Query 007979
Match_columns 582
No_of_seqs 397 out of 3542
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 17:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-49 4.5E-54 420.3 17.6 473 1-551 366-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-40 2.5E-45 373.6 23.5 481 4-557 401-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 9.7E-27 2.1E-31 261.8 17.9 355 151-553 70-440 (968)
4 PLN00113 leucine-rich repeat r 99.9 8.5E-27 1.8E-31 262.3 16.1 156 149-315 139-295 (968)
5 KOG0444 Cytoskeletal regulator 99.9 6.8E-26 1.5E-30 219.2 -3.9 340 150-555 32-376 (1255)
6 PLN03210 Resistant to P. syrin 99.9 6E-23 1.3E-27 231.1 17.3 342 148-555 587-944 (1153)
7 KOG0444 Cytoskeletal regulator 99.9 7.2E-25 1.6E-29 212.1 -6.7 337 149-548 54-393 (1255)
8 KOG4194 Membrane glycoprotein 99.9 4.1E-23 8.9E-28 198.6 2.6 161 355-549 285-447 (873)
9 KOG4194 Membrane glycoprotein 99.9 9.8E-23 2.1E-27 196.0 3.5 347 148-553 76-428 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 3E-22 6.5E-27 184.3 -7.3 116 410-553 424-540 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-20 3.8E-25 172.8 -5.1 331 152-551 70-468 (565)
12 KOG0618 Serine/threonine phosp 99.7 1.4E-19 3E-24 183.7 -5.9 135 152-305 47-181 (1081)
13 KOG0618 Serine/threonine phosp 99.7 5E-19 1.1E-23 179.7 -4.7 69 395-465 239-330 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 6.7E-15 1.5E-19 154.4 13.0 112 173-314 201-312 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 1.7E-14 3.7E-19 152.4 10.7 114 174-313 179-292 (754)
16 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.7E-21 130.4 -5.5 162 229-463 30-191 (264)
17 KOG4658 Apoptotic ATPase [Sign 99.5 8.8E-15 1.9E-19 157.0 4.5 309 170-555 520-843 (889)
18 KOG4237 Extracellular matrix p 99.5 4.1E-15 8.9E-20 137.5 -2.4 73 392-465 269-342 (498)
19 PRK15387 E3 ubiquitin-protein 99.5 5.9E-13 1.3E-17 140.0 13.3 126 154-312 205-330 (788)
20 KOG0617 Ras suppressor protein 99.4 1.7E-15 3.7E-20 123.8 -5.3 149 150-313 33-182 (264)
21 PRK15370 E3 ubiquitin-protein 99.4 2.8E-13 6E-18 143.3 9.0 249 149-496 177-426 (754)
22 KOG4237 Extracellular matrix p 99.4 5.7E-15 1.2E-19 136.6 -4.0 128 174-313 68-197 (498)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-13 3.5E-18 134.7 -0.6 249 168-455 18-289 (319)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.1E-12 2.4E-17 128.7 0.7 263 151-455 24-318 (319)
25 PF00931 NB-ARC: NB-ARC domain 98.9 4.4E-11 9.5E-16 115.3 -3.5 73 5-77 210-285 (287)
26 KOG3207 Beta-tubulin folding c 98.8 9E-10 1.9E-14 104.1 0.8 211 229-526 118-335 (505)
27 KOG0532 Leucine-rich repeat (L 98.8 1.8E-10 4E-15 112.1 -4.4 125 171-312 73-197 (722)
28 PF14580 LRR_9: Leucine-rich r 98.8 4.9E-09 1.1E-13 90.3 4.1 130 170-317 16-153 (175)
29 COG4886 Leucine-rich repeat (L 98.8 1.3E-08 2.9E-13 102.8 7.7 107 199-314 112-219 (394)
30 KOG1259 Nischarin, modulator o 98.7 3E-09 6.4E-14 95.6 -0.7 114 169-290 178-317 (490)
31 PLN03150 hypothetical protein; 98.7 5.4E-08 1.2E-12 103.0 8.4 103 204-311 419-522 (623)
32 PF14580 LRR_9: Leucine-rich r 98.6 3.7E-08 8E-13 85.0 5.0 125 149-290 18-150 (175)
33 KOG1909 Ran GTPase-activating 98.6 8.2E-10 1.8E-14 101.5 -5.6 260 199-528 26-309 (382)
34 KOG1909 Ran GTPase-activating 98.6 1.6E-08 3.5E-13 93.1 2.5 265 166-455 23-309 (382)
35 COG4886 Leucine-rich repeat (L 98.6 3.1E-08 6.6E-13 100.2 4.2 186 166-439 109-295 (394)
36 PLN03150 hypothetical protein; 98.6 7.4E-08 1.6E-12 102.0 7.2 83 233-315 419-501 (623)
37 KOG4341 F-box protein containi 98.6 3.5E-09 7.7E-14 99.6 -3.2 145 395-557 292-442 (483)
38 KOG0532 Leucine-rich repeat (L 98.5 5.5E-09 1.2E-13 102.1 -3.2 136 163-316 111-246 (722)
39 KOG3207 Beta-tubulin folding c 98.5 2.8E-08 6.1E-13 94.2 1.6 157 149-314 120-281 (505)
40 KOG4341 F-box protein containi 98.5 7.5E-09 1.6E-13 97.5 -2.3 142 396-558 267-418 (483)
41 KOG1259 Nischarin, modulator o 98.5 3E-08 6.5E-13 89.3 0.1 127 171-315 282-410 (490)
42 PF13855 LRR_8: Leucine rich r 98.3 7.3E-07 1.6E-11 62.8 3.7 57 204-267 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4E-13 90.6 -5.5 182 257-495 186-373 (419)
44 PF13855 LRR_8: Leucine rich r 98.3 1.2E-06 2.5E-11 61.8 4.2 58 232-291 1-60 (61)
45 KOG2120 SCF ubiquitin ligase, 98.1 3.4E-07 7.5E-12 82.6 -2.3 62 394-455 310-374 (419)
46 KOG0531 Protein phosphatase 1, 98.0 5.8E-07 1.3E-11 91.0 -1.6 125 171-313 70-195 (414)
47 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 52.9 3.7 34 233-267 2-35 (44)
48 PRK15386 type III secretion pr 98.0 1.3E-05 2.7E-10 78.1 6.7 142 390-551 45-187 (426)
49 COG5238 RNA1 Ran GTPase-activa 97.9 2.1E-06 4.6E-11 76.6 -0.1 87 202-290 29-130 (388)
50 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 72.8 9.3 66 199-275 48-113 (426)
51 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8E-10 49.4 3.4 40 203-249 1-40 (44)
52 KOG2982 Uncharacterized conser 97.6 2.5E-05 5.4E-10 70.9 1.8 106 175-290 47-156 (418)
53 KOG0531 Protein phosphatase 1, 97.5 1.3E-05 2.9E-10 81.2 -1.3 106 201-317 70-175 (414)
54 KOG3665 ZYG-1-like serine/thre 97.5 8.9E-05 1.9E-09 78.7 4.8 127 170-310 145-281 (699)
55 COG5238 RNA1 Ran GTPase-activa 97.4 0.00011 2.3E-09 66.0 3.4 98 168-267 25-131 (388)
56 KOG2982 Uncharacterized conser 97.4 5.3E-05 1.2E-09 68.8 1.5 89 170-267 68-157 (418)
57 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.2E-09 77.1 2.9 109 173-292 122-232 (699)
58 KOG4579 Leucine-rich repeat (L 97.3 8.2E-05 1.8E-09 59.6 0.5 106 174-291 28-134 (177)
59 KOG1859 Leucine-rich repeat pr 97.2 5.8E-06 1.3E-10 83.8 -7.5 22 166-187 102-123 (1096)
60 KOG1859 Leucine-rich repeat pr 97.1 3.7E-05 8.1E-10 78.2 -3.1 119 155-291 169-290 (1096)
61 KOG4579 Leucine-rich repeat (L 97.0 0.0002 4.3E-09 57.5 0.2 92 170-275 50-141 (177)
62 KOG1644 U2-associated snRNP A' 97.0 0.00087 1.9E-08 57.7 3.9 107 420-552 41-151 (233)
63 KOG1947 Leucine rich repeat pr 96.7 0.0002 4.3E-09 74.7 -2.2 43 517-559 401-445 (482)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0028 6E-08 57.1 2.6 86 230-317 63-156 (260)
65 KOG1644 U2-associated snRNP A' 96.2 0.0059 1.3E-07 52.8 4.1 92 390-495 57-150 (233)
66 KOG2123 Uncharacterized conser 96.1 0.00056 1.2E-08 61.8 -2.7 99 172-286 18-123 (388)
67 KOG3864 Uncharacterized conser 95.9 0.00046 1E-08 59.4 -3.9 68 482-555 122-190 (221)
68 KOG2123 Uncharacterized conser 95.8 0.00063 1.4E-08 61.4 -3.5 100 201-310 17-123 (388)
69 KOG2739 Leucine-rich acidic nu 95.8 0.0043 9.4E-08 55.9 1.6 84 230-317 41-129 (260)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0051 1.1E-07 32.7 0.9 9 234-242 2-10 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.008 1.7E-07 31.9 1.0 21 257-278 1-21 (22)
72 KOG1947 Leucine rich repeat pr 95.3 0.0014 3E-08 68.4 -3.9 169 361-558 186-368 (482)
73 PF13306 LRR_5: Leucine rich r 94.0 0.17 3.8E-06 41.6 6.5 67 393-464 8-76 (129)
74 KOG3864 Uncharacterized conser 94.0 0.0061 1.3E-07 52.7 -2.4 68 440-529 121-188 (221)
75 PF13306 LRR_5: Leucine rich r 93.0 0.22 4.8E-06 40.9 5.5 103 168-289 7-112 (129)
76 PF13504 LRR_7: Leucine rich r 92.7 0.079 1.7E-06 26.0 1.3 10 258-267 3-12 (17)
77 KOG0473 Leucine-rich repeat pr 92.2 0.0052 1.1E-07 54.2 -5.4 85 199-291 38-122 (326)
78 KOG0473 Leucine-rich repeat pr 88.4 0.025 5.4E-07 50.1 -4.6 90 221-313 30-120 (326)
79 smart00369 LRR_TYP Leucine-ric 88.0 0.4 8.7E-06 26.5 1.7 19 256-275 2-20 (26)
80 smart00370 LRR Leucine-rich re 88.0 0.4 8.7E-06 26.5 1.7 19 256-275 2-20 (26)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.51 1.1E-05 26.0 2.1 21 231-252 1-21 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.51 1.1E-05 26.0 2.1 21 231-252 1-21 (26)
83 smart00367 LRR_CC Leucine-rich 87.5 0.28 6E-06 27.2 0.9 19 540-558 1-19 (26)
84 PF13516 LRR_6: Leucine Rich r 71.7 1.5 3.2E-05 23.6 0.3 10 234-243 4-13 (24)
85 smart00364 LRR_BAC Leucine-ric 65.3 4.3 9.3E-05 22.4 1.2 16 233-249 3-18 (26)
86 smart00365 LRR_SD22 Leucine-ri 53.5 12 0.00025 20.8 1.7 12 256-267 2-13 (26)
87 smart00368 LRR_RI Leucine rich 45.8 17 0.00038 20.4 1.7 11 233-243 3-13 (28)
88 KOG4308 LRR-containing protein 35.9 3.2 7E-05 42.7 -4.1 126 166-293 165-303 (478)
89 KOG4308 LRR-containing protein 31.6 3.4 7.4E-05 42.5 -4.7 90 175-267 89-183 (478)
90 PF14162 YozD: YozD-like prote 29.6 70 0.0015 20.9 2.6 23 81-103 9-31 (57)
91 PF13730 HTH_36: Helix-turn-he 23.7 2.2E+02 0.0048 18.7 5.0 51 38-99 2-55 (55)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-49 Score=420.28 Aligned_cols=473 Identities=28% Similarity=0.405 Sum_probs=316.1
Q ss_pred CCCCCCHHHHHHHhcccccc----ccccCCCchHHHHhhhccCChhhhhHhhhccCCCCCCccCHHHHHHHHHHcCCccC
Q 007979 1 MRSKKTEEEWCRILNNDLWK----IEEIEKGVLSPLLLSYNDLPSRVKRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSA 76 (582)
Q Consensus 1 l~~~~~~~~W~~~l~~~~~~----~~~~~~~i~~~L~lSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~ 76 (582)
|+.|++.++|+.+.+...+. .++.++.|+++|++|||+||+++|.||||||+|||||+|++++||.+|+||||+.+
T Consensus 366 ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~ 445 (889)
T KOG4658|consen 366 LACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDP 445 (889)
T ss_pred hcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCc
Confidence 68999999999999875444 23345789999999999999999999999999999999999999999999999988
Q ss_pred C-CcccHHHHHHHHHHHHHhccCccccccCCCCCeeEEEeCHHHHHHHHHhhh-----ccceeeecC-CCCCCCcccCCC
Q 007979 77 E-QDEEMDIIGEEYFNILATRSFFQEFKRDHDNLIVACKMHDIVHDFAQFVSQ-----NECSSMEIN-GSKEPNAINSLD 149 (582)
Q Consensus 77 ~-~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~a~~i~~-----~~~~~~~~~-~~~~~~~~~~~~ 149 (582)
. .+..+++.|+.|+.+|+++++++..... +...+|+|||+|||||.++|. ++..+.... +....+.. .-+
T Consensus 446 ~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~-~~~ 522 (889)
T KOG4658|consen 446 LDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV-KSW 522 (889)
T ss_pred cccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc-cch
Confidence 4 4688999999999999999999987754 566789999999999999999 565544432 22222122 225
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
...|++++.++.+...+... .+++|++|.+.+|.. ....+.+.+|..++.||||||++ |..+..+|+.|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~-----~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSG-----NSSLSKLPSSIG 592 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCC-----CCccCcCChHHh
Confidence 78899999999887765554 556899999999852 12334567789999999999999 668889999999
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCcc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTL 309 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 309 (582)
.|.+||||+++++. +..+|..+++|++|++|++..+..+..+|.....|.+||+|.+.... ...-...++.+.+|++|
T Consensus 593 ~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccch
Confidence 99999999999999 89999999999999999999988777777777779999999987653 11111223334444444
Q ss_pred CeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHH
Q 007979 310 DEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLL 389 (582)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 389 (582)
....+...+ ...+..+..+..|..+..... +..+ .....
T Consensus 671 ~~ls~~~~s------~~~~e~l~~~~~L~~~~~~l~------------------------~~~~-----------~~~~~ 709 (889)
T KOG4658|consen 671 ENLSITISS------VLLLEDLLGMTRLRSLLQSLS------------------------IEGC-----------SKRTL 709 (889)
T ss_pred hhheeecch------hHhHhhhhhhHHHHHHhHhhh------------------------hccc-----------cccee
Confidence 433332211 001111211211111100000 0000 00111
Q ss_pred HhhCCCCCCCcEEEEeeEeCCCcCCchhh-----c-CcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 390 LEALQPPLNLKELFIGSYGGNTVSPSWMM-----S-LTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~-l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
...+..+.+|+.|.+.++.+......|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+...
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 22333455566666665555432111211 1 44555555555655555555555566666666666655554322
Q ss_pred ccCCCCCCCCCCCCCcccccCcccccc-cccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCC
Q 007979 464 ILGIESDHHDSSSSSSVIIAFPKLQSL-FIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTT 542 (582)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~ 542 (582)
.-.... ....+..|++++.+ .+.+.+.+.++..... .++.|+.+.+..||++..+|.
