Query 007979
Match_columns 582
No_of_seqs 397 out of 3542
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 15:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-29 6E-34 275.5 14.1 394 149-575 268-765 (768)
2 3rgz_A Protein brassinosteroid 99.9 3.2E-28 1.1E-32 265.6 13.2 286 149-467 246-537 (768)
3 4eco_A Uncharacterized protein 99.9 3.3E-28 1.1E-32 259.3 11.8 361 150-553 81-578 (636)
4 4eco_A Uncharacterized protein 99.9 8.8E-28 3E-32 256.0 13.5 328 165-553 239-599 (636)
5 3v47_A TOLL-like receptor 5B a 99.9 4.3E-27 1.5E-31 241.8 16.5 368 148-552 28-406 (455)
6 3vq2_A TLR4, TOLL-like recepto 99.9 9.7E-27 3.3E-31 248.2 17.5 141 147-300 29-173 (606)
7 4ecn_A Leucine-rich repeat pro 99.9 8.3E-27 2.8E-31 252.6 15.9 347 149-553 447-839 (876)
8 4ecn_A Leucine-rich repeat pro 99.9 1.6E-26 5.5E-31 250.3 18.0 336 165-553 440-818 (876)
9 3t6q_A CD180 antigen; protein- 99.9 4.7E-26 1.6E-30 242.9 20.2 281 146-455 29-361 (606)
10 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-25 4.9E-30 234.5 22.2 148 394-552 321-479 (520)
11 2z7x_B TOLL-like receptor 1, v 99.9 7.5E-26 2.6E-30 236.6 18.8 346 148-528 19-479 (520)
12 3t6q_A CD180 antigen; protein- 99.9 1.4E-25 4.8E-30 239.3 19.4 361 161-552 23-460 (606)
13 2z63_A TOLL-like receptor 4, v 99.9 2.9E-26 9.9E-31 242.9 13.7 147 147-306 25-175 (570)
14 3j0a_A TOLL-like receptor 5; m 99.9 4.6E-25 1.6E-29 243.2 23.8 350 148-552 22-437 (844)
15 4fmz_A Internalin; leucine ric 99.9 1.2E-25 4.1E-30 222.3 17.2 301 150-552 44-344 (347)
16 3o6n_A APL1; leucine-rich repe 99.9 1.8E-25 6.1E-30 224.6 17.9 307 170-553 42-351 (390)
17 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-26 1.6E-30 240.1 13.4 371 148-553 24-509 (549)
18 3vq2_A TLR4, TOLL-like recepto 99.9 8.2E-25 2.8E-29 233.3 23.2 143 159-316 20-165 (606)
19 1ziw_A TOLL-like receptor 3; i 99.9 4.7E-25 1.6E-29 238.4 20.6 156 147-315 22-182 (680)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.3E-25 1.8E-29 232.1 19.6 149 394-552 350-508 (562)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.5E-24 8.4E-29 227.0 23.7 164 397-581 331-508 (562)
22 3oja_B Anopheles plasmodium-re 99.9 3.9E-25 1.4E-29 234.3 17.6 306 171-553 49-357 (597)
23 1o6v_A Internalin A; bacterial 99.9 9E-25 3.1E-29 224.7 19.3 337 150-553 46-387 (466)
24 2id5_A Lingo-1, leucine rich r 99.9 5.7E-25 2E-29 227.3 17.4 307 161-528 22-331 (477)
25 3v47_A TOLL-like receptor 5B a 99.9 7.3E-25 2.5E-29 225.2 18.1 366 160-582 20-407 (455)
26 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-24 7.6E-29 237.7 19.7 339 159-552 13-392 (844)
27 2id5_A Lingo-1, leucine rich r 99.9 3.1E-24 1.1E-28 221.8 18.7 300 147-496 29-331 (477)
28 4fcg_A Uncharacterized protein 99.9 2.9E-24 9.9E-29 209.6 16.1 232 201-550 79-310 (328)
29 2z81_A CD282 antigen, TOLL-lik 99.9 2.1E-24 7.1E-29 227.4 16.0 333 149-529 49-509 (549)
30 4fmz_A Internalin; leucine ric 99.9 9.7E-24 3.3E-28 208.6 19.1 280 149-528 65-344 (347)
31 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 3.9E-29 230.5 12.8 132 149-292 51-189 (570)
32 1o6v_A Internalin A; bacterial 99.9 7.8E-24 2.7E-28 217.7 17.8 307 149-536 67-393 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.9 6.7E-23 2.3E-27 208.9 24.5 302 169-551 38-349 (457)
34 3o6n_A APL1; leucine-rich repe 99.9 4E-24 1.4E-28 214.8 15.2 304 149-528 44-350 (390)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-23 5.7E-28 226.3 18.9 270 159-460 13-287 (680)
36 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-24 1.1E-28 208.1 10.0 256 173-534 50-308 (313)
37 3oja_B Anopheles plasmodium-re 99.9 1.3E-23 4.5E-28 222.6 14.5 303 150-528 51-356 (597)
38 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-23 4.2E-28 204.0 12.1 251 150-500 50-306 (313)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-23 1.1E-27 211.3 14.6 273 199-554 38-320 (457)
40 2ft3_A Biglycan; proteoglycan, 99.9 6.2E-23 2.1E-27 201.2 15.0 139 154-311 37-179 (332)
41 4fcg_A Uncharacterized protein 99.9 3.1E-23 1E-27 202.3 11.9 124 172-310 80-212 (328)
42 4g8a_A TOLL-like receptor 4; l 99.9 9.6E-23 3.3E-27 218.8 16.7 368 146-552 48-578 (635)
43 1xku_A Decorin; proteoglycan, 99.9 2.3E-22 7.7E-27 197.1 15.6 135 397-551 192-329 (330)
44 1xku_A Decorin; proteoglycan, 99.9 1.4E-20 4.8E-25 184.3 20.7 292 153-527 34-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 1E-20 3.5E-25 185.4 18.2 250 148-496 52-305 (332)
46 1jl5_A Outer protein YOPM; leu 99.8 3E-20 1E-24 189.2 18.9 136 149-314 90-225 (454)
47 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-20 4E-25 202.6 15.2 139 162-316 43-185 (635)
48 2z66_A Variable lymphocyte rec 99.8 2.8E-21 9.6E-26 187.2 9.2 128 173-311 28-157 (306)
49 3zyi_A Leucine-rich repeat-con 99.8 1.2E-20 4.2E-25 193.1 14.0 144 154-313 58-205 (452)
50 1jl5_A Outer protein YOPM; leu 99.8 1.6E-20 5.5E-25 191.2 13.7 37 149-185 10-46 (454)
51 3zyj_A Leucine-rich repeat-con 99.8 2E-20 6.8E-25 190.8 14.0 145 154-314 47-195 (440)
52 2z80_A TOLL-like receptor 2, v 99.8 6E-21 2E-25 188.8 9.4 103 203-313 52-158 (353)
53 1z7x_W Ribonuclease inhibitor; 99.8 9.2E-23 3.1E-27 209.9 -5.1 375 149-553 2-410 (461)
54 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-19 7.2E-24 188.5 18.5 255 152-553 42-296 (622)
55 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 183.1 10.9 140 159-314 40-184 (353)
56 3zyi_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 182.3 18.3 101 203-310 75-177 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 181.1 18.5 102 203-311 64-167 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-21 1.5E-25 186.4 3.2 136 395-557 167-302 (317)
59 2z66_A Variable lymphocyte rec 99.8 2E-19 7E-24 174.1 14.3 229 147-455 25-259 (306)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-19 3.8E-24 173.9 11.9 61 395-455 175-236 (285)
61 1ozn_A Reticulon 4 receptor; N 99.8 8.3E-20 2.8E-24 174.8 10.7 202 203-496 32-236 (285)
62 3oja_A Leucine-rich immune mol 99.8 2.3E-19 7.9E-24 184.5 13.4 242 195-549 22-270 (487)
63 3ogk_B Coronatine-insensitive 99.8 2E-20 6.9E-25 198.8 3.6 365 150-552 112-524 (592)
64 1wwl_A Monocyte differentiatio 99.8 1.8E-20 6E-25 181.8 2.5 246 170-527 40-306 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1.6E-19 5.4E-24 175.5 8.5 249 170-503 31-280 (317)
66 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-21 5E-26 201.0 -9.2 363 149-552 27-438 (461)
67 3ogk_B Coronatine-insensitive 99.8 1.3E-19 4.3E-24 192.7 5.2 336 171-552 110-499 (592)
68 3g06_A SSPH2 (leucine-rich rep 99.8 7.5E-18 2.6E-22 176.8 18.5 136 396-581 160-295 (622)
69 1wwl_A Monocyte differentiatio 99.7 3.1E-19 1.1E-23 173.0 3.9 234 166-495 58-306 (312)
70 2p1m_B Transport inhibitor res 99.7 3.7E-19 1.3E-23 189.2 3.6 366 149-554 104-519 (594)
71 2xwt_C Thyrotropin receptor; s 99.7 2.3E-17 7.8E-22 153.3 13.2 66 220-289 22-89 (239)
72 3oja_A Leucine-rich immune mol 99.7 3E-18 1E-22 176.2 7.7 241 171-496 32-273 (487)
73 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.2E-22 158.2 11.5 127 173-312 28-157 (276)
74 2ast_B S-phase kinase-associat 99.7 1.7E-18 5.7E-23 170.1 4.4 224 174-495 48-282 (336)
75 1p9a_G Platelet glycoprotein I 99.7 4.7E-17 1.6E-21 155.4 13.9 201 169-455 6-206 (290)
76 1h6u_A Internalin H; cell adhe 99.7 3.3E-17 1.1E-21 158.2 12.2 198 170-463 38-235 (308)
77 2o6q_A Variable lymphocyte rec 99.7 9.5E-17 3.2E-21 152.0 14.7 120 174-310 17-139 (270)
78 1h6u_A Internalin H; cell adhe 99.7 4.4E-17 1.5E-21 157.3 12.4 197 199-502 37-233 (308)
79 1p9a_G Platelet glycoprotein I 99.7 6.3E-17 2.2E-21 154.5 12.6 196 150-432 10-206 (290)
80 3rfs_A Internalin B, repeat mo 99.7 8.2E-17 2.8E-21 152.6 12.7 101 200-310 38-139 (272)
81 2z62_A TOLL-like receptor 4, v 99.7 5.7E-17 2E-21 154.2 11.1 54 401-455 181-235 (276)
82 4ay9_X Follicle-stimulating ho 99.7 1.9E-16 6.5E-21 155.9 14.9 100 397-526 154-255 (350)
83 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.8E-21 154.9 12.5 229 171-495 62-304 (310)
84 3rfs_A Internalin B, repeat mo 99.7 6.2E-17 2.1E-21 153.4 10.2 204 168-463 36-241 (272)
85 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 8.7E-21 149.0 13.8 61 395-455 155-216 (270)
86 2ca6_A RAN GTPase-activating p 99.7 2.8E-18 9.7E-23 171.8 0.2 146 164-311 23-194 (386)
87 2xwt_C Thyrotropin receptor; s 99.7 2.5E-16 8.5E-21 146.3 13.3 207 245-554 23-239 (239)
88 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.6E-21 157.8 10.8 62 398-461 178-240 (350)
89 2ast_B S-phase kinase-associat 99.7 2.8E-18 9.5E-23 168.5 -0.9 253 202-559 46-310 (336)
90 4glp_A Monocyte differentiatio 99.7 1.6E-16 5.3E-21 153.8 9.2 226 202-527 63-304 (310)
91 2p1m_B Transport inhibitor res 99.7 6.6E-18 2.3E-22 179.6 -0.8 340 170-553 102-493 (594)
92 2ca6_A RAN GTPase-activating p 99.6 3.9E-18 1.3E-22 170.7 -4.3 223 195-455 24-285 (386)
93 3goz_A Leucine-rich repeat-con 99.6 2.5E-17 8.5E-22 163.2 -1.1 65 391-455 189-264 (362)
94 3m19_A Variable lymphocyte rec 99.6 8.9E-15 3.1E-19 136.7 14.4 175 204-455 15-190 (251)
95 1h6t_A Internalin B; cell adhe 99.6 3.2E-15 1.1E-19 142.8 10.9 62 395-460 154-215 (291)
96 3goz_A Leucine-rich repeat-con 99.6 8E-17 2.7E-21 159.5 -1.9 265 178-528 3-295 (362)
97 2a5y_B CED-4; apoptosis; HET: 99.6 5.7E-16 1.9E-20 161.5 2.4 100 25-132 360-473 (549)
98 3m19_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 134.8 12.2 176 232-496 14-190 (251)
99 1m9s_A Internalin B; cell inva 99.6 1.6E-14 5.3E-19 151.4 13.0 64 394-461 150-213 (605)
100 1h6t_A Internalin B; cell adhe 99.5 1.9E-14 6.4E-19 137.5 10.9 80 395-496 132-211 (291)
101 4ezg_A Putative uncharacterize 99.5 4.3E-14 1.5E-18 126.7 12.3 150 149-315 43-192 (197)
102 1m9s_A Internalin B; cell inva 99.5 3.8E-14 1.3E-18 148.5 12.7 174 228-501 39-212 (605)
103 1xeu_A Internalin C; cellular 99.5 1.4E-14 4.7E-19 136.2 7.1 172 201-461 17-188 (263)
104 4ezg_A Putative uncharacterize 99.5 3.5E-14 1.2E-18 127.3 8.1 64 227-290 83-146 (197)
105 3cvr_A Invasion plasmid antige 99.5 9.5E-14 3.3E-18 143.8 12.3 89 204-312 60-148 (571)
106 2o6s_A Variable lymphocyte rec 99.4 2E-13 7E-18 123.5 8.2 126 172-311 27-155 (208)
107 3cvr_A Invasion plasmid antige 99.4 3.7E-13 1.3E-17 139.4 10.9 40 398-438 208-247 (571)
108 3e6j_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 123.5 9.9 140 159-314 28-169 (229)
109 2v9t_B SLIT homolog 2 protein 99.4 3E-13 1E-17 123.3 8.6 140 160-314 21-162 (220)
110 2o6s_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 118.8 11.7 64 394-463 121-184 (208)
111 1dce_A Protein (RAB geranylger 99.4 4.5E-15 1.5E-19 154.6 -5.4 200 170-451 346-567 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.1E-17 119.3 11.2 148 154-314 15-163 (220)
113 2ell_A Acidic leucine-rich nuc 99.4 6.7E-13 2.3E-17 115.6 8.6 132 172-317 23-160 (168)
114 2v9t_B SLIT homolog 2 protein 99.4 3.5E-12 1.2E-16 116.2 12.8 69 220-291 22-91 (220)
115 2je0_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 114.4 5.1 126 172-311 16-147 (149)
116 2ell_A Acidic leucine-rich nuc 99.4 1.7E-12 5.8E-17 113.0 8.9 134 149-298 23-164 (168)
117 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7E-17 139.0 11.0 157 149-316 172-328 (727)
118 3e6j_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 114.8 12.7 133 147-293 37-172 (229)
119 2v70_A SLIT-2, SLIT homolog 2 99.3 5E-12 1.7E-16 115.2 10.7 135 147-293 29-166 (220)
120 2xot_A Amphoterin-induced prot 99.3 2.6E-12 9.1E-17 126.8 9.3 59 395-455 134-200 (361)
121 1xeu_A Internalin C; cellular 99.3 9.6E-12 3.3E-16 116.7 12.5 143 150-315 41-183 (263)
122 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.7E-17 113.1 7.0 130 168-315 14-151 (176)
123 2je0_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 108.1 7.0 126 149-289 16-149 (149)
124 2xot_A Amphoterin-induced prot 99.3 4.3E-12 1.5E-16 125.2 7.7 126 174-313 40-172 (361)
125 3sb4_A Hypothetical leucine ri 99.3 4.1E-11 1.4E-15 116.6 13.7 288 172-547 24-327 (329)
126 1w8a_A SLIT protein; signaling 99.2 3.3E-11 1.1E-15 107.2 9.7 107 174-291 30-137 (192)
127 4b8c_D Glucose-repressible alc 99.2 8E-12 2.7E-16 134.4 5.8 121 165-300 216-336 (727)
128 1dce_A Protein (RAB geranylger 99.2 2.4E-11 8.2E-16 126.5 9.2 139 167-317 403-546 (567)
129 1w8a_A SLIT protein; signaling 99.2 2.3E-11 7.9E-16 108.2 7.4 124 176-314 11-136 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.2E-16 106.5 6.6 127 149-292 18-152 (176)
131 2wfh_A SLIT homolog 2 protein 99.2 6.6E-11 2.3E-15 105.2 8.6 99 204-311 32-133 (193)
132 2wfh_A SLIT homolog 2 protein 99.2 8.8E-11 3E-15 104.4 9.2 122 155-292 15-138 (193)
133 1vt4_I APAF-1 related killer D 99.1 4E-11 1.4E-15 127.9 6.5 94 6-124 343-437 (1221)
134 1ds9_A Outer arm dynein; leuci 99.1 5.7E-13 1.9E-17 119.4 -7.0 130 164-310 39-180 (198)
135 2o6r_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 100.6 9.1 106 173-292 28-136 (177)
136 3sb4_A Hypothetical leucine ri 99.1 9.4E-11 3.2E-15 114.1 6.9 265 202-551 24-307 (329)
137 1ds9_A Outer arm dynein; leuci 99.0 2.9E-12 9.9E-17 114.8 -6.2 109 195-314 40-150 (198)
138 3sfz_A APAF-1, apoptotic pepti 99.0 3.6E-10 1.2E-14 130.6 8.0 91 26-130 362-452 (1249)
139 2o6r_A Variable lymphocyte rec 99.0 3.4E-09 1.1E-13 92.8 11.2 122 175-314 9-134 (177)
140 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 92.6 9.1 99 176-291 15-116 (174)
141 4fdw_A Leucine rich hypothetic 98.9 6.7E-08 2.3E-12 96.0 19.5 237 199-550 132-379 (401)
142 3g39_A Variable lymphocyte rec 98.9 4.5E-09 1.5E-13 91.2 9.0 81 203-291 30-113 (170)
143 2r9u_A Variable lymphocyte rec 98.9 2.5E-09 8.4E-14 93.1 7.1 110 153-278 15-126 (174)
144 3g39_A Variable lymphocyte rec 98.8 5.7E-09 1.9E-13 90.5 7.4 102 205-315 11-113 (170)
145 4fdw_A Leucine rich hypothetic 98.8 1.4E-07 4.8E-12 93.7 16.5 106 166-290 129-236 (401)
146 1z6t_A APAF-1, apoptotic prote 98.7 1.3E-08 4.5E-13 107.4 7.8 88 26-127 362-449 (591)
147 4fs7_A Uncharacterized protein 98.7 2E-07 7E-12 92.8 14.5 307 166-549 64-374 (394)
148 2ifg_A High affinity nerve gro 98.6 6.8E-08 2.3E-12 94.6 8.2 86 199-291 27-114 (347)
149 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.3E-12 92.0 8.5 100 207-315 12-114 (347)
150 3un9_A NLR family member X1; l 98.5 2.2E-08 7.7E-13 98.4 1.0 114 172-291 71-194 (372)
151 4fs7_A Uncharacterized protein 98.4 6.8E-06 2.3E-10 81.7 16.6 282 198-549 66-351 (394)
152 3un9_A NLR family member X1; l 98.4 5E-08 1.7E-12 96.0 1.0 135 173-314 101-249 (372)
153 1io0_A Tropomodulin; LRR prote 98.4 3.4E-07 1.2E-11 80.4 5.4 120 168-291 31-162 (185)
154 2ra8_A Uncharacterized protein 98.3 8E-07 2.7E-11 86.6 5.9 62 248-312 164-227 (362)
155 3e4g_A ATP synthase subunit S, 98.2 1.9E-07 6.5E-12 79.6 1.0 67 483-556 83-154 (176)
156 4gt6_A Cell surface protein; l 98.1 7.5E-05 2.6E-09 74.2 16.6 307 167-552 57-368 (394)
157 3e4g_A ATP synthase subunit S, 98.1 5.7E-07 1.9E-11 76.7 0.4 88 397-500 61-154 (176)
158 1io0_A Tropomodulin; LRR prote 98.0 1.5E-06 5.3E-11 76.1 2.4 120 192-313 25-160 (185)
159 3rw6_A Nuclear RNA export fact 98.0 1E-05 3.4E-10 74.6 7.0 63 200-267 167-231 (267)
160 2ra8_A Uncharacterized protein 97.9 1.9E-05 6.6E-10 76.8 8.4 134 150-290 172-317 (362)
161 3rw6_A Nuclear RNA export fact 97.8 1.8E-05 6.2E-10 72.9 4.8 81 229-311 167-258 (267)
162 4h09_A Hypothetical leucine ri 97.7 0.00017 5.9E-09 71.1 11.4 67 394-464 237-305 (379)
163 4gt6_A Cell surface protein; l 97.5 0.00057 1.9E-08 67.8 11.8 303 166-549 80-386 (394)
164 4h09_A Hypothetical leucine ri 97.4 0.0012 4E-08 65.1 12.8 112 358-502 235-348 (379)
165 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0039 1.3E-07 54.1 4.9 117 170-290 38-167 (197)
166 1pgv_A TMD-1, tropomodulin TMD 95.0 0.026 9E-07 48.8 5.1 96 193-290 31-136 (197)
167 3rfe_A Platelet glycoprotein I 93.4 0.13 4.4E-06 41.3 5.7 34 233-267 32-66 (130)
168 3rfe_A Platelet glycoprotein I 91.6 0.25 8.6E-06 39.6 5.3 53 235-291 11-66 (130)
169 2lz0_A Uncharacterized protein 20.9 1.2E+02 0.0042 22.3 4.4 14 513-526 39-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.7e-29 Score=275.50 Aligned_cols=394 Identities=18% Similarity=0.150 Sum_probs=258.0
Q ss_pred CcceeEEEEEecCCC-cccccccCC-CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGA-SFPVSTCRI-KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~-~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
...++++.+..+... .+|..+... ++|+.|++++|.+... .|..|..+++|++|++++|.+.+ .+|.
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~-----~ip~ 336 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSG-----ELPM 336 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC------CCGGGGGCTTCCEEECCSSEEEE-----ECCH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc------cchHHhcCCCccEEECCCCcccC-----cCCH
Confidence 466788888777654 567666654 8999999999875422 45558889999999999854432 5675
Q ss_pred c-ccccCCCCEEecCCCCCccccchhhhccC-CccEEecCCCcCcccccccccc--CCCCceeecCCccCCCcCCccCCC
Q 007979 227 N-IEKLVHLRYLNLSSVTLIRKLPETLCELY-NLEKLDISYCINLKALPQGIGK--LINMKHLLNERTDSLGHMPAGIAR 302 (582)
Q Consensus 227 ~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--l~~L~~L~l~~~~~~~~~p~~i~~ 302 (582)
. ++.+++|++|++++|.+.+.+|..+.++. +|++|++++|.....+|..+.. +++|++|++.+|.....+|..++.
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 5 88899999999999986668888888887 8999999998866667777766 788999999988777788888888
Q ss_pred CCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCc
Q 007979 303 LPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRK 382 (582)
Q Consensus 303 l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 382 (582)
+++|++|++..+... +..+..+..+++|+.|....+...+.++. .+..++.|+.|++..+...
T Consensus 417 l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L~~N~l~------ 479 (768)
T 3rgz_A 417 CSELVSLHLSFNYLS----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------ELMYVKTLETLILDFNDLT------ 479 (768)
T ss_dssp CTTCCEEECCSSEEE----SCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCC------
T ss_pred CCCCCEEECcCCccc----CcccHHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCceEEEecCCccc------
Confidence 889998887655332 22344455555544444333333222222 3556778888888765432
Q ss_pred cchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeC
Q 007979 383 NEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVG 461 (582)
Q Consensus 383 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~ 461 (582)
...+..+..+++|+.|++++|.+....|.+++.+++|+.|++++|...+.+|. ++.+++|+.|++++|.....+|
T Consensus 480 ----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 480 ----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp ----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred ----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 12345567788899999999988866688999999999999999988777775 8888999999999888555677
Q ss_pred ccccCCCCCCCC-----------------------------------------------------CCCCCcccccCcccc
Q 007979 462 NEILGIESDHHD-----------------------------------------------------SSSSSSVIIAFPKLQ 488 (582)
Q Consensus 462 ~~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~L~ 488 (582)
..++........ ..........+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 655432110000 000011223345555
Q ss_pred ccccccccccc-ccccC---------------cccCCCC-CCcccccccceecccccccccCCcCCCCCCCcceEEEeCC
Q 007979 489 SLFIEDLPELE-EWDYG---------------ITRTGHP-FIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 489 ~L~l~~~~~L~-~l~~~---------------~~~~~~~-~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C 551 (582)
+|+++++ ++. .+|.. .....+| .++.+++|+.|++++|.--..+|..+..+++|+.|++++|
T Consensus 636 ~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 5555443 121 11100 0011222 3668889999999986655578888888899999998875
Q ss_pred cch-----------------------H----HHhcCCCCCCCCccCCcCce
Q 007979 552 DLL-----------------------E----ERYRKGEGEDWPKISHIPNI 575 (582)
Q Consensus 552 ~~l-----------------------~----~~~~~~~~~~~~~i~~i~~~ 575 (582)
+-- . ..|....+++|++++|+|.+
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 321 0 14677889999999999965
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.2e-28 Score=265.59 Aligned_cols=286 Identities=19% Similarity=0.184 Sum_probs=221.9
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHcc-CCceeEEEeCCCcccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGK-LTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
...++.+.+..+......+.. .+++|++|++++|.+... +|..+.. +++|++|++++|.+.+ .+|..
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~------ip~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~ 313 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGE------IPDFLSGACDTLTGLDLSGNHFYG-----AVPPF 313 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEES------CCCCSCTTCTTCSEEECCSSEEEE-----CCCGG
T ss_pred CCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCc------cCHHHHhhcCcCCEEECcCCcCCC-----ccchH
Confidence 466888888877665322233 889999999999986421 3333444 5999999999955443 67889
Q ss_pred ccccCCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCccccccccccCC-CCceeecCCccCCCcCCccCCC--C
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGKLI-NMKHLLNERTDSLGHMPAGIAR--L 303 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~--l 303 (582)
++.+++|++|++++|.+.+.+|.. ++++++|++|++++|.....+|..+..++ +|++|++++|...+.+|..+.. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 999999999999999966689976 99999999999999986668999999887 9999999999887778887766 8
Q ss_pred CCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCcc
Q 007979 304 PSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKN 383 (582)
Q Consensus 304 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 383 (582)
++|++|++..+... +..+..+..+++|+.|....+...+.++. .+..++.|+.|++..+...
T Consensus 394 ~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~L~~n~l~------- 455 (768)
T 3rgz_A 394 NTLQELYLQNNGFT----GKIPPTLSNCSELVSLHLSFNYLSGTIPS-------SLGSLSKLRDLKLWLNMLE------- 455 (768)
T ss_dssp CCCCEEECCSSEEE----EECCGGGGGCTTCCEEECCSSEEESCCCG-------GGGGCTTCCEEECCSSCCC-------
T ss_pred CCccEEECCCCccc----cccCHHHhcCCCCCEEECcCCcccCcccH-------HHhcCCCCCEEECCCCccc-------
Confidence 89999987665432 22344555666666555544444333332 4567889999999866533
Q ss_pred chHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCc
Q 007979 384 EHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGN 462 (582)
Q Consensus 384 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~ 462 (582)
..++..+..+++|++|++++|.+....|.++..+++|+.|++++|...+.+|. ++.+++|++|++++|...+.+|.
T Consensus 456 ---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 456 ---GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp ---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred ---CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 22345677789999999999999877699999999999999999998877776 88999999999999996667777
Q ss_pred cccCC
Q 007979 463 EILGI 467 (582)
Q Consensus 463 ~~~~~ 467 (582)
.+...
T Consensus 533 ~l~~l 537 (768)
T 3rgz_A 533 ELGDC 537 (768)
T ss_dssp GGGGC
T ss_pred HHcCC
Confidence 66543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.3e-28 Score=259.29 Aligned_cols=361 Identities=14% Similarity=0.115 Sum_probs=222.7
Q ss_pred cceeEEEEEecCC-CcccccccCCCCceEEEEeCCcCC------C-----------------------------------
Q 007979 150 EKVCHLMLVIGLG-ASFPVSTCRIKRMRSLFISGNMLD------N----------------------------------- 187 (582)
Q Consensus 150 ~~~~~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~------~----------------------------------- 187 (582)
.+++.+.+.++.. +.+|..+.++++|++|++++|.+. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4577777766654 367889999999999999998540 0
Q ss_pred --------------------------------CchhhhhHHHHHccCCceeEEEeCCCccccc-ccc-----------cc
Q 007979 188 --------------------------------SSLNGKMLKELFGKLTSLRALDIGNWSATLC-SSI-----------LD 223 (582)
Q Consensus 188 --------------------------------~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~~l-----------~~ 223 (582)
..+.+ +|..|+++++|++|+|++|.+++. ... ..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 01112 455688999999999999554430 000 01
Q ss_pred cccccc--ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCc-Ccc-ccccccccC------CCCceeecCCccCC
Q 007979 224 IPRNIE--KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCI-NLK-ALPQGIGKL------INMKHLLNERTDSL 293 (582)
Q Consensus 224 lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~-~l~-~lp~~i~~l------~~L~~L~l~~~~~~ 293 (582)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. ... .+|..++.+ ++|++|++++|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899988 99999999999999888999999999999999999997 444 689888877 99999999999655
Q ss_pred CcCCc--cCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCC-cceEEE
Q 007979 294 GHMPA--GIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKY-LSCLRL 370 (582)
Q Consensus 294 ~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l 370 (582)
.+|. .++.+++|++|++..+... +..+ .+..+++|+.|....+... .++. .+..++. |+.|++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~----g~ip-~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~~L~~L~L 384 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLE----GKLP-AFGSEIKLASLNLAYNQIT-EIPA-------NFCGFTEQVENLSF 384 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCE----EECC-CCEEEEEESEEECCSSEEE-ECCT-------TSEEECTTCCEEEC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCc----cchh-hhCCCCCCCEEECCCCccc-cccH-------hhhhhcccCcEEEc
Confidence 8888 8999999999987655433 1223 3444444444433222211 1221 2444455 666665
Q ss_pred EeeecCCCCCC---------------ccchHHHHHhhCC-------CCCCCcEEEEeeEeCCCcCCch-hhcCcCCcEEE
Q 007979 371 WFDVKESGGRR---------------KNEHDQLLLEALQ-------PPLNLKELFIGSYGGNTVSPSW-MMSLTNLRSLN 427 (582)
Q Consensus 371 ~~~~~~~~~~~---------------~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~ 427 (582)
+.+........ .+......+..+. .+++|++|++++|.+..+ |.. +..+++|+.|+
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSIN 463 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEE
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEE
Confidence 54432100000 0000011112222 334555555555555544 332 33455555555
Q ss_pred EeCCCCCCcCCC--CC-------CCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccc
Q 007979 428 LHLCENCEQLPP--LG-------KLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPEL 498 (582)
Q Consensus 428 l~~~~~~~~l~~--l~-------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 498 (582)
+++|... .+|. +. .+++|++|++++|. ++.+|..++. ..+++|+.|+++++ ++
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~---------------~~l~~L~~L~Ls~N-~l 525 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRA---------------TTLPYLVGIDLSYN-SF 525 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGST---------------TTCTTCCEEECCSS-CC
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhhhh---------------ccCCCcCEEECCCC-CC
Confidence 5555444 3332 11 11255555555554 4444433210 15677888888777 45
Q ss_pred cccccCcccCCCCCCcccccccceeccc------ccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 499 EEWDYGITRTGHPFIDIMPRLSALAIAV------CPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 499 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~------C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
+.++.. +..+++|+.|++++ +.....+|..+..+++|++|++++|.-
T Consensus 526 ~~ip~~--------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 526 SKFPTQ--------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCCG--------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcChh--------hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 544332 34788888888853 444556787788888888888888864
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.8e-28 Score=256.05 Aligned_cols=328 Identities=14% Similarity=0.144 Sum_probs=196.4
Q ss_pred cccccc--CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccc--ccccccccc------CCC
Q 007979 165 FPVSTC--RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSIL--DIPRNIEKL------VHL 234 (582)
Q Consensus 165 ~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~--~lp~~i~~L------~~L 234 (582)
+|..+. ++++|++|++++|.+... +|..|.++++|++|++++|. .+. .+|..++.+ ++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~-----~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTK------LPTFLKALPEMQLINVACNR-----GISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSS------CCTTTTTCSSCCEEECTTCT-----TSCHHHHHHHHHHHHHSGGGGTC
T ss_pred CchhhhhcccCCCCEEEecCCcCCcc------ChHHHhcCCCCCEEECcCCC-----CCccccchHHHHhhhccccCCCC
Confidence 555555 666666666666654321 33445666666666666632 122 255555554 666
Q ss_pred CEEecCCCCCccccch--hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCC-CCccCe
Q 007979 235 RYLNLSSVTLIRKLPE--TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPS-LRTLDE 311 (582)
Q Consensus 235 ~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~ 311 (582)
++|++++|. +..+|. .++++++|++|++++|.....+| .++.+++|++|++++|... .+|..+..+++ |++|++
T Consensus 308 ~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 308 QIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred CEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 666666666 346665 56666666666666665333566 5666666666666666433 56666666666 666665
Q ss_pred eeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccC-------CCCCcceEEEEeeecCCCCCCccc
Q 007979 312 FHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLD-------KKKYLSCLRLWFDVKESGGRRKNE 384 (582)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~ 384 (582)
..+.... .+..+..+ .+.+|+.+.+....-... ....+. .+..|+.|+++.+....
T Consensus 385 s~N~l~~-----lp~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~------- 447 (636)
T 4eco_A 385 AHNKLKY-----IPNIFDAK-SVSVMSAIDFSYNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISK------- 447 (636)
T ss_dssp CSSCCSS-----CCSCCCTT-CSSCEEEEECCSSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCS-------
T ss_pred cCCcCcc-----cchhhhhc-ccCccCEEECcCCcCCCc----chhhhcccccccccCCCCCEEECcCCccCc-------
Confidence 5443321 12112111 111233333322111000 001122 45577888877654321
Q ss_pred hHHHHHh-hCCCCCCCcEEEEeeEeCCCcCCchhh-cC-------cCCcEEEEeCCCCCCcCCC-CC--CCCCcceeecc
Q 007979 385 HDQLLLE-ALQPPLNLKELFIGSYGGNTVSPSWMM-SL-------TNLRSLNLHLCENCEQLPP-LG--KLPSLEKLYIS 452 (582)
Q Consensus 385 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l-------~~L~~L~l~~~~~~~~l~~-l~--~l~~L~~L~L~ 452 (582)
++. .+..+++|++|++++|.+..+ |..+. .. ++|+.|++++|... .+|. +. .+++|++|+|+
T Consensus 448 ----lp~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 448 ----FPKELFSTGSPLSSINLMGNMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp ----CCTHHHHTTCCCSEEECCSSCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred ----CCHHHHccCCCCCEEECCCCCCCCc-CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 111 233578999999999999876 65433 22 39999999999777 5554 55 89999999999
Q ss_pred cccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCC-CCcccccccceecccccccc
Q 007979 453 DMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHP-FIDIMPRLSALAIAVCPKLK 531 (582)
Q Consensus 453 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~-~~~~~~~L~~L~l~~C~~L~ 531 (582)
+|. ++.+|..+ ..+++|+.|++++++.+.. ......+| .+..+++|+.|++++|. ++
T Consensus 522 ~N~-l~~ip~~~-----------------~~l~~L~~L~Ls~N~~ls~---N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 522 YNS-FSKFPTQP-----------------LNSSTLKGFGIRNQRDAQG---NRTLREWPEGITLCPSLTQLQIGSND-IR 579 (636)
T ss_dssp SSC-CSSCCCGG-----------------GGCSSCCEEECCSCBCTTC---CBCCCCCCTTGGGCSSCCEEECCSSC-CC
T ss_pred CCC-CCCcChhh-----------------hcCCCCCEEECCCCccccc---CcccccChHHHhcCCCCCEEECCCCc-CC
Confidence 998 55576653 3789999999976542110 00011112 35689999999999965 59
Q ss_pred cCCcCCCCCCCcceEEEeCCcc
Q 007979 532 ALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 532 ~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
.+|..+. ++|+.|++++|+.
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTT
T ss_pred ccCHhHh--CcCCEEECcCCCC
Confidence 9998764 8999999999975
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4.3e-27 Score=241.84 Aligned_cols=368 Identities=15% Similarity=0.059 Sum_probs=247.2
Q ss_pred CCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
.+..++++.+.++.+..+ +..+.++++|++|++++|.+.. .+.+..|.++++|++|+|++|.+.+ ..|.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-----~i~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~ 97 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL-----VIRNNTFRGLSSLIILKLDYNQFLQ-----LETG 97 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC-----EECTTTTTTCTTCCEEECTTCTTCE-----ECTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc-----eECcccccccccCCEEeCCCCccCc-----cChh
Confidence 567889999988877765 6678899999999999987532 2234558889999999999844332 3477
Q ss_pred cccccCCCCEEecCCCCCccccchh--hhccCCccEEecCCCcCccccccc-cccCCCCceeecCCccCCCcCCccCCCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLPET--LCELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTDSLGHMPAGIARL 303 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l 303 (582)
.++++++|++|++++|.+.+.+|.. ++++++|++|++++|......|.. ++.+++|++|++++|......|..+..+
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 8889999999999999855555655 888999999999998844444655 7889999999999987766666666554
Q ss_pred --CCCCccCeeeecCCCCcCCCCc-cccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCC
Q 007979 304 --PSLRTLDEFHVSGGEGVDGRKG-CRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGR 380 (582)
Q Consensus 304 --~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 380 (582)
.+|+.|++..+........... .....+..+..|+.+++....-..... ...........++.|.+..+.......
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA-KRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH-HHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch-hhhhccccccceeeEeecccccccccc
Confidence 4666666544433221110000 001112233445555444332111111 111112233566777665432111000
Q ss_pred CccchHHHHHhhC--CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC-CCCCCCCcceeecccccCc
Q 007979 381 RKNEHDQLLLEAL--QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP-PLGKLPSLEKLYISDMKSV 457 (582)
Q Consensus 381 ~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l 457 (582)
............+ ...++|++|++++|.+....|.++..+++|+.|++++|...+..| .++.+++|++|++++|. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-c
Confidence 0000000000001 124689999999999988878899999999999999998877666 48899999999999997 6
Q ss_pred eEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCc-C
Q 007979 458 KRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPD-H 536 (582)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~-~ 536 (582)
+.++...+ ..+++|++|+++++ +++.+.... +..+++|+.|++++| .++.+|. .
T Consensus 336 ~~~~~~~~----------------~~l~~L~~L~Ls~N-~l~~~~~~~-------~~~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 336 GSIDSRMF----------------ENLDKLEVLDLSYN-HIRALGDQS-------FLGLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp CEECGGGG----------------TTCTTCCEEECCSS-CCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCcChhHh----------------cCcccCCEEECCCC-cccccChhh-------ccccccccEEECCCC-ccccCCHhH
Confidence 66654433 37899999999998 566654322 448999999999995 6788875 4
Q ss_pred CCCCCCcceEEEeCCc
Q 007979 537 IHQTTTLKGLSIWGCD 552 (582)
Q Consensus 537 ~~~l~~L~~L~i~~C~ 552 (582)
+..+++|++|+++++|
T Consensus 391 ~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEEccCCC
Confidence 6789999999998754
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=9.7e-27 Score=248.22 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=109.3
Q ss_pred CCCcceeEEEEEecCCCcccc-cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-
Q 007979 147 SLDEKVCHLMLVIGLGASFPV-STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI- 224 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l- 224 (582)
.++..++++.+.++....++. .+.++++|++|++++|.+.. +.|..|.++++|++|+|++| .+..+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------i~~~~~~~l~~L~~L~Ls~n------~l~~~~ 96 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET------IEDKAWHGLHHLSNLILTGN------PIQSFS 96 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTC------CCCCCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc------cCHHHhhchhhcCEeECCCC------cccccC
Confidence 356788999998888776654 78899999999999997543 24555889999999999984 44444
Q ss_pred cccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCcc-ccccccccCCCCceeecCCccCCCcCCccC
Q 007979 225 PRNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLK-ALPQGIGKLINMKHLLNERTDSLGHMPAGI 300 (582)
Q Consensus 225 p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i 300 (582)
|..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..+
T Consensus 97 p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp TTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred hhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 7888999999999999998 54444 678899999999999987433 478889999999999998886544334333
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=8.3e-27 Score=252.56 Aligned_cols=347 Identities=12% Similarity=0.110 Sum_probs=247.1
Q ss_pred CcceeEEEEEecCCCc------------------cccccc--CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEE
Q 007979 149 DEKVCHLMLVIGLGAS------------------FPVSTC--RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRAL 208 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L 208 (582)
...++.+.+.++.... +|..+. ++++|+.|++++|.+... +|..|.++++|++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~------iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ------LPDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS------CCGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc------ChHHHhCCCCCCEE
Confidence 4678999999988776 888877 999999999999975432 45668999999999
Q ss_pred EeCCCc-cccccccccccccccccC-------CCCEEecCCCCCccccch--hhhccCCccEEecCCCcCcccccccccc
Q 007979 209 DIGNWS-ATLCSSILDIPRNIEKLV-------HLRYLNLSSVTLIRKLPE--TLCELYNLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 209 ~L~~~~-~~~~~~l~~lp~~i~~L~-------~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
+|++|. +++ ..+|..++.+. +|++|++++|. +..+|. .++++++|++|++++|. +..+| .++.
T Consensus 521 ~Ls~N~~lsg----~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~ 593 (876)
T 4ecn_A 521 NIACNRGISA----AQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT 593 (876)
T ss_dssp ECTTCTTSCH----HHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred ECcCCCCccc----ccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence 999954 321 03677666665 99999999999 669998 89999999999999998 55899 7999
Q ss_pred CCCCceeecCCccCCCcCCccCCCCCC-CCccCeeeecCCCCcCCCCcccccccc--CCCccCeeeeeecCCCCChhHHH
Q 007979 279 LINMKHLLNERTDSLGHMPAGIARLPS-LRTLDEFHVSGGEGVDGRKGCRLESLK--NMELLQVCGIRRLGNVSDVDEAK 355 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~l~~~~~~~~~~~~~~~ 355 (582)
+++|++|++++|... .+|..+..+++ |+.|++..+.... .+..+..+. +|+.|....+...+.++... .
