BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007982
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 156/347 (44%), Gaps = 59/347 (17%)
Query: 109 CGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLE 168
CGKSTL+ AI + + EE + E +I G D L+ V+E
Sbjct: 472 CGKSTLMRAIANGQVDGFPT-------QEECRTVYVEHDIDGTHSDTS--VLDFVFESGV 522
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
+ +K L GF M A SGGW+M++ALARA+ N ILLLDEPTN
Sbjct: 523 GTKEAIKDK-----LIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577
Query: 229 HLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTR 288
HLD WL L + ISH FL+ VC II+ + +L+ Y GNF ++V+
Sbjct: 578 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637
Query: 289 SELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVK 348
K Y E++++ F ++K+K + K+
Sbjct: 638 P-----AAKAY----EELSNTD---LEFKFPEPGYLEGVKTKQKAIVKVTN--------- 676
Query: 349 DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKST 408
+ F++ K P + +++F L SR+A++GPNGAGKST
Sbjct: 677 ---MEFQYPGTSK--PQI-----------------TDINFQCSLSSRIAVIGPNGAGKST 714
Query: 409 LLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD--MDMSALQYM 453
L+ ++TG+L+P G V H + RIA QH ++ +D + +Y+
Sbjct: 715 LINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 761
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
R + GPNG GKSTL++ + V DG + + + +H + D S L ++
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEHDIDGTHSDTSVLDFVF 518
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ G +E ++ + FG T + MP+ LS G + ++ A R +LLLDEPTN
Sbjct: 519 ESGVGTKE-AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577
Query: 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
HLD + L LN + +SHD ++ V I E + +++G+ +F
Sbjct: 578 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 56/79 (70%)
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF 542
++ LS GQ+ ++V A +++PH+++LDEPTN+LD +++ +L++AL E++GG+++++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 543 RLINQVAHEIWVCENQAVT 561
+ E+W ++ +T
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%)
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS 255
+ R SGG ++++ LA + P +++LDEPTN+LD ++ L + LK+F+ +++I+HS
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
Query: 256 QDF 258
+F
Sbjct: 958 AEF 960
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 150/347 (43%), Gaps = 59/347 (17%)
Query: 109 CGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLE 168
CGKSTL AI + + EE + E +I G D L+ V+E
Sbjct: 472 CGKSTLXRAIANGQVDGFPT-------QEECRTVYVEHDIDGTHSDTS--VLDFVFESGV 522
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
+ +K L GF A SGGW+ ++ALARA+ N ILLLDEPTN
Sbjct: 523 GTKEAIKDK-----LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTN 577
Query: 229 HLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTR 288
HLD WL L + ISH FL+ VC II+ + +L+ Y GNF ++V+
Sbjct: 578 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637
Query: 289 SELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVK 348
K Y E++++ F ++K+K +
Sbjct: 638 P-----AAKAY----EELSNTD---LEFKFPEPGYLEGVKTKQKAIV------------- 672
Query: 349 DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKST 408
KV F G P + +++F L SR+A++GPNGAGKST
Sbjct: 673 -KVTNXEFQYPGTSKPQI-----------------TDINFQCSLSSRIAVIGPNGAGKST 714
Query: 409 LLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD--MDMSALQYM 453
L+ ++TG+L+P G V H + RIA QH ++ +D + +Y+
Sbjct: 715 LINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 761
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
R + GPNG GKSTL + + V DG + + + +H + D S L ++
Sbjct: 463 RYGICGPNGCGKSTLXRAIANGQV--DGFPTQEECRTV--YVEHDIDGTHSDTSVLDFVF 518
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ G +E ++ + FG T + P+ LS G + ++ A R +LLLDEPTN
Sbjct: 519 ESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTN 577
Query: 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
HLD + L LN + +SHD ++ V I E + +++G+ +F
Sbjct: 578 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 55/79 (69%)
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF 542
++ LS GQ+ ++V A +++PH+++LDEPTN+LD +++ +L++AL E++GG+++++H
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 543 RLINQVAHEIWVCENQAVT 561
+ E+W ++ T
Sbjct: 959 EFTKNLTEEVWAVKDGRXT 977
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%)
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS 255
+ R SGG ++++ LA + P +++LDEPTN+LD ++ L + LK+F+ +++I+HS
Sbjct: 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
Query: 256 QDF 258
+F
Sbjct: 958 AEF 960
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 150/347 (43%), Gaps = 59/347 (17%)
Query: 109 CGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLE 168
CGKSTL AI + + EE + E +I G D L+ V+E
Sbjct: 466 CGKSTLXRAIANGQVDGFPT-------QEECRTVYVEHDIDGTHSDTS--VLDFVFESGV 516
Query: 169 ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN 228
+ +K L GF A SGGW+ ++ALARA+ N ILLLDEPTN
Sbjct: 517 GTKEAIKDK-----LIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTN 571
Query: 229 HLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTR 288
HLD WL L + ISH FL+ VC II+ + +L+ Y GNF ++V+
Sbjct: 572 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 631
Query: 289 SELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVK 348
K Y E++++ F ++K+K +
Sbjct: 632 P-----AAKAY----EELSNTD---LEFKFPEPGYLEGVKTKQKAIV------------- 666
Query: 349 DKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKST 408
KV F G P + +++F L SR+A++GPNGAGKST
Sbjct: 667 -KVTNXEFQYPGTSKPQI-----------------TDINFQCSLSSRIAVIGPNGAGKST 708
Query: 409 LLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD--MDMSALQYM 453
L+ ++TG+L+P G V H + RIA QH ++ +D + +Y+
Sbjct: 709 LINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 755
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454
R + GPNG GKSTL + + V DG + + + +H + D S L ++
Sbjct: 457 RYGICGPNGCGKSTLXRAIANGQV--DGFPTQEECRTV--YVEHDIDGTHSDTSVLDFVF 512
Query: 455 KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514
+ G +E ++ + FG T + P+ LS G + ++ A R +LLLDEPTN
Sbjct: 513 ESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTN 571
Query: 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
HLD + L LN + +SHD ++ V I E + +++G+ +F
Sbjct: 572 HLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 627
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 55/79 (69%)
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDF 542
++ LS GQ+ ++V A +++PH+++LDEPTN+LD +++ +L++AL E++GG+++++H
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 543 RLINQVAHEIWVCENQAVT 561
+ E+W ++ T
Sbjct: 953 EFTKNLTEEVWAVKDGRXT 971
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%)
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS 255
+ R SGG ++++ LA + P +++LDEPTN+LD ++ L + LK+F+ +++I+HS
Sbjct: 892 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 951
Query: 256 QDF 258
+F
Sbjct: 952 AEF 954
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 91/404 (22%), Positives = 171/404 (42%), Gaps = 64/404 (15%)
Query: 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226
+E L + + E++ L ++ ++ + SGG R+A+A AL N T DEP
Sbjct: 127 IELLKKADETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 227 TNHLDLEACVWLEETLKKFD---RILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283
+++LD+ + +++ + ++V+ H L+ ++IIH+ + Y G F Q
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD-YLSDIIHVVYGEPGVY-GIFSQ 243
Query: 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLT 343
TR+ + E K E + Y +F K + + + +TL R
Sbjct: 244 PKGTRNGINEFLRGYLKDEN---VRFRPYEIKF----TKTGERVEIERETLVTYPR---- 292
Query: 344 EKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNG 403
+VKD FR ++ P ++ EV + +VGPNG
Sbjct: 293 --LVKD-YGSFRL----EVEPGEIKKGEV-----------------------IGIVGPNG 322
Query: 404 AGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEE 463
GK+T +K + G P +G + L +A Q++ K D + + + + K +
Sbjct: 323 IGKTTFVKXLAGVEEPTEGKI--EWDLTVAYKPQYI--KADYEGTVYELLSK----IDAS 374
Query: 464 KMRAAIGRFGLTGKAQVMPMKN-----LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518
K+ + + L ++ + + LS G+ RV A R + LLDEP+ +LD+
Sbjct: 375 KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434
Query: 519 ETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQ 558
E +++ A+ + ++V HD I+ V+ + V E +
Sbjct: 435 EQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGE 478
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP--------LDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
V +VGPNG GKST +K++ G L+P DG++R + + + L +
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 448 SALQY---MIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN--------LSDGQRSRVVF 496
QY + K G E ++ A L + + ++N LS G+ RV
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEA---LNEWDGGLVLVSHDFRLINQVAHEIW 553
A R DEP+++LDI + A A L+E +++V HD +++ ++ I
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229
Query: 554 VC 555
V
Sbjct: 230 VV 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 163 VYERLEALDASTAEKR--AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
VYE L +DAS E+L LG + ++ + SGG R+A+A L + I
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGI-IDLYDREVNELSGGELQRVAIAATLLRDADI 422
Query: 221 LLLDEPTNHLDLEACVWLEETLK----KFDRILVVISH 254
LLDEP+ +LD+E + + ++ K ++ +V+ H
Sbjct: 423 YLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDL 417
++QF +V+F Y PD L+ + L F + ALVGPNG+GKST+ L+ TG
Sbjct: 14 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 418 VPLDGMV-----RRHNHLRIA---QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAI 469
+ LDG R+ H ++A Q Q L +++ Y + + P EE + AA
Sbjct: 74 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIA---YGLTQKPTMEE--ITAAA 128
Query: 470 GRFGLTGKAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD-- 517
+ G +P LS GQR V A R+P +L+LD+ T+ LD
Sbjct: 129 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 188
Query: 518 --IETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWV 554
++ L E+ + ++L++ L+ Q H +++
Sbjct: 189 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFL 227
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 167 LEALDASTAEKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
+E + A+ + A + GL G++ + ++ SGG R +ALARAL P +L+LD
Sbjct: 121 MEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILD 179
Query: 225 EPTNHLDLEACVWLEETL----KKFDRILVVISH 254
+ T+ LD + + +E+ L +++ R +++I+
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQ 213
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 159/370 (42%), Gaps = 59/370 (15%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQ 256
SGG R+A+A AL DEP+++LD+ + + +++ + ++V+ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARF 316
L+ +++IH+ + Y G F + TR+ + N+ Q + E + + Y RF
Sbjct: 289 AVLD-YLSDVIHVVYGEPGVY-GIFSKPKGTRNGI--NEFLQGYLKDENV-RFRPYEIRF 343
Query: 317 GHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGY 376
KL+ + + +TL + R +VKD V+ G E+ G
Sbjct: 344 ----TKLSERVDVERETLVEYPR------LVKDYGSFKLEVEPG----------EIRKGE 383
Query: 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH 436
+ +VGPNG GK+T +K++ G P +G V L +A
Sbjct: 384 V------------------IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKP 423
Query: 437 QHLAEKLDMDMSALQYMIKEYPGNE---EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
Q++ + + + L I N + ++ +G L + +++LS G+ R
Sbjct: 424 QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN----VEDLSGGELQR 479
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVA 549
V A R + LLDEP+ +LD+E +++ A+ + ++V HD +I+ V+
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 539
Query: 550 HEIWVCENQA 559
+ V E +
Sbjct: 540 DRLIVFEGEP 549
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP--------LDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
V +VGPNG GK+T +K++ G L+P D ++R + + + L +
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 448 SALQY---MIKEYPGNEEEKMRAA--IGRFGLTGKAQVM------PMKNLSDGQRSRVVF 496
QY + K G E ++ +G+F K + + LS G+ RV
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 239
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSHDFRLINQVAHEI 552
A R+ H DEP+++LDI +A + NE LV V HD +++ ++ I
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV-VEHDLAVLDYLSDVI 298
Query: 553 WV 554
V
Sbjct: 299 HV 300
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 163 VYERLEALDASTAEKR--AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
VYE L +D+S E+L LG + + D SGG R+A+A L + I
Sbjct: 434 VYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADI 492
Query: 221 LLLDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNII 267
LLDEP+ +LD+E + + ++ K ++ +V+ H ++ V +I
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 59/370 (15%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQ 256
SGG R+A+A AL DEP+++LD+ + + +++ + ++V+ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARF 316
L+ +++IH+ + Y G F + TR+ + N+ Q + E + + Y RF
Sbjct: 275 AVLD-YLSDVIHVVYGEPGVY-GIFSKPKGTRNGI--NEFLQGYLKDENV-RFRPYEIRF 329
Query: 317 GHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGY 376
KL+ + + +TL + R +VKD F+ ++ P ++ EV