T Consensus 790 ~k~~~~-------l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l--------~~~~l~~~~ve~~p~l~~~P~------- 847 (889)
T KOG4658|consen 790 LKALLE-------LKELILPFNKLEGLRMLCSLGGLPQLYWLPL--------SFLKLEELIVEECPKLGKLPL------- 847 (889)
T ss_pred HHHhhh-------cccEEecccccccceeeecCCCCceeEeccc--------CccchhheehhcCcccccCcc-------
Confidence 111000 00012355566666 4665555555543222 456688888888888777663
Q ss_pred cceEEEeCC
Q 007979 543 LKGLSIWGC 551 (582)
Q Consensus 543 L~~L~i~~C 551 (582)
+.++.+.+|
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 445555555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-40 Score=373.57 Aligned_cols=481 Identities=20% Similarity=0.229 Sum_probs=277.1
Q ss_pred CCCHHHHHHHhccccccccccCCCchHHHHhhhccCCh-hhhhHhhhccCCCCCCccCHHHHHHHHHHcCCccCCCcccH
Q 007979 4 KKTEEEWCRILNNDLWKIEEIEKGVLSPLLLSYNDLPS-RVKRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSAEQDEEM 82 (582)
Q Consensus 4 ~~~~~~W~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~-~~k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~ 82 (582)
.++.++|++++++..+.. +.+|+++|++|||+|++ ..|.||+||||||+++.+ +.+..|+|.+.+..
T Consensus 401 ~k~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~------ 468 (1153)
T PLN03210 401 GRDKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV------ 468 (1153)
T ss_pred CCCHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc------
Confidence 357899999998854432 35699999999999987 599999999999998754 45777888765532
Q ss_pred HHHHHHHHHHHHhccCccccccCCCCCeeEEEeCHHHHHHHHHhhhccce-------eeecCCCCCCCcccCCCcceeEE
Q 007979 83 DIIGEEYFNILATRSFFQEFKRDHDNLIVACKMHDIVHDFAQFVSQNECS-------SMEINGSKEPNAINSLDEKVCHL 155 (582)
Q Consensus 83 ~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~a~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l 155 (582)
+..++.|++++|++.... .++|||++|+||+++++++.. ..........-........++.+
T Consensus 469 ----~~~l~~L~~ksLi~~~~~-------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i 537 (1153)
T PLN03210 469 ----NIGLKNLVDKSLIHVRED-------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGI 537 (1153)
T ss_pred ----hhChHHHHhcCCEEEcCC-------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEE
Confidence 234889999999986432 379999999999999987631 10000000000001113455666
Q ss_pred EEEecCCCcc---cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccC-CceeEEEeCCCcccc--------------
Q 007979 156 MLVIGLGASF---PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKL-TSLRALDIGNWSATL-------------- 217 (582)
Q Consensus 156 ~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~-------------- 217 (582)
.+......++ +.+|.+|++|+.|.+..+..+...-....+|..|..+ .+||.|++.++.+..
T Consensus 538 ~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~ 617 (1153)
T PLN03210 538 TLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQ 617 (1153)
T ss_pred EeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEE
Confidence 5554433321 3456778888888776553211000000122223332 235555555411000
Q ss_pred --ccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCc
Q 007979 218 --CSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGH 295 (582)
Q Consensus 218 --~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~ 295 (582)
.+.+..+|..+..+++|++|+++++..++.+| .++.+++|++|++++|..+..+|..++++++|+.|++++|..+..
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 01334444445555555555555544444454 344555555555555555555555555555555555555555555
Q ss_pred CCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeec
Q 007979 296 MPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVK 375 (582)
Q Consensus 296 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 375 (582)
+|..+ .+++|+.|++.+|.....+ +. . ..+|+.+.+.... +..++ ....+++|..|.+.....
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~----p~---~---~~nL~~L~L~~n~-i~~lP-----~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSF----PD---I---STNISWLDLDETA-IEEFP-----SNLRLENLDELILCEMKS 759 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCcccc----cc---c---cCCcCeeecCCCc-ccccc-----ccccccccccccccccch
Confidence 55443 3455555554443221100 00 0 1112222221111 00000 001234444444432110
Q ss_pred CCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccccc
Q 007979 376 ESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMK 455 (582)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 455 (582)
.. ...............+++|+.|++++|.....+|.+++++++|+.|++++|..++.+|....+++|+.|++++|.
T Consensus 760 ~~---l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 760 EK---LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred hh---ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 00 000000000111223568899999988765555888999999999999999888888876678899999999998
Q ss_pred CceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCc
Q 007979 456 SVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPD 535 (582)
Q Consensus 456 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~ 535 (582)
.++.+|. ..++|+.|+|.++ .++.+|.. +..+++|+.|++.+|++++.+|.
T Consensus 837 ~L~~~p~--------------------~~~nL~~L~Ls~n-~i~~iP~s--------i~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 837 RLRTFPD--------------------ISTNISDLNLSRT-GIEEVPWW--------IEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ccccccc--------------------cccccCEeECCCC-CCccChHH--------HhcCCCCCEEECCCCCCcCccCc
Confidence 7776653 2356777777765 56555532 34788888888888888888887
Q ss_pred CCCCCCCcceEEEeCCcchHHH
Q 007979 536 HIHQTTTLKGLSIWGCDLLEER 557 (582)
Q Consensus 536 ~~~~l~~L~~L~i~~C~~l~~~ 557 (582)
.+..+++|+.+++.+|++|+..
T Consensus 888 ~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccccCCCeeecCCCcccccc
Confidence 7777888888888888877643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=9.7e-27 Score=261.82 Aligned_cols=355 Identities=19% Similarity=0.197 Sum_probs=175.6
Q ss_pred ceeEEEEEecCCC-cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 151 KVCHLMLVIGLGA-SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 151 ~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
.++.+.+..+... ..+..+..+++|++|++++|.+.. .+++..+..+++||+|+|++|++.+ .+|. +
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~-----~ip~~~~~~l~~L~~L~Ls~n~l~~-----~~p~--~ 137 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG-----PIPDDIFTTSSSLRYLNLSNNNFTG-----SIPR--G 137 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC-----cCChHHhccCCCCCEEECcCCcccc-----ccCc--c
Confidence 4566666555432 345566777777777777776532 2234445577777777777754432 2222 3
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCcc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTL 309 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 309 (582)
.+++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 35555555555555444555555555555555555555444455555555555555555555444555555555555555
Q ss_pred CeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCC---------
Q 007979 310 DEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGR--------- 380 (582)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------- 380 (582)
++..+.... ..+..+..+++|+.|....+...+.++. .+..+++|+.|.+..+.......
T Consensus 218 ~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 218 YLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLTGPIPS-------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred ECcCCccCC----cCChhHhcCCCCCEEECcCceeccccCh-------hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 544332211 1122222233322222222211111111 23334444444444332110000
Q ss_pred -----CccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccc
Q 007979 381 -----RKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDM 454 (582)
Q Consensus 381 -----~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~ 454 (582)
..+......+..+..+++|+.|++++|.+....|.++..+++|+.|++++|...+.+|. ++.+++|+.|++++|
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 00000011222333444555555555544433344455555555555555544443333 444455555555544
Q ss_pred cCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCC
Q 007979 455 KSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP 534 (582)
Q Consensus 455 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp 534 (582)
.....+|..+ ..+++|+.|.+.+++-...++. .+..+++|+.|++.+|.....+|
T Consensus 367 ~l~~~~p~~~-----------------~~~~~L~~L~l~~n~l~~~~p~--------~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 367 NLTGEIPEGL-----------------CSSGNLFKLILFSNSLEGEIPK--------SLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred eeEeeCChhH-----------------hCcCCCCEEECcCCEecccCCH--------HHhCCCCCCEEECcCCEeeeECC
Confidence 4222232221 2345666666666532112211 24478889999998877655778
Q ss_pred cCCCCCCCcceEEEeCCcc
Q 007979 535 DHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 535 ~~~~~l~~L~~L~i~~C~~ 553 (582)
..+..+++|+.|++++|.-
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred hhHhcCCCCCEEECcCCcc
Confidence 7788888999999988753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=8.5e-27 Score=262.31 Aligned_cols=156 Identities=24% Similarity=0.329 Sum_probs=116.2
Q ss_pred CcceeEEEEEecCCC-cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGA-SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
...++.+.+.++... .+|..+..+++|++|++++|.+... +|..+.++++|++|++++|.+. ..+|..
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~ 207 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK------IPNSLTNLTSLEFLTLASNQLV-----GQIPRE 207 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc------CChhhhhCcCCCeeeccCCCCc-----CcCChH
Confidence 456777877777654 5577788888888888888875322 4555788888888888884433 256777
Q ss_pred ccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCC
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLR 307 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 307 (582)
++++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..+..+++|+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 88888888888888876667787888888888888888775566777788888888888887766667777777777777
Q ss_pred ccCeeeec
Q 007979 308 TLDEFHVS 315 (582)
Q Consensus 308 ~L~~~~~~ 315 (582)
.|++..+.
T Consensus 288 ~L~Ls~n~ 295 (968)
T PLN00113 288 SLDLSDNS 295 (968)
T ss_pred EEECcCCe
Confidence 77765543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=6.8e-26 Score=219.15 Aligned_cols=340 Identities=24% Similarity=0.239 Sum_probs=219.7
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
..++.+.+.......+|..++.+.+|..|.+.+|++.. +..-+..++.||.++++.|++.. ..+|..|-
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-------vhGELs~Lp~LRsv~~R~N~LKn----sGiP~diF 100 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-------VHGELSDLPRLRSVIVRDNNLKN----SGIPTDIF 100 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-------hhhhhccchhhHHHhhhcccccc----CCCCchhc
Confidence 34555555555566667777777777777777776432 12225667777777777755432 24677777
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccccc-ccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGI-GKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
+|..|.+|||++|. +.+.|..+...+++-+|+|++|. +..+|..+ .+|+.|-+|++++| .+..+|+.+.++..|++
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence 77788888888877 77777777777788888888776 77777654 57777777777777 45677777777777887
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecC----CCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccc
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLG----NVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNE 384 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~----~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (582)
|.++++... ..-+..|++++.|++++.+... ++|. ++..+.+|..++++.+..
T Consensus 178 L~Ls~NPL~-------hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------sld~l~NL~dvDlS~N~L--------- 234 (1255)
T KOG0444|consen 178 LKLSNNPLN-------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------SLDDLHNLRDVDLSENNL--------- 234 (1255)
T ss_pred hhcCCChhh-------HHHHhcCccchhhhhhhcccccchhhcCCC-------chhhhhhhhhccccccCC---------
Confidence 776654332 2334555666666655554422 1221 333444555555543322
Q ss_pred hHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccc
Q 007979 385 HDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEI 464 (582)
Q Consensus 385 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 464 (582)
..+++.+-.+.+|+.|+|++|.++.+ ....+...+|+.|+++.|+.......+..+++|+.|.+.+|+ ++--
T Consensus 235 --p~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~Fe---- 306 (1255)
T KOG0444|consen 235 --PIVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFE---- 306 (1255)
T ss_pred --CcchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cccc----
Confidence 23455555666677777777766665 444555666777777766443332236667777777776665 2210
Q ss_pred cCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcc
Q 007979 465 LGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLK 544 (582)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~ 544 (582)
+..++++.+..|+.+...++ +|+-.|.+ ++.++.|+.|.+.. +.|..+|+.+.-++-|+
T Consensus 307 -----------GiPSGIGKL~~Levf~aanN-~LElVPEg--------lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 307 -----------GIPSGIGKLIQLEVFHAANN-KLELVPEG--------LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLK 365 (1255)
T ss_pred -----------CCccchhhhhhhHHHHhhcc-ccccCchh--------hhhhHHHHHhcccc-cceeechhhhhhcCCcc
Confidence 11122456677777777766 56655543 55899999999975 78889999999999999
Q ss_pred eEEEeCCcchH
Q 007979 545 GLSIWGCDLLE 555 (582)
Q Consensus 545 ~L~i~~C~~l~ 555 (582)
.|+++..|+|-
T Consensus 366 vLDlreNpnLV 376 (1255)
T KOG0444|consen 366 VLDLRENPNLV 376 (1255)
T ss_pred eeeccCCcCcc
Confidence 99999999874
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6e-23 Score=231.08 Aligned_cols=342 Identities=23% Similarity=0.266 Sum_probs=247.3
Q ss_pred CCcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
++..+|.+.+..+....+|..+ ...+|+.|++.++.+.. ++..+..+++|++|+|++ +..+..+|.
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~-----~~~l~~ip~- 652 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRG-----SKNLKEIPD- 652 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc-------cccccccCCCCCEEECCC-----CCCcCcCCc-
Confidence 4567888888877777777776 57899999999987532 344477899999999998 556777774
Q ss_pred ccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCC
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLR 307 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 307 (582)
++.+++|++|++++|..+..+|..++++++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.. .++|+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 8889999999999998899999999999999999999999999999876 7999999999999887777753 45777
Q ss_pred ccCeeeecCCCCcCCCCccccccccCCCccCeeeeeec---CCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccc
Q 007979 308 TLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRL---GNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNE 384 (582)
Q Consensus 308 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~---~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (582)
.|++..+.... .+..+ .+++|..|....+... +.+.... .......+.|+.|.++.+...
T Consensus 729 ~L~L~~n~i~~-----lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~---~~~~~~~~sL~~L~Ls~n~~l-------- 791 (1153)
T PLN03210 729 WLDLDETAIEE-----FPSNL-RLENLDELILCEMKSEKLWERVQPLT---PLMTMLSPSLTRLFLSDIPSL-------- 791 (1153)
T ss_pred eeecCCCcccc-----ccccc-cccccccccccccchhhccccccccc---hhhhhccccchheeCCCCCCc--------
Confidence 77765543222 11111 2333443332221110 0010000 001123457888888654321
Q ss_pred hHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccc
Q 007979 385 HDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEI 464 (582)
Q Consensus 385 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~ 464 (582)
..++..+..+++|+.|++++|.....+|..+ .+++|+.|++++|..+..+|.+ .++|+.|+|+++. ++.+|..
T Consensus 792 --~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~s- 864 (1153)
T PLN03210 792 --VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPWW- 864 (1153)
T ss_pred --cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChHH-
Confidence 2345667889999999999986554447765 7899999999999888877764 4689999999876 7777764
Q ss_pred cCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcC--------
Q 007979 465 LGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDH-------- 536 (582)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~-------- 536 (582)
+..+++|++|.+.+|++|+.++.. +..+++|+.+++.+|.+|+.++..
T Consensus 865 ----------------i~~l~~L~~L~L~~C~~L~~l~~~--------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~ 920 (1153)
T PLN03210 865 ----------------IEKFSNLSFLDMNGCNNLQRVSLN--------ISKLKHLETVDFSDCGALTEASWNGSPSEVAM 920 (1153)
T ss_pred ----------------HhcCCCCCEEECCCCCCcCccCcc--------cccccCCCeeecCCCcccccccCCCCchhhhh
Confidence 347899999999999999988753 237899999999999999865421
Q ss_pred -----CCCCCCcceEEEeCCcchH
Q 007979 537 -----IHQTTTLKGLSIWGCDLLE 555 (582)
Q Consensus 537 -----~~~l~~L~~L~i~~C~~l~ 555 (582)
...+++...+.+.+|.++.