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--~ 665 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--C 665 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS--S
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCCCccccch--h
Confidence 999999999999654 89988999998 9999987665432 222222222 13333333332222222211 0
Q ss_pred hcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh-hCCCCCCCcEEEEeeEeCCCcCCchhhc--------CcCCcEE
Q 007979 356 RLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE-ALQPPLNLKELFIGSYGGNTVSPSWMMS--------LTNLRSL 426 (582)
Q Consensus 356 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~~L 426 (582)
........+|+.|+++.+... .++. .+..+++|+.|+|++|.+..+ |.++.. +++|+.|
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~-----------~lp~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQ-----------KFPTELFATGSPISTIILSNNLMTSI-PENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCC-----------SCCHHHHHTTCCCSEEECCSCCCSCC-CTTSSSCTTSCCTTGGGCCEE
T ss_pred hhccccCCCcCEEEccCCcCC-----------ccCHHHHccCCCCCEEECCCCcCCcc-ChHHhccccccccccCCccEE
Confidence 011113347888888765432 1122 223678899999999988866 665443 3389999
Q ss_pred EEeCCCCCCcCCC-CC--CCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCccccccccccccccccccc
Q 007979 427 NLHLCENCEQLPP-LG--KLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDY 503 (582)
Q Consensus 427 ~l~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 503 (582)
+|++|... .+|. +. .+++|+.|+|++|. ++.+|..+ ..+++|+.|+|++++.+..
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l-----------------~~L~~L~~L~Ls~N~~ls~--- 791 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQP-----------------LNSSQLKAFGIRHQRDAEG--- 791 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG-----------------GGCTTCCEEECCCCBCTTC---
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhh-----------------hcCCCCCEEECCCCCCccc---
Confidence 99999766 5554 54 89999999999987 55566543 3789999999987642211
Q ss_pred CcccCCCC-CCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 504 GITRTGHP-FIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 504 ~~~~~~~~-~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
......+| .+..+++|+.|++++|. +..+|..+. ++|+.|++++|+.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCC
Confidence 00011122 35689999999999975 589998764 6999999999975
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.6e-26 Score=250.29 Aligned_cols=336 Identities=13% Similarity=0.162 Sum_probs=246.7
Q ss_pred ccccccCCCCceEEEEeCCcCCCCchh-----------hhhHHHHHc--cCCceeEEEeCCCcccccccccccccccccc
Q 007979 165 FPVSTCRIKRMRSLFISGNMLDNSSLN-----------GKMLKELFG--KLTSLRALDIGNWSATLCSSILDIPRNIEKL 231 (582)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~l~~~~~~-----------~~~~~~~~~--~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 231 (582)
+|..+.++++|+.|++++|.+....+. ...+|..+. ++++|++|+|++|.+ ...+|..++++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-----~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-----MTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-----CCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-----CccChHHHhCC
Confidence 688899999999999999987641000 001444455 999999999999543 44789999999
Q ss_pred CCCCEEecCCCC-Ccc-ccchhhhccC-------CccEEecCCCcCcccccc--ccccCCCCceeecCCccCCCcCCccC
Q 007979 232 VHLRYLNLSSVT-LIR-KLPETLCELY-------NLEKLDISYCINLKALPQ--GIGKLINMKHLLNERTDSLGHMPAGI 300 (582)
Q Consensus 232 ~~L~~L~L~~~~-~~~-~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~i 300 (582)
++|++|++++|. +.+ .+|..++++. +|++|++++|. +..+|. .++++++|++|++++|... .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 999999999998 555 7998888776 99999999998 559998 8999999999999999755 888 88
Q ss_pred CCCCCCCccCeeeecCCCCcCCCCccccccccC-CCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCC
Q 007979 301 ARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKN-MELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGG 379 (582)
Q Consensus 301 ~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 379 (582)
+.+++|+.|++..+.... .+..+..+++ |+.|....+.. ..++. .......+.|+.|+++.+......
T Consensus 592 ~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L-~~lp~-----~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKL-KYIPN-----IFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCC-CSCCS-----CCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCC-CcCch-----hhhccccCCCCEEECcCCcCCCcc
Confidence 999999999987665432 2444555555 55444433332 12322 111122345888988866532100
Q ss_pred CCccchHHHHHhhCC--CCCCCcEEEEeeEeCCCcCCchhh-cCcCCcEEEEeCCCCCCcCCC-C-C-------CCCCcc
Q 007979 380 RRKNEHDQLLLEALQ--PPLNLKELFIGSYGGNTVSPSWMM-SLTNLRSLNLHLCENCEQLPP-L-G-------KLPSLE 447 (582)
Q Consensus 380 ~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~-l-~-------~l~~L~ 447 (582)
..++..+. ..++|+.|++++|.+..+ |.++. .+++|+.|+|++|... .+|. + . ++++|+
T Consensus 661 -------p~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 661 -------RNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp -------SSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCC
T ss_pred -------ccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCcc
Confidence 00111111 345899999999999987 76654 8999999999999766 5554 2 2 234999
Q ss_pred eeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccc-
Q 007979 448 KLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAV- 526 (582)
Q Consensus 448 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~- 526 (582)
.|+|++|. ++.+|..+.. ..+++|+.|+|+++ ++..++.. +..+++|+.|++++
T Consensus 732 ~L~Ls~N~-L~~lp~~l~~---------------~~l~~L~~L~Ls~N-~L~~lp~~--------l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 732 TIDLRFNK-LTSLSDDFRA---------------TTLPYLSNMDVSYN-CFSSFPTQ--------PLNSSQLKAFGIRHQ 786 (876)
T ss_dssp EEECCSSC-CCCCCGGGST---------------TTCTTCCEEECCSS-CCSSCCCG--------GGGCTTCCEEECCCC
T ss_pred EEECCCCC-CccchHHhhh---------------ccCCCcCEEEeCCC-CCCccchh--------hhcCCCCCEEECCCC
Confidence 99999997 7777765431 26899999999998 66655432 44899999999976
Q ss_pred -----ccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 527 -----CPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 527 -----C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
|.....+|..+..+++|+.|++++|.-
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 444567888899999999999999975
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=4.7e-26 Score=242.93 Aligned_cols=281 Identities=14% Similarity=0.049 Sum_probs=180.6
Q ss_pred cCCCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc
Q 007979 146 NSLDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI 224 (582)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 224 (582)
..++..++++.+.++.+..+ +..+.++++|++|++++|.+.. ..|..|.++++|++|++++|.+.+ ..
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~-----~~ 97 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLIF-----MA 97 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCSE-----EC
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCcccc-----cC
Confidence 34577899999999888766 5678999999999999998543 246668999999999999954332 34
Q ss_pred cccccccCCCCEEecCCCCCcccc-chhhhccCCccEEecCCCcCcccc--ccccccCCCCceeecCCccCCCcCCccCC
Q 007979 225 PRNIEKLVHLRYLNLSSVTLIRKL-PETLCELYNLEKLDISYCINLKAL--PQGIGKLINMKHLLNERTDSLGHMPAGIA 301 (582)
Q Consensus 225 p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~ 301 (582)
|..++++++|++|++++|. +..+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|......|..++
T Consensus 98 ~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp TTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHH
T ss_pred hhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcccccChhhhh
Confidence 6789999999999999999 5554 6779999999999999998 4443 44 44599999999999966555566678
Q ss_pred CCCCCC--ccCeeeecCCCCcCCCCcc-cccc------------ccCCC-------------------------------
Q 007979 302 RLPSLR--TLDEFHVSGGEGVDGRKGC-RLES------------LKNME------------------------------- 335 (582)
Q Consensus 302 ~l~~L~--~L~~~~~~~~~~~~~~~~~-~~~~------------l~~L~------------------------------- 335 (582)
.+++|+ +|++..+............ .+.. +..+.
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 888888 5554433222111100000 0000 00000
Q ss_pred ccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCc
Q 007979 336 LLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPS 415 (582)
Q Consensus 336 ~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~ 415 (582)
.++.+.+.... + .......+..+++|+.|+++.+... .++..+..+++|++|++++|.+....|.
T Consensus 255 ~L~~L~l~~n~-l---~~~~~~~~~~l~~L~~L~l~~n~l~-----------~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 255 SVESINLQKHY-F---FNISSNTFHCFSGLQELDLTATHLS-----------ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp EEEEEECTTCC-C---SSCCTTTTTTCTTCSEEECTTSCCS-----------CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ceeEEEeecCc-c---CccCHHHhccccCCCEEeccCCccC-----------CCChhhcccccCCEEECccCCcCcCchh
Confidence 11111111100 0 0011122456677777777654322 2334455667777777777776665555
Q ss_pred hhhcCcCCcEEEEeCCCCCCcCCC--CCCCCCcceeeccccc
Q 007979 416 WMMSLTNLRSLNLHLCENCEQLPP--LGKLPSLEKLYISDMK 455 (582)
Q Consensus 416 ~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~ 455 (582)
.+..+++|+.|++++|.....++. ++.+++|++|++++|.
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 666777777777777765544443 5666677777776665
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=234.49 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=87.5
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCC--cCCC-CCCCCCcceeecccccCceE-eCccccCCC-
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCE--QLPP-LGKLPSLEKLYISDMKSVKR-VGNEILGIE- 468 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~l~~-l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~- 468 (582)
..+++|++|++++|.+....|.++..+++|+.|++++|.... .+|. ++.+++|++|++++|. ++. +|...+...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCc
Confidence 456777888888877776557777778888888888776554 3332 6677788888887776 433 554322110
Q ss_pred CCCCC----CCCCCcccccC-cccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcC-CCCCCC
Q 007979 469 SDHHD----SSSSSSVIIAF-PKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDH-IHQTTT 542 (582)
Q Consensus 469 ~~~~~----~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~-~~~l~~ 542 (582)
..... +.........+ ++|+.|++++| +++.++.. +..+++|+.|++++| .++.+|.. +..+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--------VVKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--------GGGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--------hhcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 00000 00000001122 45555555555 44444322 336778888888875 56777765 667778
Q ss_pred cceEEEeCCc
Q 007979 543 LKGLSIWGCD 552 (582)
Q Consensus 543 L~~L~i~~C~ 552 (582)
|++|+++++|
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 8888887765
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.5e-26 Score=236.61 Aligned_cols=346 Identities=15% Similarity=0.125 Sum_probs=204.6
Q ss_pred CCcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
++..++++.+.++....++ ..+..+++|++|++++|.+.. ..|..|.++++|++|+|++| .+..+|.
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N------~l~~lp~ 86 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHN------KLVKISC 86 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSS------CCCEEEC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCC------ceeecCc
Confidence 3577888888888776654 467888889999998887543 24555888888999999883 4556776
Q ss_pred cccccCCCCEEecCCCCCcc-ccchhhhccCCccEEecCCCcCccccccccccCCCC--ceeecCCccC--CCcCCccCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIR-KLPETLCELYNLEKLDISYCINLKALPQGIGKLINM--KHLLNERTDS--LGHMPAGIA 301 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~ 301 (582)
. .+++|++|++++|.+.+ .+|..++++++|++|++++|. +.. ..+..+++| ++|++.+|.. ....|..+.
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 5 78888999998888443 467888888899999888887 333 346667777 8888887765 344444443
Q ss_pred C--------------------------CCCCCccCeeeecCCC-------------------------------------
Q 007979 302 R--------------------------LPSLRTLDEFHVSGGE------------------------------------- 318 (582)
Q Consensus 302 ~--------------------------l~~L~~L~~~~~~~~~------------------------------------- 318 (582)
. +++|+.|++..+....
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 3 4445555444431000
Q ss_pred ----------------CcCCCCcccccc--ccCCCccCeeeeeecCC-CCChhHHHh------------------cc-cC
Q 007979 319 ----------------GVDGRKGCRLES--LKNMELLQVCGIRRLGN-VSDVDEAKR------------------LK-LD 360 (582)
Q Consensus 319 ----------------~~~~~~~~~~~~--l~~L~~L~~l~~~~~~~-~~~~~~~~~------------------~~-l~ 360 (582)
...+..+..+.. ..+++.|+.+++..... ++....... .. ..
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 321 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchh
Confidence 000001111100 02222222222221110 110000000 00 13
Q ss_pred CCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCc--CCchhhcCcCCcEEEEeCCCCCCcCC
Q 007979 361 KKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTV--SPSWMMSLTNLRSLNLHLCENCEQLP 438 (582)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~l~ 438 (582)
.++.|+.|+++.+... ...+..+..+++|++|++++|.+..+ .|.++..+++|+.|++++|.....+|
T Consensus 322 ~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLT----------DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCEEECCSSCCC----------TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hCCcccEEEeECCccC----------hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 4556666666544322 22345566778888888888887752 24667788888888888887666444
Q ss_pred C--CCCCCCcceeecccccCceEeCcccc-CCCC---CCCCCCCCCcccccCcccccccccccccccccccCcccCCCCC
Q 007979 439 P--LGKLPSLEKLYISDMKSVKRVGNEIL-GIES---DHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPF 512 (582)
Q Consensus 439 ~--l~~l~~L~~L~L~~~~~l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 512 (582)
. +..+++|++|++++|...+.++..+. .... ..+.-.........+++|++|+++++ +++.++...
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~------- 463 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGI------- 463 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-------
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHH-------
Confidence 2 66777777777777763222222211 0000 00000111222447899999999998 777776542
Q ss_pred Ccccccccceeccccc
Q 007979 513 IDIMPRLSALAIAVCP 528 (582)
Q Consensus 513 ~~~~~~L~~L~l~~C~ 528 (582)
+..+++|+.|++++++
T Consensus 464 ~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEECcCCC
Confidence 3478999999999965
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=1.4e-25 Score=239.27 Aligned_cols=361 Identities=15% Similarity=0.051 Sum_probs=222.8
Q ss_pred CCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecC
Q 007979 161 LGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLS 240 (582)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~ 240 (582)
....+|..+. +.++.|++++|.+.. +.|..|.++++|++|++++|.+.. ..|..++++++|++|+++
T Consensus 23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 23 GLNEIPGTLP--NSTECLEFSFNVLPT------IQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp CCSSCCTTSC--TTCCEEECTTCCCSE------ECTTTSTTCTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECT
T ss_pred CcccCcCCCC--CcCcEEEccCCccCc------CChhHhccCccceEEECCCCccce-----eChhhccCccccCeeeCC
Confidence 3445666554 479999999998643 245568999999999999944322 347889999999999999
Q ss_pred CCCCccccchhhhccCCccEEecCCCcCcccc-ccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCC
Q 007979 241 SVTLIRKLPETLCELYNLEKLDISYCINLKAL-PQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEG 319 (582)
Q Consensus 241 ~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~ 319 (582)
+|.+.+..|..++++++|++|++++|. +..+ |..++.+++|++|++++|......+..+..+++|++|++..+....
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 167 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY- 167 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-
T ss_pred CCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-
Confidence 999666668899999999999999998 5554 6778999999999999997655332344459999999976654332
Q ss_pred cCCCCccccccccCCCccCeeeeeecC--C-CCChh---HHHhccc----------CCCC--------------------
Q 007979 320 VDGRKGCRLESLKNMELLQVCGIRRLG--N-VSDVD---EAKRLKL----------DKKK-------------------- 363 (582)
Q Consensus 320 ~~~~~~~~~~~l~~L~~L~~l~~~~~~--~-~~~~~---~~~~~~l----------~~~~-------------------- 363 (582)
..+..+..+++++.+ .+...... . .+... ......+ ..+.
T Consensus 168 ---~~~~~~~~l~~L~~l-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 168 ---LSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp ---ECHHHHHTTTTCCSE-EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ---cChhhhhhhccccee-EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 112334444444421 12211110 0 00000 0000000 0000
Q ss_pred -----------CcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCC
Q 007979 364 -----------YLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCE 432 (582)
Q Consensus 364 -----------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 432 (582)
.++.+++..+... ......+..+++|++|++++|.+..+ |.++..+++|++|++++|.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFF----------NISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCS----------SCCTTTTTTCTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCC
T ss_pred ChhHhchhhcCceeEEEeecCccC----------ccCHHHhccccCCCEEeccCCccCCC-ChhhcccccCCEEECccCC
Confidence 2333333222111 11123467789999999999999877 9999999999999999998
Q ss_pred CCCcCC-CCCCCCCcceeecccccCceEeCccccCC-CCCCCCC----CCC-----CcccccCccccccccccccccccc
Q 007979 433 NCEQLP-PLGKLPSLEKLYISDMKSVKRVGNEILGI-ESDHHDS----SSS-----SSVIIAFPKLQSLFIEDLPELEEW 501 (582)
Q Consensus 433 ~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~~~~----~~~-----~~~~~~~~~L~~L~l~~~~~L~~l 501 (582)
.....| .+..+++|++|++++|.....++...+.. ......+ ... ......+++|++|+++++ .+..+
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 391 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSL 391 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEE
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcC
Confidence 776655 48899999999999997554565543221 1100000 000 112456677777777665 23322
Q ss_pred ccCccc----------------CC-CCC-CcccccccceecccccccccCCcCCCCCCCcceEEEeCCc
Q 007979 502 DYGITR----------------TG-HPF-IDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 502 ~~~~~~----------------~~-~~~-~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~ 552 (582)
...... .. .+. +..+++|+.|++++|..-...|..+..+++|++|++++|+
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 211100 00 011 4455666666666654333334555566666666666664
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=242.86 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred CCCcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
.++..++++.+.++....++ ..+.++++|++|++++|.+.. +.+..|.++++|++|++++| .+..+|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~~~~~~l~~L~~L~L~~n------~l~~~~ 92 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHLSTLILTGN------PIQSLA 92 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTC------CCCEEC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc------cCcccccCchhCCEEeCcCC------cCCccC
Confidence 45677899998888776553 468889999999999997543 24555888999999999984 344444
Q ss_pred -ccccccCCCCEEecCCCCCccccch-hhhccCCccEEecCCCcCcc-ccccccccCCCCceeecCCccCCCcCCccCCC
Q 007979 226 -RNIEKLVHLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLK-ALPQGIGKLINMKHLLNERTDSLGHMPAGIAR 302 (582)
Q Consensus 226 -~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~ 302 (582)
..++++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred HhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 678888899999998888 666664 58888899999998887433 36888888888999988888654444444554
Q ss_pred CCCC
Q 007979 303 LPSL 306 (582)
Q Consensus 303 l~~L 306 (582)
+++|
T Consensus 172 l~~L 175 (570)
T 2z63_A 172 LHQM 175 (570)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 5444
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=243.15 Aligned_cols=350 Identities=18% Similarity=0.167 Sum_probs=228.6
Q ss_pred CCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
.+..++++.+..+.+..+ +..+.++++|++|++++|... ..+.|..|.++++|++|+|++|.+.+ ..|.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-----~~i~~~~f~~L~~L~~L~Ls~N~l~~-----~~p~ 91 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-----LTIDKEAFRNLPNLRILDLGSSKIYF-----LHPD 91 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-----CEECTTTTSSCTTCCEEECTTCCCCE-----ECTT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-----cccCHHHhcCCCCCCEEECCCCcCcc-----cCHh
Confidence 688999999999887755 678899999999999999532 23336668999999999999944332 3478
Q ss_pred cccccCCCCEEecCCCCCccccchh--hhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLPET--LCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARL 303 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 303 (582)
.++++++|++|++++|.+.+.+|.. ++++++|++|++++|......| ..++++++|++|++++|......|..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 8999999999999999965656665 8999999999999998444333 568999999999999997766677777666
Q ss_pred --CCCCccCeeeecCCCCcCCCCccccccccC---CCccCeeeeeec---CCCCC-------------------------
Q 007979 304 --PSLRTLDEFHVSGGEGVDGRKGCRLESLKN---MELLQVCGIRRL---GNVSD------------------------- 350 (582)
Q Consensus 304 --~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~---L~~L~~l~~~~~---~~~~~------------------------- 350 (582)
++|+.|++..+...... +..+..+.+ ...|+.+.+... +..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHCSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cCCccceEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 78888887765443311 112222111 001333333221 11100
Q ss_pred ----hhHHHhcccCC--CCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCc
Q 007979 351 ----VDEAKRLKLDK--KKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLR 424 (582)
Q Consensus 351 ----~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 424 (582)
........+.+ ...++.|+++.+... ...+..+..+++|+.|++++|.+....|..+..+++|+
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF----------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC----------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccCCCChhhhhccccCCccEEECCCCccc----------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 00000111111 245666666543321 11233466778888888888888777677788888888
Q ss_pred EEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCccccccccccccccccccc
Q 007979 425 SLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDY 503 (582)
Q Consensus 425 ~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 503 (582)
.|++++|......+. ++.+++|++|++++|. ++.++...+ ..+++|++|+++++ .++.++
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~----------------~~l~~L~~L~Ls~N-~l~~i~- 378 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF----------------KFLEKLQTLDLRDN-ALTTIH- 378 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS----------------CSCCCCCEEEEETC-CSCCCS-
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh----------------cCCCCCCEEECCCC-CCCccc-
Confidence 888888876555443 7788888888888875 555554332 35677777777776 343322
Q ss_pred CcccCCCCCCcccccccceecccccccccCCcC----------------------CCCCCCcceEEEeCCc
Q 007979 504 GITRTGHPFIDIMPRLSALAIAVCPKLKALPDH----------------------IHQTTTLKGLSIWGCD 552 (582)
Q Consensus 504 ~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~----------------------~~~l~~L~~L~i~~C~ 552 (582)
.+++|+.|.+.+| .++.+|.. +..+++|+.|++++|.
T Consensus 379 -----------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 379 -----------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp -----------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred -----------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 2445555555542 23333321 2357788888888764
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.2e-25 Score=222.30 Aligned_cols=301 Identities=18% Similarity=0.259 Sum_probs=173.5
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
..++++.+.++....++ .+..+++|++|++++|.+... +. +..+++|++|++++| .+..+| .++
T Consensus 44 ~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n------~i~~~~-~~~ 107 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTN------KITDIS-ALQ 107 (347)
T ss_dssp TTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSS------CCCCCG-GGT
T ss_pred ccccEEEEeCCccccch-hhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCC------cccCch-HHc
Confidence 34455555544444433 244555555555555543321 11 455555555555552 222332 345
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCcc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTL 309 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 309 (582)
.+++|++|++++|. +..+|. +..+++|++|++++|.....++. +..+++|++|++++|... .++. +..+++|++|
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSL 182 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEE
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEE
Confidence 55555555555555 444443 55555555555555543333332 555555555555555322 2222 4444555555
Q ss_pred CeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHH
Q 007979 310 DEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLL 389 (582)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 389 (582)
++..+... ... .+..++.|+.+.+..+....
T Consensus 183 ~l~~n~l~--------------------------------~~~-----~~~~l~~L~~L~l~~n~l~~------------ 213 (347)
T 4fmz_A 183 SLNYNQIE--------------------------------DIS-----PLASLTSLHYFTAYVNQITD------------ 213 (347)
T ss_dssp ECTTSCCC--------------------------------CCG-----GGGGCTTCCEEECCSSCCCC------------
T ss_pred EccCCccc--------------------------------ccc-----cccCCCccceeecccCCCCC------------
Confidence 43322211 100 02334455555554432211
Q ss_pred HhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCC
Q 007979 390 LEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIES 469 (582)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 469 (582)
...+..+++|++|++++|.+... +. +..+++|+.|++++|.... ++.+..+++|++|++++|. ++.++.
T Consensus 214 ~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~------- 282 (347)
T 4fmz_A 214 ITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDISV------- 282 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCGG-------
T ss_pred CchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCChh-------
Confidence 01145678899999999988876 44 7889999999999985544 5668888999999999886 555432
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEe
Q 007979 470 DHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIW 549 (582)
Q Consensus 470 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~ 549 (582)
...+++|+.|++++| .+....... +..+++|+.|++++|+ ++.++. +..+++|++|+++
T Consensus 283 -----------~~~l~~L~~L~L~~n-~l~~~~~~~-------l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 283 -----------LNNLSQLNSLFLNNN-QLGNEDMEV-------IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp -----------GGGCTTCSEEECCSS-CCCGGGHHH-------HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS
T ss_pred -----------hcCCCCCCEEECcCC-cCCCcChhH-------hhccccCCEEEccCCc-cccccC-hhhhhccceeehh
Confidence 347889999999988 455443321 3378999999999976 666655 6678899999999
Q ss_pred CCc
Q 007979 550 GCD 552 (582)
Q Consensus 550 ~C~ 552 (582)
+|+
T Consensus 342 ~N~ 344 (347)
T 4fmz_A 342 NQV 344 (347)
T ss_dssp CC-
T ss_pred hhc
Confidence 886
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-25 Score=224.63 Aligned_cols=307 Identities=16% Similarity=0.142 Sum_probs=219.0
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCcccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~l 248 (582)
..+++++.|+++++.+. .+++..|..+++|++|++++| .+..+| ..++.+++|++|++++|.+.+..
T Consensus 42 ~~l~~l~~l~l~~~~l~------~l~~~~~~~l~~L~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDL------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGGCCCSEEEEESCEES------EECTHHHHHCCCCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCCceEEEecCCchh------hCChhHhcccccCcEEECCCC------cccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 35678888888888743 334555788888888888883 444454 47788888888888888844444
Q ss_pred chhhhccCCccEEecCCCcCccccccc-cccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccc
Q 007979 249 PETLCELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCR 327 (582)
Q Consensus 249 p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~ 327 (582)
|..++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++..+.... ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc
Confidence 5567888888888888887 6677766 4788888888888886655555667888888888876554332 12
Q ss_pred cccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeE
Q 007979 328 LESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSY 407 (582)
Q Consensus 328 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 407 (582)
+..++ .|+.+.+.... +. .+.....|+.|++..+.... + ....+++|+.|++++|
T Consensus 182 ~~~l~---~L~~L~l~~n~-l~--------~~~~~~~L~~L~l~~n~l~~-----------~--~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 182 LSLIP---SLFHANVSYNL-LS--------TLAIPIAVEELDASHNSINV-----------V--RGPVNVELTILKLQHN 236 (390)
T ss_dssp GGGCT---TCSEEECCSSC-CS--------EEECCSSCSEEECCSSCCCE-----------E--ECCCCSSCCEEECCSS
T ss_pred ccccc---ccceeeccccc-cc--------ccCCCCcceEEECCCCeeee-----------c--cccccccccEEECCCC
Confidence 23333 33333332211 11 12233467777776543221 0 1123478999999999
Q ss_pred eCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcc
Q 007979 408 GGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPK 486 (582)
Q Consensus 408 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (582)
.+... .++..+++|+.|++++|...+..|. +..+++|++|++++|. ++.++... ..+|+
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----------------~~l~~ 296 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------QPIPT 296 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS-----------------SCCTT
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc-----------------CCCCC
Confidence 98874 6889999999999999987766554 8899999999999987 66665432 36899
Q ss_pred cccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 487 LQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 487 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
|++|+++++ ++..++.. +..+++|+.|++++|+ ++.+| +..+++|+.|+++++|-
T Consensus 297 L~~L~L~~n-~l~~~~~~--------~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 297 LKVLDLSHN-HLLHVERN--------QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCEEECCSS-CCCCCGGG--------HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCEEECCCC-cceecCcc--------ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 999999998 67766543 3378999999999964 77776 56689999999999774
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.5e-26 Score=240.09 Aligned_cols=371 Identities=16% Similarity=0.124 Sum_probs=220.1
Q ss_pred CCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
+...++++.+.++....+ +..+.++++|++|++++|.+.. ..|..|.++++|++|++++| .+..+|.
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n------~l~~~~~ 91 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDN------HLSSLSS 91 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTS------CCCSCCH
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCCC------ccCccCH
Confidence 356788888888776654 4567888888888888887543 24455788888888888884 3444443
Q ss_pred -cccccCCCCEEecCCCCCcc-ccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCC
Q 007979 227 -NIEKLVHLRYLNLSSVTLIR-KLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARL 303 (582)
Q Consensus 227 -~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 303 (582)
.++++++|++|++++|.+.+ ..|..++++++|++|++++|..+..+| ..++.+++|++|++++|......|..++.+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 47888888888888887332 346678888888888888887666665 467888888888888886666666666665
Q ss_pred CCCCccCeee------------------------ecCCCCcCCCCccccccccCC-------------------------
Q 007979 304 PSLRTLDEFH------------------------VSGGEGVDGRKGCRLESLKNM------------------------- 334 (582)
Q Consensus 304 ~~L~~L~~~~------------------------~~~~~~~~~~~~~~~~~l~~L------------------------- 334 (582)
++|++|++.. +......... ......++++
T Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 5555554433 2211100000 0000000111
Q ss_pred CccCeeeeeecC-----CC------------------------CCh------hHHH--------------------hccc
Q 007979 335 ELLQVCGIRRLG-----NV------------------------SDV------DEAK--------------------RLKL 359 (582)
Q Consensus 335 ~~L~~l~~~~~~-----~~------------------------~~~------~~~~--------------------~~~l 359 (582)
..++.+.+..+. .+ +.. .... ....
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 111111111000 00 000 0000 0000
Q ss_pred CCCCCcceEEEEeeecCCCCCCccchHHHH---HhhCCCCCCCcEEEEeeEeCCCcCC--chhhcCcCCcEEEEeCCCCC
Q 007979 360 DKKKYLSCLRLWFDVKESGGRRKNEHDQLL---LEALQPPLNLKELFIGSYGGNTVSP--SWMMSLTNLRSLNLHLCENC 434 (582)
Q Consensus 360 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~ 434 (582)
..++.|+.|+++.+... ... ...+..+++|++|++++|.+..+.+ ..+..+++|+.|++++|...
T Consensus 331 ~~l~~L~~L~Ls~N~l~----------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMV----------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HHCTTCCEEECCSSCCC----------HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hcCccccEEEccCCccc----------cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 12334444444433211 122 2235667888888888888776521 34778888999999888665
Q ss_pred CcCCCCCCCCCcceeecccccCceEeCccccCC-CCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCC
Q 007979 435 EQLPPLGKLPSLEKLYISDMKSVKRVGNEILGI-ESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFI 513 (582)
Q Consensus 435 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 513 (582)
...+.++.+++|++|++++|. ++.++...... ....-..-........+++|++|+++++ +++.++. .
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---------~ 469 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD---------A 469 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC---------G
T ss_pred cCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC---------c
Confidence 433347788889999998887 65555432110 0000000000111236778888888887 6665553 2
Q ss_pred cccccccceecccccccccCCc-CCCCCCCcceEEEeCCcc
Q 007979 514 DIMPRLSALAIAVCPKLKALPD-HIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 514 ~~~~~L~~L~l~~C~~L~~lp~-~~~~l~~L~~L~i~~C~~ 553 (582)
..+++|+.|++++| .++.+|. .+..+++|+.|++++||-
T Consensus 470 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 470 SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 37899999999995 5666654 577899999999988763
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=8.2e-25 Score=233.31 Aligned_cols=143 Identities=23% Similarity=0.186 Sum_probs=115.8
Q ss_pred ecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEE
Q 007979 159 IGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYL 237 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L 237 (582)
+.....+|..+. +++++|++++|.+.. ..+..|.++++|++|++++| .+..+ |..++++++|++|
T Consensus 20 ~~~l~~ip~~~~--~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n------~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 20 DQKLSKVPDDIP--SSTKNIDLSFNPLKI------LKSYSFSNFSELQWLDLSRC------EIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TSCCSSCCTTSC--TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTC------CCCEECTTTTTTCTTCCEE
T ss_pred CCCcccCCCCCC--CCcCEEECCCCCcCE------eChhhccCCccCcEEeCCCC------cccccCHHHhhchhhcCEe
Confidence 334556666553 789999999998643 24445899999999999994 44455 6778999999999
Q ss_pred ecCCCCCccccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCC-cCCccCCCCCCCCccCeeeec
Q 007979 238 NLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLG-HMPAGIARLPSLRTLDEFHVS 315 (582)
Q Consensus 238 ~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~ 315 (582)
++++|.+.+..|..|+++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|++..+.
T Consensus 86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 999999444558899999999999999998 55554 779999999999999997654 579999999999999987654
Q ss_pred C
Q 007979 316 G 316 (582)
Q Consensus 316 ~ 316 (582)
.
T Consensus 165 l 165 (606)
T 3vq2_A 165 I 165 (606)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4.7e-25 Score=238.39 Aligned_cols=156 Identities=21% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCCcceeEEEEEecCCCcccc-cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASFPV-STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
.++..++++.+..+....++. .+.++++|++|++++|.+... .|..|.++++|++|++++| .+..+|
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n------~l~~l~ 89 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLKVLNLQHN------ELSQLS 89 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCCEEECCSS------CCCCCC
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcCEEECCCC------ccCccC
Confidence 346789999999888776655 588999999999999986432 4666899999999999983 566677
Q ss_pred c-cccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccC--C
Q 007979 226 R-NIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGI--A 301 (582)
Q Consensus 226 ~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i--~ 301 (582)
. .++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|++++|......+..+ .
T Consensus 90 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 5 58999999999999999 55554 679999999999999998555566778899999999999996544444433 3
Q ss_pred CCCCCCccCeeeec
Q 007979 302 RLPSLRTLDEFHVS 315 (582)
Q Consensus 302 ~l~~L~~L~~~~~~ 315 (582)
.+++|+.|++..+.
T Consensus 169 ~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 169 ANSSLKKLELSSNQ 182 (680)
T ss_dssp TTCEESEEECTTCC
T ss_pred ccccccEEECCCCc
Confidence 56788888876553
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.3e-25 Score=232.08 Aligned_cols=149 Identities=17% Similarity=0.104 Sum_probs=90.6
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCc--CC-CCCCCCCcceeecccccCceEeCccccCCC-C
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQ--LP-PLGKLPSLEKLYISDMKSVKRVGNEILGIE-S 469 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~-~ 469 (582)
..+++|++|++++|.+....|.++..+++|+.|++++|..... +| .++.+++|++|++++|.....+|...+..- .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4556777777777777665566677777777777777754431 12 256677777777777662222544322110 0
Q ss_pred CCCC----CCCCCcccccC-cccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcC-CCCCCCc
Q 007979 470 DHHD----SSSSSSVIIAF-PKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDH-IHQTTTL 543 (582)
Q Consensus 470 ~~~~----~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~-~~~l~~L 543 (582)
.... +.-.......+ ++|++|+++++ +++.++.. +..+++|+.|++++| .++.+|.. +..+++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--------VTHLQALQELNVASN-QLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--------TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--------hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCC
Confidence 0000 00000111233 57778888777 66665543 337889999999984 67888876 7888999
Q ss_pred ceEEEeCCc
Q 007979 544 KGLSIWGCD 552 (582)
Q Consensus 544 ~~L~i~~C~ 552 (582)
+.|+++++|
T Consensus 500 ~~L~l~~N~ 508 (562)
T 3a79_B 500 QYIWLHDNP 508 (562)
T ss_dssp CCEECCSCC
T ss_pred CEEEecCCC
Confidence 999998765
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.5e-24 Score=227.00 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred CCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCc---cccCCCCCCC
Q 007979 397 LNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGN---EILGIESDHH 472 (582)
Q Consensus 397 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~---~~~~~~~~~~ 472 (582)
.+|++|+++++.+... + ....+++|++|++++|...+..|. ++.+++|++|++++|. ++.++. .+........
T Consensus 331 ~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCE
Confidence 5688888888876543 2 126889999999999988875554 8999999999999987 665542 1111100000
Q ss_pred CC-------C-CCCcccccCcccccccccccccccccccCcccCCCCCCccc-ccccceecccccccccCCcCCCCCCCc
Q 007979 473 DS-------S-SSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIM-PRLSALAIAVCPKLKALPDHIHQTTTL 543 (582)
Q Consensus 473 ~~-------~-~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~-~~L~~L~l~~C~~L~~lp~~~~~l~~L 543 (582)
.+ . ........+++|++|+++++ ++.... ...+ ++|+.|++++| .++.+|..+..+++|
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSV----------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQAL 475 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGG----------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcch----------hhhhcCcCCEEECCCC-cCcccChhhcCCCCC
Confidence 00 0 00011233455555555554 222111 1133 68999999986 788999887789999
Q ss_pred ceEEEeCCcchHHHhcCCCCC-CCCccCCcCceeeCccc
Q 007979 544 KGLSIWGCDLLEERYRKGEGE-DWPKISHIPNIYINYLR 581 (582)
Q Consensus 544 ~~L~i~~C~~l~~~~~~~~~~-~~~~i~~i~~~~~~~~~ 581 (582)
++|++++|.- +. ... .+....++..+.+.+++
T Consensus 476 ~~L~L~~N~l-~~-----l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 476 QELNVASNQL-KS-----VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SEEECCSSCC-CC-----CCTTSTTTCTTCCCEECCSCC
T ss_pred CEEECCCCCC-CC-----CCHHHHhcCCCCCEEEecCCC
Confidence 9999999853 21 111 23444555556666553
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-25 Score=234.29 Aligned_cols=306 Identities=15% Similarity=0.144 Sum_probs=223.1
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccc
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp 249 (582)
.+++++.+++.++.+. .+++..|..+++|++|+|++| .+..+| ..++.+++|++|+|++|.+.+..|
T Consensus 49 ~l~~l~~l~l~~~~l~------~lp~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDL------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEES------EECTHHHHHCCCCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCceEEEeeCCCCC------CcCHHHHccCCCCcEEECCCC------CCCCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 5678899999888743 335666788999999999984 344444 578899999999999998444444
Q ss_pred hhhhccCCccEEecCCCcCccccccc-cccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCcccc
Q 007979 250 ETLCELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRL 328 (582)
Q Consensus 250 ~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 328 (582)
..++++++|++|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++.++.... ..+
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~~ 188 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VDL 188 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CCG
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cCh
Confidence 567899999999999987 6677765 4889999999999987666666678889999998876554332 123
Q ss_pred ccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEe
Q 007979 329 ESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYG 408 (582)
Q Consensus 329 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 408 (582)
..+++| ..+.+.... +. .+.....|+.|+++.+.... ++ ...+++|+.|++++|.
T Consensus 189 ~~l~~L---~~L~l~~n~-l~--------~l~~~~~L~~L~ls~n~l~~-----------~~--~~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 189 SLIPSL---FHANVSYNL-LS--------TLAIPIAVEELDASHNSINV-----------VR--GPVNVELTILKLQHNN 243 (597)
T ss_dssp GGCTTC---SEEECCSSC-CS--------EEECCTTCSEEECCSSCCCE-----------EE--CSCCSCCCEEECCSSC
T ss_pred hhhhhh---hhhhcccCc-cc--------cccCCchhheeeccCCcccc-----------cc--cccCCCCCEEECCCCC
Confidence 333333 333332211 11 12234567777776554321 00 1124689999999999
Q ss_pred CCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCccc
Q 007979 409 GNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKL 487 (582)
Q Consensus 409 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 487 (582)
+.. +.++..+++|+.|++++|...+..|. ++.+++|+.|+|++|. ++.+|... ..+|+|
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~-----------------~~l~~L 303 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-----------------QPIPTL 303 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS-----------------SCCTTC
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc-----------------ccCCCC
Confidence 887 57889999999999999988776554 8899999999999987 66665432 368999
Q ss_pred ccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcc
Q 007979 488 QSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 488 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
+.|+|++| .+..++.. +..+++|+.|++++|. +..+| +..+++|+.|+++++|-
T Consensus 304 ~~L~Ls~N-~l~~i~~~--------~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 304 KVLDLSHN-HLLHVERN--------QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CEEECCSS-CCCCCGGG--------HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred cEEECCCC-CCCccCcc--------cccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 99999998 56666542 3478999999999964 66665 55688999999999874
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=9e-25 Score=224.70 Aligned_cols=337 Identities=19% Similarity=0.222 Sum_probs=171.8
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
..++.+.+..+....++ .+..+++|++|++++|.+... .+ +.++++|++|++++| .+..++. ++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~------~~--~~~l~~L~~L~l~~n------~l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI------TP--LKNLTKLVDILMNNN------QIADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCC------GG--GTTCTTCCEEECCSS------CCCCCGG-GT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCc------hh--hhccccCCEEECCCC------ccccChh-hc
Confidence 45666666666655544 366777778888777765432 22 677777778877773 3444444 77
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCcc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTL 309 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 309 (582)
++++|++|++++|. +..+|. +.++++|++|++++|. +..+|. ++.+++|++|++.++ ...++. +..+++|+.|
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L 182 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERL 182 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEE
T ss_pred CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEE
Confidence 77777777777777 566654 7777777777777776 555543 666667776666432 122222 5566666666
Q ss_pred CeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHH
Q 007979 310 DEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLL 389 (582)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 389 (582)
++..+.... +..+..+.+|+.+.+....- .... .+..++.|+.|++..+....
T Consensus 183 ~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~------------ 235 (466)
T 1o6v_A 183 DISSNKVSD---------ISVLAKLTNLESLIATNNQI-SDIT-----PLGILTNLDELSLNGNQLKD------------ 235 (466)
T ss_dssp ECCSSCCCC---------CGGGGGCTTCSEEECCSSCC-CCCG-----GGGGCTTCCEEECCSSCCCC------------
T ss_pred ECcCCcCCC---------ChhhccCCCCCEEEecCCcc-cccc-----cccccCCCCEEECCCCCccc------------
Confidence 655443221 11233333333333332211 1100 02334445555554432211
Q ss_pred HhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCC
Q 007979 390 LEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIES 469 (582)
Q Consensus 390 ~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 469 (582)
...+..+++|++|++++|.+... +. +..+++|+.|++++|.... ++.+..+++|+.|++++|. ++.++. +.....