Sbjct: 330 ----TKLSERVDVERETLVEYPR------LVKD-YGSFKL----EVEPGEIRKGEV---- 370
Query: 377 TPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH 436
+ +VGPNG GK+T +K++ G P +G V L +A
Sbjct: 371 -------------------IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKP 409
Query: 437 QHLAEKLDMDMSALQYMIKEYPGNE---EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
Q++ + + + L I N + ++ +G L + +++LS G+ R
Sbjct: 410 QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN----VEDLSGGELQR 465
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVA 549
V A R + LLDEP+ +LD+E +++ A+ + ++V HD +I+ V+
Sbjct: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS 525
Query: 550 HEIWVCENQA 559
+ V E +
Sbjct: 526 DRLIVFEGEP 535
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP--------LDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
V +VGPNG GK+T +K++ G L+P D ++R + + + L +
Sbjct: 106 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 165
Query: 448 SALQY---MIKEYPGNEEEKMRAA--IGRFGLTGKAQVM------PMKNLSDGQRSRVVF 496
QY + K G E ++ +G+F K + + LS G+ RV
Sbjct: 166 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 225
Query: 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSHDFRLINQVAHEI 552
A R+ H DEP+++LDI +A + NE LV V HD +++ ++ I
Sbjct: 226 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV-VEHDLAVLDYLSDVI 284
Query: 553 WV 554
V
Sbjct: 285 HV 286
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 163 VYERLEALDASTAEKR--AAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220
VYE L +D+S E+L LG + + D SGG R+A+A L + I
Sbjct: 420 VYELLSKIDSSKLNSNFYKTELLKPLGI-IDLYDRNVEDLSGGELQRVAIAATLLRDADI 478
Query: 221 LLLDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNII 267
LLDEP+ +LD+E + + ++ K ++ +V+ H ++ V +I
Sbjct: 479 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 27/202 (13%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG----------D 416
++ V+F Y D + K+++ + +VG NG+GK+TLLK++ G D
Sbjct: 12 IELNSVSFRYNGD-YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
Query: 417 LVPLDGMVRRHNHLRIAQ--FHQHLAEKLDMDMS-ALQYMIKEYPGNEEEKMRAAIGRF- 472
P D + R N + Q Q + ++ D++ +L+ M G +E +MR I +
Sbjct: 71 GSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM-----GLDESEMRKRIKKVL 125
Query: 473 ---GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAE 526
GL+G A P+ NLS GQ+ R+ A + R L LDEP + LD + I + E
Sbjct: 126 ELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLE 184
Query: 527 ALNEWDGGLVLVSHDFRLINQV 548
+L G++LV+H+ ++ +
Sbjct: 185 SLKNEGKGIILVTHELEYLDDM 206
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 21/243 (8%)
Query: 73 IRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLL-------TAIGEIEASD 125
I + S+S ++G ++ D E GK+TLL A GEI
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDG 71
Query: 126 MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLE--ALDASTAEKRAAEIL 183
+ ++ + + ++I+GA + E V LE LD S KR ++L
Sbjct: 72 SPADPFLLRKNVGYVFQNPSSQIIGATVE------EDVAFSLEIMGLDESEMRKRIKKVL 125
Query: 184 YGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA---CVWLEE 240
+G + + A + SGG + R+A+A L + L LDEP + LD + + E
Sbjct: 126 ELVGLS-GLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLE 184
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYK 300
+LK + +++++H ++L+ + I+H+ N + F G+++++V+ + E K
Sbjct: 185 SLKNEGKGIILVTHELEYLDDM-DFILHISNGTIDF-CGSWEEFVEREFDDVEIPFKWKL 242
Query: 301 WEQ 303
W++
Sbjct: 243 WKK 245
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 160 LERVYE---RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216
LE V E ++ L A +RA + L +G ++ Q K SGG + R+++ARAL +
Sbjct: 111 LENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 217 NPTILLLDEPTNHLDLE---ACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQ 273
P +LL DEPT+ LD E + + + L + + +VV++H F V +++I + +
Sbjct: 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 230
Query: 274 LK 275
++
Sbjct: 231 IE 232
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 37/197 (18%)
Query: 404 AGKSTLLKLMTGDLVPLDG----------MVR-RHNHLRIAQFHQ--HLAEKLDM----- 445
+GKST L+ + P +G +VR + L++A +Q L +L M
Sbjct: 43 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF 102
Query: 446 ----DMSALQYMIKEYP--------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493
M+ L+ ++ E P + E+ + + G+ +AQ +LS GQ+ R
Sbjct: 103 NLWSHMTVLENVM-EAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161
Query: 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDS---LAEALNEWDGGLVLVSHDFRLINQV-A 549
V A +P +LL DEPT+ LD E + + + L E +V+V+H+ V +
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221
Query: 550 HEIWVCENQAVTRWEGD 566
H I++ +Q EGD
Sbjct: 222 HVIFL--HQGKIEEEGD 236
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 39/235 (16%)
Query: 339 RGGLTE--KVVKDKVLVFRFVDVGKLPPPV---LQFVEVTFGYTP--DNLIYKNLDFGVD 391
RG E K++ +K + F G P + L+F + F Y + I K L+ V
Sbjct: 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVK 414
Query: 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-------RRHN--HLR-----IAQ--- 434
VALVG +G GKST ++LM PLDGMV R N +LR ++Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474
Query: 435 -FHQHLAEKL-----DMDMSALQYMIKEYPGNEEEKMRAAIGRF-GLTGKAQVMPMKNLS 487
F +AE + D+ M ++ +KE N + + +F L G+ LS
Sbjct: 475 LFATTIAENIRYGREDVTMDEIEKAVKE--ANAYDFIMKLPHQFDTLVGERGA----QLS 528
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG--LVLVSH 540
GQ+ R+ A R P +LLLDE T+ LD E+ + AL++ G ++++H
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+QF V F Y P + + L V +ALVG +G GKST+++L+ P+ G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 425 ----RRHNHLRIAQFHQHLA----EKLDMDMSALQYMIKEYPGNE-----EEKMRAA--- 468
+ L + L E + D S + + Y N EE +RAA
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI--AYGDNSRVVSYEEIVRAAKEA 1148
Query: 469 -IGRFGLTGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
I +F +P K LS GQ+ R+ A RQPH+LLLDE T+ LD
Sbjct: 1149 NIHQF-----IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 518 IETIDSLAEALNEWDGG--LVLVSHDFRLINQVAHEIWVCENQAV 560
E+ + EAL++ G ++++H I Q A I V +N V
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVIQNGKV 1247
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRI 248
T+ ++ SGG + RIA+ARAL NP ILLLDE T+ LD E+ ++ L K R
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 249 LVVISH 254
+VI+H
Sbjct: 578 TIVIAH 583
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVIS 253
K SGG + RIA+ARAL P ILLLDE T+ LD E+ ++E L K R +VI+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 254 HSQDFLNGVCTNIIHMQNKQLK 275
H + I+ +QN ++K
Sbjct: 1228 HRLSTIQN-ADLIVVIQNGKVK 1248
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 39/235 (16%)
Query: 339 RGGLTE--KVVKDKVLVFRFVDVGKLPPPV---LQFVEVTFGYTP--DNLIYKNLDFGVD 391
RG E K++ +K + F G P + L+F + F Y + I K L+ V
Sbjct: 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVK 414
Query: 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-------RRHN--HLR-----IAQ--- 434
VALVG +G GKST ++LM PLDGMV R N +LR ++Q
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474
Query: 435 -FHQHLAEKL-----DMDMSALQYMIKEYPGNEEEKMRAAIGRF-GLTGKAQVMPMKNLS 487
F +AE + D+ M ++ +KE N + + +F L G+ LS
Sbjct: 475 LFATTIAENIRYGREDVTMDEIEKAVKE--ANAYDFIMKLPHQFDTLVGERGA----QLS 528
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG--LVLVSH 540
GQ+ R+ A R P +LLLDE T+ LD E+ + AL++ G ++++H
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
+QF V F Y P + + L V +ALVG +G GKST+++L+ P+ G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 425 ----RRHNHLRIAQFHQHLA----EKLDMDMSALQYMIKEYPGNE-----EEKMRAA--- 468
+ L + L E + D S + + Y N EE +RAA
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI--AYGDNSRVVSYEEIVRAAKEA 1148
Query: 469 -IGRFGLTGKAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
I +F +P K LS GQ+ R+ A RQPH+LLLDE T+ LD
Sbjct: 1149 NIHQF-----IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 518 IETIDSLAEALNEWDGG--LVLVSHDFRLINQVAHEIWVCENQAV 560
E+ + EAL++ G ++++H I Q A I V +N V
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVIQNGKV 1247
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRI 248
T+ ++ SGG + RIA+ARAL NP ILLLDE T+ LD E+ ++ L K R
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 249 LVVISH 254
+VI+H
Sbjct: 578 TIVIAH 583
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 196 KTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVIS 253
K SGG + RIA+ARAL P ILLLDE T+ LD E+ ++E L K R +VI+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIA 1227
Query: 254 HSQDFLNGVCTNIIHMQNKQLK 275
H + I+ +QN ++K
Sbjct: 1228 HRLSTIQN-ADLIVVIQNGKVK 1248
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-A 433
G TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +
Sbjct: 19 GGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 75
Query: 434 QFHQHLAEKLDMDMSALQY-------MIKEYPGNEE-----EKMRAAIGRFGLTGKAQVM 481
QF + + ++ + Y +IK E+ EK +G G+T
Sbjct: 76 QFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT------ 129
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
LS GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 130 ----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 171
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 130 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 189
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276
E LKK D+IL++ S F +QN Q F
Sbjct: 190 EHLKKADKILILHEGSSYFYG----TFSELQNLQPDF 222
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 30/221 (13%)
Query: 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDL 417
+++F +V+F Y P+ + + L F + ALVGPNG+GKST+ L+ TG
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 418 VPLDG--MVRRHNHLRIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNEEEKMRAA---- 468
V LDG +V+ +H Q E L S + Y + P EE A
Sbjct: 76 VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGA 135
Query: 469 ---IGRFGLTGKAQVMPMKN-LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---I 521
I F +V N LS GQR V A R+P +L+LD+ T+ LD +
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV 195
Query: 522 DSLAEALNEWDGGLV-LVSHDFRLINQVAHEIW-----VCE 556
L EW V L++H L + H ++ VCE
Sbjct: 196 QRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCE 236
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRD-FSGGWRMRIALARALFINPTILLLDE 225
+E + A E A + + G + +T + SGG R +ALARAL P +L+LD+
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQ 182
Query: 226 PTNHLD----LEACVWLEETLKKFDRILVVISH 254
T+ LD L L E+ + R +++I+H
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITH 215
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L F + TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++
Sbjct: 41 LSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 427 HNHLRI-AQFH--------QHLAEKLDMDMSALQYMIKEYPGNEE-----EKMRAAIGRF 472
+ +QF +++ + D + +IK E+ EK +G
Sbjct: 98 SGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
G+T LS GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 158 GIT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 29/113 (25%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LEE 240
SGG R RI+LARA++ + + LLD P +LD+ E+CV E
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 221
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT-----GNFDQYVQTR 288
LKK D+IL++ S F +QN Q F + +FDQ+ R
Sbjct: 222 HLKKADKILILHEGSSYFYG----TFSELQNLQPDFSSKLMGCDSFDQFSAER 270
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-A 433
G TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +
Sbjct: 31 GGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 87
Query: 434 QFH----QHLAEKLDMDMSALQY----MIKEYPGNEE-----EKMRAAIGRFGLTGKAQV 480
QF + E + +S +Y +IK E+ EK +G G+T
Sbjct: 88 QFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----- 142
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
LS GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 143 -----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 184
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276
E LKK D+IL++ S F +QN Q F
Sbjct: 203 EHLKKADKILILHEGSSYFYG----TFSELQNLQPDF 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-A 433
G TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +
Sbjct: 19 GGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 75
Query: 434 QFH----QHLAEKLDMDMSALQY----MIKEYPGNEE-----EKMRAAIGRFGLTGKAQV 480
QF + E + +S +Y +IK E+ EK +G G+T
Sbjct: 76 QFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----- 130
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
LS GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 131 -----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276
E LKK D+IL++ S F +QN Q F
Sbjct: 191 EHLKKADKILILHEGSSYFYG----TFSELQNLQPDF 223
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 32/213 (15%)
Query: 396 VALVGPNGAGKSTLLKLMT-------GDLVPLDGM-----------VRRHNHLRIAQFH- 436
V ++GP+G+GKST L+ + G+++ +DG+ VR + +F+
Sbjct: 32 VVVIGPSGSGKSTFLRCLNLLEDFDEGEII-IDGINLKAKDTNLNKVREEVGMVFQRFNL 90
Query: 437 -QHLAEKLDMDMSALQYMIKEYPGNEEE-KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494
H+ ++ ++ ++ ++++P + E K + + GL KA P +LS GQ RV
Sbjct: 91 FPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGLKDKAHAYP-DSLSGGQAQRV 147