T Consensus 921 ~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 921 ATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hcccccccCCchhccccccccCCC
Confidence 0123333555677887765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=7.2e-25 Score=212.09 Aligned_cols=337 Identities=24% Similarity=0.245 Sum_probs=253.2
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
..++.|+++.++....+...+..++.||++++..|.+..+. ++++ +..+..|.+|||++ +.+.+.|..+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG----iP~d-iF~l~dLt~lDLSh------NqL~EvP~~L 122 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG----IPTD-IFRLKDLTILDLSH------NQLREVPTNL 122 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC----CCch-hcccccceeeecch------hhhhhcchhh
Confidence 45678888888888888888999999999999999987653 2444 77899999999999 3777899999
Q ss_pred cccCCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCC
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLR 307 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 307 (582)
..-+++-+|+|++|. |+.+|.. +-+|..|-.|||++|+ +..+|+.+.+|.+|++|.+++|.....--..+..+++|+
T Consensus 123 E~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 999999999999999 9999966 6799999999999998 999999999999999999999854322122334567777
Q ss_pred ccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHH
Q 007979 308 TLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQ 387 (582)
Q Consensus 308 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 387 (582)
+|.+++.... ....+.++..+.+|..+....+. ++..++ .+-+..+|+.|.++.+....
T Consensus 201 vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS~N~----Lp~vPe----cly~l~~LrrLNLS~N~ite---------- 259 (1255)
T KOG0444|consen 201 VLHMSNTQRT---LDNIPTSLDDLHNLRDVDLSENN----LPIVPE----CLYKLRNLRRLNLSGNKITE---------- 259 (1255)
T ss_pred hhhcccccch---hhcCCCchhhhhhhhhccccccC----CCcchH----HHhhhhhhheeccCcCceee----------
Confidence 7776654332 22245566666666655544432 222222 34566788888887654321
Q ss_pred HHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCC-CcCCC-CCCCCCcceeecccccCceEeCcccc
Q 007979 388 LLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENC-EQLPP-LGKLPSLEKLYISDMKSVKRVGNEIL 465 (582)
Q Consensus 388 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 465 (582)
+-.....-.+|++|+++.|.++.+ |+.+..+++|+.|.+.+|... +-+|+ +|.+.+|+++...+|. ++-+|....
T Consensus 260 -L~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglc 336 (1255)
T KOG0444|consen 260 -LNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLC 336 (1255)
T ss_pred -eeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhh
Confidence 111112235799999999999988 999999999999999998753 44565 9999999999998876 888887643
Q ss_pred CCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcce
Q 007979 466 GIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKG 545 (582)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~ 545 (582)
.|++|+.|.|..+ .|..+|.+ |.-++.|+.|++...++|..-|..-..-++|+.
T Consensus 337 -----------------RC~kL~kL~L~~N-rLiTLPea--------IHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 337 -----------------RCVKLQKLKLDHN-RLITLPEA--------IHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred -----------------hhHHHHHhccccc-ceeechhh--------hhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 7899999999876 67666654 447899999999999999876533222244554
Q ss_pred EEE
Q 007979 546 LSI 548 (582)
Q Consensus 546 L~i 548 (582)
-+|
T Consensus 391 YNI 393 (1255)
T KOG0444|consen 391 YNI 393 (1255)
T ss_pred eec
Confidence 444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-23 Score=198.55 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=110.1
Q ss_pred HhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCC
Q 007979 355 KRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENC 434 (582)
Q Consensus 355 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 434 (582)
....+-++..|+.|+++++... ..-.+.+..+++|+.|+|+.|.+..+.+..+..+..|++|+|++|...
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~----------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQ----------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred hcccccccchhhhhccchhhhh----------eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 3345556677777777765432 222456667788888888888888876777778888888888888543
Q ss_pred CcCC-CCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCC
Q 007979 435 EQLP-PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFI 513 (582)
Q Consensus 435 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 513 (582)
..-. .+..+.+|++|+|++|..--.+.+.. ....++|+|++|.+.++ +++.++...+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa--------------~~f~gl~~LrkL~l~gN-qlk~I~krAf------- 412 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAA--------------VAFNGLPSLRKLRLTGN-QLKSIPKRAF------- 412 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecch--------------hhhccchhhhheeecCc-eeeecchhhh-------
Confidence 3222 26778888888888887333332211 11347899999999988 8888876543
Q ss_pred cccccccceecccccccccC-CcCCCCCCCcceEEEe
Q 007979 514 DIMPRLSALAIAVCPKLKAL-PDHIHQTTTLKGLSIW 549 (582)
Q Consensus 514 ~~~~~L~~L~l~~C~~L~~l-p~~~~~l~~L~~L~i~ 549 (582)
..+++||.|++.+ +-+.+| |..+..+ .|++|.+.
T Consensus 413 sgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 413 SGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ccCcccceecCCC-Ccceeecccccccc-hhhhhhhc
Confidence 3889999999988 446665 4566666 88888764
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.8e-23 Score=195.99 Aligned_cols=347 Identities=16% Similarity=0.154 Sum_probs=249.8
Q ss_pred CCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-c
Q 007979 148 LDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-P 225 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p 225 (582)
.+...+.+.+.++....+ +..|.++++|+.+.+..|.+.. +|.+.....+|+.|+|.+|.++ ++ .
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-------IP~f~~~sghl~~L~L~~N~I~------sv~s 142 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-------IPRFGHESGHLEKLDLRHNLIS------SVTS 142 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-------cccccccccceeEEeeeccccc------cccH
Confidence 366677778877776654 3456889999999999997533 5664455566999999985543 33 2
Q ss_pred ccccccCCCCEEecCCCCCccccch-hhhccCCccEEecCCCcCcccc-ccccccCCCCceeecCCccCCCcCCccCCCC
Q 007979 226 RNIEKLVHLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLKAL-PQGIGKLINMKHLLNERTDSLGHMPAGIARL 303 (582)
Q Consensus 226 ~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 303 (582)
+.+..++.||.|||+.|. +..+|. ++..=.++++|+|++|+ +..+ -..+..+.+|..|.+++|......+..+.++
T Consensus 143 e~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 567788899999999988 777763 46666889999999988 4444 3557788899999999986544444556779
Q ss_pred CCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCcc
Q 007979 304 PSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKN 383 (582)
Q Consensus 304 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 383 (582)
+.|+.|++..+.... ..+..+..|.+|++|+.-.+... .+....+-.+.+++.|++..+...
T Consensus 221 ~~L~~LdLnrN~iri----ve~ltFqgL~Sl~nlklqrN~I~-------kL~DG~Fy~l~kme~l~L~~N~l~------- 282 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRI----VEGLTFQGLPSLQNLKLQRNDIS-------KLDDGAFYGLEKMEHLNLETNRLQ------- 282 (873)
T ss_pred chhhhhhccccceee----ehhhhhcCchhhhhhhhhhcCcc-------cccCcceeeecccceeecccchhh-------
Confidence 999999876654321 12445666777776664433211 111224556788888888765432
Q ss_pred chHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCc
Q 007979 384 EHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGN 462 (582)
Q Consensus 384 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~ 462 (582)
..--.++..+..|+.|+++.|.+..+-++.+...++|++|+|+.|....--+. +..|..|++|.|+.|. +..+-+
T Consensus 283 ---~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e 358 (873)
T KOG4194|consen 283 ---AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAE 358 (873)
T ss_pred ---hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHh
Confidence 12223566788999999999999988888889999999999999976654333 8889999999999987 777755
Q ss_pred cccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCC-cCCCCCC
Q 007979 463 EILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP-DHIHQTT 541 (582)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp-~~~~~l~ 541 (582)
..| .++.+|++|+|+++. + +|..+.... .+..+++|++|.+.| +++++|| ..+..+.
T Consensus 359 ~af----------------~~lssL~~LdLr~N~-l-s~~IEDaa~---~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 359 GAF----------------VGLSSLHKLDLRSNE-L-SWCIEDAAV---AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLE 416 (873)
T ss_pred hHH----------------HHhhhhhhhcCcCCe-E-EEEEecchh---hhccchhhhheeecC-ceeeecchhhhccCc
Confidence 443 378899999999872 2 233222111 244799999999999 7899999 4677899
Q ss_pred CcceEEEeCCcc
Q 007979 542 TLKGLSIWGCDL 553 (582)
Q Consensus 542 ~L~~L~i~~C~~ 553 (582)
+|++|++-+.+-
T Consensus 417 ~LE~LdL~~Nai 428 (873)
T KOG4194|consen 417 ALEHLDLGDNAI 428 (873)
T ss_pred ccceecCCCCcc
Confidence 999999988764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=3e-22 Score=184.32 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=82.4
Q ss_pred CCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccc
Q 007979 410 NTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQ 488 (582)
Q Consensus 410 ~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 488 (582)
..+.|..+..+++|+.|++++|. +.++|. ++.+..|+.|+++.|. ...+|.-.. ....|+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y-----------------~lq~lE 484 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLY-----------------ELQTLE 484 (565)
T ss_pred cccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccc-cccchHHHh-----------------hHHHHH
Confidence 33436667788888888888774 444444 7777788888888774 555554321 223344
Q ss_pred cccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 489 SLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 489 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
.+-.+++ ++.+++... +..|.+|..|++.+ +.+..+|..+.++++|++|+++|.|-
T Consensus 485 tllas~n-qi~~vd~~~-------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 485 TLLASNN-QIGSVDPSG-------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHhccc-cccccChHH-------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 4444444 666665431 55899999999998 77999999999999999999999985
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.8e-20 Score=172.79 Aligned_cols=331 Identities=23% Similarity=0.248 Sum_probs=221.8
Q ss_pred eeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccccc
Q 007979 152 VCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKL 231 (582)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 231 (582)
..-+.++++.....|++++.+..++.++.++|.+ .+ +|..+.++..|+.|+.++ ..+..+|++++.+
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l------s~-lp~~i~s~~~l~~l~~s~------n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL------SE-LPEQIGSLISLVKLDCSS------NELKELPDSIGRL 136 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchH------hh-ccHHHhhhhhhhhhhccc------cceeecCchHHHH
Confidence 3344445555556677777888888888887763 22 455577778888888887 2566778888888
Q ss_pred CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 232 VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
..|..|+..+|. +.++|+.+.++.+|..|++.+|. ++.+|+..-.|+.|++|+...| .++.+|..++.+.+|..|++
T Consensus 137 ~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 137 LDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHh
Confidence 888888888877 77888888888888888888876 6777766666888888888776 66778888888887777775
Q ss_pred eeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh
Q 007979 312 FHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE 391 (582)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 391 (582)
..+.... +.+ +.+|..|+.+++..+ ..+.++.
T Consensus 214 ~~Nki~~---------lPe----------------------------f~gcs~L~Elh~g~N-----------~i~~lpa 245 (565)
T KOG0472|consen 214 RRNKIRF---------LPE----------------------------FPGCSLLKELHVGEN-----------QIEMLPA 245 (565)
T ss_pred hhccccc---------CCC----------------------------CCccHHHHHHHhccc-----------HHHhhHH
Confidence 4433221 111 122333333333211 1223333
Q ss_pred -hCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCC-
Q 007979 392 -ALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIES- 469 (582)
Q Consensus 392 -~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~- 469 (582)
....++++..|++..|.+... |..+..+.+|.+|++++|....-.+.+|++ .|+.|.+.+|+ ++.+-.++...+.
T Consensus 246 e~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQ 322 (565)
T ss_pred HHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHH
Confidence 344778999999999999999 999999999999999999888777789999 99999999998 6555433322111
Q ss_pred -----------------CCCCCCCCCc-------ccccCcccccccccccccccccccCccc------------------
Q 007979 470 -----------------DHHDSSSSSS-------VIIAFPKLQSLFIEDLPELEEWDYGITR------------------ 507 (582)
Q Consensus 470 -----------------~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~L~~l~~~~~~------------------ 507 (582)
.........+ ......+.+.|.+++- +++.+|...+.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHh
Confidence 0000000111 1112235666666543 44444421100
Q ss_pred ----------------------CCCC--CCcccccccceecccccccccCCcCCCCCCCcceEEEeCC
Q 007979 508 ----------------------TGHP--FIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 508 ----------------------~~~~--~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C 551 (582)
.+++ .++.+++|..|++++ +-+..+|..+..+..|+.|+++..
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 1111 267889999999998 668899988888899999999864
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=1.4e-19 Score=183.71 Aligned_cols=135 Identities=24% Similarity=0.279 Sum_probs=75.3
Q ss_pred eeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccccc
Q 007979 152 VCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKL 231 (582)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 231 (582)
+..+.+.++....+|..+..+.+|+.|.++.|.+ .. .|.....+.+|++|.|.+ +.+..+|.++..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i------~~-vp~s~~~~~~l~~lnL~~------n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI------RS-VPSSCSNMRNLQYLNLKN------NRLQSLPASISEL 113 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH------hh-Cchhhhhhhcchhheecc------chhhcCchhHHhh
Confidence 4555555556666666666666666666666652 22 234455666666666664 3555566666666
Q ss_pred CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCC
Q 007979 232 VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPS 305 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 305 (582)
++|++|+++.|. .+.+|..+..+..+..+..++|..+..++. .. .+++++..+.....++.++..++.
T Consensus 114 knl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 114 KNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe
Confidence 666666666666 555666666666666666666533333322 11 455555555555555555555444
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=5e-19 Score=179.70 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=50.9
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCc----------------------CCC-CCCCCCcceeec
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQ----------------------LPP-LGKLPSLEKLYI 451 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~----------------------l~~-l~~l~~L~~L~L 451 (582)
.+.+|++++++.+.+..+ |+|+..+.+|+.+...+|..... +|. +..+.+|++|+|
T Consensus 239 ~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 456788888888888877 78888888888888877654221 233 556889999999
Q ss_pred ccccCceEeCcccc
Q 007979 452 SDMKSVKRVGNEIL 465 (582)
Q Consensus 452 ~~~~~l~~~~~~~~ 465 (582)
..|. +..+|..++
T Consensus 318 ~~N~-L~~lp~~~l 330 (1081)
T KOG0618|consen 318 QSNN-LPSLPDNFL 330 (1081)
T ss_pred hhcc-ccccchHHH
Confidence 8887 778877654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6.7e-15 Score=154.41 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhh
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 252 (582)
..-..|+++++.+.. +|..+. .+|+.|++.+| .+..+|.. +++|++|++++|. +..+|..
T Consensus 201 ~~~~~LdLs~~~Lts-------LP~~l~--~~L~~L~L~~N------~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l- 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-------LPDCLP--AHITTLVIPDN------NLTSLPAL---PPELRTLEVSGNQ-LTSLPVL- 260 (788)
T ss_pred CCCcEEEcCCCCCCc-------CCcchh--cCCCEEEccCC------cCCCCCCC---CCCCcEEEecCCc-cCcccCc-
Confidence 345567777776532 222232 36777777773 44445542 4677777777776 6666642
Q ss_pred hccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeee
Q 007979 253 CELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 314 (582)
.++|+.|++++|. +..+|.. ..+|+.|++.+|. +..+|.. +++|+.|++.++
T Consensus 261 --p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N 312 (788)
T PRK15387 261 --PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN 312 (788)
T ss_pred --ccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC
Confidence 3567777777776 5566652 2456677777763 3455542 356666665443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.7e-14 Score=152.36 Aligned_cols=114 Identities=17% Similarity=0.280 Sum_probs=64.4
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhh
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLC 253 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 253 (582)
+...|.++++.+.. +|..+ .++|+.|+|++| .+..+|..+. .+|++|++++|. +..+|..+.
T Consensus 179 ~~~~L~L~~~~Lts-------LP~~I--p~~L~~L~Ls~N------~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTT-------IPACI--PEQITTLILDNN------ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCc-------CCccc--ccCCcEEEecCC------CCCcCChhhc--cCCCEEECCCCc-cccCChhhh
Confidence 45566666655432 12211 235677777762 4445565443 467777777776 566665543
Q ss_pred ccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeee
Q 007979 254 ELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFH 313 (582)
Q Consensus 254 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 313 (582)
.+|+.|+|++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++.+
T Consensus 241 --~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 241 --DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred --ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCC
Confidence 367777777766 556666553 467777776653 345565442 3566665443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-16 Score=130.36 Aligned_cols=162 Identities=25% Similarity=0.324 Sum_probs=101.3
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
-.+.+.+.|.|++|+ +..+|..|..+.+|+.|++.+|+ +.++|..++.|++|++|++.-| .+..+|.+++.++.|+.
