582)
.||+.+|++|++||++...|+.+|+++|.|.
T Consensus 116 ~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~ 146 (148)
T cd03780 116 ASGCPRFVAHSVLENAKNTYIKDDTLFLKVA 146 (148)
T ss_pred CcChhheeEHHHhhcccCCcCcCCEEEEEEE
Confidence 4999999999999987434899999999874
No 79
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=6.2 Score=36.23 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=43.4
Q ss_pred EEEecCCCCHHHHHHHHhcccCCccccCc------------------------cchHHHHHHhhchhhhhhhhhhhhhhc
Q 007977 211 VTLRIHASEEAALMELLNFMYSSTLSTTT------------------------PTALLDVLMAADKFEVASCMRYCSRLL 266 (582)
Q Consensus 211 v~l~~~~v~~~~f~~lL~fiYTg~l~i~~------------------------~~~v~~ll~aAd~l~v~~L~~~C~~~L 266 (582)
+.++..++...+|+.+++|+-..+-..+. .+++.++..||+++.++.|.+.|+..+
T Consensus 39 ~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiv 118 (158)
T COG5201 39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIV 118 (158)
T ss_pred CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 34444489999999999999543222110 157889999999999999999998887
Q ss_pred cc
Q 007977 267 RN 268 (582)
Q Consensus 267 ~~ 268 (582)
..
T Consensus 119 ae 120 (158)
T COG5201 119 AE 120 (158)
T ss_pred HH
Confidence 66
No 80
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=62.04 E-value=10 Score=30.06 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=35.2
Q ss_pred EEEEeeeeeccccCCccccccccccccccchhhhHHHHHHHHHHHHHhhccCcccCCccEEEEecCCCCHHHHHHHHhcc
Q 007977 151 KTVHISSPILAAKSPFFYKVNVPSLVYAFCIPWFLLLWLVILCIFLQLFSNGMRESEQRYVTLRIHASEEAALMELLNFM 230 (582)
Q Consensus 151 ~~f~aHr~ILaa~S~yF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mf~~~~~Es~~~~v~l~~~~v~~~~f~~lL~fi 230 (582)
..|.+.+.+. ..|..++. |+.+.-.+.. .|.|+ +++...|+.+++|+
T Consensus 11 ~~f~V~~~~a-~~S~~i~~----------------------------ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc 57 (62)
T PF03931_consen 11 QEFEVSREAA-KQSKTIKN----------------------------MLEDLGDEDE--PIPLP--NVSSRILKKVIEWC 57 (62)
T ss_dssp EEEEEEHHHH-TTSHHHHH----------------------------HHHCTCCCGT--EEEET--TS-HHHHHHHHHHH
T ss_pred CEEEeeHHHH-HHhHHHHH----------------------------HHhhhccccc--ccccC--ccCHHHHHHHHHHH
Confidence 3677777766 46888888 8876332222 67777 99999999999998
Q ss_pred cC
Q 007977 231 YS 232 (582)
Q Consensus 231 YT 232 (582)
+.
T Consensus 58 ~~ 59 (62)
T PF03931_consen 58 EH 59 (62)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 81
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=58.08 E-value=14 Score=40.28 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=26.1
Q ss_pred chHHHHHHhhchhhhhhhhhhhhhhccc
Q 007977 241 TALLDVLMAADKFEVASCMRYCSRLLRN 268 (582)
Q Consensus 241 ~~v~~ll~aAd~l~v~~L~~~C~~~L~~ 268 (582)
+|+-.++.||..|+++.|..+|..|+..