Query: 495 VFAWLAYRQPHMLLLDEPTNHLDIETID---SLAEALNEWDGGLVLVSHDFRLINQVAHE 551
A +P ++L DEPT+ LD E + S+ + L +V+V+H+ +V
Sbjct: 148 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 207
Query: 552 IWVCENQAVTRWEG---DIMDFKLHLKAKAGLS 581
+ + + EG D+ D H + KA LS
Sbjct: 208 VLFMDGGYIIE-EGKPEDLFDRPQHERTKAFLS 239
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
AE +A E+L +G A SGG R+A+ARAL + P I+L DEPT+ LD E
Sbjct: 115 AEAKAMELLDKVGLKDKAHAYPD-SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 173
Query: 235 CVWLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHM 269
+ +K+ +VV++H F V ++ M
Sbjct: 174 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 211
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 110 GKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169
GKSTL+ + +E E + D + L E+E+ A+ Q+ +++
Sbjct: 43 GKSTLIRCVNLLE----RPTEGSVLVDGQELTTLSESELTKARR-----QIGMIFQHFNL 93
Query: 170 LDASTA------------------EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211
L + T ++R E+L +G + + + SGG + R+A+A
Sbjct: 94 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIA 152
Query: 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR----ILVVISHSQDFLNGVCTNII 267
RAL NP +LL DE T+ LD + E LK +R +++I+H D + +C +
Sbjct: 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
Query: 268 HMQNKQL 274
+ N +L
Sbjct: 213 VISNGEL 219
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------------RR 426
N+ V ++G +GAGKSTL++ + P +G V RR
Sbjct: 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 82
Query: 427 HNHLRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMP 482
+I QH L+ + AL + P +E + ++ + GL K P
Sbjct: 83 ----QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLV 538
NLS GQ+ RV A P +LL DE T+ LD T S+ E L + + L +L+
Sbjct: 139 -SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLI 197
Query: 539 SHDFRLINQVAHEIWVCEN 557
+H+ ++ ++ + V N
Sbjct: 198 THEMDVVKRICDCVAVISN 216
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 109 CGKSTLLTAIGEIEASDMSSL--EAVISCDEER--LKLEKEAEILGAQEDGGGEQLERVY 164
CGK+T L I +E + E + D E+ KE ++ + VY
Sbjct: 43 CGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVY 102
Query: 165 E------RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
+ +L + +KR E+ LG + + +K R+ SGG R R+AL RA+ P
Sbjct: 103 DNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLN-RKPRELSGGQRQRVALGRAIIRRP 161
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHSQ 256
+ L DEP ++LD + V LKK R L + ++H Q
Sbjct: 162 KVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQ 203
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------------------RIAQFHQ 437
+ L+GP+G GK+T L+ + G P G + ++L + Q +
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQSYA 94
Query: 438 HLAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496
D A +++ P E ++++R GLT P + LS GQR RV
Sbjct: 95 LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP-RELSGGQRQRVAL 153
Query: 497 AWLAYRQPHMLLLDEPTNHLD 517
R+P + L DEP ++LD
Sbjct: 154 GRAIIRRPKVFLXDEPLSNLD 174
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 32/227 (14%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-------GDLVPLDGM----------- 423
+ K ++ + V ++GP+G+GKST L+ + G+++ +DG+
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII-IDGINLKAKDTNLNK 97
Query: 424 VRRHNHLRIAQFH--QHLAEKLDMDMSALQYMIKEYPGNEEE-KMRAAIGRFGLTGKAQV 480
VR + +F+ H+ ++ ++ ++ ++++P + E K + + GL KA
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID---SLAEALNEWDGGLVL 537
P +LS GQ RV A +P ++L DEPT+ LD E + S+ + L +V+
Sbjct: 156 YP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 214
Query: 538 VSHDFRLINQVAHEIWVCENQAVTRWEG---DIMDFKLHLKAKAGLS 581
V+H+ +V + + + EG D+ D H + KA LS
Sbjct: 215 VTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLFDRPQHERTKAFLS 260
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
AE +A E+L +G A SGG R+A+ARAL + P I+L DEPT+ LD E
Sbjct: 136 AEAKAMELLDKVGLKDKAHAYPD-SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194
Query: 235 CVWLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHM 269
+ +K+ +VV++H F V ++ M
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 44/206 (21%)
Query: 369 FVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPL 420
F V F Y P+ I K L F V+ +ALVGP+G GKST++ L+ G + +
Sbjct: 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138
Query: 421 DG-----MVRRHNHLRIAQFHQH-------LAEKL--DMDMSALQYM----------IKE 456
DG + H +IA Q +AE + +D S++ I
Sbjct: 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHN 1198
Query: 457 YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHL 516
+ E +G G LS GQ+ R+ A R P +LLLDE T+ L
Sbjct: 1199 FIAELPEGFETRVGDRG----------TQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248
Query: 517 DIETIDSLAEALNEWDGG--LVLVSH 540
D E+ + EAL+ G ++++H
Sbjct: 1249 DTESEKVVQEALDRAREGRTCIVIAH 1274
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 27/214 (12%)
Query: 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT------GDLVPLDGM 423
V T+ PD I + ++ V+ VALVG +G GKST++ L+ + +DG+
Sbjct: 421 VHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480
Query: 424 VRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-----YPGNEEEKMRAAIGRFGLTGKA 478
R +L +F + + + + I+E G E+M AA
Sbjct: 481 DVRDINL---EFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFI 537
Query: 479 QVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
+ +P LS GQ+ R+ A R P +LLLDE T+ LD E+ + +AL
Sbjct: 538 KTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597
Query: 529 NEWDGG--LVLVSHDFRLINQVAHEIWVCENQAV 560
++ G ++++H I A I C+N V
Sbjct: 598 DKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQV 630
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
GF + + T+ SGG + RIA+ARAL NP ILLLDE T+ LD E+ ++E L +
Sbjct: 1206 GFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264
Query: 246 -DRILVVISHS-QDFLNGVCTNII 267
R +VI+H +N C ++
Sbjct: 1265 EGRTCIVIAHRLNTVMNADCIAVV 1288
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ + SGG + RIA+ARAL NP ILLLDE T+ LD E+ +++ L K
Sbjct: 543 GYN-TLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 246 -DRILVVISH 254
R ++I+H
Sbjct: 602 KGRTTIIIAH 611
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 26/222 (11%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
L+F V F Y P+ I+++ + S ALVGP+G+GKST+L L+ P G +
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 425 RRHNH---------LR-----IAQ----FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466
H LR ++Q F +AE + + E E
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 467 A-AIGRFGLTGKAQVMPMKN--LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
A A R G V+ K LS GQ+ R+ A + P +LLLDE T+ LD E
Sbjct: 462 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 521
Query: 524 LAEALNE-WDGGLVLV-SHDFRLINQVAHEIWVCENQAVTRW 563
+ EAL+ DG VLV +H I A+ + V + +T +
Sbjct: 522 VQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEY 562
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
GFN T+ +K SGG + RIA+ARAL NP ILLLDE T+ LD E ++E L +
Sbjct: 472 GFN-TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530
Query: 246 -DRILVVISH 254
R ++VI+H
Sbjct: 531 DGRTVLVIAH 540
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 110 GKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169
GKSTL+ + +E E + D + L E+E+ A+ Q+ +++
Sbjct: 66 GKSTLIRCVNLLE----RPTEGSVLVDGQELTTLSESELTKARR-----QIGXIFQHFNL 116
Query: 170 LDASTA------------------EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211
L + T ++R E+L +G + + + SGG + R+A+A
Sbjct: 117 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIA 175
Query: 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR----ILVVISHSQDFLNGVCTNII 267
RAL NP +LL D+ T+ LD + E LK +R +++I+H D + +C +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVA 235
Query: 268 HMQNKQL 274
+ N +L
Sbjct: 236 VISNGEL 242
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------------RR 426
N+ V ++G +GAGKSTL++ + P +G V RR
Sbjct: 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARR 105
Query: 427 HNHLRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMP 482
+I QH L+ + AL + P +E + ++ + GL K P
Sbjct: 106 ----QIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 483 MKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VLV 538
NLS GQ+ RV A P +LL D+ T+ LD T S+ E L + + L +L+
Sbjct: 162 -SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220
Query: 539 SHDFRLINQVAHEIWVCEN 557
+H+ ++ ++ + V N
Sbjct: 221 THEXDVVKRICDCVAVISN 239
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 110 GKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169
GKSTL+ + +E E + D + L E+E+ A+ Q+ +++
Sbjct: 66 GKSTLIRCVNLLE----RPTEGSVLVDGQELTTLSESELTKARR-----QIGMIFQHFNL 116
Query: 170 LDASTA------------------EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211
L + T ++R E+L +G + + + SGG + R+A+A
Sbjct: 117 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIA 175
Query: 212 RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR----ILVVISHSQDFLNGVCTNII 267
RAL NP +LL D+ T+ LD + E LK +R +++I+H D + +C +
Sbjct: 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 235
Query: 268 HMQNKQL 274
+ N +L
Sbjct: 236 VISNGEL 242
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 31/200 (15%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------------R 425
N+ V ++G +GAGKSTL++ + P +G V R
Sbjct: 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 104
Query: 426 RHNHLRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVM 481
R +I QH L+ + AL + P +E + ++ + GL K
Sbjct: 105 R----QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL----VL 537
P NLS GQ+ RV A P +LL D+ T+ LD T S+ E L + + L +L
Sbjct: 161 P-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 538 VSHDFRLINQVAHEIWVCEN 557
++H+ ++ ++ + V N
Sbjct: 220 ITHEMDVVKRICDCVAVISN 239
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 26/222 (11%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424
L+F V F Y P+ I+++ + S ALVGP+G+GKST+L L+ P G +
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 425 RRHNH---------LR-----IAQ----FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466
H LR ++Q F +AE + + E E
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 467 A-AIGRFGLTGKAQVMPMKN--LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS 523
A A R G V+ K LS GQ+ R+ A + P +LLLDE T+ LD E
Sbjct: 493 AVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYL 552
Query: 524 LAEALNE-WDGGLVLV-SHDFRLINQVAHEIWVCENQAVTRW 563
+ EAL+ DG VLV +H I A+ + V + +T +
Sbjct: 553 VQEALDRLMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEY 593
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
GFN T+ +K SGG + RIA+ARAL NP ILLLDE T+ LD E ++E L +
Sbjct: 503 GFN-TVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 246 -DRILVVISH 254
R ++VI+H
Sbjct: 562 DGRTVLVIAH 571
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFHQHLA 440
+ K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +QF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 441 EKLDMDMSALQY-------MIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKNLSD 488
+ ++ + Y +IK E+ EK +G G+T LS+
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSE 162
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
GQ++++ A Y+ + LLD P +LD+ T + E+
Sbjct: 163 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 29/114 (25%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
S G + +I+LARA++ + + LLD P +LD+ E+CV
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT-----GNFDQYVQTR 288
E LKK D+IL++ S F +QN Q F + +FDQ+ R
Sbjct: 220 EHLKKADKILILHEGSSYFYG----TFSELQNLQPDFSSKLMGCDSFDQFSAER 269
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 11/155 (7%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFHQH 438
N + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++ + +QF
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 439 LAEKLDMDMSALQYMIKEYPGNEEE-KMRAAIGRFG-----LTGKAQVMPMKNLSDGQRS 492
+ + ++ + Y Y + +++ I +F + G+ V LS GQR+
Sbjct: 111 MPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV----TLSGGQRA 166
Query: 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
R+ A Y+ + LLD P +LD+ T + + E+
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 219
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQ---NKQLKFYTGNFDQYVQTR 288
E L+K D+IL ++ + G + + ++ + +L Y FDQ+ + R
Sbjct: 220 EHLRKADKIL-ILHQGSSYFYGTFSELQSLRPDFSSKLMGYD-TFDQFTEER 269
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
+L + ++R E+ LG + + +K R+ SGG R R+AL RA+ P + L+DE
Sbjct: 107 KLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 226 PTNHLDLEACVWLEETLKKFDRIL----VVISHSQ 256
P ++LD + V + LKK R L + ++H Q
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL---------------RIAQFHQHLAEK 442
L+GP+G GK+T L+++ G P G + + L IA Q A
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 443 LDM---DMSALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498
M D A +++ P E ++++R GLT P + LS GQR RV
Sbjct: 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVALGR 152
Query: 499 LAYRQPHMLLLDEPTNHLD 517
R+P + L+DEP ++LD