T Consensus 236 ~~~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~ 310 (466)
T 1o6v_A 236 IGTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDISP-ISNLKN 310 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTT
T ss_pred chhhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCchh-hcCCCC
Confidence 01233344455555554444443 21 4444444444444443322 1224444444444444443 222211 000000
Q ss_pred CC-----CCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcc
Q 007979 470 DH-----HDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLK 544 (582)
Q Consensus 470 ~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~ 544 (582)
.. ............+++|++|++++| .+..++ .+..+++|+.|++++|. +..++. +..+++|+
T Consensus 311 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 378 (466)
T 1o6v_A 311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRIT 378 (466)
T ss_dssp CSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCC
T ss_pred CCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCC
Confidence 00 000000000235666777777666 444332 24477888888888764 444443 66678888
Q ss_pred eEEEeCCcc
Q 007979 545 GLSIWGCDL 553 (582)
Q Consensus 545 ~L~i~~C~~ 553 (582)
.|++++|+-
T Consensus 379 ~L~l~~n~~ 387 (466)
T 1o6v_A 379 QLGLNDQAW 387 (466)
T ss_dssp EEECCCEEE
T ss_pred EEeccCCcc
Confidence 888888764
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=227.25 Aligned_cols=307 Identities=20% Similarity=0.167 Sum_probs=171.5
Q ss_pred CCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEEec
Q 007979 161 LGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNL 239 (582)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L 239 (582)
....+|..+ .++++.|++++|.+.. +.+..|.++++|++|+|++| .+..+ |..++++++|++|++
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n------~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGKNRIKT------LNQDEFASFPHLEELELNEN------IVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCE------ECTTTTTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCEEEC
T ss_pred CcCcCCCCC--CCCCcEEECCCCccce------ECHhHccCCCCCCEEECCCC------ccCEeChhhhhCCccCCEEEC
Confidence 334445443 2577888888877543 23444777888888888874 33333 567778888888888
Q ss_pred CCCCCccccch-hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCC
Q 007979 240 SSVTLIRKLPE-TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGE 318 (582)
Q Consensus 240 ~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 318 (582)
++|. +..+|. .+.++++|++|++++|......|..+..+++|++|++++|......|..+..+++|++|++..+....
T Consensus 88 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 88 RSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 8877 556654 36778888888888877444456667778888888888776555555667777788877776553322
Q ss_pred CcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCC
Q 007979 319 GVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLN 398 (582)
Q Consensus 319 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 398 (582)
.....+ ..+..|+.+.+....- .. .....+..++.|+.|++..+... ..++.......+
T Consensus 167 ----~~~~~l---~~l~~L~~L~l~~n~i-~~---~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~~~~~~~~ 225 (477)
T 2id5_A 167 ----IPTEAL---SHLHGLIVLRLRHLNI-NA---IRDYSFKRLYRLKVLEISHWPYL----------DTMTPNCLYGLN 225 (477)
T ss_dssp ----CCHHHH---TTCTTCCEEEEESCCC-CE---ECTTCSCSCTTCCEEEEECCTTC----------CEECTTTTTTCC
T ss_pred ----cChhHh---cccCCCcEEeCCCCcC-cE---eChhhcccCcccceeeCCCCccc----------cccCcccccCcc
Confidence 111112 2233333333322110 00 01113444555566655543211 001112222336
Q ss_pred CcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCC
Q 007979 399 LKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSS 477 (582)
Q Consensus 399 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (582)
|++|++++|.+..+.+..+..+++|+.|++++|......+. +..+++|+.|++++|. ++.++...
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------- 291 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA------------- 291 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTT-------------
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHH-------------
Confidence 66666666666655223455666666666666654443332 5666666666666665 44443222
Q ss_pred CcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 478 SSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 478 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
...+++|++|+|+++ +++.++... +..+++|+.|++.+++
T Consensus 292 ---~~~l~~L~~L~L~~N-~l~~~~~~~-------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 ---FRGLNYLRVLNVSGN-QLTTLEESV-------FHSVGNLETLILDSNP 331 (477)
T ss_dssp ---BTTCTTCCEEECCSS-CCSCCCGGG-------BSCGGGCCEEECCSSC
T ss_pred ---hcCcccCCEEECCCC-cCceeCHhH-------cCCCcccCEEEccCCC
Confidence 125566666666665 455444322 2255666666666543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=7.3e-25 Score=225.20 Aligned_cols=366 Identities=14% Similarity=0.144 Sum_probs=246.9
Q ss_pred cCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEEe
Q 007979 160 GLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLN 238 (582)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~ 238 (582)
.....+|. + .++|++|++++|.+.. ..|..|.++++|++|++++|.+.+ .+ |..++++++|++|+
T Consensus 20 ~~l~~lp~-l--~~~l~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~n~~~~-----~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 20 RGLHQVPE-L--PAHVNYVDLSLNSIAE------LNETSFSRLQDLQFLKVEQQTPGL-----VIRNNTFRGLSSLIILK 85 (455)
T ss_dssp SCCSSCCC-C--CTTCCEEECCSSCCCE------ECTTTTSSCTTCCEEECCCCSTTC-----EECTTTTTTCTTCCEEE
T ss_pred CCcccCCC-C--CCccCEEEecCCccCc------CChhHhccCccccEEECcCCcccc-----eECcccccccccCCEEe
Confidence 34445555 2 3789999999998643 245558999999999999954321 34 46789999999999
Q ss_pred cCCCCCccccchhhhccCCccEEecCCCcCccccccc--cccCCCCceeecCCccCCCcCCcc-CCCCCCCCccCeeeec
Q 007979 239 LSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQG--IGKLINMKHLLNERTDSLGHMPAG-IARLPSLRTLDEFHVS 315 (582)
Q Consensus 239 L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 315 (582)
+++|.+.+..|..++++++|++|++++|......|.. ++.+++|++|++++|......|.. +..+++|++|++..+.
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999955566889999999999999999854445554 889999999999999776666765 7889999999976654
Q ss_pred CCCCcCCCCccccccccCCCccCeeeeeecC--CCCC--hhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh
Q 007979 316 GGEGVDGRKGCRLESLKNMELLQVCGIRRLG--NVSD--VDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE 391 (582)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~--~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 391 (582)
... ..+..+..+.. ..+..+.+.... .++. ........+..++.|+.|+++.+... ........
T Consensus 166 l~~----~~~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-------~~~~~~~~ 233 (455)
T 3v47_A 166 VKS----ICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-------ESMAKRFF 233 (455)
T ss_dssp BSC----CCTTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-------HHHHHHHH
T ss_pred ccc----cChhhhhcccc-ccccccccccCcccccchhhccccccccccccceeeeEecCCCccc-------ccchhhhh
Confidence 332 22333333311 123333332211 1111 11112223445577888888755432 01111122
Q ss_pred hCCCCCCCcEEEEeeEeCCCc----------CCchhh--cCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCce
Q 007979 392 ALQPPLNLKELFIGSYGGNTV----------SPSWMM--SLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVK 458 (582)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~~----------~p~~~~--~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~ 458 (582)
......+|+.|+++++..... .+..+. ..++|+.|++++|......|. ++.+++|++|++++|. ++
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 312 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-IN 312 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CC
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-cc
Confidence 222347899999987744321 011222 347899999999988877665 8899999999999998 66
Q ss_pred EeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccC-CcCC
Q 007979 459 RVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKAL-PDHI 537 (582)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l-p~~~ 537 (582)
.++... +..+++|++|+++++ .+..+.... +..+++|+.|++++|. ++.+ |..+
T Consensus 313 ~~~~~~----------------~~~l~~L~~L~Ls~N-~l~~~~~~~-------~~~l~~L~~L~Ls~N~-l~~~~~~~~ 367 (455)
T 3v47_A 313 KIDDNA----------------FWGLTHLLKLNLSQN-FLGSIDSRM-------FENLDKLEVLDLSYNH-IRALGDQSF 367 (455)
T ss_dssp EECTTT----------------TTTCTTCCEEECCSS-CCCEECGGG-------GTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred ccChhH----------------hcCcccCCEEECCCC-ccCCcChhH-------hcCcccCCEEECCCCc-ccccChhhc
Confidence 664433 237899999999998 666654332 3488999999999975 5554 7788
Q ss_pred CCCCCcceEEEeCCcchHHHhcCCCCCCCCccCCcCceeeCcccC
Q 007979 538 HQTTTLKGLSIWGCDLLEERYRKGEGEDWPKISHIPNIYINYLRI 582 (582)
Q Consensus 538 ~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 582 (582)
..+++|++|++++|.- +. -....+.....+..+.+.+++|
T Consensus 368 ~~l~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 368 LGLPNLKELALDTNQL-KS----VPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCC-SC----CCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccEEECCCCcc-cc----CCHhHhccCCcccEEEccCCCc
Confidence 8999999999999853 11 1112234556666677766553
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=237.71 Aligned_cols=339 Identities=16% Similarity=0.138 Sum_probs=236.9
Q ss_pred ecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEE
Q 007979 159 IGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYL 237 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L 237 (582)
.+....+|. -.+++++|++++|.+.. +.+..|.++++|++|+|++| ..+..+ |..++++++|++|
T Consensus 13 ~~~L~~vP~---lp~~l~~LdLs~N~i~~------i~~~~~~~l~~L~~LdLs~n-----~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 13 FCNLTQVPQ---VLNTTERLLLSFNYIRT------VTASSFPFLEQLQLLELGSQ-----YTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CCCSSCCCS---SCTTCCEEEEESCCCCE------ECSSSCSSCCSCSEEEECTT-----CCCCEECTTTTSSCTTCCEE
T ss_pred CCCCCCCCC---CCCCcCEEECCCCcCCc------cChhHCcccccCeEEeCCCC-----CCccccCHHHhcCCCCCCEE
Confidence 344555565 45799999999998643 24455899999999999994 234455 6789999999999
Q ss_pred ecCCCCCccccchhhhccCCccEEecCCCcCccccccc--cccCCCCceeecCCccCCCcCC-ccCCCCCCCCccCeeee
Q 007979 238 NLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQG--IGKLINMKHLLNERTDSLGHMP-AGIARLPSLRTLDEFHV 314 (582)
Q Consensus 238 ~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 314 (582)
+|++|.+.+..|..|+++++|++|+|++|......|.. ++.+++|++|++++|......+ ..++++++|++|++..+
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999955566889999999999999999855556665 8999999999999997655444 56899999999998775
Q ss_pred cCCCCcCCCCccccccc--cCCCccCeeeeeecCCCCChhHHHhcccCCCC------CcceEEEEeeecCCCCCC-----
Q 007979 315 SGGEGVDGRKGCRLESL--KNMELLQVCGIRRLGNVSDVDEAKRLKLDKKK------YLSCLRLWFDVKESGGRR----- 381 (582)
Q Consensus 315 ~~~~~~~~~~~~~~~~l--~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~----- 381 (582)
.... ..+..+..+ ++|+.|....+...+..+. .+..+. .|+.|+++.+........
T Consensus 159 ~i~~----~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 159 QIFL----VCEHELEPLQGKTLSFFSLAANSLYSRVSV-------DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp CCCC----CCSGGGHHHHHCSSCCCEECCSBSCCCCCC-------CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred cCCe----eCHHHcccccCCccceEECCCCcccccccc-------chhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 4432 223444444 4444444333322221111 111221 367777665421100000
Q ss_pred ---------------------ccchHHHHHhhCCC--CCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC
Q 007979 382 ---------------------KNEHDQLLLEALQP--PLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP 438 (582)
Q Consensus 382 ---------------------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~ 438 (582)
...........+.. +++|+.|++++|.+....|..+..+++|+.|++++|......+
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 00000001112222 3789999999999888778889999999999999998777666
Q ss_pred C-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccc
Q 007979 439 P-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMP 517 (582)
Q Consensus 439 ~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~ 517 (582)
. ++.+++|++|++++|. ++.++... ...+++|++|+++++ .+..++... +..++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------------~~~l~~L~~L~L~~N-~i~~~~~~~-------~~~l~ 362 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNL-LGELYSSN----------------FYGLPKVAYIDLQKN-HIAIIQDQT-------FKFLE 362 (844)
T ss_dssp TTTTTCSSCCEEEEESCC-CSCCCSCS----------------CSSCTTCCEEECCSC-CCCCCCSSC-------SCSCC
T ss_pred HHhcCCCCCCEEECCCCC-CCccCHHH----------------hcCCCCCCEEECCCC-CCCccChhh-------hcCCC
Confidence 4 8899999999999987 55443322 347899999999998 666665432 34789
Q ss_pred cccceecccccccccCCcCCCCCCCcceEEEeCCc
Q 007979 518 RLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 518 ~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~ 552 (582)
+|+.|++++| .++.++. +++|+.|++++|.
T Consensus 363 ~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 363 KLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CCCEEEEETC-CSCCCSS----CCSCSEEEEESCC
T ss_pred CCCEEECCCC-CCCcccC----CCCcchhccCCCC
Confidence 9999999995 5666654 6788888888764
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=221.76 Aligned_cols=300 Identities=17% Similarity=0.157 Sum_probs=228.2
Q ss_pred CCCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
.++..++.+.+.++.+..+ +..+.++++|++|++++|.+.. ..|..|.++++|++|+|++| .+..+|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n------~l~~~~ 96 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------VEPGAFNNLFNLRTLGLRSN------RLKLIP 96 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSS------CCCSCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE------eChhhhhCCccCCEEECCCC------cCCccC
Confidence 4577899999999888766 4578999999999999998643 24556899999999999994 555676
Q ss_pred c-cccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCC
Q 007979 226 R-NIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLP 304 (582)
Q Consensus 226 ~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~ 304 (582)
. .++++++|++|++++|.+....|..+.++++|++|++++|......|..+..+++|++|++++|......+..+..++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 4 478999999999999996566677899999999999999985555567889999999999999965444444588999
Q ss_pred CCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccc
Q 007979 305 SLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNE 384 (582)
Q Consensus 305 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (582)
+|+.|++..+..... .+..+ ..+..|+.+.+........... .......|+.|+++.+....
T Consensus 177 ~L~~L~l~~n~i~~~----~~~~~---~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~------- 238 (477)
T 2id5_A 177 GLIVLRLRHLNINAI----RDYSF---KRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSITHCNLTA------- 238 (477)
T ss_dssp TCCEEEEESCCCCEE----CTTCS---CSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEEESSCCCS-------
T ss_pred CCcEEeCCCCcCcEe----Chhhc---ccCcccceeeCCCCccccccCc----ccccCccccEEECcCCcccc-------
Confidence 999999877654321 12233 4445555555554332222111 12233489999998765331
Q ss_pred hHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCcc
Q 007979 385 HDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 385 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
.....+..+++|+.|++++|.+..+.+..+..+++|+.|++++|......|. +..+++|+.|+|++|. ++.++..
T Consensus 239 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 314 (477)
T 2id5_A 239 ---VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEES 314 (477)
T ss_dssp ---CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGG
T ss_pred ---cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHh
Confidence 1123466789999999999999888677788999999999999987776554 8899999999999997 7777765
Q ss_pred ccCCCCCCCCCCCCCcccccCcccccccccccc
Q 007979 464 ILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
.+ ..+++|++|++++++
T Consensus 315 ~~----------------~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VF----------------HSVGNLETLILDSNP 331 (477)
T ss_dssp GB----------------SCGGGCCEEECCSSC
T ss_pred Hc----------------CCCcccCEEEccCCC
Confidence 43 378999999999874
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.9e-24 Score=209.57 Aligned_cols=232 Identities=23% Similarity=0.319 Sum_probs=182.4
Q ss_pred cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCC
Q 007979 201 KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLI 280 (582)
Q Consensus 201 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 280 (582)
....+++|+|++ + .+..+|..++++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++.++
T Consensus 79 ~~~~l~~L~L~~-----n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRS-----V-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEES-----S-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCT
T ss_pred cccceeEEEccC-----C-CchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCc
Confidence 458899999998 3 666889999999999999999999 66999999999999999999997 668999999999
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccC
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLD 360 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~ 360 (582)
+|++|++++|...+.+|..++.. . .
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~------~-----~-------------------------------------------- 175 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLAST------D-----A-------------------------------------------- 175 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEE------C--------------------------------------------------
T ss_pred CCCEEECCCCCCccccChhHhhc------c-----c--------------------------------------------
Confidence 99999999987777776644320 0 0
Q ss_pred CCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCC
Q 007979 361 KKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPL 440 (582)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l 440 (582)
...+..+++|++|++++|.+..+ |.++..+++|+.|++++|......+.+
T Consensus 176 -----------------------------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 176 -----------------------------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp -----------------------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred -----------------------------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 00122356778888888887765 888888888888888888766544557
Q ss_pred CCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCccccccc
Q 007979 441 GKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLS 520 (582)
Q Consensus 441 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~ 520 (582)
+.+++|++|++++|...+.+|.. ...+++|++|++++|..+..++.. +..+++|+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~-----------------~~~l~~L~~L~L~~n~~~~~~p~~--------~~~l~~L~ 280 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPI-----------------FGGRAPLKRLILKDCSNLLTLPLD--------IHRLTQLE 280 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCC-----------------TTCCCCCCEEECTTCTTCCBCCTT--------GGGCTTCC
T ss_pred ccCCCCCEEECcCCcchhhhHHH-----------------hcCCCCCCEEECCCCCchhhcchh--------hhcCCCCC
Confidence 78888888888888866666553 236788888888888766665542 34789999
Q ss_pred ceecccccccccCCcCCCCCCCcceEEEeC
Q 007979 521 ALAIAVCPKLKALPDHIHQTTTLKGLSIWG 550 (582)
Q Consensus 521 ~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~ 550 (582)
.|++++|+.+..+|..+..+++|+.+.+..
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999998888889988888764
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.1e-24 Score=227.38 Aligned_cols=333 Identities=19% Similarity=0.135 Sum_probs=204.9
Q ss_pred CcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
...++++.+..+....++ ..+..+++|++|++++|.+... ++..|.++++|++|++++|.+.+. ..|..
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~ 118 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL------SSSWFGPLSSLKYLNLMGNPYQTL----GVTSL 118 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC------CHHHHTTCTTCCEEECTTCCCSSS----CSSCS
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc------CHHHhccCCCCcEEECCCCccccc----chhhh
Confidence 567888888888776654 5688999999999999986542 566689999999999999544321 34567
Q ss_pred ccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCcccccccccc------------------------CCCC
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALPQGIGK------------------------LINM 282 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~------------------------l~~L 282 (582)
++++++|++|++++|..++.+| ..++++++|++|++++|......|..++. +++|
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc
Confidence 8888888888888887666666 46888888888888887754445655554 4556
Q ss_pred ceeecCCccCCCcC--CccC-CCCCCCCccCeee----------------------------ecCCCC--cCCCCccccc
Q 007979 283 KHLLNERTDSLGHM--PAGI-ARLPSLRTLDEFH----------------------------VSGGEG--VDGRKGCRLE 329 (582)
Q Consensus 283 ~~L~l~~~~~~~~~--p~~i-~~l~~L~~L~~~~----------------------------~~~~~~--~~~~~~~~~~ 329 (582)
++|++++|...+.. |..+ ..+++|+.|++.. +..... ........+.
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 66666665433210 1111 1233344433322 110000 0000000000
Q ss_pred cc--------------------------------------------------cCCCccCeeeeeecCCCCChhHHHhccc
Q 007979 330 SL--------------------------------------------------KNMELLQVCGIRRLGNVSDVDEAKRLKL 359 (582)
Q Consensus 330 ~l--------------------------------------------------~~L~~L~~l~~~~~~~~~~~~~~~~~~l 359 (582)
.+ ..+..|+.+++....- ..........+
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~ 357 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM-VEEYLKNSACK 357 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC-CHHHHHHHTCT
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc-ccccccchhhh
Confidence 01 1122333333322111 11000112335
Q ss_pred CCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC
Q 007979 360 DKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP 439 (582)
Q Consensus 360 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~ 439 (582)
..++.|+.|+++.+... ........+..+++|++|++++|.+..+ |..+..+++|++|++++|.... +|.
T Consensus 358 ~~l~~L~~L~Ls~N~l~--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~-l~~ 427 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLR--------SMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRV-VKT 427 (549)
T ss_dssp TSSTTCCEEECTTSCCC--------CHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSC-CCT
T ss_pred hccccCcEEEccCCccc--------ccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCccc-ccc
Confidence 67788999998766432 1111223466788999999999988876 8888888889999998886432 221
Q ss_pred -C------------------CCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccc
Q 007979 440 -L------------------GKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEE 500 (582)
Q Consensus 440 -l------------------~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 500 (582)
+ +.+++|++|++++|. ++.+|. ...+++|++|+++++ +++.
T Consensus 428 ~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~------------------~~~l~~L~~L~Ls~N-~l~~ 487 (549)
T 2z81_A 428 CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD------------------ASLFPVLLVMKISRN-QLKS 487 (549)
T ss_dssp TSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC------------------GGGCTTCCEEECCSS-CCCC
T ss_pred hhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC------------------cccCccCCEEecCCC-ccCC
Confidence 1 245566666666654 444443 236899999999998 6776
Q ss_pred cccCcccCCCCCCcccccccceecccccc
Q 007979 501 WDYGITRTGHPFIDIMPRLSALAIAVCPK 529 (582)
Q Consensus 501 l~~~~~~~~~~~~~~~~~L~~L~l~~C~~ 529 (582)
++... +..+++|+.|++++|+-
T Consensus 488 ~~~~~-------~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 488 VPDGI-------FDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCTTG-------GGGCTTCCEEECCSSCB
T ss_pred cCHHH-------HhcCcccCEEEecCCCc
Confidence 65432 34889999999999763
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=9.7e-24 Score=208.58 Aligned_cols=280 Identities=19% Similarity=0.264 Sum_probs=206.7
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
...++++.+.++....++. +..+++|++|++++|.+.. ++. +..+++|++|++++| .+..+|. +
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-------~~~-~~~l~~L~~L~l~~n------~i~~~~~-~ 128 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-------ISA-LQNLTNLRELYLNED------NISDISP-L 128 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------CGG-GTTCTTCSEEECTTS------CCCCCGG-G
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-------chH-HcCCCcCCEEECcCC------cccCchh-h
Confidence 5689999999988887666 8999999999999998654 232 889999999999994 4555655 8
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
..+++|++|++++|.....++ .+..+++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+++|+.
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~ 203 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTSLHY 203 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCE
T ss_pred ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCccce
Confidence 899999999999997566665 59999999999999998 666655 88999999999999954 44444 677888888
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHH
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQL 388 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (582)
|++..+.... +..+..+. .|+.|+++.+....
T Consensus 204 L~l~~n~l~~---------~~~~~~~~----------------------------~L~~L~l~~n~l~~----------- 235 (347)
T 4fmz_A 204 FTAYVNQITD---------ITPVANMT----------------------------RLNSLKIGNNKITD----------- 235 (347)
T ss_dssp EECCSSCCCC---------CGGGGGCT----------------------------TCCEEECCSSCCCC-----------
T ss_pred eecccCCCCC---------CchhhcCC----------------------------cCCEEEccCCccCC-----------
Confidence 8765543222 11122333 33444443322110
Q ss_pred HHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCC
Q 007979 389 LLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIE 468 (582)
Q Consensus 389 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 468 (582)
. ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.... ++.+..+++|+.|++++|. ++..+...
T Consensus 236 ~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~---- 306 (347)
T 4fmz_A 236 L-SPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQ-LGNEDMEV---- 306 (347)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCGGGHHH----
T ss_pred C-cchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCc-CCCcChhH----
Confidence 0 1156778899999999888775 467888999999999985544 4668888999999999987 44443332
Q ss_pred CCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 469 SDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
...+++|++|++++|+ ++.++. +..+++|+.|++++|+
T Consensus 307 ------------l~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 ------------IGGLTNLTTLFLSQNH-ITDIRP---------LASLSKMDSADFANQV 344 (347)
T ss_dssp ------------HHTCTTCSEEECCSSS-CCCCGG---------GGGCTTCSEESSSCC-
T ss_pred ------------hhccccCCEEEccCCc-cccccC---------hhhhhccceeehhhhc
Confidence 2368899999999984 655543 3378999999999875
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=230.55 Aligned_cols=132 Identities=22% Similarity=0.192 Sum_probs=99.2
Q ss_pred CcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc-
Q 007979 149 DEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR- 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~- 226 (582)
...++++.+..+....++ ..+.++++|++|++++|.+.. ..|..|.++++|++|++++| .+..+|.
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n------~l~~l~~~ 118 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------LALGAFSGLSSLQKLVAVET------NLASLENF 118 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTS------CCCCSTTC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc------cCHhhhcCcccccccccccc------ccccCCCc
Confidence 466888888877766554 467889999999999997543 24455888999999999984 4445553
Q ss_pred cccccCCCCEEecCCCCCcc-ccchhhhccCCccEEecCCCcCccccccccccCCCC----ceeecCCccC
Q 007979 227 NIEKLVHLRYLNLSSVTLIR-KLPETLCELYNLEKLDISYCINLKALPQGIGKLINM----KHLLNERTDS 292 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L----~~L~l~~~~~ 292 (582)
.++++++|++|++++|.+.. .+|..++++++|++|++++|......|..++.+++| +.|++++|..
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 58889999999999988433 478889999999999999987444445667777777 6777777644
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7.8e-24 Score=217.67 Aligned_cols=307 Identities=19% Similarity=0.250 Sum_probs=176.8
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
...++++.+.++....++. +..+++|+.|++++|.+... .+ +..+++|++|++++| .+..+|. +
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~--~~~l~~L~~L~L~~n------~l~~~~~-~ 130 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI------TP--LANLTNLTGLTLFNN------QITDIDP-L 130 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC------GG--GTTCTTCCEEECCSS------CCCCCGG-G
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC------hh--hcCCCCCCEEECCCC------CCCCChH-H
Confidence 4567777777776666555 77777888888877765432 22 677777777777773 3444443 6
Q ss_pred cccCCCCEEecCCCCCccccch--------------------hhhccCCccEEecCCCcCccccccccccCCCCceeecC
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPE--------------------TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNE 288 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~--------------------~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~ 288 (582)
+.+++|++|++++|. +..+|. .+.++++|++|++++|. +..++. +..+++|++|+++
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIAT 207 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECC
T ss_pred cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEec
Confidence 677777777777776 444542 14444555555555544 333332 4455555555555
Q ss_pred CccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceE
Q 007979 289 RTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCL 368 (582)
Q Consensus 289 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 368 (582)
+|......| ++.+++|++|++.++.... +..+..+.+|+.+.+....- .... .+..++.|+.|
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L 270 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKD---------IGTLASLTNLTDLDLANNQI-SNLA-----PLSGLTKLTEL 270 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCC-CCCG-----GGTTCTTCSEE
T ss_pred CCccccccc--ccccCCCCEEECCCCCccc---------chhhhcCCCCCEEECCCCcc-ccch-----hhhcCCCCCEE
Confidence 553322222 3445555555544332211 12233333444443333211 1111 14455666666
Q ss_pred EEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcce
Q 007979 369 RLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEK 448 (582)
Q Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~ 448 (582)
+++.+.... . ..+..+++|+.|++++|.+... +. +..+++|+.|++++|...+..| ++.+++|+.
T Consensus 271 ~l~~n~l~~-----------~-~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 271 KLGANQISN-----------I-SPLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335 (466)
T ss_dssp ECCSSCCCC-----------C-GGGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred ECCCCccCc-----------c-ccccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCE
Confidence 665543221 0 1145566777777777776665 32 5677777777777775544333 666777777
Q ss_pred eecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 449 LYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 449 L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
|++++|. ++.++ ....+++|+.|++++| .+..+.. +..+++|+.|++.+|+
T Consensus 336 L~l~~n~-l~~~~------------------~l~~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 336 LFFYNNK-VSDVS------------------SLANLTNINWLSAGHN-QISDLTP---------LANLTRITQLGLNDQA 386 (466)
T ss_dssp EECCSSC-CCCCG------------------GGTTCTTCCEEECCSS-CCCBCGG---------GTTCTTCCEEECCCEE
T ss_pred eECCCCc-cCCch------------------hhccCCCCCEEeCCCC-ccCccch---------hhcCCCCCEEeccCCc
Confidence 7777775 44332 1447899999999998 5555443 3488999999999965
Q ss_pred ccccCCcC
Q 007979 529 KLKALPDH 536 (582)
Q Consensus 529 ~L~~lp~~ 536 (582)
++.+|..
T Consensus 387 -~~~~p~~ 393 (466)
T 1o6v_A 387 -WTNAPVN 393 (466)
T ss_dssp -EECCCBC
T ss_pred -ccCCchh
Confidence 5566643
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.7e-23 Score=208.93 Aligned_cols=302 Identities=17% Similarity=0.142 Sum_probs=140.4
Q ss_pred ccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcccc
Q 007979 169 TCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 169 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l 248 (582)
+.++++|++|++++|.+.. +|. +..+++|++|++++|. +..+| ++.+++|++|++++|. +..+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~-------~~~-l~~l~~L~~L~Ls~n~------l~~~~--~~~l~~L~~L~Ls~N~-l~~~ 100 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD-------MTG-IEKLTGLTKLICTSNN------ITTLD--LSQNTNLTYLACDSNK-LTNL 100 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC-------CTT-GGGCTTCSEEECCSSC------CSCCC--CTTCTTCSEEECCSSC-CSCC
T ss_pred hhHcCCCCEEEccCCCccc-------Chh-hcccCCCCEEEccCCc------CCeEc--cccCCCCCEEECcCCC-Ccee
Confidence 3444555555555554332 121 4455555555555522 22232 4455555555555555 3334
Q ss_pred chhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCcccc
Q 007979 249 PETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRL 328 (582)
Q Consensus 249 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 328 (582)
| ++++++|++|++++|. +..+| ++.+++|++|++++|... .++ ++.+++|+.|++..+.... ..
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~~------~~-- 164 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT------KL-- 164 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCCC------CC--
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCccc------cc--
Confidence 3 4555555555555554 33343 455555555555555322 222 4445555555443331111 00
Q ss_pred ccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEe
Q 007979 329 ESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYG 408 (582)
Q Consensus 329 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 408 (582)
.+..+..|+.+.+.... +... .+..++.|+.|.+..+.... ..+..+++|+.|++++|.
T Consensus 165 -~~~~l~~L~~L~ls~n~-l~~l------~l~~l~~L~~L~l~~N~l~~-------------~~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNK-ITEL------DVSQNKLLNRLNCDTNNITK-------------LDLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp -CCTTCTTCCEEECCSSC-CCCC------CCTTCTTCCEEECCSSCCSC-------------CCCTTCTTCSEEECCSSC
T ss_pred -ccccCCcCCEEECCCCc-ccee------ccccCCCCCEEECcCCcCCe-------------eccccCCCCCEEECcCCc
Confidence 12222233333222211 1111 13444555555555443221 024455667777777666
Q ss_pred CCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceee----------cccccCceEeCccccCCCCCCCCCCCCC
Q 007979 409 GNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLY----------ISDMKSVKRVGNEILGIESDHHDSSSSS 478 (582)
Q Consensus 409 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~----------L~~~~~l~~~~~~~~~~~~~~~~~~~~~ 478 (582)
+..+ | +..+++|+.|++++|...+. | ++.+++|+.|+ +++|..++.+|
T Consensus 224 l~~i-p--~~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----------------- 281 (457)
T 3bz5_A 224 LTEI-D--VTPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----------------- 281 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----------------
T ss_pred cccc-C--ccccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----------------
Confidence 6664 5 55666677777776654432 2 33344444333 33333333322
Q ss_pred cccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCC
Q 007979 479 SVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 479 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C 551 (582)
...+++|+.|++++|+.+..++.....-..-.+..+++|+.|++++ ++++.++ +..+++|+.|+++++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCSS
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCCC
Confidence 1255667777777766555555321111111234556666666665 3455553 555666777766554
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4e-24 Score=214.79 Aligned_cols=304 Identities=13% Similarity=0.090 Sum_probs=228.6
Q ss_pred CcceeEEEEEecCCCccccc-ccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cc
Q 007979 149 DEKVCHLMLVIGLGASFPVS-TCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~ 226 (582)
...++.+.+.++....+|.. +..+++|++|++++|.+.. ..+..|..+++|++|++++| .+..+ |.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n------~l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFN------AIRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSS------CCCCCCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc------cChhhccCCCCcCEEECCCC------CCCcCCHH
Confidence 46788999999888887765 5789999999999998643 24445899999999999994 44445 46
Q ss_pred cccccCCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPS 305 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 305 (582)
.++.+++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|... .++ ++.+++
T Consensus 112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGGCTT
T ss_pred HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc--cccccc
Confidence 68999999999999999 7788866 589999999999999844444566899999999999999543 333 566788
Q ss_pred CCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccch
Q 007979 306 LRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEH 385 (582)
Q Consensus 306 L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 385 (582)
|+.|++..+... .+.....|+.+.+.... +... .......|+.|++..+....
T Consensus 188 L~~L~l~~n~l~------------~~~~~~~L~~L~l~~n~-l~~~------~~~~~~~L~~L~l~~n~l~~-------- 240 (390)
T 3o6n_A 188 LFHANVSYNLLS------------TLAIPIAVEELDASHNS-INVV------RGPVNVELTILKLQHNNLTD-------- 240 (390)
T ss_dssp CSEEECCSSCCS------------EEECCSSCSEEECCSSC-CCEE------ECCCCSSCCEEECCSSCCCC--------
T ss_pred cceeeccccccc------------ccCCCCcceEEECCCCe-eeec------cccccccccEEECCCCCCcc--------
Confidence 888876543221 22222334444433221 1111 11234678899888765431
Q ss_pred HHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcccc
Q 007979 386 DQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEIL 465 (582)
Q Consensus 386 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 465 (582)
...+..+++|++|++++|.+....|..+..+++|+.|++++|...........+++|++|++++|. ++.+|..+
T Consensus 241 ----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 314 (390)
T 3o6n_A 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ- 314 (390)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH-
T ss_pred ----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccc-
Confidence 135667899999999999998877889999999999999999776654447789999999999997 66666542
Q ss_pred CCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 466 GIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
..+++|++|+++++ .++.++ +..+++|+.|++++++
T Consensus 315 ----------------~~l~~L~~L~L~~N-~i~~~~----------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 315 ----------------PQFDRLENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ----------------HHHTTCSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred ----------------cccCcCCEEECCCC-ccceeC----------chhhccCCEEEcCCCC
Confidence 37899999999998 466554 2378999999999854
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.7e-23 Score=226.26 Aligned_cols=270 Identities=17% Similarity=0.094 Sum_probs=178.0
Q ss_pred ecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEe
Q 007979 159 IGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLN 238 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~ 238 (582)
+.....+|..+. +++++|++++|.+... ++..|.++++|++|++++|.+.+ ..|..++++++|++|+
T Consensus 13 ~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 13 HLKLTQVPDDLP--TNITVLNLTHNQLRRL------PAANFTRYSQLTSLDVGFNTISK-----LEPELCQKLPMLKVLN 79 (680)
T ss_dssp SSCCSSCCSCSC--TTCSEEECCSSCCCCC------CGGGGGGGTTCSEEECCSSCCCC-----CCTTHHHHCTTCCEEE
T ss_pred CCCccccccccC--CCCcEEECCCCCCCCc------CHHHHhCCCcCcEEECCCCccCc-----cCHHHHhcccCcCEEE
Confidence 334455666553 7899999999986542 44558999999999999954332 3467889999999999
Q ss_pred cCCCCCccccch-hhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecC
Q 007979 239 LSSVTLIRKLPE-TLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSG 316 (582)
Q Consensus 239 L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 316 (582)
+++|. +..+|. .|+++++|++|++++|. +..+| ..++++++|++|++++|......|..++.+++|++|++..+..
T Consensus 80 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 80 LQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred CCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 99998 777776 59999999999999998 45555 6789999999999999987777777889999999999776543
Q ss_pred CCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCC
Q 007979 317 GEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPP 396 (582)
Q Consensus 317 ~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (582)
.. ..+..+. ...+..|+.+.+.... +... ....+..+..|+.+.+...... ......+...+ ..
T Consensus 158 ~~----~~~~~~~-~~~~~~L~~L~L~~n~-l~~~---~~~~~~~l~~L~~L~l~~~~l~------~~~~~~~~~~l-~~ 221 (680)
T 1ziw_A 158 QA----LKSEELD-IFANSSLKKLELSSNQ-IKEF---SPGCFHAIGRLFGLFLNNVQLG------PSLTEKLCLEL-AN 221 (680)
T ss_dssp CC----BCHHHHG-GGTTCEESEEECTTCC-CCCB---CTTGGGGSSEECEEECTTCCCH------HHHHHHHHHHH-TT
T ss_pred cc----cCHHHhh-ccccccccEEECCCCc-cccc---ChhhhhhhhhhhhhhccccccC------hhhHHHHHHHh-hh
Confidence 22 1111111 1123344444443321 1111 1113344556666655432110 01111122222 24
Q ss_pred CCCcEEEEeeEeCCCcCCchhhcCcC--CcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEe
Q 007979 397 LNLKELFIGSYGGNTVSPSWMMSLTN--LRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRV 460 (582)
Q Consensus 397 ~~L~~L~l~~~~~~~~~p~~~~~l~~--L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~ 460 (582)
++|++|++++|.+....|.++..++. |+.|++++|......+. ++.+++|++|++++|. +..+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 287 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHL 287 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCcc
Confidence 67778888777777665667766644 88888887766555443 6777788888887776 4444
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=3.1e-24 Score=208.13 Aligned_cols=256 Identities=20% Similarity=0.166 Sum_probs=159.2
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCC-CccccccccccccccccccCCCCEEecCCCCCccccchh
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGN-WSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPET 251 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 251 (582)
.+++.|+++++.+.... . +|..|..+++|++|++++ |.+.+ .+|..++++++|++|++++|.+.+.+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~---~-~~~~l~~l~~L~~L~L~~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY---P-IPSSLANLPYLNFLYIGGINNLVG-----PIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCE---E-CCGGGGGCTTCSEEEEEEETTEES-----CCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCc---c-cChhHhCCCCCCeeeCCCCCcccc-----cCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 46788888887764310 1 344477888888888874 43332 56777888888888888888855578888
Q ss_pred hhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCC-CCCccCeeeecCCCCcCCCCcccccc
Q 007979 252 LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLP-SLRTLDEFHVSGGEGVDGRKGCRLES 330 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~~~~ 330 (582)
++++++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|+.|++..+.... ..+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~----~~~----- 191 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KIP----- 191 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----ECC-----
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----cCC-----
Confidence 88888888888888875557787888888888888888866557777777776 77777644322110 000
Q ss_pred ccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCC
Q 007979 331 LKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGN 410 (582)
Q Consensus 331 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 410 (582)
..+..+. |++|++++|.+.
T Consensus 192 ------------------------------------------------------------~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 192 ------------------------------------------------------------PTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp ------------------------------------------------------------GGGGGCC-CSEEECCSSEEE
T ss_pred ------------------------------------------------------------hHHhCCc-ccEEECcCCccc
Confidence 0111122 566666666555
Q ss_pred CcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccc
Q 007979 411 TVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSL 490 (582)
Q Consensus 411 ~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 490 (582)
...|..+..+++|+.|++++|.....++.+..+++|++|++++|.....+|.. +..+++|++|
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-----------------l~~l~~L~~L 273 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-----------------LTQLKFLHSL 273 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-----------------GGGCTTCCEE
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-----------------HhcCcCCCEE
Confidence 44456666666666666666665555555666666666666666532233332 2255666666
Q ss_pred ccccccccc-ccccCcccCCCCCCcccccccceecccccccccCC
Q 007979 491 FIEDLPELE-EWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP 534 (582)
Q Consensus 491 ~l~~~~~L~-~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp 534 (582)
+++++ ++. .++. ...+++|+.|++.+++.+...|
T Consensus 274 ~Ls~N-~l~~~ip~---------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 274 NVSFN-NLCGEIPQ---------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCSS-EEEEECCC---------STTGGGSCGGGTCSSSEEESTT
T ss_pred ECcCC-cccccCCC---------CccccccChHHhcCCCCccCCC
Confidence 66666 332 2222 2256666666666665554433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.3e-23 Score=222.58 Aligned_cols=303 Identities=13% Similarity=0.094 Sum_probs=226.5
Q ss_pred cceeEEEEEecCCCccccc-ccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-cc
Q 007979 150 EKVCHLMLVIGLGASFPVS-TCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RN 227 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~ 227 (582)
...+.+.+.++....+|.. +..+++|++|++++|.+.. ..+..|..+++|++|+|++| .+..+| ..
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~ 118 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFN------AIRYLPPHV 118 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSS------CCCCCCTTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCC------cCCCCCHHH
Confidence 5567788877777777765 5789999999999998643 24545899999999999994 444454 56
Q ss_pred ccccCCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCC
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSL 306 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 306 (582)
++.+++|++|++++|. +..+|.. ++++++|++|++++|......|..++.+++|++|++++|.. ..++ ++.+++|
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L 194 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSL 194 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTC
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhh
Confidence 7999999999999999 6777765 69999999999999985555566799999999999999954 3333 4567888
Q ss_pred CccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchH
Q 007979 307 RTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHD 386 (582)
Q Consensus 307 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 386 (582)
+.|++..+.. ..+.....|+.+.+.... +... .......|+.|.+..+....
T Consensus 195 ~~L~l~~n~l------------~~l~~~~~L~~L~ls~n~-l~~~------~~~~~~~L~~L~L~~n~l~~--------- 246 (597)
T 3oja_B 195 FHANVSYNLL------------STLAIPIAVEELDASHNS-INVV------RGPVNVELTILKLQHNNLTD--------- 246 (597)
T ss_dssp SEEECCSSCC------------SEEECCTTCSEEECCSSC-CCEE------ECSCCSCCCEEECCSSCCCC---------
T ss_pred hhhhcccCcc------------ccccCCchhheeeccCCc-cccc------ccccCCCCCEEECCCCCCCC---------
Confidence 8887654322 122233334444433321 1110 01123578888887765431
Q ss_pred HHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccC
Q 007979 387 QLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILG 466 (582)
Q Consensus 387 ~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 466 (582)
+..+..+++|+.|++++|.+....|..+..+++|+.|+|++|......+.++.+++|+.|+|++|. +..+|..+
T Consensus 247 ---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~-- 320 (597)
T 3oja_B 247 ---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ-- 320 (597)
T ss_dssp ---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH--
T ss_pred ---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccc--
Confidence 245677899999999999998887889999999999999999776654457789999999999997 66666543
Q ss_pred CCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 467 IESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
..+++|++|++++| .+..++ +..+++|+.|++++++
T Consensus 321 ---------------~~l~~L~~L~L~~N-~l~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 321 ---------------PQFDRLENLYLDHN-SIVTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---------------HHHTTCSEEECCSS-CCCCCC----------CCTTCCCSEEECCSSC
T ss_pred ---------------ccCCCCCEEECCCC-CCCCcC----------hhhcCCCCEEEeeCCC
Confidence 37899999999998 465554 2378999999999865
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.2e-23 Score=203.95 Aligned_cols=251 Identities=20% Similarity=0.147 Sum_probs=191.4
Q ss_pred cceeEEEEEecCCC---cccccccCCCCceEEEEeC-CcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 150 EKVCHLMLVIGLGA---SFPVSTCRIKRMRSLFISG-NMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 150 ~~~~~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
..++++.+.++... .+|..+.++++|++|++++ |.+... +|..|..+++|++|++++|.+.+ .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~-----~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP------IPPAIAKLTQLHYLYITHTNVSG-----AIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC------CCGGGGGCTTCSEEEEEEECCEE-----ECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc------CChhHhcCCCCCEEECcCCeeCC-----cCC
Confidence 67899999988776 5788999999999999995 764322 45558999999999999944332 688
Q ss_pred ccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCC-CCceeecCCccCCCcCCccCCCCC
Q 007979 226 RNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLI-NMKHLLNERTDSLGHMPAGIARLP 304 (582)
Q Consensus 226 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~i~~l~ 304 (582)
..++++++|++|++++|.+.+.+|..++++++|++|++++|.....+|..++.++ +|++|++++|.....+|..+..++
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 8999999999999999996668999999999999999999985558999999998 999999999987778888887776
Q ss_pred CCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccc
Q 007979 305 SLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNE 384 (582)
Q Consensus 305 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 384 (582)
|+.|++..+....