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr 175 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR 175 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc
Confidence 7888999999999999999999999975
No 82
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=55.96 E-value=11 Score=39.45 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=43.1
Q ss_pred hhccCcc---cCCccEEEEecCCCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhh
Q 007977 198 LFSNGMR---ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVA 256 (582)
Q Consensus 198 mf~~~~~---Es~~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~ 256 (582)
||.++.. ..+..+..+- ++++..+|+++|+|--||.+...+.-.+.+|-+|+|+|.|+
T Consensus 125 mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 125 MFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred hhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 7766542 2223456664 48999999999999999999876656777888888877554
No 83
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=54.20 E-value=21 Score=26.44 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=19.8
Q ss_pred eeEEEeecC---------ceEEeeeCccCeEEEcc
Q 007977 431 ERAYKYRPV---------KVVEFELPRQQCVVYLD 456 (582)
Q Consensus 431 ~~l~v~~~~---------~~ve~ydP~~~~W~~L~ 456 (582)
..||++|+. +.+++||+.+++|..++
T Consensus 12 ~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 12 GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 456776554 47899999999999743
No 84
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=46.73 E-value=19 Score=30.46 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHhhchhhhhhhhhhhhhhcccC-----------cCCccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhh----
Q 007977 244 LDVLMAADKFEVASCMRYCSRLLRNL-----------PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYK---- 308 (582)
Q Consensus 244 ~~ll~aAd~l~v~~L~~~C~~~L~~l-----------~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~---- 308 (582)
.+++..|+.|++..|.+.|.+|+..- .++.+....++.--+.. . ..-..+.+++.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~-v-~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLN-V-SSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS---E-CTCCCHHHHHHHHHHCTHHHHTT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccc-c-ccHHHHHHHHHHHHHhCHHHHHH
Confidence 57889999999999999999998751 22333333333321110 0 1224677888888875543
Q ss_pred ---hhhhhhHhhcCCCHHHHHHH
Q 007977 309 ---DISKFQEEVLNLPLAGIEAV 328 (582)
Q Consensus 309 ---~v~~~~~~f~~L~~~~l~~l 328 (582)
.+.+ .=.|..|+.+.+...
T Consensus 80 ~~~~Ll~-~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 80 HLKELLS-CIRFPLLSPEELQNV 101 (103)
T ss_dssp THHHHHC-CCHHHCT-HHHHHHC
T ss_pred HHHHHHH-hCCcccCCHHHHHHH
Confidence 2222 234555665555443
No 85
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=44.78 E-value=18 Score=34.76 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHhcccCCccccCccchHHHHHHhhchhhhhhhhhhhhhhccc
Q 007977 217 ASEEAALMELLNFMYSSTLSTTTPTALLDVLMAADKFEVASCMRYCSRLLRN 268 (582)
Q Consensus 217 ~v~~~~f~~lL~fiYTg~l~i~~~~~v~~ll~aAd~l~v~~L~~~C~~~L~~ 268 (582)
+-+|.-|..+|+|+-.|++.++. -.-..+|.-|++|.+++|..+..+.+..
T Consensus 70 DRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 70 DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred ccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 78999999999999999999987 6677899999999999999877777654
No 86
>PF13854 Kelch_5: Kelch motif
Probab=42.84 E-value=21 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=19.2
Q ss_pred CCCceeecceeEecccccccccccceecCCceEEEcCeee
Q 007977 534 YKGNYTFTGGKAVGYRNLFGIPWTAFMADDSIYFINGNLH 573 (582)
Q Consensus 534 m~~~~~~~g~~avg~~~~~~~~~~~~~~~~~~~~i~~~~~ 573 (582)
+|.+|..|+.+++| +++|++||..+
T Consensus 1 ~P~~R~~hs~~~~~---------------~~iyi~GG~~~ 25 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG---------------NNIYIFGGYSG 25 (42)
T ss_pred CCCCccceEEEEEC---------------CEEEEEcCccC
Confidence 46678888777776 78899999864
No 87
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=41.59 E-value=61 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred EeeeCccCeEEEcccccccee--EEe-eCCeeeceeEEEccc
Q 007977 443 EFELPRQQCVVYLDLKREECA--HLF-PAGRIYSQAFHLGGQ 481 (582)
Q Consensus 443 e~ydP~~~~W~~L~~~R~~~~--vav-l~g~IYn~iYviGG~ 481 (582)
-.|||.++++.+|...-.-|| .++ .+|++ .++||.