Sbjct: 153 AIVRKPQVFLMDEPLSNLD 171
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 50/235 (21%)
Query: 371 EVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT------GDLVPLDGM 423
+VTF Y + ++ F + VALVG +G+GKST+ L T + LDG
Sbjct: 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405
Query: 424 ---------VRRHNHL---RIAQFHQHLAEKL-----------DMDMSALQYMIKEYPGN 460
+RRH L + F+ +A + ++ +A Q E+ N
Sbjct: 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIEN 465
Query: 461 EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
+ + IG G +LS GQR RV A R +L+LDE T+ LD E+
Sbjct: 466 MPQGLDTVIGENG----------TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
Query: 521 IDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLH 573
++ AL+E + +++++H I Q A EI V + EG+I++ H
Sbjct: 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQ-ADEILVVD-------EGEIIERGRH 562
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 191 TMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRI 248
T+ + SGG R R+A+ARAL + +L+LDE T+ LD E+ ++ L + ++
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 249 LVVISH 254
++VI+H
Sbjct: 532 VLVIAH 537
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 374 FGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-RI 432
F Y +N +++ L+F ++ +A++G NG GKSTLL L+ G P+ G + + + +
Sbjct: 12 FYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFV 71
Query: 433 AQFHQ--HLAEKLDMDMSALQYMIKEY--PGNEEEKMRA-AIGRFGLTGKAQVMPMKNLS 487
QF LD+ + I + P + + ++ A+ LT A+ +LS
Sbjct: 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLS 130
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
GQR ++ A + ++LLDEPT+ LD+ D
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQD 165
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 189 NKTMQAKKT-RDFSGGWRMRIALARALFINPTILLLDEPTNHLDL---EACVWLEETLKK 244
N T AK+ SGG R I +ARA+ ++LLDEPT+ LDL + + L L +
Sbjct: 117 NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 245 FDRILVVIS-----------------HSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQT 287
+ VV + + Q+F G NI+ +N F+ F+Q Q
Sbjct: 177 SQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPMFEQQAQY 236
Query: 288 RSELEENQMKQYK 300
+ + + YK
Sbjct: 237 KESFFTHFVPLYK 249
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L F + TP + K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++
Sbjct: 41 LSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 427 HNHLRI-AQFHQHLAEKLDMDMSALQY-------MIKEYPGNEE-----EKMRAAIGRFG 473
+ +Q + + ++ + Y +IK E+ EK +G G
Sbjct: 98 SGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
+T LS GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 158 IT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 29/113 (25%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LEE 240
SGG R RI+LARA++ + + LLD P +LD+ E+CV E
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT-----GNFDQYVQTR 288
LKK D+IL++ S F +QN + F + +FDQ+ R
Sbjct: 221 HLKKADKILILHEGSSYFYG----TFSELQNLRPDFSSKLMGCDSFDQFSAER 269
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 97/234 (41%), Gaps = 31/234 (13%)
Query: 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDL 417
+++F +V+F Y P+ + + L F + ALVGPNG+GKST+ L+ TG
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 418 VPLDG--MVRRHNHLRIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNEEEKMRAA---- 468
V LDG +V+ +H Q E L S + Y + P EE A
Sbjct: 76 VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGA 135
Query: 469 ---IGRFGLTGKAQVMPMKN-LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---I 521
I F +V N LS GQR V A R+P +L+LD T+ LD +
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 522 DSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575
L EW VL+ + + AH I + EG + + HL+
Sbjct: 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLK-------EGSVCEQGTHLQ 242
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 167 LEALDASTAEKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
+E + A E A + + G G++ T + SGG R +ALARAL P +L+LD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 225 EPTNHLD-----------LEACVWLEETLKKFDRILVVISHSQDFL----NGVCTNIIHM 269
T+ LD E+ W T+ + L + + L VC H+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 270 Q 270
Q
Sbjct: 242 Q 242
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFH-- 436
N + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++ + +QF
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 437 --QHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG-----LTGKAQVMPMKNLSDG 489
+ E + +S +Y K + +++ I +F + G+ V LS G
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVV--KACQLQQDITKFAEQDNTVLGEGGV----TLSGG 164
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
QR+R+ A Y+ + LLD P +LD+ T + + E+
Sbjct: 165 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LEE 240
SGG R RI+LARA++ + + LLD P +LD+ E+CV E
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME 221
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQ---NKQLKFYTGNFDQYVQTR 288
L+K D+IL ++ + G + + ++ + +L Y FDQ+ + R
Sbjct: 222 HLRKADKIL-ILHQGSSYFYGTFSELQSLRPDFSSKLMGYD-TFDQFTEER 270
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
+L +++ A KRA E L + K SGG + R+A+ARAL NP
Sbjct: 105 ELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFD----RILVVISH 254
I+L DEPT LD + + + LKK + + +VV++H
Sbjct: 165 PIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 381 LIY--KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQH 438
+IY KN++ + V++ GP+G+GKST L ++ P +G V N ++
Sbjct: 17 IIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDN-IKTNDLDDD 75
Query: 439 LAEKLDMD--------------MSALQY----MIKEYPG---NEEEKMRA--AIGRFGLT 475
K+ D ++AL+ +I +Y G EE + RA + L
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE 135
Query: 476 GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNEWD 532
+ LS GQ+ RV A P ++L DEPT LD +T I L + LNE D
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 533 G-GLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564
G +V+V+HD + + I ++ V R E
Sbjct: 196 GKTVVVVTHDIN-VARFGERIIYLKDGEVEREE 227
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFH-- 436
N + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++ + +QF
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 437 --QHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG-----LTGKAQVMPMKNLSDG 489
+ E + +S +Y K + +++ I +F + G+ V LS G
Sbjct: 111 MPGTIKENIIFGVSYDEYRYKSVV--KACQLQQDITKFAEQDNTVLGEGGV----TLSGG 164
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
QR+R+ A Y+ + LLD P +LD+ T + + E+
Sbjct: 165 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LEE 240
SGG R RI+LARA++ + + LLD P +LD+ E+CV E
Sbjct: 162 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME 221
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQ---NKQLKFYTGNFDQYVQTR 288
L+K D+IL ++ + G + + ++ + +L Y FDQ+ + R
Sbjct: 222 HLRKADKIL-ILHQGSSYFYGTFSELQSLRPDFSSKLMGYD-TFDQFTEER 270
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFH---- 436
+ K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +QF
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 437 QHLAEKLDMDMSALQY----MIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKNLS 487
+ E + +S +Y +IK E+ EK +G G+T LS
Sbjct: 113 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LS 162
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
+GQ++++ A Y+ + LLD P +LD+ T + E+
Sbjct: 163 EGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 29/114 (25%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
S G + +I+LARA++ + + LLD P +LD+ E+CV
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT-----GNFDQYVQTR 288
E LKK D+IL++ S F +QN Q F + +FDQ+ R
Sbjct: 221 EHLKKADKILILHEGSSYFYG----TFSELQNLQPDFSSKLMGCDSFDQFSAER 270
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 356 FVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415
VD+ P +L+ + + LI ++ + VA++GPNGAGKSTLL+L+TG
Sbjct: 1 MVDMAVTPVALLEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
Query: 416 DLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSAL-QYMIKEYPGNEEEKMRAAIGRFGL 474
L P G HL + + L + + QY +P + E ++ +G
Sbjct: 60 YLSPSHG----ECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115
Query: 475 T----GKAQVMPMKN-----------LSDGQRSRVVFA------WLAYRQPHMLLLDEPT 513
+ QVM + LS G++ RV A W P L LDEPT
Sbjct: 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175
Query: 514 NHLDI----ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEI 552
+ LD+ T+ L + + + V HD L A I
Sbjct: 176 SALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI 218
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 195 KKTRDFSGGWRMRIALARALF------INPTILLLDEPTNHLDL 232
+ R SGG + R+ LAR L P L LDEPT+ LDL
Sbjct: 137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFH-- 436
N + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++ + +QF
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 437 ------QHLAEKLDMDMSALQYMIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKN 485
+++ + D + ++K ++ E+ +G G+T
Sbjct: 111 MPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT---------- 160
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
LS GQR+R+ A Y+ + LLD P +LD+ T + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQ---NKQLKFYTGNFDQYVQTR 288
E L+K D+IL ++ + G + + ++ + +L Y FDQ+ + R
Sbjct: 221 EHLRKADKIL-ILHQGSSYFYGTFSELQSLRPDFSSKLMGYD-TFDQFTEER 270
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 88/220 (40%), Gaps = 40/220 (18%)
Query: 372 VTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM-----------TGDLVPL 420
V F Y I +++ F +S +A GP+G GKST+ L+ T D P+
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 421 D-----------GMVRRHNHLRIAQFHQHLAEKLDMDMSALQY-------MIKEYPGNEE 462
D G V + + + ++L L+ D + + + N
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 463 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
+++ +G G+ +S GQR R+ A R P +L+LDE T LD E+
Sbjct: 127 DQLNTEVGERGV----------KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 523 SLAEALNEWDGGLVLVSHDFRLINQV-AHEIWVCENQAVT 561
+ +AL+ G + RL V A +I+ E +T
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG R R+A+ARA NP IL+LDE T LD E+ +++ L R +VI+H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFH-- 436
N + KN++ ++ +A+ G G+GK++LL L+ G+L +G+++ + +QF
Sbjct: 51 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 110
Query: 437 ------QHLAEKLDMDMSALQYMIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKN 485
+++ + D + ++K ++ E+ +G G+T
Sbjct: 111 MPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT---------- 160
Query: 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
LS GQR+R+ A Y+ + LLD P +LD+ T + + E+
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LE 239
SGG R RI+LARA++ + + LLD P +LD+ E+CV
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 240 ETLKKFDRILVVISHSQDFLNGVCTNIIHMQ---NKQLKFYTGNFDQYVQTR 288
E L+K D+IL ++ + G + + ++ + +L Y FDQ+ + R
Sbjct: 221 EHLRKADKIL-ILHQGSSYFYGTFSELQSLRPDFSSKLMGYD-TFDQFTEER 270
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 23/159 (14%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI-AQFHQHLA 440
+ K+++F ++ +A+ G GAGK++LL ++ G+L P +G ++ + +Q +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 441 EKLDMDMSALQY-------MIKEYPGNEE-----EKMRAAIGRFGLTGKAQVMPMKNLSD 488
+ ++ + Y +IK E+ EK +G G+T LS
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSG 162
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527
GQR+R+ A Y+ + LLD P +LD+ T + E+
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 29/113 (25%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL-------EACVW-------------LEE 240
SGG R RI+LARA++ + + LLD P +LD+ E+CV E
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 241 TLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYT-----GNFDQYVQTR 288
LKK D+IL++ S F +QN + F + +FDQ+ R
Sbjct: 221 HLKKADKILILHEGSSYFYG----TFSELQNLRPDFSSKLMGCDSFDQFSAER 269
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+
Sbjct: 128 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+
Sbjct: 134 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 174
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+ + + K
Sbjct: 128 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 186
Query: 246 -DRILVVISH 254
R +++I+H
Sbjct: 187 KGRTVIIIAH 196
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+ + + K
Sbjct: 134 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192
Query: 246 -DRILVVISH 254
R +++I+H
Sbjct: 193 KGRTVIIIAH 202
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 35/201 (17%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
N+DF + D V L+GP GAGKS L+L+ G + P G VR L A E+
Sbjct: 17 NVDFEMGRDYCV-LLGPTGAGKSVFLELIAGIVKPDRGEVR----LNGADITPLPPERRG 71
Query: 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGL------------------TGKAQVMPMK-- 484
+ Y + +P + A +GL G A ++ K
Sbjct: 72 IGFVPQDYAL--FPHLSVYRNIA----YGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125
Query: 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL----NEWDGGLVLVSH 540