T Consensus 199 -L~~L~Ls~N~l~~------------------------------------------------------------------ 211 (313)
T 1ogq_A 199 -LAFVDLSRNMLEG------------------------------------------------------------------ 211 (313)
T ss_dssp -CSEEECCSSEEEE------------------------------------------------------------------
T ss_pred -ccEEECcCCcccC------------------------------------------------------------------
Confidence 7777654322110
Q ss_pred hHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCcc
Q 007979 385 HDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 385 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
..+..+..+++|+.|++++|.+... +..+..+++|++|++++|...+.+|. +..+++|++|++++|...+.+|..
T Consensus 212 ---~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 212 ---DASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp ---CCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ---cCCHHHhcCCCCCEEECCCCceeee-cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 0112344566777777777777655 34466778888888888876655554 777788888888887743355542
Q ss_pred ccCCCCCCCCCCCCCcccccCcccccccccccccccc
Q 007979 464 ILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEE 500 (582)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 500 (582)
..+++|+.|++.+++.+..
T Consensus 288 ------------------~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 ------------------GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ------------------TTGGGSCGGGTCSSSEEES
T ss_pred ------------------ccccccChHHhcCCCCccC
Confidence 2677888888888765543
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=3.2e-23 Score=211.33 Aligned_cols=273 Identities=18% Similarity=0.158 Sum_probs=200.6
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
+..+++|++|++++| .+..+| .++.+++|++|++++|. +..+| ++.+++|++|++++|. +..+| ++.
T Consensus 38 ~~~l~~L~~L~Ls~n------~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~ 104 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS------SITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD--VTP 104 (457)
T ss_dssp HHHHTTCCEEECCSS------CCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC--CTT
T ss_pred hhHcCCCCEEEccCC------CcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee--cCC
Confidence 677899999999994 455566 68999999999999999 77776 8999999999999998 66665 889
Q ss_pred CCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcc
Q 007979 279 LINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLK 358 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 358 (582)
+++|++|++++|.. ..+| ++.+++|++|++..+.... + .+..+..|+.+.+.....+... .
T Consensus 105 l~~L~~L~L~~N~l-~~l~--~~~l~~L~~L~l~~N~l~~---------l-~l~~l~~L~~L~l~~n~~~~~~------~ 165 (457)
T 3bz5_A 105 LTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLTE---------I-DVSHNTQLTELDCHLNKKITKL------D 165 (457)
T ss_dssp CTTCCEEECCSSCC-SCCC--CTTCTTCCEEECTTSCCSC---------C-CCTTCTTCCEEECTTCSCCCCC------C
T ss_pred CCcCCEEECCCCcC-Ceec--CCCCCcCCEEECCCCccce---------e-ccccCCcCCEEECCCCCccccc------c
Confidence 99999999999954 4455 7889999999876554332 1 2445555666655544333332 3
Q ss_pred cCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC
Q 007979 359 LDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP 438 (582)
Q Consensus 359 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~ 438 (582)
+..++.|+.|+++.+.... + .+..+++|+.|++++|.+..+ + +..+++|+.|++++|...+ +|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-----------l--~l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-----------L--DVSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-----------C--CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC
T ss_pred cccCCcCCEEECCCCccce-----------e--ccccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC
Confidence 6678899999998765431 1 166788999999999998876 3 7789999999999997666 66
Q ss_pred CCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcc----------cccccccccccccccccCcccC
Q 007979 439 PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPK----------LQSLFIEDLPELEEWDYGITRT 508 (582)
Q Consensus 439 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------L~~L~l~~~~~L~~l~~~~~~~ 508 (582)
++.+++|+.|++++|. ++.++.. .+++ |+.|++++|+.+..++
T Consensus 229 -~~~l~~L~~L~l~~N~-l~~~~~~-------------------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------ 281 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP-LTELDVS-------------------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------ 281 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CSCCCCT-------------------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE------
T ss_pred -ccccCCCCEEEeeCCc-CCCcCHH-------------------HCCCCCEEeccCCCCCEEECCCCccCCccc------
Confidence 8899999999999987 5555422 3444 4555555555444443
Q ss_pred CCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcch
Q 007979 509 GHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDLL 554 (582)
Q Consensus 509 ~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~l 554 (582)
...+++|+.|++++|+.+..+|.. .++|+.|++++|+++
T Consensus 282 ----~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 282 ----AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDLSQNPKL 320 (457)
T ss_dssp ----CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCCTTCTTC
T ss_pred ----ccccccCCEEECCCCcccceeccC---CCcceEechhhcccC
Confidence 237899999999999888777642 233444444444433
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=6.2e-23 Score=201.23 Aligned_cols=139 Identities=22% Similarity=0.180 Sum_probs=66.8
Q ss_pred EEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccC
Q 007979 154 HLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLV 232 (582)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~ 232 (582)
.+....+....+|..+ .++++.|++++|.+.. ..+..|.++++|++|++++| .+..+ |..++.++
T Consensus 37 ~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~------~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISE------LRKDDFKGLQHLYALVLVNN------KISKIHEKAFSPLR 102 (332)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCSS------CCCEECGGGSTTCT
T ss_pred EEECCCCCccccCCCC--CCCCeEEECCCCcCCc------cCHhHhhCCCCCcEEECCCC------ccCccCHhHhhCcC
Confidence 3333333334444433 2455666666555321 12333555566666666552 22222 44555556
Q ss_pred CCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCC--CcCCccCCCCCCCCcc
Q 007979 233 HLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSL--GHMPAGIARLPSLRTL 309 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~~p~~i~~l~~L~~L 309 (582)
+|++|++++|. +..+|..+. ++|++|++++|. +..+|. .+..+++|++|++++|... ...|..+..+ +|+.|
T Consensus 103 ~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 66666666555 445554443 556666666555 333333 3455566666666555332 1233333333 45554
Q ss_pred Ce
Q 007979 310 DE 311 (582)
Q Consensus 310 ~~ 311 (582)
++
T Consensus 178 ~l 179 (332)
T 2ft3_A 178 RI 179 (332)
T ss_dssp BC
T ss_pred EC
Confidence 43
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.1e-23 Score=202.31 Aligned_cols=124 Identities=26% Similarity=0.438 Sum_probs=90.2
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchh
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPET 251 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 251 (582)
.++++.|++++|.+.. +|..+..+++|++|+|++| .+..+|..++.+++|++|++++|. +..+|..
T Consensus 80 ~~~l~~L~L~~n~l~~-------lp~~l~~l~~L~~L~L~~n------~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------FPDQAFRLSHLQHMTIDAA------GLMELPDTMQQFAGLETLTLARNP-LRALPAS 145 (328)
T ss_dssp STTCCEEEEESSCCSS-------CCSCGGGGTTCSEEEEESS------CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred ccceeEEEccCCCchh-------cChhhhhCCCCCEEECCCC------CccchhHHHhccCCCCEEECCCCc-cccCcHH
Confidence 4678889999888642 3333677899999999983 555788889999999999999998 6688989
Q ss_pred hhccCCccEEecCCCcCcccccccccc---------CCCCceeecCCccCCCcCCccCCCCCCCCccC
Q 007979 252 LCELYNLEKLDISYCINLKALPQGIGK---------LINMKHLLNERTDSLGHMPAGIARLPSLRTLD 310 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 310 (582)
++++++|++|++++|.....+|..++. +++|++|++++|.. ..+|..++.+++|++|+
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLK 212 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEE
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEE
Confidence 999999999999998878888877654 55666666555532 24444444444433333
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=9.6e-23 Score=218.85 Aligned_cols=368 Identities=15% Similarity=0.106 Sum_probs=227.0
Q ss_pred cCCCcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc
Q 007979 146 NSLDEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI 224 (582)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 224 (582)
..++..++++.+..+.+..++ ..|.++++|++|++++|.+.. +.+.+|.++++|++|+|++| .+..+
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------i~~~~f~~L~~L~~L~Ls~N------~l~~l 115 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHLSTLILTGN------PIQSL 115 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTC------CCCEE
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC------cChhHhcCCCCCCEEEccCC------cCCCC
Confidence 456788999999999888776 478999999999999998643 34556899999999999994 55566
Q ss_pred c-ccccccCCCCEEecCCCCCccccch-hhhccCCccEEecCCCcCcc-ccccccccCCCCceeecCCccCCCcCCccCC
Q 007979 225 P-RNIEKLVHLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLK-ALPQGIGKLINMKHLLNERTDSLGHMPAGIA 301 (582)
Q Consensus 225 p-~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~ 301 (582)
| ..++++++|++|++++|. +..+|. .|+++++|++|++++|.... .+|..++.+++|++|++++|......|..+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 6 457999999999999999 666664 58999999999999998432 3678889999999999999865443333333
Q ss_pred CCCCCCccCeeeecCC------------------------------------------------------CCcCCCCc--
Q 007979 302 RLPSLRTLDEFHVSGG------------------------------------------------------EGVDGRKG-- 325 (582)
Q Consensus 302 ~l~~L~~L~~~~~~~~------------------------------------------------------~~~~~~~~-- 325 (582)
.+.+++.+........ ........
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 2222221110000000 00000000
Q ss_pred -------------------------cccccc----------------------cCCCccCeeeeeecCC----CCChh--
Q 007979 326 -------------------------CRLESL----------------------KNMELLQVCGIRRLGN----VSDVD-- 352 (582)
Q Consensus 326 -------------------------~~~~~l----------------------~~L~~L~~l~~~~~~~----~~~~~-- 352 (582)
..+..+ ..++.|....+..... .....
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 000000 0111111111110000 00000
Q ss_pred ------HHHhcccCCCCCcceEEEEeeecCCCC---------------------------------C-------CccchH
Q 007979 353 ------EAKRLKLDKKKYLSCLRLWFDVKESGG---------------------------------R-------RKNEHD 386 (582)
Q Consensus 353 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~---------------------------------~-------~~~~~~ 386 (582)
.........++.|+.+.++.+...... . ..+...
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 000011223344444444321110000 0 000000
Q ss_pred HHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCc-CCC-CCCCCCcceeecccccCceEeCccc
Q 007979 387 QLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQ-LPP-LGKLPSLEKLYISDMKSVKRVGNEI 464 (582)
Q Consensus 387 ~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~l~~~~~~~ 464 (582)
......+..+.+++.++++.|.+....|..+..+++|+.|++++|..... .|. ++.+++|++|+|++|. ++.++...
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH
Confidence 00112344556677777777776666566677888888888888865443 333 7888999999999886 66665543
Q ss_pred cCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccC-CcCCCCC-CC
Q 007979 465 LGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKAL-PDHIHQT-TT 542 (582)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l-p~~~~~l-~~ 542 (582)
+ .++++|++|+|+++ +++.++... +..+++|+.|+++++ +++.+ |..+..+ ++
T Consensus 514 f----------------~~l~~L~~L~Ls~N-~l~~l~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 514 F----------------NSLSSLQVLNMSHN-NFFSLDTFP-------YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS 568 (635)
T ss_dssp T----------------TTCTTCCEEECTTS-CCCBCCCGG-------GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTT
T ss_pred H----------------cCCCCCCEEECCCC-cCCCCChhH-------HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCc
Confidence 3 37899999999998 777776543 347899999999995 56665 5667776 68
Q ss_pred cceEEEeCCc
Q 007979 543 LKGLSIWGCD 552 (582)
Q Consensus 543 L~~L~i~~C~ 552 (582)
|+.|+++++|
T Consensus 569 L~~L~L~~Np 578 (635)
T 4g8a_A 569 LAFLNLTQND 578 (635)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEeeCCC
Confidence 9999998633
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.3e-22 Score=197.11 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC-CCCCCCCcceeecccccCceEeCccccCCCCCCCCCC
Q 007979 397 LNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP-PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSS 475 (582)
Q Consensus 397 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 475 (582)
++|++|++++|.+....|.++..+++|+.|++++|......+ .+..+++|++|++++|. ++.+|..
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~------------ 258 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG------------ 258 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT------------
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh------------
Confidence 345555555555444434445555555555555554433333 24445555555555553 3333332
Q ss_pred CCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccc--cCCcCCCCCCCcceEEEeCC
Q 007979 476 SSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLK--ALPDHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 476 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~--~lp~~~~~l~~L~~L~i~~C 551 (582)
...+++|++|+++++ .++.++........ .....++|+.|++.+.+... ..|..+..+++|+.++++++
T Consensus 259 -----l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~-~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 -----LADHKYIQVVYLHNN-NISAIGSNDFCPPG-YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -----TTTCSSCCEEECCSS-CCCCCCTTSSSCSS-CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -----hccCCCcCEEECCCC-cCCccChhhcCCcc-cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 113455555555544 34444322211000 01123455555555543211 12344555556666665543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.4e-20 Score=184.33 Aligned_cols=292 Identities=15% Similarity=0.081 Sum_probs=190.1
Q ss_pred eEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-ccccccc
Q 007979 153 CHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKL 231 (582)
Q Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L 231 (582)
+.+.........+|..+ .+.++.|++++|.+... .+..|.++++|++|++++| .+..+ |..++.+
T Consensus 34 ~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l 99 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINN------KISKISPGAFAPL 99 (330)
T ss_dssp TEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSS------CCCCBCTTTTTTC
T ss_pred eEEEecCCCccccCccC--CCCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCC------cCCeeCHHHhcCC
Confidence 33433333444555444 25788888888875432 3334778888888888884 34344 6778888
Q ss_pred CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCC--cCCccCCCCCCCCc
Q 007979 232 VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLG--HMPAGIARLPSLRT 308 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~ 308 (582)
++|++|++++|. +..+|..+. ++|++|++++|. +..++ ..+..+++|++|++++|.... ..+..+..+++|+.
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCc-CCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 888888888888 677776654 688888888887 44444 457888888888888875432 44556777788888
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHH
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQL 388 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (582)
|++..+..... +..+ .+.|+.|+++.+... ..
T Consensus 176 L~l~~n~l~~l-----~~~~---------------------------------~~~L~~L~l~~n~l~----------~~ 207 (330)
T 1xku_A 176 IRIADTNITTI-----PQGL---------------------------------PPSLTELHLDGNKIT----------KV 207 (330)
T ss_dssp EECCSSCCCSC-----CSSC---------------------------------CTTCSEEECTTSCCC----------EE
T ss_pred EECCCCccccC-----Cccc---------------------------------cccCCEEECCCCcCC----------cc
Confidence 77654432210 1000 023333333322111 01
Q ss_pred HHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCC
Q 007979 389 LLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIE 468 (582)
Q Consensus 389 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 468 (582)
.+..+..+++|++|++++|.+....+.++..+++|+.|++++|........+..+++|++|++++|. ++.++...+...
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~ 286 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP 286 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc
Confidence 1235667889999999999998885668999999999999999766444458899999999999987 777776654321
Q ss_pred CCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccc
Q 007979 469 SDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVC 527 (582)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C 527 (582)
. ....+++|+.|++.++| +..+.... +.+..+++|+.++++++
T Consensus 287 ~----------~~~~~~~l~~l~l~~N~-~~~~~i~~-----~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 G----------YNTKKASYSGVSLFSNP-VQYWEIQP-----STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S----------CCTTSCCCSEEECCSSS-SCGGGSCG-----GGGTTCCCGGGEEC---
T ss_pred c----------cccccccccceEeecCc-ccccccCc-----cccccccceeEEEeccc
Confidence 1 01246789999999885 33322111 11346788999988874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1e-20 Score=185.40 Aligned_cols=250 Identities=18% Similarity=0.197 Sum_probs=180.6
Q ss_pred CCcceeEEEEEecCCCccc-ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 148 LDEKVCHLMLVIGLGASFP-VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
+...++.+.+.++....++ ..+.++++|++|++++|.+.. ..|..|.++++|++|++++| .+..+|.
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n------~l~~l~~ 119 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK------IHEKAFSPLRKLQKLYISKN------HLVEIPP 119 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECGGGSTTCTTCCEEECCSS------CCCSCCS
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc------cCHhHhhCcCCCCEEECCCC------cCCccCc
Confidence 3568899999988877664 478999999999999998643 24556899999999999993 5667777
Q ss_pred cccccCCCCEEecCCCCCccccch-hhhccCCccEEecCCCcCc--cccccccccCCCCceeecCCccCCCcCCccCCCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINL--KALPQGIGKLINMKHLLNERTDSLGHMPAGIARL 303 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l 303 (582)
.+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+ +|++|++++|. +..+|..+.
T Consensus 120 ~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~-- 192 (332)
T 2ft3_A 120 NLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP-- 192 (332)
T ss_dssp SCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--
T ss_pred ccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--
Confidence 665 899999999999 666664 5899999999999999842 2456677777 99999999995 455776553
Q ss_pred CCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCcc
Q 007979 304 PSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKN 383 (582)
Q Consensus 304 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 383 (582)
++|++|++..+.... +
T Consensus 193 ~~L~~L~l~~n~i~~-----------------------------~----------------------------------- 208 (332)
T 2ft3_A 193 ETLNELHLDHNKIQA-----------------------------I----------------------------------- 208 (332)
T ss_dssp SSCSCCBCCSSCCCC-----------------------------C-----------------------------------
T ss_pred CCCCEEECCCCcCCc-----------------------------c-----------------------------------
Confidence 577777654332111 0
Q ss_pred chHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 384 EHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 384 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
.+..+..+++|++|++++|.+....+.++..+++|+.|++++|......+.+..+++|++|++++|. ++.++..
T Consensus 209 -----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~ 282 (332)
T 2ft3_A 209 -----ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVN 282 (332)
T ss_dssp -----CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTT
T ss_pred -----CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChh
Confidence 0112345667888888888887775667888899999999988666333347888889999998887 6666654
Q ss_pred ccCCCCCCCCCCCCCcccccCcccccccccccc
Q 007979 464 ILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
.+.... ....+++|+.|.+.++|
T Consensus 283 ~~~~~~----------~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 283 DFCPVG----------FGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSSCSS----------CCSSSCCBSEEECCSSS
T ss_pred Hccccc----------cccccccccceEeecCc
Confidence 432110 01124566666666664
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3e-20 Score=189.15 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=86.8
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
+..++.+.+..+....+|.. +++|+.|++++|.+... +. ..++|++|++++| .+..+| .+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-------~~---~~~~L~~L~L~~n------~l~~lp-~~ 149 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-------SD---LPPLLEYLGVSNN------QLEKLP-EL 149 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-------CS---CCTTCCEEECCSS------CCSSCC-CC
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-------cC---CCCCCCEEECcCC------CCCCCc-cc
Confidence 56677777777766665542 36777888877765431 10 1157778888773 444566 47
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
+.+++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|++++|.. ..+|... ++|++
T Consensus 150 ~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~---~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSL-KKLPDLP---LSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SSCCCCC---TTCCE
T ss_pred CCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcC-CcCCCCc---CcccE
Confidence 777778888887777 55566433 477777777776 55566 477777777777777743 3344322 46666
Q ss_pred cCeeee
Q 007979 309 LDEFHV 314 (582)
Q Consensus 309 L~~~~~ 314 (582)
|++..+
T Consensus 220 L~l~~n 225 (454)
T 1jl5_A 220 IVAGNN 225 (454)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 665544
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.2e-20 Score=202.56 Aligned_cols=139 Identities=24% Similarity=0.207 Sum_probs=111.7
Q ss_pred CCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecC
Q 007979 162 GASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLS 240 (582)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~ 240 (582)
...+|..+. +.++.|++++|.+.. +.+..|.++++|++|+|++| .+..+| .+|++|++|++|+|+
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~------l~~~~f~~l~~L~~L~Ls~N------~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTC------CCCEECTTTTTTCTTCCEEECT
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCC------CCHHHHhCCCCCCEEECCCC------cCCCcChhHhcCCCCCCEEEcc
Confidence 345565442 479999999998643 34556999999999999994 555665 568999999999999
Q ss_pred CCCCccccch-hhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCC-cCCccCCCCCCCCccCeeeecC
Q 007979 241 SVTLIRKLPE-TLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLG-HMPAGIARLPSLRTLDEFHVSG 316 (582)
Q Consensus 241 ~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~ 316 (582)
+|. +..+|. .|.++++|++|++++|. +..+|. .++++++|++|++++|.... ..|..++.+++|++|++..+..
T Consensus 109 ~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 109 GNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 999 777764 58999999999999998 666665 58999999999999996543 4677788999999998776543
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.8e-21 Score=187.18 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhh
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 252 (582)
++++.|++++|.+.. +++..|.++++|++|++++|.+.. +...|..+..+++|++|++++|. +..+|..+
T Consensus 28 ~~l~~L~L~~n~l~~------i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 28 SSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp TTCCEEECCSSCCCC------CCTTTTTTCTTCSEEECCSSCCCE---EEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred CCCCEEECCCCccCc------cCHhHhhccccCCEEECCCCccCc---ccCcccccccccccCEEECCCCc-cccChhhc
Confidence 467777777766432 123335667777777777644321 11224455566777777777776 55666666
Q ss_pred hccCCccEEecCCCcCccccc--cccccCCCCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 253 CELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
..+++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 98 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp ETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred CCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 677777777777765 44444 25666777777777766554444555555666666654
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=1.2e-20 Score=193.07 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=100.3
Q ss_pred EEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccC
Q 007979 154 HLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLV 232 (582)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~ 232 (582)
.+...+.....+|..+. ++++.|++++|.+.. +.+..|.++++|++|+|++|.+ ..+ |..+.+++
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~l~ 123 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQM------IQADTFRHLHHLEVLQLGRNSI------RQIEVGAFNGLA 123 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCE------ECTTTTTTCTTCCEEECCSSCC------CEECTTTTTTCT
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCce------ECHHHcCCCCCCCEEECCCCcc------CCcChhhccCcc
Confidence 33333344445565443 578888888887543 2345578888888888888443 333 36778888
Q ss_pred CCCEEecCCCCCccccch-hhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCcc-CCCCCCCCcc
Q 007979 233 HLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPAG-IARLPSLRTL 309 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 309 (582)
+|++|+|++|. +..+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++|..+..++.. +..+++|+.|
T Consensus 124 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 124 SLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 88888888888 555554 47888888888888887 555554 5778888888888887777766653 6677777777
Q ss_pred Ceee
Q 007979 310 DEFH 313 (582)
Q Consensus 310 ~~~~ 313 (582)
++..
T Consensus 202 ~L~~ 205 (452)
T 3zyi_A 202 NLGM 205 (452)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 6543
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.6e-20 Score=191.18 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=9.9
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcC
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNML 185 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 185 (582)
...++.+.+.++..+.+|..+.++++|+.|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~ 46 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW 46 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc
Confidence 3456666677777777787888888888888877753
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=190.77 Aligned_cols=145 Identities=18% Similarity=0.219 Sum_probs=100.2
Q ss_pred EEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccC
Q 007979 154 HLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLV 232 (582)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~ 232 (582)
.+.........+|..+. ++++.|++++|.+... .+..|.++++|++|+|++|. +..++ ..+.+++
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQII------KVNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLA 112 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEE------CTTTTSSCSSCCEEECCSSC------CCEECGGGGTTCS
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCee------CHHHhhCCCCCCEEECCCCc------CCccChhhccCCc
Confidence 33333444555565543 6788888888875432 33447888888888888843 33443 5678888
Q ss_pred CCCEEecCCCCCccccch-hhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCc-cCCCCCCCCcc
Q 007979 233 HLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPA-GIARLPSLRTL 309 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 309 (582)
+|++|+|++|. +..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|..+..++. .+..+++|+.|
T Consensus 113 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 113 NLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp SCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 88888888887 556654 57888888888888887 55554 4577888888888888766666665 36677777777
Q ss_pred Ceeee
Q 007979 310 DEFHV 314 (582)
Q Consensus 310 ~~~~~ 314 (582)
++..+
T Consensus 191 ~L~~n 195 (440)
T 3zyj_A 191 NLAMC 195 (440)
T ss_dssp ECTTS
T ss_pred cCCCC
Confidence 75443
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=6e-21 Score=188.79 Aligned_cols=103 Identities=23% Similarity=0.277 Sum_probs=56.7
Q ss_pred CceeEEEeCCCccccccccccccc-cccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccc-cccCC
Q 007979 203 TSLRALDIGNWSATLCSSILDIPR-NIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQG-IGKLI 280 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~ 280 (582)
++|++|++++| .+..+|. .++++++|++|++++|.+.+..|..++++++|++|++++|. +..+|.. ++.++
T Consensus 52 ~~L~~L~l~~n------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNN------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTS------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCT
T ss_pred ccCcEEECCCC------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCc
Confidence 35666666662 3333433 45666666666666666333334456666666666666665 4445543 56666
Q ss_pred CCceeecCCccCCCcCCc--cCCCCCCCCccCeee
Q 007979 281 NMKHLLNERTDSLGHMPA--GIARLPSLRTLDEFH 313 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~ 313 (582)
+|++|++++|.. ..+|. .+..+++|++|++..
T Consensus 125 ~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 125 SLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp TCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEE
T ss_pred cCCEEECCCCCC-cccCchhhhccCCCCcEEECCC
Confidence 666666666633 33443 345555555555544
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=9.2e-23 Score=209.95 Aligned_cols=375 Identities=17% Similarity=0.080 Sum_probs=229.6
Q ss_pred CcceeEEEEEecCCCccc--ccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFP--VSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
++.++++.+.++.....+ ..+..+++|++|++++|.+... ....++..+..+++|++|++++|.+.. ..+..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCCCcCEEeCCCCcCCh-HHHHHHHH
Confidence 456778888777665332 2267788999999999986532 122356778889999999999965543 12222222
Q ss_pred cccccC-CCCEEecCCCCCcc----ccchhhhccCCccEEecCCCcCccccccccc-----cCCCCceeecCCccCCCc-
Q 007979 227 NIEKLV-HLRYLNLSSVTLIR----KLPETLCELYNLEKLDISYCINLKALPQGIG-----KLINMKHLLNERTDSLGH- 295 (582)
Q Consensus 227 ~i~~L~-~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~l~~L~~L~l~~~~~~~~- 295 (582)
.+.... +|++|++++|.+.. .+|..+.++++|++|++++|......+..+. ..++|++|++++|.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 222111 69999999998432 5688899999999999999884322222222 356799999999865442
Q ss_pred ---CCccCCCCCCCCccCeeeecCCCCcCCCCccccc-ccc-CCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEE
Q 007979 296 ---MPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLE-SLK-NMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRL 370 (582)
Q Consensus 296 ---~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~-~l~-~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 370 (582)
++..+..+++|++|++.++..... ....+. .+. ....|+.+.+....--..........+..++.|+.|++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEA----GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHH----HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchH----HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 344566678999998765542210 001111 111 13355555555443222211122334557788999998
Q ss_pred EeeecCCCCCCccchHHHHHh-hCCCCCCCcEEEEeeEeCCCc----CCchhhcCcCCcEEEEeCCCCCCcCC----C--
Q 007979 371 WFDVKESGGRRKNEHDQLLLE-ALQPPLNLKELFIGSYGGNTV----SPSWMMSLTNLRSLNLHLCENCEQLP----P-- 439 (582)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~l~----~-- 439 (582)
+.+... ......+.. ....+++|++|++++|.+... ++..+..+++|++|++++|...+..+ .
T Consensus 235 s~n~l~------~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 235 GSNKLG------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CSSBCH------HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cCCcCC------hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 765421 011112222 334678999999999987762 26677789999999999986543211 1
Q ss_pred CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccc
Q 007979 440 LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRL 519 (582)
Q Consensus 440 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L 519 (582)
....++|++|++++|. ++..+...+. ..+..+++|++|+++++ .+...........+ -...++|
T Consensus 309 ~~~~~~L~~L~L~~n~-l~~~~~~~l~------------~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l--~~~~~~L 372 (461)
T 1z7x_W 309 LEPGCQLESLWVKSCS-FTAACCSHFS------------SVLAQNRFLLELQISNN-RLEDAGVRELCQGL--GQPGSVL 372 (461)
T ss_dssp TSTTCCCCEEECTTSC-CBGGGHHHHH------------HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH--TSTTCCC
T ss_pred ccCCccceeeEcCCCC-CchHHHHHHH------------HHHhhCCCccEEEccCC-ccccccHHHHHHHH--cCCCCce
Confidence 2234699999999987 4332111110 01235689999999888 45443221110000 0025789
Q ss_pred cceecccccccc-----cCCcCCCCCCCcceEEEeCCcc
Q 007979 520 SALAIAVCPKLK-----ALPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 520 ~~L~l~~C~~L~-----~lp~~~~~l~~L~~L~i~~C~~ 553 (582)
+.|++++|. ++ .+|..+..+++|++|++++|+-
T Consensus 373 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 373 RVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred EEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 999999974 55 5676677788999999999864
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.1e-19 Score=188.48 Aligned_cols=255 Identities=20% Similarity=0.186 Sum_probs=149.3
Q ss_pred eeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccccc
Q 007979 152 VCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKL 231 (582)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L 231 (582)
.+.+.+.++....+|..+. ++|+.|++++|.+.. +|. .+++|++|+|++| .+..+|. .+
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-------lp~---~l~~L~~L~Ls~N------~l~~lp~---~l 100 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-------LPA---LPPELRTLEVSGN------QLTSLPV---LP 100 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-------CCC---CCTTCCEEEECSC------CCSCCCC---CC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-------CCC---cCCCCCEEEcCCC------cCCcCCC---CC
Confidence 4455555555555565543 677777777776542 221 4567777777773 4445655 56
Q ss_pred CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 232 VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
++|++|++++|. +..+|. .+++|++|++++|. +..+|.. +++|++|++++|. +..+|.. +++|+.|++
T Consensus 101 ~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L 168 (622)
T 3g06_A 101 PGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWA 168 (622)
T ss_dssp TTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEEC
T ss_pred CCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEEC
Confidence 777777777777 666665 56777777777776 5666653 3677777777773 3344432 234444443
Q ss_pred eeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh
Q 007979 312 FHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE 391 (582)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 391 (582)
..+.... ++
T Consensus 169 ~~N~l~~-----------------------------l~------------------------------------------ 177 (622)
T 3g06_A 169 YNNQLTS-----------------------------LP------------------------------------------ 177 (622)
T ss_dssp CSSCCSC-----------------------------CC------------------------------------------
T ss_pred CCCCCCC-----------------------------Cc------------------------------------------
Confidence 2211110 00
Q ss_pred hCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCC
Q 007979 392 ALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDH 471 (582)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 471 (582)
..+++|+.|++++|.+..+ |. .+++|+.|++++|... .+|. .+++|+.|++++|. ++.+|.
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~--~~~~L~~L~Ls~N~-L~~lp~--------- 238 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA--LPSGLKELIVSGNR-LTSLPV--------- 238 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCSSC-CSCCCC---------
T ss_pred --ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC--CCCCCCEEEccCCc-cCcCCC---------
Confidence 1234566666666666554 43 2356677777666433 3332 24667777776664 444441
Q ss_pred CCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCC
Q 007979 472 HDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 472 ~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C 551 (582)
.+++|++|+++++ +++.++. .+++|+.|++++| .++.+|..+.++++|+.|++++|
T Consensus 239 -----------~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 239 -----------LPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp -----------CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSC
T ss_pred -----------CCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCC
Confidence 4566777777766 5555443 4466777777764 46667766666777777777776
Q ss_pred cc
Q 007979 552 DL 553 (582)
Q Consensus 552 ~~ 553 (582)
+-
T Consensus 295 ~l 296 (622)
T 3g06_A 295 PL 296 (622)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=183.14 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=108.6
Q ss_pred ecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEE
Q 007979 159 IGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYL 237 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L 237 (582)
++....+|..+. ++|++|++++|.+.. +.+..|.++++|++|++++| .+..+ |..++++++|++|
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~L~~n------~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITY------ISNSDLQRCVNLQALVLTSN------GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCEE
T ss_pred CCCccccccccc--ccCcEEECCCCcCcc------cCHHHhccCCCCCEEECCCC------ccCccCHhhcCCCCCCCEE
Confidence 344556666553 589999999998643 23445889999999999994 44444 5678999999999
Q ss_pred ecCCCCCccccchh-hhccCCccEEecCCCcCcccccc--ccccCCCCceeecCCccCCCcC-CccCCCCCCCCccCeee
Q 007979 238 NLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQ--GIGKLINMKHLLNERTDSLGHM-PAGIARLPSLRTLDEFH 313 (582)
Q Consensus 238 ~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~ 313 (582)
++++|. +..+|.. ++++++|++|++++|. +..+|. .++.+++|++|++++|.....+ |..++.+++|++|++..
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999 6677765 8999999999999997 677876 6889999999999998645544 44567777777777655
Q ss_pred e
Q 007979 314 V 314 (582)
Q Consensus 314 ~ 314 (582)
+
T Consensus 184 n 184 (353)
T 2z80_A 184 S 184 (353)
T ss_dssp T
T ss_pred C
Confidence 4
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.4e-19 Score=182.33 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=56.1
Q ss_pred CceeEEEeCCCccccccccccc-cccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc-ccccCC
Q 007979 203 TSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ-GIGKLI 280 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~ 280 (582)
++|++|+|++|. +..+ |..++++++|++|++++|.+.+..|..+.++++|++|+|++|. +..+|. .+..++
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCT
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccC
Confidence 456667776633 2223 4556666677777777666333333556666677777776665 444443 356666
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccC
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLD 310 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 310 (582)
+|++|++++|......+..+..+++|+.|+
T Consensus 148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 666666666643222222344445555444
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=181.06 Aligned_cols=102 Identities=26% Similarity=0.270 Sum_probs=61.8
Q ss_pred CceeEEEeCCCccccccccccc-cccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc-ccccCC
Q 007979 203 TSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ-GIGKLI 280 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~ 280 (582)
+++++|+|++|. +..+ +..++++++|++|+|++|.+....|..|.++++|++|+|++|. +..+|. .+..++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccc
Confidence 567777777733 3333 3566777777777777777333334567777777777777776 555554 466777
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
+|++|++++|......+..+..+++|++|++
T Consensus 137 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 7777777777433222234555555555543
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.5e-21 Score=186.40 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=86.7
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCC
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDS 474 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 474 (582)
.+++|++|++++|.+..+ |.. ..+++|+.|++++|......+.+..+++|++|++++|. ++.+|..+
T Consensus 167 ~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~---------- 233 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL---------- 233 (317)
T ss_dssp GTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC----------
T ss_pred ccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHh----------
Confidence 456788888888887766 433 34788888888888766655557778888888888886 66776542
Q ss_pred CCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcch
Q 007979 475 SSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDLL 554 (582)
Q Consensus 475 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~l 554 (582)
..+++|+.|++++++--...... .+..+++|+.|++.+|+.++..+..-...+.+....-..|..+
T Consensus 234 -------~~l~~L~~L~l~~N~~~~~~~~~-------~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 234 -------RFSQNLEHFDLRGNGFHCGTLRD-------FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp -------CCCTTCCEEECTTCCCBHHHHHH-------HHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCC
T ss_pred -------hcCCCCCEEEccCCCccCcCHHH-------HHhccccceEEECCCchhccCCchhccCCCceecccceeeccC
Confidence 26788888888887422111111 1336788888888887777765433222233333333446655
Q ss_pred HHH
Q 007979 555 EER 557 (582)
Q Consensus 555 ~~~ 557 (582)
...
T Consensus 300 ~~~ 302 (317)
T 3o53_A 300 PAP 302 (317)
T ss_dssp TTT
T ss_pred Chh
Confidence 433
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2e-19 Score=174.07 Aligned_cols=229 Identities=20% Similarity=0.166 Sum_probs=181.0
Q ss_pred CCCcceeEEEEEecCCCccccc-ccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASFPVS-TCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
..+..++++.+.++....++.. +.++++|+.|++++|.+... +. .+..+..+++|++|++++| .+..+|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~~~~~~L~~L~Ls~n------~i~~l~ 94 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---GC-CSQSDFGTTSLKYLDLSFN------GVITMS 94 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---EE-EEHHHHSCSCCCEEECCSC------SEEEEE
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---cC-cccccccccccCEEECCCC------ccccCh
Confidence 3467899999999888877765 68999999999999986532 11 1233667999999999993 566788
Q ss_pred ccccccCCCCEEecCCCCCccccc--hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCC-cCCccCCC
Q 007979 226 RNIEKLVHLRYLNLSSVTLIRKLP--ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLG-HMPAGIAR 302 (582)
Q Consensus 226 ~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~ 302 (582)
..+..+++|++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++|.... ..|..+..
T Consensus 95 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 173 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173 (306)
T ss_dssp EEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh
Confidence 889999999999999999 66666 478999999999999998655667778999999999999996654 46777888
Q ss_pred CCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCc
Q 007979 303 LPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRK 382 (582)
Q Consensus 303 l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 382 (582)
+++|+.|++.++....
T Consensus 174 l~~L~~L~Ls~n~l~~---------------------------------------------------------------- 189 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQ---------------------------------------------------------------- 189 (306)
T ss_dssp CTTCCEEECTTSCCCE----------------------------------------------------------------
T ss_pred CcCCCEEECCCCCcCC----------------------------------------------------------------
Confidence 8888888754332110
Q ss_pred cchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCC-Ccceeeccccc
Q 007979 383 NEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLP-SLEKLYISDMK 455 (582)
Q Consensus 383 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-~L~~L~L~~~~ 455 (582)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|......+. +..++ +|++|++++|+
T Consensus 190 -----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 -----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -----ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -----cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 0012344567899999999998887566788999999999999988776664 77775 99999999987
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1.1e-19 Score=173.90 Aligned_cols=61 Identities=21% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeeccccc
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMK 455 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 455 (582)
.+++|++|++++|.+....|.++..+++|+.|++++|......+. +..+++|+.|++++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 345566666666666555455566666666666666644433222 5556666666666655
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=8.3e-20 Score=174.82 Aligned_cols=202 Identities=22% Similarity=0.212 Sum_probs=125.2
Q ss_pred CceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccc-ccccccCC
Q 007979 203 TSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKAL-PQGIGKLI 280 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~ 280 (582)
++|++|++++| .+..+| ..++.+++|++|++++|.+.+..|..+.++++|++|++++|..+..+ |..+..++
T Consensus 32 ~~l~~L~l~~n------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLHGN------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCSEEECTTS------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCceEEEeeCC------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 45666666663 333333 34566666666666666633333556666666666666666534444 45566666
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccC
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLD 360 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~ 360 (582)
+|++|++++|......|..+..+++|++|++..+.... ++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~----------- 145 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----------------------------LP----------- 145 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------CC-----------
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----------------------------cC-----------
Confidence 66666666665444444555666666666543321110 00
Q ss_pred CCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-
Q 007979 361 KKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP- 439 (582)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~- 439 (582)
...+..+++|++|++++|.+..+.+.++..+++|+.|++++|......|.
T Consensus 146 -----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 146 -----------------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp -----------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred -----------------------------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 01233456777777877777776455678888899999988877666444
Q ss_pred CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccc
Q 007979 440 LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 440 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
++.+++|+.|++++|. ++.++...+ ..+++|++|++++++
T Consensus 197 ~~~l~~L~~L~l~~n~-l~~~~~~~~----------------~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANN-LSALPTEAL----------------APLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSC-CSCCCHHHH----------------TTCTTCCEEECCSSC
T ss_pred ccCcccccEeeCCCCc-CCcCCHHHc----------------ccCcccCEEeccCCC
Confidence 7888889999998886 655554432 367888888888874
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.3e-19 Score=184.50 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=164.5
Q ss_pred HHHHHccCC----ceeEEEeCCCccccccccccc-cccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCc
Q 007979 195 LKELFGKLT----SLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINL 269 (582)
Q Consensus 195 ~~~~~~~l~----~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l 269 (582)
+|..+..+. +|++|+|++|. +..+ |..++.+++|++|+|++|. +..+++ ++.+++|++|++++|. +
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l 92 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-V 92 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-E
T ss_pred hHHHHHHhcccCCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-C
Confidence 444444443 88999998843 3344 4678888899999999888 444443 8888899999999886 5
Q ss_pred cccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCC
Q 007979 270 KALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVS 349 (582)
Q Consensus 270 ~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~ 349 (582)
..+|. .++|++|++++|......+. .+++|+.|++..+....
T Consensus 93 ~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------------------------------- 134 (487)
T 3oja_A 93 QELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------------------- 134 (487)
T ss_dssp EEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-------------------------------
T ss_pred CCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-------------------------------
Confidence 55553 37888888888854332222 24555555543322111
Q ss_pred ChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhh-cCcCCcEEEE
Q 007979 350 DVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMM-SLTNLRSLNL 428 (582)
Q Consensus 350 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l 428 (582)
..+..+..+++|+.|++++|.+....|..+. .+++|+.|+|
T Consensus 135 --------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 135 --------------------------------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp --------------------------------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred --------------------------------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 0011233456788888888888776577765 7899999999
Q ss_pred eCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccC
Q 007979 429 HLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRT 508 (582)
Q Consensus 429 ~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~ 508 (582)
++|..... +....+++|+.|+|++|. ++.+|..+ ..+++|+.|+++++ .+..++..
