Query 007982
Match_columns 582
No_of_seqs 708 out of 3113
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:16:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 5E-77 1.7E-81 684.7 43.9 426 71-565 434-980 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 8.5E-76 2.9E-80 647.7 34.3 442 73-572 21-493 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 6.3E-76 2.2E-80 655.2 28.8 444 72-573 83-564 (607)
4 3j16_B RLI1P; ribosome recycli 100.0 3.3E-72 1.1E-76 624.1 30.9 441 77-573 82-560 (608)
5 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-71 1.5E-75 608.6 33.4 431 76-557 3-461 (538)
6 3g5u_A MCG1178, multidrug resi 100.0 5.8E-69 2E-73 646.2 40.6 203 365-572 1029-1258(1284)
7 4f4c_A Multidrug resistance pr 100.0 2.4E-66 8E-71 625.0 45.1 202 366-572 1076-1304(1321)
8 3ux8_A Excinuclease ABC, A sub 100.0 9.9E-67 3.4E-71 592.1 29.5 426 84-571 30-639 (670)
9 3pih_A Uvrabc system protein A 100.0 9.4E-52 3.2E-56 475.0 32.5 334 178-572 443-902 (916)
10 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-51 4E-56 470.7 30.6 334 174-572 355-827 (842)
11 2ygr_A Uvrabc system protein A 100.0 1.7E-51 5.9E-56 471.0 27.2 336 175-572 498-960 (993)
12 2r6f_A Excinuclease ABC subuni 100.0 1.5E-51 5.2E-56 469.8 24.9 335 175-572 481-942 (972)
13 3gfo_A Cobalt import ATP-bindi 100.0 3.4E-46 1.2E-50 377.3 24.0 206 364-572 5-233 (275)
14 3tui_C Methionine import ATP-b 100.0 1.4E-45 4.7E-50 384.2 24.9 206 363-572 21-253 (366)
15 3tif_A Uncharacterized ABC tra 100.0 8.6E-46 2.9E-50 367.0 21.1 202 366-571 1-233 (235)
16 4g1u_C Hemin import ATP-bindin 100.0 7.1E-45 2.4E-49 366.6 26.4 205 363-572 8-237 (266)
17 3fvq_A Fe(3+) IONS import ATP- 100.0 9.6E-45 3.3E-49 377.7 26.3 203 365-572 3-228 (359)
18 1b0u_A Histidine permease; ABC 100.0 4.7E-45 1.6E-49 367.3 23.0 204 364-572 4-242 (262)
19 2olj_A Amino acid ABC transpor 100.0 9.1E-45 3.1E-49 364.8 24.3 203 365-572 23-248 (263)
20 1ji0_A ABC transporter; ATP bi 100.0 2E-44 6.7E-49 358.4 24.8 204 364-572 4-228 (240)
21 1g6h_A High-affinity branched- 100.0 9.9E-45 3.4E-49 364.2 22.2 201 364-569 5-239 (257)
22 2pcj_A ABC transporter, lipopr 100.0 1.2E-44 4.2E-49 356.2 22.0 196 365-566 3-222 (224)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-44 4.1E-49 367.3 22.3 205 364-571 19-251 (279)
24 3rlf_A Maltose/maltodextrin im 100.0 2.4E-44 8.2E-49 377.2 24.6 202 366-572 3-223 (381)
25 1vpl_A ABC transporter, ATP-bi 100.0 3E-44 1E-48 359.8 24.3 204 364-572 13-235 (256)
26 1z47_A CYSA, putative ABC-tran 100.0 4.4E-44 1.5E-48 373.0 25.0 206 363-572 11-235 (355)
27 2nq2_C Hypothetical ABC transp 100.0 7.4E-44 2.5E-48 356.7 24.3 200 365-571 3-216 (253)
28 2yz2_A Putative ABC transporte 100.0 1.1E-43 3.9E-48 358.2 25.3 204 366-572 2-227 (266)
29 2onk_A Molybdate/tungstate ABC 100.0 7.6E-44 2.6E-48 353.7 22.6 199 366-572 1-216 (240)
30 2yyz_A Sugar ABC transporter, 100.0 1.9E-43 6.4E-48 369.1 25.9 202 366-572 3-223 (359)
31 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-43 1.1E-47 355.6 26.6 209 72-286 7-233 (275)
32 2it1_A 362AA long hypothetical 100.0 1.6E-43 5.5E-48 370.0 24.1 202 366-572 3-223 (362)
33 3nh6_A ATP-binding cassette SU 100.0 1.6E-43 5.5E-48 362.4 23.5 203 365-572 52-277 (306)
34 2olj_A Amino acid ABC transpor 100.0 4.1E-43 1.4E-47 352.8 25.3 208 72-285 24-247 (263)
35 1v43_A Sugar-binding transport 100.0 2.7E-43 9.2E-48 369.6 24.9 202 366-572 11-231 (372)
36 1oxx_K GLCV, glucose, ABC tran 100.0 2.5E-43 8.4E-48 368.3 24.5 202 366-572 3-230 (353)
37 2ff7_A Alpha-hemolysin translo 100.0 2.9E-43 1E-47 351.3 23.3 202 366-572 7-232 (247)
38 3d31_A Sulfate/molybdate ABC t 100.0 1.8E-43 6.2E-48 368.0 22.7 200 366-572 1-217 (348)
39 3tui_C Methionine import ATP-b 100.0 4.7E-43 1.6E-47 365.2 25.4 209 71-285 23-252 (366)
40 1b0u_A Histidine permease; ABC 100.0 5.6E-43 1.9E-47 352.2 25.0 208 72-285 6-241 (262)
41 1g29_1 MALK, maltose transport 100.0 4E-43 1.4E-47 368.8 25.0 202 366-572 3-229 (372)
42 2pjz_A Hypothetical protein ST 100.0 3.2E-43 1.1E-47 353.6 22.4 198 366-571 1-214 (263)
43 4g1u_C Hemin import ATP-bindin 100.0 4.1E-43 1.4E-47 353.7 23.0 208 72-285 11-236 (266)
44 1mv5_A LMRA, multidrug resista 100.0 3.1E-43 1.1E-47 350.5 20.5 202 366-572 1-226 (243)
45 2pcj_A ABC transporter, lipopr 100.0 1.8E-42 6.2E-47 340.7 25.6 199 72-276 4-219 (224)
46 3tif_A Uncharacterized ABC tra 100.0 3.2E-42 1.1E-46 341.3 27.5 206 72-283 1-231 (235)
47 2zu0_C Probable ATP-dependent 100.0 6.2E-43 2.1E-47 352.9 22.2 205 364-572 18-254 (267)
48 3fvq_A Fe(3+) IONS import ATP- 100.0 2.3E-43 7.7E-48 367.4 18.9 208 72-285 4-227 (359)
49 3rlf_A Maltose/maltodextrin im 100.0 8.3E-43 2.8E-47 365.5 21.9 208 72-285 3-222 (381)
50 1g6h_A High-affinity branched- 100.0 1.2E-42 4E-47 349.2 21.9 206 72-283 7-239 (257)
51 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-42 1E-46 345.3 24.1 208 72-285 15-234 (256)
52 2d2e_A SUFC protein; ABC-ATPas 100.0 8.9E-43 3.1E-47 348.6 19.8 200 366-569 3-230 (250)
53 2ixe_A Antigen peptide transpo 100.0 2.6E-42 9E-47 348.9 23.2 203 364-572 14-245 (271)
54 2pze_A Cystic fibrosis transme 100.0 5.8E-42 2E-46 338.2 24.3 200 365-572 5-218 (229)
55 2qi9_C Vitamin B12 import ATP- 100.0 4.2E-42 1.4E-46 342.9 22.9 197 365-571 3-221 (249)
56 1ji0_A ABC transporter; ATP bi 100.0 4.4E-42 1.5E-46 341.5 22.1 208 72-285 6-227 (240)
57 1z47_A CYSA, putative ABC-tran 100.0 2.9E-42 1E-46 359.2 21.1 211 69-285 11-234 (355)
58 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-42 4.7E-47 352.1 17.2 208 71-284 20-250 (279)
59 2ghi_A Transport protein; mult 100.0 1.1E-41 3.7E-46 342.5 23.2 202 365-572 16-242 (260)
60 2cbz_A Multidrug resistance-as 100.0 7.8E-42 2.7E-46 339.0 21.2 199 366-572 3-217 (237)
61 2it1_A 362AA long hypothetical 100.0 7.2E-42 2.5E-46 357.5 21.4 208 72-285 3-222 (362)
62 1sgw_A Putative ABC transporte 100.0 1.4E-42 4.9E-47 338.3 14.8 190 364-560 8-210 (214)
63 2yyz_A Sugar ABC transporter, 100.0 5.6E-42 1.9E-46 358.0 19.5 208 72-285 3-222 (359)
64 1g29_1 MALK, maltose transport 100.0 1.1E-41 3.8E-46 357.9 21.7 208 72-285 3-228 (372)
65 2nq2_C Hypothetical ABC transp 100.0 1E-41 3.4E-46 341.2 20.1 196 72-284 4-215 (253)
66 2yz2_A Putative ABC transporte 100.0 7.3E-42 2.5E-46 345.0 19.1 207 72-284 2-225 (266)
67 2zu0_C Probable ATP-dependent 100.0 5.2E-41 1.8E-45 338.8 24.8 209 71-284 19-252 (267)
68 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-41 3.8E-46 354.5 20.5 204 72-285 1-216 (348)
69 2onk_A Molybdate/tungstate ABC 100.0 1.4E-41 4.8E-46 337.4 19.5 205 72-285 1-215 (240)
70 1v43_A Sugar-binding transport 100.0 1.3E-41 4.4E-46 356.9 20.0 208 72-285 11-230 (372)
71 1oxx_K GLCV, glucose, ABC tran 100.0 5.7E-42 2E-46 358.0 16.9 208 72-285 3-229 (353)
72 2d2e_A SUFC protein; ABC-ATPas 100.0 6.8E-41 2.3E-45 335.0 22.3 206 72-282 3-229 (250)
73 2ff7_A Alpha-hemolysin translo 100.0 4.8E-41 1.6E-45 335.2 20.6 208 71-285 6-231 (247)
74 1tf7_A KAIC; homohexamer, hexa 100.0 9.8E-44 3.4E-48 392.4 -2.0 390 72-559 12-444 (525)
75 2pjz_A Hypothetical protein ST 100.0 3E-41 1E-45 339.2 15.6 204 72-284 1-213 (263)
76 2ixe_A Antigen peptide transpo 100.0 1.5E-40 5E-45 336.1 19.3 208 71-285 15-244 (271)
77 3gd7_A Fusion complex of cysti 100.0 1.5E-40 5.2E-45 350.8 19.9 200 365-572 18-242 (390)
78 3nh6_A ATP-binding cassette SU 100.0 3E-40 1E-44 338.2 20.1 206 71-286 52-277 (306)
79 2qi9_C Vitamin B12 import ATP- 100.0 7.5E-40 2.6E-44 326.6 18.6 199 72-284 4-220 (249)
80 2bbs_A Cystic fibrosis transme 100.0 1.3E-39 4.6E-44 331.6 20.7 197 364-572 38-247 (290)
81 1mv5_A LMRA, multidrug resista 100.0 8.2E-41 2.8E-45 333.0 9.5 206 72-285 1-225 (243)
82 3b5x_A Lipid A export ATP-bind 100.0 5.1E-39 1.7E-43 358.9 25.0 203 365-572 340-567 (582)
83 2ghi_A Transport protein; mult 100.0 1.1E-39 3.7E-44 327.9 17.4 205 72-285 17-241 (260)
84 1sgw_A Putative ABC transporte 100.0 2.7E-40 9.1E-45 322.3 11.6 193 71-274 9-210 (214)
85 3b60_A Lipid A export ATP-bind 100.0 4.6E-39 1.6E-43 359.2 23.2 203 365-572 340-567 (582)
86 4a82_A Cystic fibrosis transme 100.0 3.7E-39 1.3E-43 359.6 21.5 203 365-572 338-564 (578)
87 3qf4_B Uncharacterized ABC tra 100.0 2.6E-39 8.8E-44 362.1 19.5 203 365-572 353-578 (598)
88 2cbz_A Multidrug resistance-as 100.0 2.2E-39 7.6E-44 321.3 16.0 196 72-285 3-216 (237)
89 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-38 3.8E-43 356.0 23.0 203 365-572 340-566 (587)
90 2pze_A Cystic fibrosis transme 100.0 1.2E-38 4E-43 314.6 20.3 193 72-285 6-217 (229)
91 2yl4_A ATP-binding cassette SU 100.0 1.1E-38 3.7E-43 357.1 22.4 201 367-572 342-570 (595)
92 3gd7_A Fusion complex of cysti 100.0 2.7E-39 9.1E-44 341.3 15.0 204 71-285 18-241 (390)
93 3b5x_A Lipid A export ATP-bind 100.0 3.7E-36 1.3E-40 335.8 22.9 210 71-286 340-567 (582)
94 2bbs_A Cystic fibrosis transme 100.0 1.6E-36 5.5E-41 308.8 16.8 190 72-285 40-246 (290)
95 3qf4_A ABC transporter, ATP-bi 100.0 3.8E-36 1.3E-40 335.6 20.1 209 71-286 340-566 (587)
96 3b60_A Lipid A export ATP-bind 100.0 2.9E-36 1E-40 336.6 19.0 207 71-285 340-566 (582)
97 2yl4_A ATP-binding cassette SU 100.0 5.1E-36 1.7E-40 335.5 19.2 206 72-285 340-569 (595)
98 3qf4_B Uncharacterized ABC tra 100.0 3.1E-36 1E-40 337.2 17.2 209 71-286 353-578 (598)
99 4a82_A Cystic fibrosis transme 100.0 4.2E-36 1.4E-40 334.9 17.8 210 71-286 338-564 (578)
100 2iw3_A Elongation factor 3A; a 100.0 3E-35 1E-39 338.5 24.9 200 366-572 435-635 (986)
101 4f4c_A Multidrug resistance pr 100.0 9.6E-36 3.3E-40 358.9 21.1 202 366-572 415-641 (1321)
102 3g5u_A MCG1178, multidrug resi 100.0 1.1E-35 3.7E-40 357.6 19.9 203 365-572 386-613 (1284)
103 3bk7_A ABC transporter ATP-bin 100.0 1.1E-35 3.9E-40 331.1 17.8 189 365-558 82-304 (607)
104 1yqt_A RNAse L inhibitor; ATP- 100.0 7.7E-36 2.6E-40 329.0 15.5 187 367-558 21-234 (538)
105 3ozx_A RNAse L inhibitor; ATP 100.0 2.6E-34 9E-39 316.1 16.7 187 71-271 268-461 (538)
106 3j16_B RLI1P; ribosome recycli 100.0 2.5E-33 8.5E-38 311.8 18.2 186 371-559 82-298 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-32 4.9E-37 311.8 17.1 191 380-572 31-298 (670)
108 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.5E-32 5.1E-37 296.5 -12.2 195 364-571 116-337 (460)
109 2vf7_A UVRA2, excinuclease ABC 100.0 1.3E-28 4.3E-33 281.2 16.1 108 176-285 707-826 (842)
110 4aby_A DNA repair protein RECN 100.0 8.7E-28 3E-32 257.3 18.2 75 486-561 296-378 (415)
111 2r6f_A Excinuclease ABC subuni 100.0 4.2E-28 1.5E-32 277.1 15.6 108 177-286 823-942 (972)
112 3pih_A Uvrabc system protein A 99.9 7.1E-28 2.4E-32 277.1 16.9 109 176-286 782-902 (916)
113 2ygr_A Uvrabc system protein A 99.9 2E-27 6.9E-32 272.5 18.5 108 177-286 841-960 (993)
114 4aby_A DNA repair protein RECN 99.9 2.1E-27 7.1E-32 254.4 16.6 77 200-277 296-380 (415)
115 2npi_A Protein CLP1; CLP1-PCF1 99.9 4.7E-30 1.6E-34 276.9 -15.5 190 71-283 117-335 (460)
116 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3E-26 1E-30 241.1 13.3 80 481-561 275-363 (365)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.3E-26 2.5E-30 238.2 12.9 81 194-275 274-363 (365)
118 4gp7_A Metallophosphoesterase; 99.9 4.4E-26 1.5E-30 214.4 6.3 145 90-261 1-164 (171)
119 3b85_A Phosphate starvation-in 99.9 7.4E-28 2.5E-32 233.6 -6.1 148 380-559 13-171 (208)
120 4gp7_A Metallophosphoesterase; 99.9 3.1E-26 1E-30 215.5 3.8 146 385-548 1-165 (171)
121 1ye8_A Protein THEP1, hypothet 99.9 3.3E-25 1.1E-29 209.8 6.4 158 395-579 2-177 (178)
122 1e69_A Chromosome segregation 99.9 1E-23 3.6E-28 218.3 13.7 90 193-283 213-310 (322)
123 1e69_A Chromosome segregation 99.9 1.3E-23 4.5E-28 217.5 13.5 89 480-569 214-310 (322)
124 3b85_A Phosphate starvation-in 99.9 1.6E-26 5.4E-31 224.2 -9.6 156 81-272 9-170 (208)
125 1ye8_A Protein THEP1, hypothet 99.9 1.7E-24 5.8E-29 204.9 0.3 74 192-265 69-152 (178)
126 1tq4_A IIGP1, interferon-induc 99.9 1.6E-25 5.4E-30 237.7 -11.3 171 380-559 36-255 (413)
127 3qkt_A DNA double-strand break 99.9 2.1E-21 7.2E-26 202.4 16.3 81 193-274 242-333 (339)
128 2v9p_A Replication protein E1; 99.9 9E-26 3.1E-30 230.3 -16.8 168 366-575 101-269 (305)
129 2o5v_A DNA replication and rep 99.8 1.8E-20 6.1E-25 195.8 17.6 85 194-283 259-353 (359)
130 3qkt_A DNA double-strand break 99.8 1E-20 3.5E-25 197.2 13.9 80 480-560 243-333 (339)
131 3b9q_A Chloroplast SRP recepto 99.8 1.2E-22 4.3E-27 207.8 -1.8 165 384-560 91-284 (302)
132 2pt7_A CAG-ALFA; ATPase, prote 99.8 8.7E-23 3E-27 211.7 -4.4 149 382-576 160-308 (330)
133 1tq4_A IIGP1, interferon-induc 99.8 1.3E-23 4.6E-28 222.9 -10.9 171 85-273 36-255 (413)
134 2v9p_A Replication protein E1; 99.8 1.2E-24 4.1E-29 222.0 -18.6 164 72-284 101-264 (305)
135 2o5v_A DNA replication and rep 99.8 1.1E-19 3.8E-24 189.8 17.0 85 481-570 260-354 (359)
136 2dpy_A FLII, flagellum-specifi 99.8 2.6E-22 8.8E-27 215.4 -4.0 181 363-569 128-341 (438)
137 1z6g_A Guanylate kinase; struc 99.8 1.8E-23 6.3E-28 204.3 -12.2 163 381-554 11-206 (218)
138 1znw_A Guanylate kinase, GMP k 99.8 2.4E-23 8.4E-28 201.6 -11.6 161 380-556 9-202 (207)
139 4ad8_A DNA repair protein RECN 99.8 2.6E-19 8.9E-24 196.9 19.0 77 481-558 392-473 (517)
140 1znw_A Guanylate kinase, GMP k 99.8 1E-22 3.5E-27 197.2 -7.3 165 86-270 10-202 (207)
141 2o8b_B DNA mismatch repair pro 99.8 1.2E-20 4E-25 220.8 7.2 165 364-561 748-930 (1022)
142 2obl_A ESCN; ATPase, hydrolase 99.8 4.7E-22 1.6E-26 207.2 -4.3 188 363-569 42-252 (347)
143 2og2_A Putative signal recogni 99.8 1.6E-21 5.3E-26 203.5 -0.8 164 385-560 149-341 (359)
144 3aez_A Pantothenate kinase; tr 99.8 5.5E-23 1.9E-27 211.4 -12.1 175 365-558 42-245 (312)
145 1cr0_A DNA primase/helicase; R 99.8 6.8E-20 2.3E-24 187.1 9.7 181 85-274 22-237 (296)
146 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-20 4.1E-25 208.0 3.3 152 92-273 275-444 (525)
147 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3E-19 1E-23 163.3 10.8 81 193-274 51-142 (148)
148 2obl_A ESCN; ATPase, hydrolase 99.8 1.2E-20 4.2E-25 196.5 -0.4 182 72-276 45-246 (347)
149 2eyu_A Twitching motility prot 99.8 4.6E-21 1.6E-25 192.3 -3.7 140 366-555 5-145 (261)
150 1cr0_A DNA primase/helicase; R 99.8 1.7E-19 5.7E-24 184.2 7.3 176 381-560 23-237 (296)
151 3thx_A DNA mismatch repair pro 99.8 2.6E-19 8.8E-24 207.1 9.6 140 380-561 649-803 (934)
152 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.2E-19 2.5E-23 160.8 10.4 80 480-560 52-142 (148)
153 3b9q_A Chloroplast SRP recepto 99.8 2.8E-20 9.5E-25 190.4 1.0 186 78-274 80-284 (302)
154 2o8b_B DNA mismatch repair pro 99.8 1.3E-19 4.4E-24 212.1 5.7 161 71-275 749-930 (1022)
155 2i3b_A HCR-ntpase, human cance 99.8 6.4E-21 2.2E-25 181.9 -4.7 157 393-578 1-184 (189)
156 2dpy_A FLII, flagellum-specifi 99.8 2.4E-20 8.3E-25 200.1 -0.8 179 71-276 130-335 (438)
157 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.3E-21 4.4E-26 202.9 -10.9 133 86-273 159-291 (330)
158 3thx_A DNA mismatch repair pro 99.8 5.9E-19 2E-23 204.1 8.5 154 72-276 631-804 (934)
159 1z6g_A Guanylate kinase; struc 99.7 5.8E-21 2E-25 186.6 -7.9 169 85-267 10-205 (218)
160 3aez_A Pantothenate kinase; tr 99.7 1.1E-21 3.6E-26 201.8 -14.8 179 72-273 43-246 (312)
161 2og2_A Putative signal recogni 99.7 2.5E-19 8.6E-24 186.8 2.2 175 89-274 148-341 (359)
162 3sop_A Neuronal-specific septi 99.7 2.1E-20 7.2E-25 188.4 -5.8 138 395-544 4-152 (270)
163 2ehv_A Hypothetical protein PH 99.7 1.2E-18 4.2E-23 172.4 7.1 180 366-556 6-206 (251)
164 3thx_B DNA mismatch repair pro 99.7 9.3E-19 3.2E-23 201.9 7.1 140 379-551 659-804 (918)
165 3thx_B DNA mismatch repair pro 99.7 6.5E-19 2.2E-23 203.2 5.3 153 72-265 640-804 (918)
166 1ewq_A DNA mismatch repair pro 99.7 1E-18 3.5E-23 198.6 6.4 146 366-549 550-704 (765)
167 2jeo_A Uridine-cytidine kinase 99.7 4.1E-19 1.4E-23 176.4 1.2 170 378-574 10-189 (245)
168 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.7E-17 5.8E-22 162.0 9.7 161 380-558 9-192 (235)
169 4a74_A DNA repair and recombin 99.7 1.7E-17 5.9E-22 162.0 9.5 152 389-558 21-200 (231)
170 2ehv_A Hypothetical protein PH 99.7 3.6E-17 1.2E-21 161.8 9.9 178 72-271 6-207 (251)
171 2eyu_A Twitching motility prot 99.7 2E-18 6.9E-23 173.0 -1.9 142 72-271 5-147 (261)
172 4a74_A DNA repair and recombin 99.7 7.1E-17 2.4E-21 157.6 8.6 149 94-272 21-200 (231)
173 3asz_A Uridine kinase; cytidin 99.7 3E-19 1E-23 172.9 -8.9 142 390-543 3-162 (211)
174 3kta_B Chromosome segregation 99.7 3.4E-16 1.2E-20 146.7 12.1 91 194-285 59-157 (173)
175 3kta_B Chromosome segregation 99.7 7.2E-16 2.5E-20 144.5 13.9 95 481-576 60-162 (173)
176 1ewq_A DNA mismatch repair pro 99.7 1.5E-17 5.2E-22 189.1 2.8 145 72-263 550-704 (765)
177 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.9E-16 6.3E-21 154.6 9.3 168 85-273 9-193 (235)
178 1pui_A ENGB, probable GTP-bind 99.6 3.8E-17 1.3E-21 157.3 3.4 162 366-531 3-196 (210)
179 2jeo_A Uridine-cytidine kinase 99.6 2.4E-17 8.3E-22 163.6 1.9 161 83-272 10-179 (245)
180 2qnr_A Septin-2, protein NEDD5 99.6 2E-18 6.8E-23 176.8 -6.4 157 370-543 2-168 (301)
181 1pui_A ENGB, probable GTP-bind 99.6 1E-16 3.5E-21 154.2 4.5 166 72-245 3-196 (210)
182 2i3b_A HCR-ntpase, human cance 99.6 2.9E-18 9.8E-23 163.5 -6.6 147 98-276 1-167 (189)
183 1wb9_A DNA mismatch repair pro 99.6 9.8E-17 3.4E-21 183.4 3.8 148 379-560 594-747 (800)
184 2qnr_A Septin-2, protein NEDD5 99.6 3E-18 1E-22 175.4 -8.6 160 76-257 2-168 (301)
185 3jvv_A Twitching mobility prot 99.6 5.8E-17 2E-21 169.2 0.9 144 370-556 92-244 (356)
186 3sop_A Neuronal-specific septi 99.6 3.7E-18 1.3E-22 172.0 -9.0 144 100-258 4-152 (270)
187 1nlf_A Regulatory protein REPA 99.6 2.4E-15 8.2E-20 152.1 10.4 147 389-546 26-185 (279)
188 1nlf_A Regulatory protein REPA 99.6 3E-15 1E-19 151.3 11.0 139 95-260 27-185 (279)
189 4ad8_A DNA repair protein RECN 99.6 1.9E-15 6.6E-20 166.1 9.4 77 195-272 392-473 (517)
190 2cvh_A DNA repair and recombin 99.6 5.3E-15 1.8E-19 143.3 11.4 147 382-558 8-185 (220)
191 1rj9_A FTSY, signal recognitio 99.6 2.7E-16 9.2E-21 160.9 0.5 139 392-543 101-259 (304)
192 3asz_A Uridine kinase; cytidin 99.6 1.3E-17 4.6E-22 161.1 -8.7 144 95-256 3-161 (211)
193 1wb9_A DNA mismatch repair pro 99.6 9.7E-16 3.3E-20 175.2 4.6 160 72-274 577-747 (800)
194 2cvh_A DNA repair and recombin 99.6 7.3E-15 2.5E-19 142.3 9.5 149 87-272 8-185 (220)
195 2qag_C Septin-7; cell cycle, c 99.5 2.8E-16 9.5E-21 167.2 -2.2 159 365-544 10-179 (418)
196 3szr_A Interferon-induced GTP- 99.5 2.5E-16 8.6E-21 176.0 -3.5 171 364-561 8-227 (608)
197 3jvv_A Twitching mobility prot 99.5 4.1E-16 1.4E-20 162.8 -2.0 144 76-271 92-245 (356)
198 1pzn_A RAD51, DNA repair and r 99.5 1.9E-15 6.6E-20 157.7 1.7 154 382-559 119-303 (349)
199 3auy_A DNA double-strand break 99.5 7.6E-14 2.6E-18 147.0 11.8 75 195-270 276-359 (371)
200 2ewv_A Twitching motility prot 99.5 3.4E-15 1.2E-19 157.1 0.2 126 382-552 127-253 (372)
201 1pzn_A RAD51, DNA repair and r 99.5 2E-14 6.9E-19 150.0 5.8 160 86-274 118-304 (349)
202 1s96_A Guanylate kinase, GMP k 99.5 7.9E-15 2.7E-19 143.0 1.8 146 387-576 10-164 (219)
203 3auy_A DNA double-strand break 99.5 1.6E-13 5.6E-18 144.4 12.0 75 481-556 276-359 (371)
204 2qag_C Septin-7; cell cycle, c 99.5 5.4E-15 1.8E-19 157.3 -0.5 160 72-258 11-179 (418)
205 2gza_A Type IV secretion syste 99.4 5.2E-15 1.8E-19 155.2 -2.4 171 368-576 137-320 (361)
206 1n0w_A DNA repair protein RAD5 99.4 7.4E-13 2.5E-17 130.1 12.8 140 389-558 20-209 (243)
207 1rj9_A FTSY, signal recognitio 99.4 1.8E-13 6.2E-18 139.8 7.8 149 97-256 101-258 (304)
208 1w1w_A Structural maintenance 99.4 4.9E-13 1.7E-17 143.5 10.1 75 195-270 329-410 (430)
209 1w1w_A Structural maintenance 99.4 7.1E-13 2.4E-17 142.3 10.5 75 481-556 329-410 (430)
210 1lw7_A Transcriptional regulat 99.4 1.6E-15 5.4E-20 159.5 -10.2 163 383-556 158-342 (365)
211 1zp6_A Hypothetical protein AT 99.4 4.4E-15 1.5E-19 140.9 -6.5 138 389-541 5-159 (191)
212 1n0w_A DNA repair protein RAD5 99.4 2.2E-12 7.5E-17 126.7 11.0 145 94-272 20-209 (243)
213 2qag_B Septin-6, protein NEDD5 99.3 1E-13 3.6E-18 146.9 0.1 167 366-542 16-219 (427)
214 3szr_A Interferon-induced GTP- 99.3 2.9E-15 1E-19 167.3 -13.0 174 72-274 10-226 (608)
215 3ec2_A DNA replication protein 99.3 4.1E-13 1.4E-17 126.3 3.6 43 215-257 98-144 (180)
216 2bbw_A Adenylate kinase 4, AK4 99.3 3E-14 1E-18 141.2 -4.8 131 392-531 26-196 (246)
217 3ec2_A DNA replication protein 99.3 7.4E-14 2.5E-18 131.4 -2.0 109 387-543 32-144 (180)
218 2bdt_A BH3686; alpha-beta prot 99.3 2.2E-16 7.6E-21 149.9 -19.6 157 393-570 2-182 (189)
219 1lw7_A Transcriptional regulat 99.3 9.2E-15 3.2E-19 153.6 -9.3 169 88-270 158-342 (365)
220 1ls1_A Signal recognition part 99.3 9E-14 3.1E-18 141.7 -3.1 118 384-531 91-209 (295)
221 1udx_A The GTP-binding protein 99.3 5.2E-13 1.8E-17 141.9 2.6 142 383-539 147-305 (416)
222 2bbw_A Adenylate kinase 4, AK4 99.3 4.7E-13 1.6E-17 132.5 1.6 135 97-245 26-196 (246)
223 2bdt_A BH3686; alpha-beta prot 99.3 3.1E-15 1.1E-19 142.0 -13.7 79 198-283 91-181 (189)
224 1zp6_A Hypothetical protein AT 99.3 1.5E-13 5E-18 130.3 -3.5 43 195-245 105-147 (191)
225 2ewv_A Twitching motility prot 99.2 5.9E-13 2E-17 140.0 -0.4 129 87-269 127-256 (372)
226 3lda_A DNA repair protein RAD5 99.2 3.3E-11 1.1E-15 127.5 12.8 147 389-558 174-363 (400)
227 2qag_B Septin-6, protein NEDD5 99.2 7E-13 2.4E-17 140.6 -1.1 173 72-256 16-219 (427)
228 2kjq_A DNAA-related protein; s 99.2 7.6E-12 2.6E-16 114.3 5.6 86 392-541 35-124 (149)
229 1s96_A Guanylate kinase, GMP k 99.2 1.2E-11 4.1E-16 120.4 6.9 149 93-285 11-159 (219)
230 3lda_A DNA repair protein RAD5 99.2 4.2E-11 1.4E-15 126.7 11.2 57 216-272 272-363 (400)
231 2rcn_A Probable GTPase ENGC; Y 99.2 5.3E-12 1.8E-16 131.2 3.5 113 383-500 206-328 (358)
232 1htw_A HI0065; nucleotide-bind 99.2 2.3E-13 7.9E-18 125.7 -7.3 57 370-428 11-67 (158)
233 1sxj_E Activator 1 40 kDa subu 99.1 1.8E-11 6.1E-16 127.4 5.1 137 395-554 38-187 (354)
234 3e70_C DPA, signal recognition 99.1 4E-12 1.4E-16 131.2 0.2 167 390-573 126-321 (328)
235 2qm8_A GTPase/ATPase; G protei 99.1 5.1E-14 1.7E-18 146.2 -14.4 159 367-531 30-258 (337)
236 1nij_A Hypothetical protein YJ 99.1 1.3E-13 4.5E-18 142.0 -11.3 51 485-546 141-193 (318)
237 1p9r_A General secretion pathw 99.1 6E-14 2.1E-18 149.3 -14.3 135 366-508 143-314 (418)
238 3c8u_A Fructokinase; YP_612366 99.1 2E-12 6.7E-17 124.8 -2.6 147 95-265 19-168 (208)
239 2gza_A Type IV secretion syste 99.1 1.3E-12 4.4E-17 137.0 -5.0 153 74-273 137-303 (361)
240 2yhs_A FTSY, cell division pro 99.1 3.6E-12 1.2E-16 136.9 -1.8 162 384-559 284-475 (503)
241 2oap_1 GSPE-2, type II secreti 99.1 3.2E-13 1.1E-17 147.4 -10.2 159 381-551 248-459 (511)
242 3c8u_A Fructokinase; YP_612366 99.1 6.8E-13 2.3E-17 128.0 -7.4 136 390-551 19-168 (208)
243 1htw_A HI0065; nucleotide-bind 99.1 1.1E-12 3.7E-17 121.1 -6.0 54 73-127 8-61 (158)
244 2f1r_A Molybdopterin-guanine d 99.1 5.8E-13 2E-17 124.6 -8.3 127 394-530 3-158 (171)
245 1udx_A The GTP-binding protein 99.1 3.1E-12 1E-16 136.0 -4.0 147 88-253 147-305 (416)
246 2kjq_A DNAA-related protein; s 99.1 6.3E-11 2.2E-15 108.2 4.7 41 214-255 80-124 (149)