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 355666677777777 67777777777777777777776 7777777777777777777655 45667777777777777
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHH
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQL 388 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (582)
|++.++...+..
T Consensus 107 ldltynnl~e~~-------------------------------------------------------------------- 118 (264)
T KOG0617|consen 107 LDLTYNNLNENS-------------------------------------------------------------------- 118 (264)
T ss_pred hhcccccccccc--------------------------------------------------------------------
Confidence 776554333210
Q ss_pred HHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 389 LLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 389 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
++..+..+..|+.|+++.|.+..+ |..++.+++|+.|.+.+|........++.++.|++|.+.+|. ++.+|.+
T Consensus 119 lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppe 191 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPE 191 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChh
Confidence 011111223344455555555444 666666666666666666555444446666666666666665 5555544
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=8.8e-15 Score=156.96 Aligned_cols=309 Identities=26% Similarity=0.251 Sum_probs=198.0
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc-cccccCCCCEEecCCCCCcccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR-NIEKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~l 248 (582)
......|...+.+|.+.. .+. -..++.|++|-+.+|.. .+..++. .+..++.|++|||++|...+.+
T Consensus 520 ~~~~~~rr~s~~~~~~~~-------~~~-~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-------IAG-SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred cchhheeEEEEeccchhh-------ccC-CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 345678888888887422 121 13455799999888321 1445544 3778999999999999989999
Q ss_pred chhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCcccc
Q 007979 249 PETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRL 328 (582)
Q Consensus 249 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 328 (582)
|.+|++|.+||+|+++++. +..+|.++++|.+|.+|++..+..+..+|.....|++|++|.+....... ....+
T Consensus 588 P~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~l 661 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLLL 661 (889)
T ss_pred ChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chhhH
Confidence 9999999999999999987 88999999999999999999987777776666679999999987654111 13455
Q ss_pred ccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCC----CcEEEE
Q 007979 329 ESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLN----LKELFI 404 (582)
Q Consensus 329 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----L~~L~l 404 (582)
.++.+|++|+.+.+..... .+.+.+..... .+.+.+
T Consensus 662 ~el~~Le~L~~ls~~~~s~----------------------------------------~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSV----------------------------------------LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred Hhhhcccchhhheeecchh----------------------------------------HhHhhhhhhHHHHHHhHhhhh
Confidence 6666666666655533211 00001111111 112222
Q ss_pred eeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC-C-----CCC-CCCcceeecccccCceEeCccccCCCCCCCCCCCC
Q 007979 405 GSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP-P-----LGK-LPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSS 477 (582)
Q Consensus 405 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~-----l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (582)
.++..... +..+..+.+|+.|.+.+|...+... . ... ++++..+.+.+|..++.+..
T Consensus 702 ~~~~~~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~--------------- 765 (889)
T KOG4658|consen 702 EGCSKRTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW--------------- 765 (889)
T ss_pred ccccccee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---------------
Confidence 22333333 6667789999999999998764322 1 111 55666677777765544422
Q ss_pred CcccccCcccccccccccccccccccCcccCC-CC-CCcccccccce-ecccccccccCCcCCCCCCCcceEEEeCCcch
Q 007979 478 SSVIIAFPKLQSLFIEDLPELEEWDYGITRTG-HP-FIDIMPRLSAL-AIAVCPKLKALPDHIHQTTTLKGLSIWGCDLL 554 (582)
Q Consensus 478 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~-~~-~~~~~~~L~~L-~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~l 554 (582)
....|+|+.|.+..|+.++++.+...... .. .+..+.+++.+ .+.+-+.+..+-..-...+.|+.+.+..||++
T Consensus 766 ---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l 842 (889)
T KOG4658|consen 766 ---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKL 842 (889)
T ss_pred ---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccc
Confidence 23678999999999988877653322110 00 12245555555 34444444433211111334999999999987
Q ss_pred H
Q 007979 555 E 555 (582)
Q Consensus 555 ~ 555 (582)
.
T Consensus 843 ~ 843 (889)
T KOG4658|consen 843 G 843 (889)
T ss_pred c
Confidence 6
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.45 E-value=4.1e-15 Score=137.52 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred hCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcC-CCCCCCCCcceeecccccCceEeCcccc
Q 007979 392 ALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQL-PPLGKLPSLEKLYISDMKSVKRVGNEIL 465 (582)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 465 (582)
.+..+++|++|++++|.++.+-+.||..+..+++|.|..|+....- ..+.++..|+.|+|++|+ ++.+....|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF 342 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAF 342 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe-eEEEecccc
Confidence 4677889999999999998887889999999999999888543221 127788899999999988 777655444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=5.9e-13 Score=139.96 Aligned_cols=126 Identities=23% Similarity=0.180 Sum_probs=80.4
Q ss_pred EEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCC
Q 007979 154 HLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVH 233 (582)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~ 233 (582)
.+.+..+....+|..+. ++|+.|.+.+|.+.. +|. .+++|++|++++| .+..+|.. .++
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-------LP~---lp~~Lk~LdLs~N------~LtsLP~l---p~s 263 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSGN------QLTSLPVL---PPG 263 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-------CCC---CCCCCcEEEecCC------ccCcccCc---ccc
Confidence 44455555556666554 478888888887542 222 3577888888884 44455542 357
Q ss_pred CCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 234 LRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 234 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
|+.|++++|. +..+|... .+|+.|++++|. +..+|.. +++|+.|++++|. +..+|... .+|+.|.+.
T Consensus 264 L~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls 330 (788)
T PRK15387 264 LLELSIFSNP-LTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAY 330 (788)
T ss_pred cceeeccCCc-hhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCCc---ccccccccc
Confidence 7888888887 67777533 567788888886 6777763 4678888888874 34455422 245555543
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-15 Score=123.75 Aligned_cols=149 Identities=26% Similarity=0.354 Sum_probs=98.2
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
..+.++.+.++....+|+.+.++.+|++|++++|++ .+ +|..+++++.||.|+++- +.+..+|..+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi------e~-lp~~issl~klr~lnvgm------nrl~~lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI------EE-LPTSISSLPKLRILNVGM------NRLNILPRGFG 99 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh------hh-cChhhhhchhhhheecch------hhhhcCccccC
Confidence 445556666666666677777777777777777763 22 444467777777777765 24556677777
Q ss_pred ccCCCCEEecCCCCCcc-ccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 230 KLVHLRYLNLSSVTLIR-KLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
.++.|+.||+.+|.+.+ .+|..|..+..|+.|.|++|. .+.+|..++++++|+.|.+.+|. +-.+|.+++.++.|+.
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHH
Confidence 77777777777766332 566666667777777777765 66677777777777777777664 3456777777777777
Q ss_pred cCeee
Q 007979 309 LDEFH 313 (582)
Q Consensus 309 L~~~~ 313 (582)
|++.+
T Consensus 178 lhiqg 182 (264)
T KOG0617|consen 178 LHIQG 182 (264)
T ss_pred Hhccc
Confidence 76443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=2.8e-13 Score=143.34 Aligned_cols=249 Identities=19% Similarity=0.214 Sum_probs=159.4
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
......+.+.......+|..+. +.++.|++++|.+.. +|..+ +.+|++|++++| .+..+|..+
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-------LP~~l--~~nL~~L~Ls~N------~LtsLP~~l 239 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-------LPENL--QGNIKTLYANSN------QLTSIPATL 239 (754)
T ss_pred ccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-------CChhh--ccCCCEEECCCC------ccccCChhh
Confidence 3445566666666666776553 579999999998653 33323 258999999984 555677655
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
. .+|+.|++++|. +..+|..+. .+|++|++++|. +..+|..+. .+|++|++++|. +..+|..+. ++|+.
T Consensus 240 ~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~ 308 (754)
T PRK15370 240 P--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITH 308 (754)
T ss_pred h--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHH
Confidence 3 479999999999 778998775 589999999887 778887664 589999999984 456675543 46777
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHH
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQL 388 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (582)
|++..+..... +..+ ...|+.|.+..+... .
T Consensus 309 L~Ls~N~Lt~L-----P~~l---------------------------------~~sL~~L~Ls~N~Lt-----------~ 339 (754)
T PRK15370 309 LNVQSNSLTAL-----PETL---------------------------------PPGLKTLEAGENALT-----------S 339 (754)
T ss_pred HHhcCCccccC-----Cccc---------------------------------cccceeccccCCccc-----------c
Confidence 77654332210 1000 012333333322111 0
Q ss_pred HHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCC
Q 007979 389 LLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGI 467 (582)
Q Consensus 389 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 467 (582)
++..+ +++|+.|++++|.+..+ |..+ .++|+.|+|++|.... +|. +. ++|+.|++++|. +..+|..+...
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~ 410 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNN-LVRLPESLPHF 410 (754)
T ss_pred CChhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCC-cccCchhHHHH
Confidence 11111 25788888888887765 6654 3678888888886553 443 32 368888888876 66666543211
Q ss_pred CCCCCCCCCCCcccccCcccccccccccc
Q 007979 468 ESDHHDSSSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
...+|++..|.+.++|
T Consensus 411 -------------~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 411 -------------RGEGPQPTRIIVEYNP 426 (754)
T ss_pred -------------hhcCCCccEEEeeCCC
Confidence 1245677777777764
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=5.7e-15 Score=136.59 Aligned_cols=128 Identities=18% Similarity=0.191 Sum_probs=88.8
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch-hh
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE-TL 252 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i 252 (582)
.-..+.|..|.+ ..+++.+|+.+++||.|||++|+++. --|.+|.+++.|..|-+.++..|..+|. .|
T Consensus 68 ~tveirLdqN~I------~~iP~~aF~~l~~LRrLdLS~N~Is~-----I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQI------SSIPPGAFKTLHRLRRLDLSKNNISF-----IAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cceEEEeccCCc------ccCChhhccchhhhceecccccchhh-----cChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 445666777763 34477778888888888888854432 2367788888887777777333888885 47
Q ss_pred hccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCc-cCCCCCCCCccCeee
Q 007979 253 CELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPA-GIARLPSLRTLDEFH 313 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~ 313 (582)
++|..||.|.+.-|+..-.....+..|++|..|.+.+|. ...++. .+..+.+++++.+..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhc
Confidence 888888888888877444445667888888888888773 355555 466677777776543
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=1.6e-13 Score=134.67 Aligned_cols=249 Identities=20% Similarity=0.157 Sum_probs=132.2
Q ss_pred cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccc-ccccccccccccccCCCCEEecCCCCCcc
Q 007979 168 STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATL-CSSILDIPRNIEKLVHLRYLNLSSVTLIR 246 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-~~~l~~lp~~i~~L~~L~~L~L~~~~~~~ 246 (582)
.+..+..|+.|.+.++.+.... ...++..+...+.|+.|+++++.+.+ ...+..++..+..+++|++|++++|.+..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 3445566788888877754321 12245446677778888887755441 12333455566677788888888777444
Q ss_pred ccchhhhccCC---ccEEecCCCcCcc----ccccccccC-CCCceeecCCccCCC----cCCccCCCCCCCCccCeeee
Q 007979 247 KLPETLCELYN---LEKLDISYCINLK----ALPQGIGKL-INMKHLLNERTDSLG----HMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 247 ~lp~~i~~L~~---L~~L~L~~~~~l~----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~~~~~ 314 (582)
..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.+|.... .++..+..+++|++|++..+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 45555555555 8888887776331 223344555 777777777775432 12223344455555554332
Q ss_pred cCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCC
Q 007979 315 SGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQ 394 (582)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 394 (582)
.... .........+...+.|+.|+++.+... ......+...+.
T Consensus 176 ~l~~-------------------------------~~~~~l~~~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~~~ 218 (319)
T cd00116 176 GIGD-------------------------------AGIRALAEGLKANCNLEVLDLNNNGLT------DEGASALAETLA 218 (319)
T ss_pred CCch-------------------------------HHHHHHHHHHHhCCCCCEEeccCCccC------hHHHHHHHHHhc
Confidence 2110 000001111223345555555544321 112233444555
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhh-c----CcCCcEEEEeCCCCCCc----CC-CCCCCCCcceeeccccc
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMM-S----LTNLRSLNLHLCENCEQ----LP-PLGKLPSLEKLYISDMK 455 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~-~----l~~L~~L~l~~~~~~~~----l~-~l~~l~~L~~L~L~~~~ 455 (582)
.+++|++|++++|.+.......+. . .+.|+.|++++|..... +. .+..+++|+++++++|.
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 667777777777765532122222 1 36777777777755421 11 14445677777777766
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=1.1e-12 Score=128.74 Aligned_cols=263 Identities=21% Similarity=0.108 Sum_probs=160.7
Q ss_pred ceeEEEEEecCCC-----cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 151 KVCHLMLVIGLGA-----SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 151 ~~~~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
.++.+.+..+... .++..+...+.++.+.++++.+.........++..+..+++|+.|+++++.+.. ..+
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~ 98 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP-----DGC 98 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-----hHH
Confidence 3667777776652 345556677889999999987652111122345668889999999999954432 334
Q ss_pred ccccccCC---CCEEecCCCCCcc----ccchhhhcc-CCccEEecCCCcCcc----ccccccccCCCCceeecCCccCC
Q 007979 226 RNIEKLVH---LRYLNLSSVTLIR----KLPETLCEL-YNLEKLDISYCINLK----ALPQGIGKLINMKHLLNERTDSL 293 (582)
Q Consensus 226 ~~i~~L~~---L~~L~L~~~~~~~----~lp~~i~~L-~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~ 293 (582)
..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.... .++..+..+++|++|++.+|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44544544 9999999998431 344456677 999999999998442 34555677889999999998654
Q ss_pred C----cCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEE
Q 007979 294 G----HMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLR 369 (582)
Q Consensus 294 ~----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 369 (582)
. .++..+..+++|+.|++..+..... .. ......+..+++|+.|+
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------~~------------------------~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDE-------GA------------------------SALAETLASLKSLEVLN 227 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChH-------HH------------------------HHHHHHhcccCCCCEEe
Confidence 2 2333445566888887665432210 00 01111233445566666
Q ss_pred EEeeecCCCCCCccchHHHHHhhC-CCCCCCcEEEEeeEeCCCc----CCchhhcCcCCcEEEEeCCCCCCc----CC-C
Q 007979 370 LWFDVKESGGRRKNEHDQLLLEAL-QPPLNLKELFIGSYGGNTV----SPSWMMSLTNLRSLNLHLCENCEQ----LP-P 439 (582)
Q Consensus 370 l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----l~-~ 439 (582)
++.+.... .....+...+ ...+.|++|++++|.+... ++..+..+++|+.+++++|..... +. .
T Consensus 228 ls~n~l~~------~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 228 LGDNNLTD------AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred cCCCcCch------HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 65443210 0111122221 1357889999988877521 133444668899999998876643 22 1
Q ss_pred CCCC-CCcceeeccccc
Q 007979 440 LGKL-PSLEKLYISDMK 455 (582)
Q Consensus 440 l~~l-~~L~~L~L~~~~ 455 (582)
+... +.|+.|++.+++
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3334 678888887654
No 25
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.94 E-value=4.4e-11 Score=115.32 Aligned_cols=73 Identities=36% Similarity=0.786 Sum_probs=59.1
Q ss_pred CCHHHHHHHhcccccccc---ccCCCchHHHHhhhccCChhhhhHhhhccCCCCCCccCHHHHHHHHHHcCCccCC
Q 007979 5 KTEEEWCRILNNDLWKIE---EIEKGVLSPLLLSYNDLPSRVKRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSAE 77 (582)
Q Consensus 5 ~~~~~W~~~l~~~~~~~~---~~~~~i~~~L~lSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~~ 77 (582)
.+.++|+.++++..+... +....++.++.+||+.||+++|.||+|||+||+++.|+++.|+++|+||||+...