T Consensus 177 s~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-----------------~~l~~L~~L~Ls~N-~l~~lp~~---- 232 (487)
T 3oja_A 177 QYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPEF-----------------QSAAGVTWISLRNN-KLVLIEKA---- 232 (487)
T ss_dssp TTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGGG-----------------GGGTTCSEEECTTS-CCCEECTT----
T ss_pred CCCccccc-cccccCCCCCEEECCCCC-CCCCCHhH-----------------cCCCCccEEEecCC-cCcccchh----
Confidence 99975544 556678999999999887 77776652 26788999999887 56655532
Q ss_pred CCCCCcccccccceeccccccc-ccCCcCCCCCCCcceEEEe
Q 007979 509 GHPFIDIMPRLSALAIAVCPKL-KALPDHIHQTTTLKGLSIW 549 (582)
Q Consensus 509 ~~~~~~~~~~L~~L~l~~C~~L-~~lp~~~~~l~~L~~L~i~ 549 (582)
+..+++|+.|++.+|+-. ..+|..+..++.|+.+.+.
T Consensus 233 ----l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 ----LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ----CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ----hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 347788999999886644 2556666667777777665
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=2e-20 Score=198.84 Aligned_cols=365 Identities=12% Similarity=0.033 Sum_probs=165.1
Q ss_pred cceeEEEEEecCCCc-ccccccC-CCC-ceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 150 EKVCHLMLVIGLGAS-FPVSTCR-IKR-MRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~-~~~~~~~-~~~-L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
..++.+.+..+.... .+..+.. ++. |++|++++|.. +....++....++++|++|+|++|.+.+ .....++.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~ 186 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSE-KDGKWLHE 186 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEEC-CCSHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccC-cchhHHHH
Confidence 445666666554331 1122222 233 77777766641 1122234444566777777777644332 11111333
Q ss_pred cccccCCCCEEecCCCCCc----cccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCC---CcCCcc
Q 007979 227 NIEKLVHLRYLNLSSVTLI----RKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSL---GHMPAG 299 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~~p~~ 299 (582)
....+++|++|++++|.+. ..++..+.++++|++|++++|. +..+|..+..+++|++|++..+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 3455666677777666632 2444455566677777776665 4456665666666666666543221 112223
Q ss_pred CCCCCCCCccCeeeecCCCCcCCCCccccccc----------------------cCCCccCeeeeeecCCCCChhHHHhc
Q 007979 300 IARLPSLRTLDEFHVSGGEGVDGRKGCRLESL----------------------KNMELLQVCGIRRLGNVSDVDEAKRL 357 (582)
Q Consensus 300 i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l----------------------~~L~~L~~l~~~~~~~~~~~~~~~~~ 357 (582)
+..+++|+.|.+..+... ..+..+..+ ..+.+|+.+.+.. .+. ......
T Consensus 266 l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~--~~~l~~ 336 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIG--DRGLEV 336 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-----TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGH--HHHHHH
T ss_pred hhccccccccCccccchh-----HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccC--HHHHHH
Confidence 344444444433221100 011111222 2222233222220 000 000111
Q ss_pred ccCCCCCcceEEEEe-eecCCCCC-CccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhh-cCcCCcEEEEeCC---
Q 007979 358 KLDKKKYLSCLRLWF-DVKESGGR-RKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMM-SLTNLRSLNLHLC--- 431 (582)
Q Consensus 358 ~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~--- 431 (582)
....+++|+.|++.. ........ ........+......+++|++|++..+.+....+..+. .+++|+.|++++|
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 112344555555552 00000000 00001112222233355666666655544433233333 2666666666532
Q ss_pred CCCCcCCC-------CCCCCCcceeecccccC-ceEeCccccCCCCCCCCCCCCCcccccCccccccccccccccccccc
Q 007979 432 ENCEQLPP-------LGKLPSLEKLYISDMKS-VKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDY 503 (582)
Q Consensus 432 ~~~~~l~~-------l~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 503 (582)
......|. +..+++|++|+++.|.+ +........ ...+++|++|.+++|. +.....
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~---------------~~~~~~L~~L~L~~n~-l~~~~~ 480 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI---------------GQYSPNVRWMLLGYVG-ESDEGL 480 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH---------------HHSCTTCCEEEECSCC-SSHHHH
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH---------------HHhCccceEeeccCCC-CCHHHH
Confidence 22222211 33466666666655442 111100000 1246777777777663 332111
Q ss_pred CcccCCCCCCcccccccceeccccccccc--CCcCCCCCCCcceEEEeCCc
Q 007979 504 GITRTGHPFIDIMPRLSALAIAVCPKLKA--LPDHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 504 ~~~~~~~~~~~~~~~L~~L~l~~C~~L~~--lp~~~~~l~~L~~L~i~~C~ 552 (582)
.. .+..+++|+.|++++|+ ++. ++..+..+++|++|++++|+
T Consensus 481 ~~------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 481 ME------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HH------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HH------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 00 02367888888888887 432 34444457888888888887
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.8e-20 Score=181.80 Aligned_cols=246 Identities=19% Similarity=0.166 Sum_probs=160.9
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc-------ccCCCCEEecCCC
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE-------KLVHLRYLNLSSV 242 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~-------~L~~L~~L~L~~~ 242 (582)
+..++|+.|++++|.+ . +|..+... |++|++++|.+... .+|..+. ++++|++|++++|
T Consensus 40 ~~~~~L~~l~l~~n~l-~-------~p~~~~~~--L~~L~L~~n~l~~~----~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A-------DLGQFTDI--IKSLSLKRLTVRAA----RIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEECTTHHHHCCTT-C-------CCHHHHHH--HHHCCCCEEEEEEE----ECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred ccCCCceeEeeccccc-c-------cHHHHHHH--HhhcccccccccCC----CcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 4456677777888775 1 12222222 78888888554321 3555554 6889999999999
Q ss_pred CCccccchhh--hccCCccEEecCCCcCccccccccccC-----CCCceeecCCccCCCcCCccCCCCCCCCccCeeeec
Q 007979 243 TLIRKLPETL--CELYNLEKLDISYCINLKALPQGIGKL-----INMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVS 315 (582)
Q Consensus 243 ~~~~~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 315 (582)
.+.+.+|..+ +.+++|++|++++|. +...|..++.+ ++|++|++++|......|..++.+++|++|++.++.
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 8666788776 889999999999987 55558777776 889999998887655555677778888877754332
Q ss_pred CCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhC--
Q 007979 316 GGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEAL-- 393 (582)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-- 393 (582)
... ....+..+
T Consensus 185 l~~-------------------------------------------------------------------~~~~~~~~~~ 197 (312)
T 1wwl_A 185 ELG-------------------------------------------------------------------ERGLISALCP 197 (312)
T ss_dssp TCH-------------------------------------------------------------------HHHHHHHSCT
T ss_pred cCc-------------------------------------------------------------------chHHHHHHHh
Confidence 110 01111222
Q ss_pred CCCCCCcEEEEeeEeCCCcC--C-chhhcCcCCcEEEEeCCCCCCcC--CCCCCCCCcceeecccccCceEeCccccCCC
Q 007979 394 QPPLNLKELFIGSYGGNTVS--P-SWMMSLTNLRSLNLHLCENCEQL--PPLGKLPSLEKLYISDMKSVKRVGNEILGIE 468 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~--p-~~~~~l~~L~~L~l~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 468 (582)
..+++|++|++++|.+.... + ..+..+++|+.|++++|...... +.+..+++|++|++++|. ++.+|..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~----- 271 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG----- 271 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-----
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-----
Confidence 55678888888888777430 2 23347788899999888776654 336667888888888876 5555442
Q ss_pred CCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccc
Q 007979 469 SDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVC 527 (582)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C 527 (582)
.+++|++|+++++ +++.++. +..+++|+.|+++++
T Consensus 272 --------------~~~~L~~L~Ls~N-~l~~~p~---------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 272 --------------LPAKLSVLDLSYN-RLDRNPS---------PDELPQVGNLSLKGN 306 (312)
T ss_dssp --------------CCSEEEEEECCSS-CCCSCCC---------TTTSCEEEEEECTTC
T ss_pred --------------ccCCceEEECCCC-CCCCChh---------HhhCCCCCEEeccCC
Confidence 1257777777766 4544422 235666666666663
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.6e-19 Score=175.51 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=165.9
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp 249 (582)
..+++|+.|++++|.+... .|..|..+++|++|++++|.+. .++. ++.+++|++|++++|. +..+|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~------~~~~-~~~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLY------ETLD-LESLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp TTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCE------EEEE-ETTCTTCCEEECCSSE-EEEEE
T ss_pred ccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCC------cchh-hhhcCCCCEEECcCCc-ccccc
Confidence 4566788888888875432 4556788888888888884433 3333 7778888888888887 66555
Q ss_pred hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccc
Q 007979 250 ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLE 329 (582)
Q Consensus 250 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~ 329 (582)
..++|++|++++|. +..++. ..+++|++|++++|......|..++.+++|++|++..+..... ...
T Consensus 97 ----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~ 162 (317)
T 3o53_A 97 ----VGPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFA 162 (317)
T ss_dssp ----ECTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGG
T ss_pred ----CCCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-------cHH
Confidence 34788888888877 444443 2367788888888865554455667777777777654332210 001
Q ss_pred cccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeC
Q 007979 330 SLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGG 409 (582)
Q Consensus 330 ~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 409 (582)
.+ ...++.|+.|+++.+.... + .....+++|++|++++|.+
T Consensus 163 ~~---------------------------~~~l~~L~~L~L~~N~l~~-----------~-~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 163 EL---------------------------AASSDTLEHLNLQYNFIYD-----------V-KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp GG---------------------------GGGTTTCCEEECTTSCCCE-----------E-ECCCCCTTCCEEECCSSCC
T ss_pred HH---------------------------hhccCcCCEEECCCCcCcc-----------c-ccccccccCCEEECCCCcC
Confidence 11 0122334444443332110 0 1223478999999999999
Q ss_pred CCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCc-eEeCccccCCCCCCCCCCCCCcccccCcccc
Q 007979 410 NTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSV-KRVGNEILGIESDHHDSSSSSSVIIAFPKLQ 488 (582)
Q Consensus 410 ~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 488 (582)
..+ |..+..+++|+.|++++|......+.+..+++|+.|++++|+.. ..++. + ...+++|+
T Consensus 204 ~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~----------------~~~~~~L~ 265 (317)
T 3o53_A 204 AFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-F----------------FSKNQRVQ 265 (317)
T ss_dssp CEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH-H----------------HHTCHHHH
T ss_pred Ccc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH-H----------------Hhccccce
Confidence 988 77799999999999999977754445889999999999999843 12222 2 34789999
Q ss_pred ccccccccccccccc
Q 007979 489 SLFIEDLPELEEWDY 503 (582)
Q Consensus 489 ~L~l~~~~~L~~l~~ 503 (582)
.|.+.+++.++....
T Consensus 266 ~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 266 TVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHSSSS
T ss_pred EEECCCchhccCCch
Confidence 999998887776543
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.5e-21 Score=200.96 Aligned_cols=363 Identities=17% Similarity=0.087 Sum_probs=230.6
Q ss_pred CcceeEEEEEecCCC-----cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCC----ceeEEEeCCCcccccc
Q 007979 149 DEKVCHLMLVIGLGA-----SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLT----SLRALDIGNWSATLCS 219 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~~~~~~ 219 (582)
.+.++.+.+..+... .++..+..+++|++|++++|.+.. ..+..++..++ +|++|++++|.+.. .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-~ 100 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-----VGVHCVLQGLQTPSCKIQKLSLQNCCLTG-A 100 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-----HHHHHHHHTTCSTTCCCCEEECTTSCCBG-G
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh-----HHHHHHHHHHhhCCCceeEEEccCCCCCH-H
Confidence 346778888888765 346667888999999999997532 22344445566 79999999976654 2
Q ss_pred ccccccccccccCCCCEEecCCCCCccccchhhh-----ccCCccEEecCCCcCcc----ccccccccCCCCceeecCCc
Q 007979 220 SILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLC-----ELYNLEKLDISYCINLK----ALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 220 ~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~-----~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~ 290 (582)
....+|..+..+++|++|++++|.+...-+..+. ..++|++|++++|.... .++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4456788899999999999999994333333333 25689999999997433 24666778899999999998
Q ss_pred cCCCcCCccCC-----CCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChh--HHHhcccCCCC
Q 007979 291 DSLGHMPAGIA-----RLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVD--EAKRLKLDKKK 363 (582)
Q Consensus 291 ~~~~~~p~~i~-----~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~--~~~~~~l~~~~ 363 (582)
......+..+. ..++|++|++..+....... ......+..+..|+.+++.... +.+.. .........++
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~ 256 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---RDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSS 256 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---HHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTC
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH---HHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCC
Confidence 64332222222 35689999876654332100 0011223345555555554432 11111 11122233578
Q ss_pred CcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhh-----cCcCCcEEEEeCCCCCCc--
Q 007979 364 YLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMM-----SLTNLRSLNLHLCENCEQ-- 436 (582)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-----~l~~L~~L~l~~~~~~~~-- 436 (582)
.|+.|+++.+... ......++..+..+++|++|++++|.+....+..+. ..++|+.|++++|.....
T Consensus 257 ~L~~L~L~~n~l~------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 257 RLRTLWIWECGIT------AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp CCCEEECTTSCCC------HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred CceEEECcCCCCC------HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 9999999866432 112233566677789999999999987543233333 236999999999976543
Q ss_pred --CCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccc-----cccCcccC
Q 007979 437 --LPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEE-----WDYGITRT 508 (582)
Q Consensus 437 --l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~-----l~~~~~~~ 508 (582)
++. +..+++|++|++++|. ++..+...+...- ....++|++|++++| .+.. ++.
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l-----------~~~~~~L~~L~L~~n-~i~~~~~~~l~~----- 392 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGL-----------GQPGSVLRVLWLADC-DVSDSSCSSLAA----- 392 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHH-----------TSTTCCCCEEECTTS-CCCHHHHHHHHH-----
T ss_pred HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHH-----------cCCCCceEEEECCCC-CCChhhHHHHHH-----
Confidence 222 5677999999999996 5443222111000 012679999999998 4552 221
Q ss_pred CCCCCcccccccceeccccccccc---------CCcCCCCCCCcceEEEeCCc
Q 007979 509 GHPFIDIMPRLSALAIAVCPKLKA---------LPDHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 509 ~~~~~~~~~~L~~L~l~~C~~L~~---------lp~~~~~l~~L~~L~i~~C~ 552 (582)
.+..+++|+.|++++|+ ++. +|.. ..+|+.|.+.++.
T Consensus 393 ---~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~---~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 393 ---TLLANHSLRELDLSNNC-LGDAGILQLVESVRQP---GCLLEQLVLYDIY 438 (461)
T ss_dssp ---HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTST---TCCCCEEECTTCC
T ss_pred ---HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccC---Ccchhheeecccc
Confidence 13368999999999975 432 2322 3467777776654
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.3e-19 Score=192.71 Aligned_cols=336 Identities=13% Similarity=0.098 Sum_probs=184.1
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHcc-CCc-eeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccc-
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGK-LTS-LRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRK- 247 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-l~~-Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~- 247 (582)
.+++|+.|++++|.+.. . .+..+.. ++. |++|+++++... ....++..+..+++|++|++++|.+.+.
T Consensus 110 ~~~~L~~L~L~~~~i~~-----~-~~~~l~~~~~~~L~~L~L~~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD-----L-DLDRLAKARADDLETLKLDKCSGF---TTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HCTTCCEEEEESCBCCH-----H-HHHHHHHHHGGGCCEEEEESCEEE---EHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hCCCCCeEEeeccEecH-----H-HHHHHHHhccccCcEEECcCCCCc---CHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 78999999999997532 2 2222333 444 999999983310 1122444456899999999999984333
Q ss_pred ---cchhhhccCCccEEecCCCcCc----cccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCc
Q 007979 248 ---LPETLCELYNLEKLDISYCINL----KALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGV 320 (582)
Q Consensus 248 ---lp~~i~~L~~L~~L~L~~~~~l----~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ 320 (582)
++..+..+++|++|++++|... ..++..+..+++|++|++.+|.. ..+|..+..+++|+.|.+........
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~- 258 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIG- 258 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTT-
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccc-
Confidence 5556778999999999998743 34566667899999999999854 45777788899999998764322110
Q ss_pred CCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCc
Q 007979 321 DGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLK 400 (582)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (582)
.......+..+.+|+.+++..... .. ....+..+++|+.|+++.+.. ........+..+++|+
T Consensus 259 ---~~~~~~~l~~~~~L~~L~l~~~~~-~~----l~~~~~~~~~L~~L~Ls~~~l---------~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 259 ---MPEKYMNLVFPRKLCRLGLSYMGP-NE----MPILFPFAAQIRKLDLLYALL---------ETEDHCTLIQKCPNLE 321 (592)
T ss_dssp ---CTTSSSCCCCCTTCCEEEETTCCT-TT----GGGGGGGGGGCCEEEETTCCC---------CHHHHHHHHTTCTTCC
T ss_pred ---hHHHHHHhhccccccccCccccch-hH----HHHHHhhcCCCcEEecCCCcC---------CHHHHHHHHHhCcCCC
Confidence 011222333344444443332110 00 111233445556665554331 1122222334445555
Q ss_pred EEEEeeEeCCCcCCchhhcCcCCcEEEEe------------------------------------CCCCCCcCC-CCC-C
Q 007979 401 ELFIGSYGGNTVSPSWMMSLTNLRSLNLH------------------------------------LCENCEQLP-PLG-K 442 (582)
Q Consensus 401 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~------------------------------------~~~~~~~l~-~l~-~ 442 (582)
+|+++++.....++.....+++|++|+++ .+......+ .++ .
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 55554221111112222344455555555 332222111 121 1
Q ss_pred CCCcceeeccc---ccCceEeCccccCCCCCCCCCCCCCcccccCccccccccccccc-ccccccCcccCCCCCCccccc
Q 007979 443 LPSLEKLYISD---MKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPE-LEEWDYGITRTGHPFIDIMPR 518 (582)
Q Consensus 443 l~~L~~L~L~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-L~~l~~~~~~~~~~~~~~~~~ 518 (582)
+++|+.|++++ |..++..|.+. +......++++|++|++++|.+ +..-..... ...+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~-----------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~------~~~~~~ 464 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDN-----------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPN 464 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHH-----------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH------HHSCTT
T ss_pred CCCCcEEEEeecCCCccccCchHHH-----------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH------HHhCcc
Confidence 44555555542 22222221110 0000123577888888876543 221111000 114789
Q ss_pred ccceeccccccccc--CCcCCCCCCCcceEEEeCCc
Q 007979 519 LSALAIAVCPKLKA--LPDHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 519 L~~L~l~~C~~L~~--lp~~~~~l~~L~~L~i~~C~ 552 (582)
|+.|++.+|. ++. ++..+..+++|++|++++|+
T Consensus 465 L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 465 VRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 9999999875 432 44455678999999999998
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=7.5e-18 Score=176.76 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCC
Q 007979 396 PLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSS 475 (582)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 475 (582)
+.+|+.|++++|.+..+ | ..+++|+.|++++|.... +|. .+++|+.|++++|. ++.+|.
T Consensus 160 ~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~-l~~l~~------------- 218 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT--LPSELYKLWAYNNR-LTSLPA------------- 218 (622)
T ss_dssp CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSSCCC-------------
T ss_pred cCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC--ccchhhEEECcCCc-ccccCC-------------
Confidence 46789999999998887 6 467899999999996554 444 35899999999987 655543
Q ss_pred CCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEeCCcchH
Q 007979 476 SSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDLLE 555 (582)
Q Consensus 476 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~l~ 555 (582)
.+++|++|+++++ +++.++. .+++|+.|++++| .++.+|. .+++|+.|++++|.- .
T Consensus 219 -------~~~~L~~L~Ls~N-~L~~lp~-----------~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~L-~ 274 (622)
T 3g06_A 219 -------LPSGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQL-T 274 (622)
T ss_dssp -------CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC-C
T ss_pred -------CCCCCCEEEccCC-ccCcCCC-----------CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCCC-C
Confidence 4589999999998 7776652 6799999999995 7889987 478999999999842 2
Q ss_pred HHhcCCCCCCCCccCCcCceeeCccc
Q 007979 556 ERYRKGEGEDWPKISHIPNIYINYLR 581 (582)
Q Consensus 556 ~~~~~~~~~~~~~i~~i~~~~~~~~~ 581 (582)
. .......+.++..+.+.++.
T Consensus 275 ~-----lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 275 R-----LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp S-----CCGGGGGSCTTCEEECCSCC
T ss_pred c-----CCHHHhhccccCEEEecCCC
Confidence 1 11223344555556666554
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.1e-19 Score=172.97 Aligned_cols=234 Identities=18% Similarity=0.168 Sum_probs=152.9
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhH--HHHHccCCceeEEEeCCCccccccccccccccc--cccCCCCEEecCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKML--KELFGKLTSLRALDIGNWSATLCSSILDIPRNI--EKLVHLRYLNLSS 241 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i--~~L~~L~~L~L~~ 241 (582)
|..+... |+.|++++|.+....+..... ...+.++++|++|++++|.+.+ .+|..+ +.+++|++|++++
T Consensus 58 p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~Ls~ 130 (312)
T 1wwl_A 58 LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG-----TAPPPLLEATGPDLNILNLRN 130 (312)
T ss_dssp CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS-----CCCCCSSSCCSCCCSEEEEES
T ss_pred HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc-----hhHHHHHHhcCCCccEEEccC
Confidence 4444333 888888888764322111110 0112378999999999954432 567766 8999999999999
Q ss_pred CCCccccchhhhcc-----CCccEEecCCCcCccccccccccCCCCceeecCCccCCCc--CCccC--CCCCCCCccCee
Q 007979 242 VTLIRKLPETLCEL-----YNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGH--MPAGI--ARLPSLRTLDEF 312 (582)
Q Consensus 242 ~~~~~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~ 312 (582)
|. +..+|..++.+ ++|++|++++|......|..++.+++|++|++++|...+. +|..+ +.+++|++|++.
T Consensus 131 N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~ 209 (312)
T 1wwl_A 131 VS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209 (312)
T ss_dssp CB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT
T ss_pred CC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC
Confidence 99 56568888888 9999999999984444447899999999999999965443 23344 677777777754
Q ss_pred eecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhh
Q 007979 313 HVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEA 392 (582)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 392 (582)
++.... .. ......
T Consensus 210 ~N~l~~--------------------------------~~----------------------------------~~~~~~ 223 (312)
T 1wwl_A 210 NAGMET--------------------------------PS----------------------------------GVCSAL 223 (312)
T ss_dssp TSCCCC--------------------------------HH----------------------------------HHHHHH
T ss_pred CCcCcc--------------------------------hH----------------------------------HHHHHH
Confidence 332110 00 001112
Q ss_pred CCCCCCCcEEEEeeEeCCCcCC-chhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCC
Q 007979 393 LQPPLNLKELFIGSYGGNTVSP-SWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESD 470 (582)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 470 (582)
+..+++|++|++++|.+....| ..+..+++|+.|++++|... .+|. +. ++|++|++++|. ++.+|.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~-l~~~p~-------- 291 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR-LDRNPS-------- 291 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC-CCSCCC--------
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC-CCCChh--------
Confidence 2345677777777777766533 34445678888888887655 4444 33 778888887776 555543
Q ss_pred CCCCCCCCcccccCccccccccccc
Q 007979 471 HHDSSSSSSVIIAFPKLQSLFIEDL 495 (582)
Q Consensus 471 ~~~~~~~~~~~~~~~~L~~L~l~~~ 495 (582)
...+++|++|+++++
T Consensus 292 ----------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 ----------PDELPQVGNLSLKGN 306 (312)
T ss_dssp ----------TTTSCEEEEEECTTC
T ss_pred ----------HhhCCCCCEEeccCC
Confidence 126777888887776
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=3.7e-19 Score=189.20 Aligned_cols=366 Identities=15% Similarity=0.077 Sum_probs=189.4
Q ss_pred CcceeEEEEEecCCCcc-ccccc-CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASF-PVSTC-RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
...++++.+..+..... +..+. .+++|++|++.+|. .+....++..+.++++|++|++++|.+.+ .....++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~ 178 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESDVDD-VSGHWLSH 178 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHH
Confidence 34677777776654321 22333 57899999998884 11223356656688999999999866543 23333444
Q ss_pred cccccCCCCEEecCCCC-Cc--cccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccC------CCcCC
Q 007979 227 NIEKLVHLRYLNLSSVT-LI--RKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDS------LGHMP 297 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~-~~--~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~p 297 (582)
....+++|++|++++|. .+ ..++..+..+++|++|++++|..+..+|..+..+++|++|++..+.. ...++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 45577889999998875 11 12333345678999999998866667777778888888888665421 01122
Q ss_pred ccCCCCCCCC------------------------ccCeeeecCCCCcCCCCcccccc-ccCCCccCeeeeeecCCCCChh
Q 007979 298 AGIARLPSLR------------------------TLDEFHVSGGEGVDGRKGCRLES-LKNMELLQVCGIRRLGNVSDVD 352 (582)
Q Consensus 298 ~~i~~l~~L~------------------------~L~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~ 352 (582)
..+..+++|+ +|++..+... ...+.. +..+.+|+.+.+..+ +. .
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~-------~~~l~~~~~~~~~L~~L~l~~~--~~--~ 327 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ-------SYDLVKLLCQCPKLQRLWVLDY--IE--D 327 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC-------HHHHHHHHTTCTTCCEEEEEGG--GH--H
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC-------HHHHHHHHhcCCCcCEEeCcCc--cC--H
Confidence 2333344444 4433322211 000110 122333333333322 10 0
Q ss_pred HHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhh-cCcCCcEEEEe--
Q 007979 353 EAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMM-SLTNLRSLNLH-- 429 (582)
Q Consensus 353 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~-- 429 (582)
.........+++|+.|++..+...............+......+++|++|.+.++.+....+..+. .+++|+.|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 000111123455666655432100000000001111111122346666665555554432222332 46677777777
Q ss_pred ---CCCCCCcCCC-------CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCccccccccccccccc
Q 007979 430 ---LCENCEQLPP-------LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELE 499 (582)
Q Consensus 430 ---~~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 499 (582)
+|......|. +..+++|+.|++++ .++..+.... ...+++|+.|.+++|. +.
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l---------------~~~~~~L~~L~L~~~~-i~ 469 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI---------------GTYAKKMEMLSVAFAG-DS 469 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH---------------HHHCTTCCEEEEESCC-SS
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH---------------HHhchhccEeeccCCC-Cc
Confidence 3333332221 34556777777754 2222111100 1136788888888773 32
Q ss_pred ccccCcccCCCCCCcccccccceeccccccccc-CCcCCCCCCCcceEEEeCCcch
Q 007979 500 EWDYGITRTGHPFIDIMPRLSALAIAVCPKLKA-LPDHIHQTTTLKGLSIWGCDLL 554 (582)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~-lp~~~~~l~~L~~L~i~~C~~l 554 (582)
....... ...+++|+.|++++|+.-.. ++..+..+++|+.|++++|+.-
T Consensus 470 ~~~~~~l------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 470 DLGMHHV------LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHH------HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHH------HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 2111000 13689999999999875211 2234455789999999999873
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=2.3e-17 Score=153.31 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=42.5
Q ss_pred ccccccccccccCCCCEEecCCCCCccccch-hhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCC
Q 007979 220 SILDIPRNIEKLVHLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNER 289 (582)
Q Consensus 220 ~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~ 289 (582)
.+..+|. +. .+|++|++++|. +..+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 4555665 32 367777777777 555554 577777777777777754555543 566777777777766
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=3e-18 Score=176.23 Aligned_cols=241 Identities=14% Similarity=0.045 Sum_probs=163.1
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
.+++|+.|++++|.+... +|..|..+++|++|+|++|.+. ..+. ++.+++|++|++++|. +..+|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~------~~~~-l~~l~~L~~L~Ls~N~-l~~l~~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLY------ETLD-LESLSTLRTLDLNNNY-VQELLV 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCE------EEEE-CTTCTTCCEEECCSSE-EEEEEE
T ss_pred cCCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCC------CCcc-cccCCCCCEEEecCCc-CCCCCC
Confidence 344899999999986542 4555888999999999985443 3333 8889999999999998 666663
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCcccccc
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLES 330 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~ 330 (582)
.++|++|++++|. +..+|. ..+++|++|++++|......|..++.+++|+.|++.++.... ..+..+.
T Consensus 98 ----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~- 165 (487)
T 3oja_A 98 ----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELA- 165 (487)
T ss_dssp ----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE----EEGGGGG-
T ss_pred ----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC----cChHHHh-
Confidence 3889999999987 555544 346889999999987766667778888888888865543321 1111111
Q ss_pred ccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCC
Q 007979 331 LKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGN 410 (582)
Q Consensus 331 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 410 (582)
..+. .|+.|+++.+.... ......+++|+.|++++|.+.
T Consensus 166 -~~l~----------------------------~L~~L~Ls~N~l~~------------~~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 166 -ASSD----------------------------TLEHLNLQYNFIYD------------VKGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp -GGTT----------------------------TCCEEECTTSCCCE------------EECCCCCTTCCEEECCSSCCC
T ss_pred -hhCC----------------------------cccEEecCCCcccc------------ccccccCCCCCEEECCCCCCC
Confidence 0222 23333332221110 012234788999999999988
Q ss_pred CcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCc-eEeCccccCCCCCCCCCCCCCcccccCccccc
Q 007979 411 TVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSV-KRVGNEILGIESDHHDSSSSSSVIIAFPKLQS 489 (582)
Q Consensus 411 ~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 489 (582)
.+ |..+..+++|+.|++++|......+.++.+++|+.|++++|+.. ..+|.. ...+++|+.
T Consensus 205 ~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~-----------------~~~l~~L~~ 266 (487)
T 3oja_A 205 FM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------------FSKNQRVQT 266 (487)
T ss_dssp EE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH-----------------HTTCHHHHH
T ss_pred CC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH-----------------HHhCCCCcE
Confidence 87 66788899999999999977764445888899999999988733 122221 235677777
Q ss_pred ccccccc
Q 007979 490 LFIEDLP 496 (582)
Q Consensus 490 L~l~~~~ 496 (582)
|.+..+.
T Consensus 267 l~~~~~~ 273 (487)
T 3oja_A 267 VAKQTVK 273 (487)
T ss_dssp HHHHHHH
T ss_pred Eeccccc
Confidence 7776443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=1.5e-17 Score=158.20 Aligned_cols=127 Identities=24% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccchh
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLPET 251 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~ 251 (582)
+.|++|++++|.+... .+..|.++++|++|++++| .+..++ ..++.+++|++|++++|.+.+..|..
T Consensus 28 ~~l~~L~ls~n~l~~~------~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL------GSYSFFSFPELQVLDLSRC------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEE------CTTTTTTCTTCSEEECTTC------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCCCccccc------CHhHhccccCCcEEECCCC------cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 4677777777765321 2333667777777777773 333343 35677777777777777733333456
Q ss_pred hhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCC-cCCccCCCCCCCCccCee
Q 007979 252 LCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLG-HMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~ 312 (582)
+.++++|++|++++|. +..++ ..++.+++|++|++++|.... .+|..++.+++|++|++.
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 7777777777777776 44443 356777777777777775433 245556666666666543
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1.7e-18 Score=170.13 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=141.9
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHccC--CceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccc-cch
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFGKL--TSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRK-LPE 250 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~ 250 (582)
.++.++++++.+. +..+..+ +.+++|++++|. +...+..+..+++|++|++++|.+... +|.
T Consensus 48 ~~~~l~l~~~~~~---------~~~~~~~~~~~l~~L~l~~n~------l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 48 LWQTLDLTGKNLH---------PDVTGRLLSQGVIAFRCPRSF------MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp TSSEEECTTCBCC---------HHHHHHHHHTTCSEEECTTCE------ECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred hheeeccccccCC---------HHHHHhhhhccceEEEcCCcc------ccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 3567777776542 2334555 788999998843 334444566788999999999884434 777
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCC--cCCccCCCCCCCCccCeeeecCCCCcCCCCcccc
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLG--HMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRL 328 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 328 (582)
.+..+++|++|++++|......|..++.+++|++|++++|..+. .++..+..+++|++|++.++...
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l----------- 181 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF----------- 181 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC-----------
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc-----------
Confidence 88889999999999987544677778888999999998884333 24444555666666654332100
Q ss_pred ccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCC-CCcEEEEeeE
Q 007979 329 ESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPL-NLKELFIGSY 407 (582)
Q Consensus 329 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 407 (582)
....+...+..++ +|++|++++|
T Consensus 182 --------------------------------------------------------~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 182 --------------------------------------------------------TEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHSCTTCCEEECCSC
T ss_pred --------------------------------------------------------ChHHHHHHHHhcccCCCEEEeCCC
Confidence 0011222333455 7777777777
Q ss_pred e--CC-CcCCchhhcCcCCcEEEEeCCCC-CC-cCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccc
Q 007979 408 G--GN-TVSPSWMMSLTNLRSLNLHLCEN-CE-QLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVII 482 (582)
Q Consensus 408 ~--~~-~~~p~~~~~l~~L~~L~l~~~~~-~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (582)
. +. ..+|..+..+++|+.|++++|.. .. .++.+..+++|++|++++|..+....... +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------------l~ 269 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE----------------LG 269 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG----------------GG
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH----------------Hh
Confidence 3 32 12255666788888888888863 32 34446777888888888776322111000 23
Q ss_pred cCccccccccccc
Q 007979 483 AFPKLQSLFIEDL 495 (582)
Q Consensus 483 ~~~~L~~L~l~~~ 495 (582)
.+++|++|++++|
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 5777888877776
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4.7e-17 Score=155.40 Aligned_cols=201 Identities=16% Similarity=0.045 Sum_probs=119.0
Q ss_pred ccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcccc
Q 007979 169 TCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 169 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~l 248 (582)
+.++++++.++++++.+.. +|..+ .+.+++|++++|.+.+ ..|..+..+++|++|++++|. +..+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-------ip~~~--~~~l~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-------LPPDL--PKDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-------CCSCC--CTTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSC-CCEE
T ss_pred ccccCCccEEECCCCCCCc-------CCCCC--CCCCCEEEcCCCcCCc-----cCHHHhhcCCCCCEEECCCCc-cCcc
Confidence 4556677777777766432 12111 2567777777743322 123556677777777777776 5555
Q ss_pred chhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCcccc
Q 007979 249 PETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRL 328 (582)
Q Consensus 249 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 328 (582)
|.. +.+++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|++..+....
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~---------- 138 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT---------- 138 (290)
T ss_dssp ECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC----------
T ss_pred cCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc----------
Confidence 543 667777777777766 56667666777777777777764433333445556666665533221110
Q ss_pred ccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEe
Q 007979 329 ESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYG 408 (582)
Q Consensus 329 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 408 (582)
++ ...+..+++|+.|++++|.
T Consensus 139 -------------------~~----------------------------------------~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 139 -------------------LP----------------------------------------PGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp -------------------CC----------------------------------------TTTTTTCTTCCEEECTTSC
T ss_pred -------------------cC----------------------------------------hhhcccccCCCEEECCCCc
Confidence 00 0123345677777777777
Q ss_pred CCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeeccccc
Q 007979 409 GNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMK 455 (582)
Q Consensus 409 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~ 455 (582)
+..+.+..+..+++|+.|++++|......+.+..+++|+.|++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 77663444566777777777777655433345666677777777765
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=3.3e-17 Score=158.16 Aligned_cols=198 Identities=17% Similarity=0.250 Sum_probs=135.0
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP 249 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp 249 (582)
.++++|+.|+++++.+.. ++. +..+++|++|++++| .+..++. ++.+++|++|++++|. +..+|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-------l~~-~~~l~~L~~L~L~~n------~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~ 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-------IEG-VQYLNNLIGLELKDN------QITDLAP-LKNLTKITELELSGNP-LKNVS 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCSS------CCCCCGG-GTTCCSCCEEECCSCC-CSCCG
T ss_pred HHcCCcCEEEeeCCCccC-------chh-hhccCCCCEEEccCC------cCCCChh-HccCCCCCEEEccCCc-CCCch
Confidence 456777888887776543 222 667778888888773 4445555 7777888888888877 66665
Q ss_pred hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccc
Q 007979 250 ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLE 329 (582)
Q Consensus 250 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~ 329 (582)
.+..+++|++|++++|. +..+|. +..+++|++|++++|.. ..++. ++.+++|+.|++..+....
T Consensus 102 -~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~----------- 165 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSD----------- 165 (308)
T ss_dssp -GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCC-----------
T ss_pred -hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCC-----------
Confidence 57778888888888876 555654 77778888888877743 33332 5555556655543221110
Q ss_pred cccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeC
Q 007979 330 SLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGG 409 (582)
Q Consensus 330 ~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 409 (582)
+ ..+..+++|+.|++++|.+
T Consensus 166 -----------------------------------------------------------~-~~l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 166 -----------------------------------------------------------L-TPLANLSKLTTLKADDNKI 185 (308)
T ss_dssp -----------------------------------------------------------C-GGGTTCTTCCEEECCSSCC
T ss_pred -----------------------------------------------------------C-hhhcCCCCCCEEECCCCcc
Confidence 0 0134567888899988888
Q ss_pred CCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 410 NTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 410 ~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
..+ +. +..+++|+.|++++|.... ++.+..+++|+.|++++|+ ++..|..
T Consensus 186 ~~~-~~-l~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~-i~~~~~~ 235 (308)
T 1h6u_A 186 SDI-SP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQT-ITNQPVF 235 (308)
T ss_dssp CCC-GG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEEEE-EECCCEE
T ss_pred CcC-hh-hcCCCCCCEEEccCCccCc-cccccCCCCCCEEEccCCe-eecCCee
Confidence 776 43 7889999999999996654 3458889999999999987 6655543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.5e-17 Score=152.02 Aligned_cols=120 Identities=26% Similarity=0.339 Sum_probs=65.2
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccchh-
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLPET- 251 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~- 251 (582)
..++++++++.+.. +|..+ .++|++|++++| .+..+| ..++++++|++|++++|. +..+|..
T Consensus 17 ~~~~l~~~~~~l~~-------ip~~~--~~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-------IPSNI--PADTKKLDLQSN------KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSCCSS-------CCSCC--CTTCSEEECCSS------CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT
T ss_pred CCCEEEccCCCCCc-------cCCCC--CCCCCEEECcCC------CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh
Confidence 35666666665432 12111 245667777663 333443 356666677777776666 4455543
Q ss_pred hhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCccCCCCCCCCccC
Q 007979 252 LCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLD 310 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 310 (582)
+.++++|++|++++|. +..+|. .+..+++|++|++++|......+..++.+++|++|+
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 4566677777776665 444443 346666666666666644333333344455555544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=4.4e-17 Score=157.29 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=147.7
Q ss_pred HccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
+..+++|++|++++ + .+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .+..
T Consensus 37 ~~~l~~L~~L~l~~-----~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFG-----T-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTT-----S-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HHHcCCcCEEEeeC-----C-CccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcC
Confidence 34567889999998 3 555666 58889999999999998 777776 8899999999999987 66665 5888
Q ss_pred CCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcc
Q 007979 279 LINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLK 358 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 358 (582)
+++|++|++++|.. ..++. +..+++|+.|++..+.... +
T Consensus 106 l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~------------~--------------------------- 144 (308)
T 1h6u_A 106 LQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN------------I--------------------------- 144 (308)
T ss_dssp CTTCCEEECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC------------C---------------------------
T ss_pred CCCCCEEECCCCCC-CCchh-hcCCCCCCEEECCCCccCc------------C---------------------------
Confidence 99999999998854 44443 6677777777654322110 0
Q ss_pred cCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC
Q 007979 359 LDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP 438 (582)
Q Consensus 359 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~ 438 (582)
..+..+++|+.|++++|.+..+ +. +..+++|+.|++++|.... ++
T Consensus 145 --------------------------------~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~ 189 (308)
T 1h6u_A 145 --------------------------------SPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-IS 189 (308)
T ss_dssp --------------------------------GGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG
T ss_pred --------------------------------ccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Ch
Confidence 0133467899999999988876 54 8899999999999996544 45
Q ss_pred CCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccc
Q 007979 439 PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWD 502 (582)
Q Consensus 439 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 502 (582)
.+..+++|++|++++|. ++.++. ...+++|+.|+++++ .+...+
T Consensus 190 ~l~~l~~L~~L~L~~N~-l~~~~~------------------l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQ-ISDVSP------------------LANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp GGGGCTTCCEEECTTSC-CCBCGG------------------GTTCTTCCEEEEEEE-EEECCC
T ss_pred hhcCCCCCCEEEccCCc-cCcccc------------------ccCCCCCCEEEccCC-eeecCC
Confidence 58899999999999997 655542 237899999999988 455444
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=6.3e-17 Score=154.54 Aligned_cols=196 Identities=20% Similarity=0.159 Sum_probs=133.4
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
...+.+....+....+|..+. +.++.|++++|.+.. ..+..|..+++|++|++++|. +..+|.. +
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~n~------l~~~~~~-~ 74 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYT------FSLATLMPYTRLTQLNLDRAE------LTKLQVD-G 74 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSE------EEGGGGTTCTTCCEEECTTSC------CCEEECC-S
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCc------cCHHHhhcCCCCCEEECCCCc------cCcccCC-C
Confidence 345666666666666666553 678888888887543 234447788888888888843 4344433 6
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
.+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 78888888888888 77888778888888888888887 55555 55788888888888888544333333566777777
Q ss_pred cCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHH
Q 007979 309 LDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQL 388 (582)
Q Consensus 309 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 388 (582)
|++..+.... ++
T Consensus 153 L~L~~N~l~~-----------------------------l~--------------------------------------- 164 (290)
T 1p9a_G 153 LSLANNNLTE-----------------------------LP--------------------------------------- 164 (290)
T ss_dssp EECTTSCCSC-----------------------------CC---------------------------------------
T ss_pred EECCCCcCCc-----------------------------cC---------------------------------------
Confidence 7643321110 00
Q ss_pred HHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCC
Q 007979 389 LLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCE 432 (582)
Q Consensus 389 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 432 (582)
...+..+++|+.|++++|.+..+ |..+..+++|+.|++++|+
T Consensus 165 -~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 -AGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred -HHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 01233567788888888888876 7777777888888888875
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=8.2e-17 Score=152.59 Aligned_cols=101 Identities=27% Similarity=0.339 Sum_probs=55.1
Q ss_pred ccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc-cccc
Q 007979 200 GKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ-GIGK 278 (582)
Q Consensus 200 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 278 (582)
..+++|+.|+++++ .+..++ .++.+++|++|++++|. +..++ .++++++|++|++++|. +..+|. .++.