247 1odf_A YGR205W, hypothetical 3 99.1 6.1E-12 2.1E-16 127.7 -2.4 120 392-520 30-169 (290)
248 2qm8_A GTPase/ATPase; G protei 99.1 3E-13 1E-17 140.4 -12.4 56 72-127 29-84 (337)
249 1lvg_A Guanylate kinase, GMP k 99.1 2.6E-13 8.7E-18 130.1 -12.2 163 391-576 2-187 (198)
250 2px0_A Flagellar biosynthesis 99.1 2.7E-10 9.2E-15 115.9 9.4 136 391-561 103-245 (296)
251 1vma_A Cell division protein F 99.1 8.6E-11 2.9E-15 120.0 5.4 98 386-514 97-197 (306)
252 1nij_A Hypothetical protein YJ 99.0 6.5E-12 2.2E-16 129.3 -3.4 68 183-263 127-196 (318)
253 1lvg_A Guanylate kinase, GMP k 99.0 2.3E-13 7.8E-18 130.5 -15.4 57 210-271 116-173 (198)
254 2oap_1 GSPE-2, type II secreti 99.0 1.2E-12 4.1E-17 142.9 -12.1 167 86-264 248-458 (511)
255 3e70_C DPA, signal recognition 99.0 8.8E-11 3E-15 121.1 2.3 164 95-274 126-306 (328)
256 1odf_A YGR205W, hypothetical 3 99.0 1.9E-11 6.4E-16 124.1 -3.2 40 195-234 130-169 (290)
257 1p9r_A General secretion pathw 99.0 2.2E-12 7.6E-17 137.2 -10.5 144 72-223 143-315 (418)
258 1sxj_E Activator 1 40 kDa subu 99.0 3.3E-10 1.1E-14 117.8 6.0 54 214-268 131-187 (354)
259 2f1r_A Molybdopterin-guanine d 99.0 1.5E-11 5.2E-16 114.9 -4.3 110 99-221 3-125 (171)
260 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 3.7E-12 1.3E-16 134.1 -9.9 153 390-570 17-211 (392)
261 2r6a_A DNAB helicase, replicat 98.9 3E-10 1E-14 122.6 4.7 174 381-560 191-401 (454)
262 2rcn_A Probable GTPase ENGC; Y 98.9 1.2E-10 3.9E-15 121.1 0.7 120 88-214 206-328 (358)
263 2dr3_A UPF0273 protein PH0284; 98.9 1.1E-08 3.7E-13 100.3 14.3 56 502-557 127-196 (247)
264 1ls1_A Signal recognition part 98.9 1.4E-09 4.6E-14 110.7 7.9 132 73-245 77-209 (295)
265 1in4_A RUVB, holliday junction 98.9 2.5E-12 8.6E-17 133.3 -12.8 175 72-265 18-211 (334)
266 1sq5_A Pantothenate kinase; P- 98.9 4.6E-12 1.6E-16 129.9 -10.7 59 365-426 36-115 (308)
267 2dr3_A UPF0273 protein PH0284; 98.9 1.1E-08 3.7E-13 100.2 13.9 56 216-271 127-196 (247)
268 2yv5_A YJEQ protein; hydrolase 98.9 1.2E-10 4E-15 119.1 -0.4 107 390-498 162-300 (302)
269 3euj_A Chromosome partition pr 98.9 5.2E-10 1.8E-14 120.5 4.4 71 483-556 377-464 (483)
270 1vma_A Cell division protein F 98.9 8E-10 2.7E-14 112.8 4.3 112 90-244 96-210 (306)
271 2yhs_A FTSY, cell division pro 98.9 3.5E-10 1.2E-14 121.5 1.7 174 88-273 283-475 (503)
272 1in4_A RUVB, holliday junction 98.9 1.4E-12 4.7E-17 135.3 -17.0 161 367-551 19-211 (334)
273 2x8a_A Nuclear valosin-contain 98.9 3E-12 1E-16 129.0 -14.5 137 380-530 33-192 (274)
274 2px0_A Flagellar biosynthesis 98.8 3.2E-09 1.1E-13 107.9 7.7 137 96-276 103-246 (296)
275 2r6a_A DNAB helicase, replicat 98.8 8.5E-09 2.9E-13 111.2 9.2 177 85-274 190-401 (454)
276 2x8a_A Nuclear valosin-contain 98.8 7.1E-12 2.4E-16 126.3 -14.2 146 83-244 31-192 (274)
277 1ypw_A Transitional endoplasmi 98.8 3.2E-09 1.1E-13 122.3 4.8 33 386-418 504-536 (806)
278 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.3E-10 4.6E-15 122.3 -6.3 73 195-282 129-209 (392)
279 2ius_A DNA translocase FTSK; n 98.7 7.3E-10 2.5E-14 120.2 -1.1 173 90-268 159-361 (512)
280 2ius_A DNA translocase FTSK; n 98.7 2.7E-10 9.4E-15 123.5 -4.8 167 385-554 159-361 (512)
281 1u0l_A Probable GTPase ENGC; p 98.7 7.9E-10 2.7E-14 112.8 -3.3 99 389-488 165-294 (301)
282 3euj_A Chromosome partition pr 98.7 1E-08 3.6E-13 110.4 4.6 51 75-128 9-59 (483)
283 3lnc_A Guanylate kinase, GMP k 98.7 6.5E-09 2.2E-13 101.5 2.5 178 381-571 15-223 (231)
284 1oix_A RAS-related protein RAB 98.6 1.3E-08 4.4E-13 96.2 4.3 37 492-530 152-188 (191)
285 2zr9_A Protein RECA, recombina 98.6 1E-07 3.6E-12 99.0 11.4 137 389-561 57-233 (349)
286 1t9h_A YLOQ, probable GTPase E 98.6 2E-09 6.8E-14 109.7 -3.3 102 390-493 170-303 (307)
287 1jjv_A Dephospho-COA kinase; P 98.6 2.4E-08 8.1E-13 95.5 4.1 125 395-556 4-131 (206)
288 2zr9_A Protein RECA, recombina 98.6 1.4E-07 4.7E-12 98.1 9.9 70 206-275 126-233 (349)
289 3nwj_A ATSK2; P loop, shikimat 98.6 3.5E-09 1.2E-13 104.9 -2.0 51 72-122 17-72 (250)
290 3nwj_A ATSK2; P loop, shikimat 98.5 4.5E-09 1.5E-13 104.1 -2.1 54 364-417 15-72 (250)
291 3k1j_A LON protease, ATP-depen 98.5 2.4E-08 8.1E-13 111.6 2.9 147 379-530 46-227 (604)
292 3cmw_A Protein RECA, recombina 98.5 1.2E-05 4.1E-10 97.8 25.8 133 389-557 728-900 (1706)
293 3lnc_A Guanylate kinase, GMP k 98.5 3E-08 1E-12 96.8 2.4 38 86-123 15-53 (231)
294 1sq5_A Pantothenate kinase; P- 98.5 1.8E-09 6E-14 110.6 -6.7 55 72-128 37-112 (308)
295 1qhl_A Protein (cell division 98.5 3.3E-09 1.1E-13 103.5 -5.2 54 366-428 9-62 (227)
296 1iy2_A ATP-dependent metallopr 98.5 2.8E-10 9.4E-15 114.6 -13.4 49 73-123 50-98 (278)
297 1svm_A Large T antigen; AAA+ f 98.4 6E-10 2.1E-14 116.8 -11.9 130 381-514 157-312 (377)
298 3tr0_A Guanylate kinase, GMP k 98.4 7E-08 2.4E-12 91.8 3.3 32 92-123 1-32 (205)
299 1jjv_A Dephospho-COA kinase; P 98.4 1.8E-07 6.2E-12 89.3 5.7 125 100-270 4-131 (206)
300 3kta_A Chromosome segregation 98.4 1.4E-07 5E-12 88.1 4.9 39 384-423 18-56 (182)
301 3tr0_A Guanylate kinase, GMP k 98.4 7.5E-08 2.6E-12 91.6 2.9 32 387-418 1-32 (205)
302 2yv5_A YJEQ protein; hydrolase 98.4 4.9E-09 1.7E-13 106.9 -5.9 116 94-212 161-300 (302)
303 2f9l_A RAB11B, member RAS onco 98.4 1.8E-07 6E-12 88.7 5.2 35 494-530 130-164 (199)
304 2xau_A PRE-mRNA-splicing facto 98.4 2.2E-07 7.4E-12 106.5 5.7 75 195-269 186-265 (773)
305 2xau_A PRE-mRNA-splicing facto 98.4 3.2E-07 1.1E-11 105.1 6.8 70 482-551 187-261 (773)
306 2ce7_A Cell division protein F 98.3 2.2E-07 7.4E-12 100.3 4.7 113 86-260 39-168 (476)
307 3kta_A Chromosome segregation 98.3 2.9E-07 9.8E-12 86.0 4.9 38 86-124 13-52 (182)
308 2ce7_A Cell division protein F 98.3 3.2E-07 1.1E-11 98.9 5.6 111 382-545 40-167 (476)
309 1qhl_A Protein (cell division 98.3 2E-08 6.7E-13 98.0 -4.1 50 71-128 8-57 (227)
310 2e87_A Hypothetical protein PH 98.3 5.6E-07 1.9E-11 93.8 6.5 120 394-543 168-293 (357)
311 3k1j_A LON protease, ATP-depen 98.3 2.8E-07 9.5E-12 102.9 3.9 162 76-244 38-227 (604)
312 2qtf_A Protein HFLX, GTP-bindi 98.3 4E-07 1.4E-11 95.1 4.8 132 395-530 181-350 (364)
313 1fnn_A CDC6P, cell division co 98.3 3.5E-06 1.2E-10 87.9 11.9 124 395-549 46-176 (389)
314 3a00_A Guanylate kinase, GMP k 98.3 2.1E-07 7.1E-12 87.7 2.1 27 393-419 1-27 (186)
315 2j41_A Guanylate kinase; GMP, 98.2 5.3E-07 1.8E-11 85.7 3.5 35 388-422 1-35 (207)
316 1oix_A RAS-related protein RAB 98.2 2.3E-07 8E-12 87.5 0.8 37 206-244 152-188 (191)
317 3t34_A Dynamin-related protein 98.1 6E-06 2E-10 86.0 9.8 43 381-426 25-69 (360)
318 3hr8_A Protein RECA; alpha and 98.1 2.5E-06 8.5E-11 88.6 6.6 29 94-122 57-85 (356)
319 3uie_A Adenylyl-sulfate kinase 98.1 2.6E-07 9.1E-12 87.9 -0.7 48 76-123 3-50 (200)
320 4a1f_A DNAB helicase, replicat 98.1 8.3E-06 2.8E-10 84.0 10.2 127 88-254 36-164 (338)
321 1fnn_A CDC6P, cell division co 98.1 1.4E-05 4.7E-10 83.4 11.2 48 216-264 124-177 (389)
322 1kgd_A CASK, peripheral plasma 98.1 1E-06 3.5E-11 82.4 2.1 35 391-425 3-38 (180)
323 3vaa_A Shikimate kinase, SK; s 98.1 1.7E-06 5.9E-11 82.2 3.7 38 85-122 12-49 (199)
324 4a1f_A DNAB helicase, replicat 98.1 6.6E-06 2.3E-10 84.7 8.3 127 382-539 35-163 (338)
325 2e87_A Hypothetical protein PH 98.1 5E-06 1.7E-10 86.5 7.5 62 195-257 227-293 (357)
326 2j41_A Guanylate kinase; GMP, 98.1 2.1E-06 7.1E-11 81.6 4.0 33 93-125 1-33 (207)
327 3vaa_A Shikimate kinase, SK; s 98.0 1.6E-06 5.5E-11 82.4 3.2 38 380-417 12-49 (199)
328 3a00_A Guanylate kinase, GMP k 98.0 1.5E-06 5.1E-11 81.7 2.9 27 98-124 1-27 (186)
329 3hr8_A Protein RECA; alpha and 98.0 2.9E-05 1E-09 80.5 12.8 36 389-424 57-92 (356)
330 3uie_A Adenylyl-sulfate kinase 98.0 2E-07 6.7E-12 88.8 -3.4 52 371-424 4-55 (200)
331 2f9l_A RAB11B, member RAS onco 98.0 1.4E-06 4.8E-11 82.4 2.5 35 208-244 130-164 (199)
332 2qby_A CDC6 homolog 1, cell di 98.0 3.3E-06 1.1E-10 87.8 5.4 130 391-548 43-179 (386)
333 4e22_A Cytidylate kinase; P-lo 98.0 1.2E-06 4E-11 86.8 0.6 35 391-425 25-62 (252)
334 2qtf_A Protein HFLX, GTP-bindi 98.0 1.2E-06 4.1E-11 91.5 0.5 63 178-244 280-350 (364)
335 4eun_A Thermoresistant glucoki 98.0 2.6E-06 9E-11 80.9 2.8 39 386-428 22-60 (200)
336 3kl4_A SRP54, signal recogniti 97.9 1.9E-05 6.5E-10 83.9 9.0 112 392-531 96-210 (433)
337 1kgd_A CASK, peripheral plasma 97.9 4.1E-06 1.4E-10 78.3 3.4 27 97-123 4-30 (180)
338 4e22_A Cytidylate kinase; P-lo 97.9 2.1E-06 7.1E-11 85.0 1.3 41 82-125 14-57 (252)
339 1u0l_A Probable GTPase ENGC; p 97.9 2.5E-06 8.7E-11 86.7 1.7 37 93-129 164-200 (301)
340 1v5w_A DMC1, meiotic recombina 97.9 3.7E-05 1.3E-09 79.5 10.1 27 94-120 118-144 (343)
341 3bh0_A DNAB-like replicative h 97.9 1.6E-05 5.3E-10 81.4 6.8 131 87-255 57-190 (315)
342 4eun_A Thermoresistant glucoki 97.9 6.2E-06 2.1E-10 78.3 3.5 31 92-122 23-53 (200)
343 3tau_A Guanylate kinase, GMP k 97.8 7.1E-06 2.4E-10 78.6 3.7 29 391-419 6-34 (208)
344 1ega_A Protein (GTP-binding pr 97.8 3.3E-07 1.1E-11 93.3 -6.2 62 485-553 100-170 (301)
345 2qby_A CDC6 homolog 1, cell di 97.8 9.9E-06 3.4E-10 84.1 4.7 45 218-262 129-179 (386)
346 1v5w_A DMC1, meiotic recombina 97.8 5.3E-05 1.8E-09 78.4 9.9 28 389-416 118-145 (343)
347 2z43_A DNA repair and recombin 97.8 5E-05 1.7E-09 77.9 9.5 28 389-416 103-130 (324)
348 2dy1_A Elongation factor G; tr 97.8 4E-06 1.4E-10 94.5 1.2 135 387-545 3-139 (665)
349 1ixz_A ATP-dependent metallopr 97.8 5.1E-07 1.8E-11 89.1 -5.5 49 73-123 26-74 (254)
350 1rz3_A Hypothetical protein rb 97.8 4.1E-06 1.4E-10 79.8 1.0 37 390-426 19-55 (201)
351 2vp4_A Deoxynucleoside kinase; 97.8 7.2E-06 2.5E-10 79.8 2.6 37 388-428 15-51 (230)
352 3ney_A 55 kDa erythrocyte memb 97.8 7.8E-06 2.7E-10 77.7 2.7 32 387-418 13-44 (197)
353 1t9h_A YLOQ, probable GTPase E 97.8 2.4E-06 8.3E-11 86.9 -1.2 36 93-128 168-203 (307)
354 3tau_A Guanylate kinase, GMP k 97.8 1.3E-05 4.5E-10 76.7 4.0 29 96-124 6-34 (208)
355 3t34_A Dynamin-related protein 97.8 3.5E-05 1.2E-09 80.2 7.4 34 85-121 24-57 (360)
356 3ice_A Transcription terminati 97.7 2.8E-06 9.7E-11 88.1 -1.1 52 366-417 133-198 (422)
357 2z43_A DNA repair and recombin 97.7 8.5E-05 2.9E-09 76.1 10.0 27 94-120 103-129 (324)
358 2dhr_A FTSH; AAA+ protein, hex 97.7 1.1E-07 3.7E-12 103.2 -12.6 49 73-123 41-89 (499)
359 1zu4_A FTSY; GTPase, signal re 97.7 4.3E-06 1.5E-10 85.7 -0.1 44 383-426 95-138 (320)
360 2ffh_A Protein (FFH); SRP54, s 97.7 1.9E-05 6.6E-10 83.8 4.8 49 75-127 79-127 (425)
361 1svm_A Large T antigen; AAA+ f 97.7 5E-06 1.7E-10 87.0 -0.1 134 86-228 157-312 (377)
362 2ffh_A Protein (FFH); SRP54, s 97.7 4.8E-05 1.6E-09 80.7 7.1 163 384-559 91-274 (425)
363 3lxx_A GTPase IMAP family memb 97.7 0.00016 5.4E-09 70.4 10.4 114 395-540 31-154 (239)
364 3tqc_A Pantothenate kinase; bi 97.7 4.8E-06 1.6E-10 85.2 -0.7 125 381-518 74-211 (321)
365 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.4E-05 8.2E-10 70.9 4.0 29 90-119 16-44 (149)
366 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5.2E-10 73.3 2.6 28 392-419 3-30 (173)
367 3b9p_A CG5977-PA, isoform A; A 97.7 0.00021 7.3E-09 71.7 11.2 57 201-257 97-170 (297)
368 3tqc_A Pantothenate kinase; bi 97.6 1.1E-06 3.7E-11 90.0 -6.0 48 76-123 64-117 (321)
369 3bh0_A DNAB-like replicative h 97.6 5E-05 1.7E-09 77.5 6.2 34 382-415 57-90 (315)
370 4dcu_A GTP-binding protein ENG 97.6 0.0001 3.5E-09 79.2 8.9 175 100-415 25-217 (456)
371 1ixz_A ATP-dependent metallopr 97.6 7.4E-06 2.5E-10 80.7 -0.2 56 367-427 26-81 (254)
372 3kl4_A SRP54, signal recogniti 97.6 0.0002 7E-09 76.0 10.8 112 97-245 96-210 (433)
373 2vp4_A Deoxynucleoside kinase; 97.6 2E-05 6.8E-10 76.7 2.6 29 93-121 15-43 (230)
374 3cr8_A Sulfate adenylyltranfer 97.6 1.1E-05 3.9E-10 88.5 0.9 37 389-425 365-402 (552)
375 1iy2_A ATP-dependent metallopr 97.6 1E-05 3.5E-10 81.0 0.3 128 368-513 51-195 (278)
376 1knq_A Gluconate kinase; ALFA/ 97.6 2E-05 6.7E-10 72.8 2.1 33 391-427 6-38 (175)
377 3b9p_A CG5977-PA, isoform A; A 97.6 0.00019 6.7E-09 72.0 9.4 101 392-543 53-170 (297)
378 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.6E-05 1.2E-09 69.7 3.4 30 384-414 15-44 (149)
379 1kag_A SKI, shikimate kinase I 97.5 3.1E-05 1.1E-09 71.2 2.9 27 97-123 3-29 (173)
380 1knq_A Gluconate kinase; ALFA/ 97.5 3.8E-05 1.3E-09 70.9 3.3 27 96-122 6-32 (175)
381 3ice_A Transcription terminati 97.5 1.2E-05 4.3E-10 83.3 -0.1 50 72-121 133-197 (422)
382 3ney_A 55 kDa erythrocyte memb 97.5 3.5E-05 1.2E-09 73.2 2.9 32 92-123 13-44 (197)
383 2z4s_A Chromosomal replication 97.5 4.6E-05 1.6E-09 81.6 3.4 40 502-541 193-236 (440)
384 2z4s_A Chromosomal replication 97.4 0.00022 7.7E-09 76.2 8.3 41 216-256 193-237 (440)
385 1rz3_A Hypothetical protein rb 97.4 3.5E-05 1.2E-09 73.2 1.7 31 95-125 19-49 (201)
386 1cke_A CK, MSSA, protein (cyti 97.4 1.7E-05 5.9E-10 76.4 -0.8 34 393-426 5-41 (227)
387 2qt1_A Nicotinamide riboside k 97.4 5.6E-05 1.9E-09 71.9 2.6 30 389-418 17-46 (207)
388 2dy1_A Elongation factor G; tr 97.4 5.7E-05 2E-09 85.0 2.9 48 210-259 92-139 (665)
389 2p67_A LAO/AO transport system 97.4 3.4E-06 1.1E-10 87.3 -6.8 54 72-125 30-83 (341)
390 1u94_A RECA protein, recombina 97.4 0.0012 4E-08 68.5 12.4 136 389-560 59-234 (356)
391 3qks_A DNA double-strand break 97.4 9.9E-05 3.4E-09 70.4 3.8 29 90-119 16-44 (203)
392 1zu4_A FTSY; GTPase, signal re 97.3 3.3E-05 1.1E-09 79.1 0.5 40 88-127 95-134 (320)
393 2q6t_A DNAB replication FORK h 97.3 0.00073 2.5E-08 72.3 10.9 163 382-556 189-396 (444)
394 2p67_A LAO/AO transport system 97.3 1.5E-05 5.1E-10 82.4 -2.3 47 380-426 43-89 (341)
395 4eaq_A DTMP kinase, thymidylat 97.3 7.2E-05 2.5E-09 72.7 2.5 43 383-426 13-58 (229)
396 2qt1_A Nicotinamide riboside k 97.3 8E-05 2.7E-09 70.8 2.4 29 94-122 17-45 (207)
397 1ypw_A Transitional endoplasmi 97.3 9.4E-05 3.2E-09 85.1 3.1 31 388-418 233-263 (806)
398 3lxx_A GTPase IMAP family memb 97.3 0.00043 1.5E-08 67.3 7.3 39 216-254 111-154 (239)
399 3cr8_A Sulfate adenylyltranfer 97.2 5.7E-05 1.9E-09 82.9 0.6 33 94-126 365-397 (552)
400 3cf0_A Transitional endoplasmi 97.2 0.0004 1.4E-08 70.2 6.7 29 94-122 45-73 (301)
401 3qks_A DNA double-strand break 97.2 0.00025 8.5E-09 67.5 4.9 30 384-414 15-44 (203)
402 2pez_A Bifunctional 3'-phospho 97.2 7.5E-05 2.6E-09 69.2 0.8 31 391-422 3-33 (179)
403 2www_A Methylmalonic aciduria 97.2 9.2E-05 3.2E-09 76.7 1.5 34 392-425 73-106 (349)
404 4eaq_A DTMP kinase, thymidylat 97.1 0.00018 6.2E-09 69.9 3.1 37 88-124 13-52 (229)
405 1cke_A CK, MSSA, protein (cyti 97.1 0.00024 8E-09 68.3 3.4 25 98-122 5-29 (227)
406 1f6b_A SAR1; gtpases, N-termin 97.1 9.8E-05 3.4E-09 69.6 0.3 42 373-415 6-47 (198)
407 1y63_A LMAJ004144AAA protein; 97.0 0.00025 8.4E-09 66.2 3.0 32 90-121 2-33 (184)
408 2pez_A Bifunctional 3'-phospho 97.0 0.0003 1E-08 65.1 3.5 27 96-122 3-29 (179)
409 1u94_A RECA protein, recombina 97.0 0.0051 1.7E-07 63.7 13.0 25 95-119 60-84 (356)
410 3m6a_A ATP-dependent protease 97.0 6.7E-05 2.3E-09 82.5 -1.5 56 369-426 86-141 (543)
411 2w58_A DNAI, primosome compone 97.0 0.0004 1.4E-08 65.5 3.8 26 394-419 55-80 (202)
412 2q6t_A DNAB replication FORK h 97.0 0.0026 9E-08 67.9 10.7 130 86-254 188-318 (444)
413 2if2_A Dephospho-COA kinase; a 97.0 0.00027 9.1E-09 66.8 2.6 21 395-415 3-23 (204)
414 2if2_A Dephospho-COA kinase; a 96.9 0.00033 1.1E-08 66.2 2.8 21 100-120 3-23 (204)
415 3m6a_A ATP-dependent protease 96.9 2.1E-05 7.2E-10 86.5 -6.4 51 74-125 85-135 (543)
416 2qag_A Septin-2, protein NEDD5 96.9 6.1E-05 2.1E-09 78.5 -2.7 44 72-121 17-60 (361)
417 2qor_A Guanylate kinase; phosp 96.9 0.00039 1.3E-08 65.9 3.2 29 94-122 8-36 (204)
418 1m7g_A Adenylylsulfate kinase; 96.9 0.00015 5.1E-09 69.3 0.2 35 388-422 20-54 (211)
419 1y63_A LMAJ004144AAA protein; 96.9 0.0004 1.4E-08 64.7 3.0 32 385-416 2-33 (184)
420 1l8q_A Chromosomal replication 96.9 0.0018 6.1E-08 65.9 7.8 25 98-122 37-61 (324)
421 4fcw_A Chaperone protein CLPB; 96.8 0.00034 1.2E-08 70.5 2.3 35 210-245 111-146 (311)
422 3llm_A ATP-dependent RNA helic 96.8 0.0013 4.3E-08 63.9 6.2 63 486-550 161-228 (235)
423 2yvu_A Probable adenylyl-sulfa 96.8 0.00029 9.8E-09 65.7 1.5 35 390-424 10-44 (186)
424 4fcw_A Chaperone protein CLPB; 96.8 0.0012 4.2E-08 66.4 6.3 31 394-424 48-78 (311)
425 2qag_A Septin-2, protein NEDD5 96.8 0.00011 3.7E-09 76.6 -1.7 52 365-423 16-67 (361)
426 2gj8_A MNME, tRNA modification 96.8 0.00058 2E-08 62.6 3.4 27 392-418 3-29 (172)
427 1l8q_A Chromosomal replication 96.8 0.001 3.6E-08 67.6 5.6 27 393-419 37-63 (324)
428 2qor_A Guanylate kinase; phosp 96.8 0.00055 1.9E-08 64.8 3.2 29 390-418 9-37 (204)
429 1njg_A DNA polymerase III subu 96.8 0.00064 2.2E-08 64.9 3.7 42 502-544 125-168 (250)
430 2gj8_A MNME, tRNA modification 96.8 0.00054 1.9E-08 62.9 3.0 27 96-122 2-28 (172)
431 1j8m_F SRP54, signal recogniti 96.8 0.00015 5.3E-09 73.3 -1.0 42 384-426 89-131 (297)
432 2i1q_A DNA repair and recombin 96.8 0.0017 5.8E-08 66.1 6.7 27 389-415 94-120 (322)
433 1m2o_B GTP-binding protein SAR 96.7 0.00076 2.6E-08 62.9 3.6 33 382-415 13-45 (190)
434 1sxj_C Activator 1 40 kDa subu 96.7 6.9E-05 2.4E-09 77.1 -4.1 47 77-123 23-71 (340)
435 1njg_A DNA polymerase III subu 96.7 0.0021 7.1E-08 61.2 6.6 42 216-258 125-168 (250)
436 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00075 2.6E-08 70.7 3.6 37 390-426 19-66 (396)
437 2zej_A Dardarin, leucine-rich 96.7 0.00084 2.9E-08 62.1 3.5 28 395-422 4-31 (184)
438 2wji_A Ferrous iron transport 96.7 0.0011 3.6E-08 60.3 4.1 24 395-418 5-28 (165)
439 2v1u_A Cell division control p 96.7 0.0023 7.9E-08 66.1 6.9 127 391-543 42-178 (387)
440 2dhr_A FTSH; AAA+ protein, hex 96.6 0.00038 1.3E-08 75.4 0.9 55 368-427 42-96 (499)
441 3cm0_A Adenylate kinase; ATP-b 96.6 0.00086 2.9E-08 62.1 3.1 25 96-120 2-26 (186)
442 1mky_A Probable GTP-binding pr 96.6 0.0014 4.8E-08 69.9 4.9 34 395-428 182-227 (439)
443 1f6b_A SAR1; gtpases, N-termin 96.6 0.00019 6.5E-09 67.6 -1.8 41 79-120 6-47 (198)
444 3h4m_A Proteasome-activating n 96.6 0.0033 1.1E-07 62.4 7.2 27 391-417 49-75 (285)
445 2yvu_A Probable adenylyl-sulfa 96.6 0.0011 3.8E-08 61.5 3.4 29 95-123 10-38 (186)
446 2www_A Methylmalonic aciduria 96.6 0.001 3.4E-08 68.8 3.3 29 97-125 73-101 (349)
447 2wji_A Ferrous iron transport 96.6 0.0011 3.9E-08 60.0 3.4 23 100-122 5-27 (165)
448 1m2o_B GTP-binding protein SAR 96.6 0.00096 3.3E-08 62.2 2.9 34 86-120 12-45 (190)
449 3t61_A Gluconokinase; PSI-biol 96.6 0.001 3.5E-08 62.7 3.1 24 98-121 18-41 (202)
450 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00028 9.4E-09 72.7 -1.1 36 86-121 10-47 (359)
451 3t61_A Gluconokinase; PSI-biol 96.5 0.00093 3.2E-08 63.0 2.6 25 393-417 18-42 (202)
452 1xp8_A RECA protein, recombina 96.5 0.018 6.2E-07 59.7 12.5 27 389-415 70-96 (366)
453 3h4m_A Proteasome-activating n 96.5 0.0023 7.9E-08 63.6 5.6 27 96-122 49-75 (285)
454 1ega_A Protein (GTP-binding pr 96.5 0.00081 2.8E-08 68.0 2.1 61 200-267 101-170 (301)
455 1q3t_A Cytidylate kinase; nucl 96.5 0.0014 4.8E-08 63.6 3.6 26 95-120 13-38 (236)
456 3cm0_A Adenylate kinase; ATP-b 96.5 0.0011 3.7E-08 61.4 2.6 24 392-415 3-26 (186)
457 3dm5_A SRP54, signal recogniti 96.5 0.015 5E-07 61.8 11.6 28 392-419 99-126 (443)
458 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00029 9.8E-09 72.6 -1.5 36 382-417 11-48 (359)
459 1m7g_A Adenylylsulfate kinase; 96.4 0.0012 4E-08 62.9 2.6 30 94-123 21-50 (211)
460 1q3t_A Cytidylate kinase; nucl 96.4 0.0014 4.8E-08 63.5 3.1 28 390-417 13-40 (236)
461 1j8m_F SRP54, signal recogniti 96.4 0.00023 7.9E-09 72.0 -2.7 49 74-125 76-125 (297)
462 1np6_A Molybdopterin-guanine d 96.4 0.00082 2.8E-08 62.4 1.3 28 393-420 6-33 (174)
463 2b8t_A Thymidine kinase; deoxy 96.4 0.0055 1.9E-07 59.1 7.0 52 217-270 89-150 (223)
464 2wjg_A FEOB, ferrous iron tran 96.4 0.0018 6E-08 59.7 3.3 22 395-416 9-30 (188)
465 1xp8_A RECA protein, recombina 96.3 0.025 8.5E-07 58.7 12.3 26 94-119 70-95 (366)
466 1sxj_C Activator 1 40 kDa subu 96.3 0.00022 7.5E-09 73.4 -3.3 43 380-422 31-75 (340)
467 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.2E-08 58.8 3.2 22 100-121 3-24 (173)
468 2wjg_A FEOB, ferrous iron tran 96.3 0.002 6.8E-08 59.4 3.3 22 100-121 9-30 (188)
469 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.5E-08 58.9 3.6 25 98-122 3-27 (178)
470 2zej_A Dardarin, leucine-rich 96.3 0.0021 7E-08 59.4 3.3 22 100-121 4-25 (184)
471 3kb2_A SPBC2 prophage-derived 96.2 0.0021 7.3E-08 58.3 3.2 23 395-417 3-25 (173)
472 1lv7_A FTSH; alpha/beta domain 96.2 0.0015 5.1E-08 64.1 2.2 31 90-122 39-69 (257)
473 2v1u_A Cell division control p 96.2 0.0028 9.6E-08 65.4 4.4 25 96-120 42-66 (387)
474 1qhx_A CPT, protein (chloramph 96.2 0.0028 9.7E-08 58.1 3.7 26 393-418 3-28 (178)
475 1lv7_A FTSH; alpha/beta domain 96.2 0.0014 4.9E-08 64.2 1.7 23 396-418 48-70 (257)
476 1np6_A Molybdopterin-guanine d 96.1 0.0028 9.6E-08 58.7 3.4 24 99-122 7-30 (174)
477 3r20_A Cytidylate kinase; stru 96.1 0.0016 5.3E-08 63.4 1.7 25 393-417 9-33 (233)
478 1q57_A DNA primase/helicase; d 96.1 0.057 2E-06 58.3 14.3 32 88-119 232-263 (503)
479 3lw7_A Adenylate kinase relate 96.1 0.0028 9.4E-08 57.5 3.2 19 100-118 3-21 (179)
480 1kht_A Adenylate kinase; phosp 96.1 0.003 1E-07 58.4 3.6 23 98-120 3-25 (192)
481 3r20_A Cytidylate kinase; stru 96.1 0.0028 9.7E-08 61.6 3.3 23 98-120 9-31 (233)
482 2b8t_A Thymidine kinase; deoxy 96.1 0.0042 1.4E-07 59.9 4.5 52 503-556 89-150 (223)
483 1via_A Shikimate kinase; struc 96.1 0.0027 9.1E-08 58.3 2.9 22 100-121 6-27 (175)
484 1vht_A Dephospho-COA kinase; s 96.0 0.0033 1.1E-07 59.9 3.5 24 97-120 3-26 (218)
485 3lw7_A Adenylate kinase relate 96.0 0.0033 1.1E-07 57.0 3.2 19 395-413 3-21 (179)
486 1kht_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 57.7 3.6 25 393-417 3-27 (192)
487 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 58.6 3.3 21 100-120 2-22 (205)
488 2rhm_A Putative kinase; P-loop 96.0 0.0028 9.7E-08 58.8 2.6 25 96-120 3-27 (193)
489 1via_A Shikimate kinase; struc 95.9 0.0032 1.1E-07 57.8 2.8 23 395-417 6-28 (175)
490 2ze6_A Isopentenyl transferase 95.9 0.0036 1.2E-07 61.5 3.3 21 100-120 3-23 (253)
491 2p5t_B PEZT; postsegregational 95.9 0.0026 8.9E-08 62.4 2.3 28 95-122 29-56 (253)
492 3bgw_A DNAB-like replicative h 95.9 0.014 4.7E-07 62.3 8.0 53 200-254 263-318 (444)
493 3trf_A Shikimate kinase, SK; a 95.9 0.0042 1.4E-07 57.4 3.5 24 97-120 4-27 (185)
494 2jaq_A Deoxyguanosine kinase; 95.9 0.0039 1.3E-07 58.3 3.3 23 395-417 2-24 (205)
495 2ze6_A Isopentenyl transferase 95.9 0.0034 1.2E-07 61.7 2.8 23 395-417 3-25 (253)
496 1q57_A DNA primase/helicase; d 95.9 0.082 2.8E-06 57.1 14.0 27 389-415 238-264 (503)
497 3iij_A Coilin-interacting nucl 95.9 0.0041 1.4E-07 57.3 3.2 25 96-120 9-33 (180)
498 1ex7_A Guanylate kinase; subst 95.8 0.0039 1.3E-07 58.4 3.0 18 101-118 4-21 (186)
499 3dm5_A SRP54, signal recogniti 95.8 0.053 1.8E-06 57.5 12.0 27 97-123 99-125 (443)
500 1ly1_A Polynucleotide kinase; 95.8 0.0045 1.5E-07 56.6 3.3 22 99-120 3-24 (181)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5e-77 Score=684.67 Aligned_cols=426 Identities=32% Similarity=0.607 Sum_probs=323.6
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..|...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|-...... ... ... . .+.