LS G+R RV A QP +LLLDEP + +D++T L E L E+D ++ V+H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 541 DFRLINQVAHEIWVCENQAVT 561
D +A E+ V N +
Sbjct: 186 DLIEAAMLADEVAVMLNGRIV 206
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 186 LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETL--- 242
LG + K R SGG R R+ALARAL I P +LLLDEP + +DL+ L E L
Sbjct: 114 LGIAHLLDRKPAR-LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172
Query: 243 -KKFDRILVVISH 254
++FD ++ ++H
Sbjct: 173 QREFDVPILHVTH 185
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 176
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+ + + K
Sbjct: 130 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 188
Query: 246 -DRILVVISH 254
R +++I+H
Sbjct: 189 KGRTVIIIAH 198
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
+L +++ A+ KRA E L + K SGG + R+A+ARAL NP
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFD----RILVVISH 254
I+L D+PT LD + + + LKK + + +VV++H
Sbjct: 165 PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 379 DNLIY--KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH 436
+ +IY KN++ + V+++GP+G+GKST+L ++ P +G V N ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 437 QHLAEKLDMD--------------MSALQY----MIKEYPG---NEEEKMRA--AIGRFG 473
K+ D ++AL+ +I +Y G EE + RA +
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNE 530
L + LS GQ+ RV A P ++L D+PT LD +T I L + LNE
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 531 WDG-GLVLVSHDFRLINQVAHEIWVCENQAVTRWE 564
DG +V+V+HD + + I ++ V R E
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVEREE 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV- 424
+L+ E+ + Y+ K ++ + A++G NG GKSTL + G L P G +
Sbjct: 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 425 --------RRHNHLRIAQF---------HQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA 467
R +++ + +Q + + D+S +K +++
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 468 AIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI----ETIDS 523
A+ R G+ + P LS GQ+ RV A + +P +L+LDEPT LD E +
Sbjct: 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 524 LAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAV 560
L E E +++ +HD ++ ++V + V
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 192 MQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETLKKFDR 247
++ K T S G + R+A+A L + P +L+LDEPT LD E L E K+
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 248 ILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIA 307
+++ +H D + C N+ M+ + R L+ N K+ E+E I
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMK---------------EGRVILQGNP-KEVFAEKEVIR 239
Query: 308 SMKEYIARFGH 318
+ + R GH
Sbjct: 240 KVNLRLPRIGH 250
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 31/234 (13%)
Query: 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDL 417
+++F +V+F Y P+ + + L F + ALVGPNG+GKST+ L+ TG
Sbjct: 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 418 VPLDG--MVRRHNHLRIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNEEEKMRAA---- 468
V LDG +V+ +H Q E L S + Y + P EE A
Sbjct: 76 VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGA 135
Query: 469 ---IGRFGLTGKAQVMPMKN-LSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---I 521
I F +V N L+ GQR V A R+P +L+LD T+ LD +
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 522 DSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575
L EW VL+ + + AH I + EG + + HL+
Sbjct: 196 QRLLYESPEWASRTVLLITQQLSLAERAHHILFLK-------EGSVCEQGTHLQ 242
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 167 LEALDASTAEKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224
+E + A E A + + G G++ T + + G R +ALARAL P +L+LD
Sbjct: 123 MEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 225 EPTNHLD-----------LEACVWLEETLKKFDRILVVISHSQDFL----NGVCTNIIHM 269
T+ LD E+ W T+ + L + + L VC H+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 270 Q 270
Q
Sbjct: 242 Q 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG +G+GKSTL KL+ +P +G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ D+ T+ LD E+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYES 180
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ ++ SGG R RIA+ARAL NP IL+ D+ T+ LD E+ + + K
Sbjct: 134 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC 192
Query: 246 -DRILVVISH 254
R +++I+H
Sbjct: 193 KGRTVIIIAH 202
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 367 LQFVEVTFGYTPDN-LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F + F Y PD+ +I N++ + + +VG G+GKSTL KL+ +P +G V
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 426 RHNH-LRIA-------QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL--- 474
H L +A Q L + + ++ S + + PG EK+ A G
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 475 -----TGKAQVMPMK--NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520
G ++ + LS GQR R+ A P +L+ DE T+ LD E+
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 176
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF- 245
G+N T+ ++ SGG R RIA+ARAL NP IL+ DE T+ LD E+ + + K
Sbjct: 130 GYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 188
Query: 246 -DRILVVISH 254
R +++I+H
Sbjct: 189 KGRTVIIIAH 198
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 367 LQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DL----VP 419
L+F VTF Y + +N++ + VALVG +G+GKST+ L+T D+ +
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 420 LDGMVRRHNHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNE--EEKMRAAI--- 469
+DG R L ++A Q++ D + + Y E E EE R A
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 470 -------GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
G + G+ V+ LS GQR R+ A R +L+LDE T+ LD E+
Sbjct: 462 FINKMDNGLDTIIGENGVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 523 SLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCEN 557
++ AL+E + ++++H I Q A EI V E+
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVED 553
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 164 YERLEALDASTAEKRAAEILYGLGF-NK------TMQAKKTRDFSGGWRMRIALARALFI 216
Y R E E+ AA + Y + F NK T+ + SGG R RIA+ARAL
Sbjct: 439 YARTEEYSREQIEE-AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497
Query: 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
+ IL+LDE T+ LD E+ ++ L + +R +VI+H
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 84/162 (51%), Gaps = 14/162 (8%)
Query: 395 RVALVGPNGAGKSTLLKLMTGDLVP------LDGM-VRR-HNHLRIAQFHQHLAEKLDMD 446
+V ++GPNG+GK+TLL+ ++G L+P ++GM VR+ N++R + +L E ++
Sbjct: 32 KVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIR---YSTNLPEAYEIG 87
Query: 447 MSA--LQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504
++ + Y+ +E G + + + L + + LS GQ V + QP
Sbjct: 88 VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147
Query: 505 HMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLIN 546
++ LDEP ++D ++ + E+ +LV+H+ ++N
Sbjct: 148 EIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN 189
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222
+YE L+ LD E+L L + + +K S G + + + AL P I+
Sbjct: 96 LYEELKGLDRDLF----LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151
Query: 223 LDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFD 282
LDEP ++D + +K++ + ++++H D LN ++ + K F GN
Sbjct: 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLN------LYKEYKAY-FLVGNRL 204
Query: 283 QYVQTRSELEENQM 296
Q + SEL E+ +
Sbjct: 205 QGPISVSELLESSI 218
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 367 LQFVEVTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-------GDLV 418
++F VTF Y ++ +N++ + VALVG +G+GKST+ L+T G+++
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 419 PLDGMVRRHNHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNE--EEKMRAAI-- 469
+DG R L ++A Q++ D + + Y E E EE R A
Sbjct: 402 -MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAM 460
Query: 470 --------GRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETI 521
G + G+ V+ LS GQR R+ A R +L+LDE T+ LD E+
Sbjct: 461 DFINKMDNGLDTVIGENGVL----LSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Query: 522 DSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAV 560
++ AL+E + ++++H I + A EI V E+ +
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEK-ADEIVVVEDGVI 556
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 164 YERLEALDASTAEKRAAEILYGLGF-NK------TMQAKKTRDFSGGWRMRIALARALFI 216
Y R E E+ AA + Y + F NK T+ + SGG R RIA+ARAL
Sbjct: 439 YARTEQYSREQIEE-AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 217 NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
+ IL+LDE T+ LD E+ ++ L + +R +VI+H
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 26/192 (13%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------RRHNH 429
I K + V V+++G +G+GKSTLL ++ P +G V + +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 430 LR------IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA--IGRFGLTGKAQVM 481
LR + QFH +L +L + + M+K +E K R + GL K
Sbjct: 79 LRNRKLGFVFQFH-YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE---ALNEWDGGLVLV 538
P + LS G++ RV A +P +L DEPT +LD + + +NE +V+V
Sbjct: 138 PYE-LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196
Query: 539 SHDFRLINQVAH 550
+H+ R + ++ H
Sbjct: 197 THE-RELAELTH 207
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 73 IRIESLSVTFHGHDLIVDSELEXXXXXXXXXXXXXXCGKSTLLTAIGEIEASDMSSLEAV 132
+R E++ G++++ L GKSTLL +G ++A + +
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVF 62
Query: 133 ISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD------------ASTAEKRAA 180
+ E EKE +L ++ G Q + L AL+ A++R
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 181 EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
+L LG + ++K + SGG + R+A+ARAL P +L DEPT +LD
Sbjct: 123 YLLSELGLGDKL-SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218
+L +++ A+ KRA E L + K SGG + R+A+ARAL NP
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 219 TILLLDEPTNHLDLEACVWLEETLKKFD----RILVVISH 254
I+L D+PT LD + + + LKK + + +VV++H
Sbjct: 165 PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 30/195 (15%)
Query: 379 DNLIY--KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFH 436
+ +IY KN++ + V+++GP+G+GKST+L ++ P +G V N ++
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 437 QHLAEKLDMD--------------MSALQY----MIKEYPG---NEEEKMRA--AIGRFG 473
K+ D ++AL+ +I +Y G EE + RA +
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET---IDSLAEALNE 530
L + LS GQ+ RV A P ++L D+PT LD +T I L + LNE
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 531 WDG-GLVLVSHDFRL 544
DG +V+V+HD +
Sbjct: 194 EDGKTVVVVTHDINV 208
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
N++ ++ R ++GP+GAGK+T ++++ G VP G + + L +A + + D
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL-VASNGKLIVPPED 81
Query: 445 MDMSALQYMIKEYPG-NEEEKMRAAIGRFGLTGK---------AQVMPM--------KNL 486
+ + YP E + + ++ + A+++ + + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS----LAEALNEWDGGLVLVSHDF 542
S GQ+ RV A + P +LLLDEP ++LD DS + E + L++VSHD
Sbjct: 142 SGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 543 RLINQVAHEIWVC 555
I +A + V
Sbjct: 202 ADIFAIADRVGVL 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETLKKFDRILVVIS 253
R+ SGG + R+ALARAL +P++LLLDEP ++LD A ++E + L+V+S
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 254 H 254
H
Sbjct: 199 H 199
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225
R + EKR EI L + + K T+ SGG + R+ALARAL P +LL DE
Sbjct: 101 RARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDE 159
Query: 226 PTNHLDLEACVWLEETLKKFDRIL----VVISHSQ 256
P ++LD + + +K + L V ++H Q
Sbjct: 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL---------RIAQFHQHLAEKLDMD 446
VAL+GP+G GK+T L ++ G P G + + L + Q+ A M
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 447 M---SALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503
+ A + +E EK I R L LS GQ+ RV A +Q
Sbjct: 92 VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151
Query: 504 PHMLLLDEPTNHLD 517
P +LL DEP ++LD
Sbjct: 152 PKVLLFDEPLSNLD 165
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 38/179 (21%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPL 420
++F V F Y +++ F V +ALVGP+GAGKST+L+L+ + + +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 421 DG-------MVRRHNHLRIAQ-----FHQHLAEKL----------DMDMSALQYMIKEYP 458
DG +H+ + F+ +A+ + +++ +A I +
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI 173
Query: 459 GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
E R +G GL LS G++ RV A + P ++LLDE T+ LD
Sbjct: 174 MAFPEGYRTQVGERGL----------KLSGGEKQRVAIARTILKAPGIILLDEATSALD 222
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 190 KTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DR 247
+T ++ SGG + R+A+AR + P I+LLDE T+ LD ++ +L K +R
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 248 ILVVISH 254
+V++H
Sbjct: 241 TTIVVAH 247
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 17/212 (8%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQ---- 437
I K + F ++ L+GPNGAGK+T L++++ + P G+V + + H+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 438 --HLAEKLDM--DMSALQYM-----IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488