T Consensus 38 ~~l~~L~~L~l~~~------~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 107 (272)
T 3rfs_A 38 NELNSIDQIIANNS------DIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDK 107 (272)
T ss_dssp HHHTTCCEEECTTS------CCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred ccccceeeeeeCCC------Cccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcC
Confidence 44566666666662 333332 35666666666666666 44443 56666666666666665 334333 3466
Q ss_pred CCCCceeecCCccCCCcCCccCCCCCCCCccC
Q 007979 279 LINMKHLLNERTDSLGHMPAGIARLPSLRTLD 310 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 310 (582)
+++|++|++++|......+..++.+++|++|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 66666666666643322222234444444444
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=5.7e-17 Score=154.22 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=35.5
Q ss_pred EEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeeccccc
Q 007979 401 ELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMK 455 (582)
Q Consensus 401 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 455 (582)
+|++++|.+..+ |.......+|+.|++++|......+. ++.+++|+.|++++|+
T Consensus 181 ~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCccccc-CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 566666666655 44444445788888888765544333 5778888888888776
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.9e-16 Score=155.95 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred CCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC--CCCCCCcceeecccccCceEeCccccCCCCCCCCC
Q 007979 397 LNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP--LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDS 474 (582)
Q Consensus 397 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 474 (582)
..++.|++++|.+..+ |.......+|+.|.+.++...+.+|. ++.+++|++|++++|. ++.+|..
T Consensus 154 ~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~----------- 220 (350)
T 4ay9_X 154 FESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY----------- 220 (350)
T ss_dssp SSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS-----------
T ss_pred hhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh-----------
Confidence 3578888888888877 66555667888999987777777775 7888999999998886 7777653
Q ss_pred CCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccc
Q 007979 475 SSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAV 526 (582)
Q Consensus 475 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 526 (582)
.|.+|+.|.+.++.+++.++. +..+++|+.+++.+
T Consensus 221 --------~~~~L~~L~~l~~~~l~~lP~---------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --------GLENLKKLRARSTYNLKKLPT---------LEKLVALMEASLTY 255 (350)
T ss_dssp --------SCTTCCEEECTTCTTCCCCCC---------TTTCCSCCEEECSC
T ss_pred --------hhccchHhhhccCCCcCcCCC---------chhCcChhhCcCCC
Confidence 466677777777767766653 34788888888865
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=154.90 Aligned_cols=229 Identities=15% Similarity=0.115 Sum_probs=146.7
Q ss_pred CCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc--cccCCCCEEecCCCCCcccc
Q 007979 171 RIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI--EKLVHLRYLNLSSVTLIRKL 248 (582)
Q Consensus 171 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i--~~L~~L~~L~L~~~~~~~~l 248 (582)
....++.+.+.++.+....+. . +.. +..+++|++|++++|.+.+ ..|..+ +.+++|++|++++|.+.+..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~-~-~~~-~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLV-G-ALR-VLAYSRLKELTLEDLKITG-----TMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHH-H-HHH-HHHHSCCCEEEEESCCCBS-----CCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHH-H-HHH-hcccCceeEEEeeCCEecc-----chhhhhhhccCCCCCEEEeecccccchh
Confidence 334577888888765432211 1 222 3345679999999954433 456666 88999999999999955444
Q ss_pred c----hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCc--CC--ccCCCCCCCCccCeeeecCCCCc
Q 007979 249 P----ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGH--MP--AGIARLPSLRTLDEFHVSGGEGV 320 (582)
Q Consensus 249 p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~~ 320 (582)
| ..+..+++|++|++++|......|..++.+++|++|++++|..... ++ ..++.+++|++|++..+....
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 211 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-- 211 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC--
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc--
Confidence 3 3456799999999999985444557788999999999999964431 22 223567788888755432210
Q ss_pred CCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCc
Q 007979 321 DGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLK 400 (582)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (582)
.+ ......+..+++|+
T Consensus 212 ------------------------------l~----------------------------------~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 212 ------------------------------PT----------------------------------GVCAALAAAGVQPH 227 (310)
T ss_dssp ------------------------------HH----------------------------------HHHHHHHHHTCCCS
T ss_pred ------------------------------hH----------------------------------HHHHHHHhcCCCCC
Confidence 00 00001123456777
Q ss_pred EEEEeeEeCCCcCCchhhcC---cCCcEEEEeCCCCCCcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCC
Q 007979 401 ELFIGSYGGNTVSPSWMMSL---TNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSS 476 (582)
Q Consensus 401 ~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~ 476 (582)
+|++++|.+....|..+..+ ++|++|++++|... .+|. + .++|++|++++|. ++.+|.
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~-l~~~~~-------------- 289 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNR-LNRAPQ-------------- 289 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCC-CCSCCC--------------
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCc-CCCCch--------------
Confidence 77777777776656555554 57888888887655 4443 3 2678888887776 544432
Q ss_pred CCcccccCccccccccccc
Q 007979 477 SSSVIIAFPKLQSLFIEDL 495 (582)
Q Consensus 477 ~~~~~~~~~~L~~L~l~~~ 495 (582)
...+++|+.|+++++
T Consensus 290 ----~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 ----PDELPEVDNLTLDGN 304 (310)
T ss_dssp ----TTSCCCCSCEECSST
T ss_pred ----hhhCCCccEEECcCC
Confidence 125677777777766
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=6.2e-17 Score=153.42 Aligned_cols=204 Identities=21% Similarity=0.207 Sum_probs=150.8
Q ss_pred cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccc
Q 007979 168 STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRK 247 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~ 247 (582)
....+++|+.|.+.++.+.. ++. +..+++|++|++++|. +..+ ..++.+++|++|++++|. +..
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-------~~~-l~~l~~L~~L~l~~n~------l~~~-~~l~~l~~L~~L~L~~n~-l~~ 99 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-------VQG-IQYLPNVRYLALGGNK------LHDI-SALKELTNLTYLILTGNQ-LQS 99 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECTTSC------CCCC-GGGTTCTTCCEEECTTSC-CCC
T ss_pred ccccccceeeeeeCCCCccc-------ccc-cccCCCCcEEECCCCC------CCCc-hhhcCCCCCCEEECCCCc-cCc
Confidence 34567889999999987643 222 7889999999999954 4444 368899999999999998 555
Q ss_pred cc-hhhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCc
Q 007979 248 LP-ETLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKG 325 (582)
Q Consensus 248 lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~ 325 (582)
+| ..++++++|++|++++|. +..+|. .++.+++|++|++++|......+..++.+++|++|++..+....
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------- 171 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------- 171 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------
T ss_pred cChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-------
Confidence 55 457899999999999998 555554 47899999999999996543333446778888888755432111
Q ss_pred cccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEe
Q 007979 326 CRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIG 405 (582)
Q Consensus 326 ~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 405 (582)
++ ...+..+++|+.|+++
T Consensus 172 ----------------------~~----------------------------------------~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 172 ----------------------LP----------------------------------------EGVFDKLTQLKDLRLY 189 (272)
T ss_dssp ----------------------CC----------------------------------------TTTTTTCTTCCEEECC
T ss_pred ----------------------cC----------------------------------------HHHhcCCccCCEEECC
Confidence 00 0123456788999999
Q ss_pred eEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 406 SYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 406 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
+|.+....|..+..+++|+.|++++|... +.+++|+.|+++.|.....+|..
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence 99888875667889999999999999543 45678999999888765566654
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.6e-16 Score=149.05 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=40.1
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC-CCCCCCcceeeccccc
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP-LGKLPSLEKLYISDMK 455 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 455 (582)
.+++|++|++++|.+..+.+..+..+++|+.|++++|......+. +..+++|+.|++++|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 345566666666666655344566777788888877755543333 6677888888887776
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2.8e-18 Score=171.76 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=90.4
Q ss_pred cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccc-----ccccccccccccCCCCEEe
Q 007979 164 SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCS-----SILDIPRNIEKLVHLRYLN 238 (582)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~-----~l~~lp~~i~~L~~L~~L~ 238 (582)
.++..+..+++|+.|++++|.+... ....++..+..+++|++|+|++|.+.... .+..+...+..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 4455667788899999988875432 11223444678888999999885432100 1112223346788889999
Q ss_pred cCCCCCcc----ccchhhhccCCccEEecCCCcCcc----ccccccccC---------CCCceeecCCccCC-CcCC---
Q 007979 239 LSSVTLIR----KLPETLCELYNLEKLDISYCINLK----ALPQGIGKL---------INMKHLLNERTDSL-GHMP--- 297 (582)
Q Consensus 239 L~~~~~~~----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p--- 297 (582)
|++|.+.. .+|..+..+++|++|+|++|.... .++..+..+ ++|++|++++|... ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 98888443 377788888889999998887422 233334444 78888888887543 1222
Q ss_pred ccCCCCCCCCccCe
Q 007979 298 AGIARLPSLRTLDE 311 (582)
Q Consensus 298 ~~i~~l~~L~~L~~ 311 (582)
..+..+++|++|++
T Consensus 181 ~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 181 KTFQSHRLLHTVKM 194 (386)
T ss_dssp HHHHHCTTCCEEEC
T ss_pred HHHHhCCCcCEEEC
Confidence 23334555555543
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.5e-16 Score=146.28 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=153.0
Q ss_pred ccccchhhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCc-cCCCCCCCCccCeee-ecCCCCcC
Q 007979 245 IRKLPETLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPA-GIARLPSLRTLDEFH-VSGGEGVD 321 (582)
Q Consensus 245 ~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~-~~~~~~~~ 321 (582)
+..+|. +. .+|++|++++|. +..+|. .++.+++|++|++++|..+..++. .+..+++|++|++.+ +....
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---
Confidence 677886 43 489999999988 666665 688999999999999964555554 567788888887665 21110
Q ss_pred CCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcE
Q 007979 322 GRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKE 401 (582)
Q Consensus 322 ~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 401 (582)
++ ...+..+++|++
T Consensus 96 --------------------------i~----------------------------------------~~~f~~l~~L~~ 109 (239)
T 2xwt_C 96 --------------------------ID----------------------------------------PDALKELPLLKF 109 (239)
T ss_dssp --------------------------EC----------------------------------------TTSEECCTTCCE
T ss_pred --------------------------cC----------------------------------------HHHhCCCCCCCE
Confidence 00 012345678999
Q ss_pred EEEeeEeCCCcCCchhhcCcCCc---EEEEeCC-CCCCcCCC-CCCCCCcc-eeecccccCceEeCccccCCCCCCCCCC
Q 007979 402 LFIGSYGGNTVSPSWMMSLTNLR---SLNLHLC-ENCEQLPP-LGKLPSLE-KLYISDMKSVKRVGNEILGIESDHHDSS 475 (582)
Q Consensus 402 L~l~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~~~~~l~~-l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 475 (582)
|++++|.+..+ |. +..+++|+ .|++++| ......+. ++.+++|+ .|++++|. ++.+|...+.
T Consensus 110 L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--------- 177 (239)
T 2xwt_C 110 LGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--------- 177 (239)
T ss_dssp EEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT---------
T ss_pred EeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC---------
Confidence 99999988886 76 77788888 9999999 44443333 88899999 99999887 7788765432
Q ss_pred CCCcccccCcccccccccccccccccccCcccCCCCCCccc-ccccceecccccccccCCcCCCCCCCcceEEEeCCcch
Q 007979 476 SSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIM-PRLSALAIAVCPKLKALPDHIHQTTTLKGLSIWGCDLL 554 (582)
Q Consensus 476 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~-~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~~C~~l 554 (582)
. ++|+.|++++++.++.++... +..+ ++|+.|++++ +.++.+|.. .+++|+.|++.++..+
T Consensus 178 -------~-~~L~~L~L~~n~~l~~i~~~~-------~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 178 -------G-TKLDAVYLNKNKYLTVIDKDA-------FGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp -------T-CEEEEEECTTCTTCCEECTTT-------TTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC---
T ss_pred -------C-CCCCEEEcCCCCCcccCCHHH-------hhccccCCcEEECCC-CccccCChh--HhccCceeeccCccCC
Confidence 3 789999999997788776543 2367 9999999999 568888866 4889999999988753
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1e-16 Score=157.81 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=28.0
Q ss_pred CCcEEEEee-EeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeC
Q 007979 398 NLKELFIGS-YGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVG 461 (582)
Q Consensus 398 ~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~ 461 (582)
+|++|.+.+ +.+..+.+..+..+++|+.|++++|... .+|. +.+.+|+.|.+.++..++.+|
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~-~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS-YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS-SSCTTCCEEECTTCTTCCCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh-hhhccchHhhhccCCCcCcCC
Confidence 455555543 2333332233455555555555555322 2332 223444444444444455444
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.8e-18 Score=168.53 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=170.4
Q ss_pred CCceeEEEeCCCcccccccccccccccccc--CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccc-ccccccc
Q 007979 202 LTSLRALDIGNWSATLCSSILDIPRNIEKL--VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKA-LPQGIGK 278 (582)
Q Consensus 202 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L--~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~ 278 (582)
...++.++++++.+ . |..+..+ +++++|++++|. +...+..+..+++|++|++++|..... +|..+..
T Consensus 46 ~~~~~~l~l~~~~~------~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 46 ESLWQTLDLTGKNL------H--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp STTSSEEECTTCBC------C--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred chhheeeccccccC------C--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 44588899987432 2 3556666 889999999988 554555577889999999999874333 7777888
Q ss_pred CCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcc
Q 007979 279 LINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLK 358 (582)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~ 358 (582)
+++|++|++++|......|..++.+++|++|++.++...
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l----------------------------------------- 155 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF----------------------------------------- 155 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-----------------------------------------
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-----------------------------------------
Confidence 899999999988654456666667777777764432100
Q ss_pred cCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeE-eCCCc-CCchhhcCc-CCcEEEEeCCC--C
Q 007979 359 LDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSY-GGNTV-SPSWMMSLT-NLRSLNLHLCE--N 433 (582)
Q Consensus 359 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~p~~~~~l~-~L~~L~l~~~~--~ 433 (582)
....+...+..+++|++|++++| .+... .+..+..++ +|++|++++|. .
T Consensus 156 --------------------------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 156 --------------------------SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp --------------------------CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred --------------------------CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 01122333455788999999999 76642 267788999 99999999994 3
Q ss_pred C-CcCCC-CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCC
Q 007979 434 C-EQLPP-LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHP 511 (582)
Q Consensus 434 ~-~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 511 (582)
. ..++. +..+++|++|++++|..++...... +..+++|++|++++|..+..... .
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----------------l~~l~~L~~L~l~~~~~~~~~~~-------~ 266 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE----------------FFQLNYLQHLSLSRCYDIIPETL-------L 266 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG----------------GGGCTTCCEEECTTCTTCCGGGG-------G
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH----------------HhCCCCCCEeeCCCCCCCCHHHH-------H
Confidence 3 23333 5678999999999998544322111 34779999999999974332211 1
Q ss_pred CCcccccccceecccccccccCCc-CCCCC-CCcceEEEeCCcchHHHhc
Q 007979 512 FIDIMPRLSALAIAVCPKLKALPD-HIHQT-TTLKGLSIWGCDLLEERYR 559 (582)
Q Consensus 512 ~~~~~~~L~~L~l~~C~~L~~lp~-~~~~l-~~L~~L~i~~C~~l~~~~~ 559 (582)
.+..+++|+.|++.+| ++. .+..+ .+|+.|++. |..++....
T Consensus 267 ~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTC
T ss_pred HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccC
Confidence 2458999999999998 332 22222 236667775 444554443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=153.85 Aligned_cols=226 Identities=16% Similarity=0.122 Sum_probs=145.2
Q ss_pred CCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhh--hccCCccEEecCCCcCccccc----cc
Q 007979 202 LTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETL--CELYNLEKLDISYCINLKALP----QG 275 (582)
Q Consensus 202 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~ 275 (582)
...++.|.+.++.+.. ..+..++.. ..+++|++|++++|.+.+..|..+ .++++|++|++++|......| ..
T Consensus 63 ~~~l~~l~l~~~~~~~-~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPA-QLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBH-HHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCH-HHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 3457788888754443 123333322 245679999999998667777777 889999999999988544333 33
Q ss_pred cccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHH
Q 007979 276 IGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAK 355 (582)
Q Consensus 276 i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 355 (582)
+..+++|++|++++|......|..++.+++|++|++.++....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------------------- 183 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG------------------------------------- 183 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH-------------------------------------
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc-------------------------------------
Confidence 4578899999998887655555667777777777754432110
Q ss_pred hcccCCCCCcceEEEEeeecCCCCCCccchHHHHH--hhCCCCCCCcEEEEeeEeCCCcCCc----hhhcCcCCcEEEEe
Q 007979 356 RLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLL--EALQPPLNLKELFIGSYGGNTVSPS----WMMSLTNLRSLNLH 429 (582)
Q Consensus 356 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~ 429 (582)
...+. ..+..+++|++|++++|.+..+ |. .+..+++|++|+++
T Consensus 184 ------------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 184 ------------------------------ERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp ------------------------------HHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECT
T ss_pred ------------------------------chhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECC
Confidence 00011 1124567888888888887654 43 24678899999999
Q ss_pred CCCCCCcCCC-CCCC---CCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCc
Q 007979 430 LCENCEQLPP-LGKL---PSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGI 505 (582)
Q Consensus 430 ~~~~~~~l~~-l~~l---~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 505 (582)
+|......|. +..+ ++|++|++++|. ++.+|.. .+++|++|+++++ +++.++.
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-------------------~~~~L~~L~Ls~N-~l~~~~~-- 289 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG-------------------LPAKLRVLDLSSN-RLNRAPQ-- 289 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-------------------CCSCCSCEECCSC-CCCSCCC--
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-------------------hcCCCCEEECCCC-cCCCCch--
Confidence 9877766443 4443 688888888776 5555442 2367777777766 4544422
Q ss_pred ccCCCCCCcccccccceecccc
Q 007979 506 TRTGHPFIDIMPRLSALAIAVC 527 (582)
Q Consensus 506 ~~~~~~~~~~~~~L~~L~l~~C 527 (582)
...+++|+.|+++++
T Consensus 290 -------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 -------PDELPEVDNLTLDGN 304 (310)
T ss_dssp -------TTSCCCCSCEECSST
T ss_pred -------hhhCCCccEEECcCC
Confidence 225566666666663
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=6.6e-18 Score=179.56 Aligned_cols=340 Identities=14% Similarity=0.129 Sum_probs=183.0
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccc--ccccccccCCCCEEecCCCCCccc
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILD--IPRNIEKLVHLRYLNLSSVTLIRK 247 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~ 247 (582)
..+++|+.|+++++.+.. ..+......+++|++|++++ |..+.. ++..+..+++|++|++++|.+.+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~-----~~~~~l~~~~~~L~~L~L~~-----~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTD-----DCLELIAKSFKNFKVLVLSS-----CEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHCTTCCEEEEESCBCCH-----HHHHHHHHHCTTCCEEEEES-----CEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HhCCCCCeEEeeCcEEcH-----HHHHHHHHhCCCCcEEeCCC-----cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 468899999999997532 22333234789999999998 433333 555566899999999999983332
Q ss_pred ----cchhhhccCCccEEecCCCc-Cc--cccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCC--
Q 007979 248 ----LPETLCELYNLEKLDISYCI-NL--KALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGE-- 318 (582)
Q Consensus 248 ----lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~-- 318 (582)
++.....+++|++|++++|. .+ ..++..+..+++|++|++.+|.....+|..+..+++|+.|++..+...-
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 33334477899999999986 11 1233334567999999999996666677777788899998754332100
Q ss_pred --------------------CcCCCCcccccc-ccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCC
Q 007979 319 --------------------GVDGRKGCRLES-LKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKES 377 (582)
Q Consensus 319 --------------------~~~~~~~~~~~~-l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 377 (582)
.........+.. +..+.+|+.+.+..+. +.. ......+..+++|+.|.+..+.
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~--~~l~~~~~~~~~L~~L~l~~~~--- 325 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQS--YDLVKLLCQCPKLQRLWVLDYI--- 325 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCH--HHHHHHHTTCTTCCEEEEEGGG---
T ss_pred hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCH--HHHHHHHhcCCCcCEEeCcCcc---
Confidence 000000000110 0122333333333322 111 1111123345566666665331
Q ss_pred CCCCccchHHHHHhhCCCCCCCcEEEEeeE---------eCCCcCCchh-hcCcCCcEEEEeCCCCCCcCC-CC-CCCCC
Q 007979 378 GGRRKNEHDQLLLEALQPPLNLKELFIGSY---------GGNTVSPSWM-MSLTNLRSLNLHLCENCEQLP-PL-GKLPS 445 (582)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---------~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~l~-~l-~~l~~ 445 (582)
....+......+++|++|++.++ .+.......+ ..+++|+.|.+..+....... .+ ..+++
T Consensus 326 -------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 326 -------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398 (594)
T ss_dssp -------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred -------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence 11222222223556666666331 1111000111 235666666555443332111 12 23567
Q ss_pred cceeecc-----cccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCc-ccccc
Q 007979 446 LEKLYIS-----DMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFID-IMPRL 519 (582)
Q Consensus 446 L~~L~L~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~-~~~~L 519 (582)
|+.|+++ +|..++..|.... .......+++|++|++++ .+...... .+. .+++|
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~-----------~~~l~~~~~~L~~L~L~~--~l~~~~~~-------~l~~~~~~L 458 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIG-----------FGAIVEHCKDLRRLSLSG--LLTDKVFE-------YIGTYAKKM 458 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHH-----------HHHHHHHCTTCCEEECCS--SCCHHHHH-------HHHHHCTTC
T ss_pred cceeEeecccCCCcccccCCchhhH-----------HHHHHhhCCCccEEeecC--cccHHHHH-------HHHHhchhc
Confidence 7777776 3444443321100 000023567788877755 33221111 111 37889
Q ss_pred cceeccccccccc--CCcCCCCCCCcceEEEeCCcc
Q 007979 520 SALAIAVCPKLKA--LPDHIHQTTTLKGLSIWGCDL 553 (582)
Q Consensus 520 ~~L~l~~C~~L~~--lp~~~~~l~~L~~L~i~~C~~ 553 (582)
+.|++++|. ++. ++.....+++|++|++++|+.
T Consensus 459 ~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 459 EMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 999999876 322 111124588999999999986
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=3.9e-18 Score=170.73 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=131.5
Q ss_pred HHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCC---Cccccchhh-------hccCCccEEecC
Q 007979 195 LKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVT---LIRKLPETL-------CELYNLEKLDIS 264 (582)
Q Consensus 195 ~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~---~~~~lp~~i-------~~L~~L~~L~L~ 264 (582)
++..+..+++|++|+|++|.+.. .....++..+..+++|++|++++|. +.+.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGT-EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECH-HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCH-HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 44557889999999999976654 2344466668889999999999874 223455554 688999999999
Q ss_pred CCcCcc----ccccccccCCCCceeecCCccCCCcCC----ccCCCC---------CCCCccCeeeecCCCCcCCCCccc
Q 007979 265 YCINLK----ALPQGIGKLINMKHLLNERTDSLGHMP----AGIARL---------PSLRTLDEFHVSGGEGVDGRKGCR 327 (582)
Q Consensus 265 ~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~~p----~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 327 (582)
+|.... .+|..+..+++|++|++++|......+ ..+..+ ++|++|++..+.... ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------~~ 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------GS 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-------GG
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc-------HH
Confidence 998444 377788999999999999996532222 222222 566666654332211 00
Q ss_pred cccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh-hCCCCCCCcEEEEee
Q 007979 328 LESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE-ALQPPLNLKELFIGS 406 (582)
Q Consensus 328 ~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~ 406 (582)
+. .....+..++.|+.|.++.+... ......+.. .+..+++|++|+|++
T Consensus 176 ~~------------------------~l~~~l~~~~~L~~L~L~~n~l~------~~g~~~l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 176 MK------------------------EWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp HH------------------------HHHHHHHHCTTCCEEECCSSCCC------HHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred HH------------------------HHHHHHHhCCCcCEEECcCCCCC------HhHHHHHHHHHhhcCCCccEEECcC
Confidence 00 00011223334444444433211 001111222 555666777777777
Q ss_pred EeCC----CcCCchhhcCcCCcEEEEeCCCCCCc----CCC-C--CCCCCcceeeccccc
Q 007979 407 YGGN----TVSPSWMMSLTNLRSLNLHLCENCEQ----LPP-L--GKLPSLEKLYISDMK 455 (582)
Q Consensus 407 ~~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~----l~~-l--~~l~~L~~L~L~~~~ 455 (582)
|.+. ..+|..+..+++|+.|+|++|..... ++. + +.+++|++|+|++|.
T Consensus 226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 6663 22255666667777777777654432 222 2 336667777776665
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=2.5e-17 Score=163.15 Aligned_cols=65 Identities=17% Similarity=0.010 Sum_probs=41.0
Q ss_pred hhCCCC-CCCcEEEEeeEeCCCc----CCchhhc-CcCCcEEEEeCCCCCCcCC-----CCCCCCCcceeeccccc
Q 007979 391 EALQPP-LNLKELFIGSYGGNTV----SPSWMMS-LTNLRSLNLHLCENCEQLP-----PLGKLPSLEKLYISDMK 455 (582)
Q Consensus 391 ~~l~~~-~~L~~L~l~~~~~~~~----~p~~~~~-l~~L~~L~l~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 455 (582)
..+... ++|++|++++|.+... ++..+.. .++|++|++++|......+ .+..+++|++|++++|.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 344444 4788888888877652 1444444 3578888888876544322 14667778888887775
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=8.9e-15 Score=136.75 Aligned_cols=175 Identities=17% Similarity=0.117 Sum_probs=114.1
Q ss_pred ceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCc
Q 007979 204 SLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMK 283 (582)
Q Consensus 204 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 283 (582)
..+++++++ ..+..+|..+. .+|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++|+
T Consensus 15 ~~~~l~~~~------~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQG------KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTT------CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCC------CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 456677776 25556666554 5677777777774344444577777777777777763333344467777777
Q ss_pred eeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCC
Q 007979 284 HLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKK 363 (582)
Q Consensus 284 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~ 363 (582)
+|++++|......+..+..+++|++|++.++.... ++
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------------~~-------------- 123 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------------------------LP-------------- 123 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------------CC--------------
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-----------------------------cC--------------
Confidence 77777775443333445666666666644322110 00
Q ss_pred CcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC-CCCC
Q 007979 364 YLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP-PLGK 442 (582)
Q Consensus 364 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~l~~ 442 (582)
...+..+++|++|++++|.+..+.+..+..+++|+.|++++|......+ .+..
T Consensus 124 --------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 124 --------------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp --------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 0123345678888888888887745578888999999999987665544 3788
Q ss_pred CCCcceeeccccc
Q 007979 443 LPSLEKLYISDMK 455 (582)
Q Consensus 443 l~~L~~L~L~~~~ 455 (582)
+++|+.|++++|+
T Consensus 178 l~~L~~L~l~~N~ 190 (251)
T 3m19_A 178 LGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEeeCCc
Confidence 8999999999887
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=3.2e-15 Score=142.85 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEe
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRV 460 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 460 (582)
.+++|+.|++++|.+... +. +..+++|+.|++++|... .++.+..+++|+.|++++|+ +...
T Consensus 154 ~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l~~n~-i~~~ 215 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE-CLNK 215 (291)
T ss_dssp GCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEEEEE-EECC
T ss_pred cCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC-CChhhccCCCCCEEECcCCc-ccCC
Confidence 345667777777776665 33 677788888888887543 35667778888888888776 4433
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=8e-17 Score=159.51 Aligned_cols=265 Identities=13% Similarity=0.060 Sum_probs=162.1
Q ss_pred EEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccC-CCCEEecCCCCCccccchhhhcc-
Q 007979 178 LFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLV-HLRYLNLSSVTLIRKLPETLCEL- 255 (582)
Q Consensus 178 L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L- 255 (582)
+.++.|.+.. .+|.++...++|++|+|++|.+.+ .....+...+..++ +|++|++++|.+....+..+..+
T Consensus 3 ~~ls~n~~~~------~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 75 (362)
T 3goz_A 3 YKLTLHPGSN------PVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75 (362)
T ss_dssp EECCCCTTCC------HHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred cccccccchH------HHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence 4566665432 367766777779999999965543 12222336677888 89999999999545556677775
Q ss_pred ----CCccEEecCCCcCcccccccc----ccC-CCCceeecCCccCCCcCCccC----CC-CCCCCccCeeeecCCCCcC
Q 007979 256 ----YNLEKLDISYCINLKALPQGI----GKL-INMKHLLNERTDSLGHMPAGI----AR-LPSLRTLDEFHVSGGEGVD 321 (582)
Q Consensus 256 ----~~L~~L~L~~~~~l~~lp~~i----~~l-~~L~~L~l~~~~~~~~~p~~i----~~-l~~L~~L~~~~~~~~~~~~ 321 (582)
++|++|++++|......+..+ ..+ ++|++|++++|......+..+ .. .++|++|++.++....
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--- 152 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--- 152 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG---
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH---
Confidence 999999999998433444433 344 899999999986433222222 22 1345555432221100
Q ss_pred CCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCC-CCc
Q 007979 322 GRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPL-NLK 400 (582)
Q Consensus 322 ~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~ 400 (582)
.....+...+...+ +|+
T Consensus 153 --------------------------------------------------------------~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 153 --------------------------------------------------------------KSSDELIQILAAIPANVN 170 (362)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHTSCTTCC
T ss_pred --------------------------------------------------------------HHHHHHHHHHhcCCcccc
Confidence 01233344444444 899
Q ss_pred EEEEeeEeCCCcCCchhh----cC-cCCcEEEEeCCCCCCc----CCC-CCC-CCCcceeecccccCceEeCccccCCCC
Q 007979 401 ELFIGSYGGNTVSPSWMM----SL-TNLRSLNLHLCENCEQ----LPP-LGK-LPSLEKLYISDMKSVKRVGNEILGIES 469 (582)
Q Consensus 401 ~L~l~~~~~~~~~p~~~~----~l-~~L~~L~l~~~~~~~~----l~~-l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~ 469 (582)
+|++++|.+....+..+. .+ ++|+.|++++|..... ++. +.. .++|++|+|++|. ++..+...+..
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~-- 247 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL-- 247 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH--
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH--
Confidence 999999988766454444 44 5999999999975542 222 333 4589999999987 65554322111
Q ss_pred CCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCcccccccceeccccc
Q 007979 470 DHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCP 528 (582)
Q Consensus 470 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~ 528 (582)
....+++|++|++++| .+..+...........+..+++|+.|++++++
T Consensus 248 ----------~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 ----------LKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp ----------TTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ----------HHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 0236788999999888 33322211000000013377888888888854
No 97
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.56 E-value=5.7e-16 Score=161.46 Aligned_cols=100 Identities=21% Similarity=0.370 Sum_probs=83.5
Q ss_pred CCCchHHHHhhhccCChhhhhHhh-----------hccCCCCCCccCHHHHHHHHHHc--CCccCCC-cccHHHHHHHHH
Q 007979 25 EKGVLSPLLLSYNDLPSRVKRCFS-----------YCAVFPKDFNIMKEKLISMWMAQ--GYFSAEQ-DEEMDIIGEEYF 90 (582)
Q Consensus 25 ~~~i~~~L~lSY~~L~~~~k~cFl-----------~~a~Fp~~~~i~~~~Li~~w~ae--g~i~~~~-~~~~~~~~~~~~ 90 (582)
.++|.++|++||++||.++|.||+ |||+||+|+.|+ +++|+|+ ||+.... +..++++++ |+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 356999999999999999999999 999999999998 8999999 9998776 567888888 99
Q ss_pred HHHHhccCccccccCCCCCeeEEEeCHHHHHHHHHhhhccce
Q 007979 91 NILATRSFFQEFKRDHDNLIVACKMHDIVHDFAQFVSQNECS 132 (582)
Q Consensus 91 ~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~a~~i~~~~~~ 132 (582)
++|+++||++....+ ...+|+|||++|++|++++.+++.
T Consensus 435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999987643 335799999999999999987654
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=1.7e-14 Score=134.83 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=135.7
Q ss_pred CCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 232 VHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
...++++++++. +..+|..+. ++|++|++++|......|..++.+++|++|++++|......|..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456889999988 888997765 68999999999854445567899999999999999766555556788888888875
Q ss_pred eeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHh
Q 007979 312 FHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLE 391 (582)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 391 (582)
.++.... ++ ..
T Consensus 91 ~~n~l~~-----------------------------~~----------------------------------------~~ 101 (251)
T 3m19_A 91 ANNQLAS-----------------------------LP----------------------------------------LG 101 (251)
T ss_dssp TTSCCCC-----------------------------CC----------------------------------------TT
T ss_pred CCCcccc-----------------------------cC----------------------------------------hh
Confidence 4332111 00 11
Q ss_pred hCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC-CCCCCCCcceeecccccCceEeCccccCCCCC
Q 007979 392 ALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP-PLGKLPSLEKLYISDMKSVKRVGNEILGIESD 470 (582)
Q Consensus 392 ~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 470 (582)
.+..+++|++|++++|.+..+.+..+..+++|+.|++++|......+ .++.+++|++|+|++|. ++.++...+
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~----- 175 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF----- 175 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-----
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH-----
Confidence 23456789999999999988855667899999999999997766555 38899999999999997 666665432
Q ss_pred CCCCCCCCcccccCcccccccccccc
Q 007979 471 HHDSSSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 471 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
..+++|+.|++++++
T Consensus 176 -----------~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 176 -----------DRLGKLQTITLFGNQ 190 (251)
T ss_dssp -----------TTCTTCCEEECCSCC
T ss_pred -----------hCCCCCCEEEeeCCc
Confidence 378999999999874
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.6e-14 Score=151.45 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=44.5
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeC
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVG 461 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~ 461 (582)
..+++|+.|+|++|.+... +. +..+++|+.|+|++|.... ++.+..+++|+.|+|++|+ +...|
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp GSCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE-EECCC
T ss_pred cccCCCCEEECcCCcCCCc-hh-hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc-CcCCc
Confidence 3456777777777777666 33 7778888888888875443 5667778888888888776 44333
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.9e-14 Score=137.50 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=63.5
Q ss_pred CCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCC
Q 007979 395 PPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDS 474 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 474 (582)
.+++|+.|++++|.+..+ ..+..+++|+.|++++|......+ +..+++|+.|++++|. ++.++.
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~------------ 195 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA------------ 195 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG------------
T ss_pred CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh------------
Confidence 345677888888877765 568899999999999997655444 8999999999999997 666543
Q ss_pred CCCCcccccCcccccccccccc
Q 007979 475 SSSSSVIIAFPKLQSLFIEDLP 496 (582)
Q Consensus 475 ~~~~~~~~~~~~L~~L~l~~~~ 496 (582)
...+++|+.|++++++
T Consensus 196 ------l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 ------LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------GTTCTTCSEEEEEEEE
T ss_pred ------hccCCCCCEEECcCCc
Confidence 3378999999999883
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=4.3e-14 Score=126.70 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=114.9
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
...++++.+.++.+..++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+ ..|..+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~-------~~-~l~~l~~L~~L~l~~n~l~~-----~~~~~l 108 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN-------YN-PISGLSNLERLRIMGKDVTS-----DKIPNL 108 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC-------CG-GGTTCTTCCEEEEECTTCBG-----GGSCCC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc-------ch-hhhcCCCCCEEEeECCccCc-----ccChhh
Confidence 456788888888777766 68888999999999886432 22 27788999999999854432 356778
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
+.+++|++|++++|.+....|..++.+++|++|++++|..+..+| .+..+++|++|++++|.. ..++ .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQ 185 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCE
Confidence 888999999999998555677888899999999999987677777 588889999999988854 4454 6777888888
Q ss_pred cCeeeec
Q 007979 309 LDEFHVS 315 (582)
Q Consensus 309 L~~~~~~ 315 (582)
|++.++.
T Consensus 186 L~l~~N~ 192 (197)
T 4ezg_A 186 LYAFSQT 192 (197)
T ss_dssp EEECBC-
T ss_pred EEeeCcc
Confidence 8766543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=3.8e-14 Score=148.50 Aligned_cols=174 Identities=19% Similarity=0.259 Sum_probs=120.2
Q ss_pred ccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCC
Q 007979 228 IEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLR 307 (582)
Q Consensus 228 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 307 (582)
+..|.+|++|++++|. +..+| .+..+++|+.|+|++|. +..+|. +..+++|++|++++|.. ..+| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence 4567777777777777 66665 57777777777777776 555555 67777777777777743 3333 455666666
Q ss_pred ccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHH
Q 007979 308 TLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQ 387 (582)
Q Consensus 308 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 387 (582)
.|++..+....
T Consensus 113 ~L~Ls~N~l~~--------------------------------------------------------------------- 123 (605)
T 1m9s_A 113 SLSLEHNGISD--------------------------------------------------------------------- 123 (605)
T ss_dssp EEECTTSCCCC---------------------------------------------------------------------
T ss_pred EEEecCCCCCC---------------------------------------------------------------------
Confidence 66543221110
Q ss_pred HHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCC
Q 007979 388 LLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGI 467 (582)
Q Consensus 388 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 467 (582)
+..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|......| +..+++|+.|+|++|. +..++.
T Consensus 124 --l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~----- 192 (605)
T 1m9s_A 124 --INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA----- 192 (605)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG-----
T ss_pred --CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH-----
Confidence 00123456788888888887775 568899999999999997666555 8999999999999997 655532
Q ss_pred CCCCCCCCCCCcccccCccccccccccccccccc
Q 007979 468 ESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEW 501 (582)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l 501 (582)
+..+++|+.|+|++| .+...
T Consensus 193 -------------l~~l~~L~~L~L~~N-~l~~~ 212 (605)
T 1m9s_A 193 -------------LAGLKNLDVLELFSQ-ECLNK 212 (605)
T ss_dssp -------------GTTCTTCSEEECCSE-EEECC
T ss_pred -------------HccCCCCCEEEccCC-cCcCC
Confidence 347899999999988 34443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.4e-14 Score=136.15 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=115.7
Q ss_pred cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCC
Q 007979 201 KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLI 280 (582)
Q Consensus 201 ~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~ 280 (582)
.+..+..++++++ .+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..++
T Consensus 17 ~l~~l~~l~l~~~------~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQ------SVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCS------CTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhcCC------Cccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 3445566666662 444554 56777788888888777 66676 67777888888888776 566665 77778
Q ss_pred CCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccC
Q 007979 281 NMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLD 360 (582)
Q Consensus 281 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~ 360 (582)
+|++|++++|.. ..+|... . ++|+.|++.++....
T Consensus 86 ~L~~L~L~~N~l-~~l~~~~-~-~~L~~L~L~~N~l~~------------------------------------------ 120 (263)
T 1xeu_A 86 KLEELSVNRNRL-KNLNGIP-S-ACLSRLFLDNNELRD------------------------------------------ 120 (263)
T ss_dssp SCCEEECCSSCC-SCCTTCC-C-SSCCEEECCSSCCSB------------------------------------------
T ss_pred CCCEEECCCCcc-CCcCccc-c-CcccEEEccCCccCC------------------------------------------
Confidence 888888877743 3343321 1 455555433221110
Q ss_pred CCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCC
Q 007979 361 KKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPL 440 (582)
Q Consensus 361 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l 440 (582)
...+..+++|+.|++++|.+..+ + .+..+++|+.|++++|...+. +.+
T Consensus 121 -----------------------------~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 121 -----------------------------TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp -----------------------------SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred -----------------------------ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHh
Confidence 01234567788888888888776 4 688899999999999976655 778
Q ss_pred CCCCCcceeecccccCceEeC
Q 007979 441 GKLPSLEKLYISDMKSVKRVG 461 (582)
Q Consensus 441 ~~l~~L~~L~L~~~~~l~~~~ 461 (582)
..+++|+.|++++|. +...|
T Consensus 169 ~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp TTCCCCCEEEEEEEE-EECCC
T ss_pred ccCCCCCEEeCCCCc-ccCCc
Confidence 899999999999887 54444
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=3.5e-14 Score=127.31 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=28.5
Q ss_pred cccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCc
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~ 290 (582)
.+..+++|++|++++|.+....|..++++++|++|++++|......|..++.+++|++|++++|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 3444444444444444422233444444444444444444422233444444444444444444
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=9.5e-14 Score=143.81 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=58.7
Q ss_pred ceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCc
Q 007979 204 SLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMK 283 (582)
Q Consensus 204 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~ 283 (582)
+|++|++++| .+..+|..+. ++|++|++++|. +..+| ..+++|++|++++|. +..+|. +.. +|+
T Consensus 60 ~L~~L~Ls~n------~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRL------NLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSS------CCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCC
T ss_pred CccEEEeCCC------CCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCC
Confidence 6777777773 4445666553 677788887777 56777 456777788887776 555776 544 777
Q ss_pred eeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 284 HLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 284 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
+|++++|.. ..+|. .+++|+.|++.
T Consensus 124 ~L~Ls~N~l-~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 124 HLDVDNNQL-TMLPE---LPALLEYINAD 148 (571)
T ss_dssp EEECCSSCC-SCCCC---CCTTCCEEECC
T ss_pred EEECCCCcC-CCCCC---cCccccEEeCC
Confidence 777777743 33555 45666666544
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=2e-13 Score=123.53 Aligned_cols=126 Identities=28% Similarity=0.346 Sum_probs=76.4
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc-cccccCCCCEEecCCCCCccccch
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR-NIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
.++|+.|++++|.+... .+..|..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.