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~-------~~~-~~~----~-~~v 500 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFP-------TQE-ECR----T-VYV 500 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCC-------CTT-TSC----E-EET
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-------ccc-cee----E-EEE
Confidence 468888999999999999999999999999999999999999999999841111000 000 000 0 000
Q ss_pred ccc----CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 151 AQE----DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 151 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
.+. .......+.+.. .... . +.++.++|+.+||.....++++.+|||||||||+|||||+.+|+|||||||
T Consensus 501 ~q~~~~~~~~ltv~e~l~~--~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFE--SGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHT--TCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccccccccCCcHHHHHHH--hhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 111 011222233321 1111 1 567889999999965567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHH
Q 007982 227 TNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQI 306 (582)
Q Consensus 227 t~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (582)
|||||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+++.+.|+++++.......
T Consensus 576 Ts~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~--------------- 640 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA--------------- 640 (986)
T ss_dssp TTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGG---------------
T ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHH---------------
Confidence 99999999999999998877899999999999999999999999999977789988765311000
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC------CCCCCeEEEEEEEEEecCC-
Q 007982 307 ASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG------KLPPPVLQFVEVTFGYTPD- 379 (582)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~~y~~~- 379 (582)
..+.. +..... .+.++.++ ....++|+++|++|+|++.
T Consensus 641 -------~~~~~------------------l~~~~~----------~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~ 685 (986)
T 2iw3_A 641 -------KAYEE------------------LSNTDL----------EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS 685 (986)
T ss_dssp -------GGSSS------------------TTTCCC----------CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCS
T ss_pred -------HHHHh------------------hhhhhh----------hccccccccccccccCCCceEEEEeeEEEeCCCC
Confidence 00000 000000 01111111 1235689999999999642
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc--CCcccHHHHHH---
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL--DMDMSALQYMI--- 454 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~--~~~~~~~~~~~--- 454 (582)
+++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++..+++|++|+....+ ....++.+++.
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999987778999988742110 00111111100
Q ss_pred --------------------------------------------------------------------------------
Q 007982 455 -------------------------------------------------------------------------------- 454 (582)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (582)
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~ 845 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEE
T ss_pred hccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhh
Confidence
Q ss_pred -----------------------hc-CCCChHHHHHHHHHhcCCCCcc-ccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 455 -----------------------KE-YPGNEEEKMRAAIGRFGLTGKA-QVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 455 -----------------------~~-~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
.. +.....++++++|+.+||.... .++++.+|||||||||+|||+|+.+|+||||
T Consensus 846 ~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLL 925 (986)
T 2iw3_A 846 PRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925 (986)
T ss_dssp EGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 0111245678899999997543 3567799999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcC
Q 007982 510 DEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEG 565 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g 565 (582)
||||+|||+.+...+.+.|+++++|||+||||++++..+||+||+|++|+++. .|
T Consensus 926 DEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~-~G 980 (986)
T 2iw3_A 926 DEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP-SG 980 (986)
T ss_dssp ECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred ECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eC
Confidence 99999999999999999999999999999999999999999999999999863 44
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.5e-76 Score=647.66 Aligned_cols=442 Identities=19% Similarity=0.265 Sum_probs=316.1
Q ss_pred eEE-eeeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeee-----echHHHHH-HHH
Q 007982 73 IRI-ESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI-----SCDEERLK-LEK 144 (582)
Q Consensus 73 i~v-~nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i-----~~~~~~~~-~~~ 144 (582)
.++ +||+|+|+++ .+++++| +|++||+++|+||||||||||+|+|+|+.+|+.|...... .+.+.... ...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 344 6999999886 4899999 9999999999999999999999999999988766421000 01111110 000
Q ss_pred HHH----HhccccCCCc--ch--HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 145 EAE----ILGAQEDGGG--EQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 145 ~~~----~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
... .+........ .. ...+.+.+.. .....++.++|+.+||.. ..++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~---~~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK---ADETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH---HCSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh---hhHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence 000 0111000000 00 0011111110 111245788999999975 5789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE--EEcCChhHHHHhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK--FYTGNFDQYVQTRSEL 291 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~--~~~g~~~~~~~~~~~~ 291 (582)
+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...+.. +..
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~----~~~- 250 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGT----RNG- 250 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HHH-
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhH----HHH-
Confidence 99999999999999999999999998765 789999999999999999999999864321 12222211 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC--CCCCCeEEE
Q 007982 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG--KLPPPVLQF 369 (582)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 369 (582)
+..+...... . ... . .......+.++... ....+++++
T Consensus 251 -----------------~~~~~~~~~~--~------------------~~~--~-~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (538)
T 1yqt_A 251 -----------------INEFLRGYLK--D------------------ENV--R-FRPYEIKFTKTGERVEIERETLVTY 290 (538)
T ss_dssp -----------------HHHHHHTEET--T------------------TTE--E-CSSSCCCCCCSSGGGSSCCCEEEEE
T ss_pred -----------------HHHHhhhccc--h------------------hhh--c-ccccccccccCCcccccCCCeEEEE
Confidence 0000000000 0 000 0 00000001111111 123578999
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccH
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSA 449 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~ 449 (582)
+|+++.|++ ..|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.. ...++|++|+... .+..++
T Consensus 291 ~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~--~~~~tv 364 (538)
T 1yqt_A 291 PRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKA--DYEGTV 364 (538)
T ss_dssp CCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCC--CCSSBH
T ss_pred eeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcC--CCCCcH
Confidence 999999953 4789999999999999999999999999999999999999999976 3469999998642 345566
Q ss_pred HHHHHhc-CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007982 450 LQYMIKE-YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA 527 (582)
Q Consensus 450 ~~~~~~~-~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 527 (582)
.+++... .. ....+.++++++.+|+.+.. .+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~ 443 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 443 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 6654321 00 01245678899999997544 567799999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHH
Q 007982 528 LNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKL 572 (582)
Q Consensus 528 l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~ 572 (582)
|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++..
T Consensus 444 l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~ 493 (538)
T 1yqt_A 444 IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE 493 (538)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence 8764 68999999999999999999999986 6665 4788877665
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-76 Score=655.16 Aligned_cols=444 Identities=18% Similarity=0.264 Sum_probs=321.1
Q ss_pred ceEE--------eeeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeee-----echH
Q 007982 72 DIRI--------ESLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVI-----SCDE 137 (582)
Q Consensus 72 ~i~v--------~nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i-----~~~~ 137 (582)
.|++ +||+++|+++ .+|+++| +|++||+++|+||||||||||+|+|+|+.+|+.|...... .+.+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 9999999876 4999999 9999999999999999999999999999988766521000 0111
Q ss_pred HHHH-H-HHHHH-H--hccccCCC--cch--HHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH
Q 007982 138 ERLK-L-EKEAE-I--LGAQEDGG--GEQ--LERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI 208 (582)
Q Consensus 138 ~~~~-~-~~~~~-~--~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 208 (582)
.... . ..... . +....... ... ...+.+.+... ....++.++|+.+||.+ ..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence 1110 0 00000 0 11100000 000 00122222111 11245788999999975 57899999999999999
Q ss_pred HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEE--EEcCChhH
Q 007982 209 ALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLK--FYTGNFDQ 283 (582)
Q Consensus 209 ~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~--~~~g~~~~ 283 (582)
+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+++... .+...+..
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~ 317 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 317 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhH
Confidence 9999999999999999999999999999999998766 789999999999999999999999865321 11111110
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCC--C
Q 007982 284 YVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVG--K 361 (582)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 361 (582)
+.. +..+...+... . .+ .. ......+.+.... .
T Consensus 318 ----~~~------------------i~~~~~~~~~~-~--------------~~---~~-----~~~~~~~~~~~~~~~~ 352 (607)
T 3bk7_A 318 ----RNG------------------INEFLQGYLKD-E--------------NV---RF-----RPYEIRFTKLSERVDV 352 (607)
T ss_dssp ----HHH------------------HHHHHHTEETT-T--------------TE---EC-----CSSCCCCCCSTTSCCC
T ss_pred ----HHH------------------HHHHHhhcchh-h--------------hh---hc-----cccccccccCCCcccc
Confidence 000 00011100000 0 00 00 0000011111111 1
Q ss_pred CCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhh
Q 007982 362 LPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAE 441 (582)
Q Consensus 362 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~ 441 (582)
...++++++|+++.|++ ..|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|.. ...++|++|+...
T Consensus 353 ~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 353 ERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKA 428 (607)
T ss_dssp CCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCC
T ss_pred cCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccC
Confidence 23568999999999963 4789999999999999999999999999999999999999999976 3469999998642
Q ss_pred hcCCcccHHHHHHhc-CCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 007982 442 KLDMDMSALQYMIKE-YPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE 519 (582)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~ 519 (582)
.+..|+.+++... ... ...+.+.++++.+|+.+.. ++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 429 --~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 429 --EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp --CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred --CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 3456776655331 000 1235678899999998654 4677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHHH
Q 007982 520 TIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKLH 573 (582)
Q Consensus 520 ~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 573 (582)
++..+.++|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++...
T Consensus 506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~~ 564 (607)
T 3bk7_A 506 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHhh
Confidence 999999998764 67999999999999999999999986 6664 47888877653
No 4
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-72 Score=624.10 Aligned_cols=441 Identities=17% Similarity=0.234 Sum_probs=308.6
Q ss_pred eeEEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeech-------HHHH-HHHH-HH
Q 007982 77 SLSVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCD-------EERL-KLEK-EA 146 (582)
Q Consensus 77 nls~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~-------~~~~-~~~~-~~ 146 (582)
|++++|+.. ..+.+++ .+++|+++||+||||||||||||+|+|+..|+.|.+.....+. +... .... ..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 457888754 4666666 6899999999999999999999999999998876542111110 0000 0000 00
Q ss_pred -HHhcc-ccCCCcchHH--------HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 147 -EILGA-QEDGGGEQLE--------RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 147 -~~~~~-~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
..+.. .......... .+...+.. .......++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence 00000 0000000000 11111110 01112357889999999975 5789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEE--cCChhHHHHhHHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFY--TGNFDQYVQTRSEL 291 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~--~g~~~~~~~~~~~~ 291 (582)
+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+. ..+... +..
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~----~~~- 313 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV----REG- 313 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH----HHH-
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH----HHH-
Confidence 99999999999999999999999998776 67999999999999999999999987654211 111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEE
Q 007982 292 EENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVE 371 (582)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (582)
...++..... .... .. ......+.... ......+...+
T Consensus 314 -----------------~~~~~~~~~~--------------------~~~~--~~-~~~~~~~~~~~--~~~~~~~~~~~ 351 (608)
T 3j16_B 314 -----------------INIFLDGHIP--------------------AENL--RF-RTEALQFRIAD--ATEDLQNDSAS 351 (608)
T ss_dssp -----------------HHHHHHTEET--------------------TTTE--EC-SSSCCCCCCSS--SSCCCCCCSSS
T ss_pred -----------------HHHhhccccc--------------------hhhh--cc-ccccccccccc--cccceeeeccc
Confidence 0000000000 0000 00 00000011100 00111222356
Q ss_pred EEEEecCCceeeEeeeEEEecC-----CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCc
Q 007982 372 VTFGYTPDNLIYKNLDFGVDLD-----SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 372 l~~~y~~~~~~l~~vsl~i~~G-----e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
++++|++...+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++|.... .+.
T Consensus 352 ~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~--~~~ 427 (608)
T 3j16_B 352 RAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAP--KFP 427 (608)
T ss_dssp SCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCC--CCC
T ss_pred eeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEecccccc--cCC
Confidence 7788865456889999999999 88999999999999999999999999999842 23468999997532 334
Q ss_pred ccHHHHHHhcCC--CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 447 MSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 447 ~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
.++.+++..... ......+.++++.+++.+.. ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 506 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHH
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHH
Confidence 567666543222 12345678899999998755 456799999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeC--CeEEEEcCCHHHHHHH
Q 007982 525 AEALNEW----DGGLVLVSHDFRLINQVAHEIWVCEN--QAVTRWEGDIMDFKLH 573 (582)
Q Consensus 525 ~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~ 573 (582)
.++|+++ +.|||+||||++++..+||||++|++ |++. ..|+++++...
T Consensus 507 ~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 507 SKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence 8888764 68999999999999999999999986 7875 58888887765
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.5e-71 Score=608.57 Aligned_cols=431 Identities=17% Similarity=0.245 Sum_probs=299.6
Q ss_pred eeeEEEECCeeeeEeeeEEEe-CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH-------HH-HHHHHH
Q 007982 76 ESLSVTFHGHDLIVDSELELN-YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE-------RL-KLEKEA 146 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~-~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~-------~~-~~~~~~ 146 (582)
++.+.+|+.. -|+-..|.+. +||++|||||||||||||+|+|+|+..|+.|.+.....+... .. ......
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 3567888643 2444455544 899999999999999999999999998876654211111110 00 000000
Q ss_pred H--Hh--c--cccCCCcchH--HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 E--IL--G--AQEDGGGEQL--ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~--~~--~--~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
. .. . .+........ ..+.+.+.. .....++.++++.+|+.. ..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK---IDERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH---HCCSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc---chhHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 0 00 0 0000000000 001111110 111235778999999964 578999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE--EcCChhHHHHhHHHHHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKF--YTGNFDQYVQTRSELEEN 294 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~~~~~~~ 294 (582)
+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|...+ +...+.. +..
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~----~~~---- 229 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA----RVG---- 229 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HHH----
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccchhhhH----HHH----
Confidence 999999999999999999999999876 6899999999999999999999998754321 1111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEE
Q 007982 295 QMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTF 374 (582)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 374 (582)
+..++..+... .. +.............. ..........++++++++++
T Consensus 230 --------------~~~~~~g~~~~-~~--------------~~~r~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~ 277 (538)
T 3ozx_A 230 --------------INNFLKGYLPA-EN--------------MKIRPDEIKFMLKEV---SDLDLSKDLKTKMKWTKIIK 277 (538)
T ss_dssp --------------HHHHHHTEETT-TT--------------EECSSSCCCCSCC-------------CCEEEEECCEEE
T ss_pred --------------HHHHHhhhchh-hh--------------hhccchhhhcccccc---ccccccccccceEEEcceEE
Confidence 00111110000 00 000000000000000 00000012356899999999
Q ss_pred EecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHH
Q 007982 375 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 375 ~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
.|++ ..|.++||+|.+||++||+||||||||||+++|+|+++|++|+|...+ ..++|++|.... .+..++.+++.
T Consensus 278 ~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~--~~~~tv~~~l~ 352 (538)
T 3ozx_A 278 KLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFP--NYDGTVQQYLE 352 (538)
T ss_dssp EETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCC--CCSSBHHHHHH
T ss_pred EECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhccc--ccCCCHHHHHH
Confidence 9963 568888999999999999999999999999999999999999998754 468999987532 34567777664
Q ss_pred hcCC---CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 455 KEYP---GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 455 ~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
.... ......+.++++.+|+.... ++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++
T Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 353 NASKDALSTSSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp HHCSSTTCTTSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HhhhhccchhHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 3211 12234578899999998654 4667999999999999999999999999999999999999999999988764
Q ss_pred ----CceEEEEecCHHHHHhhcCEEEEEeC
Q 007982 532 ----DGGLVLVSHDFRLINQVAHEIWVCEN 557 (582)
Q Consensus 532 ----~~tvi~vsHd~~~~~~~~d~i~~l~~ 557 (582)
+.|||+||||++++..+||||++|++
T Consensus 432 ~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 432 TRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 67999999999999999999999986
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.8e-69 Score=646.17 Aligned_cols=203 Identities=27% Similarity=0.337 Sum_probs=169.3
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
..|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999742 36999999999999999999999999999999999999999999998763 35
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC--CChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP--GNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAra 499 (582)
++|++|++. .+..|+.+++....+ ....+++.++++..++.+..... ...+|||||||||+||||
T Consensus 1109 i~~v~Q~~~---l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI---LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC---CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc---cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 899999863 346789998864322 22445566666666654332222 235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+|+||||||||++||+.+...+.+.|++. +.|||+||||++++. .||||++|++|+|++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 569999999999985 599999999999975 789888754
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-66 Score=624.96 Aligned_cols=202 Identities=28% Similarity=0.364 Sum_probs=174.4
Q ss_pred eEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 366 VLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
-|+++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|..++. .++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999743 46999999999999999999999999999999999999999999998763 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC--CCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHH
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY--PGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral 500 (582)
++++|++. -++-|+.+++.... +..+.+++.++++..++.++....| ..+||||||||++|||||
T Consensus 1156 ~~V~Qdp~---LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT---LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE---eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999863 35679999976432 2345678889998888754332222 357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+++|+||||||||++||+++...+.+.|++. ++|+|+|+|.+..+ ..||+|+||++|+|++ .|+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~IvE-~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTIIE-KGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSEEE-EECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999886 67999999999998 4699999999999987 799998875
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=9.9e-67 Score=592.08 Aligned_cols=426 Identities=22% Similarity=0.274 Sum_probs=268.2
Q ss_pred CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhcCCCCCCCceee---eeechHHH
Q 007982 84 GHDLIVDSELELNYGRRYGLLGLNGCGKSTLL---------------------TAIGEIEASDMSSLEA---VISCDEER 139 (582)
Q Consensus 84 ~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl---------------------~~l~~~~~~~~~~~~~---~i~~~~~~ 139 (582)
...+|+||||+|++||++||+||||||||||+ ++++++..++.+.+.+ .+.++...
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 7778877776443211 11111110
Q ss_pred HHH--HHHHHHh--------------c--cccC-----CCcchHHHHHH--HHH--cCChhHHH------HHHHHHHHhC
Q 007982 140 LKL--EKEAEIL--------------G--AQED-----GGGEQLERVYE--RLE--ALDASTAE------KRAAEILYGL 186 (582)
Q Consensus 140 ~~~--~~~~~~~--------------~--~~~~-----~~~~~~~~~~~--~l~--~~~~~~~~------~~~~~~l~~l 186 (582)
... ......+ . .+.. ......+++.. .+. .......+ ....++|+.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 000 0000000 0 0000 00011111100 000 00000000 1122468899
Q ss_pred CCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHh
Q 007982 187 GFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNG 261 (582)
Q Consensus 187 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~ 261 (582)
||.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|+++|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 997544688999999999999999999999998 99999999999999999999998765 689999999999876
Q ss_pred hcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 007982 262 VCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLA 335 (582)
Q Consensus 262 ~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (582)
.||+|++| ++|+++ +.|+++++........ .
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~~~~---------------------~--------------------- 305 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNSLT---------------------G--------------------- 305 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHHTCTTCHH---------------------H---------------------
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHhcCchhHH---------------------H---------------------
Confidence 59999999 889986 4677766542110000 0
Q ss_pred HHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh-
Q 007982 336 KMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT- 414 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~- 414 (582)
........... .. .........+.+.+.. ..+|+||||+|++||++||+||||||||||+++|.
T Consensus 306 ~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~ 370 (670)
T 3ux8_A 306 QYLSGKKFIPI-PA--------ERRRPDGRWLEVVGAR------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLY 370 (670)
T ss_dssp HHHTTSSCCCC-CS--------SCCCCCSCEEEEEEEC------STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHH
T ss_pred HHhcccccccc-cc--------ccccccccceeecCcc------ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHH
Confidence 00000000000 00 0001112344444432 35799999999999999999999999999998753
Q ss_pred ---------------------CCCCCCCcEEEEcCcee-----------E------------------------------
Q 007982 415 ---------------------GDLVPLDGMVRRHNHLR-----------I------------------------------ 432 (582)
Q Consensus 415 ---------------------Gl~~p~~G~i~~~~~~~-----------~------------------------------ 432 (582)
|+..+ .|.|...+... .
T Consensus 371 ~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (670)
T 3ux8_A 371 KALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNV 449 (670)
T ss_dssp HHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTS
T ss_pred HHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccC
Confidence 22222 23333221100 0
Q ss_pred -----------EEechhhh---h---------------------------hcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 433 -----------AQFHQHLA---E---------------------------KLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 433 -----------~~~~q~~~---~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
+++.+.+. . ......++.+++..........+..+.+..
T Consensus 450 ~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~ 529 (670)
T 3ux8_A 450 KGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYD 529 (670)
T ss_dssp TTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 00000000 0 000023444444322111223456778889
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHH
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLI 545 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~ 545 (582)
+|+.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+++ +.|||+||||++++
T Consensus 530 ~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 530 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI 609 (670)
T ss_dssp TTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred cCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 9997544456778999999999999999998875 99999999999999999999988765 67999999999988
Q ss_pred HhhcCEEEEE------eCCeEEEEcCCHHHHH
Q 007982 546 NQVAHEIWVC------ENQAVTRWEGDIMDFK 571 (582)
Q Consensus 546 ~~~~d~i~~l------~~G~i~~~~g~~~~~~ 571 (582)
..||||++| ++|+|+ ++|+++++.
T Consensus 610 -~~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 610 -KTADYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp -TTCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred -HhCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 569999999 899997 589988874
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-52 Score=475.04 Aligned_cols=334 Identities=23% Similarity=0.311 Sum_probs=237.5
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEE
Q 007982 178 RAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVI 252 (582)
Q Consensus 178 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviiv 252 (582)
+..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||+|||+..+.+|+++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345678899997544688999999999999999999999887 99999999999999999999999876 5799999
Q ss_pred ecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHH
Q 007982 253 SHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQ 326 (582)
Q Consensus 253 sHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (582)
|||++++.. ||+|++| ++|+++ +.|+++++....... ...
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~~~~~~-------------------------------~~~- 568 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLKNPDSS-------------------------------LTG- 568 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHHSCTTC-------------------------------HHH-
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEE-EeechhhhhcCchhc-------------------------------chh-
Confidence 999999875 9999999 889886 678888765321100 000
Q ss_pred HHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcH
Q 007982 327 AQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGK 406 (582)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGK 406 (582)
..+.... ... .+.....+...+++++++ ...|+||||+|+.|++++|+|||||||
T Consensus 569 --------~~l~~~~-~~~----------~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGK 623 (916)
T 3pih_A 569 --------EYLSGKR-KIT----------VNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGK 623 (916)
T ss_dssp --------HHHHSSS-CCC----------CCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSH
T ss_pred --------hhhhccc-ccc----------cccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCCh
Confidence 0000000 000 000111223456666653 236899999999999999999999999
Q ss_pred HHHH---------HHHhCCCCCCCcEEEEcCc-----------eeE----------------------------------
Q 007982 407 STLL---------KLMTGDLVPLDGMVRRHNH-----------LRI---------------------------------- 432 (582)
Q Consensus 407 STLl---------~ll~Gl~~p~~G~i~~~~~-----------~~~---------------------------------- 432 (582)
|||+ +++.|...+..+.....+. ..+
T Consensus 624 STLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~ 703 (916)
T 3pih_A 624 SSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYN 703 (916)
T ss_dssp HHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCC
T ss_pred hhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccc
Confidence 9997 4555544333221111110 000
Q ss_pred -------------------EEechhhhh-------------------hc-----------CCcccHHHHHHhcCCCChHH
Q 007982 433 -------------------AQFHQHLAE-------------------KL-----------DMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 433 -------------------~~~~q~~~~-------------------~~-----------~~~~~~~~~~~~~~~~~~~~ 463 (582)
|++.+.... .+ ...+++.+.+..........
T Consensus 704 ~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~ 783 (916)
T 3pih_A 704 KSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIK 783 (916)
T ss_dssp GGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHH
T ss_pred cccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHH
Confidence 000000000 00 00122222222111112235
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVL 537 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~ 537 (582)
++.++|+.+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|.+.|+++ +.|||+
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv 863 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 67789999999765555778999999999999999999875 799999999999999999999998765 679999
Q ss_pred EecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 538 VSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 538 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
||||++++. .||+|++| ++|+|+ +.|+++++.+
T Consensus 864 I~HdL~~i~-~ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 864 IEHNLDVIK-NADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EeCCHHHHH-hCCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999985 59999999 899997 5899998864
No 10
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-51 Score=470.69 Aligned_cols=334 Identities=21% Similarity=0.246 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhh---cCcE
Q 007982 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKK---FDRI 248 (582)
Q Consensus 174 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~t 248 (582)
++..++. .|..+||.....++++.+|||||+|||+||++|+.+| .+|||||||++||+..+.+|.++|++ .+.|
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 3455665 6889999743368999999999999999999999999 49999999999999999999997755 4789
Q ss_pred EEEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q 007982 249 LVVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAK 322 (582)
Q Consensus 249 viivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (582)
||+||||++++. .||+|++| ++|+++ +.|+++++........ ..+
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~~-----------------~~~---------- 484 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQT-----------------GQY---------- 484 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCHH-----------------HHH----------
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHHH-----------------HHH----------
Confidence 999999999875 79999999 688886 6789887753211000 000
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCC
Q 007982 323 LARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPN 402 (582)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~N 402 (582)
+....... . + ....+.++|+++++++. .|+||||+|+.|+++||+|+|
T Consensus 485 --------------l~~~~~~~---~-~--------~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~n 532 (842)
T 2vf7_A 485 --------------LFADRHTE---P-H--------TPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVS 532 (842)
T ss_dssp --------------HHTCCCCC---C-C--------CCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEEECCT
T ss_pred --------------hhhccccc---c-c--------ccCCCCceEEEEeeeec------ccccceEEEcCCCEEEEEcCC
Confidence 00000000 0 0 01123568999999851 599999999999999999999
Q ss_pred CCcHHHHHHH-HhCCC-------CCCCcEEE------------EcC---c-eeEEEechhhh------------------
Q 007982 403 GAGKSTLLKL-MTGDL-------VPLDGMVR------------RHN---H-LRIAQFHQHLA------------------ 440 (582)
Q Consensus 403 GsGKSTLl~l-l~Gl~-------~p~~G~i~------------~~~---~-~~~~~~~q~~~------------------ 440 (582)
|||||||++. |+|++ .|+.|.+. ..+ . ....++.|...
T Consensus 533 GSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~i 612 (842)
T 2vf7_A 533 GSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQV 612 (842)
T ss_dssp TSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHH
Confidence 9999999996 66543 34334331 001 0 00111111100
Q ss_pred ---------------------hh--------------------cC------------------------Ccc--------
Q 007982 441 ---------------------EK--------------------LD------------------------MDM-------- 447 (582)
Q Consensus 441 ---------------------~~--------------------~~------------------------~~~-------- 447 (582)
.+ +. ...
T Consensus 613 r~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~l 692 (842)
T 2vf7_A 613 RKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLAL 692 (842)
T ss_dssp HHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTC
T ss_pred HHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhc
Confidence 00 00 001
Q ss_pred cHHHHHHhcCCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHH
Q 007982 448 SALQYMIKEYPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ---PHMLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 448 ~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~---p~lLlLDEPt~~LD~~~~~~ 523 (582)
++.+.+. .+.. ...+++.++|+.+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..
T Consensus 693 tv~e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 693 TVDEAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp BHHHHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred cHHHHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 1222211 1111 12346788999999986444567789999999999999999996 79999999999999999999
Q ss_pred HHHHHHhc---CceEEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 524 LAEALNEW---DGGLVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 524 l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
|.++|+++ +.|||+||||++++ .+||+|++| ++|+|+ ++|+++++..
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~ 827 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQ 827 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHh
Confidence 99888764 67999999999999 789999999 689996 5899888753
No 11
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.7e-51 Score=470.96 Aligned_cols=336 Identities=21% Similarity=0.269 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC--CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN--PTILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~--P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
+..++ +.|..+||.....++++.+|||||+|||+||++|..+ |++|||||||++||+....+|.+.|+++ +.||
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 576 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 34454 4578899864336899999999999999999999999 5899999999999999999999887654 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKL 323 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (582)
|+||||++++. .||+|++| ++|+++ +.|+++++........ .
T Consensus 577 IvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~~~~~lt-----------------~------------- 624 (993)
T 2ygr_A 577 IVVEHDEDTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLRNKDSIT-----------------G------------- 624 (993)
T ss_dssp EEECCCHHHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHHCTTCHH-----------------H-------------
T ss_pred EEECCCHHHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhhhhHHHH-----------------H-------------
Confidence 99999999986 79999999 678886 6789887754211000 0
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCC
Q 007982 324 ARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNG 403 (582)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NG 403 (582)
..+.+..... ....+ ....+.++|++++++. ..|+||||+|+.|+++||+|+||
T Consensus 625 -----------~~l~g~~~~~-~~~~~--------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nG 678 (993)
T 2ygr_A 625 -----------AYLSGRESIE-IPAIR--------RSVDPRRQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSG 678 (993)
T ss_dssp -----------HHHHTSSCCC-CCSSC--------CCCCSSSEEEEEEECS------TTCCSEEEEEESSSEEEEECSTT
T ss_pred -----------HHhccCcccc-Ccccc--------ccCCCCceEEEecCcc------ccccCceEEECCCCEEEEEcCCC
Confidence 0011100000 00000 0001136899999862 25899999999999999999999
Q ss_pred CcHHHHHHHHh-CC----CC---CCCcEE-EEcCc---ee---------------------------------------E
Q 007982 404 AGKSTLLKLMT-GD----LV---PLDGMV-RRHNH---LR---------------------------------------I 432 (582)
Q Consensus 404 sGKSTLl~ll~-Gl----~~---p~~G~i-~~~~~---~~---------------------------------------~ 432 (582)
||||||+++|. |. +. +..|.+ ...+. .+ .
T Consensus 679 SGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~ 758 (993)
T 2ygr_A 679 SGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVR 758 (993)
T ss_dssp SSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 21 21 234543 11110 00 1
Q ss_pred EEechhhhhhc--------------------C--------------------------------CcccHHHHHHhcCCC-
Q 007982 433 AQFHQHLAEKL--------------------D--------------------------------MDMSALQYMIKEYPG- 459 (582)
Q Consensus 433 ~~~~q~~~~~~--------------------~--------------------------------~~~~~~~~~~~~~~~- 459 (582)
+|.++.+.... . ..+++.+.+.. +..
T Consensus 759 gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~-~~~~ 837 (993)
T 2ygr_A 759 GYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEF-FEPI 837 (993)
T ss_dssp TCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHH-STTC
T ss_pred cccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHH-hhcc
Confidence 11112110000 0 01122222221 111
Q ss_pred ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---Cc
Q 007982 460 NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DG 533 (582)
Q Consensus 460 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 533 (582)
....+..++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.
T Consensus 838 ~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 917 (993)
T 2ygr_A 838 AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN 917 (993)
T ss_dssp HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 122345678999999763345677899999999999999999865 999999999999999999999988764 67
Q ss_pred eEEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 534 GLVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 534 tvi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
|||+||||++++ .+||+|++| ++|+++ ++|+++++..
T Consensus 918 TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999999999998 589999999 689996 5899988764
No 12
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.5e-51 Score=469.76 Aligned_cols=335 Identities=20% Similarity=0.264 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
+..++ ++|..+||.....++++.+|||||+|||+||++|..+| ++|||||||++||+....+|.+.|+++ +.||
T Consensus 481 i~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 559 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 559 (972)
T ss_dssp HHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34454 46889999643368999999999999999999999985 999999999999999999999887654 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKL 323 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (582)
|+||||++++. .||+|++| ++|+++ +.|+++++.......
T Consensus 560 IvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~~~~sl-------------------------------- 605 (972)
T 2r6f_A 560 IVVEHDEDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNSL-------------------------------- 605 (972)
T ss_dssp EEECCCHHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTTCTTCT--------------------------------
T ss_pred EEEecCHHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHhhhHHH--------------------------------
Confidence 99999999986 69999999 688886 678888765311000
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCC
Q 007982 324 ARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNG 403 (582)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NG 403 (582)
.. ..+.+..... .... ......+.|++++++. ..|+||||+|+.|+++||+|+||
T Consensus 606 t~---------~~l~g~~~~~-~~~~---------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nG 660 (972)
T 2r6f_A 606 TG---------QYLSGKKFIP-IPAE---------RRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSG 660 (972)
T ss_dssp TH---------HHHHTSSCCC-CCSS---------CCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTT
T ss_pred HH---------HHhcCCcccc-Cccc---------cccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCC
Confidence 00 0011100000 0000 0011236899999862 26999999999999999999999
Q ss_pred CcHHHHHHHHh-CCC-------CCCCcE-------------EEEcCce------------------------------eE
Q 007982 404 AGKSTLLKLMT-GDL-------VPLDGM-------------VRRHNHL------------------------------RI 432 (582)
Q Consensus 404 sGKSTLl~ll~-Gl~-------~p~~G~-------------i~~~~~~------------------------------~~ 432 (582)
||||||+++|+ |.+ .+..|. |...+.. ..
T Consensus 661 SGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~ 740 (972)
T 2r6f_A 661 SGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVR 740 (972)
T ss_dssp SSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHh
Confidence 99999999853 221 123342 2221110 01
Q ss_pred EEechhhhhhcC----------------------------------------------------CcccHHHHHHhcCCC-
Q 007982 433 AQFHQHLAEKLD----------------------------------------------------MDMSALQYMIKEYPG- 459 (582)
Q Consensus 433 ~~~~q~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~- 459 (582)
+|.+|.+..... ..+++.+.+.. +..
T Consensus 741 Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~-~~~~ 819 (972)
T 2r6f_A 741 GYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDF-FASI 819 (972)
T ss_dssp TCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHH-TCSC
T ss_pred cccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHH-Hhcc
Confidence 222221110000 01223333221 111
Q ss_pred ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---Cc
Q 007982 460 NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP---HMLLLDEPTNHLDIETIDSLAEALNEW---DG 533 (582)
Q Consensus 460 ~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 533 (582)
....++.++|+.+||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.+.|+++ +.
T Consensus 820 ~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 899 (972)
T 2r6f_A 820 PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 122345788999999863445677899999999999999999865 999999999999999999999988764 67
Q ss_pred eEEEEecCHHHHHhhcCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 534 GLVLVSHDFRLINQVAHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 534 tvi~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
|||+||||++++ .+||+|++| ++|+|+ +.|+++++..
T Consensus 900 TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 900 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 999999999998 589999999 689996 5888887753
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.4e-46 Score=377.35 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=176.9
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------e
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~ 430 (582)
.++|+++||+++|++...+|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 468999999999975556999999999999999999999999999999999999999999987653 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|++...+ +..|+.+++... .... ..+++.++++.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHHcCC
Confidence 4899999864333 357888876532 1111 245688999999997655 4567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|+++ ++|+++++..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 999999999999999999999888654 579999999999999999999999999997 5899988754
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-45 Score=384.22 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=176.9
Q ss_pred CCCeEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------
Q 007982 363 PPPVLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------- 429 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------- 429 (582)
..++|+++||+++|+++ ..+|+||||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45789999999999642 46899999999999999999999999999999999999999999987652
Q ss_pred ----eeEEEechhhhhhcCCcccHHHHHHhc---C--CC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH
Q 007982 430 ----LRIAQFHQHLAEKLDMDMSALQYMIKE---Y--PG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL 499 (582)
Q Consensus 430 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra 499 (582)
..++|++|++. +....|+.+++... . +. ...+++.++|+.+||.+... +++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHH
Confidence 25899999863 55667888877532 1 11 12456889999999987654 5568999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 500 AYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 500 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.++||||++|++|+++ ..|++.++..