+L E+ +M ++Y+ +E E+M G+ + S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE--WDGGLVLV-SHDFRLI 545
G +++ A P + +LDEPT+ LD+ + + L + +G +LV SH+ +
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209
Query: 546 NQVAHEIWVCENQAVTRWEGDIMDFKLHLKAK 577
+ I + N + G + + K KA+
Sbjct: 210 EFLCDRIALIHNGTIVET-GTVEELKERYKAQ 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 177 KRAAEILYGLGFNKTMQAKKTRD----FSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
+RA EI GLG +K +D +S G ++ +ARAL +NP + +LDEPT+ LD+
Sbjct: 128 ERATEI-AGLG-------EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
Query: 233 EACVWLEETLKKFDR---ILVVISHSQDFLNGVCTNIIHMQN 271
+ + LK+ + ++V SH+ + +C I + N
Sbjct: 180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN 221
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHS 255
SGG R R+A+ARA+ + P +LL+DEP ++LD + V + +KK + L + ++H
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 256 Q 256
Q
Sbjct: 202 Q 202
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHL----- 430
NL K+ +F + L+GP+G GK+T L+++ G P +G + R +L
Sbjct: 31 NLTIKDGEF-------LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR 83
Query: 431 RIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNL 486
I+ Q A M + A IK++P +E ++++R A + P + L
Sbjct: 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-L 142
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
S GQR RV A +P +LL+DEP ++LD
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL----VVISHS 255
SGG R R+A+ARA+ + P +LL+DEP ++LD + V + +KK + L + ++H
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 256 Q 256
Q
Sbjct: 203 Q 203
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 21/151 (13%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV----RRHNHL----- 430
NL K+ +F + L+GP+G GK+T L+++ G P +G + R +L
Sbjct: 32 NLTIKDGEF-------LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR 84
Query: 431 RIAQFHQHLAEKLDMDMS---ALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNL 486
I+ Q A M + A IK++P +E ++++R A + P + L
Sbjct: 85 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-L 143
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
S GQR RV A +P +LL+DEP ++LD
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILV 250
+K + SGG R R+A+ R L P++ LLDEP ++LD ++ + + K+ R ++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 251 VISHSQ 256
++H Q
Sbjct: 189 YVTHDQ 194
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 44/165 (26%)
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-----------------DLVPLD-- 421
++ K+++ + V VGP+G GKSTLL+++ G D P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 422 -GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV 480
GMV + L H +AE + + + G ++E + + + A+V
Sbjct: 77 VGMVFQSYALYP---HLSVAENMSFGL--------KLAGAKKEVINQRVNQV-----AEV 120
Query: 481 MPM--------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+ + K LS GQR RV +P + LLDEP ++LD
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILV 250
+K + SGG R R+A+ R L P++ LLDEP ++LD ++ + + K+ R ++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 251 VISHSQ 256
++H Q
Sbjct: 189 YVTHDQ 194
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 44/165 (26%)
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-----------------DLVPLD-- 421
++ K+++ + V VGP+G GKSTLL+++ G D P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 422 -GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV 480
GMV + L H +AE + + + G ++E + + + A+V
Sbjct: 77 VGMVFQSYALYP---HLSVAENMSFGL--------KLAGAKKEVINQRVNQV-----AEV 120
Query: 481 MPM--------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+ + K LS GQR RV +P + LLDEP ++LD
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 367 LQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT------GDLV 418
++F +V F Y ++ K+++F + + ALVG G+GKST+ KL+ GD+
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 419 PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI--KEYPGNEEEKMRAAIGRFGLTG 476
V ++N I + + + ++Y I + +EE ++A L
Sbjct: 78 IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKAT-KSAQLYD 136
Query: 477 KAQVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+ +P K LS G+R R+ A + P +++ DE T+ LD +T +
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 527 ALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTR 562
A+ + + L++++H I+ I + + + V +
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 163 VYERLEALDASTAEKRAAEILYGL--GFNK---TMQAKKTRDFSGGWRMRIALARALFIN 217
+Y +L+A D + + LY K T+ K SGG R RIA+AR L +
Sbjct: 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173
Query: 218 PTILLLDEPTNHLDLEACVWLE---ETLKKFDRILVVISH 254
P I++ DE T+ LD + + E L+K +R L++I+H
Sbjct: 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH 212
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444
N++ ++ R ++GP+GAGK+T ++++ G VP G + + L +A + + D
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL-VASNGKLIVPPED 81
Query: 445 MDMSALQYMIKEYPG-NEEEKMRAAIGRFGLTGK---------AQVMPM--------KNL 486
+ + YP E + + ++ + A+++ + + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141
Query: 487 SDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS----LAEALNEWDGGLVLVSHDF 542
S Q+ RV A + P +LLLDEP ++LD DS + E + L++VSHD
Sbjct: 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201
Query: 543 RLINQVAHEIWVC 555
I +A + V
Sbjct: 202 ADIFAIADRVGVL 214
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLDL----EACVWLEETLKKFDRILVVIS 253
R+ SG + R+ALARAL +P++LLLDEP ++LD A ++E + L+V+S
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 254 H 254
H
Sbjct: 199 H 199
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 26/177 (14%)
Query: 109 CGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDG------GGEQLER 162
CGKS+LL+A+ ++M +E ++ + ++A I Q D G QLE
Sbjct: 42 CGKSSLLSAL----LAEMDKVEGHVAIKGSVAYVPQQAWI---QNDSLRENILFGCQLEE 94
Query: 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222
Y R ++ + A EIL ++T +K + SGG + R++LARA++ N I L
Sbjct: 95 PYYR--SVIQACALLPDLEIL--PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150
Query: 223 LDEPTNHLD-------LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNK 272
D+P + +D E + + LK RILV +HS +L V I+ K
Sbjct: 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV--THSMSYLPQVDVIIVMSGGK 205
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 21/185 (11%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQH 438
D + F + + VA+VG G GKS+LL + ++ ++G H+ I +
Sbjct: 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG------HVAIKGSVAY 70
Query: 439 LAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK----------NLSD 488
+ ++ + +L+ I EE R+ I L +++P NLS
Sbjct: 71 VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSG 130
Query: 489 GQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGL-----VLVSHDFR 543
GQ+ RV A Y + L D+P + +D + E + G L +LV+H
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190
Query: 544 LINQV 548
+ QV
Sbjct: 191 YLPQV 195
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVR-----------RHNHLRIAQF--HQHLAEKLD 444
+ G G+GKSTLL+++ G + P G V R N Q+ Q AE++
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV- 96
Query: 445 MDMSALQYMIKE-YPGNEEEKM-RAAIGRFGLTGKA--QVMPMKNLSDGQRSRVVFAWLA 500
+ + +K YP + + + A+ GL + +P LS G++ RV A +
Sbjct: 97 --FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVI 153
Query: 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---GLVLVSHDFR-LINQVAHEIWVCE 556
+P +L+LDEP LD E L + +W ++L+SHD +IN V + + +
Sbjct: 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK 213
Query: 557 NQAVTRWEGDIMDF 570
+ V ++G M+F
Sbjct: 214 GKKV--FDGTRMEF 225
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
D K+A E + GL F+ + + + SGG + R+A+A + P IL+LDEP L
Sbjct: 112 DPVPLVKKAMEFV-GLDFD-SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 231 DLEA---CVWLEETLKKFDRILVVISH 254
D E + + E K + +++ISH
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISH 196
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 25/201 (12%)
Query: 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHNHLRIAQF 435
N++ + +AL+GP+G+GKSTLL + G P G + +
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 436 HQHLAEKLDMDMS---ALQYMIKEYPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQR 491
Q+ A M + A +++ P E ++K+R + P + LS GQ+
Sbjct: 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ-LSGGQQ 139
Query: 492 SRVVFAWLAYRQPHMLLLDEPTNHLD----IETIDSLAEALNEWDGGLVLVSHDFRLINQ 547
RV A ++P +LLLDEP ++LD +E L E V V+HD
Sbjct: 140 QRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD------ 193
Query: 548 VAHEIWVCENQAVTRWEGDIM 568
A + + + AV R EG+I+
Sbjct: 194 QAEALAMADRIAVIR-EGEIL 213
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILVVISHS 255
SGG + R+A+ARAL P +LLLDEP ++LD LE L+ K+ V ++H
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 256 Q 256
Q
Sbjct: 194 Q 194
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 27/194 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVR-----------RHNHLRIAQF--HQHLAEKLD 444
+ G G+GKSTLL+++ G + P G V R N Q+ Q AE++
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV- 98
Query: 445 MDMSALQYMIKE-YPGNEEEKM-RAAIGRFGLTGKA--QVMPMKNLSDGQRSRVVFAWLA 500
+ + +K YP + + + A+ GL + +P LS G++ RV A +
Sbjct: 99 --FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVI 155
Query: 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEWDG---GLVLVSHDFR-LINQVAHEIWVCE 556
+P +L+LDEP LD E L + +W ++L+SHD +IN V + + +
Sbjct: 156 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK 215
Query: 557 NQAVTRWEGDIMDF 570
+ V ++G M+F
Sbjct: 216 GKKV--FDGTRMEF 227
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230
D K+A E + GL F+ + + + SGG + R+A+A + P IL+LDEP L
Sbjct: 114 DPVPLVKKAMEFV-GLDFD-SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 171
Query: 231 DLEA---CVWLEETLKKFDRILVVISH 254
D E + + E K + +++ISH
Sbjct: 172 DREGKTDLLRIVEKWKTLGKTVILISH 198
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 389 GVDLD----SRVALVGPNGAGKSTLLKLMTGDLVP----LDGMV---------RRHNHLR 431
G+ LD S A+VG + +GKST+++ MT L P L G V R LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 432 ------IAQFHQHLAEKLDMDMSALQYMI------------KEYPGNEEEKMRAAIGRFG 473
IA Q + L+ M +++ E EK+R R
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMV--RLN 143
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEALN 529
P++ LS G + RV+ A P +L+LDEPT+ LD+ T I L E
Sbjct: 144 PEAVLNSYPLQ-LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 530 EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571
L+ V+HD + ++A ++ V + + FK
Sbjct: 203 MLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDL 232
SGG + R+ +A AL ++P +L+LDEPT+ LD+
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDV 187
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD----LEACVWLEETLKKFDRILV 250
+K + SGG R R+A+ R L P++ LLD+P ++LD ++ + + K+ R ++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 251 VISHSQ 256
++H Q
Sbjct: 189 YVTHDQ 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 44/165 (26%)
Query: 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-----------------DLVPLD-- 421
++ K+++ + V VGP+G GKSTLL+++ G D P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 422 -GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV 480
GMV + L H +AE + + + G ++E + + + A+V
Sbjct: 77 VGMVFQSYALYP---HLSVAENMSFGL--------KLAGAKKEVINQRVNQV-----AEV 120
Query: 481 MPM--------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
+ + K LS GQR RV +P + LLD+P ++LD
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 201 SGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISH 254
SGG + R+++AR NP IL+LDE T+ LDLE+ ++E L DR ++++H
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 42/217 (19%)
Query: 372 VTFGYTPDNL-IYKNLDFGVDLDSRVALVGPNGAGKSTLLKL------------------ 412
V+F Y + I K+++ ++ VA VG +G GKSTL+ L
Sbjct: 345 VSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404
Query: 413 ----MTGDLVPLDGMVRRHNHLRIAQFHQHL------AEKLDMDMSALQYMIKEYPGNEE 462
+TG L G+V++ N L +++ A ++ +A ++ N
Sbjct: 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 463 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETID 522
+ +G G+ LS GQ+ R+ A + P +L+LDE T+ LD+E+
Sbjct: 465 QGYDTEVGERGV----------KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 523 SLAEALN--EWDGGLVLVSHDFRLINQVAHEIWVCEN 557
+ EAL+ D ++V+H I A +I V EN
Sbjct: 515 IIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 550
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 25/221 (11%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV-- 424
++FV V Y + + F + V L+GP+G+GK+T+L+L+ G P G V
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 425 ----------RRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE-EEKMRAAIGRFG 473
++ N + Q + D + K P +E + ++R +
Sbjct: 75 GGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR 134
Query: 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL----AEALN 529
L A P LS GQ+ RV A +P +LL DEP +D + L + +
Sbjct: 135 LESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193