T Consensus 210 ~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 210 STVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 366789998876444332 2236699999999999999999999999999999999999999999999999754
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9e-10 Score=104.10 Aligned_cols=211 Identities=19% Similarity=0.164 Sum_probs=122.2
Q ss_pred cccCCCCEEecCCCCCccccch--hhhccCCccEEecCCCcCcc--ccccccccCCCCceeecCCccCCCcCCccC-CCC
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPE--TLCELYNLEKLDISYCINLK--ALPQGIGKLINMKHLLNERTDSLGHMPAGI-ARL 303 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i-~~l 303 (582)
.++++|+...|+++. ++..+. ....|++++.|||++|-... .+-.....|++|+.|+++.|.......... ..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 466777777777777 665553 56677788888887764222 222334567777777777663221110000 011
Q ss_pred CCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCcc
Q 007979 304 PSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKN 383 (582)
Q Consensus 304 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 383 (582)
+. ++.|.++.|+.
T Consensus 197 ~~-----------------------------------------------------------lK~L~l~~CGl-------- 209 (505)
T KOG3207|consen 197 SH-----------------------------------------------------------LKQLVLNSCGL-------- 209 (505)
T ss_pred hh-----------------------------------------------------------hheEEeccCCC--------
Confidence 12 22222222221
Q ss_pred chHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCC--cCCCCCCCCCcceeecccccCceEeC
Q 007979 384 EHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCE--QLPPLGKLPSLEKLYISDMKSVKRVG 461 (582)
Q Consensus 384 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~ 461 (582)
....+...+..+|+|+.|++.+|...........-+..|+.|+|++|.... ..+..+.+|.|+.|.++.|. +.++-
T Consensus 210 -s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~ 287 (505)
T KOG3207|consen 210 -SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA 287 (505)
T ss_pred -CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc
Confidence 123344445567888889998885322213334467789999999987665 34568889999999998775 54442
Q ss_pred ccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccc
Q 007979 462 NEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAV 526 (582)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 526 (582)
.-- .........||+|++|.+..+ ++.+|+.-. .+..+++|+.|.+..
T Consensus 288 ~~d----------~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~------~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 288 EPD----------VESLDKTHTFPKLEYLNISEN-NIRDWRSLN------HLRTLENLKHLRITL 335 (505)
T ss_pred CCC----------ccchhhhcccccceeeecccC-ccccccccc------hhhccchhhhhhccc
Confidence 110 111122357999999999887 455554321 134667777777654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=1.8e-10 Score=112.14 Aligned_cols=125 Identities=31% Similarity=0.411 Sum_probs=95.2
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
.+..-...+++.|++.. +|..+..|..|..|.|..| .+..+|..++++..|.+|+|+.|+ +..+|.
T Consensus 73 ~ltdt~~aDlsrNR~~e-------lp~~~~~f~~Le~liLy~n------~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~ 138 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-------LPEEACAFVSLESLILYHN------CIRTIPEAICNLEALTFLDLSSNQ-LSHLPD 138 (722)
T ss_pred cccchhhhhcccccccc-------CchHHHHHHHHHHHHHHhc------cceecchhhhhhhHHHHhhhccch-hhcCCh
Confidence 34444556677776432 4554677777888888873 566788888899999999999888 888888
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
.++.|+ |+.|.+++|+ ++.+|..++.+..|.+|+.+.|. +..+|..++.+.+|+.|.+.
T Consensus 139 ~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHh
Confidence 888776 8888888877 88888888888888888888884 46677777777777777643
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.9e-09 Score=90.32 Aligned_cols=130 Identities=28% Similarity=0.378 Sum_probs=51.3
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHc-cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFG-KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l 248 (582)
.+..+++.|++.+|.+.. +.. ++ .+.+|++|++++|. +..++ .+..+++|++|++++|. +..+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-------Ie~-L~~~l~~L~~L~Ls~N~------I~~l~-~l~~L~~L~~L~L~~N~-I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-------IEN-LGATLDKLEVLDLSNNQ------ITKLE-GLPGLPRLKTLDLSNNR-ISSI 79 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS----S-
T ss_pred cccccccccccccccccc-------ccc-hhhhhcCCCEEECCCCC------Ccccc-CccChhhhhhcccCCCC-CCcc
Confidence 455578999999998543 222 33 57889999999954 44443 46678999999999999 7788
Q ss_pred chhh-hccCCccEEecCCCcCccccc--cccccCCCCceeecCCccCCCcCC----ccCCCCCCCCccCeeeecCC
Q 007979 249 PETL-CELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTDSLGHMP----AGIARLPSLRTLDEFHVSGG 317 (582)
Q Consensus 249 p~~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~~~~ 317 (582)
++.+ ..+++|++|++++|. +..+- ..+..+++|+.|++.+|..... + ..+..+|+|+.|+...+...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETTS-
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEccHH
Confidence 6555 468999999999987 54433 3467889999999998854322 2 12567888888886655443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=1.3e-08 Score=102.79 Aligned_cols=107 Identities=36% Similarity=0.490 Sum_probs=87.0
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccC-CCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLV-HLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIG 277 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 277 (582)
...+..+..|++.+ ..+..+|...+.+. +|+.|++++|. +..+|..++.+++|+.|++++|. +..+|...+
T Consensus 112 ~~~~~~l~~L~l~~------n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~ 183 (394)
T COG4886 112 LLELTNLTSLDLDN------NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS 183 (394)
T ss_pred hhcccceeEEecCC------cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhh
Confidence 45567899999998 36667887777775 99999999999 88888889999999999999988 888888777
Q ss_pred cCCCCceeecCCccCCCcCCccCCCCCCCCccCeeee
Q 007979 278 KLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 278 ~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 314 (582)
.+++|+.|++++| .+..+|..++.+..|++|.+...
T Consensus 184 ~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 8899999999988 45677776666666888775543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=3e-09 Score=95.63 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=55.2
Q ss_pred ccCCCCceEEEEeCCc--CCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcc
Q 007979 169 TCRIKRMRSLFISGNM--LDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR 246 (582)
Q Consensus 169 ~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~ 246 (582)
+..+.+|..|..++.. ++.+++....+|--+.-+++|..+.++. | .-+.+-.....-+.|.++..+++. +.
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~-----~-~~~~i~~~~~~kptl~t~~v~~s~-~~ 250 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA-----L-STENIVDIELLKPTLQTICVHNTT-IQ 250 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec-----c-chhheeceeecCchhheeeeeccc-cc
Confidence 3445667777766543 3333333333333345567777777776 3 222222222233456666666544 22
Q ss_pred ccc----hh--------------------hhccCCccEEecCCCcCccccccccccCCCCceeecCCc
Q 007979 247 KLP----ET--------------------LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 247 ~lp----~~--------------------i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 290 (582)
..| .. +...+.|.+|||++|. ++.+..++.-+++++.|+++.|
T Consensus 251 ~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N 317 (490)
T KOG1259|consen 251 DVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN 317 (490)
T ss_pred ccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhhhhhccceeEEecccc
Confidence 211 11 1122345555555554 4555555555555555555555
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=5.4e-08 Score=103.05 Aligned_cols=103 Identities=26% Similarity=0.386 Sum_probs=77.7
Q ss_pred ceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCc
Q 007979 204 SLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMK 283 (582)
Q Consensus 204 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 283 (582)
.++.|+|++|.+.+ .+|..++.+++|++|+|++|.+.+.+|..++.+++|++|+|++|.....+|..+++|++|+
T Consensus 419 ~v~~L~L~~n~L~g-----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG-----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc-----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 47778888854443 5777888888888888888886678888888888888888888876667888888888888
Q ss_pred eeecCCccCCCcCCccCCCC-CCCCccCe
Q 007979 284 HLLNERTDSLGHMPAGIARL-PSLRTLDE 311 (582)
Q Consensus 284 ~L~l~~~~~~~~~p~~i~~l-~~L~~L~~ 311 (582)
+|++++|...+.+|..++.+ .++..+++
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEe
Confidence 88888887777788776543 34444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=3.7e-08 Score=84.96 Aligned_cols=125 Identities=25% Similarity=0.245 Sum_probs=52.7
Q ss_pred CcceeEEEEEecCCCccccccc-CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTC-RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
+...+.+.+.++.+..+. .+. .+.+|+.|++++|.+.. ++. +..++.|++|++++| .+..++..
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-------l~~-l~~L~~L~~L~L~~N------~I~~i~~~ 82 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-------LEG-LPGLPRLKTLDLSNN------RISSISEG 82 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--SS---------S-CHH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-------ccC-ccChhhhhhcccCCC------CCCccccc
Confidence 345688888888877654 344 57899999999998653 222 678999999999995 45556544
Q ss_pred c-cccCCCCEEecCCCCCccccc--hhhhccCCccEEecCCCcCcccccc----ccccCCCCceeecCCc
Q 007979 228 I-EKLVHLRYLNLSSVTLIRKLP--ETLCELYNLEKLDISYCINLKALPQ----GIGKLINMKHLLNERT 290 (582)
Q Consensus 228 i-~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~ 290 (582)
+ ..+++|+.|++++|. +..+- ..+..+++|++|++.+|. +...+. .+..+++|+.||-...
T Consensus 83 l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 5 468999999999998 65443 357789999999999997 444332 4578999999987544
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=8.2e-10 Score=101.49 Aligned_cols=260 Identities=20% Similarity=0.169 Sum_probs=147.0
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCC---Cccccchh-------hhccCCccEEecCCCcC
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVT---LIRKLPET-------LCELYNLEKLDISYCIN 268 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~---~~~~lp~~-------i~~L~~L~~L~L~~~~~ 268 (582)
...+..+..++|++|.+.. .--..+-..+.+.++|+..++++-- ....+|+. +-.+++|++||||+|..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~-EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGT-EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhH-HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 6788999999999977653 2334455667777899999988632 12244443 44667899999999875
Q ss_pred ccccccc----cccCCCCceeecCCccCCCcCCccCCCCC-CCCccCeeeecCCCCcCCCCccccccccCCCccCeeeee
Q 007979 269 LKALPQG----IGKLINMKHLLNERTDSLGHMPAGIARLP-SLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIR 343 (582)
Q Consensus 269 l~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~ 343 (582)
-..-+.. +.+++.|++|++.+|.. + |.+=+.+. .|..|..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g--~~ag~~l~~al~~l~~-------------------------------- 149 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGL-G--PEAGGRLGRALFELAV-------------------------------- 149 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCC-C--hhHHHHHHHHHHHHHH--------------------------------
Confidence 4333332 35677888888887732 2 21111110 1111110
Q ss_pred ecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCc----CCchhhc
Q 007979 344 RLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTV----SPSWMMS 419 (582)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~p~~~~~ 419 (582)
.........|+.+....+. ..+.....+...++.++.|+.+.+..|.+..- +...+..
T Consensus 150 ------------~kk~~~~~~Lrv~i~~rNr------len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~ 211 (382)
T KOG1909|consen 150 ------------NKKAASKPKLRVFICGRNR------LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH 211 (382)
T ss_pred ------------HhccCCCcceEEEEeeccc------cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence 0011122233333332221 11223455566777778888888888776431 1234558
Q ss_pred CcCCcEEEEeCCCCCCcCC-----CCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccc
Q 007979 420 LTNLRSLNLHLCENCEQLP-----PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIED 494 (582)
Q Consensus 420 l~~L~~L~l~~~~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 494 (582)
+++|+.|+|.+|.+...-. .+..+++|+.|++++|. ++.-+...+... ...++|+|+.|.+.+
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a-----------l~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA-----------LKESAPSLEVLELAG 279 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH-----------HhccCCCCceeccCc
Confidence 8888888888886543211 25667788888888886 444332211110 012578888888887
Q ss_pred cccccccccCcccCCCCCCcccccccceeccccc
Q 007979 495 LPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 495 ~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
|. ++.=. ......++...|.|+.|.|++|.
T Consensus 280 Ne-It~da---~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 280 NE-ITRDA---ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ch-hHHHH---HHHHHHHHhcchhhHHhcCCccc
Confidence 62 21100 00000013357888888888865
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=1.6e-08 Score=93.13 Aligned_cols=265 Identities=20% Similarity=0.178 Sum_probs=150.5
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc-------ccccCCCCEEe
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN-------IEKLVHLRYLN 238 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-------i~~L~~L~~L~ 238 (582)
......+..++.+++++|.+... ...++...+.+-+.||.-++++.... ....++|.. +..+++|++|+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~E--Aa~~i~~~L~~~~~L~~v~~sd~ftG--R~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTE--AARAIAKVLASKKELREVNLSDMFTG--RLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred HHHhcccCceEEEeccCCchhHH--HHHHHHHHHhhcccceeeehHhhhcC--CcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 33456778899999999987542 33445566888899999999873211 123345543 44667999999
Q ss_pred cCCCCCccccc----hhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeee
Q 007979 239 LSSVTLIRKLP----ETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFH 313 (582)
Q Consensus 239 L~~~~~~~~lp----~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 313 (582)
||+|-+-..-+ +-+.++..|++|.|.+|. +.... ..+++ .|.+|. .+ ..++.-+.|+++....
T Consensus 99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGR 166 (382)
T ss_pred ccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeec
Confidence 99998433322 346789999999999997 33211 11111 122221 01 0111223333333222
Q ss_pred ecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhC
Q 007979 314 VSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEAL 393 (582)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 393 (582)
+...+. .......-++....|....+...+.-+.-..+....+..+++|+.|++..+.... .....+...+
T Consensus 167 Nrlen~---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~------egs~~LakaL 237 (382)
T KOG1909|consen 167 NRLENG---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL------EGSVALAKAL 237 (382)
T ss_pred cccccc---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh------HHHHHHHHHh
Confidence 221110 0000111112222233333322222222223455567778888888887554331 1234455667
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhh-----cCcCCcEEEEeCCCCCCcCC-----CCCCCCCcceeeccccc
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMM-----SLTNLRSLNLHLCENCEQLP-----PLGKLPSLEKLYISDMK 455 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~l~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 455 (582)
...++|+.|++++|.+..--...+. ..++|+.|.+.+|.....-. .+...|.|+.|+|++|.
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 7778899999999887653222222 67899999999987554311 14568899999999987
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.1e-08 Score=100.18 Aligned_cols=186 Identities=26% Similarity=0.339 Sum_probs=135.3
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCC-ceeEEEeCCCccccccccccccccccccCCCCEEecCCCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLT-SLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~ 244 (582)
.......+.++.|.+.++.+.. ++.....+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~-------i~~~~~~~~~nL~~L~l~~------N~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITD-------IPPLIGLLKSNLKELDLSD------NKIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred chhhhcccceeEEecCCccccc-------Cccccccchhhcccccccc------cchhhhhhhhhccccccccccCCch-
Confidence 3344556789999999998543 333244553 899999998 3677787889999999999999999
Q ss_pred ccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCC
Q 007979 245 IRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRK 324 (582)
Q Consensus 245 ~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~ 324 (582)
+..+|...+.+++|+.|++++|. +..+|..+..+..|+.|.+.+|. ....+..+..+.++..+.+......