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l----l~tGG~ 86 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL----LQTGGD 86 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCE----EEeCCC
Confidence 468999999999776544332 223 35444 488885
No 88
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=38.79 E-value=71 Score=33.54 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=10.6
Q ss_pred eecCCceEEEcCe
Q 007977 559 FMADDSIYFINGN 571 (582)
Q Consensus 559 ~~~~~~~~~i~~~ 571 (582)
+.-+|++|||||-
T Consensus 161 lar~D~VYilGGH 173 (337)
T PF03089_consen 161 LARNDCVYILGGH 173 (337)
T ss_pred EecCceEEEEccE
Confidence 4557999999995
No 89
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=38.63 E-value=16 Score=33.21 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred hhhhcccccchhhhccc----Ccceecccceeeec
Q 007977 63 ADWARNRKRRREEIKKD----TVDVLVQREQILQC 93 (582)
Q Consensus 63 ~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~ 93 (582)
.+||+.+|++|++|++- +..++.+|+.+|++
T Consensus 97 ~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~ 131 (134)
T cd03775 97 KDWGFTRFIELRKLAHRTPDKPSPFLENGELNITV 131 (134)
T ss_pred CCCChhHcccHHHHcccccCCCCceeECCEEEEEE
Confidence 46999999999999842 12388999888865
No 90
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=32.36 E-value=49 Score=33.81 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=32.0
Q ss_pred cCceEEeeeCcc----CeEEE----ccccccceeEEeeCCeeeceeEEEccc
Q 007977 438 PVKVVEFELPRQ----QCVVY----LDLKREECAHLFPAGRIYSQAFHLGGQ 481 (582)
Q Consensus 438 ~~~~ve~ydP~~----~~W~~----L~~~R~~~~vavl~g~IYn~iYviGG~ 481 (582)
+.+.+..|+|.. ..|.. |..+|+..++..+.+ ++++|+||.
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D---G~vlIvGG~ 137 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD---GRVLIVGGS 137 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCC---CCEEEEeCc
Confidence 356778888865 67876 889999998888754 566799998
No 91
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.32 E-value=1e+02 Score=31.06 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=46.7
Q ss_pred hhccCcc--cCCccEEEEecCCCCHHHHHHHHhcccCCccccCc-cchHHHHHHhhchhhhhhhhhhhhhhcc
Q 007977 198 LFSNGMR--ESEQRYVTLRIHASEEAALMELLNFMYSSTLSTTT-PTALLDVLMAADKFEVASCMRYCSRLLR 267 (582)
Q Consensus 198 mf~~~~~--Es~~~~v~l~~~~v~~~~f~~lL~fiYTg~l~i~~-~~~v~~ll~aAd~l~v~~L~~~C~~~L~ 267 (582)
||++... .......-| +=+...|+-+|+|+-|..+.+.. ..++..|..-|++|+++.+..++.+-..
T Consensus 38 ~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 38 MFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred hcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcccc
Confidence 7775221 122344555 57788999999999996655532 1568899999999999988876655443
No 92
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=22.31 E-value=46 Score=28.48 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=26.0
Q ss_pred hhhhhcccccchhhhcccCcceecccceeeeccc
Q 007977 62 IADWARNRKRRREEIKKDTVDVLVQREQILQCNM 95 (582)
Q Consensus 62 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 95 (582)
-.+||..+|+++++|++... +.+++.+++|..
T Consensus 94 ~~~~G~~~fi~~~~l~~~~~--~~~d~l~i~~~v 125 (126)
T cd00121 94 GSGWGFPKFISWDDLEDSYY--LVDDSLTIEVEV 125 (126)
T ss_pred CCCCChHHeeEHHHhccCCc--EECCEEEEEEEE
Confidence 35699999999999998752 778888888754
No 93
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=21.74 E-value=1e+02 Score=34.43 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=36.2
Q ss_pred cCCccchhhhccccchhhhhhhhhhHHHHHHHHHHHhhhhhhhhhHhhcCCCH
Q 007977 270 PMTCESALLYLDLPSSVLMADAVQPLTDTAKQFLAARYKDISKFQEEVLNLPL 322 (582)
Q Consensus 270 ~l~~~n~~~~l~la~~~~~~~~~~~L~~~~~~fi~~~f~~v~~~~~~f~~L~~ 322 (582)
.+..+|++.++..|..| ..+.|++.|.+||..+.... .+|+.|++
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~~----naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMAD----NAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCCh----HHHHHHHH
Confidence 57899999999999999 68999999999999876544 34554444
Done!