T Consensus 27 ~~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL------PNGVFDELTSLTQLYLGGN------KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCcEEEcCCCccCcC------ChhhhcccccCcEEECCCC------ccCccChhhcCCCCCcCEEECCCCc-CCccCH
Confidence 35677777777765421 3333667777777777773 3344443 35677777777777777 445543
Q ss_pred -hhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCccCCCCCCCCccCe
Q 007979 251 -TLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDE 311 (582)
Q Consensus 251 -~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 311 (582)
.+.++++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++
T Consensus 94 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 35777777777777776 445544 3567777777777776443222222455555555543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=3.7e-13 Score=139.41 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=28.7
Q ss_pred CCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC
Q 007979 398 NLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP 438 (582)
Q Consensus 398 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~ 438 (582)
.|+.|++++|.+..+ |.++..+++|+.|+|++|...+.+|
T Consensus 208 ~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 208 TEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 457777777777766 7777777888888888777665443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=3.9e-13 Score=123.47 Aligned_cols=140 Identities=24% Similarity=0.338 Sum_probs=106.6
Q ss_pred ecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEE
Q 007979 159 IGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYL 237 (582)
Q Consensus 159 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L 237 (582)
.+....+|..+. ++|+.|++++|.+... .|..|..+++|++|+|++| .+..+| ..+..+++|++|
T Consensus 28 ~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~N------~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 28 SKRHASVPAGIP--TNAQILYLHDNQITKL------EPGVFDSLINLKELYLGSN------QLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TSCCSSCCSCCC--TTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCccCCCCC--CCCCEEEcCCCccCcc------CHHHhhCccCCcEEECCCC------CCCCcChhhcccCCCcCEE
Confidence 334455565443 7899999999986542 4555888999999999984 455566 446889999999
Q ss_pred ecCCCCCccccch-hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeee
Q 007979 238 NLSSVTLIRKLPE-TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 238 ~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 314 (582)
+|++|. +..+|. .+..+++|++|++++|. +..+|..+..+++|++|++++|......+..+..+++|+.|++.++
T Consensus 94 ~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 94 DLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999998 566654 47889999999999988 7789988999999999999998554333345778888888876543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=3e-13 Score=123.33 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=102.5
Q ss_pred cCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEEe
Q 007979 160 GLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLN 238 (582)
Q Consensus 160 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~ 238 (582)
+....+|..+. +.++.|++++|.+.. +.+..|..+++|++|+|++|.+ ..+ |..+..+++|++|+
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~------i~~~~~~~l~~L~~L~Ls~N~i------~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQI------SELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCE------ECTTSSTTCTTCCEEECCSSCC------CEECTTTTTTCSSCCEEE
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCC------cCHhHhhCCCCCCEEECCCCcC------CCcCHHHhhCCcCCCEEE
Confidence 33445555443 678999999887543 2344478888999999998543 334 67788899999999
Q ss_pred cCCCCCccccchh-hhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeee
Q 007979 239 LSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 239 L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 314 (582)
|++|. +..+|.. +.++++|++|+|++|......|..+..+++|++|++++|......+..+..+++|++|++.++
T Consensus 87 Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 87 LYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 99988 6677654 688999999999998844444667888999999999988655444455777888888876543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1e-12 Score=118.83 Aligned_cols=64 Identities=22% Similarity=0.051 Sum_probs=46.7
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCcc
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNE 463 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 463 (582)
..+++|++|++++|.+..+.+..+..+++|+.|++++|.. .+.+++|+.|+++.|..-+.+|..
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB------CCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe------ecCCCCHHHHHHHHHhCCceeecc
Confidence 3456777888888877776455577888999999998843 345678889988888755566654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=4.5e-15 Score=154.64 Aligned_cols=200 Identities=16% Similarity=0.152 Sum_probs=124.0
Q ss_pred cCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcc--------ccccccccccccccccCCCCEEe-cC
Q 007979 170 CRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSA--------TLCSSILDIPRNIEKLVHLRYLN-LS 240 (582)
Q Consensus 170 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~--------~~~~~l~~lp~~i~~L~~L~~L~-L~ 240 (582)
..+++|+.|++++|.+ . .+|..++.+++|+.|++++|.. ..+......|..++.+++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~L------~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS------T-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHH------H-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhhH------H-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 4566777777777763 2 2566677888888888765320 00012234456667777777776 44
Q ss_pred CCCCccccch------hhhc--cCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 241 SVTLIRKLPE------TLCE--LYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 241 ~~~~~~~lp~------~i~~--L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
.+. +..++. .+.. ...|++|++++|. +..+|. ++.+++|+.|++++|.. ..+|..++.+++|+.|++.
T Consensus 419 ~n~-~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 AAY-LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECC
T ss_pred hcc-cchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECC
Confidence 443 333321 1111 1257777777776 666776 77777777777777743 4667777777777777644
Q ss_pred eecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhh
Q 007979 313 HVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEA 392 (582)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 392 (582)
++.... ++ .
T Consensus 495 ~N~l~~----------------------------------------------------------------------lp-~ 503 (567)
T 1dce_A 495 DNALEN----------------------------------------------------------------------VD-G 503 (567)
T ss_dssp SSCCCC----------------------------------------------------------------------CG-G
T ss_pred CCCCCC----------------------------------------------------------------------Cc-c
Confidence 322110 01 2
Q ss_pred CCCCCCCcEEEEeeEeCCCcC-CchhhcCcCCcEEEEeCCCCCCcCCCCC----CCCCcceeec
Q 007979 393 LQPPLNLKELFIGSYGGNTVS-PSWMMSLTNLRSLNLHLCENCEQLPPLG----KLPSLEKLYI 451 (582)
Q Consensus 393 l~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~l~----~l~~L~~L~L 451 (582)
+..+++|+.|++++|.+.... |..+..+++|+.|++++|...+..|... .+|+|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 345667888888888887775 7788888888888888887666555432 3778887753
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=119.32 Aligned_cols=148 Identities=18% Similarity=0.092 Sum_probs=107.6
Q ss_pred EEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccC
Q 007979 154 HLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLV 232 (582)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~ 232 (582)
.+...++....+|..+ .+.++.|++++|.+.... .+..|..+++|++|+|++|. +..++ ..++.++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLE-----ATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEEC-----CCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccC-----chhhhccCCCCCEEECCCCc------CCEECHHHhCCCC
Confidence 4445555555666554 345688999998864321 12337788999999999844 44454 4788899
Q ss_pred CCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCee
Q 007979 233 HLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEF 312 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 312 (582)
+|++|++++|.+.+..|..+.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|++|++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 99999999998444444558899999999999988444446778889999999999987666667778888888888765
Q ss_pred ee
Q 007979 313 HV 314 (582)
Q Consensus 313 ~~ 314 (582)
++
T Consensus 162 ~N 163 (220)
T 2v70_A 162 AN 163 (220)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.7e-13 Score=115.61 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchh
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPET 251 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 251 (582)
.++|+.|++++|.+.... +|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.+.+|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~-----i~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK-----IEGLTAEFVNLEFLSLINVG------LISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTB-----CSSCCGGGGGCCEEEEESSC------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhh-----HHHHHHhCCCCCEEeCcCCC------CCCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 466777777777754111 33335677778888887743 3333 56677778888888887744447766
Q ss_pred hhccCCccEEecCCCcCccccc--cccccCCCCceeecCCccCCCcCCc----cCCCCCCCCccCeeeecCC
Q 007979 252 LCELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTDSLGHMPA----GIARLPSLRTLDEFHVSGG 317 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~~ 317 (582)
+.++++|++|++++|. +..+| ..+..+++|++|++++|.. ...|. .+..+++|+.|++..+...
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7778888888888876 56555 5677778888888877754 34443 5677777887777665443
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=3.5e-12 Score=116.23 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=42.8
Q ss_pred ccccccccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCcc
Q 007979 220 SILDIPRNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTD 291 (582)
Q Consensus 220 ~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 291 (582)
.+..+|..+. .+|++|++++|. +..+| ..+..+++|++|+|++|......|..+..+++|++|++++|.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4555665443 567777777776 44444 356677777777777766333335666677777777776663
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4.1e-13 Score=114.39 Aligned_cols=126 Identities=25% Similarity=0.253 Sum_probs=89.2
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchh
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPET 251 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 251 (582)
.++++.|++++|.+.... +|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.+.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK-----LEGLTDEFEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTB-----CCSCCTTCTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChhH-----HHHHHhhcCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 467888888888764211 33346778888888888844 3334 56778888888888888844447777
Q ss_pred hhccCCccEEecCCCcCccccc--cccccCCCCceeecCCccCCCcCCc----cCCCCCCCCccCe
Q 007979 252 LCELYNLEKLDISYCINLKALP--QGIGKLINMKHLLNERTDSLGHMPA----GIARLPSLRTLDE 311 (582)
Q Consensus 252 i~~L~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 311 (582)
++++++|++|++++|. +..+| ..++.+++|++|++++|.. ...|. .+..+++|+.|++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 7778888888888887 55544 6778888888888888854 33443 4667777777764
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.7e-12 Score=113.01 Aligned_cols=134 Identities=22% Similarity=0.173 Sum_probs=111.2
Q ss_pred CcceeEEEEEecCCC--cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGA--SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
+..++.+.+.++... .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+ .+|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~-----~~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFG-----GLDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCS-----CCCH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCch-----HHHH
Confidence 577888999888876 7788889999999999999986542 237899999999999954432 2777
Q ss_pred cccccCCCCEEecCCCCCccccc--hhhhccCCccEEecCCCcCcccccc----ccccCCCCceeecCCccCCCcCCc
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLP--ETLCELYNLEKLDISYCINLKALPQ----GIGKLINMKHLLNERTDSLGHMPA 298 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~ 298 (582)
.++.+++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++.+|. ...+|.
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 77889999999999998 77766 689999999999999998 667776 78999999999999985 345554
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.1e-12 Score=138.96 Aligned_cols=157 Identities=22% Similarity=0.166 Sum_probs=93.1
Q ss_pred CcceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI 228 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i 228 (582)
...++++.+..+.....+........|+.+.+........ ....++..|..+..|++|+|++ + .+..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n--~~~~~~~~~~~l~~L~~L~Ls~-----n-~l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN--RMVMPKDSKYDDQLWHALDLSN-----L-QIFNISANI 243 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTT-----S-CCSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc--ceecChhhhccCCCCcEEECCC-----C-CCCCCChhh
Confidence 3456677776665554444443333444433333221111 1123567788999999999998 3 566788888
Q ss_pred cccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCc
Q 007979 229 EKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRT 308 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 308 (582)
..+++|++|+|++|. +..+|..|++|++|++|+|++|. +..+|..++.|++|++|++++|. +..+|.+++.+++|++
T Consensus 244 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCC
T ss_pred cCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccE
Confidence 899999999999998 66899999999999999999998 66889999999999999999984 4688988999999999
Q ss_pred cCeeeecC
Q 007979 309 LDEFHVSG 316 (582)
Q Consensus 309 L~~~~~~~ 316 (582)
|++.++..
T Consensus 321 L~L~~N~l 328 (727)
T 4b8c_D 321 LGVEGNPL 328 (727)
T ss_dssp EECTTSCC
T ss_pred EeCCCCcc
Confidence 98765543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=7.6e-12 Score=114.81 Aligned_cols=133 Identities=22% Similarity=0.322 Sum_probs=111.5
Q ss_pred CCCcceeEEEEEecCCCcc-cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASF-PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP 225 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp 225 (582)
.++..++.+.+.++.+..+ +..+..+++|+.|++++|.+.. +.+..|..+++|++|+|++| .+..+|
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~N------~l~~l~ 104 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGTN------QLTVLP 104 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS------CCCCCC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCCC------cCCccC
Confidence 4568899999999888766 5668899999999999998643 24455789999999999994 455565
Q ss_pred c-cccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCC
Q 007979 226 R-NIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSL 293 (582)
Q Consensus 226 ~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~ 293 (582)
. .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|++.+|...
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 4 46899999999999999 78999999999999999999997 66666 45789999999999998644
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=5e-12 Score=115.19 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=109.3
Q ss_pred CCCcceeEEEEEecCCCcccc--cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc
Q 007979 147 SLDEKVCHLMLVIGLGASFPV--STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI 224 (582)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l 224 (582)
.++..++.+.+..+.+..++. .+..+++|+.|++++|.+.. +.+..|.++++|++|+|++|. +..+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------i~~~~~~~l~~L~~L~Ls~N~------l~~~ 96 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------IEEGAFEGASGVNEILLTSNR------LENV 96 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCSSC------CCCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE------ECHHHhCCCCCCCEEECCCCc------cCcc
Confidence 345667889998888877633 47899999999999998643 244458999999999999954 4445
Q ss_pred c-ccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCC
Q 007979 225 P-RNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSL 293 (582)
Q Consensus 225 p-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 293 (582)
| ..++.+++|++|++++|.+.+..|..+.++++|++|+|++|......|..+..+++|++|++++|...
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4 45889999999999999955555788999999999999999844444788999999999999998644
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=2.6e-12 Score=126.77 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=36.2
Q ss_pred CCCCCcEEEEeeEeCCCcCCch-h---hcCcCCcEEEEeCCCCCCcCCC--CCCCCC--cceeeccccc
Q 007979 395 PPLNLKELFIGSYGGNTVSPSW-M---MSLTNLRSLNLHLCENCEQLPP--LGKLPS--LEKLYISDMK 455 (582)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~p~~-~---~~l~~L~~L~l~~~~~~~~l~~--l~~l~~--L~~L~L~~~~ 455 (582)
.+++|+.|+|++|.+..+ |.. + ..+++|+.|+|++|.... +|. +..++. |+.|+|.+|+
T Consensus 134 ~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTEECCSSC
T ss_pred CcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceEEecCCC
Confidence 445666677777766666 443 3 467888888888875443 332 445555 3677777776
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=9.6e-12 Score=116.66 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=93.0
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIE 229 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~ 229 (582)
..++.+.+.++....++ .+..+++|+.|++++|.+... .+ +..+++|++|++++|. +..+|....
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~------~~--l~~l~~L~~L~L~~N~------l~~l~~~~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL------SP--LKDLTKLEELSVNRNR------LKNLNGIPS 105 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC------GG--GTTCSSCCEEECCSSC------CSCCTTCCC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC------hh--hccCCCCCEEECCCCc------cCCcCcccc
Confidence 44566666666555555 566777777777777775432 22 6777777777777743 334443222
Q ss_pred ccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCcc
Q 007979 230 KLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTL 309 (582)
Q Consensus 230 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 309 (582)
.+|++|++++|. +..+| .++.+++|++|++++|. +..+| .++.+++|++|++++|.... + ..+..+++|+.|
T Consensus 106 --~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~-~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 106 --ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITN-T-GGLTRLKKVNWI 177 (263)
T ss_dssp --SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCB-C-TTSTTCCCCCEE
T ss_pred --CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcc-h-HHhccCCCCCEE
Confidence 777777777777 55565 57777777777777776 55565 47777777777777775433 3 456667777777
Q ss_pred Ceeeec
Q 007979 310 DEFHVS 315 (582)
Q Consensus 310 ~~~~~~ 315 (582)
++.++.
T Consensus 178 ~l~~N~ 183 (263)
T 1xeu_A 178 DLTGQK 183 (263)
T ss_dssp EEEEEE
T ss_pred eCCCCc
Confidence 766554
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.3e-12 Score=113.11 Aligned_cols=130 Identities=20% Similarity=0.215 Sum_probs=101.4
Q ss_pred cccCCCCceEEEEeCCcCCCCchhhhhHHHHHccC-CceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcc
Q 007979 168 STCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKL-TSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR 246 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~ 246 (582)
.+.++++|+.|++++|.+.. ++. +..+ ++|++|++++|.+. .+ ..++.+++|++|++++|. +.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-------i~~-~~~~~~~L~~L~Ls~N~l~------~~-~~l~~l~~L~~L~Ls~N~-l~ 77 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-------IEN-LGATLDQFDAIDFSDNEIR------KL-DGFPLLRRLKTLLVNNNR-IC 77 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-------CCC-GGGGTTCCSEEECCSSCCC------EE-CCCCCCSSCCEEECCSSC-CC
T ss_pred hcCCcCCceEEEeeCCCCch-------hHH-hhhcCCCCCEEECCCCCCC------cc-cccccCCCCCEEECCCCc-cc
Confidence 45678899999999998653 233 3444 49999999995543 44 568889999999999999 67
Q ss_pred ccchh-hhccCCccEEecCCCcCcccccc--ccccCCCCceeecCCccCCCcCCcc----CCCCCCCCccCeeeec
Q 007979 247 KLPET-LCELYNLEKLDISYCINLKALPQ--GIGKLINMKHLLNERTDSLGHMPAG----IARLPSLRTLDEFHVS 315 (582)
Q Consensus 247 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 315 (582)
.+|.. ++.+++|++|++++|. +..+|. .++.+++|++|++++|.. ..+|.. +..+++|+.|++..+.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77755 4899999999999997 677886 788999999999999854 456654 7778888888876553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=4.1e-12 Score=108.10 Aligned_cols=126 Identities=24% Similarity=0.201 Sum_probs=104.4
Q ss_pred CcceeEEEEEecCCC--cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGA--SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR 226 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~ 226 (582)
+..++++.+.++... .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+ .+|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~-----~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSG-----GLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCS-----CTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccc-----hHHH
Confidence 567888888888776 7788889999999999999987542 337899999999999954432 2777
Q ss_pred cccccCCCCEEecCCCCCccccc--hhhhccCCccEEecCCCcCcccccc----ccccCCCCceeecCC
Q 007979 227 NIEKLVHLRYLNLSSVTLIRKLP--ETLCELYNLEKLDISYCINLKALPQ----GIGKLINMKHLLNER 289 (582)
Q Consensus 227 ~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~l~~L~~L~l~~ 289 (582)
.++.+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 78889999999999999 66654 789999999999999997 666665 688999999998863
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=4.3e-12 Score=125.24 Aligned_cols=126 Identities=23% Similarity=0.234 Sum_probs=61.7
Q ss_pred CceEEEEeCCcCCCCchhhhhHHHHHc-cCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccc-h
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLKELFG-KLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLP-E 250 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~ 250 (582)
.++.|++++|.+... .+..|. .+++|++|+|++| .+..++ ..+..+++|++|+|++|. +..+| .
T Consensus 40 ~l~~L~Ls~N~l~~l------~~~~~~~~l~~L~~L~L~~N------~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 106 (361)
T 2xot_A 40 YTALLDLSHNNLSRL------RAEWTPTRLTNLHSLLLSHN------HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEF 106 (361)
T ss_dssp TCSEEECCSSCCCEE------CTTSSSSCCTTCCEEECCSS------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred CCCEEECCCCCCCcc------ChhhhhhcccccCEEECCCC------cCCccChhhccCCCCCCEEECCCCc-CCcCCHH
Confidence 355566666554321 222233 5556666666553 222333 345555666666666655 33333 2
Q ss_pred hhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccC----CCCCCCCccCeee
Q 007979 251 TLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGI----ARLPSLRTLDEFH 313 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L~~~~ 313 (582)
.|.++++|++|+|++|......|..+..+++|++|++++|.. ..+|..+ ..+++|+.|++.+
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCS
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCC
Confidence 355566666666666553222344555566666666655532 3344332 3455555555443
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=4.1e-11 Score=116.64 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=152.8
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHcc-CCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc-
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFGK-LTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP- 249 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp- 249 (582)
+.+++.|.+.++- ....+.. +.. +++|++|||++|.+... ..+ -+.++.++++.+..+. +|
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~i~~~----~~~--~~~~~~~~~~~~~~~~----I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAEIKMY----SGK--AGTYPNGKFYIYMANF----VPA 86 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEEECCE----EES--SSSSGGGCCEEECTTE----ECT
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcceeEEe----cCc--cccccccccccccccc----cCH
Confidence 5678888888753 1111222 333 88899999998554310 111 1122224455554442 33
Q ss_pred hhhhc--------cCCccEEecCCCcCcccccc-ccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCc
Q 007979 250 ETLCE--------LYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGV 320 (582)
Q Consensus 250 ~~i~~--------L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~ 320 (582)
..|.+ +.+|+.|++.+ . +..++. .+..+++|+.+++.++......+..+..+.++..+...........
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 34566 88888888887 4 566654 4778888888888877544333344555444444432110000000
Q ss_pred CCCCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCc
Q 007979 321 DGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLK 400 (582)
Q Consensus 321 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 400 (582)
.......+..+..++. ..... .... ........-..+.++.
T Consensus 165 ~~i~~~~f~~~~~L~~--~i~~~---~~~~----------------------------------l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLET--TIQVG---AMGK----------------------------------LEDEIMKAGLQPRDIN 205 (329)
T ss_dssp TTTTTSCEEESCCCEE--EEEEC---TTCC----------------------------------HHHHHHHTTCCGGGCS
T ss_pred ccccccccccccccce--eEEec---CCCc----------------------------------HHHHHhhcccCccccc
Confidence 0000111111111110 01110 0111 1122222222345566
Q ss_pred EEEEeeEeCCCcCCchh-hcCcCCcEEEEeCCCCCCcCCC--CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCC
Q 007979 401 ELFIGSYGGNTVSPSWM-MSLTNLRSLNLHLCENCEQLPP--LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSS 477 (582)
Q Consensus 401 ~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 477 (582)
.+.+.+.-.... ...+ ..+++|+.|++.+|... .++. +.++++|+.+++.++ ++.++...|.
T Consensus 206 ~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~----------- 270 (329)
T 3sb4_A 206 FLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFS----------- 270 (329)
T ss_dssp EEEEEECCCHHH-HHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTT-----------
T ss_pred eEEEeeeecHHH-HHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc--cceehHHHhh-----------
Confidence 666665422211 1111 24677888888776533 3333 777788888888775 7777766543
Q ss_pred CcccccCcccc-cccccccccccccccCcccCCCCCCcccccccceecccccccccCCc-CCCCCCCcceEE
Q 007979 478 SSVIIAFPKLQ-SLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPD-HIHQTTTLKGLS 547 (582)
Q Consensus 478 ~~~~~~~~~L~-~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~-~~~~l~~L~~L~ 547 (582)
++++|+ .+.+.+ +++.++...+ ..+++|+.|++.+ +.++.++. .+.++++|+.++
T Consensus 271 -----~~~~L~~~l~l~~--~l~~I~~~aF-------~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 271 -----NCGRLAGTLELPA--SVTAIEFGAF-------MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -----TCTTCCEEEEECT--TCCEECTTTT-------TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred -----CChhccEEEEEcc--cceEEchhhh-------hCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 667777 777766 5666665443 3778888888766 56777764 577788888775
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3.3e-11 Score=107.18 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=52.3
Q ss_pred CceEEEEeCCcCCCCchhhhhHH-HHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhh
Q 007979 174 RMRSLFISGNMLDNSSLNGKMLK-ELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETL 252 (582)
Q Consensus 174 ~L~~L~l~~~~l~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 252 (582)
+++.|++++|.+... .+ ..|..+++|++|+|++|.+.+ ..|..++.+++|++|++++|.+.+..|..+
T Consensus 30 ~l~~L~l~~n~i~~~------~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 30 HTTELLLNDNELGRI------SSDGLFGRLPHLVKLELKRNQLTG-----IEPNAFEGASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp TCSEEECCSCCCCSB------CCSCSGGGCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred CCCEEECCCCcCCcc------CCccccccCCCCCEEECCCCCCCC-----cCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence 555555555554321 11 124555555555555532221 124455555555555555555222223335
Q ss_pred hccCCccEEecCCCcCccccccccccCCCCceeecCCcc
Q 007979 253 CELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTD 291 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~ 291 (582)
.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 555555555555555333334455555555555555553
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=8e-12 Score=134.38 Aligned_cols=121 Identities=22% Similarity=0.222 Sum_probs=97.0
Q ss_pred ccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCC
Q 007979 165 FPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~ 244 (582)
.+..+..++.|+.|++++|.+.. +|..+..+++|++|+|++| .+..+|..++.|++|++|+|++|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-------l~~~~~~l~~L~~L~Ls~N------~l~~lp~~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-------ISANIFKYDFLTRLYLNGN------SLTELPAEIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-------CCGGGGGCCSCSCCBCTTS------CCSCCCGGGGGGTTCCEEECTTSC-
T ss_pred ChhhhccCCCCcEEECCCCCCCC-------CChhhcCCCCCCEEEeeCC------cCcccChhhhCCCCCCEEeCcCCc-
Confidence 35667888999999999998642 2323558999999999983 566789999999999999999999
Q ss_pred ccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccC
Q 007979 245 IRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGI 300 (582)
Q Consensus 245 ~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i 300 (582)
+..+|..|++|++|++|+|++|. +..+|..++.|++|++|++++|.....+|..+
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66899999999999999999987 77899989999999999999997665555443
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=2.4e-11 Score=126.54 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=104.3
Q ss_pred ccccCCCCceEEE-EeCCcCCCCc---hhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCC
Q 007979 167 VSTCRIKRMRSLF-ISGNMLDNSS---LNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSV 242 (582)
Q Consensus 167 ~~~~~~~~L~~L~-l~~~~l~~~~---~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~ 242 (582)
..+..+++|+.|+ ++.|.+..-. +....+.. + ....|++|+|++| .+..+|. ++.+++|++|++++|
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l-~~~~L~~L~Ls~n------~l~~lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-M-EYADVRVLHLAHK------DLTVLCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-H-HHTTCSEEECTTS------CCSSCCC-GGGGTTCCEEECCSS
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccc-c-CccCceEEEecCC------CCCCCcC-ccccccCcEeecCcc
Confidence 3456778888887 5554321100 00000111 1 1235999999994 5566786 999999999999999
Q ss_pred CCccccchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcC-CccCCCCCCCCccCeeeecCC
Q 007979 243 TLIRKLPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHM-PAGIARLPSLRTLDEFHVSGG 317 (582)
Q Consensus 243 ~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~ 317 (582)
. +..+|..++++++|++|+|++|. +..+| .++.+++|++|++++|...... |..++.+++|+.|++.++...
T Consensus 474 ~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 474 R-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp C-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred c-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 9 77999999999999999999998 67788 7999999999999999665544 889999999999997765443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=2.3e-11 Score=108.20 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=97.0
Q ss_pred eEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc--cccccCCCCEEecCCCCCccccchhhh
Q 007979 176 RSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR--NIEKLVHLRYLNLSSVTLIRKLPETLC 253 (582)
Q Consensus 176 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~ 253 (582)
++++++++.+.. +|..+ ..+|++|++++| .+..++. .++.+++|++|++++|.+.+..|..+.
T Consensus 11 ~~l~~s~~~l~~-------ip~~~--~~~l~~L~l~~n------~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKE-------IPRDI--PLHTTELLLNDN------ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSS-------CCSCC--CTTCSEEECCSC------CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCcCc-------CccCC--CCCCCEEECCCC------cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 678888887533 22212 238999999994 4555654 389999999999999995555588899
Q ss_pred ccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeee
Q 007979 254 ELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 254 ~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 314 (582)
++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|++|++.++
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999999999999844444455889999999999999777777888899999999986544
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.4e-11 Score=106.48 Aligned_cols=127 Identities=20% Similarity=0.113 Sum_probs=104.3
Q ss_pred CcceeEEEEEecCCCcccccccCC-CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc
Q 007979 149 DEKVCHLMLVIGLGASFPVSTCRI-KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN 227 (582)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~ 227 (582)
...++.+.+.++....++. +..+ ++|+.|++++|.+.. + ..|..+++|++|++++| .+..+|..
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-------~-~~l~~l~~L~~L~Ls~N------~l~~~~~~ 82 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-------L-DGFPLLRRLKTLLVNNN------RICRIGEG 82 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-------E-CCCCCCSSCCEEECCSS------CCCEECSC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-------c-cccccCCCCCEEECCCC------cccccCcc
Confidence 5667888888887777654 4444 499999999998653 1 23789999999999994 55566655
Q ss_pred c-cccCCCCEEecCCCCCccccch--hhhccCCccEEecCCCcCccccccc----cccCCCCceeecCCccC
Q 007979 228 I-EKLVHLRYLNLSSVTLIRKLPE--TLCELYNLEKLDISYCINLKALPQG----IGKLINMKHLLNERTDS 292 (582)
Q Consensus 228 i-~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~l~~~~~ 292 (582)
+ +.+++|++|++++|. ++.+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++++|..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5 899999999999999 788887 79999999999999998 6778875 89999999999998853
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=6.6e-11 Score=105.15 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=46.6
Q ss_pred ceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCccccc-cccccCCC
Q 007979 204 SLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALP-QGIGKLIN 281 (582)
Q Consensus 204 ~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~ 281 (582)
+|++|++++| .+..+|..+..+++|++|++++|. +..++ ..|.++++|++|+|++|. +..+| ..+..+++
T Consensus 32 ~l~~L~L~~n------~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGN------QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKS 103 (193)
T ss_dssp TCCEEECCSS------CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTT
T ss_pred CCCEEECCCC------cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCC
Confidence 4555555552 333444455555555555555555 33222 335555555555555554 33322 33455555
Q ss_pred CceeecCCccCCCcCCc-cCCCCCCCCccCe
Q 007979 282 MKHLLNERTDSLGHMPA-GIARLPSLRTLDE 311 (582)
Q Consensus 282 L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 311 (582)
|++|++++|.. ..+|. .+..+++|+.|++
T Consensus 104 L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 104 LRLLSLHGNDI-SVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CCEEECCSSCC-CBCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCC-CeeChhhhhcCccccEEEe
Confidence 55555555533 22332 2444555555443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=8.8e-11 Score=104.38 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=94.3
Q ss_pred EEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCC
Q 007979 155 LMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVH 233 (582)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~ 233 (582)
+...++....+|..+ .++|+.|++++|.+.. +|..|..+++|++|+|++|. +..++ ..+..+++
T Consensus 15 l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~-------ip~~~~~l~~L~~L~Ls~N~------i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI--PRDVTELYLDGNQFTL-------VPKELSNYKHLTLIDLSNNR------ISTLSNQSFSNMTQ 79 (193)
T ss_dssp EECTTSCCSSCCSCC--CTTCCEEECCSSCCCS-------CCGGGGGCTTCCEEECCSSC------CCCCCTTTTTTCTT
T ss_pred EEcCCCCCCcCCCCC--CCCCCEEECCCCcCch-------hHHHhhcccCCCEEECCCCc------CCEeCHhHccCCCC
Confidence 333344455566554 3689999999998753 33458999999999999954 44454 56899999
Q ss_pred CCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc-ccccCCCCceeecCCccC
Q 007979 234 LRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ-GIGKLINMKHLLNERTDS 292 (582)
Q Consensus 234 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 292 (582)
|++|+|++|.+....|..+.++++|++|+|++|. +..+|. .+..+++|++|++.+|..
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999444444579999999999999998 667775 478899999999998854
No 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.12 E-value=4e-11 Score=127.93 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=78.8
Q ss_pred CHHHHHHHhccccccccccCCCchHHHHhhhccCChhh-hhHhhhccCCCCCCccCHHHHHHHHHHcCCccCCCcccHHH
Q 007979 6 TEEEWCRILNNDLWKIEEIEKGVLSPLLLSYNDLPSRV-KRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSAEQDEEMDI 84 (582)
Q Consensus 6 ~~~~W~~~l~~~~~~~~~~~~~i~~~L~lSY~~L~~~~-k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~~ 84 (582)
+.++|+.+ ....+..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HH
Confidence 56788654 12459999999999999999 99999999999999999999999999987 13
Q ss_pred HHHHHHHHHHhccCccccccCCCCCeeEEEeCHHHHHHHH
Q 007979 85 IGEEYFNILATRSFFQEFKRDHDNLIVACKMHDIVHDFAQ 124 (582)
Q Consensus 85 ~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdl~~d~a~ 124 (582)
.++.++++|+++||++... ....|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 4788999999999999731 1246899999999653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=5.7e-13 Score=119.45 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=82.7
Q ss_pred cccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCC
Q 007979 164 SFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVT 243 (582)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~ 243 (582)
.+|..+..+++|++|++++|.+.. +| .+..+++|++|++++ + .+..+|..++.+++|++|++++|.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-------l~-~~~~l~~L~~L~l~~-----n-~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-------IS-SLSGMENLRILSLGR-----N-LIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-------CC-CHHHHTTCCEEEEEE-----E-EECSCSSHHHHHHHCSEEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-------cc-ccccCCCCCEEECCC-----C-CcccccchhhcCCcCCEEECcCCc
Confidence 334466677777777777776533 22 356677777777776 2 455666666667777777777776
Q ss_pred CccccchhhhccCCccEEecCCCcCcccccc--ccccCCCCceeecCCccCCCcCCcc----------CCCCCCCCccC
Q 007979 244 LIRKLPETLCELYNLEKLDISYCINLKALPQ--GIGKLINMKHLLNERTDSLGHMPAG----------IARLPSLRTLD 310 (582)
Q Consensus 244 ~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~ 310 (582)
+..+| .+..+++|++|++++|. +..+|. .+..+++|++|++.+|......|.. +..+++|+.|+
T Consensus 105 -l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 105 -IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 55566 57777777777777776 554443 5667777777777777543333321 44555666555
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=2.1e-10 Score=100.56 Aligned_cols=106 Identities=25% Similarity=0.393 Sum_probs=65.8
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc-cccccCCCCEEecCCCCCccccch-
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR-NIEKLVHLRYLNLSSVTLIRKLPE- 250 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~- 250 (582)
++|+.|++++|.+... .+..|..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.
T Consensus 28 ~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 94 (177)
T 2o6r_A 28 SSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSQN------QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNG 94 (177)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSS------CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred CCCcEEEeCCCcccEe------CHHHhcCcccccEEECCCC------cceEeChhHccCCCccCEEECCCCC-ccccCHH
Confidence 5677777777765321 3333566777777777763 3334443 35667777777777776 444443
Q ss_pred hhhccCCccEEecCCCcCccccccc-cccCCCCceeecCCccC
Q 007979 251 TLCELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTDS 292 (582)
Q Consensus 251 ~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 292 (582)
.+.++++|++|++++|. +..+|.. +..+++|++|++++|..
T Consensus 95 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 35677777777777765 4555544 35677777777777644
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=9.4e-11 Score=114.09 Aligned_cols=265 Identities=12% Similarity=0.088 Sum_probs=147.5
Q ss_pred CCceeEEEeCCCccccccccccccccccc-cCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccc-ccccc-
Q 007979 202 LTSLRALDIGNWSATLCSSILDIPRNIEK-LVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALP-QGIGK- 278 (582)
Q Consensus 202 l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~- 278 (582)
+.+++.|.++++- ....+ ..+.. +++|++|+|++|. +......-+.++.+..+.+..+ .+| ..+..
T Consensus 24 ~~~l~~L~l~g~i-----~~~~~-~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL-----NAEDF-RHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEE-----CHHHH-HHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTT----EECTTTTEEE
T ss_pred hCceeEEEEeccc-----cHHHH-HHHHHhhccCeEEecCcce-eEEecCcccccccccccccccc----ccCHHHhccc
Confidence 4567788887610 10111 22333 7889999999888 4411111112222444555444 233 33556
Q ss_pred -------CCCCceeecCCccCCCcCCc-cCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCC
Q 007979 279 -------LINMKHLLNERTDSLGHMPA-GIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSD 350 (582)
Q Consensus 279 -------l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~ 350 (582)
+++|+.|++.+ .+..++. .+..+++|+.+.+........ ....+....++..+. ... .
T Consensus 93 ~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i----~~~aF~~~~~l~~l~---~~~-----~ 158 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNL----LPEALADSVTAIFIP---LGS-----S 158 (329)
T ss_dssp ETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEE----CTTSSCTTTCEEEEC---TTC-----T
T ss_pred ccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcccc----chhhhcCCCceEEec---Ccc-----h
Confidence 89999999987 3344554 477888999888654332210 011222211111110 000 0
Q ss_pred hhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCc-EEEEeeEeCCCcCCchhh----cCcCCcE
Q 007979 351 VDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLK-ELFIGSYGGNTVSPSWMM----SLTNLRS 425 (582)
Q Consensus 351 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~p~~~~----~l~~L~~ 425 (582)
. ..... ..+ ....+..+.+|+ .+.+... ..+ +..+. ...+++.
T Consensus 159 -~--~~~~~---~~i-----------------------~~~~f~~~~~L~~~i~~~~~--~~l-~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 159 -D--AYRFK---NRW-----------------------EHFAFIEGEPLETTIQVGAM--GKL-EDEIMKAGLQPRDINF 206 (329)
T ss_dssp -H--HHHTS---TTT-----------------------TTSCEEESCCCEEEEEECTT--CCH-HHHHHHTTCCGGGCSE
T ss_pred -h--hhhcc---ccc-----------------------cccccccccccceeEEecCC--CcH-HHHHhhcccCccccce
Confidence 0 00000 000 001122334454 3333221 112 33222 4678888
Q ss_pred EEEeCCCCCCcCCCC-CCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccC
Q 007979 426 LNLHLCENCEQLPPL-GKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYG 504 (582)
Q Consensus 426 L~l~~~~~~~~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 504 (582)
+.+.+.-.......+ ..+++|+.+++.+|. ++.++...|. ++++|+.|.+.+. ++.++..
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~----------------~~~~L~~l~l~~n--i~~I~~~ 267 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA----------------QKKYLLKIKLPHN--LKTIGQR 267 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT----------------TCTTCCEEECCTT--CCEECTT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh----------------CCCCCCEEECCcc--cceehHH
Confidence 888876322221111 236899999999877 8899887654 7889999999874 7777765
Q ss_pred cccCCCCCCccccccc-ceecccccccccCC-cCCCCCCCcceEEEeCC
Q 007979 505 ITRTGHPFIDIMPRLS-ALAIAVCPKLKALP-DHIHQTTTLKGLSIWGC 551 (582)
Q Consensus 505 ~~~~~~~~~~~~~~L~-~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~~C 551 (582)
.+ ..+++|+ .+.+.+ .++.|+ ..+.++++|+.+++.+.
T Consensus 268 aF-------~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 268 VF-------SNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp TT-------TTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred Hh-------hCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 43 3889999 999987 788886 57889999999998653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2.9e-12 Score=114.82 Aligned_cols=109 Identities=25% Similarity=0.298 Sum_probs=87.6
Q ss_pred HHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccc
Q 007979 195 LKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQ 274 (582)
Q Consensus 195 ~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 274 (582)
+|..|..+++|++|++++| .+..+| .++.+++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n------~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~- 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN------NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE------EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-
T ss_pred hhHHHhcCCCCCEEECCCC------CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-
Confidence 4456889999999999983 555677 88899999999999998 77889888888999999999987 66677
Q ss_pred ccccCCCCceeecCCccCCCcCC--ccCCCCCCCCccCeeee
Q 007979 275 GIGKLINMKHLLNERTDSLGHMP--AGIARLPSLRTLDEFHV 314 (582)
Q Consensus 275 ~i~~l~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 314 (582)
.++.+++|++|++++|.. ..++ ..+..+++|++|++.++
T Consensus 110 ~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSC
T ss_pred ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCC
Confidence 588899999999998854 4333 35777888888876554
No 138
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.00 E-value=3.6e-10 Score=130.64 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=79.8
Q ss_pred CCchHHHHhhhccCChhhhhHhhhccCCCCCCccCHHHHHHHHHHcCCccCCCcccHHHHHHHHHHHHHhccCccccccC
Q 007979 26 KGVLSPLLLSYNDLPSRVKRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSAEQDEEMDIIGEEYFNILATRSFFQEFKRD 105 (582)
Q Consensus 26 ~~i~~~L~lSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 105 (582)
+.+..+|++||+.|++++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++++|++...
T Consensus 362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~-- 428 (1249)
T 3sfz_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNR-- 428 (1249)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEE--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEec--
Confidence 3589999999999999999999999999999999999999999665 356789999999999998654
Q ss_pred CCCCeeEEEeCHHHHHHHHHhhhcc
Q 007979 106 HDNLIVACKMHDIVHDFAQFVSQNE 130 (582)
Q Consensus 106 ~~~~~~~~~mhdl~~d~a~~i~~~~ 130 (582)
++...+|+|||++|++|+..+.++
T Consensus 429 -~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 -NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -CCCceEEEecHHHHHHHHhhhhHH
Confidence 344467999999999999887765
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=3.4e-09 Score=92.82 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=91.6
Q ss_pred ceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccc-cccccCCCCEEecCCCCCccccch-hh
Q 007979 175 MRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPR-NIEKLVHLRYLNLSSVTLIRKLPE-TL 252 (582)
Q Consensus 175 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i 252 (582)
.+.++++++.+.. +|. .-.++|++|++++| .+..+|. .++.+++|++|++++|. +..+|. .+
T Consensus 9 ~~~l~~~~~~l~~-------~p~--~~~~~l~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-------VPT--GIPSSATRLELESN------KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSCCSS-------CCT--TCCTTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTT
T ss_pred CCEEEecCCCCcc-------CCC--CCCCCCcEEEeCCC------cccEeCHHHhcCcccccEEECCCCc-ceEeChhHc
Confidence 4567777776533 221 23468999999994 4445554 56899999999999999 666664 47
Q ss_pred hccCCccEEecCCCcCccccccc-cccCCCCceeecCCccCCCcCCcc-CCCCCCCCccCeeee
Q 007979 253 CELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTDSLGHMPAG-IARLPSLRTLDEFHV 314 (582)
Q Consensus 253 ~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 314 (582)
+.+++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|.. +..+++|++|++.++
T Consensus 73 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 73 DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCC
Confidence 899999999999998 6666654 68999999999999965 456655 577889999886654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=3e-09 Score=92.62 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=60.3
Q ss_pred eEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccc-cccccccCCCCEEecCCCCCccccchh-hh
Q 007979 176 RSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNLSSVTLIRKLPET-LC 253 (582)
Q Consensus 176 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~ 253 (582)
+.++++++.+.. +|..+ .++|++|+|++|. +..+ |..++++++|++|+|++|. +..+|.. +.
T Consensus 15 ~~l~~~~n~l~~-------iP~~~--~~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLAS-------VPAGI--PTDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCSS-------CCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred cEEEeCCCCCCc-------cCCCc--CCCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhC
Confidence 566777766432 12112 2567777777633 3333 4556677777777777776 5555544 46
Q ss_pred ccCCccEEecCCCcCccccccc-cccCCCCceeecCCcc
Q 007979 254 ELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTD 291 (582)
Q Consensus 254 ~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 291 (582)
++++|++|+|++|. +..+|.. +..+++|++|++++|.