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~------- 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE------- 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-------
Confidence 99999888799999999999988 88899877788889999999884 2344444555555555541111000
Q ss_pred ccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEE
Q 007979 325 GCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFI 404 (582)
Q Consensus 325 ~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 404 (582)
..+..+..++++++|++
T Consensus 246 ---------------------------------------------------------------~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 246 ---------------------------------------------------------------DLPESIGNLSNLETLDL 262 (394)
T ss_pred ---------------------------------------------------------------eccchhccccccceecc
Confidence 00123345566888888
Q ss_pred eeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC
Q 007979 405 GSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP 439 (582)
Q Consensus 405 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~ 439 (582)
++|.+..+ +. ++.+.+|+.|+++++.....++.
T Consensus 263 s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 263 SNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 88888776 44 77888888888888876666554
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=7.4e-08 Score=102.02 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred CCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 233 HLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
.++.|+|++|.+.+.+|..++++++|+.|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|+.|++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888777888888888888888888888666788888888888888888887777888888888888888876
Q ss_pred eec
Q 007979 313 HVS 315 (582)
Q Consensus 313 ~~~ 315 (582)
.+.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 553
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=3.5e-09 Score=99.61 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=80.1
Q ss_pred CCCCCcEEEEeeEeCCCcCCch--hhcCcCCcEEEEeCCCCCCcCCC---CCCCCCcceeecccccCceEeCccccCCCC
Q 007979 395 PPLNLKELFIGSYGGNTVSPSW--MMSLTNLRSLNLHLCENCEQLPP---LGKLPSLEKLYISDMKSVKRVGNEILGIES 469 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 469 (582)
.+..|+.|+.+++....-.+-| ..+.++|+.|.+..|+...+.-. -.+.+.|+.+++.+|..+..- ++...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-- 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-- 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh--
Confidence 3445555555554432211111 12566777777777764332211 345667777777766533221 11111
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccC-CcCCCCCCCcceEEE
Q 007979 470 DHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKAL-PDHIHQTTTLKGLSI 548 (582)
Q Consensus 470 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l-p~~~~~l~~L~~L~i 548 (582)
..++|.|+.|.+++|...++-....... ...++..|+.+.+.+|+.++.- -+.+..+++|+.+++
T Consensus 368 -----------s~~C~~lr~lslshce~itD~gi~~l~~---~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 368 -----------SRNCPRLRVLSLSHCELITDEGIRHLSS---SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred -----------ccCCchhccCChhhhhhhhhhhhhhhhh---ccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 2367888888888776555442111000 1236677888888888876642 245566778888888
Q ss_pred eCCcchHHH
Q 007979 549 WGCDLLEER 557 (582)
Q Consensus 549 ~~C~~l~~~ 557 (582)
.+|..+...
T Consensus 434 ~~~q~vtk~ 442 (483)
T KOG4341|consen 434 IDCQDVTKE 442 (483)
T ss_pred echhhhhhh
Confidence 888776544
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=5.5e-09 Score=102.10 Aligned_cols=136 Identities=23% Similarity=0.354 Sum_probs=89.9
Q ss_pred CcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCC
Q 007979 163 ASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSV 242 (582)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~ 242 (582)
..+|.+++.+..|..|+++.|++.. +|..+..++ |++|.+++ +.+..+|..++.+.+|..|+.+.|
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~-------lp~~lC~lp-Lkvli~sN------Nkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSH-------LPDGLCDLP-LKVLIVSN------NKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhc-------CChhhhcCc-ceeEEEec------CccccCCcccccchhHHHhhhhhh
Confidence 3446667777777777777776432 233233333 77777776 356667777777777777777777
Q ss_pred CCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecC
Q 007979 243 TLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSG 316 (582)
Q Consensus 243 ~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 316 (582)
. +..+|..++.+.+|+.|.++.|. +..+|.++.. -.|..|+++.| .+..+|..+.+|+.|++|-+-++..
T Consensus 177 e-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~~-LpLi~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 177 E-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred h-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhC-CceeeeecccC-ceeecchhhhhhhhheeeeeccCCC
Confidence 7 67777777777777777777766 5666766663 35667777655 4566777777777777776554443
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.8e-08 Score=94.18 Aligned_cols=157 Identities=18% Similarity=0.104 Sum_probs=100.3
Q ss_pred CcceeEEEEEecCCCccc--ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFP--VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
..+++.+++.+...+..+ .-...|++++.|+++.|-+..-. .+-.+...+++|+.|+|+.|.+.. ...+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----~v~~i~eqLp~Le~LNls~Nrl~~--~~~s~-- 191 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----PVLKIAEQLPSLENLNLSSNRLSN--FISSN-- 191 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----HHHHHHHhcccchhcccccccccC--Ccccc--
Confidence 456677777776655433 24567899999999998754321 133446789999999999876542 22221
Q ss_pred cccccCCCCEEecCCCCCcc-ccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCC--ccCCCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIR-KLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMP--AGIARL 303 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l 303 (582)
.-..+++|+.|.++.|.+.- .+-.....+++|+.|+|.+|..+..-.....-+..|+.|++++|+... ++ ..++.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccc
Confidence 12367889999999988331 233345567899999999885333222233456788889998886543 33 235666
Q ss_pred CCCCccCeeee
Q 007979 304 PSLRTLDEFHV 314 (582)
Q Consensus 304 ~~L~~L~~~~~ 314 (582)
+.|..|++..+
T Consensus 271 ~~L~~Lnls~t 281 (505)
T KOG3207|consen 271 PGLNQLNLSST 281 (505)
T ss_pred cchhhhhcccc
Confidence 77777665443
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=7.5e-09 Score=97.47 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=97.4
Q ss_pred CCCCcEEEEeeEeCCCcCCchh--hcCcCCcEEEEeCCCCCCcCCC---CCCCCCcceeecccccCceEeCccccCCCCC
Q 007979 396 PLNLKELFIGSYGGNTVSPSWM--MSLTNLRSLNLHLCENCEQLPP---LGKLPSLEKLYISDMKSVKRVGNEILGIESD 470 (582)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 470 (582)
+..+.++++..|.......-|. ..+..|+.|+.++|....+.+. ..+.++|+.|.+..|+.++.......+
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~---- 342 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG---- 342 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh----
Confidence 3445555555554333211121 2688899999999987655443 456799999999999987776655443
Q ss_pred CCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccC-----CcCCCCCCCcce
Q 007979 471 HHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKAL-----PDHIHQTTTLKG 545 (582)
Q Consensus 471 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l-----p~~~~~l~~L~~ 545 (582)
.+.+.|+.+.+..|....+-..... -.++|.|++|.++.|..++.- ...-.....|+.
T Consensus 343 -----------rn~~~Le~l~~e~~~~~~d~tL~sl------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 343 -----------RNCPHLERLDLEECGLITDGTLASL------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred -----------cCChhhhhhcccccceehhhhHhhh------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 2678999999988854433211111 128999999999999887754 334445778999
Q ss_pred EEEeCCcchHHHh
Q 007979 546 LSIWGCDLLEERY 558 (582)
Q Consensus 546 L~i~~C~~l~~~~ 558 (582)
+++++||.+++..
T Consensus 406 lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 406 LELDNCPLITDAT 418 (483)
T ss_pred eeecCCCCchHHH
Confidence 9999999988764
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=3e-08 Score=89.28 Aligned_cols=127 Identities=22% Similarity=0.280 Sum_probs=91.4
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
.+..|..+++++|.+.. +.+...-.+.+|+|++++|.+ ..+ .++..|++|+.|||++|. +.++-.
T Consensus 282 TWq~LtelDLS~N~I~~-------iDESvKL~Pkir~L~lS~N~i------~~v-~nLa~L~~L~~LDLS~N~-Ls~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-------IDESVKLAPKLRRLILSQNRI------RTV-QNLAELPQLQLLDLSGNL-LAECVG 346 (490)
T ss_pred hHhhhhhccccccchhh-------hhhhhhhccceeEEeccccce------eee-hhhhhcccceEeecccch-hHhhhh
Confidence 45667888888887432 344466677889999988543 333 347778888999999888 666665
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcC--CccCCCCCCCCccCeeeec
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHM--PAGIARLPSLRTLDEFHVS 315 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~L~~~~~~ 315 (582)
.-.+|.|.++|.|+.|. +..+ +++++|.+|..|++.+|+. ..+ ..+|++++.|+++.+.++.
T Consensus 347 wh~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hHhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCC
Confidence 66688888899888876 6655 4588888899999988853 332 2468888888888765443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=7.3e-07 Score=62.82 Aligned_cols=57 Identities=32% Similarity=0.529 Sum_probs=30.6
Q ss_pred ceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCc
Q 007979 204 SLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCI 267 (582)
Q Consensus 204 ~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 267 (582)
+|++|++++ + .+..+| ..+..+++|++|++++|. +..+| ..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~-----n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN-----N-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS-----S-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC-----C-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 455666665 2 444444 344556666666666555 34443 345566666666665554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.9e-08 Score=90.59 Aligned_cols=182 Identities=20% Similarity=0.157 Sum_probs=95.6
Q ss_pred CccEEecCCCcCcc-ccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCC
Q 007979 257 NLEKLDISYCINLK-ALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNME 335 (582)
Q Consensus 257 ~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 335 (582)
.||+|||++..... .+-..+..+.+|+.|.+.++..-..+...+.+-.+|+.|++..+.+..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t----------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT----------------- 248 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-----------------
Confidence 36666666543211 122334555566666666655444444445555555555555443322
Q ss_pred ccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCc---
Q 007979 336 LLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTV--- 412 (582)
Q Consensus 336 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--- 412 (582)
. .....-+.+|..|..|.++||.... ......... --++|..|+|+|+.-.-.
T Consensus 249 --------------~--n~~~ll~~scs~L~~LNlsWc~l~~------~~Vtv~V~h--ise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 249 --------------E--NALQLLLSSCSRLDELNLSWCFLFT------EKVTVAVAH--ISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred --------------h--hHHHHHHHhhhhHhhcCchHhhccc------hhhhHHHhh--hchhhhhhhhhhhHhhhhhhH
Confidence 1 1111223455566666666664331 001111111 225678888887743211
Q ss_pred CCchhhcCcCCcEEEEeCCCCCCc--CCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccc
Q 007979 413 SPSWMMSLTNLRSLNLHLCENCEQ--LPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSL 490 (582)
Q Consensus 413 ~p~~~~~l~~L~~L~l~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 490 (582)
+..-...+++|.+|+|++|..+.. +..+-.++.|++|.++.|..+ +|..+.. ....|+|.+|
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~--------------l~s~psl~yL 368 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE--------------LNSKPSLVYL 368 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee--------------eccCcceEEE
Confidence 011223788899999998865543 223667888999999888743 3333222 2356777777
Q ss_pred ccccc
Q 007979 491 FIEDL 495 (582)
Q Consensus 491 ~l~~~ 495 (582)
++.+|
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 76665
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1.2e-06 Score=61.76 Aligned_cols=58 Identities=29% Similarity=0.475 Sum_probs=43.5
Q ss_pred CCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCcc
Q 007979 232 VHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTD 291 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~ 291 (582)
++|++|++++|. +..+| ..|.++++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888887 66666 467788888888888877 55555 456888888888888774
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.4e-07 Score=82.61 Aligned_cols=62 Identities=21% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCCCCcEEEEeeEeCCC-cCCchhhcCcCCcEEEEeCCCCCC--cCCCCCCCCCcceeeccccc
Q 007979 394 QPPLNLKELFIGSYGGNT-VSPSWMMSLTNLRSLNLHLCENCE--QLPPLGKLPSLEKLYISDMK 455 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~L~~~~ 455 (582)
..+++|..|+|+.+.... -....+..++.|++|.++.|.... .+-.+...|+|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 467888888888875433 112234588999999999986543 23347888999999998874
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=5.8e-07 Score=91.02 Aligned_cols=125 Identities=27% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
.+..+..+.+..|.+.. .-..+..+++|..|++.+| .+..+...+..+++|++|++++|. |+.+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-------~~~~l~~~~~l~~l~l~~n------~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-------ILNHLSKLKSLEALDLYDN------KIEKIENLLSSLVNLQVLDLSFNK-ITKLE- 134 (414)
T ss_pred HhHhHHhhccchhhhhh-------hhcccccccceeeeecccc------chhhcccchhhhhcchheeccccc-ccccc-
Confidence 34455555555554321 1111566777888888774 333443336677788888888877 66664
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCcc-CCCCCCCCccCeee
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAG-IARLPSLRTLDEFH 313 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~ 313 (582)
.+..+..|+.|++.+|. +..++ .+..+++|+.+++++|..... ... ...+.+++.+.+..
T Consensus 135 ~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~i-e~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDI-ENDELSELISLEELDLGG 195 (414)
T ss_pred chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhh-hhhhhhhccchHHHhccC
Confidence 56777778888888876 55543 355577777778777744322 221 34556666665443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.4e-06 Score=52.94 Aligned_cols=34 Identities=41% Similarity=0.512 Sum_probs=20.4
Q ss_pred CCCEEecCCCCCccccchhhhccCCccEEecCCCc
Q 007979 233 HLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCI 267 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 267 (582)
+|++|++++|. +..+|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 56666666666 55666556666666666666665
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=1.3e-05 Score=78.13 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=82.7
Q ss_pred HhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCC
Q 007979 390 LEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIES 469 (582)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 469 (582)
...+..+.+++.|++++|.+..+ |. -.++|+.|.+++|..+..+|..- .++|+.|.+++|..+..+|.......-
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~sLe~L~L 119 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPESVRSLEI 119 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccccceEEe
Confidence 33455567888899988877666 62 33468899998888777777521 358889999888777766654321110
Q ss_pred CCCCCCCCCcccccC-cccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEE
Q 007979 470 DHHDSSSSSSVIIAF-PKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSI 548 (582)
Q Consensus 470 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i 548 (582)
.......+..+ ++|+.|.+.++.....+... .. --++|+.|.+.+|..+. +|..+ +.+|+.|++
T Consensus 120 ----~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~-----LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~l 184 (426)
T PRK15386 120 ----KGSATDSIKNVPNGLTSLSINSYNPENQARID---NL-----ISPSLKTLSLTGCSNII-LPEKL--PESLQSITL 184 (426)
T ss_pred ----CCCCCcccccCcchHhheeccccccccccccc---cc-----cCCcccEEEecCCCccc-Ccccc--cccCcEEEe
Confidence 00000011223 35566655432111111000 00 12689999999988653 55544 368899998
Q ss_pred eCC
Q 007979 549 WGC 551 (582)
Q Consensus 549 ~~C 551 (582)
..+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=2.1e-06 Score=76.61 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcc----c-------cchhhhccCCccEEecCCCcCcc
Q 007979 202 LTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR----K-------LPETLCELYNLEKLDISYCINLK 270 (582)
Q Consensus 202 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~----~-------lp~~i~~L~~L~~L~L~~~~~l~ 270 (582)
+..+..++|++|.+.. .....+...|.+-.+|+..+++.-. .+ . +.+.+-+|++|+..+|++|.+-.
T Consensus 29 ~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 4444555555544332 1222333334444455555554321 11 2 22346688999999999988666
Q ss_pred ccccc----cccCCCCceeecCCc
Q 007979 271 ALPQG----IGKLINMKHLLNERT 290 (582)
Q Consensus 271 ~lp~~----i~~l~~L~~L~l~~~ 290 (582)
..|.. +++-+.|.||.+++|
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecC
Confidence 66654 456688999999888
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=7.7e-05 Score=72.76 Aligned_cols=66 Identities=23% Similarity=0.408 Sum_probs=45.7
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQG 275 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 275 (582)
+..+.+++.|++++ | .+..+|. --.+|+.|.+++|..+..+|+.+. .+|++|++++|..+..+|..