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~~ 253 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVFS 253 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHHS
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999999988764 679999999999999999999999999997 5899888753
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.6e-46 Score=366.98 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=168.7
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------- 429 (582)
+|+++||+++|+++ ..+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47999999999642 36999999999999999999999999999999999999999999998652
Q ss_pred --eeEEEechhhhhhcCCcccHHHHHHhc--CC---C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 430 --LRIAQFHQHLAEKLDMDMSALQYMIKE--YP---G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 430 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~---~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
..++|++|++. +....|+.+++... .. . . ..+++.++++.+|+.+...++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14899999863 45567888876431 11 1 1 23567889999999865435667899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+ .+||+|++|++|+++. +++..++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~~ 233 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGFD 233 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC---
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhhc
Confidence 999999999999999999999999999988764 67999999999965 7999999999999974 66665543
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.1e-45 Score=366.57 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=177.5
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
+.++|+++|+++.|+ ++++|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 8 ~~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 8 PVALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred CcceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 346899999999996 478999999999999999999999999999999999999999999998653 23
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC---C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc-----
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY---P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR----- 502 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~----- 502 (582)
++|++|... +.+..|+.+++.... . ....+++.++++.+|+.+... +++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-SBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcccccC
Confidence 789998753 345678888875421 1 234567889999999987654 5668999999999999999999
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 -QPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 -~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++ ++|+++++..
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 237 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVLN 237 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHCC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhC
Confidence 99999999999999999999999998765 359999999999999999999999999997 5899988753
No 17
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9.6e-45 Score=377.74 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=175.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------ee
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~ 431 (582)
++|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999996 478999999999999999999999999999999999999999999987542 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCC-----CC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYP-----GN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|++. +.+.+|+.+++..... .. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+
T Consensus 82 ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 82 LGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-RYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 5667899998865321 11 2457889999999987655 5568999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALN----EWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+|+ ..|+++++..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~ 228 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR 228 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999999988876554 34789999999999999999999999999997 5899988765
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-45 Score=367.34 Aligned_cols=204 Identities=22% Similarity=0.362 Sum_probs=173.2
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
.++|+++|++++|+ +.++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 4 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 4 ENKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred CceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 35799999999996 467999999999999999999999999999999999999999999987652
Q ss_pred ----------eeEEEechhhhhhcCCcccHHHHHHh---cCCC-C---hHHHHHHHHHhcCCCCc-cccCCCCCCChhHH
Q 007982 430 ----------LRIAQFHQHLAEKLDMDMSALQYMIK---EYPG-N---EEEKMRAAIGRFGLTGK-AQVMPMKNLSDGQR 491 (582)
Q Consensus 430 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~l~~~gl~~~-~~~~~~~~LSgGqk 491 (582)
..++|++|... +....|+.+++.. .... . ..+++.++++.+||.+. .. +++.+||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~ 159 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQ 159 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHH
T ss_pred cChhhHHHHhcceEEEecCcc--cCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHH
Confidence 13789998742 4456688877643 1111 1 23568889999999865 44 56689999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHH
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIM 568 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 568 (582)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ ..|+++
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~ 238 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPE 238 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 9999999999999999999999999999999999988765 679999999999999999999999999997 478887
Q ss_pred HHHH
Q 007982 569 DFKL 572 (582)
Q Consensus 569 ~~~~ 572 (582)
++..
T Consensus 239 ~~~~ 242 (262)
T 1b0u_A 239 QVFG 242 (262)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.1e-45 Score=364.82 Aligned_cols=203 Identities=22% Similarity=0.308 Sum_probs=174.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------ee
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~~ 431 (582)
++|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999996 467999999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc---CCC-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE---YPG-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
++|++|... +....|+.+++... +.. . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCC
Confidence 899999853 44556887776431 111 1 2356788999999976554 567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 248 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLFD 248 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999998765 679999999999999999999999999997 4788888754
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-44 Score=358.42 Aligned_cols=204 Identities=20% Similarity=0.256 Sum_probs=174.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 4 ~~~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 468999999999964 67999999999999999999999999999999999999999999987652 13
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcC----CCC-hHHHHHHHHHhcC-CCCccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEY----PGN-EEEKMRAAIGRFG-LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH 505 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~l~~~g-l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 505 (582)
++|++|... +....|+.+++.... ... ..+.+.++++.++ +.... ++++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999753 445568888875421 111 2356778899994 86654 45678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++.++..
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 228 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHHT
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHhc
Confidence 99999999999999999999998765 579999999999999999999999999996 5788887753
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.9e-45 Score=364.23 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=173.0
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------ee
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LR 431 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~ 431 (582)
.++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 46899999999996 467999999999999999999999999999999999999999999987652 14
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc--C---C------------CC--hHHHHHHHHHhcCCCCccccCCCCCCChhHHH
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE--Y---P------------GN--EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRS 492 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~--~---~------------~~--~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkq 492 (582)
++|++|+.. +....|+.+++... . . .. ..+++.++++.+|+.+.. ++++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHH
Confidence 899999853 34456888877532 1 1 11 235678899999997654 4567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|+++ +.|++++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999999999999999998765 679999999999999999999999999997 4788877
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-44 Score=356.16 Aligned_cols=196 Identities=23% Similarity=0.305 Sum_probs=167.1
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------------- 429 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------------- 429 (582)
++|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 47999999999964 67999999999999999999999999999999999999999999987642
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhc---CCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKE---YPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..++|++|.+. +....|+.+++... ... ...+++.++++.+|+.+... +++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 24899999753 44556787776431 111 12356788999999987654 56689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCC
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGD 566 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~ 566 (582)
|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++ .+||+|++|++|+++ ++|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence 9999999999999999999999988765 67999999999998 899999999999996 3553
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-44 Score=367.25 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=175.1
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-------------e
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------~ 430 (582)
.++|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 19 ~~~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 468999999999964 67999999999999999999999999999999999999999999988652 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcC---------CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEY---------PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
.++|++|.....+....|+.+++.... ... ..+++.++++.+||.+.. ++++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHH
Confidence 489999986433333458888875321 111 235678899999997654 456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGL--VLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+.+|+||||||||+|||+.++..+.+.|+++ +.|| |+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999998765 5789 99999999999999999999999996 578888764
No 24
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.4e-44 Score=377.21 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=176.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 468999999999999999999999999999999999999999999987653 3599999
Q ss_pred hhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 56678898887532 1 111 2457889999999987655 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++ ..|+++++..
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~ 223 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH 223 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence 999999999999988887654 689999999999999999999999999997 5889888754
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-44 Score=359.80 Aligned_cols=204 Identities=22% Similarity=0.329 Sum_probs=174.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc----------eeEE
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH----------LRIA 433 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~----------~~~~ 433 (582)
.++|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 46899999999996 468999999999999999999999999999999999999999999988653 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhc---CCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---YPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|... +....|+.+++... +... ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+||
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853 34456887776431 1111 1346788999999986554 567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 235 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE 235 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence 999999999999999999998765 579999999999999999999999999996 5788887754
No 26
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.4e-44 Score=372.95 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=177.4
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEE
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIA 433 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~ 433 (582)
+.++|+++|++++|+++..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4578999999999932457999999999999999999999999999999999999999999988652 3589
Q ss_pred EechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML 507 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL 507 (582)
|++|+.. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|+||
T Consensus 91 ~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 91 LVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863 55667888887532 1 111 2456889999999987654 556899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 508 LLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 508 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 235 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVYE 235 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999888664 679999999999999999999999999996 5789888764
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.4e-44 Score=356.68 Aligned_cols=200 Identities=25% Similarity=0.377 Sum_probs=171.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
++|+++|++++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|... ..++|++|... +.
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cC
Confidence 379999999999624679999999999999999999999999999999999999999999843 35899999853 33
Q ss_pred CcccHHHHHHhcC---------CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 445 MDMSALQYMIKEY---------PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 445 ~~~~~~~~~~~~~---------~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
...|+.+++.... ... ..+++.++++.+|+.+.. ++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4568888775321 111 235688999999998655 45678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 515 HLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + +.|+++++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 6799999999999999999999999999 5 578887764
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-43 Score=358.16 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=174.9
Q ss_pred eEEEEEEEEEec-CC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEE
Q 007982 366 VLQFVEVTFGYT-PD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~-~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~ 433 (582)
+|+++|++++|+ ++ +++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996 23 57999999999999999999999999999999999999999999998763 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcC----CC-ChHHHHHHHHHhcCCC--CccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY----PG-NEEEKMRAAIGRFGLT--GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHM 506 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~gl~--~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 506 (582)
|++|++... .+..|+.+++.... +. ...+++.++++.+|+. +... +++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGG-CCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhh-cCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999985322 24578888875421 11 2346788999999998 6554 56689999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 507 LLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 507 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|++.++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 227 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE 227 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 9999999999999999999998765 579999999999999999999999999996 5788877754
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-44 Score=353.71 Aligned_cols=199 Identities=28% Similarity=0.356 Sum_probs=170.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|++ +|+|+||+|++ ++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ml~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 4789999999953 59999999999 999999999999999999999999999999988652 2478888
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--C--ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--G--NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
|... +....|+.+++..... . ...+++.++++.+|+.+... +++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 8753 4455688888754321 1 12456889999999986554 56689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+|||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 216 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999998764 679999999999999999999999999997 5788887754
No 30
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-43 Score=369.08 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=175.9
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999996 467999999999999999999999999999999999999999999988652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--CCh----HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--GNE----EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++..... ... .+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNYA--LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD-RKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSCC--CCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 4567789998864321 111 346889999999987654 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 223 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD 223 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999888664 679999999999999999999999999996 5789988765
No 31
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-43 Score=355.64 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=167.5
Q ss_pred ceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER-----LKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~-----~~~~~~ 145 (582)
+|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|+.|. +.+++.. ......
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~----I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR----ILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCCSHHHHHHH
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE----EEECCEECCcccccHHHH
Confidence 7999999999975 56999999999999999999999999999999999999887554 3333221 111122
Q ss_pred HHHhcc--ccC----CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 AEILGA--QED----GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 ~~~~~~--~~~----~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ |.+ ....+.+++..... ..+..+..+++.++|+.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 233332 221 12244555543332 2455666788999999999964 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++ +.|+++++..
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence 9999999999999999999999988654 679999999999999999999999999997 4678777653
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-43 Score=369.97 Aligned_cols=202 Identities=23% Similarity=0.279 Sum_probs=175.3
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999996 467999999999999999999999999999999999999999999987652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhc-----CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKE-----YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++... .+.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-RYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-CChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 45667888887532 1111 2356889999999987655 456899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~~ 223 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVYY 223 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999888764 679999999999999999999999999997 4788888764
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.6e-43 Score=362.41 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=172.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
..|+++||+|+|+++.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 46999999999976678999999999999999999999999999999999999999999998763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|.+. + +..|+.+++.........+++.++++.+++...... .+..+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--L-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--C-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--c-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999863 2 356999988754333344556667766666433222 23468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|+||||||||++||+.+...|.+.|.++ +.|||+||||++.+.. ||+|++|++|+|+. .|+++++..
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 6799999999999976 99999999999974 899888764
No 34
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.1e-43 Score=352.79 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=165.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ......
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI----IIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE----EECCEECCCccccHHHHh
Confidence 7999999999999999999999999999999999999999999999999998875543 2222111 011112
Q ss_pred HHhcc--ccCC---CcchHHHHHHHH-H--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 147 EILGA--QEDG---GGEQLERVYERL-E--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 147 ~~~~~--~~~~---~~~~~~~~~~~l-~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
..+++ |... .....+++.... . .......++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 23332 2221 123444443321 1 2334455678899999999964 568999999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999998765 6799999999999999999999999999974 57776654
No 35
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-43 Score=369.57 Aligned_cols=202 Identities=21% Similarity=0.268 Sum_probs=172.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..++|++
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 599999999996 467999999999999999999999999999999999999999999988652 3589999
Q ss_pred hhhhhhcCCcccHHHHHHhcCC--C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYMIKEYP--G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|+.. +.+.+|+.+++..... . . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||
T Consensus 90 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-RYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-SCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9864 4567799998864321 1 1 1356889999999987654 556899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 231 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL 231 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 999999999999999888764 679999999999999999999999999997 4789888764
No 36
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.5e-43 Score=368.28 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=174.9
Q ss_pred eEEEEEEEEEecCCce--eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------------
Q 007982 366 VLQFVEVTFGYTPDNL--IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-------------- 429 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~--~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-------------- 429 (582)
+|+++|++++|++ .. +|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+.
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 5899999999964 56 999999999999999999999999999999999999999999986542
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHhcCC--C-C---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIKEYP--G-N---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..++|++|+.. +.+.+|+.+++..... . . ..+++.++++.+||.+... +++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence 24899999853 5566789988764321 1 1 2356889999999987654 55689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~ 230 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD 230 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999999999888764 679999999999999999999999999997 4788888754
No 37
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.9e-43 Score=351.27 Aligned_cols=202 Identities=24% Similarity=0.361 Sum_probs=169.3
Q ss_pred eEEEEEEEEEec-CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 366 VLQFVEVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 366 ~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
-++++||+|+|+ +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3467999999999999999999999999999999999999999999988652 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|.+. +. ..|+.+++....+....+++.++++.+++...... .++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNV--LL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCC--CT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999853 22 35888887543222334567778888877543322 24579999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~~ 232 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELLS 232 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHHT
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999998876 679999999999986 59999999999997 4788877643
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.8e-43 Score=368.01 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=173.8
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEec
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFH 436 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~ 436 (582)
||+++|++++|++ . +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|...+. ..++|++
T Consensus 1 ml~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 4789999999964 5 999999999999999999999999999999999999999999998763 2489999
Q ss_pred hhhhhhcCCcccHHHHHHhcC----CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 007982 437 QHLAEKLDMDMSALQYMIKEY----PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP 512 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP 512 (582)
|+.. +.+.+|+.+++.... .... +++.++++.+||.+... +++.+|||||||||+|||||+.+|++||||||
T Consensus 79 Q~~~--l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 79 QNYS--LFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred cCcc--cCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9853 455678888765321 1122 67899999999987655 45689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 513 TNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 513 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|+++++..
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 217 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFE 217 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHS
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999888764 679999999999999999999999999997 4788888753
No 39
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.7e-43 Score=365.16 Aligned_cols=209 Identities=26% Similarity=0.426 Sum_probs=168.3
Q ss_pred cceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------
Q 007982 71 RDIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------ 140 (582)
Q Consensus 71 ~~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------ 140 (582)
.+|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+.+|+.|.+ .+++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I----~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV----LVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE----EECCEECCcCCHH
Confidence 47999999999963 479999999999999999999999999999999999999885543 3322111
Q ss_pred HHHHHHHHhcc--ccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH
Q 007982 141 KLEKEAEILGA--QEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 141 ~~~~~~~~~~~--~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 213 (582)
........+++ |... ..++.+++...+. ..+..+.++++.++|+.+||.+ ..++++.+|||||||||+||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence 11111223332 2221 2344555544332 3456677788999999999975 5789999999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|+||||||||++||+.++..++++|+++ +.|||+||||++++..+||||++|++|+++ ..|+.++++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~ 252 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF 252 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999999999999998764 689999999999999999999999999997 567777655
No 40
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-43 Score=352.23 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=165.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------------
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------------ 139 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------------ 139 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI----IVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE----EECCEEcccccccccccc
Confidence 6999999999999999999999999999999999999999999999999999875543 222111
Q ss_pred ----HHHHHHHHHhcc--ccCC---CcchHHHHHHHH-H--cCChhHHHHHHHHHHHhCCCChhh-hhccCCCCChhHHH
Q 007982 140 ----LKLEKEAEILGA--QEDG---GGEQLERVYERL-E--ALDASTAEKRAAEILYGLGFNKTM-QAKKTRDFSGGWRM 206 (582)
Q Consensus 140 ----~~~~~~~~~~~~--~~~~---~~~~~~~~~~~l-~--~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrq 206 (582)
.........+++ |... ..++.+++.... . ..+....+.++.++++.+|+.+ . .++++.+|||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence 011111223332 2221 123444543321 1 2334455678899999999975 4 68899999999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999998765 6799999999999999999999999999974 577766
Q ss_pred HH
Q 007982 284 YV 285 (582)
Q Consensus 284 ~~ 285 (582)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4e-43 Score=368.84 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=174.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------L 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~ 430 (582)
+|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999995 467999999999999999999999999999999999999999999987542 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhc---C--CCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCC
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKE---Y--PGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP 504 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p 504 (582)
.++|++|+.. +.+.+|+.+++... . +.. ..+++.++++.+||.+... +++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 4899999853 45667888887532 1 111 2356889999999987654 556899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 505 HMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 505 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~ 229 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD 229 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHh
Confidence 999999999999999999998888664 679999999999999999999999999996 5789888764
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-43 Score=353.56 Aligned_cols=198 Identities=19% Similarity=0.332 Sum_probs=172.1
Q ss_pred eEEEEEEEEEecCC---ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEE-
Q 007982 366 VLQFVEVTFGYTPD---NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIA- 433 (582)
Q Consensus 366 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~- 433 (582)
+|+++|++++|++. +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 47899999999641 579999999999 9999999999999999999999999 99999988762 2588
Q ss_pred EechhhhhhcCCcccHHHHHHhc--CCCChHHHHHHHHHhcCCC-CccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKE--YPGNEEEKMRAAIGRFGLT-GKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|++|.+. + ..|+.+++... ......+++.++++.+|+. +.. ++++.+|||||||||+|||||+.+|++||||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999864 2 56787776432 1123456789999999998 654 4567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcC-EEEEEeCCeEEEEcCCHHHHH
Q 007982 511 EPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH-EIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 511 EPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||++||+.++..+.+.|+++..|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~ 214 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL 214 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence 9999999999999999999886699999999999999999 99999999996 578888775
No 43
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.1e-43 Score=353.73 Aligned_cols=208 Identities=21% Similarity=0.237 Sum_probs=164.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|+.|.+ .+++... ........
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC----HLLGQNLNSWQPKALART 86 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE----EETTEETTTSCHHHHHHH
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE----EECCEECCcCCHHHHhhe
Confidence 7999999999999999999999999999999999999999999999999999886643 2222111 11111222
Q ss_pred hcc--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc------C
Q 007982 149 LGA--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI------N 217 (582)
Q Consensus 149 ~~~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~ 217 (582)
+++ |... .....+++............++++.++++.+|+.+ ..++++.+|||||||||+|||||+. +
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 332 2211 12333333222112233445678899999999975 5688999999999999999999999 9
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|+++. .|+.+++.
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHC
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999998765 3599999999999999999999999999974 57766543
No 44
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-43 Score=350.48 Aligned_cols=202 Identities=24% Similarity=0.334 Sum_probs=170.4
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~~ 434 (582)
+|+++|++|+|+++.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999953467999999999999999999999999999999999999999999987652 24789
Q ss_pred echhhhhhcCCcccHHHHHHhc-CCCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHccC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKE-YPGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~~~ 503 (582)
++|.+. + +..|+.+++... ......+++.++++.+++.+.... .++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSA--I-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSC--C-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc--c-ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 998753 2 235888887543 222345567888999888765432 23579999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999999888765 679999999999985 69999999999996 5899888754
No 45
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.8e-42 Score=340.69 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=158.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH------HHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL------KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~------~~~~~ 145 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .....
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV----FLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE----EETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEECCCCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998875543 2222110 01111
Q ss_pred -HHHhcc--ccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 146 -AEILGA--QEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 146 -~~~~~~--~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
...+++ |... .....+++.... ........++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 123332 2221 123444443222 22333445678899999999975 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999998765 67999999999998 8999999999999974
No 46
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.2e-42 Score=341.30 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=159.7
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH------HH
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER------LK 141 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~------~~ 141 (582)
+|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++.. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I----~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV----YIDNIKTNDLDDDE 76 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE----EECCEEcccCCHHH
Confidence 4899999999973 469999999999999999999999999999999999999885543 322211 01
Q ss_pred HHH-HHHHhcc--ccCC---CcchHHHHHHHHH-----cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH
Q 007982 142 LEK-EAEILGA--QEDG---GGEQLERVYERLE-----ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL 210 (582)
Q Consensus 142 ~~~-~~~~~~~--~~~~---~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 210 (582)
... ....+++ |.+. ..+..+++...+. ........+++.++++.+|+.+...++++.+|||||||||+|
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 111 1122332 2221 1244455543322 223455667889999999997654588999999999999999
Q ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 211 ARALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 211 AraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++.+ .+||+|++|++|+++. .++.++
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~ 231 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRG 231 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC-
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhh
Confidence 99999999999999999999999999999998764 68999999999965 7999999999999974 344443
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.2e-43 Score=352.88 Aligned_cols=205 Identities=21% Similarity=0.301 Sum_probs=167.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCc------------
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNH------------ 429 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~------------ 429 (582)
.++|+++||+++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 46899999999995 46899999999999999999999999999999999999 4789999988653
Q ss_pred eeEEEechhhhhhcCCcccHHHHHHh---------cCCC-C---hHHHHHHHHHhcCCCCccccCCCC-CCChhHHHHHH
Q 007982 430 LRIAQFHQHLAEKLDMDMSALQYMIK---------EYPG-N---EEEKMRAAIGRFGLTGKAQVMPMK-NLSDGQRSRVV 495 (582)
Q Consensus 430 ~~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~~-~---~~~~~~~~l~~~gl~~~~~~~~~~-~LSgGqkqrv~ 495 (582)
..++|++|.+. +....++.+++.. .... . ..+++.++++.+|+.....++++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 12788888753 2334555554421 1111 1 134678899999996433345555 59999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHHHH
Q 007982 496 FAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 496 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
|||||+.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 253 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLVK 253 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999999999999999876 46999999999999886 9999999999997 578887765
Q ss_pred H
Q 007982 572 L 572 (582)
Q Consensus 572 ~ 572 (582)
.
T Consensus 254 ~ 254 (267)
T 2zu0_C 254 Q 254 (267)
T ss_dssp H
T ss_pred h
Confidence 3
No 48
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.3e-43 Score=367.42 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=164.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~ 146 (582)
+|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|.+ .+++... ......
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I----~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI----SLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE----EETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE----EECCEECcccccccchhh
Confidence 6999999999999999999999999999999999999999999999999999885543 2222111 000001
Q ss_pred HHhc--cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILG--AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~--~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..++ +|... ..++.+++...+. ..+..+.++++.++|+.+||.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1222 22221 1234444433222 2344566788999999999974 6789999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHh----hcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLK----KFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+..+..+.+.|. +.+.|+|+||||++++..+||||++|++|+++. .|+++++.
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 999999999999999998887553 447899999999999999999999999999974 57776654
No 49
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.3e-43 Score=365.54 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=167.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+|+|++..+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|. +.+++.... .......++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~----I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD----LFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE----EEECCEECCCCCHHHCCEE
Confidence 599999999999999999999999999999999999999999999999999988554 333322110 000001122
Q ss_pred --cccCC---CcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... ..++.+++...+ ...+..+.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22221 234455554433 24566677889999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||||++|++|+++. .|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l~ 222 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELY 222 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHHH
Confidence 9999999999999999888654 7899999999999999999999999999974 57766544
No 50
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-42 Score=349.18 Aligned_cols=206 Identities=20% Similarity=0.235 Sum_probs=161.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 147 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .......
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV----YFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE----EECCEECCCCCHHHHHhC
Confidence 7999999999999999999999999999999999999999999999999999875543 3322111 0111112
Q ss_pred HhccccCCC-----cchHHHHHHHHHc---------------CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 148 ILGAQEDGG-----GEQLERVYERLEA---------------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 148 ~~~~~~~~~-----~~~~~~~~~~l~~---------------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
.+++.++.. ....+++...... ......+.++.++++.+|+.+ ..++++.+||||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL 161 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHHH
Confidence 233222211 1233333221111 122344567899999999964 5789999999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhH
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 283 (582)
|+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 99999999999999999999999999999999998765 6899999999999999999999999999974 466665
No 51
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-42 Score=345.26 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=164.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH--HHHHHHHHh
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL--KLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 149 (582)
+|+++||+++|+++.+|+++||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ........+
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV----TVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTEETTTCHHHHHTTE
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE----EECCEECCccHHHHhhcE
Confidence 7999999999999999999999999999999999999999999999999998875543 3322111 011112223
Q ss_pred cc--ccCC---CcchHHHHHH--HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee
Q 007982 150 GA--QEDG---GGEQLERVYE--RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL 222 (582)
Q Consensus 150 ~~--~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl 222 (582)
++ |... ..+..+++.. .+........++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 169 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAI 169 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 32 2211 1233444422 2223344444567899999999974 5688999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 223 LDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 223 LDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 170 LDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 170 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999998765 6799999999999999999999999999974 56666543
No 52
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.9e-43 Score=348.58 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=161.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC--CCCCCcEEEEcCce------------e
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD--LVPLDGMVRRHNHL------------R 431 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl--~~p~~G~i~~~~~~------------~ 431 (582)
+|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 689999999996 46799999999999999999999999999999999999 78999999886531 2
Q ss_pred EEEechhhhhhcCCcccHHHHHHhc------C-CC--ChHHHHHHHHHhcCCCCccccCCCCC-CChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKE------Y-PG--NEEEKMRAAIGRFGLTGKAQVMPMKN-LSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~------~-~~--~~~~~~~~~l~~~gl~~~~~~~~~~~-LSgGqkqrv~lAral~ 501 (582)
++|++|.+. +....++.+++... . .. ...+++.++++.+|+.....++++.+ |||||||||+|||||+
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 567777643 33445676665321 1 11 11346788999999953333456688 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-cCEEEEEeCCeEEEEcCCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV-AHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~ 569 (582)
.+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+ ||+|++|++|+++ +.|+++.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 230 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPEL 230 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999999999999999876 46999999999999888 5999999999997 4788763
No 53
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.6e-42 Score=348.90 Aligned_cols=203 Identities=26% Similarity=0.349 Sum_probs=168.4
Q ss_pred CCeEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e
Q 007982 364 PPVLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~ 430 (582)
..+|+++||+++|++ ...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999964 257999999999999999999999999999999999999999999988652 2
Q ss_pred eEEEechhhhhhcCCcccHHHHHHhcCCC-Ch-H--------HHHHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHH
Q 007982 431 RIAQFHQHLAEKLDMDMSALQYMIKEYPG-NE-E--------EKMRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 431 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~-~--------~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
.++|++|.+. +. ..|+.+++...... .. . ..+.++++.+ |+..... +++.+|||||||||+|||
T Consensus 94 ~i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 94 QVAAVGQEPL--LF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HEEEECSSCC--CC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCc--cc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHH
Confidence 4899999863 22 35888887643211 11 1 1234566777 6765443 456899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 499 LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 499 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999999876 469999999999986 49999999999997 4788887754
No 54
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.8e-42 Score=338.21 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=164.0
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
.+|+++|++++|++ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|.+. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 47999999999963 46799999999999999999999999999999999999999999999987 5899999863 2
Q ss_pred CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 444 DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. ..|+.+++...... ......++++.+++..... ..++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~-~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 81 M-PGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp C-SBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred c-CCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 2 34888888643221 1223444555555532211 1235799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEA-LNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
++||+.++..+.+. +.++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 218 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 218 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999997 4444 579999999999986 59999999999997 5788887754
No 55
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.2e-42 Score=342.89 Aligned_cols=197 Identities=27% Similarity=0.350 Sum_probs=170.5
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
++|+++|++++ .+|+|+||+|.+|++++|+||||||||||+|+|+|+++|+ |+|.+.+. ..++
T Consensus 3 ~~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 3 IVMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred cEEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 37899999985 4899999999999999999999999999999999999999 99998763 2489
Q ss_pred EechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC-------
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH------- 505 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~------- 505 (582)
|++|+.. +....|+.+++.... .....+++.++++.+|+.+... +++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 77 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp EECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred EECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 9999853 345578888876421 1112567889999999986554 5678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 221 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 221 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999998765 579999999999999999999999999996 578888774
No 56
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-42 Score=341.50 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=161.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE-AE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~-~~ 147 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... ..... ..
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI----IFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE----EETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE----EECCEECCCCCHHHHHhC
Confidence 6999999999999999999999999999999999999999999999999998875543 3322111 01111 11
Q ss_pred Hhcc--ccCC---CcchHHHHHHHH-HcCChhHHHHHHHHHHHhCC-CChhhhhccCCCCChhHHHHHHHHHHHhcCCCc
Q 007982 148 ILGA--QEDG---GGEQLERVYERL-EALDASTAEKRAAEILYGLG-FNKTMQAKKTRDFSGGWRMRIALARALFINPTI 220 (582)
Q Consensus 148 ~~~~--~~~~---~~~~~~~~~~~l-~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~l 220 (582)
.+++ |... ..+..+++.... .........+++.++++.++ +.+ ..++++.+|||||||||+|||||+.+|++
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1332 2211 123334432211 11223345667888999994 854 56889999999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 221 LLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 221 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999998765 6799999999999999999999999999974 56666543
No 57
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.9e-42 Score=359.23 Aligned_cols=211 Identities=22% Similarity=0.314 Sum_probs=167.6
Q ss_pred CccceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHH
Q 007982 69 LSRDIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEA 146 (582)
Q Consensus 69 ~~~~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 146 (582)
++.+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+.|.+ .+++.... .....
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV----WIGGKRVTDLPPQK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTCCGGG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE----EECCEECCcCChhh
Confidence 45689999999999 88889999999999999999999999999999999999999885543 33221110 00001
Q ss_pred HHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 147 EILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 147 ~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
..++ +|.. +..+..+++...+. ..+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1122 1221 12344555544332 3455566788999999999974 6789999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|||||||++||+.++..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999988654 7899999999999999999999999999974 57776554
No 58
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-42 Score=352.08 Aligned_cols=208 Identities=21% Similarity=0.301 Sum_probs=160.7
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-----HHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-----KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~ 145 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|.+ .+++... .....
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I----~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV----NLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EETTBCCC---CCHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE----EECCEEcccccCCHHHH
Confidence 37999999999999999999999999999999999999999999999999998875543 3222111 01111
Q ss_pred HHHhcc--cc-----CCCcchHHHHHHHH------HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 146 AEILGA--QE-----DGGGEQLERVYERL------EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~-----~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
...+++ |. .......+++.... .........+++.++++.+|+.+ ..++++.+|||||||||+|||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHH
Confidence 112221 11 11113334432110 01112334567889999999964 568999999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEE--EEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRIL--VVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--iivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
||+.+|++|||||||++||+.++..+.++|+++ +.|| |+||||++++..+||+|++|++|+++. .|+++++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 250 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVEDI 250 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999999999999998765 6799 999999999999999999999999974 5666544
No 59
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-41 Score=342.51 Aligned_cols=202 Identities=22% Similarity=0.304 Sum_probs=168.1
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
++|+++|++|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.+.+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 579999999999643 4699999999999999999999999999999999999987 899988652 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcc----------ccCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA----------QVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~ 501 (582)
++|++|.+. + +..|+.+++.........+++.++++.+++.+.. ...++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l-~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--L-FNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--C-CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--c-cccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 899999863 2 2458888876432222345667778877764321 12345799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||+|++|++|+++ ..|++.++..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998876 579999999999985 59999999999997 4788887754
No 60
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.8e-42 Score=338.97 Aligned_cols=199 Identities=21% Similarity=0.285 Sum_probs=162.2
Q ss_pred eEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
+|+++|++++|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|.+. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963 35799999999999999999999999999999999999999999999987 4899999853 2
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHh------cCCCCc----cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGR------FGLTGK----AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~------~gl~~~----~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
+..|+.+++....... .+...++++. +++.+. ...+++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 4678888876432111 1122233333 332211 1234568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHH---hc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 515 HLDIETIDSLAEALN---EW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+||+.++..+.+.|. .+ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence 999999999999984 32 579999999999985 79999999999997 4788887754
No 61
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.2e-42 Score=357.50 Aligned_cols=208 Identities=26% Similarity=0.352 Sum_probs=166.3
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI----YFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGTTEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE----EECCEECCcCCHhHCcEE
Confidence 5999999999998899999999999999999999999999999999999999885543 33221110 000011232
Q ss_pred --cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|.. +.....+++...+. ..+..+.++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2222 12244555544332 3445566778999999999975 57899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57776654
No 62
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-42 Score=338.32 Aligned_cols=190 Identities=19% Similarity=0.315 Sum_probs=161.5
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------eeEEEech
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------LRIAQFHQ 437 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------~~~~~~~q 437 (582)
..+|+++|++++|++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 358999999999964 7999999999999999999999999999999999999999999998763 25899999
Q ss_pred hhhhhcCCcccHHHHHHhc---CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 438 HLAEKLDMDMSALQYMIKE---YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
.+. +....|+.+++... +. ....+++.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 853 34456887776431 11 2235678899999999876 5667899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 514 NHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
++||+.++..+.+.|+++ +.|||+||||++++..+||+|+++ .|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999998765 469999999999999999998854 4555
No 63
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-42 Score=357.96 Aligned_cols=208 Identities=26% Similarity=0.359 Sum_probs=163.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI----YFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGTTEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE----EECCEECCCCChhhCcEE
Confidence 5999999999999999999999999999999999999999999999999999885543 33221110 000011232
Q ss_pred --cccCC---CcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 --AQEDG---GGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 --~~~~~---~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+|... ..+..+++...+. ..+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22221 1233444432221 1122334568999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999988654 7899999999999999999999999999974 57776553
No 64
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-41 Score=357.93 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=166.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-------HHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-------LEK 144 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-------~~~ 144 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... ...
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI----YIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE----EETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE----EECCEECccccccccCCH
Confidence 6999999999999999999999999999999999999999999999999999885543 22221100 000
Q ss_pred HHHHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 145 EAEILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 145 ~~~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
....++ +|.. +.....+++...+. ..+....++++.++++.+||.+ ..++++.+|||||||||+|||||+.+
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 011222 2222 12344555544332 3455566778999999999964 67899999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 9999999999999999999999888654 7899999999999999999999999999974 57776654
No 65
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1e-41 Score=341.23 Aligned_cols=196 Identities=24% Similarity=0.306 Sum_probs=157.6
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. .. ..++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~----~~----------~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----VY----------QSIG 69 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE----EC----------SCEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----Ee----------ccEE
Confidence 699999999998 88999999999999999999999999999999999999998865442 00 0111
Q ss_pred --cccC---CCcchHHHHHHHHH---c---CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 151 --AQED---GGGEQLERVYERLE---A---LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 151 --~~~~---~~~~~~~~~~~~l~---~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
+|.. ......+++..... . ......++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1111 11233333322111 0 112334567899999999974 5688999999999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+ + +.|+++++
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 99999999999999999999998765 6799999999999999999999999999 5 45666544
No 66
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.3e-42 Score=344.96 Aligned_cols=207 Identities=22% Similarity=0.300 Sum_probs=160.4
Q ss_pred ceEEeeeEEEEC--C---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHH
Q 007982 72 DIRIESLSVTFH--G---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEA 146 (582)
Q Consensus 72 ~i~v~nls~~y~--~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 146 (582)
+|+++||+++|+ + +.+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+.|. +.+++.........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD----VLYDGERKKGYEIR 77 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEECCHHHHG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE----EEECCEECchHHhh
Confidence 589999999997 5 68999999999999999999999999999999999999887554 33332211000111
Q ss_pred HHhccccCC------CcchHHHHHHHHHc-CChhHHHHHHHHHHHhCCCC--hhhhhccCCCCChhHHHHHHHHHHHhcC
Q 007982 147 EILGAQEDG------GGEQLERVYERLEA-LDASTAEKRAAEILYGLGFN--KTMQAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 147 ~~~~~~~~~------~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
..+++.++. .....+++...... ......++++.++++.+|+. + ..++++.+|||||||||+|||||+.+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS-FKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH-HTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc-cccCChhhCCHHHHHHHHHHHHHHcC
Confidence 223322111 12333343221111 22233356788999999997 5 56889999999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 225 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEF 225 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHH
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999998765 6799999999999999999999999999974 5665554
No 67
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.2e-41 Score=338.78 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=158.4
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+. +|+.| .+.+++... .....