T Consensus 79 ~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence 67777777777766 5555544 6667777777777663
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=6.7e-08 Score=95.98 Aligned_cols=237 Identities=14% Similarity=0.208 Sum_probs=138.6
Q ss_pred HccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCcccccccc
Q 007979 199 FGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALPQGI 276 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i 276 (582)
|.++ +|+.+.+.. .+..++ .++.+ .+|+.+.+.. . +..++ ..|.++.+|+.+++.+|. +..+|...
T Consensus 132 F~~~-~L~~i~l~~-------~i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 132 FRNS-QIAKVVLNE-------GLKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp TTTC-CCSEEECCT-------TCCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred cccC-CccEEEeCC-------CccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 5554 577777665 344444 23444 3577777765 3 44444 456677777777777655 55566544
Q ss_pred ccCCCCceeecCCccCCCcCCc-cCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHHH
Q 007979 277 GKLINMKHLLNERTDSLGHMPA-GIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEAK 355 (582)
Q Consensus 277 ~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~ 355 (582)
....+|+.+.+..+ +..++. .+..+++|+.+.+.. . +.. +.
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-------------~---------l~~--------I~------ 241 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-------------N---------VST--------IG------ 241 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-------------T---------CCE--------EC------
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-------------C---------ccC--------cc------
Confidence 44566776666533 233332 244455555544211 0 000 00
Q ss_pred hcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCC-
Q 007979 356 RLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENC- 434 (582)
Q Consensus 356 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~- 434 (582)
...+.. .+|+.+.+. +.+..+.+..|..+++|+.+.+.++...
T Consensus 242 ----------------------------------~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 242 ----------------------------------QEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp ----------------------------------TTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred ----------------------------------cccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 001222 356666663 2334443566778888888888876543
Q ss_pred ---CcCCC--CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCC
Q 007979 435 ---EQLPP--LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTG 509 (582)
Q Consensus 435 ---~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~ 509 (582)
..++. +.++++|+.+.+.+ +++.++...|. ++++|+.+.|.+ +++.+....+
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~----------------~c~~L~~l~lp~--~l~~I~~~aF--- 342 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG----------------GNRKVTQLTIPA--NVTQINFSAF--- 342 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT----------------TCCSCCEEEECT--TCCEECTTSS---
T ss_pred CcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc----------------CCCCccEEEECc--cccEEcHHhC---
Confidence 12332 78889999999974 38888776543 678888888854 4666665443
Q ss_pred CCCCcccccccceecccccccccCC-cCCCCC-CCcceEEEeC
Q 007979 510 HPFIDIMPRLSALAIAVCPKLKALP-DHIHQT-TTLKGLSIWG 550 (582)
Q Consensus 510 ~~~~~~~~~L~~L~l~~C~~L~~lp-~~~~~l-~~L~~L~i~~ 550 (582)
..+ +|+.+.+.+. .+..++ ..+..+ ..++.|++-.
T Consensus 343 ----~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 343 ----NNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ----SSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ----CCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 367 8999999884 455555 345555 3688888865
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=4.5e-09 Score=91.18 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=44.9
Q ss_pred CceeEEEeCCCccccccccccc-cccccccCCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCcccccc-ccccC
Q 007979 203 TSLRALDIGNWSATLCSSILDI-PRNIEKLVHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQ-GIGKL 279 (582)
Q Consensus 203 ~~Lr~L~L~~~~~~~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~l 279 (582)
++|++|+|++| .+..+ |..++.+++|++|+|++|. +..+|.. +.++++|++|+|++|. +..+|. .+..+
T Consensus 30 ~~l~~L~L~~N------~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 101 (170)
T 3g39_A 30 TTTQVLYLYDN------QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNL 101 (170)
T ss_dssp TTCSEEECCSS------CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCcEEEcCCC------cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCC
Confidence 55666666663 23333 3445666666666666666 4444433 4566666666666665 444443 35566
Q ss_pred CCCceeecCCcc
Q 007979 280 INMKHLLNERTD 291 (582)
Q Consensus 280 ~~L~~L~l~~~~ 291 (582)
++|++|++++|.
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 666666666653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.5e-09 Score=93.14 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=85.5
Q ss_pred eEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccccc-cccc
Q 007979 153 CHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRN-IEKL 231 (582)
Q Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~-i~~L 231 (582)
+.+...++....+|..+. ++|+.|++++|.+... .|..|.++++|++|+|++| .+..+|.. ++.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N------~l~~i~~~~~~~l 80 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL------EPGVFDHLVNLQQLYFNSN------KLTAIPTGVFDKL 80 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS------CCCCCCTTTTTTC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc------CHHHhcCCcCCCEEECCCC------CCCccChhHhCCc
Confidence 345555566667777654 8999999999986542 4566899999999999994 55567755 5899
Q ss_pred CCCCEEecCCCCCccccchh-hhccCCccEEecCCCcCcccccccccc
Q 007979 232 VHLRYLNLSSVTLIRKLPET-LCELYNLEKLDISYCINLKALPQGIGK 278 (582)
Q Consensus 232 ~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~ 278 (582)
++|++|+|++|. +..+|.. +..+++|++|+|++|. +...|..+..
T Consensus 81 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~ 126 (174)
T 2r9u_A 81 TQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMY 126 (174)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred chhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC-cccccccHHH
Confidence 999999999999 7777765 9999999999999997 5555554433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=5.7e-09 Score=90.49 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=66.8
Q ss_pred eeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCccccccc-cccCCCCc
Q 007979 205 LRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQG-IGKLINMK 283 (582)
Q Consensus 205 Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~ 283 (582)
.+++++++ ..+..+|..+. .+|++|++++|.+.+..|..+.++++|++|+|++|. +..+|.. +..+++|+
T Consensus 11 ~~~l~~s~------n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCSG------KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECTT------SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCEEEeCC------CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCC
Confidence 45677776 25556666553 677888888877333335667778888888888876 5555544 46778888
Q ss_pred eeecCCccCCCcCCccCCCCCCCCccCeeeec
Q 007979 284 HLLNERTDSLGHMPAGIARLPSLRTLDEFHVS 315 (582)
Q Consensus 284 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 315 (582)
+|++++|......+..+..+++|+.|++.++.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88887775433333346777777777765543
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=1.4e-07 Score=93.69 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=78.1
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~ 244 (582)
..+|.++ +|+.+.+..+- . .+...+|.++ +|+.+.+.. .+..++ .++.++.+|+.+++.+|.
T Consensus 129 ~~aF~~~-~L~~i~l~~~i-~------~I~~~aF~~~-~L~~i~lp~-------~l~~I~~~aF~~c~~L~~l~l~~n~- 191 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEGL-K------SIGDMAFFNS-TVQEIVFPS-------TLEQLKEDIFYYCYNLKKADLSKTK- 191 (401)
T ss_dssp TTTTTTC-CCSEEECCTTC-C------EECTTTTTTC-CCCEEECCT-------TCCEECSSTTTTCTTCCEEECTTSC-
T ss_pred HhhcccC-CccEEEeCCCc-c------EECHHhcCCC-CceEEEeCC-------CccEehHHHhhCcccCCeeecCCCc-
Confidence 3356665 79999987762 1 1123347665 699999986 555665 578899999999999988
Q ss_pred ccccchhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCc
Q 007979 245 IRKLPETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERT 290 (582)
Q Consensus 245 ~~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~ 290 (582)
+..+|...-...+|+.+.+..+ +..++ ..+..+++|+.+.+..+
T Consensus 192 l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 192 ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 7888866445799999999864 55655 45788999999998764
No 146
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=107.44 Aligned_cols=88 Identities=15% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCchHHHHhhhccCChhhhhHhhhccCCCCCCccCHHHHHHHHHHcCCccCCCcccHHHHHHHHHHHHHhccCccccccC
Q 007979 26 KGVLSPLLLSYNDLPSRVKRCFSYCAVFPKDFNIMKEKLISMWMAQGYFSAEQDEEMDIIGEEYFNILATRSFFQEFKRD 105 (582)
Q Consensus 26 ~~i~~~L~lSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~aeg~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 105 (582)
..+..++..||+.||++.|.||++||+||+|+.|+.+.++..|.++ .+.++.++++|+++++++...
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~-- 428 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDR-- 428 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEE--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEec--
Confidence 3588999999999999999999999999999999999999999543 234678999999999998543
Q ss_pred CCCCeeEEEeCHHHHHHHHHhh
Q 007979 106 HDNLIVACKMHDIVHDFAQFVS 127 (582)
Q Consensus 106 ~~~~~~~~~mhdl~~d~a~~i~ 127 (582)
++....|+||+++|+++....
T Consensus 429 -~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 429 -NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -ETTEEEEECCHHHHHHHHHHT
T ss_pred -CCCccEEEEcHHHHHHHHhhh
Confidence 233456899999999998774
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=2e-07 Score=92.85 Aligned_cols=307 Identities=12% Similarity=0.031 Sum_probs=145.6
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~ 244 (582)
..+|.+|.+|+.+.+..+- . .+-..+|.+|.+|+.+++.. .+..++ ..+.++..|+.+.+..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~i-~------~I~~~aF~~c~~L~~i~lp~-------~l~~I~~~aF~~c~~L~~i~~p~~-- 127 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPSTV-R------EIGEFAFENCSKLEIINIPD-------SVKMIGRCTFSGCYALKSILLPLM-- 127 (394)
T ss_dssp TTTTTTCTTEEEEECCTTC-C------EECTTTTTTCTTCCEECCCT-------TCCEECTTTTTTCTTCCCCCCCTT--
T ss_pred HHHhhCCCCceEEEeCCCc-c------CcchhHhhCCCCCcEEEeCC-------CceEccchhhcccccchhhcccCc--
Confidence 4467888999999887542 1 11233488899999998875 344443 45667777777666543
Q ss_pred ccccc-hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCc-cCCCCCCCCccCeeeecCCCCcCC
Q 007979 245 IRKLP-ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPA-GIARLPSLRTLDEFHVSGGEGVDG 322 (582)
Q Consensus 245 ~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~ 322 (582)
+..++ ..|.++..+..........+ -...+..+++|+.+.+.++. ..++. .+..+++|+.+.+.... ..
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~~-----~~ 198 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRNL-----KI 198 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTTC-----CE
T ss_pred eeeecceeeecccccccccCcccccc--chhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCCc-----eE
Confidence 22222 23444443333333222111 11335556666666665431 22222 24455566655532110 00
Q ss_pred CCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEE
Q 007979 323 RKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKEL 402 (582)
Q Consensus 323 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 402 (582)
.....+.....|+.+....... .+.+ ....+..|+.+.+...... .....+..+.+|+.+
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~~--~i~~-------~~~~~~~l~~i~ip~~~~~-----------i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSLY--YLGD-------FALSKTGVKNIIIPDSFTE-----------LGKSVFYGCTDLESI 258 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTCC--EECT-------TTTTTCCCCEEEECTTCCE-----------ECSSTTTTCSSCCEE
T ss_pred eCchhhccccccceeecCCCce--Eeeh-------hhcccCCCceEEECCCcee-----------cccccccccccceeE
Confidence 0011222222232222110000 0000 0112234444444211000 001133455666666
Q ss_pred EEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccc
Q 007979 403 FIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVII 482 (582)
Q Consensus 403 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (582)
.+..+.. .+....+..+.+++.+........ -..+..+.+|+.+.+.++ ++.++...|.
T Consensus 259 ~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF~---------------- 317 (394)
T 4fs7_A 259 SIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAFE---------------- 317 (394)
T ss_dssp EECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTTT----------------
T ss_pred EcCCCcc-eeeccccccccccceeccCceeec--cccccccccccccccccc--cceechhhhc----------------
Confidence 6654322 222445556666766666543211 112555667777776543 6666654432
Q ss_pred cCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCC-cCCCCCCCcceEEEe
Q 007979 483 AFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP-DHIHQTTTLKGLSIW 549 (582)
Q Consensus 483 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~ 549 (582)
++.+|+.+.|.+ +++.+....+ ..+.+|+.+.+.. .++.++ ..+.++++|+.+++.
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF-------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSF-------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTT-------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCCEEEeCC--cccEEhHHhc-------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 556666666642 3455543322 2566777777653 255554 346667777777764
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=6.8e-08 Score=94.62 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=50.1
Q ss_pred HccCCceeEEEeCC-Ccccccccccccc-ccccccCCCCEEecCCCCCccccchhhhccCCccEEecCCCcCcccccccc
Q 007979 199 FGKLTSLRALDIGN-WSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLPETLCELYNLEKLDISYCINLKALPQGI 276 (582)
Q Consensus 199 ~~~l~~Lr~L~L~~-~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 276 (582)
+..+.+|++|+|++ | .+..+| ..++.|.+|++|+|++|.+.+..|..|.+|++|++|+|++|. +..+|..+
T Consensus 27 l~~~~~L~~L~l~~~n------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCS------SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred CCCCCCeeEEEccCCC------CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 56666666666664 3 333343 456666677777777666333334456666777777777665 55555444
Q ss_pred ccCCCCceeecCCcc
Q 007979 277 GKLINMKHLLNERTD 291 (582)
Q Consensus 277 ~~l~~L~~L~l~~~~ 291 (582)
....+|+.|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 333336666666664
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.6e-07 Score=92.03 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=77.4
Q ss_pred EEEeCCCccccccccccccccccccCCCCEEecCC-CCCccccc-hhhhccCCccEEecCCCcCcccc-ccccccCCCCc
Q 007979 207 ALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSS-VTLIRKLP-ETLCELYNLEKLDISYCINLKAL-PQGIGKLINMK 283 (582)
Q Consensus 207 ~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~-~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~l~~L~ 283 (582)
.+++++ .+.+..+|. +..+.+|++|+|++ |. +..+| ..|++|++|++|+|++|. +..+ |..++.|++|+
T Consensus 12 ~v~~~~-----~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTR-----DGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCS-----SCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred EEEcCC-----CCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCC
Confidence 346666 225778999 99999999999996 88 66666 679999999999999998 5554 55789999999
Q ss_pred eeecCCccCCCcCCccCCCCCCCCccCeeeec
Q 007979 284 HLLNERTDSLGHMPAGIARLPSLRTLDEFHVS 315 (582)
Q Consensus 284 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 315 (582)
+|++++|.. ..+|..+.....|+.|++..+.
T Consensus 84 ~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSFNAL-ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EEECCSSCC-SCCCSTTTCSCCCCEEECCSSC
T ss_pred EEeCCCCcc-ceeCHHHcccCCceEEEeeCCC
Confidence 999999955 5666654443348888866543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=2.2e-08 Score=98.41 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCCceEEEEeCCcCCCCchhhhhHHHHHc-cCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccch
Q 007979 172 IKRMRSLFISGNMLDNSSLNGKMLKELFG-KLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPE 250 (582)
Q Consensus 172 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 250 (582)
++.|+.|++++|.+.... ...+...+. ...+|++|+|++|.++. ..+.. ....+++|++|+|++|.+...-..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~--~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~---l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK--CTVVAAVLGSGRHALDEVNLASCQLDP-AGLRT---LLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHH--HHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHH---THHHHHTEEEEECCSSCCCHHHHH
T ss_pred HhhCCEEEecCCCCCHHH--HHHHHHHHhhCCCCceEEEecCCCCCH-HHHHH---HHHHHHhccHhhcCCCCCCHHHHH
Confidence 356777888877754321 122333333 23678888888755432 11111 123455677888887773222222
Q ss_pred hh-----hccCCccEEecCCCcCcc----ccccccccCCCCceeecCCcc
Q 007979 251 TL-----CELYNLEKLDISYCINLK----ALPQGIGKLINMKHLLNERTD 291 (582)
Q Consensus 251 ~i-----~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~ 291 (582)
.+ ...++|++|+|++|.... .++..+..+++|++|++++|.
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 22 235677778877776221 244445566777777777663
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=6.8e-06 Score=81.73 Aligned_cols=282 Identities=11% Similarity=0.098 Sum_probs=162.0
Q ss_pred HHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCCccccc-hhhhccCCccEEecCCCcCccccc-c
Q 007979 198 LFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTLIRKLP-ETLCELYNLEKLDISYCINLKALP-Q 274 (582)
Q Consensus 198 ~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~ 274 (582)
+|.++.+|+.+.+.. .+..++ .++.++.+|+.+++..+ +..++ ..+.++.+|+.+.+..+ +..+. .
T Consensus 66 AF~~c~~L~~i~lp~-------~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~ 134 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-------TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIGVE 134 (394)
T ss_dssp TTTTCTTEEEEECCT-------TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTT
T ss_pred HhhCCCCceEEEeCC-------CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeecce
Confidence 388999999999975 566664 56889999999999754 45554 45888899998877653 33333 2
Q ss_pred ccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCCCccccccccCCCccCeeeeeecCCCCChhHH
Q 007979 275 GIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGRKGCRLESLKNMELLQVCGIRRLGNVSDVDEA 354 (582)
Q Consensus 275 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~ 354 (582)
.+..+..+.......... .-...+..+++|+.+.+.... .......+..+.+|+.+..-. .+. ..
T Consensus 135 aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-----~~I~~~~F~~c~~L~~i~l~~-----~~~---~I 199 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-----ETLHNGLFSGCGKLKSIKLPR-----NLK---II 199 (394)
T ss_dssp TTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-----CEECTTTTTTCTTCCBCCCCT-----TCC---EE
T ss_pred eeecccccccccCccccc--cchhhhcccCCCcEEecCCcc-----ceeccccccCCCCceEEEcCC-----Cce---Ee
Confidence 344443333332222211 112346778888877653211 111123344445555443211 111 11
Q ss_pred HhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCC
Q 007979 355 KRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENC 434 (582)
Q Consensus 355 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 434 (582)
....+..+..|+.+.+..... .+.+......+|+.+.+.... ..+....+..+.+|+.+.+..+...
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~~------------~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~ 266 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSLY------------YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR 266 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTCC------------EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE
T ss_pred CchhhccccccceeecCCCce------------EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce
Confidence 112344555555554321110 011123345678888875432 2232456678899999999876332
Q ss_pred CcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccccCcccCCCCCCc
Q 007979 435 EQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWDYGITRTGHPFID 514 (582)
Q Consensus 435 ~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 514 (582)
-.-..+..++.++.+..... .++...+ ..+.+|+.+.+.+ +++.+.... +.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~----~i~~~~F----------------~~~~~L~~i~l~~--~i~~I~~~a-------F~ 317 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSV----IVPEKTF----------------YGCSSLTEVKLLD--SVKFIGEEA-------FE 317 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSS----EECTTTT----------------TTCTTCCEEEECT--TCCEECTTT-------TT
T ss_pred eeccccccccccceeccCce----eeccccc----------------ccccccccccccc--ccceechhh-------hc
Confidence 22233677788888776543 2444332 2567888877753 456555433 33
Q ss_pred ccccccceecccccccccCC-cCCCCCCCcceEEEe
Q 007979 515 IMPRLSALAIAVCPKLKALP-DHIHQTTTLKGLSIW 549 (582)
Q Consensus 515 ~~~~L~~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~ 549 (582)
.+++|+.+++.+ .++.|+ ..+.++++|+.+.+.
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 788899998864 477775 457778888888774
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=5e-08 Score=95.95 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccc-cccCCCCEEecCCCCCcc-----
Q 007979 173 KRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNI-EKLVHLRYLNLSSVTLIR----- 246 (582)
Q Consensus 173 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i-~~L~~L~~L~L~~~~~~~----- 246 (582)
++|+.|++++|.+... ........+++|++|+|++|.++. .....+...+ ...++|++|+|++|. ++
T Consensus 101 ~~L~~L~Ls~n~l~~~-----~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPA-----GLRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHH-----HHHHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH
T ss_pred CCceEEEecCCCCCHH-----HHHHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH
Confidence 5677777777764321 122223344567777777755443 1222232223 234567777777776 33
Q ss_pred ccchhhhccCCccEEecCCCcCcc----ccccccccCCCCceeecCCccCCCc----CCccCCCCCCCCccCeeee
Q 007979 247 KLPETLCELYNLEKLDISYCINLK----ALPQGIGKLINMKHLLNERTDSLGH----MPAGIARLPSLRTLDEFHV 314 (582)
Q Consensus 247 ~lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~~~~~ 314 (582)
.++..+..+++|++|+|++|.... .++..+...++|++|++++|..... ++..+...++|++|++.++
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 244445666677777777766221 1344455566677777776643221 2222334456666665443
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=3.4e-07 Score=80.36 Aligned_cols=120 Identities=14% Similarity=0.026 Sum_probs=82.9
Q ss_pred cccCCCCceEEEEeCC-cCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcc
Q 007979 168 STCRIKRMRSLFISGN-MLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR 246 (582)
Q Consensus 168 ~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~ 246 (582)
.+...+.|++|++++| .+.... ...+...+...+.|++|+|++|.+.. .....+...+...+.|++|+|++|. ++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~-~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCCh-HHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 4566788899999888 765431 22345557778889999999877654 3444566666777888999999888 44
Q ss_pred c-----cchhhhccCCccEEec--CCCcCccc----cccccccCCCCceeecCCcc
Q 007979 247 K-----LPETLCELYNLEKLDI--SYCINLKA----LPQGIGKLINMKHLLNERTD 291 (582)
Q Consensus 247 ~-----lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~i~~l~~L~~L~l~~~~ 291 (582)
. +...+...++|++|+| ++|..-.. +...+...++|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3 4566777788899998 66763222 33445566788888888774
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=8e-07 Score=86.58 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=27.9
Q ss_pred cchhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccC--CCCCCCCccCee
Q 007979 248 LPETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGI--ARLPSLRTLDEF 312 (582)
Q Consensus 248 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~~~ 312 (582)
++..+..+++|+.|.+++|..+ .+|. + .+++|++|++..|.........+ ..+++|+.|++.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3344455556666666554322 2332 2 25566666665443211111112 245666666553
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=1.9e-07 Score=79.62 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=39.1
Q ss_pred cCcccccccccccccccccccCcccCCCCCCcc----cccccceecccccccccCC-cCCCCCCCcceEEEeCCcchHH
Q 007979 483 AFPKLQSLFIEDLPELEEWDYGITRTGHPFIDI----MPRLSALAIAVCPKLKALP-DHIHQTTTLKGLSIWGCDLLEE 556 (582)
Q Consensus 483 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~----~~~L~~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~~C~~l~~ 556 (582)
.+++|+.|.|++|+.+++..... +.. .++|+.|+|++|++++.-- ..+..+++|+.|++++||.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 45555555555555554433211 112 3567888888887776411 1234577888888888887664
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=7.5e-05 Score=74.16 Aligned_cols=307 Identities=12% Similarity=0.093 Sum_probs=147.2
Q ss_pred ccccCCC-CceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCC
Q 007979 167 VSTCRIK-RMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 167 ~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~ 244 (582)
.+|.+++ .|+.+.+..+- ..+-..+|.++.+|+.+.+..+.- ..+..++ .++..+.+|+.+.+..+
T Consensus 57 ~aF~~~~~~L~sI~iP~sv-------t~Ig~~AF~~C~~L~~i~~~~n~p---~~l~~Ig~~aF~~c~~L~~i~~~~~-- 124 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTV-------TEIGSNAFYNCTSLKRVTIQDNKP---SCVKKIGRQAFMFCSELTDIPILDS-- 124 (394)
T ss_dssp TTTTTCCSCCCEEEECTTC-------CEECTTTTTTCTTCCEEEEGGGCC---CCCCEECTTTTTTCTTCCBCGGGTT--
T ss_pred hhccCCCCcCEEEEECCCe-------eEEhHHHhhCCccCceEeecCCCC---CeeeEechhhchhcccceeeccCCc--
Confidence 3566664 48888876542 111233478888888888865221 1244443 45667777777776543
Q ss_pred ccccc-hhhhccCCccEEecCCCcCccccc-cccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCC
Q 007979 245 IRKLP-ETLCELYNLEKLDISYCINLKALP-QGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDG 322 (582)
Q Consensus 245 ~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 322 (582)
+..++ ..+..+.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ +..+........+|+.+.+......
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~----- 195 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTR----- 195 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCE-----
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccc-----
Confidence 33443 34677888888888653 33333 34566777777777544 2333322222344554443211000
Q ss_pred CCccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEE
Q 007979 323 RKGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKEL 402 (582)
Q Consensus 323 ~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 402 (582)
.....+.....+. ....... ........ ...... .....+. .......+..+
T Consensus 196 i~~~af~~c~~l~---~~~~~~~-~~~~~~~~---~~~~~~-~~~~~~~--------------------~~~~~~~~~~~ 247 (394)
T 4gt6_A 196 IGTNAFSECFALS---TITSDSE-SYPAIDNV---LYEKSA-NGDYALI--------------------RYPSQREDPAF 247 (394)
T ss_dssp ECTTTTTTCTTCC---EEEECCS-SSCBSSSC---EEEECT-TSCEEEE--------------------ECCTTCCCSEE
T ss_pred cccchhhhccccc---eeccccc-ccccccce---eecccc-ccccccc--------------------ccccccccceE
Confidence 0011111111111 1111000 00000000 000000 0000000 00011122222
Q ss_pred EEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCCCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccc
Q 007979 403 FIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPPLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVII 482 (582)
Q Consensus 403 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (582)
.+... ...+....|..+.+|+.+.+.+....-.-..+..+++|+.+.+.+ .++.++...|.
T Consensus 248 ~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~---------------- 308 (394)
T 4gt6_A 248 KIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFA---------------- 308 (394)
T ss_dssp ECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT----------------
T ss_pred EcCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCCC--cccccCceeec----------------
Confidence 22110 011113345567777777775442211112256677777777753 36677665443
Q ss_pred cCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCC-cCCCCCCCcceEEEeCCc
Q 007979 483 AFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALP-DHIHQTTTLKGLSIWGCD 552 (582)
Q Consensus 483 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp-~~~~~l~~L~~L~i~~C~ 552 (582)
++.+|+.+.|.+ +++.+.... +..+.+|+.+.|-. .++.+. ..+.++++|+.+++.+..
T Consensus 309 ~c~~L~~i~lp~--~v~~I~~~a-------F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 309 GCISLKSIDIPE--GITQILDDA-------FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTT-------TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCcCEEEeCC--cccEehHhH-------hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 566777777753 355554433 23677888888753 466775 357778888888887653
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=5.7e-07 Score=76.68 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=46.7
Q ss_pred CCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCc--CCCCCCC----CCcceeecccccCceEeCccccCCCCC
Q 007979 397 LNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQ--LPPLGKL----PSLEKLYISDMKSVKRVGNEILGIESD 470 (582)
Q Consensus 397 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~~l~~l----~~L~~L~L~~~~~l~~~~~~~~~~~~~ 470 (582)
.+|++|++++|.++..--..+..+++|+.|+|++|...++ +..+..+ ++|++|+|++|..+++-+-..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~------ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA------ 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH------
Confidence 3567777776665433223345666677777776654332 1223332 356666666666555433221
Q ss_pred CCCCCCCCcccccCcccccccccccccccc
Q 007979 471 HHDSSSSSSVIIAFPKLQSLFIEDLPELEE 500 (582)
Q Consensus 471 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~ 500 (582)
+..+++|++|++++|+++++
T Consensus 135 ----------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 ----------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ----------GGGCTTCCEEEEESCTTCCC
T ss_pred ----------HhcCCCCCEEECCCCCCCCc
Confidence 12455666666666655544
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=1.5e-06 Score=76.10 Aligned_cols=120 Identities=10% Similarity=0.115 Sum_probs=86.6
Q ss_pred hhhHHHHHccCCceeEEEeCCC-ccccccccccccccccccCCCCEEecCCCCCcc-----ccchhhhccCCccEEecCC
Q 007979 192 GKMLKELFGKLTSLRALDIGNW-SATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR-----KLPETLCELYNLEKLDISY 265 (582)
Q Consensus 192 ~~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~ 265 (582)
.+.+...+...+.|++|+|++| .+.. .....+...+...++|++|+|++|. ++ .+...+...++|++|+|++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3446666889999999999997 7664 3555677777888999999999999 54 2455677778999999999
Q ss_pred CcCccc----cccccccCCCCceeec--CCccCCCc----CCccCCCCCCCCccCeee
Q 007979 266 CINLKA----LPQGIGKLINMKHLLN--ERTDSLGH----MPAGIARLPSLRTLDEFH 313 (582)
Q Consensus 266 ~~~l~~----lp~~i~~l~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~~~~ 313 (582)
|..-.. +...+...++|++|++ .+|..... +...+...++|++|++..
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 984322 4566777889999999 66743322 223344456777776544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=1e-05 Score=74.59 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=31.9
Q ss_pred ccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCccccchhhhccC--CccEEecCCCc
Q 007979 200 GKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIRKLPETLCELY--NLEKLDISYCI 267 (582)
Q Consensus 200 ~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~L~~~~ 267 (582)
..+++|+.|+|++|.+. .+..+|..++.+++|++|+|++|. +..+ ..+..+. +|++|+|++|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~---~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY---RLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCC---CCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCC---CCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCc
Confidence 44556666666665443 233344445555666666666655 3333 2233333 55555555555
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.9e-05 Score=76.80 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred cceeEEEEEecCCCcccccccCCCCceEEEEeCCcCCCCchhhhhHHHH-HccCCceeEEEeCC--Cccccccccccccc
Q 007979 150 EKVCHLMLVIGLGASFPVSTCRIKRMRSLFISGNMLDNSSLNGKMLKEL-FGKLTSLRALDIGN--WSATLCSSILDIPR 226 (582)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~l~~Lr~L~L~~--~~~~~~~~l~~lp~ 226 (582)
+.++.+.+.++....++. + ..++|+.|.+..+.+.. ..+... ...+++|+.|+|+. +...+...+..+..
T Consensus 172 P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~-----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPD-----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCH-----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCCh-----HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 455566655442122222 2 25566666666554321 111111 12466666666542 11111111222222
Q ss_pred cc--cccCCCCEEecCCCCCccccchhhh---ccCCccEEecCCCcCcc----ccccccccCCCCceeecCCc
Q 007979 227 NI--EKLVHLRYLNLSSVTLIRKLPETLC---ELYNLEKLDISYCINLK----ALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 227 ~i--~~L~~L~~L~L~~~~~~~~lp~~i~---~L~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~l~~~ 290 (582)
.+ +.+++|++|++++|.+....+..+. .+++|++|+|+.|.... .++..+..+++|+.|++++|
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 22 2356666666666653222222222 35566666666654221 13333445566666666555
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.8e-05 Score=72.86 Aligned_cols=81 Identities=26% Similarity=0.290 Sum_probs=61.6
Q ss_pred cccCCCCEEecCCCCCcc--ccchhhhccCCccEEecCCCcCccccccccccCC--CCceeecCCccCCCcCCc------
Q 007979 229 EKLVHLRYLNLSSVTLIR--KLPETLCELYNLEKLDISYCINLKALPQGIGKLI--NMKHLLNERTDSLGHMPA------ 298 (582)
Q Consensus 229 ~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------ 298 (582)
.++++|++|+|++|.+.+ .+|..+..+++|++|+|++|. +..+ ..+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999433 455678899999999999998 5555 3355555 999999999976655552
Q ss_pred -cCCCCCCCCccCe
Q 007979 299 -GIARLPSLRTLDE 311 (582)
Q Consensus 299 -~i~~l~~L~~L~~ 311 (582)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2556788888874
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.71 E-value=0.00017 Score=71.15 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCC--CCCCCCCcceeecccccCceEeCccc
Q 007979 394 QPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLP--PLGKLPSLEKLYISDMKSVKRVGNEI 464 (582)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~ 464 (582)
..+.+|+.+.+..+ ...+....+..+.+|+.+.+... ...++ .+..+++|+.+.+.++. ++.++...
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~a 305 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRV 305 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTT
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhh
Confidence 34455555555432 22222334445556666665432 22222 24555666666664433 55555443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.51 E-value=0.00057 Score=67.76 Aligned_cols=303 Identities=11% Similarity=0.097 Sum_probs=156.9
Q ss_pred cccccCCCCceEEEEeCCcCCCCchhhhhHHHHHccCCceeEEEeCCCcccccccccccc-ccccccCCCCEEecCCCCC
Q 007979 166 PVSTCRIKRMRSLFISGNMLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIP-RNIEKLVHLRYLNLSSVTL 244 (582)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp-~~i~~L~~L~~L~L~~~~~ 244 (582)
..+|.+|++|+.+.+..+.-... ..+-..+|.++..|+.+.+.. .+..++ ..+..+.+|+.+.+..+
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l---~~Ig~~aF~~c~~L~~i~~~~-------~~~~I~~~aF~~c~~L~~i~lp~~-- 147 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCV---KKIGRQAFMFCSELTDIPILD-------SVTEIDSEAFHHCEELDTVTIPEG-- 147 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCC---CEECTTTTTTCTTCCBCGGGT-------TCSEECTTTTTTCTTCCEEECCTT--
T ss_pred HHHhhCCccCceEeecCCCCCee---eEechhhchhcccceeeccCC-------ccceehhhhhhhhcccccccccce--
Confidence 55788999999999987632111 111233488888888877765 455554 45678899999999754
Q ss_pred ccccc-hhhhccCCccEEecCCCcCccccccccccCCCCceeecCCccCCCcCCccCCCCCCCCccCeeeecCCCCcCCC
Q 007979 245 IRKLP-ETLCELYNLEKLDISYCINLKALPQGIGKLINMKHLLNERTDSLGHMPAGIARLPSLRTLDEFHVSGGEGVDGR 323 (582)
Q Consensus 245 ~~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~ 323 (582)
+..++ ..+..+.+|+.+.+..+ +..+........+|+.+.+.... ...-...+..+.++............ .
T Consensus 148 ~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~-~--- 220 (394)
T 4gt6_A 148 VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPA-I--- 220 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCB-S---
T ss_pred eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccceeccccccccc-c---
Confidence 33443 45888999999998764 44554433344678888775542 11122334455555544322111000 0
Q ss_pred CccccccccCCCccCeeeeeecCCCCChhHHHhcccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEE
Q 007979 324 KGCRLESLKNMELLQVCGIRRLGNVSDVDEAKRLKLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELF 403 (582)
Q Consensus 324 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 403 (582)
...+..-.... ....... .....+....+.... .......+..+.+|+.+.
T Consensus 221 -~~~~~~~~~~~--~~~~~~~---------------~~~~~~~~~~ip~~v-----------~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 221 -DNVLYEKSANG--DYALIRY---------------PSQREDPAFKIPNGV-----------ARIETHAFDSCAYLASVK 271 (394)
T ss_dssp -SSCEEEECTTS--CEEEEEC---------------CTTCCCSEEECCTTE-----------EEECTTTTTTCSSCCEEE
T ss_pred -cceeecccccc--ccccccc---------------ccccccceEEcCCcc-----------eEcccceeeecccccEEe
Confidence 00000000000 0000000 000011111110000 000012345566677666
Q ss_pred EeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcCCC--CCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCccc
Q 007979 404 IGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQLPP--LGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVI 481 (582)
Q Consensus 404 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 481 (582)
+..... .+....+..+++|+.+.+... ...++. +.++++|+.+.|.++ ++.++...|.
T Consensus 272 lp~~~~-~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~--------------- 331 (394)
T 4gt6_A 272 MPDSVV-SIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFA--------------- 331 (394)
T ss_dssp CCTTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT---------------
T ss_pred cccccc-eecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhh---------------
Confidence 643221 222445667888888887532 333333 777888888888643 7777766543
Q ss_pred ccCcccccccccccccccccccCcccCCCCCCcccccccceecccccccccCCcCCCCCCCcceEEEe
Q 007979 482 IAFPKLQSLFIEDLPELEEWDYGITRTGHPFIDIMPRLSALAIAVCPKLKALPDHIHQTTTLKGLSIW 549 (582)
Q Consensus 482 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~l~~L~~L~i~ 549 (582)
++.+|+.+.|-. +++.+....+ ..+++|+.+++.+.... + ..+.....|+.+.+.
T Consensus 332 -~C~~L~~i~ip~--sv~~I~~~aF-------~~C~~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 332 -GCEQLERIAIPS--SVTKIPESAF-------SNCTALNNIEYSGSRSQ--W-NAISTDSGLQNLPVA 386 (394)
T ss_dssp -TCTTCCEEEECT--TCCBCCGGGG-------TTCTTCCEEEESSCHHH--H-HTCBCCCCC------
T ss_pred -CCCCCCEEEECc--ccCEEhHhHh-------hCCCCCCEEEECCceee--h-hhhhccCCCCEEEeC
Confidence 667888877743 3555554332 37788888888763211 1 234445666666553
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.0012 Score=65.12 Aligned_cols=112 Identities=14% Similarity=0.019 Sum_probs=71.0
Q ss_pred ccCCCCCcceEEEEeeecCCCCCCccchHHHHHhhCCCCCCCcEEEEeeEeCCCcCCchhhcCcCCcEEEEeCCCCCCcC
Q 007979 358 KLDKKKYLSCLRLWFDVKESGGRRKNEHDQLLLEALQPPLNLKELFIGSYGGNTVSPSWMMSLTNLRSLNLHLCENCEQL 437 (582)
Q Consensus 358 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l 437 (582)
.+..+..|+.+.+...... .....+..+.+|+.+.+... +..+....+..+.+|+.+.+.++... .+
T Consensus 235 ~f~~~~~L~~i~lp~~v~~-----------I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I 301 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNVTS-----------IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TL 301 (379)
T ss_dssp TTTTCSSCCEEEECTTCCE-----------ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EE
T ss_pred cccCCccceEEEcCCCccE-----------eCccccceeehhcccccccc-ceeccccccccccccccccccccccc-ee
Confidence 3456667777766422100 01124566788999988643 33443456778999999999876433 33
Q ss_pred C--CCCCCCCcceeecccccCceEeCccccCCCCCCCCCCCCCcccccCcccccccccccccccccc
Q 007979 438 P--PLGKLPSLEKLYISDMKSVKRVGNEILGIESDHHDSSSSSSVIIAFPKLQSLFIEDLPELEEWD 502 (582)
Q Consensus 438 ~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 502 (582)
+ .+.++++|+.+.|.+. ++.|+...|. ++.+|+.+.+-. +++.+.
T Consensus 302 ~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~----------------~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA--LKTIQVYAFK----------------NCKALSTISYPK--SITLIE 348 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTT----------------TCTTCCCCCCCT--TCCEEC
T ss_pred hhhhhcCCCCCCEEEcCcc--ccEEHHHHhh----------------CCCCCCEEEECC--ccCEEc
Confidence 3 2788899999999643 7888776543 567777777642 344444
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.30 E-value=0.0039 Score=54.07 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=64.0
Q ss_pred cCCCCceEEEEeCC-cCCCCchhhhhHHHHHccCCceeEEEeCCCccccccccccccccccccCCCCEEecCCCCCcc--
Q 007979 170 CRIKRMRSLFISGN-MLDNSSLNGKMLKELFGKLTSLRALDIGNWSATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR-- 246 (582)
Q Consensus 170 ~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~-- 246 (582)
..-+.|+.|+++++ .+... ....+-..+..-..|+.|+|++|.+.. .....+...+..-..|++|+|++|. ++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~~n~igd-~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~ 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLANTAISD-SEARGLIELIETSPSLRVLNVESNF-LTPE 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECTTSCCBH-HHHTTHHHHHHHCSSCCEEECCSSB-CCHH
T ss_pred hcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEccCCCCCh-HHHHHHHHHHhcCCccCeEecCCCc-CCHH
Confidence 34456777777764 44322 112244446666777777777766554 2444455555555677777777777 43
Q ss_pred ---ccchhhhccCCccEEecCCCcC--cc-----ccccccccCCCCceeecCCc
Q 007979 247 ---KLPETLCELYNLEKLDISYCIN--LK-----ALPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 247 ---~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~l~~L~~L~l~~~ 290 (582)
.+-+.+..-+.|++|+|++|.. +. .+...+..-+.|+.|++..+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2233344455677777765431 11 12223334456666666544
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.00 E-value=0.026 Score=48.84 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=66.3
Q ss_pred hhHHHHHccCCceeEEEeCCC-ccccccccccccccccccCCCCEEecCCCCCcc-----ccchhhhccCCccEEecCCC
Q 007979 193 KMLKELFGKLTSLRALDIGNW-SATLCSSILDIPRNIEKLVHLRYLNLSSVTLIR-----KLPETLCELYNLEKLDISYC 266 (582)
Q Consensus 193 ~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~L~~~ 266 (582)
..+...+..-+.|+.|+|+++ .+.. .....+-..+..-..|+.|+|++|. ++ .+.+.+..-+.|++|+|++|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC
Confidence 345555677889999999984 5543 2444555667777889999999998 54 34455666788999999998
Q ss_pred cCccc----cccccccCCCCceeecCCc
Q 007979 267 INLKA----LPQGIGKLINMKHLLNERT 290 (582)
Q Consensus 267 ~~l~~----lp~~i~~l~~L~~L~l~~~ 290 (582)
..-.. +-..+..-+.|++|++.++
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 73321 3334445566888888754
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.39 E-value=0.13 Score=41.32 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=20.8
Q ss_pred CCCEEecCCCCCccccch-hhhccCCccEEecCCCc
Q 007979 233 HLRYLNLSSVTLIRKLPE-TLCELYNLEKLDISYCI 267 (582)
Q Consensus 233 ~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~L~~~~ 267 (582)
+|++|+|++|. +..+|. .|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 46666666666 555553 35566666666666654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.64 E-value=0.25 Score=39.57 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=40.9
Q ss_pred CEEecCCCCCcc--ccchhhhccCCccEEecCCCcCccccccc-cccCCCCceeecCCcc
Q 007979 235 RYLNLSSVTLIR--KLPETLCELYNLEKLDISYCINLKALPQG-IGKLINMKHLLNERTD 291 (582)
Q Consensus 235 ~~L~L~~~~~~~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 291 (582)
.+++.+++. +. .+|..+. .+|++|+|++|. +..+|.+ +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-CccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 367777777 55 7886542 479999999998 7777754 5789999999999884
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.92 E-value=1.2e+02 Score=22.26 Aligned_cols=14 Identities=14% Similarity=0.066 Sum_probs=9.6
Q ss_pred Ccccccccceeccc
Q 007979 513 IDIMPRLSALAIAV 526 (582)
Q Consensus 513 ~~~~~~L~~L~l~~ 526 (582)
+..+.+|+.+.+.+
T Consensus 39 F~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 39 FSGCTALEKLILTG 52 (100)
T ss_dssp STTCTTCCCEEECC
T ss_pred HhccCCccEEEEcC
Confidence 33677777777765
Done!