T Consensus 48 ~~~~~~l~~L~Is~-----c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKD-----C-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCC-----C-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 45567788888887 5 5666662 123588888888776777776553 57888888888667777754
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=3.7e-05 Score=49.42 Aligned_cols=40 Identities=35% Similarity=0.547 Sum_probs=30.3
Q ss_pred CceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc
Q 007979 203 TSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp 249 (582)
++|++|++++| .+..+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N------~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN------QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS------S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC------CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 46888888882 666787778899999999999988 66665
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=2.5e-05 Score=70.92 Aligned_cols=106 Identities=24% Similarity=0.278 Sum_probs=63.6
Q ss_pred ceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCC---ccccchh
Q 007979 175 MRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTL---IRKLPET 251 (582)
Q Consensus 175 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~---~~~lp~~ 251 (582)
+..|.+-++.++... . ...+-..+..++.|||.+|.++.. .++...+.+|++|++|+++.|.+ |+.+|
T Consensus 47 ~ellvln~~~id~~g---d-~~~~~~~~~~v~elDL~~N~iSdW---seI~~ile~lP~l~~LNls~N~L~s~I~~lp-- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEG---D-VMLFGSSVTDVKELDLTGNLISDW---SEIGAILEQLPALTTLNLSCNSLSSDIKSLP-- 117 (418)
T ss_pred hhhheecCCCCCcch---h-HHHHHHHhhhhhhhhcccchhccH---HHHHHHHhcCccceEeeccCCcCCCccccCc--
Confidence 345555565554421 1 222235577888888888776543 23334456788888888888773 23333
Q ss_pred hhccCCccEEecCCCcC-ccccccccccCCCCceeecCCc
Q 007979 252 LCELYNLEKLDISYCIN-LKALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~-l~~lp~~i~~l~~L~~L~l~~~ 290 (582)
..+.+|++|.|.+... .+.....+..+++++.|+++.|
T Consensus 118 -~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 -LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred -ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3567888888877542 1223344566777777777766
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=1.3e-05 Score=81.17 Aligned_cols=106 Identities=30% Similarity=0.352 Sum_probs=77.5
Q ss_pred cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCC
Q 007979 201 KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLI 280 (582)
Q Consensus 201 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 280 (582)
.+..+..+.++.| .+..+-..++.+.+|++|++.+|. +..+...+..+++|++|++++|. +..+. ++..++
T Consensus 70 ~l~~l~~l~l~~n------~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQN------LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLT 140 (414)
T ss_pred HhHhHHhhccchh------hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhcc
Confidence 4555666667763 343433457788999999999999 77777558899999999999988 66664 478888
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccCeeeecCC
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGG 317 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~ 317 (582)
.|+.|++.+|.. ..+ .++..+++|+.+++.++...
T Consensus 141 ~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 141 LLKELNLSGNLI-SDI-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred chhhheeccCcc-hhc-cCCccchhhhcccCCcchhh
Confidence 899999999953 333 33555778888876665433
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=8.9e-05 Score=78.69 Aligned_cols=127 Identities=26% Similarity=0.345 Sum_probs=87.1
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcccc-
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKL- 248 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l- 248 (582)
..+|.|++|.+.+-.+.... +...+.++++|+.||+++ +++..+ .++++|++|+.|.+++=. +..-
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d-----F~~lc~sFpNL~sLDIS~------TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~ 211 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD-----FSQLCASFPNLRSLDISG------TNISNL-SGISRLKNLQVLSMRNLE-FESYQ 211 (699)
T ss_pred hhCcccceEEecCceecchh-----HHHHhhccCccceeecCC------CCccCc-HHHhccccHHHHhccCCC-CCchh
Confidence 45899999999998765433 344478999999999999 366666 778999999999998755 3321
Q ss_pred -chhhhccCCccEEecCCCcCccccccc-------cccCCCCceeecCCccCCCcCCcc-CCCCCCCCccC
Q 007979 249 -PETLCELYNLEKLDISYCINLKALPQG-------IGKLINMKHLLNERTDSLGHMPAG-IARLPSLRTLD 310 (582)
Q Consensus 249 -p~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 310 (582)
-..+.+|++|++||+|....... +.. -..|++||.|+.+++..-..+-.. +...++|+...
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred hHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 23577899999999998654332 211 124889999999887544333222 23455555544
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.43 E-value=0.00011 Score=66.00 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=68.1
Q ss_pred cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccc-----cccccccccccccCCCCEEecCCC
Q 007979 168 STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLC-----SSILDIPRNIEKLVHLRYLNLSSV 242 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-----~~l~~lp~~i~~L~~L~~L~L~~~ 242 (582)
.+..+..+..+++++|.+... ...++...+.+-++|++.+++.-..+.. ..+..+.+.+-+|++|+..+|+.|
T Consensus 25 el~~~d~~~evdLSGNtigtE--A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTE--AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHhhcceeEEeccCCcccHH--HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344578899999999986543 2334555577788999998886321110 011223345668999999999999
Q ss_pred CCccccchh----hhccCCccEEecCCCc
Q 007979 243 TLIRKLPET----LCELYNLEKLDISYCI 267 (582)
Q Consensus 243 ~~~~~lp~~----i~~L~~L~~L~L~~~~ 267 (582)
.+-...|+. |++-+.|++|.+++|.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 855555543 6778999999999987
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.3e-05 Score=68.81 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=66.6
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCc-ccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLI-RKL 248 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~-~~l 248 (582)
..+++++.+++.+|.+..-. + +-.++.+++.|++|+++.|.++. .|..+| ..+++|++|-|.++.+. ...
T Consensus 68 ~~~~~v~elDL~~N~iSdWs---e-I~~ile~lP~l~~LNls~N~L~s--~I~~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWS---E-IGAILEQLPALTTLNLSCNSLSS--DIKSLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred HHhhhhhhhhcccchhccHH---H-HHHHHhcCccceEeeccCCcCCC--ccccCc---ccccceEEEEEcCCCCChhhh
Confidence 45788999999999875422 1 34447899999999999988874 677776 34678999999887621 234
Q ss_pred chhhhccCCccEEecCCCc
Q 007979 249 PETLCELYNLEKLDISYCI 267 (582)
Q Consensus 249 p~~i~~L~~L~~L~L~~~~ 267 (582)
-..+..++.++.|.++.|.
T Consensus 139 ~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhhcchhhhhhhhccch
Confidence 4457788888888888875
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00015 Score=77.07 Aligned_cols=109 Identities=24% Similarity=0.268 Sum_probs=76.8
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhh
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 252 (582)
.+|+.|+++|... +...|+...-..+|.|+.|.+.+-.+.. .++-.-..++++|+.||++++. +..+ ..+
T Consensus 122 ~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~~----~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFDN----DDFSQLCASFPNLRSLDISGTN-ISNL-SGI 191 (699)
T ss_pred HhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceecc----hhHHHHhhccCccceeecCCCC-ccCc-HHH
Confidence 5788888888653 3344555556678999999998733221 1233445688899999999988 7777 589
Q ss_pred hccCCccEEecCCCcCccccc--cccccCCCCceeecCCccC
Q 007979 253 CELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTDS 292 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~ 292 (582)
+.|++||+|.+++=. ...-. ..+..|++|++||++....
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 999999999887744 22211 3467889999999987643
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=8.2e-05 Score=59.62 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=71.4
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc-ccCCCCEEecCCCCCccccchhh
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE-KLVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i 252 (582)
.+..+++++|.+-. +.. .+..+....+|...+|++ +.++++|+.+. +.+.+++|++++|. +..+|..+
T Consensus 28 E~h~ldLssc~lm~---i~d-avy~l~~~~el~~i~ls~------N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY---IAD-AVYMLSKGYELTKISLSD------NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhH---HHH-HHHHHhCCceEEEEeccc------chhhhCCHHHhhccchhhhhhcchhh-hhhchHHH
Confidence 34555666665321 111 222355666777778887 25666776654 44577888888887 78888888
Q ss_pred hccCCccEEecCCCcCccccccccccCCCCceeecCCcc
Q 007979 253 CELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTD 291 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 291 (582)
..++.|+.|+++.|. +...|.-+..|.+|-.|+..++.
T Consensus 97 Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCc
Confidence 888888888888877 66677777778888888877764
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=5.8e-06 Score=83.82 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.0
Q ss_pred cccccCCCCceEEEEeCCcCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDN 187 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~ 187 (582)
|..+..++.||+|-+.++++..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred CceeccccceeeEEecCcchhh
Confidence 5567778889999988887643
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.14 E-value=3.7e-05 Score=78.18 Aligned_cols=119 Identities=21% Similarity=0.236 Sum_probs=78.2
Q ss_pred EEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc-ccccCC
Q 007979 155 LMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN-IEKLVH 233 (582)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L~~ 233 (582)
.+...|....+..++.-++.|++|++++|.+.. .. .+..+++|+.|||++|. +..+|.- ...+ +
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-------v~-~Lr~l~~LkhLDlsyN~------L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-------VD-NLRRLPKLKHLDLSYNC------LRHVPQLSMVGC-K 233 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-------hH-HHHhcccccccccccch------hccccccchhhh-h
Confidence 333333333334556667788888888887532 12 36778888888888854 4444431 2233 3
Q ss_pred CCEEecCCCCCccccchhhhccCCccEEecCCCcCccccc--cccccCCCCceeecCCcc
Q 007979 234 LRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTD 291 (582)
Q Consensus 234 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~ 291 (582)
|..|.+++|. +..+- .+.+|++|+.||+++|- +.... .-++.|..|+.|++.+|.
T Consensus 234 L~~L~lrnN~-l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNA-LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccH-HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888887 77775 68888899999998875 32211 225667788888888884
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.97 E-value=0.0002 Score=57.48 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=71.1
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp 249 (582)
..-.+|...++++|.+.. .++.+-..++.+..|+|++ +.+.++|..+..++.||.|+++.|. +...|
T Consensus 50 ~~~~el~~i~ls~N~fk~------fp~kft~kf~t~t~lNl~~------neisdvPeE~Aam~aLr~lNl~~N~-l~~~p 116 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKK------FPKKFTIKFPTATTLNLAN------NEISDVPEELAAMPALRSLNLRFNP-LNAEP 116 (177)
T ss_pred hCCceEEEEecccchhhh------CCHHHhhccchhhhhhcch------hhhhhchHHHhhhHHhhhcccccCc-cccch
Confidence 344567777888887532 2445445667888999988 3677889889999999999999998 78888
Q ss_pred hhhhccCCccEEecCCCcCccccccc
Q 007979 250 ETLCELYNLEKLDISYCINLKALPQG 275 (582)
Q Consensus 250 ~~i~~L~~L~~L~L~~~~~l~~lp~~ 275 (582)
..|..|.+|-.||.-+|. ...+|-.
T Consensus 117 ~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888889999999998877 5666654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.96 E-value=0.00087 Score=57.74 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=68.5
Q ss_pred CcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCccccccccccccccc
Q 007979 420 LTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELE 499 (582)
Q Consensus 420 l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 499 (582)
..+...++|++|. ...++.+..++.|.+|.+++|. ++.|..... ..+|+|+.|.+.++ ++.
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNr-It~I~p~L~----------------~~~p~l~~L~LtnN-si~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLD----------------TFLPNLKTLILTNN-SIQ 101 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecCCc-ceeeccchh----------------hhccccceEEecCc-chh
Confidence 3456677787773 3445556677888888888776 777765432 26788888888876 444
Q ss_pred ccccCcccCCCCCCcccccccceecccccccccCC----cCCCCCCCcceEEEeCCc
Q 007979 500 EWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP----DHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp----~~~~~l~~L~~L~i~~C~ 552 (582)
++..-. .+..+|.|+.|.+-+.+ ++.-. -.+..+|+|+.|+..+-.
T Consensus 102 ~l~dl~------pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 102 ELGDLD------PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhcc------hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 443211 14478888888888754 23222 235567888888877654
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.71 E-value=0.0002 Score=74.71 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=27.9
Q ss_pred ccccceecccccccccCC-cCCC-CCCCcceEEEeCCcchHHHhc
Q 007979 517 PRLSALAIAVCPKLKALP-DHIH-QTTTLKGLSIWGCDLLEERYR 559 (582)
Q Consensus 517 ~~L~~L~l~~C~~L~~lp-~~~~-~l~~L~~L~i~~C~~l~~~~~ 559 (582)
..|+.|.+..|...+.-- .... .+..++.+.+.+|+.+.....
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 348888888887666421 1111 166788888888888776553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0028 Score=57.14 Aligned_cols=86 Identities=29% Similarity=0.226 Sum_probs=43.9
Q ss_pred ccCCCCEEecCCC--CCccccchhhhccCCccEEecCCCcCccc---cccccccCCCCceeecCCccCCCcCC---ccCC
Q 007979 230 KLVHLRYLNLSSV--TLIRKLPETLCELYNLEKLDISYCINLKA---LPQGIGKLINMKHLLNERTDSLGHMP---AGIA 301 (582)
Q Consensus 230 ~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~p---~~i~ 301 (582)
.|++|++|.++.| .....++-...++++|++|++++|+ ++. ++ .+..+.+|..|++.+|......- ..+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4556666666666 4344444445555666666666665 332 21 13455556666666664322100 1123
Q ss_pred CCCCCCccCeeeecCC
Q 007979 302 RLPSLRTLDEFHVSGG 317 (582)
Q Consensus 302 ~l~~L~~L~~~~~~~~ 317 (582)
-+++|..|+...+...
T Consensus 141 ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDGE 156 (260)
T ss_pred HhhhhccccccccCCc
Confidence 3566666665554443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.21 E-value=0.0059 Score=52.79 Aligned_cols=92 Identities=25% Similarity=0.292 Sum_probs=69.9
Q ss_pred HhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCC--CCcCCCCCCCCCcceeecccccCceEeCccccCC
Q 007979 390 LEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCEN--CEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGI 467 (582)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~--~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 467 (582)
...+..+++|.+|.+..|.++.+.|.--..+++|..|.+.+|.. ++++..+..+|.|++|.+-+|+ ++.-..--
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR--- 132 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYR--- 132 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCce---
Confidence 45677889999999999999998676666889999999999975 4467778899999999999887 43322100
Q ss_pred CCCCCCCCCCCcccccCccccccccccc
Q 007979 468 ESDHHDSSSSSSVIIAFPKLQSLFIEDL 495 (582)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 495 (582)
...+-.+|+|+.|+++..