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G----~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG----TVEFKGKDLLALSPEDR 94 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE----EEEETTEEGGGSCHHHH
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe----EEEECCEECCcCCHHHH
Confidence 4799999999999999999999999999999999999999999999999984 34433 333332211 01111
Q ss_pred -HHHhc--cccCC---CcchHHHHHH---HHH---c---CChhHHHHHHHHHHHhCCCChhhhhccCC-CCChhHHHHHH
Q 007982 146 -AEILG--AQEDG---GGEQLERVYE---RLE---A---LDASTAEKRAAEILYGLGFNKTMQAKKTR-DFSGGWRMRIA 209 (582)
Q Consensus 146 -~~~~~--~~~~~---~~~~~~~~~~---~l~---~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~-~LSGGqrqRv~ 209 (582)
...++ +|... .....+.+.. .+. . ........++.++++.+|+.....++++. +|||||||||+
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 11222 22221 1122333221 111 1 12334456789999999996445678887 59999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChhHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+++++
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999999999999999999999999876 57999999999999886 99999999999974 5666543
No 68
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-41 Score=354.53 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=161.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++ +|+++||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~~~g~~i~~~~~~~r~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI----LLDGKDVTDLSPEKHDIA 75 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE----EETTEECTTSCHHHHTCE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE----EECCEECCCCchhhCcEE
Confidence 48899999999988 9999999999999999999999999999999999999885543 33222110 011112233
Q ss_pred c--ccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ |.. +..+..+++...+. ..+.. +++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLL 151 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLL 151 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2 222 12244455543332 22222 67899999999975 57899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57766543
No 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-41 Score=337.37 Aligned_cols=205 Identities=25% Similarity=0.331 Sum_probs=156.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|++ +|+|+||+|++ ++++|+||||||||||+|+|+|+.+|+.|. +.+++.... .......++
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~i~ 73 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE----VRLNGADITPLPPERRGIG 73 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE----EEETTEECTTSCTTTSCCB
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE----EEECCEECCcCchhhCcEE
Confidence 4789999999986 49999999999 999999999999999999999999887554 333322110 000011122
Q ss_pred c--ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 151 A--QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
+ |... .....+++............++++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2 2211 11233333211111111223567899999999974 5688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 226 PTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999998764 6799999999999999999999999999974 57776654
No 70
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-41 Score=356.85 Aligned_cols=208 Identities=24% Similarity=0.340 Sum_probs=163.1
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 150 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... .......++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI----YFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE----EETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE----EECCEECCCCChhhCcEE
Confidence 5999999999999999999999999999999999999999999999999999885543 32221110 000011222
Q ss_pred c--ccC---CCcchHHHHHHHH--HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 151 A--QED---GGGEQLERVYERL--EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 151 ~--~~~---~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
+ |.. +..+..+++...+ ...+..+.++++.++++.+||.+ ..++++.+|||||||||+|||||+.+|++|||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 211 1123333432211 12344556678999999999974 67899999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999988654 6899999999999999999999999999974 57776654
No 71
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.7e-42 Score=357.95 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=164.1
Q ss_pred ceEEeeeEEEECCee--eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH------HH
Q 007982 72 DIRIESLSVTFHGHD--LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK------LE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~--il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~------~~ 143 (582)
+|+++||+++|+++. +|+|+||+|++|++++|+||||||||||||+|+|+.+|+.|.+ .+++.... ..
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I----~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL----YFDDRLVASNGKLIVP 78 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE----EETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE----EECCEECcccccccCC
Confidence 699999999999887 9999999999999999999999999999999999999885543 22221100 00
Q ss_pred HHHHHhc--cccC---CCcchHHHHHHHHH--cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhc
Q 007982 144 KEAEILG--AQED---GGGEQLERVYERLE--ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFI 216 (582)
Q Consensus 144 ~~~~~~~--~~~~---~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 216 (582)
.....++ +|.. +..+..+++...+. ..+....++++.++++.+||.+ ..++++.+|||||||||+|||||+.
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHh
Confidence 0011222 2221 11234444433222 2344556678999999999974 6789999999999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+|++|||||||++||+..+..+.+.|+++ +.|+|+||||++++..+||+|++|++|+++. .|+++++.
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999988654 6899999999999999999999999999974 57776654
No 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.8e-41 Score=334.95 Aligned_cols=206 Identities=22% Similarity=0.264 Sum_probs=154.2
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC--CCCCCCceeeeeechHHHH---HHHHH-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI--EASDMSSLEAVISCDEERL---KLEKE- 145 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~--~~~~~~~~~~~i~~~~~~~---~~~~~- 145 (582)
+|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+ .+|+.| .+.+++... .....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G----~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG----EILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE----EEEETTEECTTSCHHHHH
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce----EEEECCEECCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999998 555533 333332211 01111
Q ss_pred HHHhc--cccCC---CcchHHHHHHHH---Hc--CChhHHHHHHHHHHHhCCCChhhhhccCCC-CChhHHHHHHHHHHH
Q 007982 146 AEILG--AQEDG---GGEQLERVYERL---EA--LDASTAEKRAAEILYGLGFNKTMQAKKTRD-FSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~--~~~~~---~~~~~~~~~~~l---~~--~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~-LSGGqrqRv~LAraL 214 (582)
...++ +|.+. .....+++.... .. ........++.++++.+|+.....++++.+ |||||||||+|||||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 11122 22221 123333332211 11 122344567889999999953456889999 999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhh-cCeEEEEeCCeEEEEcCChh
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGV-CTNIIHMQNKQLKFYTGNFD 282 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~ 282 (582)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+ ||++++|++|+++. .|+++
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999875 57999999999999988 59999999999974 46654
No 73
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.8e-41 Score=335.22 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=153.5
Q ss_pred cceEEeeeEEEE--CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTF--HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y--~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++| +++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ----VLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE----EEECCEEhhhCCHHHH
Confidence 379999999999 4678999999999999999999999999999999999999887553 33332111 11111
Q ss_pred HHHhccccCCC-cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGG-GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++.. ... ..+.+.+..........++.++++.+++.+.. .++++.+|||||||||+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 22343222111 111 13333332111111134566677777764321 2345689999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|+++++.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~l~ 231 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELL 231 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999876 689999999999986 499999999999974 57776654
No 74
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=9.8e-44 Score=392.43 Aligned_cols=390 Identities=14% Similarity=0.090 Sum_probs=237.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeE-EEeCCcEEEEECCCCCcHHHHHHH--HhcCCCCCCCceeeeeechHHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTA--IGEIEASDMSSLEAVISCDEERLKLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~--l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 148 (582)
.++.+++.+.+++.++|+++|| .|++|++++|+||||||||||+++ ++|+.+++.+.+. +...............
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~--v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF--VTFEETPQDIIKNARS 89 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE--EESSSCHHHHHHHHGG
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE--EEEeCCHHHHHHHHHH
Confidence 4555667766678899999999 999999999999999999999999 6788876544321 2111111111111112
Q ss_pred hccccCCCcchHHHHHHH--HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC
Q 007982 149 LGAQEDGGGEQLERVYER--LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP 226 (582)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP 226 (582)
+++. +.+.... +..+.... .....++++.+++.. ..++.+..||||| |++|+||||
T Consensus 90 ~g~~-------~q~~~~~~~l~~~~~~~-~~~~~~~l~~~~l~~-~~~~~~~~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 90 FGWD-------LAKLVDEGKLFILDASP-DPEGQEVVGGFDLSA-LIERINYAIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp GTCC-------HHHHHHTTSEEEEECCC-CSSCCSCCSSHHHHH-HHHHHHHHHHHHT-------------CSEEEEECS
T ss_pred cCCC-------hHHhhccCcEEEEecCc-ccchhhhhcccCHHH-HHHHHHHHHHHcC-------------CCEEEECCH
Confidence 2111 1111000 00000000 000112233344432 3455666777764 779999999
Q ss_pred CCC-----CCHHHHHHHHHHHhhc---CcEEEEEecCHHHH---------HhhcCeEEEEeCCeEEEEcCChhHHHHhHH
Q 007982 227 TNH-----LDLEACVWLEETLKKF---DRILVVISHSQDFL---------NGVCTNIIHMQNKQLKFYTGNFDQYVQTRS 289 (582)
Q Consensus 227 t~~-----LD~~~~~~l~~~l~~~---~~tviivsHd~~~~---------~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 289 (582)
|+. ||+..+..|.++++.+ +.|||+|||+++++ ..+||+|++|++|++ .|....+...
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~-- 222 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI-- 222 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--
Confidence 984 6899998888887654 78999999999984 567999999998432 1211100000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHcCCCCccc-ccCceeEEEeccCCCCCCCeE
Q 007982 290 ELEENQMKQYKWEQEQIASMKEYIARF-GHGSAKLARQAQSKEKTLAKMERGGLTEKV-VKDKVLVFRFVDVGKLPPPVL 367 (582)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 367 (582)
.++ +... ... ...+ ....-+. .++.......+.+
T Consensus 223 ------------------------~k~r~~~~------------------~~~-~~~~~i~~~gi~-v~p~~~~~~~~~~ 258 (525)
T 1tf7_A 223 ------------------------LKLRGTSH------------------MKG-EYPFTITDHGIN-IFPLGAMRLTQRS 258 (525)
T ss_dssp ------------------------EEETTSCC------------------CCS-EEEEEEETTEEE-ECCTTTCCSCCCC
T ss_pred ------------------------EECCCCCC------------------CCc-eEEEEEcCCCEE-EEecccccccccc
Confidence 000 0000 000 0000 0000000 0110011123456
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE-EEEcCceeEEEechhhhhhcCCc
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM-VRRHNHLRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~-i~~~~~~~~~~~~q~~~~~~~~~ 446 (582)
+++++++.|++-..+| +..|.+|++++|+||||||||||++.++|+..|. |. + +.+.+|.....
T Consensus 259 ~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-------i~~~~ee~~~~---- 323 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-------ILFAYEESRAQ---- 323 (525)
T ss_dssp CCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE-------EEEESSSCHHH----
T ss_pred ccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE-------EEEEEeCCHHH----
Confidence 7888887664201232 4489999999999999999999999999998875 53 2 22333332211
Q ss_pred ccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HH
Q 007982 447 MSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE-----TI 521 (582)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~-----~~ 521 (582)
...... .+. .+. .+ +..+|+...... ++.+|||||+||+++|+++..+|++||+| ||++||.. .+
T Consensus 324 --l~~~~~-~~g-~~~---~~-~~~~g~~~~~~~-~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 324 --LLRNAY-SWG-MDF---EE-MERQNLLKIVCA-YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp --HHHHHH-TTS-CCH---HH-HHHTTSEEECCC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred --HHHHHH-HcC-CCH---HH-HHhCCCEEEEEe-ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 111111 111 111 12 224555443333 44799999999999999999999999999 99999998 88
Q ss_pred HHHHHHHH---hcCceEEEEecCH----------HHHHhhcCEEEEEeCCe
Q 007982 522 DSLAEALN---EWDGGLVLVSHDF----------RLINQVAHEIWVCENQA 559 (582)
Q Consensus 522 ~~l~~~l~---~~~~tvi~vsHd~----------~~~~~~~d~i~~l~~G~ 559 (582)
..+.++++ +.+.|||+||||. +++..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 77766654 4578999999999 88889999999998775
No 75
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-41 Score=339.24 Aligned_cols=204 Identities=22% Similarity=0.268 Sum_probs=157.1
Q ss_pred ceEEeeeEEEECC----eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHG----HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~----~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 147 (582)
+|+++|++++|++ +.+|+++||+|+ |++++|+||||||||||+|+|+|+. |+.|. +.+++..........
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~----I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN----IFINGMEVRKIRNYI 74 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE----EEETTEEGGGCSCCT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE----EEECCEECcchHHhh
Confidence 4899999999987 789999999999 9999999999999999999999999 87443 333321110000011
Q ss_pred Hhc---cccCC-CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceee
Q 007982 148 ILG---AQEDG-GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLL 223 (582)
Q Consensus 148 ~~~---~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlL 223 (582)
.++ +|... .....+++....... .....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||
T Consensus 75 ~i~~~v~Q~~~l~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 75 RYSTNLPEAYEIGVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp TEEECCGGGSCTTSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred heEEEeCCCCccCCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 122 12211 223333432221111 112456889999999972356889999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcC-eEEEEeCCeEEEEcCChhHH
Q 007982 224 DEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCT-NIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 224 DEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~ 284 (582)
||||++||+.++.++.+.|+++..|||+||||++++..+|| ++++|++|+++. .|+++++
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l 213 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSEL 213 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999886699999999999999999 999999999974 4665443
No 76
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-40 Score=336.12 Aligned_cols=208 Identities=22% Similarity=0.311 Sum_probs=155.5
Q ss_pred cceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHH
Q 007982 71 RDIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEK 144 (582)
Q Consensus 71 ~~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~ 144 (582)
.+|+++||+++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... ....
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~----I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK----VLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE----EEECCEEcccCCHHH
Confidence 37999999999986 78999999999999999999999999999999999999887554 33322111 1111
Q ss_pred HHHHhcc--ccCCC--cchHHHHHHHHHcCCh-hHH-----HHHHHHHHHhC--CCChhhhhccCCCCChhHHHHHHHHH
Q 007982 145 EAEILGA--QEDGG--GEQLERVYERLEALDA-STA-----EKRAAEILYGL--GFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 145 ~~~~~~~--~~~~~--~~~~~~~~~~l~~~~~-~~~-----~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
....+++ |.... ....+++......... ... ...+.++++.+ |+.. ..++++.+|||||||||+|||
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHH
T ss_pred HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHH
Confidence 1223332 22211 1233333211111111 111 12345677777 6753 467889999999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|++|+++. .|+++++.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999875 5699999999999875 99999999999974 57776654
No 77
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=350.76 Aligned_cols=200 Identities=23% Similarity=0.339 Sum_probs=172.1
Q ss_pred CeEEEEEEEEEec-CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYT-PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++||+|+|+ ++..+|+|+||+|.+||+++|+||||||||||||+|+|+++ ++|+|.+.+. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 5699999999995 34679999999999999999999999999999999999998 8999998763 358
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCC-----------CChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKN-----------LSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----------LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.. +.....+++.++++.++|.+...+.| .+ |||||||||+|||||+
T Consensus 97 g~v~Q~~~--l-f~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~~~~~~p-~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 97 GVIPQKVF--I-FSGTFRKNLDP-NAAHSDQEIWKVADEVGLRSVIEQFP-GKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEESCCCC--C-CSEEHHHHHCT-TCCSCHHHHHHHHHHTTCHHHHTTST-TGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcc--c-CccCHHHHhhh-ccccCHHHHHHHHHHhCCHHHHhhcc-cccccccccccccCCHHHHHHHHHHHHHh
Confidence 99999864 2 34688888752 22334567889999999987665444 56 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+ ..||||++|++|+|. ..|++.++..
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEE-EESSHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999876 56999999998766 569999999999997 4799988765
No 78
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3e-40 Score=338.16 Aligned_cols=206 Identities=20% Similarity=0.332 Sum_probs=152.6
Q ss_pred cceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 71 ~~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
..|+++||+|+|+ ++.+|+|+||+|++|++++||||||||||||+++|+|+.+|+.|. +.+++..+ ......
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~----I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC----IRIDGQDISQVTQASLR 127 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEE----EEETTEETTSBCHHHHH
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcE----EEECCEEcccCCHHHHh
Confidence 3699999999995 578999999999999999999999999999999999999887543 33333211 112222
Q ss_pred HHhcc--ccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCCh----------hhhhccCCCCChhHHHHHHHHH
Q 007982 147 EILGA--QEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNK----------TMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 147 ~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~----------~~~~~~~~~LSGGqrqRv~LAr 212 (582)
..+++ |.+. ..+..+++........ ...+.++++.+++.+ ...++.+.+|||||||||+|||
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiAR 203 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTTCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhcccCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHH
Confidence 33432 2221 1223333321111111 123334444444321 2334566899999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
||+.+|+||||||||++||+.+...|.+.|+++ ++|+|+||||++.+.. ||+|++|++|+|+ ..|+++++..
T Consensus 204 AL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~ 277 (306)
T 3nh6_A 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS 277 (306)
T ss_dssp HHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999999999875 6799999999999987 9999999999997 4688877654
No 79
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.5e-40 Score=326.61 Aligned_cols=199 Identities=21% Similarity=0.261 Sum_probs=154.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEAEI 148 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~ 148 (582)
+|+++||+++ .+|+|+||+|++|++++|+||||||||||+|+|+|+.+|+ |.+. +++... ........
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~----~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQ----FAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEE----ETTEEGGGSCHHHHHHH
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEE----ECCEECCcCCHHHHhce
Confidence 6999999987 6999999999999999999999999999999999999887 6542 222111 11112223
Q ss_pred hcc--ccCCC---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC----
Q 007982 149 LGA--QEDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT---- 219 (582)
Q Consensus 149 ~~~--~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~---- 219 (582)
+++ |.... ....+++... ...... +.++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~--~~~~~~-~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~ 150 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLH--QHDKTR-TELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 150 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTT--CSSTTC-HHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred EEEECCCCccCCCCcHHHHHHHh--hccCCc-HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCC
Confidence 332 22211 1233333211 111111 567889999999964 5688999999999999999999999999
Q ss_pred ---ceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 220 ---ILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 220 ---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+++++
T Consensus 151 ~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 220 (249)
T 2qi9_C 151 AGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEV 220 (249)
T ss_dssp TCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHH
T ss_pred CCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999998765 6799999999999999999999999999974 4665544
No 80
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-39 Score=331.57 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=150.6
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
.++|+++|+++.+ +.+|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|... +
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l 110 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--I 110 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--C
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--c
Confidence 3569999999864 4689999999999999999999999999999999999999999999877 5899999853 2
Q ss_pred CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 007982 444 DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT 513 (582)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt 513 (582)
. ..|+.+++. .... ....+.++++.+++..... ..++.+|||||||||+|||||+.+|++|||||||
T Consensus 111 ~-~~tv~enl~-~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 111 M-PGTIKENII-GVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp C-SSBHHHHHH-TTCC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred C-cccHHHHhh-Cccc-chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 2 348888886 3221 2233445556666543221 1234799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-Hhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 514 NHLDIETIDSLAEAL-NEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++|+++ ..|+++++..
T Consensus 188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 247 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN 247 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence 999999999999964 443 579999999999985 69999999999996 5788888754
No 81
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-41 Score=333.01 Aligned_cols=206 Identities=22% Similarity=0.317 Sum_probs=152.0
Q ss_pred ceEEeeeEEEE-CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH---HHHHHH
Q 007982 72 DIRIESLSVTF-HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK---LEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y-~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~ 147 (582)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|.+. +++.... ......
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~g~~~~~~~~~~~~~ 76 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPIDNISLENWRS 76 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE----ETTEESTTTSCSCCTT
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE----ECCEEhhhCCHHHHHh
Confidence 48899999999 567899999999999999999999999999999999999988766542 2221110 000011
Q ss_pred Hhcc--ccCCCcchHHHHHHHHHcC-ChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHH
Q 007982 148 ILGA--QEDGGGEQLERVYERLEAL-DASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL 214 (582)
.+++ |..... . ..+.+.+... .......++.++++.+++.+.. .++++.+|||||||||+|||||
T Consensus 77 ~i~~v~q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 77 QIGFVSQDSAIM-A-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TCCEECCSSCCC-C-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred hEEEEcCCCccc-c-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 1222 221111 1 1233333211 1111134567778888875422 1245689999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++ ..|+++++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELV 225 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999999999988765 689999999999886 59999999999996 467776654
No 82
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.1e-39 Score=358.90 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=173.4
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999743 67999999999999999999999999999999999999999999988662 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.... +....+++.++++.+++.+..... +..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVH--L-FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCc--c-ccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 99999863 2 3458888886543 334566788888888876543322 34799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLLA 567 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999876 579999999999986 699999999999974 899888754
No 83
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-39 Score=327.88 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=150.8
Q ss_pred ceEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 72 DIRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
+|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.++ .| .+.+++... .....
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G----~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG----DIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE----EEEETTEEGGGBCHHHH
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce----EEEECCEEhhhcCHHHH
Confidence 6999999999976 4699999999999999999999999999999999999875 33 333332211 11111
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARA 213 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAra 213 (582)
...+++ |.+... . ..+.+.+..........++.++++.+++.+.. .++++.+|||||||||+||||
T Consensus 92 ~~~i~~v~Q~~~l~-~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 92 RSIIGIVPQDTILF-N-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp HTTEEEECSSCCCC-S-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred hccEEEEcCCCccc-c-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 222332 222111 1 12333332111011134566777777764321 235688999999999999999
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++. .||+|++|++|+++. .|+++++.
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999776 579999999999986 599999999999974 57776654
No 84
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-40 Score=322.29 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=149.2
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..|+++||+++|++ .+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++.... .....++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~----I~~~g~~~~--~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE----IIYNGVPIT--KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEE----EEETTEEGG--GGGGGEE
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE----EEECCEEhh--hhcCcEE
Confidence 37999999999998 9999999999999999999999999999999999999887543 333332211 0112232
Q ss_pred c--ccCC---CcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 151 A--QEDG---GGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 151 ~--~~~~---~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
+ |... .....+++........ ... +.++.++++.+|+.. . ++++.+|||||||||+|||||+.+|++||||
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2 2211 1233444432221111 122 567889999999975 4 8899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 225 EPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 225 EPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||+++.+ .|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999998765 579999999999999999998855 4444
No 85
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.6e-39 Score=359.23 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=173.7
Q ss_pred CeEEEEEEEEEecCC-ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTPD-NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999743 67999999999999999999999999999999999999999999998762 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHHc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral~ 501 (582)
+|++|++. + +..|+.+++.... +....+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVH--L-FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCC--C-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCc--C-CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999863 2 3458999886543 33456678888988887644332 235799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|++|||||||++||+.+...+.+.++++ +.|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999998875 679999999999985 699999999999974 799888754
No 86
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.7e-39 Score=359.62 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=172.4
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
.-|+++|++|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45999999999975 357999999999999999999999999999999999999999999998763 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccC----------CCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVM----------PMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. + +..|+.+++....+....+++.++++..++.+..... +..+|||||||||+|||||+.
T Consensus 418 ~~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--L-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--C-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--c-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999853 2 3459999987654444556677777777764433222 235899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+.+...+.+.++++ ++|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999998775 579999999999985 599999999999974 899988765
No 87
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-39 Score=362.05 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=173.3
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
.-|+++|++|+|+++.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999976667999999999999999999999999999999999999999999998763 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHccC
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~~ 503 (582)
|++|++. + +..|+.+++....+....+++.++++.+++.+.....| ..+|||||||||+|||||+.+
T Consensus 433 ~v~Q~~~--l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTI--L-FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCC--C-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCc--c-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999863 2 35689998875433334456777888777755443333 258999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
|++|||||||++||+.+...+.+.+.++ +.|+|+||||++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999998875 6799999999999865 99999999999974 899988754
No 88
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=321.30 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=143.6
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHh
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (582)
+|+++||+++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~----I~~~g~----------i 68 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH----VAIKGS----------V 68 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE----EEECSC----------E
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce----EEECCE----------E
Confidence 699999999997 578999999999999999999999999999999999999887543 333220 1
Q ss_pred c--cccCC--CcchHHHHHHHHHcCChhHHHHHHHH---HHHhCCCCh----hhhhccCCCCChhHHHHHHHHHHHhcCC
Q 007982 150 G--AQEDG--GGEQLERVYERLEALDASTAEKRAAE---ILYGLGFNK----TMQAKKTRDFSGGWRMRIALARALFINP 218 (582)
Q Consensus 150 ~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~---~l~~lgl~~----~~~~~~~~~LSGGqrqRv~LAraL~~~P 218 (582)
+ +|.+. .....+++.... ...... ..++.+ +++.+++.+ ...++++.+|||||||||+|||||+.+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC-QLEEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS-CCCTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc-ccCHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 1 11111 122223321110 111111 111111 122222211 1236789999999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHh---hc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 219 TILLLDEPTNHLDLEACVWLEETLK---KF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 219 ~lLlLDEPt~~LD~~~~~~l~~~l~---~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
++|||||||++||+.++..+.+.|. ++ +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 216 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL 216 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence 9999999999999999999999984 32 679999999999975 79999999999997 457776654
No 89
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-38 Score=355.98 Aligned_cols=203 Identities=21% Similarity=0.279 Sum_probs=170.1
Q ss_pred CeEEEEEEEEEecC-CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 365 PVLQFVEVTFGYTP-DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 365 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
..|+++|++|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999964 357999999999999999999999999999999999999999999998763 258
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCcc----------ccCCCCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKA----------QVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. + +..|+.+++....+....+++.++++..++.+.. ...+..+|||||||||+|||||+.
T Consensus 420 ~~v~Q~~~--l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETV--L-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCC--C-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCc--C-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 99999863 2 3568999886543333445555566555443211 123457999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999875 579999999999985 899999999999975 899988765
No 90
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-38 Score=314.60 Aligned_cols=193 Identities=20% Similarity=0.340 Sum_probs=142.6
Q ss_pred ceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHh
Q 007982 72 DIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEIL 149 (582)
Q Consensus 72 ~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 149 (582)
+|+++||+++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+.+|+.|.+ .+++. +
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i----~~~g~----------i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----KHSGR----------I 71 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE----EECSC----------E
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE----EECCE----------E
Confidence 799999999995 5789999999999999999999999999999999999998875543 22220 1
Q ss_pred c--cccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHHh
Q 007982 150 G--AQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 150 ~--~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
+ +|... .....+++.. ..... ..+..++++.+++.+. ..++++.+|||||||||+|||||+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~---~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIF---GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHT---TSCCC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCHHHHhhc---cCCcC--hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 1 11111 1122222211 00100 1122333444444221 123356899999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHH-Hhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEET-LKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
.+|++|||||||++||+.++..+.+. +.++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999997 4443 679999999999986 599999999999974 57776654
No 91
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-38 Score=357.14 Aligned_cols=201 Identities=26% Similarity=0.358 Sum_probs=168.7
Q ss_pred EEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeEE
Q 007982 367 LQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRIA 433 (582)
Q Consensus 367 l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~~ 433 (582)
|+++|++|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..++. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999742 47999999999999999999999999999999999999999999998762 2589
Q ss_pred EechhhhhhcCCcccHHHHHHhcCCC---ChHHHHHHHHHhcCCCCcccc----------CCCCCCChhHHHHHHHHHHH
Q 007982 434 QFHQHLAEKLDMDMSALQYMIKEYPG---NEEEKMRAAIGRFGLTGKAQV----------MPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 434 ~~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~----------~~~~~LSgGqkqrv~lAral 500 (582)
|++|++. + +..|+.+++....+. ...+++.++++.+++.+.... .+..+|||||||||+|||||
T Consensus 422 ~v~Q~~~--l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 422 TVSQEPI--L-FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp EECSSCC--C-CSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred EEccCCc--c-cCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 9999863 2 345899988654332 356778889998887543221 12379999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 501 YRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 501 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+.+|++|||||||++||+.+...+.+.|+++ +.|+|+||||++.+. .||+|++|++|++++ .|+++++.+
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 570 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE-YGKHEELLS 570 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECSCC---
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999875 679999999999985 599999999999975 677666543
No 92
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-39 Score=341.28 Aligned_cols=204 Identities=22% Similarity=0.342 Sum_probs=157.3
Q ss_pred cceEEeeeEEEE--CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTF--HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y--~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
..|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+ +. |.+.+++... .....
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~----G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE----GEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EE----EEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CC----eEEEECCEECCcCChHHH
Confidence 369999999999 66789999999999999999999999999999999999987 43 3343333211 11112
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCC-----------CChhHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRD-----------FSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~LAr 212 (582)
...+++ |...... ..+.+.+... .....+++.++++.+++.+ ..++++.+ |||||||||+|||
T Consensus 93 rr~ig~v~Q~~~lf~--~tv~enl~~~-~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS--GTFRKNLDPN-AAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHTEEEESCCCCCCS--EEHHHHHCTT-CCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred hCCEEEEcCCcccCc--cCHHHHhhhc-cccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 233332 2221111 1333333211 1223456888999999964 56888888 9999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|+||||||||++||+..+..+.+.|+++ +.|+|+||||++.+ ..||||++|++|+|+. .|+++++.
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEE-ESSHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999875 57999999998766 4699999999999974 57776654
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.7e-36 Score=335.79 Aligned_cols=210 Identities=19% Similarity=0.312 Sum_probs=156.6
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|.+ .+++... .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i----~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI----CLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE----EECCEEhhhCCHHHH
Confidence 46999999999974 689999999999999999999999999999999999999886643 2222211 11112
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++........+.+++.... ....++++.++++.+++.+. ..++++.+|||||||||+|||||
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred hcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 22233222211111123444443211 11224556777777776432 12334589999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|++++...
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999876 679999999999986 69999999999997 4688777653
No 94
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-36 Score=308.85 Aligned_cols=190 Identities=21% Similarity=0.347 Sum_probs=130.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc-
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG- 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 150 (582)
.|+++||++. ++.+|+++||+|++|++++|+||||||||||+|+|+|+.+|+.|. +.+++. ++
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~----I~~~g~----------i~~ 103 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK----IKHSGR----------ISF 103 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE----EECCSC----------EEE
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE----EEECCE----------EEE
Confidence 6999999986 368999999999999999999999999999999999999887443 333220 11
Q ss_pred -cccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHHHHhcC
Q 007982 151 -AQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALARALFIN 217 (582)
Q Consensus 151 -~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAraL~~~ 217 (582)
+|... .....+++. ..... ..++.++++.+++...+ .++++.+|||||||||+|||||+.+
T Consensus 104 v~Q~~~l~~~tv~enl~----~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 104 CSQNSWIMPGTIKENII----GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp ECSSCCCCSSBHHHHHH----TTCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EeCCCccCcccHHHHhh----Ccccc--hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 11111 112333332 11111 11233444445543211 2234589999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 218 PTILLLDEPTNHLDLEACVWLEETL-KKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 218 P~lLlLDEPt~~LD~~~~~~l~~~l-~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|++|||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999999999999999999974 343 679999999999986 699999999999974 57776654
No 95
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-36 Score=335.60 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=152.3
Q ss_pred cceEEeeeEEEEC--CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFH--GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER---LKLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~--~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~~ 145 (582)
..|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++.. ......
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~----i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR----VEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE----EEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE----EEECCEEcccCCHHHH
Confidence 4699999999995 467999999999999999999999999999999999999987553 3333221 112222
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhC-----------CCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGL-----------GFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
...+++.++........+.+++.........+.+.+.++.. |++ ...++++.+|||||||||+|||||
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHH
Confidence 33344322211100012333332111101112223333333 332 234677889999999999999999
Q ss_pred hcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 215 FINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|+++++..
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~ 566 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLE 566 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999999875 679999999999986 89999999999997 4688887764
No 96
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.9e-36 Score=336.59 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=155.4
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
.+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~----i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH----ILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE----EEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe----EEECCEEccccCHHHH
Confidence 47999999999974 68999999999999999999999999999999999999887543 33333211 11122
Q ss_pred HHHhcc--ccCCCcchHHHHHHHHHcCC-hhHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHHHHH
Q 007982 146 AEILGA--QEDGGGEQLERVYERLEALD-ASTAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 146 ~~~~~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~LAr 212 (582)
...+++ |.+... . ..+.+.+.... ....++++.++++.+++.+.. .++++.+|||||||||+|||
T Consensus 416 ~~~i~~v~Q~~~l~-~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 416 RNQVALVSQNVHLF-N-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp HHTEEEECSSCCCC-S-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HhhCeEEccCCcCC-C-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 233332 222111 1 12333332111 111235577788888775321 22346899999999999999
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++ ..|++++..
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 566 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELL 566 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHH
Confidence 999999999999999999999999999998775 689999999999886 69999999999997 457877664
No 97
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.1e-36 Score=335.49 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=153.3
Q ss_pred c-eEEeeeEEEECC---eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHH
Q 007982 72 D-IRIESLSVTFHG---HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEK 144 (582)
Q Consensus 72 ~-i~v~nls~~y~~---~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~ 144 (582)
. |+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... ....
T Consensus 340 ~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~----i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 340 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT----ISLDGHDIRQLNPVW 415 (595)
T ss_dssp CCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE----EEETTEETTTBCHHH
T ss_pred CeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE----EEECCEEhhhCCHHH
Confidence 5 999999999975 47999999999999999999999999999999999999887543 33333211 1112
Q ss_pred HHHHhcc--ccCCCcchHHHHHHHHHcC-Ch--hHHHHHHHHHHHhCCCChhh----------hhccCCCCChhHHHHHH
Q 007982 145 EAEILGA--QEDGGGEQLERVYERLEAL-DA--STAEKRAAEILYGLGFNKTM----------QAKKTRDFSGGWRMRIA 209 (582)
Q Consensus 145 ~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~~l~~lgl~~~~----------~~~~~~~LSGGqrqRv~ 209 (582)
....+++ |.+... . ..+.+.+... +. ...++++.++++.+++.+.. .++++.+|||||||||+
T Consensus 416 ~~~~i~~v~Q~~~l~-~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~ 493 (595)
T 2yl4_A 416 LRSKIGTVSQEPILF-S-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 493 (595)
T ss_dssp HHHSEEEECSSCCCC-S-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHH
T ss_pred HHhceEEEccCCccc-C-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 2233332 222111 1 1233333211 11 12245677888888774321 12334899999999999
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++|+++. .|++++..
T Consensus 494 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 569 (595)
T 2yl4_A 494 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITE-YGKHEELL 569 (595)
T ss_dssp HHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECSCC--
T ss_pred HHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999999775 689999999999986 599999999999974 57777664
No 98
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-36 Score=337.17 Aligned_cols=209 Identities=20% Similarity=0.309 Sum_probs=153.5
Q ss_pred cceEEeeeEEEECC-eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHHH
Q 007982 71 RDIRIESLSVTFHG-HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKEA 146 (582)
Q Consensus 71 ~~i~v~nls~~y~~-~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 146 (582)
..|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|+.|. +.+++... ......