Query: 530 EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDF 570
E V V+HD +VA + V EG++ F
Sbjct: 194 EMGVTSVFVTHDQEEALEVADRVLVLH-------EGNVEQF 227
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRIL--------V 250
+ SGG + R+ALARAL P +LL DEP +D + + L+ F R + V
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSV 200
Query: 251 VISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284
++H Q+ + + ++ L + GN +Q+
Sbjct: 201 FVTHDQE-------EALEVADRVLVLHEGNVEQF 227
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 87/187 (46%), Gaps = 23/187 (12%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVP----------LDGMVRRHNHLRIAQFHQHLAE---K 442
+ ++G NG GK+T+LK++ G+++P D +++R I + + L K
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN--------LSDGQRSRV 494
+ + ++Y K G E + R +++ M N LS G R+
Sbjct: 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147
Query: 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEI 552
+ A R+ + + D+P+++LD+ ++A+A+ E + +++V HD +++ + I
Sbjct: 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLI 207
Query: 553 WVCENQA 559
+ ++
Sbjct: 208 HIIYGES 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------RI-----AQFHQHLAEKLD 444
+ ++GPNG GK+T +++ G++ +G V + RI Q+L
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASK 356
Query: 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504
+S + EE R + R + + +LS G+ ++ A ++
Sbjct: 357 DALSTSSWFF------EEVTKRLNLHRLLESN------VNDLSGGELQKLYIAATLAKEA 404
Query: 505 HMLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQ 558
+ +LD+P+++LD+E +A+A+ E ++ HD + + +A I V + +
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQD 257
SGG R+ +A +L + + D+P+++LD+ + + + +++ ++ ++V+ H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 258 FLNGVCTNIIHM 269
L+ T++IH+
Sbjct: 199 VLD-YLTDLIHI 209
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDR----ILVVISH 254
D SGG ++ +A L + +LD+P+++LD+E + + +K+ R + +I H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 255 SQDFLNGVCTNII 267
+ + II
Sbjct: 445 DLSIHDYIADRII 457
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLD 231
SGG + R+ALARAL NP ILLLDEP + LD
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 29/169 (17%)
Query: 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV------------RRH 427
N NL V+ ++GP GAGK+ L+L+ G VP G + +H
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 428 NHLRIAQFHQ---HLAEKLDMDMSALQYMIKE----YPGNEEEKMRAAIGRFGLTGKAQV 480
+ + Q + H+ K +++ IK+ + K+ + R LT
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT----- 127
Query: 481 MPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN 529
LS G++ RV A P +LLLDEP + LD T ++ E L+
Sbjct: 128 -----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-------GDLVP 419
++F V F Y + K++ F + +VALVGP G+GK+T++ L+ G ++
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL- 413
Query: 420 LDGM-VR--RHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTG 476
+DG+ +R + + LR + L + + + + + PG +E+++ A
Sbjct: 414 VDGIDIRKIKRSSLR-SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472
Query: 477 KAQVMPM----------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE 526
+ +P ++LS GQR + P +L+LDE T+++D +T S+
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 527 AL 528
A+
Sbjct: 533 AM 534
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 199 DFSGGWRMRIALARALFINPTILLLDEPTNHLD------LEACVW 237
D S G R +A+ RA NP IL+LDE T+++D ++A +W
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 24/181 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLV----------PLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
LVGPNGAGKSTLL M G PL+ L A Q +
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ--QTPPFAT 88
Query: 448 SALQYM-IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL------- 499
Y+ + ++ E + G L K LS G+ RV A +
Sbjct: 89 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQ 147
Query: 500 AYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
A +LLLD+P N LD+ +D + AL++ +V+ SHD + AH W+ +
Sbjct: 148 ANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK 207
Query: 557 N 557
Sbjct: 208 G 208
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 194 AKKTRDFSGGWRMRIALARALF-----INPT--ILLLDEPTNHLDLEACVWLEETLKKFD 246
+ T SGG R+ LA + NP +LLLD+P N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS 180
Query: 247 RILVVISHSQDFLN 260
+ + I S LN
Sbjct: 181 QQGLAIVMSSHDLN 194
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 69/180 (38%), Gaps = 24/180 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLV----------PLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
LVGPNGAGKSTLL G PL+ L A Q +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ--QTPPFAT 88
Query: 448 SALQYM-IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL------- 499
Y+ + ++ E + G L K LS G+ RV A +
Sbjct: 89 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQ 147
Query: 500 AYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
A +LLLDEP N LD+ +D + AL++ +V SHD + AH W+ +
Sbjct: 148 ANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLK 207
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 194 AKKTRDFSGGWRMRIALARALF-----INPT--ILLLDEPTNHLDLEACVWLEETLKKFD 246
+ T SGG R+ LA + NP +LLLDEP N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 247 RILVVISHSQDFLN 260
+ + I S LN
Sbjct: 181 QQGLAIVXSSHDLN 194
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLV----------PLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
LVGPNGAGKSTLL G PL+ L A Q +
Sbjct: 31 LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ--QTPPFAT 88
Query: 448 SALQYM-IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL------- 499
Y+ + ++ E + G L K LS G+ RV A +
Sbjct: 89 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQ 147
Query: 500 AYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
A +LLLDEP N LD+ +D + AL + +V SHD + AH W+ +
Sbjct: 148 ANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLK 207
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 194 AKKTRDFSGGWRMRIALARALF-----INPT--ILLLDEPTNHLDLEACVWLEETLKKF- 245
+ T SGG R+ LA + NP +LLLDEP N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 246 DRILVVISHSQDF 258
+ L ++ S D
Sbjct: 181 QQGLAIVXSSHDL 193
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 36/191 (18%)
Query: 385 NLDFGVDLDSRV-ALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443
N++ G DS + ++G NG GK+TL+KL+ G L P +G Q + KL
Sbjct: 369 NVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG--------------QDIP-KL 413
Query: 444 DMDMSALQYMIKEYPGNEEEKMRAAI-GRFGLTGKAQ---VMPMK----------NLSDG 489
++ M Q + ++PG + I G+F L + Q V P++ +LS G
Sbjct: 414 NVSMKP-QKIAPKFPGTVRQLFFKKIRGQF-LNPQFQTDVVKPLRIDDIIDQEVQHLSGG 471
Query: 490 QRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLI 545
+ RV + L+DEP+ +LD E ++ + + +V HDF +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531
Query: 546 NQVAHEIWVCE 556
+A ++ V E
Sbjct: 532 TYLADKVIVFE 542
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 396 VALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-------NHLRIAQFHQHLAEKLDMDMS 448
+ LVG NG GKST LK++ G P G + R ++ + + L+ D+
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 449 ALQYMIKEYPGNEEEKMRAAIGRFG-------------LTGKAQVMPMKN--------LS 487
A+ + +Y N ++ + + G + +++ ++N LS
Sbjct: 166 AI--IKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLS 223
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGG---LVLVSHDFRL 544
G+ R ++ + + DEP+++LD++ + A+ + ++ V HD +
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSV 283
Query: 545 INQVAHEIWVC 555
++ ++ +VC
Sbjct: 284 LDYLSD--FVC 292
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245
SGG R+A+ AL I I L+DEP+ +LD E + + +++F
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 371 EVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLK-----LMTGDLVPLDGMV 424
++T YT N I +N+ F + RV L+G G+GKSTLL L T + +DG+
Sbjct: 24 DLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGV- 82
Query: 425 RRHNHLRIAQFHQH---LAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM 481
+ + + Q+ + + +K+ + + + + ++++ GL +
Sbjct: 83 -SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 482 PMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
P K LS G + + A + +LLLDEP+ HLD T + L +
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK-FDRILVVISHSQDF 258
S G + + LAR++ ILLLDEP+ HLD + TLK+ F V++ ++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 259 LNGVCTNIIHMQNKQLKFYTGNFDQY 284
C + ++ +++ Y + Y
Sbjct: 216 AMLECDQFLVIEENKVRQYDSILELY 241
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 70/181 (38%), Gaps = 24/181 (13%)
Query: 398 LVGPNGAGKSTLLKLMTGDLV----------PLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447
LVGPNGAGKSTLL M G PL+ L A Q +
Sbjct: 31 LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ--QTPPFAT 88
Query: 448 SALQYM-IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL------- 499
Y+ + ++ E + G L K LS G+ RV A +
Sbjct: 89 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQ 147
Query: 500 AYRQPHMLLLDEPTNHLDI---ETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556
A +LLLD+P LD+ +D + AL++ +V+ SHD + AH W+ +
Sbjct: 148 ANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK 207
Query: 557 N 557
Sbjct: 208 G 208
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM------TGDLVPLDG-----------MV 424
I K + + + + L G NGAGK+TLL ++ T V L G V
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 425 RRH----NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA---IGRFGLTGK 477
R+H +H + +F Q +D+ +S I Y ++E A + G + K
Sbjct: 96 RQHIGFVSHSLLEKF-QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 478 AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD 517
AQ + LS G++ RV A QP +L+LDEP LD
Sbjct: 155 AQ-QYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234
S G + R+ +ARAL P +L+LDEP LD A
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIA 196
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQ 256
FSGG + R + + + P + +LDE + LD++A + + +L+ R ++++H Q
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQ 305
L+ + + +H+ + +G+F Q LEE + Y W EQ
Sbjct: 225 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ----LEE---QGYGWLTEQ 266
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVR-RHNHLRIAQF 435
D I + L V A++GPNG+GKSTL + G D G V + L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEE-------------KMRAAIGRFGLTG----KA 478
E + M A QY + E PG + + + + RF K
Sbjct: 92 EDRAGEGIFM---AFQYPV-EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 479 QVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
++ M S G++ R +A +P + +LDE + LDI+ + +A+ +
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 529 NEWDGG---LVLVSHDFRLINQV 548
N G ++V+H R+++ +
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYI 230
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE---TLKKFDRILVVISHSQ 256
FSGG + R + + + P + +LDE + LD++A + + +L+ R ++++H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 205
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQ 305
L+ + + +H+ + +G+F Q LEE + Y W EQ
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ----LEE---QGYGWLTEQ 247
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVR-RHNHLRIAQF 435
D I + L V A++GPNG+GKSTL + G D G V + L
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 436 HQHLAEKLDMDMSALQYMIKEYPGNEEE-------------KMRAAIGRFGLTG----KA 478
E + M A QY + E PG + + + + RF K
Sbjct: 73 EDRAGEGIFM---AFQYPV-EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 128
Query: 479 QVMPMK----------NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528
++ M S G++ R +A +P + +LDE + LDI+ + +A+ +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 529 NEWDGG---LVLVSHDFRLINQV 548
N G ++V+H R+++ +
Sbjct: 189 NSLRDGKRSFIIVTHYQRILDYI 211
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 198 RDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231
R+FSGG + R+++ARAL P +L+LD+ T+ +D
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 367 LQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425
+ F V F Y + + + ++F V S VA++G G+GKSTL+ L+ + P G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 426 RH----NHLRIAQFHQHLAEKLDMDMSALQYMIKEY------PGNEEEKMRAA----IGR 471
+++ H++ + + IKE ++E + AA I
Sbjct: 402 VDELDVRTVKLKDLRGHIS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 472 F------GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA 525
F G + + +N S GQ+ R+ A ++P +L+LD+ T+ +D T +
Sbjct: 461 FIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519
Query: 526 EALNEWDGG 534
+ L + G
Sbjct: 520 DGLKRYTKG 528
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 163 VYERLEALDASTAEKRAAEILY--GLGFNKTMQAKKTRDFSGGWRMRIALARALF---IN 217
V E LE + KR ++L+ GLG+ K Q T SGG RI LA L
Sbjct: 769 VDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATT--LSGGEAQRIKLASELRKRDTG 826
Query: 218 PTILLLDEPTNHLDLEACVWLEETLKKF-DR--ILVVISHSQDFL 259
T+ +LDEPT L E L E L + DR ++VI H+ D +
Sbjct: 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVI 871
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF--INPTILLLDEPTNHLDLE 233