T Consensus 133 ----------~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 ----------LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ----------eEEEEecCcceEeehhhh
Confidence 011336789999988764
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.00056 Score=61.77 Aligned_cols=99 Identities=24% Similarity=0.218 Sum_probs=61.2
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch-
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE- 250 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~- 250 (582)
+.+.+.|++.|+.+++.. +...|+.|+||.|+-| .|..+ ..+..|.+|+.|.|+.|. |.++-+
T Consensus 18 l~~vkKLNcwg~~L~DIs--------ic~kMp~lEVLsLSvN------kIssL-~pl~rCtrLkElYLRkN~-I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--------ICEKMPLLEVLSLSVN------KISSL-APLQRCTRLKELYLRKNC-IESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCccHHH--------HHHhcccceeEEeecc------ccccc-hhHHHHHHHHHHHHHhcc-cccHHHH
Confidence 455667777777754421 2567778888888763 33333 446677788888888777 655542
Q ss_pred -hhhccCCccEEecCCCcCcccccc-----ccccCCCCceee
Q 007979 251 -TLCELYNLEKLDISYCINLKALPQ-----GIGKLINMKHLL 286 (582)
Q Consensus 251 -~i~~L~~L~~L~L~~~~~l~~lp~-----~i~~l~~L~~L~ 286 (582)
.+.++++|++|.|..|..-..-+. .+.-|++|+.|+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 356777777777776654443332 234556666654
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00046 Score=59.43 Aligned_cols=68 Identities=15% Similarity=0.347 Sum_probs=53.9
Q ss_pred ccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCC-cCCCCCCCcceEEEeCCcchH
Q 007979 482 IAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP-DHIHQTTTLKGLSIWGCDLLE 555 (582)
Q Consensus 482 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~~C~~l~ 555 (582)
..+++++.|.+.+|..+.+|+.+-... -.|+|+.|+|++|+.+++-- ..+..+++|+.|.+.+.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 477899999999999999887543221 56999999999999988742 346678899999999987654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.00063 Score=61.45 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=73.4
Q ss_pred cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc--cccc
Q 007979 201 KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ--GIGK 278 (582)
Q Consensus 201 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~ 278 (582)
.+.+.+.|+.-+ | .+.++ ..+.+++.|++|.|+-|. |.++. .+..|++|+.|.|+.|. +..+.+ -+.+
T Consensus 17 dl~~vkKLNcwg-----~-~L~DI-sic~kMp~lEVLsLSvNk-IssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLkn 86 (388)
T KOG2123|consen 17 DLENVKKLNCWG-----C-GLDDI-SICEKMPLLEVLSLSVNK-ISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKN 86 (388)
T ss_pred HHHHhhhhcccC-----C-CccHH-HHHHhcccceeEEeeccc-cccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhc
Confidence 355667777777 4 55554 456789999999999999 77774 68899999999999987 555532 3578
Q ss_pred CCCCceeecCCccCCCcCCcc-----CCCCCCCCccC
Q 007979 279 LINMKHLLNERTDSLGHMPAG-----IARLPSLRTLD 310 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~ 310 (582)
+++|+.|.+..|.-.+.-+.. +.-|++|+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 899999999877544443322 44578888887
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0043 Score=55.92 Aligned_cols=84 Identities=25% Similarity=0.229 Sum_probs=56.6
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCC--cCccccccccccCCCCceeecCCccCCCcCCcc---CCCCC
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYC--INLKALPQGIGKLINMKHLLNERTDSLGHMPAG---IARLP 304 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---i~~l~ 304 (582)
.+..|+.|++.++. +..+- .+-.|++|+.|+++.| +....++.-..++++|++|++++|.. . .+.. +..+.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~-~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-K-DLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-c-cccccchhhhhc
Confidence 44566666676665 33332 4557899999999999 54555666567779999999999953 2 2333 34566
Q ss_pred CCCccCeeeecCC
Q 007979 305 SLRTLDEFHVSGG 317 (582)
Q Consensus 305 ~L~~L~~~~~~~~ 317 (582)
+|..|+++.|...
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 6777777766544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0051 Score=32.67 Aligned_cols=9 Identities=56% Similarity=0.844 Sum_probs=3.7
Q ss_pred CCEEecCCC
Q 007979 234 LRYLNLSSV 242 (582)
Q Consensus 234 L~~L~L~~~ 242 (582)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.008 Score=31.91 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=14.9
Q ss_pred CccEEecCCCcCcccccccccc
Q 007979 257 NLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 257 ~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
+|++||+++|. +..+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 57888888885 6677776554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.33 E-value=0.0014 Score=68.40 Aligned_cols=169 Identities=23% Similarity=0.212 Sum_probs=89.1
Q ss_pred CCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeE-eCCCcCC----chhhcCcCCcEEEEeCCCCCC
Q 007979 361 KKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSY-GGNTVSP----SWMMSLTNLRSLNLHLCENCE 435 (582)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~p----~~~~~l~~L~~L~l~~~~~~~ 435 (582)
.++.|+.+.+..+... ...........+++|++|+++++ ......+ .....+++|+.|+++.|....
T Consensus 186 ~~~~L~~l~l~~~~~~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKI--------TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccccC--------ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 3677777777655432 11224445566778888888763 2111112 122356788888888776432
Q ss_pred c--CCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCC
Q 007979 436 Q--LPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPF 512 (582)
Q Consensus 436 ~--l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 512 (582)
+ +.. ...+++|++|.+.+|..++.-+-.. ....+|+|++|+++.|..+.+-.....
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~---------------i~~~~~~L~~L~l~~c~~~~d~~l~~~------ 316 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVS---------------IAERCPSLRELDLSGCHGLTDSGLEAL------ 316 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHH---------------HHHhcCcccEEeeecCccchHHHHHHH------
Confidence 2 112 2236788888877776533322111 123677888888887776532211000
Q ss_pred Ccccccccceeccccc---ccccCC--cCCCCC-CCcceEEEeCCcchHHHh
Q 007979 513 IDIMPRLSALAIAVCP---KLKALP--DHIHQT-TTLKGLSIWGCDLLEERY 558 (582)
Q Consensus 513 ~~~~~~L~~L~l~~C~---~L~~lp--~~~~~l-~~L~~L~i~~C~~l~~~~ 558 (582)
...+++|+.|.+..+. .++.+- ...... ..+..+.+.+|+.+++..
T Consensus 317 ~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 1145655555554443 344321 111112 257777777777776543
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.03 E-value=0.17 Score=41.57 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC--CCCCCCcceeecccccCceEeCccc
Q 007979 393 LQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP--LGKLPSLEKLYISDMKSVKRVGNEI 464 (582)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~ 464 (582)
+..+.+|+.+.+.. ....+....+..+++|+.+.+.++ ...++. +..+++|+.+.+.+ .+..++...
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~ 76 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNA 76 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccc
Confidence 34445666666653 233332444556666777777653 222222 55666677777654 355555443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.0061 Score=52.72 Aligned_cols=68 Identities=24% Similarity=0.248 Sum_probs=36.7
Q ss_pred CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccc
Q 007979 440 LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRL 519 (582)
Q Consensus 440 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L 519 (582)
+..+++++.|.+.+|..+.+..-+..+ +.+|+|+.|+|++|+.+++-.. ..+..+++|
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~---------------~~~~~L~~L~lsgC~rIT~~GL-------~~L~~lknL 178 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG---------------GLAPSLQDLDLSGCPRITDGGL-------ACLLKLKNL 178 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc---------------ccccchheeeccCCCeechhHH-------HHHHHhhhh
Confidence 455566666666666554443322221 1456666677766666654332 123366666
Q ss_pred cceecccccc
Q 007979 520 SALAIAVCPK 529 (582)
Q Consensus 520 ~~L~l~~C~~ 529 (582)
+.|.+++-+.
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 6666666443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.05 E-value=0.22 Score=40.92 Aligned_cols=103 Identities=15% Similarity=0.288 Sum_probs=46.6
Q ss_pred cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCcc
Q 007979 168 STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIR 246 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~ 246 (582)
.+.++++|+.+.+...- ..+....|.++..|+.+.+.+ .+..++ ..+.++..|+.+.+.+ . +.
T Consensus 7 ~F~~~~~l~~i~~~~~~-------~~I~~~~F~~~~~l~~i~~~~-------~~~~i~~~~F~~~~~l~~i~~~~-~-~~ 70 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTI-------KKIGENAFSNCTSLKSINFPN-------NLTSIGDNAFSNCKSLESITFPN-N-LK 70 (129)
T ss_dssp TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEESS-------TTSCE-TTTTTT-TT-EEEEETS-T-T-
T ss_pred HHhCCCCCCEEEECCCe-------eEeChhhcccccccccccccc-------cccccceeeeecccccccccccc-c-cc
Confidence 45666677777765421 122233366777777777765 233443 3455666677777754 3 33
Q ss_pred ccc-hhhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCC
Q 007979 247 KLP-ETLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNER 289 (582)
Q Consensus 247 ~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~ 289 (582)
.++ ..+..+++|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 333 23556777777777543 334433 34444 666666543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.66 E-value=0.079 Score=25.98 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=3.3
Q ss_pred ccEEecCCCc
Q 007979 258 LEKLDISYCI 267 (582)
Q Consensus 258 L~~L~L~~~~ 267 (582)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444433
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.18 E-value=0.0052 Score=54.20 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=54.4
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
+..++...+||++.| .+..+-..+..+..|..|+++.+. +..+|+.++.+..+..+++..|. ....|.+.++
T Consensus 38 i~~~kr~tvld~~s~------r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k 109 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN------RLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKK 109 (326)
T ss_pred hhccceeeeehhhhh------HHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccc
Confidence 455566666666662 333444555566666667777666 66677777777777777666654 5666777777
Q ss_pred CCCCceeecCCcc
Q 007979 279 LINMKHLLNERTD 291 (582)
Q Consensus 279 l~~L~~L~l~~~~ 291 (582)
++.+++++...+.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 7777777666654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.37 E-value=0.025 Score=50.10 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=75.0
Q ss_pred ccccc-ccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCcc
Q 007979 221 ILDIP-RNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAG 299 (582)
Q Consensus 221 l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 299 (582)
+..+| ..|.....-+.||++.|. +..+-..+..++.|..||++-|. +..+|.+.+.+..++++.+..| .....|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCcc
Confidence 44454 456777888999999998 77777788999999999999887 8889999999999999998777 45788999
Q ss_pred CCCCCCCCccCeee
Q 007979 300 IARLPSLRTLDEFH 313 (582)
Q Consensus 300 i~~l~~L~~L~~~~ 313 (582)
.++.+.++.++.-.
T Consensus 107 ~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKK 120 (326)
T ss_pred ccccCCcchhhhcc
Confidence 99999999887543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.04 E-value=0.4 Score=26.47 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=9.8
Q ss_pred CCccEEecCCCcCccccccc
Q 007979 256 YNLEKLDISYCINLKALPQG 275 (582)
Q Consensus 256 ~~L~~L~L~~~~~l~~lp~~ 275 (582)
++|++|+|++|. +..+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 445555555554 4555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.04 E-value=0.4 Score=26.47 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=9.8
Q ss_pred CCccEEecCCCcCccccccc
Q 007979 256 YNLEKLDISYCINLKALPQG 275 (582)
Q Consensus 256 ~~L~~L~L~~~~~l~~lp~~ 275 (582)
++|++|+|++|. +..+|.+
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 445555555554 4555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.72 E-value=0.51 Score=26.02 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=15.6
Q ss_pred cCCCCEEecCCCCCccccchhh
Q 007979 231 LVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 231 L~~L~~L~L~~~~~~~~lp~~i 252 (582)
|.+|++|+|++|. +..+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4578888888887 77777653
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.72 E-value=0.51 Score=26.02 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=15.6
Q ss_pred cCCCCEEecCCCCCccccchhh
Q 007979 231 LVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 231 L~~L~~L~L~~~~~~~~lp~~i 252 (582)
|.+|++|+|++|. +..+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4578888888887 77777653
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.46 E-value=0.28 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=14.1
Q ss_pred CCCcceEEEeCCcchHHHh
Q 007979 540 TTTLKGLSIWGCDLLEERY 558 (582)
Q Consensus 540 l~~L~~L~i~~C~~l~~~~ 558 (582)
+++|++|++++|+++++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 3678888888888877654
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.74 E-value=1.5 Score=23.57 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=3.2
Q ss_pred CCEEecCCCC
Q 007979 234 LRYLNLSSVT 243 (582)
Q Consensus 234 L~~L~L~~~~ 243 (582)
|++|++++|.
T Consensus 4 L~~L~l~~n~ 13 (24)
T PF13516_consen 4 LETLDLSNNQ 13 (24)
T ss_dssp -SEEE-TSSB
T ss_pred CCEEEccCCc
Confidence 3444444433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.25 E-value=4.3 Score=22.44 Aligned_cols=16 Identities=38% Similarity=0.596 Sum_probs=8.6
Q ss_pred CCCEEecCCCCCccccc
Q 007979 233 HLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp 249 (582)
+|++|++++|. +.++|
T Consensus 3 ~L~~L~vs~N~-Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQ-LTSLP 18 (26)
T ss_pred ccceeecCCCc-cccCc
Confidence 34555555555 55555
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.49 E-value=12 Score=20.78 Aligned_cols=12 Identities=50% Similarity=0.523 Sum_probs=5.8
Q ss_pred CCccEEecCCCc
Q 007979 256 YNLEKLDISYCI 267 (582)
Q Consensus 256 ~~L~~L~L~~~~ 267 (582)
.+|+.|++++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 344555555544
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.79 E-value=17 Score=20.35 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=6.3
Q ss_pred CCCEEecCCCC
Q 007979 233 HLRYLNLSSVT 243 (582)
Q Consensus 233 ~L~~L~L~~~~ 243 (582)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45556666555
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.87 E-value=3.2 Score=42.67 Aligned_cols=126 Identities=22% Similarity=0.142 Sum_probs=73.9
Q ss_pred cccccCCCCceEEEEeCCcCCCCch--hhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCC-CCEEecCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSL--NGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVH-LRYLNLSSV 242 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~-L~~L~L~~~ 242 (582)
...+.....++.++++.|.+..... ....++..+....++++|+++++.++. .....+-..+..... ++.|++..|
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~-~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS-SSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh-HHHHHHHHHHhccchhhHHHHHHhc
Confidence 4445557778888888887642111 111122223357788888888844332 122222233444555 666888888
Q ss_pred CCcc-----ccchhhhcc-CCccEEecCCCcCccc----cccccccCCCCceeecCCccCC
Q 007979 243 TLIR-----KLPETLCEL-YNLEKLDISYCINLKA----LPQGIGKLINMKHLLNERTDSL 293 (582)
Q Consensus 243 ~~~~-----~lp~~i~~L-~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~l~~~~~~ 293 (582)
. ++ .+.+.+..+ ..++++++.+|..... ++..+..+..++.|.+.+|...
T Consensus 244 ~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 244 K-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred C-cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 7 43 233345555 6788999998875443 4445566678888888877543
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.57 E-value=3.4 Score=42.48 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=43.2
Q ss_pred ceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccccc-CCCCEEecCCCCCcc----ccc
Q 007979 175 MRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKL-VHLRYLNLSSVTLIR----KLP 249 (582)
Q Consensus 175 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L-~~L~~L~L~~~~~~~----~lp 249 (582)
+..|.+.+|.+.... ...+-..+.....|..|++++|.+.+ .....+-..+... ..|++|++..|.... .+.
T Consensus 89 l~~L~L~~~~l~~~~--~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRG--AEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccch--HHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 555555555544331 22234445566666666666654442 1222222222222 345556665555221 233
Q ss_pred hhhhccCCccEEecCCCc
Q 007979 250 ETLCELYNLEKLDISYCI 267 (582)
Q Consensus 250 ~~i~~L~~L~~L~L~~~~ 267 (582)
+.+.....|+.++++.|.
T Consensus 166 ~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHhcccchhHHHHHhcc
Confidence 445555666666666665
No 90
>PF14162 YozD: YozD-like protein
Probab=29.63 E-value=70 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHhccCccccc
Q 007979 81 EMDIIGEEYFNILATRSFFQEFK 103 (582)
Q Consensus 81 ~~~~~~~~~~~~L~~~~ll~~~~ 103 (582)
..+++|+-++.+|+.|+++....
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 46889999999999999987543
No 91
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.71 E-value=2.2e+02 Score=18.67 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=30.7
Q ss_pred cCChhhhhHhhhccCCCCCC--cc-CHHHHHHHHHHcCCccCCCcccHHHHHHHHHHHHHhccCc
Q 007979 38 DLPSRVKRCFSYCAVFPKDF--NI-MKEKLISMWMAQGYFSAEQDEEMDIIGEEYFNILATRSFF 99 (582)
Q Consensus 38 ~L~~~~k~cFl~~a~Fp~~~--~i-~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll 99 (582)
+|.+..+..+++++-|..+. -+ +.+.+-..- +.+ +.....++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~----------g~s-~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL----------GVS-RRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH----------CcC-HHHHHHHHHHHHHCcCC
Confidence 57777888888777664221 12 233332211 122 56678899999999875
Done!