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~----i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ----ILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE----EEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE----EEECCEEhhhCCHHHHH
Confidence 36999999999974 67999999999999999999999999999999999999988553 33332211 122223
Q ss_pred HHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhc-----------cCCCCChhHHHHHHHHHHHh
Q 007982 147 EILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAK-----------KTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~~LSGGqrqRv~LAraL~ 215 (582)
..+++.++........+.+++........++.+.++++.+++.+ ..++ ...+|||||||||+|||||+
T Consensus 429 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 429 SSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH-FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHH-HHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHH-HHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 33432222111001123333321111111233555666666532 2233 33799999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ 578 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998775 6899999999999875 9999999999997 5788887764
No 99
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.2e-36 Score=334.94 Aligned_cols=210 Identities=22% Similarity=0.349 Sum_probs=152.7
Q ss_pred cceEEeeeEEEECC--eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH---HHHHH
Q 007982 71 RDIRIESLSVTFHG--HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL---KLEKE 145 (582)
Q Consensus 71 ~~i~v~nls~~y~~--~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~~ 145 (582)
..|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|+.|. +.+++... .....
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~----i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ----ILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE----EEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE----EEECCEEhhhCCHHHH
Confidence 36999999999964 57999999999999999999999999999999999999987543 33333211 12222
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChh----------hhhccCCCCChhHHHHHHHHHHHh
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKT----------MQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~----------~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
...+++.++........+.+++........++++.+.++..++.+. ..+..+.+|||||||||+|||||+
T Consensus 414 r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence 3334322221110011233333211111112345555555554321 223455799999999999999999
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 286 (582)
.+|++|||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|++|+++ ..|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999998765 5799999999999864 9999999999997 4688877654
No 100
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3e-35 Score=338.45 Aligned_cols=200 Identities=27% Similarity=0.464 Sum_probs=164.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG-DLVPLDGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
.|...|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+| .+ .|.- .....+++|++|.+. .+.
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~-~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFP-TQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCC-CTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCc-cccceeEEEEccccc-ccc
Confidence 466679999996 4689999999999999999999999999999999984 32 1210 011224567776531 233
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
...++.+++....... .++++++|+.+|+.....++++.+|||||||||+|||+|+.+|+||||||||+|||+.++..|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 4567888775322122 567899999999964344567899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+.|++.+.|||+||||++++..+||+|++|++|+++.+.|++.++..
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999998778999999999999999999999999999777899999875
No 101
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-36 Score=358.89 Aligned_cols=202 Identities=28% Similarity=0.368 Sum_probs=176.2
Q ss_pred eEEEEEEEEEecC--CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------eeE
Q 007982 366 VLQFVEVTFGYTP--DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LRI 432 (582)
Q Consensus 366 ~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~~ 432 (582)
-|+++||+|+|++ +.++|+|+||+|++|+.+|||||+|||||||+++|.|+++|++|+|..++. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 5999999999974 457999999999999999999999999999999999999999999998763 259
Q ss_pred EEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCC----------CCCCChhHHHHHHHHHHHcc
Q 007982 433 AQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMP----------MKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 433 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------~~~LSgGqkqrv~lAral~~ 502 (582)
+|++|++. -++.|+.+++....+..+.+++.++++..++.++....| ...|||||||||+||||+++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999863 467899999986655556778888888887654433222 35899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
+|+||||||||++||+++...+.+.|.++ ++|+|+|||++..+ +.||+|+||++|+|++ .|+.+++.+
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive-~Gth~eL~~ 641 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQVVE-VGDHRALMA 641 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEEEE-EECHHHHHT
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCeeec-cCCHHHHHH
Confidence 99999999999999999999999999876 68999999999988 5799999999999985 899888753
No 102
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-35 Score=357.63 Aligned_cols=203 Identities=26% Similarity=0.330 Sum_probs=169.4
Q ss_pred CeEEEEEEEEEecCC--ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------ee
Q 007982 365 PVLQFVEVTFGYTPD--NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------LR 431 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~~ 431 (582)
.-|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|..++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999742 46999999999999999999999999999999999999999999998763 24
Q ss_pred EEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccc----------cCCCCCCChhHHHHHHHHHHHc
Q 007982 432 IAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQ----------VMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~LSgGqkqrv~lAral~ 501 (582)
+++++|++. + +..|+.+++....+....+++.++++..++.+... .....+|||||||||+|||||+
T Consensus 466 i~~v~Q~~~--l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPV--L-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCC--C-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--c-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 899999863 2 34589998876544344555666666555432211 1234689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 572 (582)
.+|+||||||||++||+++...+.+.++.. ++|+|+|||+++.+.. ||+|++|++|+|+ ..|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999999999999999999999999988764 6899999999999965 9999999999997 4899988754
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-35 Score=331.07 Aligned_cols=189 Identities=22% Similarity=0.321 Sum_probs=152.4
Q ss_pred CeEEE--------EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE---------Ec
Q 007982 365 PVLQF--------VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RH 427 (582)
Q Consensus 365 ~~l~~--------~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~---------~~ 427 (582)
.+|++ +|++++|++...+++++| +|.+||++||+||||||||||+|+|+|+++|++|++. ..
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred ceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC
Confidence 46888 899999965335899999 9999999999999999999999999999999999851 11
Q ss_pred C-------------ceeEEEechhhhhhcC-CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 428 N-------------HLRIAQFHQHLAEKLD-MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 428 ~-------------~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
+ ...+++.+|.+..... ...++.+++... ...+++.++|+.+||.... ++++.+||||||||
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~-~~~~~~LSGGekQR 236 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELENVL-DRELHQLSGGELQR 236 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTTGG-GSBGGGCCHHHHHH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCchh-CCChhhCCHHHHHH
Confidence 1 1234555665322111 112566655321 1123578899999998755 46779999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCC
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G 558 (582)
|+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||+|++|+++
T Consensus 237 vaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998876 789999999999999999999999865
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.7e-36 Score=329.04 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=147.3
Q ss_pred EEE-EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE---------EcC--------
Q 007982 367 LQF-VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR---------RHN-------- 428 (582)
Q Consensus 367 l~~-~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~---------~~~-------- 428 (582)
.++ +|++++|++...+++++| +|.+||++||+||||||||||+|+|+|+++|++|++. ..+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 599999965335899999 9999999999999999999999999999999999851 111
Q ss_pred -----ceeEEEechhhhhhcC-CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 429 -----HLRIAQFHQHLAEKLD-MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 429 -----~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
...+++.+|.+..... ...++.+++.... ..+++.++|+.+|+.... ++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~~-~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENVL-EREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTTT-TSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChhh-hCChhhCCHHHHHHHHHHHHHhc
Confidence 1234566665321110 1124555443211 123578899999998654 56779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCC
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G 558 (582)
+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999988765 789999999999999999999999864
No 105
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-34 Score=316.10 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=145.0
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
..++++|+++.|++. .|.++||+|++||++||+||||||||||+++|+|+.+|+.|.+. +....+. ..
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~----~~~~~i~-------~~ 335 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT----PEKQILS-------YK 335 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEE----SSCCCEE-------EE
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE----ECCeeeE-------ee
Confidence 468999999999874 57888999999999999999999999999999999998866542 1110000 00
Q ss_pred ccc---CCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC
Q 007982 151 AQE---DGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT 227 (582)
Q Consensus 151 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt 227 (582)
.+. .......+++.. ............+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||
T Consensus 336 ~q~~~~~~~~tv~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 336 PQRIFPNYDGTVQQYLEN-ASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp CSSCCCCCSSBHHHHHHH-HCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred chhcccccCCCHHHHHHH-hhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 010 011222222221 111000012345788899999964 678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 228 NHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999988764 67999999999999999999999986
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=311.76 Aligned_cols=186 Identities=19% Similarity=0.256 Sum_probs=141.6
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------e---------
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------L--------- 430 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------~--------- 430 (582)
|++++|+.....+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|..... .
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57888975555677777 58999999999999999999999999999999999832110 0
Q ss_pred ----eEEEechhhhh---hc-CCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc
Q 007982 431 ----RIAQFHQHLAE---KL-DMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR 502 (582)
Q Consensus 431 ----~~~~~~q~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~ 502 (582)
...+.+|.... .. ....++.+.+... .....+++.++++.+|+.... ++++.+|||||||||+|||||+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLENVL-KRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTGGG-GSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcchh-CCChHHCCHHHHHHHHHHHHHHh
Confidence 00011111000 00 0001222222111 122346788999999998765 46779999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|.+|.
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999998876 5799999999999999999999998765
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=1.4e-32 Score=311.75 Aligned_cols=191 Identities=19% Similarity=0.171 Sum_probs=130.6
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHH---------------------HHHhCCCCCCCcEEEE-------cCc--
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLL---------------------KLMTGDLVPLDGMVRR-------HNH-- 429 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl---------------------~ll~Gl~~p~~G~i~~-------~~~-- 429 (582)
..+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|.. .+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8999999998665532 221
Q ss_pred -----eeEEEechhhhh-----------------hcCCcccHHHHHHhc--C--CCCh----H------HHHHHHHHhcC
Q 007982 430 -----LRIAQFHQHLAE-----------------KLDMDMSALQYMIKE--Y--PGNE----E------EKMRAAIGRFG 473 (582)
Q Consensus 430 -----~~~~~~~q~~~~-----------------~~~~~~~~~~~~~~~--~--~~~~----~------~~~~~~l~~~g 473 (582)
..+++++|.... ......++.+++... . .... . .....+++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 112222221110 001122344433211 0 0000 0 11123588999
Q ss_pred CCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh
Q 007982 474 LTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQV 548 (582)
Q Consensus 474 l~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~ 548 (582)
|.+...++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97654456779999999999999999999998 99999999999999999999988765 679999999999875 5
Q ss_pred cCEEEEE------eCCeEEEEcCCHHHHHH
Q 007982 549 AHEIWVC------ENQAVTRWEGDIMDFKL 572 (582)
Q Consensus 549 ~d~i~~l------~~G~i~~~~g~~~~~~~ 572 (582)
||+|++| ++|+++ ++|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CCEEEEecccccccCCEEE-EecCHHHHhc
Confidence 9999999 899996 6899988754
No 108
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-32 Score=296.47 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=155.4
Q ss_pred CCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-E-EEEcCc--eeEEEechhh
Q 007982 364 PPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-M-VRRHNH--LRIAQFHQHL 439 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~-i~~~~~--~~~~~~~q~~ 439 (582)
.++++++|+++.|+ ++||++.+|++++|+||||||||||+|+|+|++.|++| + |...+. ..+++++|.+
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 46788999998884 69999999999999999999999999999999999999 8 887652 3467777765
Q ss_pred hhh-cCCcccHHHHHHh-cC--CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHH--HccCCCE----EEE
Q 007982 440 AEK-LDMDMSALQYMIK-EY--PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWL--AYRQPHM----LLL 509 (582)
Q Consensus 440 ~~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAra--l~~~p~l----LlL 509 (582)
... .....++.+++.. .. .....+++..+++.+|+..... +.+|||||||||+|||+ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 311 1111233322210 00 0011233556788999976543 47999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecCHH------HHHhhcCE-----EEEEe-CCeEEEEcCCHHHHH
Q 007982 510 DE-PTNHLDIETIDSLAEALNEWDGGLVLVSHDFR------LINQVAHE-----IWVCE-NQAVTRWEGDIMDFK 571 (582)
Q Consensus 510 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~ 571 (582)
|| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|+++ +|+..++.
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~ 337 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR 337 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence 99 99999999 88888999999999999999988 88899999 99999 99996 78887764
No 109
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=1.3e-28 Score=281.18 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcC---CCceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFIN---PTILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 346789999999975345789999999999999999999996 7999999999999999999999988654 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYV 285 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~ 285 (582)
|+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 9999999999 789999999 689997 467877664
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=8.7e-28 Score=257.29 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEE----eC
Q 007982 486 LSDGQRSRVVFAWLAYRQP--HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVC----EN 557 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l----~~ 557 (582)
|||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++ +.+||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 579999999 99
Q ss_pred CeEE
Q 007982 558 QAVT 561 (582)
Q Consensus 558 G~i~ 561 (582)
|+++
T Consensus 375 G~~~ 378 (415)
T 4aby_A 375 GRTV 378 (415)
T ss_dssp TEEE
T ss_pred CceE
Confidence 9885
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=4.2e-28 Score=277.06 Aligned_cols=108 Identities=28% Similarity=0.455 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC---CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 007982 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLDLEACVWLEETLKKF---DRILV 250 (582)
Q Consensus 177 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi 250 (582)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|+++|+++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999753567899999999999999999999875 999999999999999999999988764 78999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHH
Q 007982 251 VISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 251 ivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 286 (582)
+||||++++ .+||+|++| ++|+++ ..|+++++..
T Consensus 903 visHdl~~i-~~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVI-KTADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEcCCHHHH-HhCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 999999998 589999999 689997 4678777653
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=7.1e-28 Score=277.12 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=95.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC---CceeecCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLDLEACVWLEETLKKF---DRIL 249 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv 249 (582)
..++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|+++ +.||
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 4567889999999754567899999999999999999999876 699999999999999999999998765 7899
Q ss_pred EEEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHH
Q 007982 250 VVISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 250 iivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 286 (582)
|+||||++++.. ||+|++| ++|+|+ ..|+++++..
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 999999999865 9999999 889997 5688877653
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2e-27 Score=272.46 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCC---CceeecCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 007982 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINP---TILLLDEPTNHLDLEACVWLEETLKKF---DRILV 250 (582)
Q Consensus 177 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi 250 (582)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345789999999653567899999999999999999999875 999999999999999999999988754 78999
Q ss_pred EEecCHHHHHhhcCeEEEE------eCCeEEEEcCChhHHHH
Q 007982 251 VISHSQDFLNGVCTNIIHM------QNKQLKFYTGNFDQYVQ 286 (582)
Q Consensus 251 ivsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~ 286 (582)
+||||++++ .+||+|++| ++|+++ +.|+++++..
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999999998 589999999 689986 4688777653
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.1e-27 Score=254.36 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEE----eC
Q 007982 200 FSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHM----QN 271 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l----~~ 271 (582)
|||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|+++ +.|||+||||++++ .+||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 579999999 89
Q ss_pred CeEEEE
Q 007982 272 KQLKFY 277 (582)
Q Consensus 272 G~i~~~ 277 (582)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998643
No 115
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-30 Score=276.95 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=139.7
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-c-eeeeeechHHHHHHHHHHHH
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-S-LEAVISCDEERLKLEKEAEI 148 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~ 148 (582)
.+|+++||++.|+ ++||++++|++++|+||||||||||+|+|+|+..++.+ . +. ++.. . ...
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~----vdg~---~---~~~ 180 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY----INLD---P---QQP 180 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE----EECC---T---TSC
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEE----EcCC---c---cCC
Confidence 3688999999886 79999999999999999999999999999999887655 3 32 1110 0 001
Q ss_pred hc--cccC------CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHH--HhcCC
Q 007982 149 LG--AQED------GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARA--LFINP 218 (582)
Q Consensus 149 ~~--~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra--L~~~P 218 (582)
++ ++.. ......++++ ............++.++++.+|+... .+ +.+|||||||||+|||| |+.+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPTW-GQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTTC-SCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eeeeccchhhcccccccchhhhhc-ccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCc
Confidence 11 1111 0001111110 00000000012345667888999753 33 88999999999999999 99999
Q ss_pred Cc----eeecC-CCCCCCHHHHHHHHHHHhhcCcEEEEEecCHH------HHHhhcCe-----EEEEe-CCeEEEEcCCh
Q 007982 219 TI----LLLDE-PTNHLDLEACVWLEETLKKFDRILVVISHSQD------FLNGVCTN-----IIHMQ-NKQLKFYTGNF 281 (582)
Q Consensus 219 ~l----LlLDE-Pt~~LD~~~~~~l~~~l~~~~~tviivsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~ 281 (582)
++ ||||| ||++||+. ...|.+++++++.|+|+||||.+ ++..+||+ |++|+ +|+++ .|+.
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~ 333 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDD 333 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCH
Confidence 99 99999 99999999 88889999999999999999988 88899999 99999 99996 5666
Q ss_pred hH
Q 007982 282 DQ 283 (582)
Q Consensus 282 ~~ 283 (582)
++
T Consensus 334 ~~ 335 (460)
T 2npi_A 334 VY 335 (460)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 116
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=3e-26 Score=241.13 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=74.1
Q ss_pred CCCCCCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcCE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAY------RQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~ 551 (582)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 467899999999999999999 799999999999999999999999998875 5799999999998 578999
Q ss_pred EEEEeCCeEE
Q 007982 552 IWVCENQAVT 561 (582)
Q Consensus 552 i~~l~~G~i~ 561 (582)
|++|++|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=7.3e-26 Score=238.23 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=75.5
Q ss_pred hccCCCCChhHHHHHHHHHHHh------cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcC
Q 007982 194 AKKTRDFSGGWRMRIALARALF------INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCT 264 (582)
Q Consensus 194 ~~~~~~LSGGqrqRv~LAraL~------~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d 264 (582)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++.++|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 699999999999999999999999998775 5799999999998 57899
Q ss_pred eEEEEeCCeEE
Q 007982 265 NIIHMQNKQLK 275 (582)
Q Consensus 265 ~i~~l~~G~i~ 275 (582)
++++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=4.4e-26 Score=214.40 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=97.4
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHc
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (582)
|+||++++|++++|+||||||||||++++.+-. . .+..+ .. ...+ ++...........+..+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-----~---~~~~d--~~-----~g~~-~~~~~~~~~~~~~~~~~-- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-----E---VISSD--FC-----RGLM-SDDENDQTVTGAAFDVL-- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-----G---EEEHH--HH-----HHHH-CSSTTCGGGHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-----e---EEccH--HH-----HHHh-cCcccchhhHHHHHHHH--
Confidence 689999999999999999999999999864210 0 11111 10 1112 22222222211122111
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHH----------------
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE---------------- 233 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~---------------- 233 (582)
...+ ......|... .. ......|||||||++||||++.+|++|+|||||++||+.
T Consensus 63 ------~~~~-~~~~~~g~~~-~~-~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 ------HYIV-SKRLQLGKLT-VV-DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp ------HHHH-HHHHHTTCCE-EE-ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred ------HHHH-HHHHhCCCeE-EE-ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 1111 1222345543 22 345677999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh---cCcEEEEEecCHHHHHh
Q 007982 234 ACVWLEETLKK---FDRILVVISHSQDFLNG 261 (582)
Q Consensus 234 ~~~~l~~~l~~---~~~tviivsHd~~~~~~ 261 (582)
....+.+.|++ .+.|+|+||||++++..
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 55888887644 37899999999999875
No 119
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=7.4e-28 Score=233.56 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=97.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc--------CceeEEEechhhhhhc-CCcccHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH--------NHLRIAQFHQHLAEKL-DMDMSAL 450 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~~ 450 (582)
+.+|+++ .+|++++|+||||||||||+++|+|+ +|++|+|... ....++|++|...+.+ .+.....
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~ 87 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLH 87 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHH
Confidence 4688885 89999999999999999999999999 9999998431 1124677777653222 1111111
Q ss_pred HHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 451 QYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
..+. .....+.+.++++. |+ ||||||+|||||+.+|++|||||||++ ++..+.+.|++
T Consensus 88 ~~~~---~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 88 DALR---DMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp HHHT---TTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTT
T ss_pred HHHH---HhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHH
Confidence 1111 10112345666665 43 999999999999999999999999999 88888888887
Q ss_pred c--CceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 531 W--DGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 531 ~--~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
+ +.||| ||||++++.. +...++|.
T Consensus 146 l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 146 LGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp BCTTCEEE-EEEC----------------CC
T ss_pred hcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 6 46888 9999987753 33445554
No 120
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=3.1e-26 Score=215.48 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=96.7
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
|+||+|++|++++|+||||||||||++++.+-.. ........++++|...... ......+. ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~d~~~g~~~~~~~~~~-~~~~~~~~---------~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISSDFCRGLMSDDENDQT-VTGAAFDV---------LHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEHHHHHHHHCSSTTCGG-GHHHHHHH---------HHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEccHHHHHHhcCcccchh-hHHHHHHH---------HHH
Confidence 6899999999999999999999999998653211 1111101122222211100 00000110 011
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE----------------TIDSLAEAL 528 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l 528 (582)
........|...... . ....||||||||+|||+++.+|++|+|||||++||+. ....+.+.|
T Consensus 65 ~~~~~~~~g~~~~~~-~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVD-A-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHHHHHHTTCCEEEE-S-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEE-C-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 122223445544333 2 2467999999999999999999999999999999999 557777775
Q ss_pred Hh---cCceEEEEecCHHHHHhh
Q 007982 529 NE---WDGGLVLVSHDFRLINQV 548 (582)
Q Consensus 529 ~~---~~~tvi~vsHd~~~~~~~ 548 (582)
++ .+.|+|+||||++++..+
T Consensus 143 ~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 143 KGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TTHHHHTCSEEEEECSHHHHHHE
T ss_pred hhHHhcCCcEEEEeCCHHHhhhh
Confidence 44 377999999999999753
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=3.3e-25 Score=209.80 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEc-----CceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRH-----NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~-----~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
+++|+||||||||||+++|+|++... .|..... ....+++.+|... ... . +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~---~~~-~----~--------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE---GKK-K----I--------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT---CCE-E----E---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc---HHH-H----H---------------
Confidence 68999999999999999999998521 2322110 1123555555431 000 0 0
Q ss_pred HHhcCCCC-ccccCCCCCCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCceEEEEe-
Q 007982 469 IGRFGLTG-KAQVMPMKNLSDGQRSRVVFAWL-----AYRQPHMLLLDE--PTNHLDIETIDSLAEALNEWDGGLVLVS- 539 (582)
Q Consensus 469 l~~~gl~~-~~~~~~~~~LSgGqkqrv~lAra-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs- 539 (582)
+..++... ....+++.+||||||||++||++ ++.+|++||||| ||++||+.....+.+.+.+.+.++|++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 11111111 12234567899999999999996 999999999999 9999999999999999998777788888
Q ss_pred --cCHHHHHhhcCEEEEEeCCeEEEE-cCCHHHHHHHHHHHcC
Q 007982 540 --HDFRLINQVAHEIWVCENQAVTRW-EGDIMDFKLHLKAKAG 579 (582)
Q Consensus 540 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~~~~~~ 579 (582)
||.+++..+|++ .+|+++.+ ..+.+++.+.+.+.+.
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~~~ 177 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSLLE 177 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHHSC
T ss_pred cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHHHh
Confidence 599999999998 44555433 3555677777766553
No 122
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1e-23 Score=218.29 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=76.6
Q ss_pred hhccCCCCChhHHHHHHHHHHHh----cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeE
Q 007982 193 QAKKTRDFSGGWRMRIALARALF----INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNI 266 (582)
Q Consensus 193 ~~~~~~~LSGGqrqRv~LAraL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i 266 (582)
.+.++.+|||||||||+||+||+ .+|++|||||||++||+..+..+.++|+++ +.++|+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 45678899999999999999997 588999999999999999999999999877 569999999965 56789987
Q ss_pred --EEEeCCeEEEEcCChhH
Q 007982 267 --IHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 267 --~~l~~G~i~~~~g~~~~ 283 (582)
++|.+|.-.....+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88888887666555544
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=1.3e-23 Score=217.50 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=75.1
Q ss_pred cCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEE-
Q 007982 480 VMPMKNLSDGQRSRVVFAWLAY----RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEI- 552 (582)
Q Consensus 480 ~~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i- 552 (582)
+.++.+|||||||||+||++|+ .+|++|||||||++||+..+..+.+.|+++ +.+||+|||+.+ +..+||++
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~ 292 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH 292 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence 3456899999999999999997 689999999999999999999999999887 568999999975 45789987
Q ss_pred -EEEeCCeEEEEcCCHHH
Q 007982 553 -WVCENQAVTRWEGDIMD 569 (582)
Q Consensus 553 -~~l~~G~i~~~~g~~~~ 569 (582)
++|.+|.......+.++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 88888887655666555
No 124
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=1.6e-26 Score=224.20 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred EECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchH
Q 007982 81 TFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160 (582)
Q Consensus 81 ~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (582)
+|+++.+|+++ ++|++++|+||||||||||+++|+|+ +|+.|.+... ......... ...+++.++.....+
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~~~~~~~---~~~ig~v~q~~~enl 79 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILTRPAVEA---GEKLGFLPGTLNEKI 79 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEEECSCCT---TCCCCSSCC------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-EecCCchhh---hcceEEecCCHHHHH
Confidence 45667788886 89999999999999999999999999 8776655321 111000000 011221111110000
Q ss_pred ----HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHH
Q 007982 161 ----ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV 236 (582)
Q Consensus 161 ----~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~ 236 (582)
...+..+.... ...++.++++. |+ ||||||+|||||+.+|++|||||||++ ++.
T Consensus 80 ~~~~~~~~~~~~~~~---~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 80 DPYLRPLHDALRDMV---EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp CTTTHHHHHHHTTTS---CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 00111111100 01234444443 32 999999999999999999999999999 888
Q ss_pred HHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEEeCC
Q 007982 237 WLEETLKKF--DRILVVISHSQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 237 ~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l~~G 272 (582)
.+.++|+++ +.||| ||||++++.. +..+.+|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC----------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCc
Confidence 888888876 56888 9999987653 3444555
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=1.7e-24 Score=204.89 Aligned_cols=74 Identities=5% Similarity=0.005 Sum_probs=68.4
Q ss_pred hhhccCCCCChhHHHHHHHHHH-----HhcCCCceeecC--CCCCCCHHHHHHHHHHHhhcCcEEEEEe---cCHHHHHh
Q 007982 192 MQAKKTRDFSGGWRMRIALARA-----LFINPTILLLDE--PTNHLDLEACVWLEETLKKFDRILVVIS---HSQDFLNG 261 (582)
Q Consensus 192 ~~~~~~~~LSGGqrqRv~LAra-----L~~~P~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tviivs---Hd~~~~~~ 261 (582)
..++++.+||||||||++||+| |+.+|++||||| ||++||+..+.++.+.+.+.+.|+|++| ||++++..
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH
Confidence 3567889999999999999996 999999999999 9999999999999999998777788888 59999999
Q ss_pred hcCe
Q 007982 262 VCTN 265 (582)
Q Consensus 262 ~~d~ 265 (582)
+|++
T Consensus 149 i~~r 152 (178)
T 1ye8_A 149 IRRL 152 (178)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 9998
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.6e-25 Score=237.66 Aligned_cols=171 Identities=9% Similarity=0.011 Sum_probs=128.7
Q ss_pred ceeeEeeeEEEecCC--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--eEEEech
Q 007982 380 NLIYKNLDFGVDLDS--------------------RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--RIAQFHQ 437 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge--------------------~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--~~~~~~q 437 (582)
+.+++++||+|.+|+ ++||+||||||||||+|+|+|+++|++|+|...+.. +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 999999999999999999999999999999765421 1245555
Q ss_pred hhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChh--HHHHHHHHHHHcc----------CCC
Q 007982 438 HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDG--QRSRVVFAWLAYR----------QPH 505 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv~lAral~~----------~p~ 505 (582)
+. .....++.++...... ...+.++++.+++.+.. ..+ . ||+| |+||+.||++|+. +|+
T Consensus 116 ~~---~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CS---SCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cc---ccCCeeehHhhcccch---HHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 42 1122233222211111 23467889999987542 233 3 9999 9999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--------C----ceEEEEecCHHH--HHhhcCEEE-EEeCCe
Q 007982 506 MLLLDEPTNHLDIETIDSLAEALNEW--------D----GGLVLVSHDFRL--INQVAHEIW-VCENQA 559 (582)
Q Consensus 506 lLlLDEPt~~LD~~~~~~l~~~l~~~--------~----~tvi~vsHd~~~--~~~~~d~i~-~l~~G~ 559 (582)
+|+|||||+|||+.++..+.+.|+++ + .+|+++||+++. +.++||+|. .+..|+
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999988887776554 1 358889999987 889999885 344444
No 127
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=2.1e-21 Score=202.36 Aligned_cols=81 Identities=27% Similarity=0.417 Sum_probs=70.4
Q ss_pred hhccCCCCChhHHH------HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhc
Q 007982 193 QAKKTRDFSGGWRM------RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVC 263 (582)
Q Consensus 193 ~~~~~~~LSGGqrq------Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~ 263 (582)
.++++.+||||||| |+++|++|+.+|++|||||||+|||+..+..+.++|+++ +.|||+||||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 35788999999999 678888888999999999999999999999999998765 469999999965 56799
Q ss_pred CeEEEEe--CCeE
Q 007982 264 TNIIHMQ--NKQL 274 (582)
Q Consensus 264 d~i~~l~--~G~i 274 (582)
|++++|+ +|..
T Consensus 321 d~~~~l~~~~g~s 333 (339)
T 3qkt_A 321 DHVIRISLENGSS 333 (339)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEecCCcc
Confidence 9999986 4543
No 128
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=9e-26 Score=230.26 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=122.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDM 445 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~ 445 (582)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|.. +++|... + +
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~-------~v~q~~~--l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS-------FANHKSH--F-W 165 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC-------GGGTTSG--G-G
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE-------EecCccc--c-c
Confidence 488999999996 57999999999999999999999999999999999999 799853 3334321 1 1
Q ss_pred cccHHH-HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 446 DMSALQ-YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 446 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
..++.+ ++... +... ..+.+.++.+ +..... ...|||||||| |||++.+|+||| |++||+.+...+
T Consensus 166 ~~ti~~~ni~~~-~~~~-~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 166 LASLADTRAALV-DDAT-HACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp GGGGTTCSCEEE-EEEC-HHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred cccHHHHhhccC-cccc-HHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 112221 11110 1111 2455566664 443222 46899999999 999999999999 999999998877
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHH
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLK 575 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~ 575 (582)
.. +||++..+ ..||+| +|++|+++ ..|+.+++....+
T Consensus 233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el~~~y~ 269 (305)
T 2v9p_A 233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADWKSFFV 269 (305)
T ss_dssp GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHHHHHHH
T ss_pred HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHHHHHHH
Confidence 52 29999876 689999 99999996 5899998844343
No 129
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=1.8e-20 Score=195.82 Aligned_cols=85 Identities=18% Similarity=0.069 Sum_probs=76.1
Q ss_pred hccCC-CCChhHHHHHHHHHHHh---------cCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhc
Q 007982 194 AKKTR-DFSGGWRMRIALARALF---------INPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVC 263 (582)
Q Consensus 194 ~~~~~-~LSGGqrqRv~LAraL~---------~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~ 263 (582)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||. +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 45677 79999999999999999 8999999999999999999999999999887899999995 43 89
Q ss_pred CeEEEEeCCeEEEEcCChhH
Q 007982 264 TNIIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 264 d~i~~l~~G~i~~~~g~~~~ 283 (582)
|++++|++|+++. .|++++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTT
T ss_pred CEEEEEECCEEEe-cCCHHH
Confidence 9999999999974 566554
No 130
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=1e-20 Score=197.17 Aligned_cols=80 Identities=30% Similarity=0.402 Sum_probs=68.7
Q ss_pred cCCCCCCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcC
Q 007982 480 VMPMKNLSDGQRS------RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 480 ~~~~~~LSgGqkq------rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d 550 (582)
.+++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.+.|.++ +.+||+||||.++ ..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence 3467899999999 677888888999999999999999999999999998875 4589999999764 57999
Q ss_pred EEEEEe--CCeE
Q 007982 551 EIWVCE--NQAV 560 (582)
Q Consensus 551 ~i~~l~--~G~i 560 (582)
++++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999985 5543
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=1.2e-22 Score=207.81 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------------eeEEEechhhhhhcCCc
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------------LRIAQFHQHLAEKLDMD 446 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~ 446 (582)
.++||++.+|++++|+||||||||||++.|+|+++|++|+|...+. ..+++++|... ...+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 4578889999999999999999999999999999999999986542 12566666532 02333
Q ss_pred ccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q 007982 447 MSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~ 523 (582)
.++.+++.... ...+ ..+++.+|+.+... .++.+|| +||++|||+++.+|+ +|+|| ||+|||+....
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCCH-HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcchh-HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-
Confidence 45555543210 0100 12456778765443 4567899 999999999999999 99999 99999997652
Q ss_pred HHHHHHhcCceEEEEec---------CHHHHHhhcCEEEEEeCCeE
Q 007982 524 LAEALNEWDGGLVLVSH---------DFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 524 l~~~l~~~~~tvi~vsH---------d~~~~~~~~d~i~~l~~G~i 560 (582)
.+.-+..+.|+|++|| .+..+..++..|.++..|+.
T Consensus 240 -~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 240 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 3333356889999999 66778788899999999965
No 132
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=8.7e-23 Score=211.73 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=106.9
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|...+...+. .+++ ..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~-------------------~~-- 217 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHH-------------------KN-- 217 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSC-------------------SS--
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccc-------------------hh--
Confidence 7899999999999999999999999999999999999999999886542100 0000 00
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD 541 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 541 (582)
.+++ . .. |||+||++||+||..+|++|||||||+ .+..+ +.+.+..-+.|+|+++|+
T Consensus 218 ---------~i~~---~-----~g--gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~-~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL---F-----FG--GNITSADCLKSCLRMRPDRIILGELRS---SEAYD-FYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE---E-----CB--TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHH-HHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE---E-----eC--CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHH-HHHHHhcCCCEEEEEEcc
Confidence 0000 0 01 899999999999999999999999998 23222 223333323479999999
Q ss_pred HHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 542 FRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 542 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
.+ +...|||+++|.+|......-+.+.....+..
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~ 308 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKD 308 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHT
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHH
Confidence 99 66899999999887531112344444444443
No 133
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=1.3e-23 Score=222.87 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=120.9
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHH
Q 007982 85 HDLIVDSELELNYGR--------------------RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK 144 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge--------------------~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 144 (582)
+.+|+++||+|++|+ +++|+||||||||||+|+|+|+.+++.+.+. ..+.... .
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~----~~g~~~t--~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK----TGVVEVT--M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC----CCC------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE----ECCeecc--e
Confidence 468999999999999 9999999999999999999999888765432 1111110 0
Q ss_pred HHHHhccccCC--CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChh--HHHHHHHHHHHhc----
Q 007982 145 EAEILGAQEDG--GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGG--WRMRIALARALFI---- 216 (582)
Q Consensus 145 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG--qrqRv~LAraL~~---- 216 (582)
..+.++... .....+.. .+. ....++.++++.+++.+. +..+. |||| |+||++||+||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~-----g~~--~~~~~~~~~L~~~~L~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p 177 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLP-----GIG--STNFPPDTYLEKMKFYEY--DFFII-ISATRFKKNDIDIAKAISMMKKE 177 (413)
T ss_dssp --CCEEEECSSCTTEEEEECC-----CGG--GSSCCHHHHHHHTTGGGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCE
T ss_pred --eEEeccccccCCeeehHhh-----ccc--chHHHHHHHHHHcCCCcc--CCeEE-eCCCCccHHHHHHHHHHHhcCCC
Confidence 011111110 00000000 000 012357788999988642 33444 9999 9999999999999
Q ss_pred ------CCCceeecCCCCCCCHHHHHHHHHHHhhc------------CcEEEEEecCHHH--HHhhcCeEE-EEeCCe
Q 007982 217 ------NPTILLLDEPTNHLDLEACVWLEETLKKF------------DRILVVISHSQDF--LNGVCTNII-HMQNKQ 273 (582)
Q Consensus 217 ------~P~lLlLDEPt~~LD~~~~~~l~~~l~~~------------~~tviivsHd~~~--~~~~~d~i~-~l~~G~ 273 (582)
+|++|||||||++||+.++..+.+.|+++ ..+++++||+++. ++.+||+|. .|..|.