EKR E L +G ++ SGG RI LA + + I +LDEPT L
Sbjct: 442 EKRL-EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPR 500
Query: 234 ACVWLEETLKKFDRI---LVVISHSQDFL 259
L +TLKK + ++V+ H ++ +
Sbjct: 501 DTERLIKTLKKLRDLGNTVIVVEHDEEVI 529
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 425 RRHNH--LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP 482
+R+N L I +++++ LDM + K P + + + GL P
Sbjct: 745 KRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIK--RTLQVLHDVGLGYVKLGQP 802
Query: 483 MKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW-DGG--LV 536
LS G+ R+ A ++ + +LDEPT L E + L E L+ D G ++
Sbjct: 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862
Query: 537 LVSHDFRLINQVAHEI 552
++ H+ +I H I
Sbjct: 863 VIEHNLDVIKNADHII 878
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 302 EQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGK 361
E + +S+K++ +F + + ++ Q K L ME+ T +V DK + +GK
Sbjct: 87 EGDHASSLKDHYHKFTNATFVCTKKCQEHLKILYGMEKA--TWLIVDDKYTL----KIGK 140
Query: 362 -----LPPPVLQFVEVTFGYTP-DNLIYKNLDFG 389
+P P+L + + TF Y P D +++ N FG
Sbjct: 141 RTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFG 174
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 43/201 (21%)
Query: 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--------VPLDGMVRRHNHLRIA 433
I K ++ V AL+GPNGAGKSTL K++ GD + LDG N L ++
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----ENILELS 73
Query: 434 QFHQHLAEKLDMDMSALQYMIKEYPGNE-----EEKMRAAIGR-FGL----TGKAQVMPM 483
+ + L + A QY + E PG ++A +GR G+ T + + +
Sbjct: 74 P-DERARKGLFL---AFQYPV-EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL 128
Query: 484 -------------KNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530
+ S G++ R L +P +LDE + LDI+ + +A +N
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188
Query: 531 WDG---GLVLVSHDFRLINQV 548
G G ++++H R++N +
Sbjct: 189 MRGPNFGALVITHYQRILNYI 209
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLE---ETLKKFDRILVVISHSQ 256
FSGG + R + + L + PT +LDE + LD++A + ++ + +VI+H Q
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 257 DFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQI 306
LN + + +H+ TG + + E + K Y+W +E++
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGPELAL-------ELEAKGYEWLKEKV 246
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426
L+ +++ GY D + + + ++ + V GPNG GK+TLLK ++ L PL G +
Sbjct: 11 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-I 67
Query: 427 HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL-TGKAQVM---- 481
+N + I + + + + + +++Y ++A +G+ K ++M
Sbjct: 68 YNGVPITKVKGKIFFLPEEIIVPRKISVEDY-------LKAVASLYGVKVNKNEIMDALE 120
Query: 482 ---------PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET----IDSLAEAL 528
+ LS G RV A + +LD+P +D ++ + S+ E L
Sbjct: 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 529 NEWDGGLVLVS 539
E G+V++S
Sbjct: 181 KEK--GIVIIS 189
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 177 KRAAEILY--GLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLD 231
KR E LY GLG+ K Q T SGG R+ LA L T+ +LDEPT L
Sbjct: 823 KRKLETLYDVGLGYXKLGQPATT--LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 880
Query: 232 LEACVWLEETLKKF----DRILVVISHSQDFL 259
++ L + L + D +L VI H+ D +
Sbjct: 881 VDDIARLLDVLHRLVDNGDTVL-VIEHNLDVI 911
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW-DGG--L 535
P LS G+ RV A +R+ + + +LDEPT L ++ I L + L+ D G +
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901
Query: 536 VLVSHDFRLINQVAHEI 552
+++ H+ +I + I
Sbjct: 902 LVIEHNLDVIKTADYII 918
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 177 KRAAEILY--GLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLD 231
KR E LY GLG+ K Q T SGG R+ LA L T+ +LDEPT L
Sbjct: 521 KRKLETLYDVGLGYMKLGQPATT--LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 578
Query: 232 LEACVWLEETLKKF----DRILVVISHSQDFL 259
++ L + L + D +L VI H+ D +
Sbjct: 579 VDDIARLLDVLHRLVDNGDTVL-VIEHNLDVI 609
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW-DGG--L 535
P LS G+ RV A +R+ + + +LDEPT L ++ I L + L+ D G +
Sbjct: 540 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 599
Query: 536 VLVSHDFRLINQVAHEI 552
+++ H+ +I + I
Sbjct: 600 LVIEHNLDVIKTADYII 616
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 177 KRAAEILY--GLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLD 231
KR E LY GLG+ K Q T SGG R+ LA L T+ +LDEPT L
Sbjct: 823 KRKLETLYDVGLGYMKLGQPATT--LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 880
Query: 232 LEACVWLEETLKKF----DRILVVISHSQDFLN 260
++ L + L + D +L VI H+ D +
Sbjct: 881 VDDIARLLDVLHRLVDNGDTVL-VIEHNLDVIK 912
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 482 PMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW-DGG--L 535
P LS G+ RV A +R+ + + +LDEPT L ++ I L + L+ D G +
Sbjct: 842 PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901
Query: 536 VLVSHDFRLINQVAHEI 552
+++ H+ +I + I
Sbjct: 902 LVIEHNLDVIKTADYII 918
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 32/145 (22%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIAQFHQHLAEK 442
++GPNG+GKSTL+ ++TG L +G V N +R Q Q L E
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 443 LDMD-------------MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK--NLS 487
++ +++L Y K++ EEE + A + + K LS
Sbjct: 98 TVLENLLIGEICPGESPLNSLFY--KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEP 512
GQ V P M+++DEP
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEP 180
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEP 226
+K + SGG + + RAL NP ++++DEP
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 32/145 (22%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LRIAQFHQHLAEK 442
++GPNG+GKSTL+ ++TG L +G V N +R Q Q L E
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 443 LDMD-------------MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMK--NLS 487
++ +++L Y K++ EEE + A + + K LS
Sbjct: 98 TVLENLLIGEINPGESPLNSLFY--KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155
Query: 488 DGQRSRVVFAWLAYRQPHMLLLDEP 512
GQ V P M+++DEP
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEP 180
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEP 226
+K + SGG + + RAL NP ++++DEP
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|1APS|A Chain A, Three-Dimensional Structure Of Acylphosphatase. Refinement
And Structure Analysis
Length = 98
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 298 QYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKME 338
Q + +E++ SMK ++++ G S+++ R S EKT++K+E
Sbjct: 50 QVQGPEEKVNSMKSWLSKVGSPSSRIDRTNFSNEKTISKLE 90
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 199 DFSGGWR------MRIALARALFINPT-ILLLDEPTNHLDLEACVWLEETLKKFDRI--L 249
+ SGG + +R+A+A AL N ++LDEPT +LD L E +K I +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 250 VVISHSQDFLNGVCTNIIHMQ 270
++I+H ++ L V II+++
Sbjct: 340 IIITHHRE-LEDVADVIINVK 359
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 398 LVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428
++GPNG+GKSTL+ ++TG L +G V N
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 195 KKTRDFSGGWRMRIALARALFINPTILLLDEP 226
+K + SGG + + RAL NP ++++D+P
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 200 FSGGWRM------RIALARALFINPTILLLDEPTNHLDLEA----CVWLEETLKKFDRIL 249
SGG R+ R+A++ L ++L+LDEPT +LD E +E LKK +++
Sbjct: 89 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 148
Query: 250 VVISHSQDFLNGVCTNIIHM 269
+V SH ++ L ++I +
Sbjct: 149 LV-SHDEE-LKDAADHVIRI 166
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 482 PMKNLSDGQRSRVVFAWLAYR---------QPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
P+ LS G+R + LA+R + +L+LDEPT +LD E L + +
Sbjct: 85 PLTFLSGGER---IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 141
Query: 533 GGL---VLVSHDFRLINQVAHEIWVC 555
+ +LVSHD L + H I +
Sbjct: 142 KKIPQVILVSHDEELKDAADHVIRIS 167
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 200 FSGGWRM------RIALARALFINPTILLLDEPTNHLDLEA----CVWLEETLKKFDRIL 249
SGG R+ R+A++ L ++L+LDEPT +LD E +E LKK +++
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 250 VVISHSQDFLNGVCTNIIHM 269
+V SH ++ L ++I +
Sbjct: 144 LV-SHDEE-LKDAADHVIRI 161
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 482 PMKNLSDGQRSRVVFAWLAYR---------QPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
P+ LS G+R + LA+R + +L+LDEPT +LD E L + +
Sbjct: 80 PLTFLSGGER---IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 136
Query: 533 GGL---VLVSHDFRLINQVAHEIWVC 555
+ +LVSHD L + H I +
Sbjct: 137 KKIPQVILVSHDEELKDAADHVIRIS 162
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 200 FSGGWRM------RIALARALFINPTILLLDEPTNHLDLEA----CVWLEETLKKFDRIL 249
SGG R+ R+A++ L ++L+LDEPT +LD E +E LKK +++
Sbjct: 269 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 328
Query: 250 VVISHSQDF 258
+V SH ++
Sbjct: 329 LV-SHDEEL 336
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 482 PMKNLSDGQRSRVVFAWLAYR---------QPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
P+ LS G+R + LA+R + +L+LDEPT +LD E L + +
Sbjct: 265 PLTFLSGGER---IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 321
Query: 533 GGL---VLVSHDFRLINQVAHEIWVCENQAVTRWE 564
+ +LVSHD L + H I + ++ E
Sbjct: 322 KKIPQVILVSHDEELKDAADHVIRISLENGSSKVE 356
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 200 FSGGWRM------RIALARALFINPTILLLDEPTNHLDLEA----CVWLEETLKKFDRIL 249
SGG R+ R+A++ L ++L+LDEPT +LD E +E LKK +++
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 250 VVISHSQDF 258
+V SH ++
Sbjct: 309 LV-SHDEEL 316
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 482 PMKNLSDGQRSRVVFAWLAYR---------QPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
P+ LS G+R + LA+R + +L+LDEPT +LD E L + +
Sbjct: 245 PLTFLSGGER---IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 533 GGL---VLVSHDFRLINQVAHEIWVCENQAVTRWE 564
+ +LVSHD L + H I + ++ E
Sbjct: 302 KKIPQVILVSHDEELKDAADHVIRISLENGSSKVE 336
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 200 FSGGWRM------RIALARALFINPTILLLDEPTNHLDLEA----CVWLEETLKKFDRIL 249
SGG R+ R+A++ L ++L+LDEPT +LD E +E LKK +++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 250 VVISHSQDF 258
+V SH ++
Sbjct: 118 LV-SHDEEL 125
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 482 PMKNLSDGQRSRVVFAWLAYR---------QPHMLLLDEPTNHLDIETIDSLAEALNEWD 532
P+ LS G+R + LA+R + +L+LDEPT +LD E L + +
Sbjct: 54 PLTFLSGGER---IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 533 GGL---VLVSHDFRLINQVAHEIWVC 555
+ +LVSHD L + H I +
Sbjct: 111 KKIPQVILVSHDEELKDAADHVIRIS 136
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 373 TFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRI 432
+F TP + ++ +D + ++G +G GK+TLL+ + G P G +
Sbjct: 13 SFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69
Query: 433 AQFHQHLAEKLDMDMSALQYMIKE---YP------------GN-------EEEKMRAAIG 470
++ L + L Y+++E +P GN E +++ A +
Sbjct: 70 SK-----NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124
Query: 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAE---- 526
G++ A P + LS GQ+ R A P ++LLDEP + LD + + E
Sbjct: 125 LTGISELAGRYPHE-LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 527 ALNEWDGGLVLVSHDFRLINQVAHEIWV 554
AL V VSHD Q A I V
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAV 211
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 203 GWRMRIALARALFINPTILLLDEPTNHLDLE----ACVWLEETLKKFDRILVVISHSQDF 258
G R+A++ L ++L+LDEPT +LD E +E LKK ++++V SH ++
Sbjct: 63 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV-SHDEEL 121
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 396 VALVGPNGAGKSTLLK 411
V L GP+GAGKSTLLK
Sbjct: 7 VVLSGPSGAGKSTLLK 22
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 216 INPTILLLDEPTNHLDLEACVWLEETLKKFDRIL-----------VVISHSQDFLNGVCT 264
+NP IL L H + L + +++F + + IS ++ F N CT
Sbjct: 141 VNPAILKL---LKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCT 197
Query: 265 NIIHMQNKQLKFYTGNFDQYVQTR---SELEENQM-KQYKW 301
++ ++ ++ G FDQ + + EEN +Y+W
Sbjct: 198 SVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQW 238
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415
K +D V V L+G NGAGK+T L + G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 384 KNLDFGVDLDSRVALVGPNGAGKSTLLK 411
+NL F + + + GP+G GKSTLLK
Sbjct: 8 ENLYFQGSMSRPIVISGPSGTGKSTLLK 35
>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa
Protein 2 (Rp2)
Length = 350
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 286 QTRSELEENQMKQYKWEQEQIASMKEYI 313
++R E EE + KQY W+Q + K+Y+
Sbjct: 14 ESRPENEEERPKQYSWDQREKVDPKDYM 41
>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
pdb|3BH7|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 352
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 286 QTRSELEENQMKQYKWEQEQIASMKEYI 313
++R E EE + KQY W+Q + K+Y+
Sbjct: 16 ESRPENEEERPKQYSWDQREKVDPKDYM 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,199,707
Number of Sequences: 62578
Number of extensions: 611454
Number of successful extensions: 2264
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 298
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)