T Consensus 178 ~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 178 FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred eEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 99999999999999999998888776553 2468899999887 899999985 454444
No 134
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=1.2e-24 Score=221.95 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=111.9
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
+|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|+. .|.+. .+..+...+.. ..+..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---~~v~q~~~lf~--~ti~~ 171 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---SFANHKSHFWL--ASLAD 171 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---CGGGTTSGGGG--GGGTT
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---EEecCcccccc--ccHHH
Confidence 589999999998 78999999999999999999999999999999999987 23221 11111000000 00000
Q ss_pred ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCC
Q 007982 152 QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLD 231 (582)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD 231 (582)
...... .... ..+.+.++.+ ++.. .+ +..|||||||| ||||+.+|+||| |++||
T Consensus 172 --~ni~~~--------~~~~-----~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD 225 (305)
T 2v9p_A 172 --TRAALV--------DDAT-----HACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNID 225 (305)
T ss_dssp --CSCEEE--------EEEC-----HHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSC
T ss_pred --HhhccC--------cccc-----HHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCC
Confidence 000000 0000 1234445553 3332 23 78999999999 999999999999 99999
Q ss_pred HHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCeEEEEcCChhHH
Q 007982 232 LEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQY 284 (582)
Q Consensus 232 ~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 284 (582)
+.+...+.. +||++..+ ..||+| +|++|+++ +.|+.+++
T Consensus 226 ~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 226 VQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp STTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred HHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 998887752 28998875 589999 99999996 56776654
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=1.1e-19 Score=189.78 Aligned_cols=85 Identities=20% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCCC-CCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcC
Q 007982 481 MPMK-NLSDGQRSRVVFAWLAY---------RQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 481 ~~~~-~LSgGqkqrv~lAral~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d 550 (582)
+|+. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.+.++..|+|++||+ +. .||
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA 335 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence 4566 79999999999999999 8999999999999999999999999999888889999995 43 899
Q ss_pred EEEEEeCCeEEEEcCCHHHH
Q 007982 551 EIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 551 ~i~~l~~G~i~~~~g~~~~~ 570 (582)
++++|++|++. ..|+++++
T Consensus 336 ~i~~l~~G~i~-~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFT-PVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEE-ECCCTTTS
T ss_pred EEEEEECCEEE-ecCCHHHH
Confidence 99999999997 47877654
No 136
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.82 E-value=2.6e-22 Score=215.41 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=131.7
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce------------
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL------------ 430 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~------------ 430 (582)
++++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|...+..
T Consensus 128 ~~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 128 PFNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 346789999999996446799999 9999999999999999999999999999999999999876541
Q ss_pred -------eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcC--CCCccccCCCCCCChhHHHHHHHHHHHc
Q 007982 431 -------RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFG--LTGKAQVMPMKNLSDGQRSRVVFAWLAY 501 (582)
Q Consensus 431 -------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~~~~~~~~~~~LSgGqkqrv~lAral~ 501 (582)
.+++++|... .+....++.++... ..++....+ +.... + .+..||+|| |||+|| +
T Consensus 207 ~~~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~l-d-~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADV-SPLLRMQGAAYATR---------IAEDFRDRGQHVLLIM-D-SLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp HHHHHHTEEEEEECTTS-CHHHHHHHHHHHHH---------HHHHHHTTTCEEEEEE-E-CHHHHHHHH-HHHHHH---T
T ss_pred cccccCceEEEEECCCC-CHHHHHHHHHHHHH---------HHHHHHhCCCCHHHHH-H-hHHHHHHHH-HHHHHH---h
Confidence 2455555311 01111222222211 011111111 11111 1 246899999 999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEWD------G------GLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
.+|++ |+|||+.....+.+++.+.. + ||+++|||++ ..+||++++|.+|+++ .+++..+
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~~ 341 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLAE 341 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHHH
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHHH
Confidence 88888 99999999999999997752 3 8999999999 6789999999999986 3555443
No 137
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=1.8e-23 Score=204.33 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=103.5
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc------------eeEEEechhhhhhcCCccc
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH------------LRIAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~------------~~~~~~~q~~~~~~~~~~~ 448 (582)
.-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.. +. ..++|++|...... ..+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE--DKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--HHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--Hhh
Confidence 4689999999999999999999999999999999998 6 88876 21 12345555432100 000
Q ss_pred H-HHHHH-----hcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH-----HHHHccCCCEEEEeCCCCCCC
Q 007982 449 A-LQYMI-----KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF-----AWLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 449 ~-~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l-----Aral~~~p~lLlLDEPt~~LD 517 (582)
. .+++. ..........+.++++...+. .. . .+|||||+||++| |++++.+|++++|||||+++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il--~-~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LF--E-MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EE--E-ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EE--E-ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 0 00000 000011234567777765432 11 1 4799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhc----------CceEEEEecCHHHHHhhcCEEEE
Q 007982 518 IETIDSLAEALNEW----------DGGLVLVSHDFRLINQVAHEIWV 554 (582)
Q Consensus 518 ~~~~~~l~~~l~~~----------~~tvi~vsHd~~~~~~~~d~i~~ 554 (582)
.++...+.+.+... ....|+|+||++.+...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 98877777766532 24577888888887777766553
No 138
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=2.4e-23 Score=201.62 Aligned_cols=161 Identities=13% Similarity=0.053 Sum_probs=97.3
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC-------ceeEEEechhhhhhcCCcccHHHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-------HLRIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~-------~~~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
.++++| .+|.+|++++|+||||||||||+++|+|++++..+.+.... ...++|++|..... ...++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhcCC
Confidence 457777 68999999999999999999999999999853322211100 12356666654311 11111111
Q ss_pred HH------h--cCCCCh----HHHHHHH------HHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 453 MI------K--EYPGNE----EEKMRAA------IGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 453 ~~------~--~~~~~~----~~~~~~~------l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
+. . ...... .+.+.+. ++.+|+..... ..+..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 0 000111 1223333 44455543333 3346777 8899999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEEEEe
Q 007982 515 HL----DIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 515 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
++ |+..+..+.+.+.++ +.|+|+||||++++..+||+|++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888888777654 5699999999999999999999984
No 139
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=2.6e-19 Score=196.92 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=70.3
Q ss_pred CCCCCC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEEE
Q 007982 481 MPMKNL-SDGQRSRVVFAWLAYRQP--HMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 481 ~~~~~L-SgGqkqrv~lAral~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
+|+..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|+++ +.+||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999998776 679999999999885 69999999
Q ss_pred eCC
Q 007982 556 ENQ 558 (582)
Q Consensus 556 ~~G 558 (582)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
No 140
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1e-22 Score=197.25 Aligned_cols=165 Identities=13% Similarity=0.013 Sum_probs=95.8
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC------------Cceee--eeechHHHHHHHHHHHHhcc
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM------------SSLEA--VISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~------------~~~~~--~i~~~~~~~~~~~~~~~~~~ 151 (582)
.+++| .+|++|++++|+||||||||||+++|+|+.+... +...+ .+..+... +.... ...
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~--~~~ 83 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLI--DQG 83 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHH--HTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHH--hcC
Confidence 46666 6999999999999999999999999998874110 00000 00000000 00000 000
Q ss_pred ccCCCcchHHHHHHHHHcCChhHHHHHHHHH------HHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 152 QEDGGGEQLERVYERLEALDASTAEKRAAEI------LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
..........++ .+...+....++++.+. ++.+|+. ...++++..|| +|+.+|++++|||
T Consensus 84 ~l~~~~~~~~n~--~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDe 149 (207)
T 1znw_A 84 ELLEWAEIHGGL--HRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQA 149 (207)
T ss_dssp CEEEEEEEGGGT--EEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHH
T ss_pred CceeehhhcCch--hhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHH
Confidence 000000000000 00011222334445554 4555553 34567888888 9999999999999
Q ss_pred CCCCC----CHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEEEEe
Q 007982 226 PTNHL----DLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNIIHMQ 270 (582)
Q Consensus 226 Pt~~L----D~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~~l~ 270 (582)
||++| |+..+..+.++++++ +.|+|+||||++++..+||+|++|.
T Consensus 150 p~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99998 778888888877654 5799999999999999999999985
No 141
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=1.2e-20 Score=220.81 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCeEEEEE-----EEEEecCCceeeEeeeEEEec-------CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCcee
Q 007982 364 PPVLQFVE-----VTFGYTPDNLIYKNLDFGVDL-------DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR 431 (582)
Q Consensus 364 ~~~l~~~~-----l~~~y~~~~~~l~~vsl~i~~-------Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~ 431 (582)
.++|++++ |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+. ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 46799999 999995456799999999987 899999999999999999999 988642 12
Q ss_pred EE-EechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 432 IA-QFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 432 ~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
+| |++|... ..++.+. ++.++|+.+... ...+++|+++++ +++|++++.+|.|||||
T Consensus 818 iG~~Vpq~~~-----~l~v~d~---------------I~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-----RLTPIDR---------------VFTRLGASDRIM-SGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-----EECCCSB---------------EEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-----CCCHHHH---------------HHHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 33 5555432 1111111 122345543332 234678887765 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHH---Hhc-CceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 511 EPTNHLDIETI-DSLAEAL---NEW-DGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 511 EPt~~LD~~~~-~~l~~~l---~~~-~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
|||+|+|+... ..+...+ .+. +.++|++|||.+++..+||+++++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998763 3334443 333 679999999999999999998887 47765
No 142
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=4.7e-22 Score=207.22 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=127.8
Q ss_pred CCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhh
Q 007982 363 PPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 363 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
++++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+..|+.|.|...+... ......
T Consensus 42 ~~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~ 115 (347)
T 2obl_A 42 PPDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEF 115 (347)
T ss_dssp CSCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHH
T ss_pred CCCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHH
Confidence 456799999999997446789999 99999999999999999999999999999999999887655310 000000
Q ss_pred cCC-cccHHHHH---HhcCCCChHHHHHHHHHhcCCCC---------ccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007982 443 LDM-DMSALQYM---IKEYPGNEEEKMRAAIGRFGLTG---------KAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLL 509 (582)
Q Consensus 443 ~~~-~~~~~~~~---~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlL 509 (582)
... ....++.. ..........++...+..+++.. ...-..+..||+|| |||++| +.+|++
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred HHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 000 00000000 00000111112221111111110 00002457899999 899999 578877
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHH
Q 007982 510 DEPTNHLDIETIDSLAEALNEW-----DG-----GLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMD 569 (582)
Q Consensus 510 DEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~ 569 (582)
|+|||+.....+.+++.+. +. ||+++|||++ ..+||+++++.+|+|+ .+++..+
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~ 252 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE 252 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence 9999999999999999875 23 7999999999 6799999999999996 4655544
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=1.6e-21 Score=203.52 Aligned_cols=164 Identities=14% Similarity=0.099 Sum_probs=121.2
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc-----------------eeEEEechhhhhhcCCcc
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH-----------------LRIAQFHQHLAEKLDMDM 447 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~~ 447 (582)
.+||++.+|++++|+||||||||||++.|+|+++|++|+|...+. ..+++++|... ...+..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChhh
Confidence 478889999999999999999999999999999999999986542 12566666431 022334
Q ss_pred cHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 007982 448 SALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 448 ~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l 524 (582)
++.+++.... ...+ ..+++.+|+.+... ..+.+|| +||++|||+++.+|+ +|+|| ||+|||+.+..
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~-~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRLHTNY-SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCSSCCH-HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCChhhh-hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 4555443210 0000 12456778765443 4567899 999999999999999 99999 99999998653
Q ss_pred HHHHHhcCceEEEEec---------CHHHHHhhcCEEEEEeCCeE
Q 007982 525 AEALNEWDGGLVLVSH---------DFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsH---------d~~~~~~~~d~i~~l~~G~i 560 (582)
.+.-+..+.|+|++|| .+..+...+..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333346889999999 56777788899999998874
No 144
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=5.5e-23 Score=211.39 Aligned_cols=175 Identities=14% Similarity=0.078 Sum_probs=127.4
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEE-----------------------EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFG-----------------------VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD 421 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~-----------------------i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~ 421 (582)
..|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|++.|..
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3588999999994 466666664 88999999999999999999999999999987
Q ss_pred cEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc----CC-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHH
Q 007982 422 GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE----YP-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVF 496 (582)
Q Consensus 422 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~l 496 (582)
|. ..+++++|+.. +.. .++.+++... .+ ..+.+.+.++|+.++ .+... .++..|||||+|||++
T Consensus 119 G~------~~v~~v~qd~~--~~~-~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYP-NAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCC-HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCc-ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhh
Confidence 64 35788888753 222 2666654311 11 123456788888887 44332 3456999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH-HhhcCEEEEEeCC
Q 007982 497 AWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLI-NQVAHEIWVCENQ 558 (582)
Q Consensus 497 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~-~~~~d~i~~l~~G 558 (582)
|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+||.+.. ..+++|.+.+.++
T Consensus 188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998622 12333334568889998774 3345665555443
No 145
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.80 E-value=6.8e-20 Score=187.12 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=110.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC-ceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS-SLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV 163 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (582)
..+|+++++.|++|++++|+||||||||||+++|++...+..+ .+. .+........+.......... .. ......+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~-~~~~e~~~~~~~~r~~~~~~~-~~-~~~~~~l 98 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG-LAMLEESVEETAEDLIGLHNR-VR-LRQSDSL 98 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE-EEESSSCHHHHHHHHHHHHTT-CC-GGGCHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE-EEeCcCCHHHHHHHHHHHHcC-CC-hhhcccc
Confidence 4579999999999999999999999999999999987765533 211 111111111111111111111 11 1111111
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH-HHHHHHHHHHhcCCCceeecCCCC---C---CCH-HHH
Q 007982 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW-RMRIALARALFINPTILLLDEPTN---H---LDL-EAC 235 (582)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqRv~LAraL~~~P~lLlLDEPt~---~---LD~-~~~ 235 (582)
.. ..+........+.++++..++. ....+..+|.++ +||+. |+++..+|++||+||||+ + +|. ...
T Consensus 99 ~~--~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~ 172 (296)
T 1cr0_A 99 KR--EIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (296)
T ss_dssp HH--HHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHH
T ss_pred cc--CCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHH
Confidence 10 0111223344455666544442 223456789999 67776 999999999999999999 4 455 555
Q ss_pred HHHHHHHh----hcCcEEEEEecCH--H--------------------HHHhhcCeEEEEeCCeE
Q 007982 236 VWLEETLK----KFDRILVVISHSQ--D--------------------FLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 236 ~~l~~~l~----~~~~tviivsHd~--~--------------------~~~~~~d~i~~l~~G~i 274 (582)
..+.+.|+ +++.|||++||+. + .+..+||+|++|++|+.
T Consensus 173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 66666664 4578999999994 5 78889999999998864
No 146
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.2e-20 Score=207.95 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALD 171 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 171 (582)
+..|.+|++++|+||||||||||++++++...+.+...- .+........+......+ .++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi-~~~~ee~~~~l~~~~~~~-------------------g~~ 334 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAI-LFAYEESRAQLLRNAYSW-------------------GMD 334 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE-EEESSSCHHHHHHHHHTT-------------------SCC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEE-EEEEeCCHHHHHHHHHHc-------------------CCC
Confidence 458999999999999999999999999987766432111 111111110111111000 111
Q ss_pred hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHH-----HHHHHHHHHh---
Q 007982 172 ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLE-----ACVWLEETLK--- 243 (582)
Q Consensus 172 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~-----~~~~l~~~l~--- 243 (582)
+.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||+. .+..+.++++
T Consensus 335 -------~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 335 -------FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp -------HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred -------HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 111 2234443 2456778999999999999999999999999999 99999998 8887776654
Q ss_pred hcCcEEEEEecCH----------HHHHhhcCeEEEEeCCe
Q 007982 244 KFDRILVVISHSQ----------DFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 244 ~~~~tviivsHd~----------~~~~~~~d~i~~l~~G~ 273 (582)
+.+.|+|+|||+. +++..+||+|++|++|+
T Consensus 405 ~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 405 QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 4578999999999 88889999999999886
No 147
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=3e-19 Score=163.32 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=72.2
Q ss_pred hhccCCCCChhHHHHHHHH------HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhc
Q 007982 193 QAKKTRDFSGGWRMRIALA------RALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVC 263 (582)
Q Consensus 193 ~~~~~~~LSGGqrqRv~LA------raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~ 263 (582)
.++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 8999999999999999999999999999999875 579999999995 57899
Q ss_pred CeEEEEe--CCeE
Q 007982 264 TNIIHMQ--NKQL 274 (582)
Q Consensus 264 d~i~~l~--~G~i 274 (582)
|++++|+ +|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 9999994 5643
No 148
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=1.2e-20 Score=196.51 Aligned_cols=182 Identities=17% Similarity=0.219 Sum_probs=120.1
Q ss_pred ceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHH--
Q 007982 72 DIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEI-- 148 (582)
Q Consensus 72 ~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 148 (582)
.++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+++..++.+.+. .+....... ......
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~-~~G~~~~ev--~~~i~~~~ 120 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA-LIGERGREV--NEFLALLP 120 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE-EESCCHHHH--HHHHTTSC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE-EecccHHHH--HHHHHhhh
Confidence 689999999998 78899999 99999999999999999999999999999887744321 111111111 110000
Q ss_pred -------hccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 149 -------LGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 149 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
+.+...........+...+. ...+.+.+...+-.-...-..+..||+|| |||++| +.+|++
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~r~~~~~~-------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDRPALERMKAAFT-------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp HHHHTTEEEEEECTTSCHHHHHHHHHH-------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred hhhhhceEEEEECCCCCHHHHHHHHHH-------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 00000000001111100000 00111111111110000014678999999 899999 678887
Q ss_pred eecCCCCCCCHHHHHHHHHHHhhc-----Cc-----EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 222 LLDEPTNHLDLEACVWLEETLKKF-----DR-----ILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 222 lLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
|+|||+.....+.+++.+. +. ||+++|||++ ..+||++++|.+|+++.
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 9999999999999999765 33 7999999999 68999999999999964
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=4.6e-21 Score=192.26 Aligned_cols=140 Identities=17% Similarity=0.155 Sum_probs=101.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhhhhcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLAEKLD 444 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~ 444 (582)
+++++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|.|...+. .+.|+++.... +
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~-~- 74 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKS-I- 74 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSS-E-
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcce-e-
Confidence 4556666642 4789999 9999999999999999999999999999998 999976543 12333322100 0
Q ss_pred CcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 007982 445 MDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSL 524 (582)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 524 (582)
... ..+|+.. ..| |++||++|..+|++||||||| |+++...+
T Consensus 75 ------------v~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 75 ------------VNQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp ------------EEE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred ------------eeH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 000 1334321 122 899999999999999999999 99998776
Q ss_pred HHHHHhcCceEEEEecCHHHHHhhcCEEEEE
Q 007982 525 AEALNEWDGGLVLVSHDFRLINQVAHEIWVC 555 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l 555 (582)
.+.. ..+.+|+++||+.+ +..+|||+++|
T Consensus 117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l 145 (261)
T 2eyu_A 117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 145 (261)
T ss_dssp HHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred HHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence 6654 34779999999987 45677876544
No 150
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=1.7e-19 Score=184.19 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=108.6
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEEEcC-ceeEEEechhhh-hhcCCcccHHHHHHh-c
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVRRHN-HLRIAQFHQHLA-EKLDMDMSALQYMIK-E 456 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~~~~-~~~~~~~~q~~~-~~~~~~~~~~~~~~~-~ 456 (582)
.+|+++++.|.+|++++|+||||||||||++.|+|.+.|.+| .|.+.. ......+...+. ..........+.+.. .
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 478999999999999999999999999999999999999878 564321 110000000000 000111111111110 0
Q ss_pred CCCCh-HHHHHHHHHhcCCCCccccCCCCCCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHH
Q 007982 457 YPGNE-EEKMRAAIGRFGLTGKAQVMPMKNLSDGQ-RSRVVFAWLAYRQPHMLLLDEPTN---H---LDI-ETIDSLAEA 527 (582)
Q Consensus 457 ~~~~~-~~~~~~~l~~~gl~~~~~~~~~~~LSgGq-kqrv~lAral~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~ 527 (582)
....+ .+.+.++++..++. .... +..+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~--i~~~-~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~ 178 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFH--LYDS-FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTK 178 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEE--EECC-CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEE--EECC-CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHH
Confidence 00011 12233444433331 2222 25789999 56666 999999999999999999 5 455 555666666
Q ss_pred HH----hcCceEEEEecCH--H--------------------HHHhhcCEEEEEeCCeE
Q 007982 528 LN----EWDGGLVLVSHDF--R--------------------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 528 l~----~~~~tvi~vsHd~--~--------------------~~~~~~d~i~~l~~G~i 560 (582)
|+ +.+.+||++||+. + .+.++||+|++|++|+.
T Consensus 179 L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 64 3478999999995 5 78889999999998864
No 151
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=2.6e-19 Score=207.09 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=102.3
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHH--------hCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHH
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLM--------TGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll--------~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 451 (582)
..+++|++|++.+|++++|+||||||||||||+| .|.+.|..+.. ++.+.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~~~~d--------------- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------VSIVD--------------- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------EECCS---------------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------chHHH---------------
Confidence 4688999999999999999999999999999999 66555543221 11110
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----H
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEPTNHLDIETIDSL----A 525 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~~~~~l----~ 525 (582)
.++.++|+.+. ....+|+|+.+++.+|+++ +.+|+||||||||+|+|+.....+ .
T Consensus 707 ---------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il 767 (934)
T 3thx_A 707 ---------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767 (934)
T ss_dssp ---------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHH
T ss_pred ---------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 12334444322 2246888888888888888 999999999999999999877665 3
Q ss_pred HHHHh-cCceEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 007982 526 EALNE-WDGGLVLVSHDFRLINQVAHEIWVCENQAVT 561 (582)
Q Consensus 526 ~~l~~-~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 561 (582)
+.+.+ .+.++|++|||.++. .+||++..+.+|++.
T Consensus 768 ~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 768 EYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred HHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 33333 478999999998766 699999888888875
No 152
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=7.2e-19 Score=160.81 Aligned_cols=80 Identities=30% Similarity=0.382 Sum_probs=70.7
Q ss_pred cCCCCCCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhcC
Q 007982 480 VMPMKNLSDGQRSRVVFA------WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVLVSHDFRLINQVAH 550 (582)
Q Consensus 480 ~~~~~~LSgGqkqrv~lA------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d 550 (582)
++++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 356789999999999876 8999999999999999999999999999999876 469999999995 568999
Q ss_pred EEEEE--eCCeE
Q 007982 551 EIWVC--ENQAV 560 (582)
Q Consensus 551 ~i~~l--~~G~i 560 (582)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46643
No 153
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2.8e-20 Score=190.38 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=119.7
Q ss_pred eEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHH--HHHhcc
Q 007982 78 LSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKE--AEILGA 151 (582)
Q Consensus 78 ls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~--~~~~~~ 151 (582)
+...|+....++++||++++|++++|+||||||||||+++|+++..++.+.+.. ...+..+. .+... ...+.+
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l-~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM-AAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-ECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE-EeecccchhHHHHHHHHHHhcCceE
Confidence 333444433346789999999999999999999999999999988776554321 11111111 11111 112222
Q ss_pred ccCCC--cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCC
Q 007982 152 QEDGG--GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPT 227 (582)
Q Consensus 152 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt 227 (582)
..+.. ......+++.+... ........+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+|| ||
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~---~~~~~d~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRG---KEEGYDVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHH---HHTTCSEEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred EEecCCccCHHHHHHHHHHHH---HHcCCcchHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 22111 11112222222110 00000113456778764 4567888999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHhhcCcEEEEEec---------CHHHHHhhcCeEEEEeCCeE
Q 007982 228 NHLDLEACVWLEETLKKFDRILVVISH---------SQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~~~tviivsH---------d~~~~~~~~d~i~~l~~G~i 274 (582)
+|||+.... .++-+..+.|+|++|| .++.+..++..|.++..|+.
T Consensus 231 sglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999998653 3333456889999999 57788888999999999864
No 154
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=1.3e-19 Score=212.06 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=108.8
Q ss_pred cceEEee-----eEEEE-CCeeeeEeeeEEEeC-------CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH
Q 007982 71 RDIRIES-----LSVTF-HGHDLIVDSELELNY-------GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE 137 (582)
Q Consensus 71 ~~i~v~n-----ls~~y-~~~~il~~vsl~i~~-------Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~ 137 (582)
.+|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||+| |+...-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~------------ 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM------------ 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH------------
Confidence 3699999 99999 667899999999987 999999999999999999999 654310
Q ss_pred HHHHHHHHHHHhc-cccCCC--cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 138 ERLKLEKEAEILG-AQEDGG--GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
..++ +.+... .... +.++..+|+.+. ..+..+++|+++++ +++|+++
T Consensus 816 ---------aqiG~~Vpq~~~~l~v~-------------------d~I~~rig~~d~-~~~~~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVCRLTPI-------------------DRVFTRLGASDR-IMSGESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ---------HTTTCCEESSEEEECCC-------------------SBEEEECC----------CHHHHHHHH-HHHHHHH
T ss_pred ---------hheeEEeccCcCCCCHH-------------------HHHHHHcCCHHH-HhhchhhhHHHHHH-HHHHHHh
Confidence 0011 000000 0000 011223454432 23456778888775 9999999
Q ss_pred hcCCCceeecCCCCCCCHHHH-HHHHHH---Hhhc-CcEEEEEecCHHHHHhhcCeEEEEeCCeEE
Q 007982 215 FINPTILLLDEPTNHLDLEAC-VWLEET---LKKF-DRILVVISHSQDFLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 215 ~~~P~lLlLDEPt~~LD~~~~-~~l~~~---l~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 275 (582)
+.+|+++||||||+|+|+... ..+..+ |.+. +.++|++||+++++..+||++.++ +|++.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999999998763 333444 4433 789999999999999999999887 47775
No 155
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=6.4e-21 Score=181.93 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------eeEEEechhhhhhcCCcccHHHHHHhcCCCChHH
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (582)
|++++|+||||||||||+++|+|+++ ++| |...+. ..+++.+|.+... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~----~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT----R---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC----E----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc----e----------------
Confidence 78999999999999999999999998 889 754331 2345555543110 0
Q ss_pred HHHHHHHhcCCCCc------cccCCCCCCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhc
Q 007982 464 KMRAAIGRFGLTGK------AQVMPMKNLSDGQRSRV-VFAW---LAYRQPHMLLLDE--PTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 ~~~~~l~~~gl~~~------~~~~~~~~LSgGqkqrv-~lAr---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~ 531 (582)
..+..+++... ....+...+|+||++++ ++++ |+..+|++||||| ||+.+|+...+.|.+++..+
T Consensus 59 ---~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 59 ---GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp ---EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred ---ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 01112222111 11223446999999888 4454 5789999999999 99999999999999999987
Q ss_pred CceEE---EEecCH--HHHHhhcCEEEEEeCCeEEEE-cCCHHHHHHHHHHHc
Q 007982 532 DGGLV---LVSHDF--RLINQVAHEIWVCENQAVTRW-EGDIMDFKLHLKAKA 578 (582)
Q Consensus 532 ~~tvi---~vsHd~--~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~~~~~ 578 (582)
...|| .||||. .++.+++ .+++|+|+.. ..+.+.+.+.+-+.+
T Consensus 136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~~~~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNVTKENRNHLLPDIVTCV 184 (189)
T ss_dssp SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEECCSSSGGGHHHHHHHHH
T ss_pred CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEeChHhHHHHHHHHHHHH
Confidence 55553 456987 5555554 4567777543 345555555554444
No 156
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.76 E-value=2.4e-20 Score=200.08 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=121.7
Q ss_pred cceEEeeeEEEEC-CeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHH---HHH-HH--
Q 007982 71 RDIRIESLSVTFH-GHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEE---RLK-LE-- 143 (582)
Q Consensus 71 ~~i~v~nls~~y~-~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~---~~~-~~-- 143 (582)
..++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+++..++.+. +.+.+. ... +.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~----i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV----VGLIGERGREVKDFIEN 204 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE----EEEESCCHHHHHHHHHT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE----EEEeceecHHHHHHHHh
Confidence 3689999999998 77899999 999999999999999999999999999998877543 222222 111 10
Q ss_pred -----HHHHHhcc--ccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCC-hhhhhccCCCCChhHHHHHHHHHHHh
Q 007982 144 -----KEAEILGA--QEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFN-KTMQAKKTRDFSGGWRMRIALARALF 215 (582)
Q Consensus 144 -----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~LAraL~ 215 (582)
.....+.+ +..........+.+.... ..+....-+-. ..+. ..+..||+|| |||+|| +
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~l-d~l~~lS~g~-qrvslA---l 270 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATR---------IAEDFRDRGQHVLLIM-DSLTRYAMAQ-REIALA---I 270 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH---------HHHHHHTTTCEEEEEE-ECHHHHHHHH-HHHHHH---T
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHH---------HHHHHHhCCCCHHHHH-HhHHHHHHHH-HHHHHH---h
Confidence 01111222 211111111111111110 01111111100 0122 2367899999 999999 8
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhcC------c------EEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKFD------R------ILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
.+|++ |+|||+.....+.+++.+.. . ||+++|||++ ..+||++++|.+|+++.
T Consensus 271 ~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 271 GEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp TCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred CCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 88888 99999999999999997652 2 8999999999 67999999999999964
No 157
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.76 E-value=1.3e-21 Score=202.89 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=95.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.+++++||.+++|++++|+||||||||||+++|+++.+++.+.+ .+++.. .+... .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i----~i~~~~--------e~~~~--~---------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII----SIEDTE--------EIVFK--H---------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE----EEESSC--------CCCCS--S----------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE----EECCee--------ccccc--c----------
Confidence 37899999999999999999999999999999999998875543 222110 00000 0
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
.. +.+++ +.. |||+||++||+||..+|++|||||||+. +... +++.+..-
T Consensus 215 ----~~------------~~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g 264 (330)
T 2pt7_A 215 ----HK------------NYTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSG 264 (330)
T ss_dssp ----CS------------SEEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTT
T ss_pred ----ch------------hEEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcC
Confidence 00 00000 001 8999999999999999999999999982 2222 22333322
Q ss_pred CcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 246 DRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 246 ~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
+.|+|+++|+.+ +...|||+++|.+|.
T Consensus 265 ~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 265 HKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 347999999998 778999999998875
No 158
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=5.9e-19 Score=204.09 Aligned_cols=154 Identities=17% Similarity=0.097 Sum_probs=106.6
Q ss_pred ceEEeeeEEEE-----CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc--------CCCCCCCceeeeeechHH
Q 007982 72 DIRIESLSVTF-----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE--------IEASDMSSLEAVISCDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y-----~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~--------~~~~~~~~~~~~i~~~~~ 138 (582)
.|.+++...-+ ++..+++|++|++++|++++|+||||||||||||+|+. ...|... ..+.
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~---~~~~---- 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES---AEVS---- 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE---EEEE----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc---ccch----
Confidence 46666654333 23568999999999999999999999999999999953 2111100 0000
Q ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH--hc
Q 007982 139 RLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL--FI 216 (582)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~ 216 (582)
.+..++..+|+.+ .....+|+|+.+++.+|+++ +.
T Consensus 704 ---------------------------------------~~d~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~ 740 (934)
T 3thx_A 704 ---------------------------------------IVDCILARVGAGD----SQLKGVSTFMAEMLETASILRSAT 740 (934)
T ss_dssp ---------------------------------------CCSEEEEECC-------------CHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------HHHHHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhcc
Confidence 0012334455432 23456888888888888888 99
Q ss_pred CCCceeecCCCCCCCHHHHHHH----HHHHhh-cCcEEEEEecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 217 NPTILLLDEPTNHLDLEACVWL----EETLKK-FDRILVVISHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l----~~~l~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
+|++|||||||+|||+.....+ .+.+.+ .+.++|++||+.++. .+||++..|.+|++..
T Consensus 741 ~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 741 KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTA 804 (934)
T ss_dssp TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEE
Confidence 9999999999999999877655 344443 478999999997655 6999999999998864
No 159
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=5.8e-21 Score=186.58 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=90.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVY 164 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (582)
..-|+|+||+|++|++++|+||||||||||+++|+|+.+ |.+...+........ ......+.+.+.. ...+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~i~~g~~~~~~~~~-~~~~~~i~~~~~~-----~~~~ 80 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP---NYFYFSVSCTTRKKR-EKEKEGVDYYFID-----KTIF 80 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST---TTEEECCCEECSCCC-SSCCBTTTBEECC-----HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC---CcEEEeecccCCCCC-cccccCCeEEECC-----HHHH
Confidence 457999999999999999999999999999999999873 222211100000000 0000000000000 0000
Q ss_pred HHHH----c-----C-C--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHH-----HHHHhcCCCceeecCCC
Q 007982 165 ERLE----A-----L-D--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIAL-----ARALFINPTILLLDEPT 227 (582)
Q Consensus 165 ~~l~----~-----~-~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L-----AraL~~~P~lLlLDEPt 227 (582)
..+. . + . .......+.++++...+. ..+ .+|||||+||++| |++|+.+|++++|||||
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp HHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred HHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 0000 0 0 0 000123456666655431 222 5899999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhc----------CcEEEEEecCHHHHHhhcCeEE
Q 007982 228 NHLDLEACVWLEETLKKF----------DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 228 ~~LD~~~~~~l~~~l~~~----------~~tviivsHd~~~~~~~~d~i~ 267 (582)
+++|..+...+.+.|.+. ....|+++||++.+...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 999998877777766542 2345556666665555555444
No 160
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.74 E-value=1.1e-21 Score=201.83 Aligned_cols=179 Identities=12% Similarity=0.034 Sum_probs=115.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEE-----------------------EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELE-----------------------LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~-----------------------i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
.|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|+..+..+.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 689999999995 566666654 7899999999999999999999999987764331
Q ss_pred -eeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 129 -LEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 129 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
..+.+..+...... ...+.+..... ...+.......+.++|+.++ .. ..+.++..|||||+||
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~~-------------~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qR 184 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMHR-------------KGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDI 184 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTTC-------------TTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhh
Confidence 11222222111000 11111111000 01111122345666777776 32 2346788999999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHH-HhhcCeEEEEeCCe
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL-NGVCTNIIHMQNKQ 273 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~-~~~~d~i~~l~~G~ 273 (582)
+++|+|++.+|+|||||||+..+|+.. ..+.++--.+|+|+|+.+.. ..+++|.+.+.++.
T Consensus 185 v~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 185 IPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred hhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998521 12333323457788887663 44566666555543
No 161
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=2.5e-19 Score=186.83 Aligned_cols=175 Identities=12% Similarity=0.079 Sum_probs=115.3
Q ss_pred EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHHH--HHHhccccCC-C-cchH
Q 007982 89 VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEKE--AEILGAQEDG-G-GEQL 160 (582)
Q Consensus 89 ~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~~--~~~~~~~~~~-~-~~~~ 160 (582)
..+||++++|++++|+||||||||||+++|+++..++.+.+.. ...+..+. .+... ...+.+.... . ....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l-~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM-AAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-ECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE-ecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 4688999999999999999999999999999988766554321 11111111 11111 1122222211 1 1222
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHH
Q 007982 161 ERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWL 238 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l 238 (582)
..+++.+... .....-..+++.+|+.+ ..++++.+|| +||++|||||+.+|+ +|+|| ||+|||+.+..
T Consensus 227 ~tv~e~l~~~---~~~~~d~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-- 296 (359)
T 2og2_A 227 TVLSKAVKRG---KEEGYDVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 296 (359)
T ss_dssp HHHHHHHHHH---HHTTCSEEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred hhHHHHHHHH---HhCCCHHHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--
Confidence 2222222100 00000013456778764 3567888999 999999999999999 99999 99999998653
Q ss_pred HHHHhhcCcEEEEEec---------CHHHHHhhcCeEEEEeCCeE
Q 007982 239 EETLKKFDRILVVISH---------SQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 239 ~~~l~~~~~tviivsH---------d~~~~~~~~d~i~~l~~G~i 274 (582)
.++-+..+.|+|++|| .+..+..++..|.++..|+.
T Consensus 297 ~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3333456889999999 46777888899999998864
No 162
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=2.1e-20 Score=188.40 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc--------eeEEEechhhhhhcCCcccHHHHHHhcCC---CChHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH--------LRIAQFHQHLAEKLDMDMSALQYMIKEYP---GNEEE 463 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~ 463 (582)
.++|+||||||||||+++|+|+..|++|+|...+. ..+++++|... +....|+.+++..... ....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 47999999999999999999999999999876542 35788888643 3344455444322111 11112
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHH
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFR 543 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 543 (582)
.+..++. .. .......+|||||+|||++||+++. +++|||||.+||+.....+ +.+.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~~-~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l-~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----EQ-YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFM-KHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----HH-HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHH-HHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----HH-HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHH-HHHHhc-CcEEEEEeccc
Confidence 3333333 12 2223457999999999999999886 9999999999999885544 445554 78888888765
Q ss_pred H
Q 007982 544 L 544 (582)
Q Consensus 544 ~ 544 (582)
.
T Consensus 152 ~ 152 (270)
T 3sop_A 152 T 152 (270)
T ss_dssp G
T ss_pred c
Confidence 3
No 163
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=1.2e-18 Score=172.37 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=96.7
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh--CCCCCCCcEEEEcCceeEEEechhhhhhc
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT--GDLVPLDGMVRRHNHLRIAQFHQHLAEKL 443 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~--Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~ 443 (582)
++++++++..|++-..++.+ .|++|++++|+||||||||||+++|+ |++.+..|.+............+.. ..+
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREM-ASF 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH-HTT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-HHc
Confidence 35566666655421123322 68999999999999999999999999 7645666665543321100000000 000
Q ss_pred CCcccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC-----
Q 007982 444 DMDMSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLD----- 517 (582)
Q Consensus 444 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD----- 517 (582)
.....+...... ...+. ... ..+.............+-++......+..-..+|++|+|||||++||
T Consensus 82 --g~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 82 --GWDFEKYEKEGKIAIVDG--VSS---VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp --TCCHHHHHHTTSEEEEC------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred --CCChHHHhhcCCEEEEEc--ccc---ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 001111000000 00000 000 00000000000112234556555566666678999999999999997
Q ss_pred HHHHHHHHHHHH---hcCceEEEEecCHHHH---------Hhhc-CEEEEEe
Q 007982 518 IETIDSLAEALN---EWDGGLVLVSHDFRLI---------NQVA-HEIWVCE 556 (582)
Q Consensus 518 ~~~~~~l~~~l~---~~~~tvi~vsHd~~~~---------~~~~-d~i~~l~ 556 (582)
+..+..+.++++ +.+.|||+|||+++.+ ..+| |+|++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 555555666554 4578999999999998 6888 9999995
No 164
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=9.3e-19 Score=201.87 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=94.4
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
+..+++|++|++.+|++++|+||||||||||||+|+++... ..|.........++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~----------------------- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI----------------------- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC-----------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH-----------------------
Confidence 35789999999999999999999999999999999754211 011000000000110
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHh----cC
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLA-EALNE----WD 532 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~----~~ 532 (582)
+..++.++|+.+... ...+++|+|++|++.++++ +.+|+||||||||+|||+.....+. ..+.. .+
T Consensus 716 -------~d~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g 786 (918)
T 3thx_B 716 -------VDGIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK 786 (918)
T ss_dssp -------CSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 011233445544332 3457899999999999999 8999999999999999998877665 34332 46
Q ss_pred ceEEEEecCHHHHHhhcCE
Q 007982 533 GGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 533 ~tvi~vsHd~~~~~~~~d~ 551 (582)
.+||++|||.+++ .+||+
T Consensus 787 ~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 787 SLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp CEEEEECSCGGGG-GHHHH
T ss_pred CeEEEEeCcHHHH-HHHhh
Confidence 8999999998876 45554
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=6.5e-19 Score=203.17 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=99.5
Q ss_pred ceEEeeeEEEE-------CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHH
Q 007982 72 DIRIESLSVTF-------HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEK 144 (582)
Q Consensus 72 ~i~v~nls~~y-------~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 144 (582)
.|.+++...-+ ++..+++|+||++++|++++|+||||||||||||+|+++...
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46666654332 246789999999999999999999999999999999743110
Q ss_pred HHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeec
Q 007982 145 EAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLD 224 (582)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLD 224 (582)
.....+.+..... +. .+..++..+|+.+. ..+..+.+|+||+|++.|+++ +.+|++||||
T Consensus 700 -aq~g~~vpa~~~~--------i~---------~~d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLD 759 (918)
T 3thx_B 700 -AQIGSYVPAEEAT--------IG---------IVDGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILD 759 (918)
T ss_dssp -HHHTCCBSSSEEE--------EE---------CCSEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEE
T ss_pred -hhcCccccchhhh--------hh---------HHHHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEe
Confidence 0000000000000 00 01112334555433 345678999999999999999 8999999999
Q ss_pred CCCCCCCHHHHHHHH-HHHh----hcCcEEEEEecCHHHHHhhcCe
Q 007982 225 EPTNHLDLEACVWLE-ETLK----KFDRILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 225 EPt~~LD~~~~~~l~-~~l~----~~~~tviivsHd~~~~~~~~d~ 265 (582)
|||+|||+.....+. .++. +.+.|+|++||+++++ .+||+
T Consensus 760 EP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 760 ELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 999999998877665 3433 2478999999998765 45553
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=1e-18 Score=198.64 Aligned_cols=146 Identities=24% Similarity=0.255 Sum_probs=106.6
Q ss_pred eEEEEEEEEEec--CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEcCceeEEEechhhhhh
Q 007982 366 VLQFVEVTFGYT--PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRHNHLRIAQFHQHLAEK 442 (582)
Q Consensus 366 ~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~ 442 (582)
.|.+++...-.- ++..+++|+||+ |++++|+||||||||||||+|+|+.. |..|.+.......+++++|.+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--- 623 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--- 623 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh---
Confidence 466666632110 235689999998 99999999999999999999999874 677865422222344333311
Q ss_pred cCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCC
Q 007982 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEP---TNHLD 517 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEP---t~~LD 517 (582)
..+++.+.. ...+|+|+++++.+|+++ +.+|++|||||| |++||
T Consensus 624 ---------------------------~~~~~~d~l----~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 624 ---------------------------TRIGASDDL----AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp ---------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred ---------------------------ccCCHHHHH----HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 112221111 135799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHhcCceEEEEecCHHHHHhhc
Q 007982 518 IETI-DSLAEALNEWDGGLVLVSHDFRLINQVA 549 (582)
Q Consensus 518 ~~~~-~~l~~~l~~~~~tvi~vsHd~~~~~~~~ 549 (582)
..+. ..+.+.|.+.+.++|++|||.++.. +|
T Consensus 673 ~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 673 GVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9886 5788888887889999999998873 54
No 167
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=4.1e-19 Score=176.45 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=101.0
Q ss_pred CCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc-CceeEEEechhhhhhcCCcccHHHHHHhc
Q 007982 378 PDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-NHLRIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 378 ~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
+++.+|+|+||++.+|+++||+||||||||||+++|+|++ |.+... ....+++++|.. +....+..++....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3467999999999999999999999999999999999976 433211 122477777762 22334554443211
Q ss_pred ---C--CC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007982 457 ---Y--PG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEAL 528 (582)
Q Consensus 457 ---~--~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 528 (582)
+ .. .+.+.+.+.|+.+ .... ..++..||+||+||+.+ ++++.+|+++|||||....|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l--~~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI--VEGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH--HTTC-CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHH--HCCC-CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH--
Confidence 1 11 1234455666654 2222 23457899999999988 5888899999999998888764 211
Q ss_pred HhcCceEEEEecC-HHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHH
Q 007982 529 NEWDGGLVLVSHD-FRLINQVAHEIWVCENQAVTRWEGDIMDFKLHL 574 (582)
Q Consensus 529 ~~~~~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~ 574 (582)
-.+.+|+++||+ ......+++++ ++|. +.++..+..
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 136799999997 55555566555 5553 455555443
No 168
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.71 E-value=1.7e-17 Score=162.02 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=103.9
Q ss_pred ceeeEeeeE-EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHh-cC
Q 007982 380 NLIYKNLDF-GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIK-EY 457 (582)
Q Consensus 380 ~~~l~~vsl-~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~ 457 (582)
.+.|+++.+ .+.+|++++|+||||||||||++.|++...+..|.|.+.+... .... ....+.. .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~----------~~~~~~~~~~ 75 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDS----------IIRQAKQFNW 75 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHH----------HHHHHHHTTC
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHH----------HHHHHHHhcc
Confidence 456788877 7999999999999999999999999998877777765422100 0000 0000000 00
Q ss_pred CCCh--HHH---HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHH
Q 007982 458 PGNE--EEK---MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHL--DIETIDSLAEAL 528 (582)
Q Consensus 458 ~~~~--~~~---~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l 528 (582)
.... ... +......++ .. ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 76 DFEEYIEKKLIIIDALMKEKE-DQ----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp CCGGGBTTTEEEEECCC-----CT----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred hHHHHhhCCEEEEeccccccC-ce----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 0000 000 000000001 00 0112459999999888888888999 99999999888 998877777666
Q ss_pred Hh----cCceEEEEecCH--------HHHHhhcCEEEEEeCC
Q 007982 529 NE----WDGGLVLVSHDF--------RLINQVAHEIWVCENQ 558 (582)
Q Consensus 529 ~~----~~~tvi~vsHd~--------~~~~~~~d~i~~l~~G 558 (582)
++ .+.+||++||+. ..+.++||+|++|+..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 54 477999999999 5588999999999743
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.70 E-value=1.7e-17 Score=161.99 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=82.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.|++|++++|+||||||||||+++|+|++.|..|.....+ ..-++.... .........+...+.- ..+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~~~-~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNRGL-DPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHTTS-CHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHcCC-CHH---HH
Confidence 5899999999999999999999999996655322211111 011111110 0000001111111100 011 22
Q ss_pred HHhcCCCCccccCCCCCCChhHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHHH------------HHHHHH--
Q 007982 469 IGRFGLTGKAQVMPMKNLSDGQR-SRVVFAWLAYR-------QPHMLLLDEPTNHLDIET------------IDSLAE-- 526 (582)
Q Consensus 469 l~~~gl~~~~~~~~~~~LSgGqk-qrv~lAral~~-------~p~lLlLDEPt~~LD~~~------------~~~l~~-- 526 (582)
++.+.+ ....+.+++ +.+..++.++. +|++|+|||||+++|+.. ...+.+
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 222211 112344443 33555555555 999999999999999831 113333
Q ss_pred --HHHhcCceEEEEec----CHHHHHhhcCEEEEEeCC
Q 007982 527 --ALNEWDGGLVLVSH----DFRLINQVAHEIWVCENQ 558 (582)
Q Consensus 527 --~l~~~~~tvi~vsH----d~~~~~~~~d~i~~l~~G 558 (582)
..++.+.|||+||| +-..+..+||+++++++|
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 33445789999999 555599999999999865
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=3.6e-17 Score=161.81 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=94.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeE--EEeCCcEEEEECCCCCcHHHHHHHHh--cCCCCCCCceeeeeechHHHHHHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSEL--ELNYGRRYGLLGLNGCGKSTLLTAIG--EIEASDMSSLEAVISCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl--~i~~Ge~~~LvG~NGsGKSTLl~~l~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 147 (582)
++++++++..|.+ |+.+ + .|++|++++|+||||||||||+++|+ ++..+..+.. .+..............
T Consensus 6 ~~~~~~i~tg~~~---lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGV--FVTLEERARDLRREMA 79 (251)
T ss_dssp --CCCEECCSCTT---TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEE--EEESSSCHHHHHHHHH
T ss_pred ccccceeecCCHh---HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE--EEEccCCHHHHHHHHH
Confidence 4666677665543 3333 2 68999999999999999999999998 6523322221 1111111111111111
Q ss_pred HhccccCCCcchHHHHH--HHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 148 ILGAQEDGGGEQLERVY--ERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 148 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
.+++. ..... ..+...+......... . ..........+-++......+..-..+|++|+|||
T Consensus 80 ~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDe 143 (251)
T 2ehv_A 80 SFGWD-------FEKYEKEGKIAIVDGVSSVVGLP-------S--EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDS 143 (251)
T ss_dssp TTTCC-------HHHHHHTTSEEEEC----------------------------CCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HcCCC-------hHHHhhcCCEEEEEccccccccc-------c--ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEcc
Confidence 11110 00000 0000000000000000 0 00001112234455555555555568999999999
Q ss_pred CCCCCC-----HHHHHHHHHHHh---hcCcEEEEEecCHHHH---------Hhhc-CeEEEEeC
Q 007982 226 PTNHLD-----LEACVWLEETLK---KFDRILVVISHSQDFL---------NGVC-TNIIHMQN 271 (582)
Q Consensus 226 Pt~~LD-----~~~~~~l~~~l~---~~~~tviivsHd~~~~---------~~~~-d~i~~l~~ 271 (582)
||++|| +..+..+.++++ +.+.|||+|||+.+.+ ..+| |+|++|+.
T Consensus 144 p~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 144 IPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999997 666665666654 4588999999999998 6888 99999973
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.67 E-value=2e-18 Score=173.02 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=97.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHHHHHhc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKEAEILG 150 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 150 (582)
.++++++++. .+|+++| +++|++++|+||||||||||+++|+++.+++ .+.+ .+.+... +.+
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I----~~~g~~i------~~~- 67 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI----ITIEDPI------EYV- 67 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE----EEEESSC------CSC-
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE----EEcCCcc------eee-
Confidence 3556677653 5899999 8999999999999999999999999987664 3432 1111110 000
Q ss_pred cccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCC
Q 007982 151 AQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHL 230 (582)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~L 230 (582)
.+... .. +.. ..+|+.. ..| |++||+||..+|++|||||||
T Consensus 68 ~~~~~-~~-----------v~q-----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~--- 108 (261)
T 2eyu_A 68 FKHKK-SI-----------VNQ-----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR--- 108 (261)
T ss_dssp CCCSS-SE-----------EEE-----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---
T ss_pred cCCcc-ee-----------eeH-----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---
Confidence 00000 00 000 0233321 222 899999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 231 DLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 231 D~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
|+++...+.+.. ..+.+|++++|+.+ +..+|||+++|..
T Consensus 109 D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 109 DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 999887766654 34789999999988 5678999887753
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=7.1e-17 Score=157.61 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=81.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCC--CCCce-eeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS--DMSSL-EAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEAL 170 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (582)
-|++|++++|+||||||||||+++|++...+ ..+.. ...+.++......... ...+.... .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~--------------i~~~~~~~-~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER--------------IREIAQNR-GL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH--------------HHHHHHHT-TS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH--------------HHHHHHHc-CC
Confidence 5889999999999999999999999984332 21111 1122222111000000 00000000 01
Q ss_pred ChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHH-HHHHHHHHHhc-------CCCceeecCCCCCCCHH-------H-
Q 007982 171 DASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWR-MRIALARALFI-------NPTILLLDEPTNHLDLE-------A- 234 (582)
Q Consensus 171 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr-qRv~LAraL~~-------~P~lLlLDEPt~~LD~~-------~- 234 (582)
... .+++.+. ....++++++ +.+..+++++. +|++|+|||||++||+. .
T Consensus 86 ~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~ 150 (231)
T 4a74_A 86 DPD-------EVLKHIY--------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAE 150 (231)
T ss_dssp CHH-------HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHH
T ss_pred CHH-------HHhhcEE--------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhH
Confidence 110 1122211 1123344443 33556666655 99999999999999983 1
Q ss_pred ----HHHHHH----HHhhcCcEEEEEec----CHHHHHhhcCeEEEEeCC
Q 007982 235 ----CVWLEE----TLKKFDRILVVISH----SQDFLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ----~~~l~~----~l~~~~~tviivsH----d~~~~~~~~d~i~~l~~G 272 (582)
...+.+ +.++.+.|||+||| +-..+..+||++++|++|
T Consensus 151 r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 151 RQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 113333 33455889999999 555599999999999875
No 173
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=3e-19 Score=172.86 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=105.0
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCC---CChHHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYP---GNEEEKMR 466 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 466 (582)
..+|+++||+||||||||||+++|+|++.| .+++++|..........++.++....+. ..+.+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999999876 3666776542211122344443322221 12345678
Q ss_pred HHHHhcCCCCccccCCCCCCChhH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q 007982 467 AAIGRFGLTGKAQVMPMKNLSDGQ----RSRVVFAWLAYRQPHMLLLDEPTNH-------LDIETIDSLAEALNEW---- 531 (582)
Q Consensus 467 ~~l~~~gl~~~~~~~~~~~LSgGq----kqrv~lAral~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~---- 531 (582)
++++.+++..... +|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 8888888876554 4778999996 4788999999999999999999999 9998888888777653
Q ss_pred CceEEEEecCHH
Q 007982 532 DGGLVLVSHDFR 543 (582)
Q Consensus 532 ~~tvi~vsHd~~ 543 (582)
+.|+++++|+..
T Consensus 151 g~t~~~~~~~~~ 162 (211)
T 3asz_A 151 GRSLEGVVAQYL 162 (211)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 678999999853
No 174
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.66 E-value=3.4e-16 Score=146.72 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=76.4
Q ss_pred hccCCCCChhHHHHHHHHHHHhc----CCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEE
Q 007982 194 AKKTRDFSGGWRMRIALARALFI----NPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 194 ~~~~~~LSGGqrqRv~LAraL~~----~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~ 267 (582)
.+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++ +.++|+|||+... ..+||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCEEE
Confidence 45678999999999999999975 46999999999999999999999999876 4689999999765 57899998
Q ss_pred EE--eCCeEEEEcCChhHHH
Q 007982 268 HM--QNKQLKFYTGNFDQYV 285 (582)
Q Consensus 268 ~l--~~G~i~~~~g~~~~~~ 285 (582)
.+ .+|....+..+.+++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 65 4787666666665543
No 175
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.66 E-value=7.2e-16 Score=144.54 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCCCCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhcCEEEE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAYR----QPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLINQVAHEIWV 554 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~ 554 (582)
+++..||||||||++||++++. +|+++||||||++||+.+...+.+.|+++ +.++|+|||+...+ .+||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4568999999999999999974 46999999999999999999999999876 46899999998765 78999986
Q ss_pred E--eCCeEEEEcCCHHHHHHHHHH
Q 007982 555 C--ENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 555 l--~~G~i~~~~g~~~~~~~~~~~ 576 (582)
+ .+|.......+..++.+.+.+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~~~~ 162 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKILEE 162 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHHHHH
Confidence 5 588776677888887766544
No 176
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.66 E-value=1.5e-17 Score=189.09 Aligned_cols=145 Identities=21% Similarity=0.165 Sum_probs=101.5
Q ss_pred ceEEeeeEEEE---CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCCceeeeeechHHHHHHHHHHH
Q 007982 72 DIRIESLSVTF---HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-SDMSSLEAVISCDEERLKLEKEAE 147 (582)
Q Consensus 72 ~i~v~nls~~y---~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~ 147 (582)
.|++++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+ +.... .
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vpa~~---------~ 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VPAEE---------A 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BSSSE---------E
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce---eehhc---------c
Confidence 57777764333 346789999999 99999999999999999999998652 222211 00000 0
Q ss_pred HhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH--hcCCCceeecC
Q 007982 148 ILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL--FINPTILLLDE 225 (582)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~~P~lLlLDE 225 (582)
.++.. + .++..++..+ .....+|+|+++++.+|+++ +.+|+++||||
T Consensus 615 ~i~~v------------------~---------~i~~~~~~~d----~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDE 663 (765)
T 1ewq_A 615 HLPLF------------------D---------GIYTRIGASD----DLAGGKSTFMVEMEEVALILKEATENSLVLLDE 663 (765)
T ss_dssp EECCC------------------S---------EEEEECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred ceeeH------------------H---------HhhccCCHHH----HHHhcccHHHHHHHHHHHHHHhccCCCEEEEEC
Confidence 00000 0 0112233322 12345899999999999999 99999999999
Q ss_pred C---CCCCCHHHH-HHHHHHHhhcCcEEEEEecCHHHHHhhc
Q 007982 226 P---TNHLDLEAC-VWLEETLKKFDRILVVISHSQDFLNGVC 263 (582)
Q Consensus 226 P---t~~LD~~~~-~~l~~~l~~~~~tviivsHd~~~~~~~~ 263 (582)
| |++||+.+. ..+.+.|.+.+.++|++||+.++.. +|
T Consensus 664 pgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 664 VGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9 999999887 4688888877889999999998864 44
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=1.9e-16 Score=154.61 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=101.8
Q ss_pred eeeeEeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH
Q 007982 85 HDLIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV 163 (582)
Q Consensus 85 ~~il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (582)
...|+++.+ .+++|++++|+||||||||||++.|++...+..+.+. .+........+......+..........
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI-YVTTEESRDSIIRQAKQFNWDFEEYIEK---- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE-EEESSSCHHHHHHHHHHTTCCCGGGBTT----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE-EEEcccCHHHHHHHHHHhcchHHHHhhC----
Confidence 456788887 7999999999999999999999999865443322211 1111111111111111111100000000
Q ss_pred HHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCC--CHHHHHHHH
Q 007982 164 YERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHL--DLEACVWLE 239 (582)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~L--D~~~~~~l~ 239 (582)
.+..++. ....++ .. . .....|.++.++...+.+...+|+ +||+||||+.+ |+.....+.
T Consensus 84 --~~~~~~~---------~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 84 --KLIIIDA---------LMKEKE-DQ-W---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp --TEEEEEC---------CC-----CT-T---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred --CEEEEec---------cccccC-ce-e---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 0000000 000000 00 0 123459999999988888888999 99999999888 988777777
Q ss_pred HHHhh----cCcEEEEEecCH--------HHHHhhcCeEEEEeCCe
Q 007982 240 ETLKK----FDRILVVISHSQ--------DFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 240 ~~l~~----~~~tviivsHd~--------~~~~~~~d~i~~l~~G~ 273 (582)
+.|++ .+.|||++||+. ..+..+||+|++|+...
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 76654 478999999999 55899999999998643
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=3.8e-17 Score=157.26 Aligned_cols=162 Identities=18% Similarity=0.179 Sum_probs=96.6
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC-----CCCCcEEEEcC------ceeEEE
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL-----VPLDGMVRRHN------HLRIAQ 434 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~-----~p~~G~i~~~~------~~~~~~ 434 (582)
+|+++|++|.|+ ..++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+ ...+--
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 578999999996 357777 889999999999999999999999999998 78888764321 111100
Q ss_pred echhhhhhcCC------cccHHHHHHh--c-----------CCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHH-
Q 007982 435 FHQHLAEKLDM------DMSALQYMIK--E-----------YPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR- 493 (582)
Q Consensus 435 ~~q~~~~~~~~------~~~~~~~~~~--~-----------~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr- 493 (582)
.+......... ......++.. . .+.. ....+..++..+++.......++..+|+||+||
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~ 158 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQ 158 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHH
Confidence 00000000000 0000011100 0 0111 223456677778876543234567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
+..+++++.+|.++++|||||++|..++..+.+.|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999988764
No 179
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.64 E-value=2.4e-17 Score=163.61 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=84.8
Q ss_pred CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC----CceeeeeechHHHHHHHHHHHHhccccCCCcc
Q 007982 83 HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM----SSLEAVISCDEERLKLEKEAEILGAQEDGGGE 158 (582)
Q Consensus 83 ~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (582)
+++.+|+|+||++++|+++||+||||||||||+++|+++..... ...-+.+..+. . . ....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~---------~----~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--F---------Y----KVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--G---------B----CCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--C---------c----cccC
Confidence 56789999999999999999999999999999999987542100 00000111110 0 0 0000
Q ss_pred hHHHHHHHHH--cCC--hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHH
Q 007982 159 QLERVYERLE--ALD--ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 159 ~~~~~~~~l~--~~~--~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~ 234 (582)
..+.+..... .++ .......+.+.|+.+. ....+++..||+||+||+++ ++++.+|+++|||||...+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 0010100000 000 0011123344444331 12356788999999999988 6888999999999999888764
Q ss_pred HHHHHHHHhhcCcEEEEEecCH-HHHHhhcCeEEEEeCC
Q 007982 235 CVWLEETLKKFDRILVVISHSQ-DFLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ~~~l~~~l~~~~~tviivsHd~-~~~~~~~d~i~~l~~G 272 (582)
+.+ -.+.+|+++||+. .....+++++ ++|
T Consensus 150 ---l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 150 ---IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp ---HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred ---HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 211 1377999999974 4444555545 555
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=2e-18 Score=176.78 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=74.7
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC-CCCCCcEEEEcC--------ceeEEEechhhh
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD-LVPLDGMVRRHN--------HLRIAQFHQHLA 440 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl-~~p~~G~i~~~~--------~~~~~~~~q~~~ 440 (582)
.||++.|+ ++.++++++|+| +|+||||||||||++.|+|. +.|++| |...+ ...+++..|...
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 47888896 467999999998 99999999999999999998 888888 53221 112344444321
Q ss_pred hhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC-CCHH
Q 007982 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNH-LDIE 519 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~-LD~~ 519 (582)
.....++++...........+..+.++.. +.... ...+.++|||||||+.+||+++ +|++||||++ ||+.
T Consensus 74 --~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 --VKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred --cccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 11222222211110000000111111111 11111 2345789999999999999886 9999999985 9998
Q ss_pred HHHHHHHHHHhcCceEEEEecCHH
Q 007982 520 TIDSLAEALNEWDGGLVLVSHDFR 543 (582)
Q Consensus 520 ~~~~l~~~l~~~~~tvi~vsHd~~ 543 (582)
..+.+.++-...+.++|+++||+.
T Consensus 145 ~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 DVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCC
Confidence 863333322223568899999973
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1e-16 Score=154.25 Aligned_cols=166 Identities=12% Similarity=0.112 Sum_probs=97.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC-----CCCCCcee--ee---------eec
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE-----ASDMSSLE--AV---------ISC 135 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~-----~~~~~~~~--~~---------i~~ 135 (582)
+|+++|+++.|+ ..++++ |.+.+|.+++|+|+||||||||++.|.|.. .++.+... +. +..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 589999999997 467777 899999999999999999999999999876 33322211 00 000
Q ss_pred hHHH---------HHHHHHHHHhccccCCC-c-chHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH
Q 007982 136 DEER---------LKLEKEAEILGAQEDGG-G-EQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW 204 (582)
Q Consensus 136 ~~~~---------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 204 (582)
.+.. .........+....... . ..... +. .........+.+++...+++......++..+|+||
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d----~~-~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMD----IR-HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEE----TT-SCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEE----CC-CCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 0000 00000000000000000 0 00000 00 00111223455667777776443456788999999
Q ss_pred HHH-HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 205 RMR-IALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 205 rqR-v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+|| +..+++++.+|.++++|||||++|..++..+.+.|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 999 89999999999999999999999999999999988764
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=2.9e-18 Score=163.51 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=91.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee-eeechHHHHHHHHHHHHhcc--ccCCCcchHHHHHHHHHcCChhH
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA-VISCDEERLKLEKEAEILGA--QEDGGGEQLERVYERLEALDAST 174 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 174 (582)
|++++|+||||||||||+++|+++.. +.| +.. ..... ... .....+++ +......
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~--~~~--~~~~~ig~~~~~~~g~~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE--EVR--QGGRRIGFDVVTLSGTR---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC--EEE--TTSSEEEEEEEETTSCE----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc--hhH--hhhceEEEEEEecccce----------------
Confidence 78999999999999999999998876 444 211 11110 000 00001111 0000000
Q ss_pred HHHHHHHHHHhCCCCh------hhhhccCCCCChhHHHHH-HHHH---HHhcCCCceeecC--CCCCCCHHHHHHHHHHH
Q 007982 175 AEKRAAEILYGLGFNK------TMQAKKTRDFSGGWRMRI-ALAR---ALFINPTILLLDE--PTNHLDLEACVWLEETL 242 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv-~LAr---aL~~~P~lLlLDE--Pt~~LD~~~~~~l~~~l 242 (582)
..+..+++.. ....++...+|+|||+++ +|++ |++.+|++||||| ||+.+|+...+.|.+++
T Consensus 59 ------~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 59 ------GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ------EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ------ehhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0112222221 123455667999999998 4455 6899999999999 99999999999999999
Q ss_pred hhcCcEEE---EEecCH--HHHHhhcCeEEEEeCCeEEE
Q 007982 243 KKFDRILV---VISHSQ--DFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 243 ~~~~~tvi---ivsHd~--~~~~~~~d~i~~l~~G~i~~ 276 (582)
+.+..+|| .||||. .|++++| .+.+|+|..
T Consensus 133 ~~~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~ 167 (189)
T 2i3b_A 133 STPGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFN 167 (189)
T ss_dssp HCSSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEE
T ss_pred hCCCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEE
Confidence 87654442 456987 5555554 456677654
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.62 E-value=9.8e-17 Score=183.43 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=93.0
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
+..+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........++++.+.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i------------------- 653 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI------------------- 653 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-------------------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-------------------
Confidence 35689999999 9999999999999999999999999743 22332111111122222221
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHHh-cC
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS----LAEALNE-WD 532 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~----l~~~l~~-~~ 532 (582)
+.+++..+... ...+++|+++++ ++.+...+.+|++|||||||+|+|+..... +.+.+.+ .+
T Consensus 654 -----------~~~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g 720 (800)
T 1wb9_A 654 -----------FTRVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIK 720 (800)
T ss_dssp -----------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTC
T ss_pred -----------HhhCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccC
Confidence 11122211111 123467777664 555555689999999999988888755443 3444444 47
Q ss_pred ceEEEEecCHHHHHhhcCEEEEEeCCeE
Q 007982 533 GGLVLVSHDFRLINQVAHEIWVCENQAV 560 (582)
Q Consensus 533 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i 560 (582)
.++|++|||.+++ .+||++..+.++++
T Consensus 721 ~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 721 ALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred CeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 8999999999876 58887655555544
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.61 E-value=3e-18 Score=175.44 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=72.5
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC-CCCCCCceeeeeechHHHHHHHHHHHHhcc--c
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI-EASDMSSLEAVISCDEERLKLEKEAEILGA--Q 152 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 152 (582)
.||+++|+++.++++++|+| +||||||||||||+++|.+. ..++.+ + ...+...........+.. +
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i----~~~g~~~~~t~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-I----SGAAEKIERTVQIEASTVEIE 70 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-c----ccCCcccCCcceEeeEEEEec
Confidence 58999999999999999998 99999999999999999876 444332 1 111111000000111111 1
Q ss_pred cCCC---cchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCC
Q 007982 153 EDGG---GEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNH 229 (582)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~ 229 (582)
.... ...++...... .... .++...+...+ ....++++.++|||||||+.+|||++ +|++||||++
T Consensus 71 ~~~~~~~ltv~Dt~g~~~-~~~~---~e~~~~l~~~l---~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGD-AINC---RDCFKTIISYI---DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp ---CCEEEEEEEEC---------------CTTHHHHH---HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred CCCcccCcchhhhhhhhh-hcCc---HHHHHHHHHHH---HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 1000 00000000000 0000 00001111111 11234678899999999999999986 9999999985
Q ss_pred -CCHHHHHHHHHHHhhcCcEEEEEecCHH
Q 007982 230 -LDLEACVWLEETLKKFDRILVVISHSQD 257 (582)
Q Consensus 230 -LD~~~~~~l~~~l~~~~~tviivsHd~~ 257 (582)
||+...+.+.++-.+.+.++|+++||+.
T Consensus 140 ~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 9998864433332223568889999963
No 185
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.61 E-value=5.8e-17 Score=169.23 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=94.8
Q ss_pred EEEEEEecC-CceeeEeeeE-------EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhh
Q 007982 370 VEVTFGYTP-DNLIYKNLDF-------GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLA 440 (582)
Q Consensus 370 ~~l~~~y~~-~~~~l~~vsl-------~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~ 440 (582)
.+++++|.+ ..+.|+++.+ .+.+|++++|+|||||||||||++|+|++.|+ .|.|..... .+.+.....
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed-~~e~~~~~~- 169 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED-PIEFVHESK- 169 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCS-
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC-cHHhhhhcc-
Confidence 355555532 2344555554 67888899999999999999999999999987 566542111 000000000
Q ss_pred hhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 441 EKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
. ..+... . .....++..+ +||++|.++|++||+|||| |.++
T Consensus 170 ------------------~------------~~v~q~-~-~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 170 ------------------K------------CLVNQR-E-VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------S------------SEEEEE-E-BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------c------------cceeee-e-eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 000000 0 0001223322 9999999999999999999 8888
Q ss_pred HHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEe
Q 007982 521 IDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 521 ~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
...+.++.. .|.+||+++|+.+.+ ..|||+++|.
T Consensus 211 ~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp HHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred HHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhc
Confidence 777666644 478999999999988 7889887764
No 186
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.60 E-value=3.7e-18 Score=171.95 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=78.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc--ccCC---CcchHHHHHHHHHcCChhH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA--QEDG---GGEQLERVYERLEALDAST 174 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~~~~ 174 (582)
.++|+||||||||||+|+|+|+..++.|.+ .+.+...........++. +... .....+++... .......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i----~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS----WNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc----ccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHH
Confidence 489999999999999999999887765432 111111000000000000 0000 00000000000 0000011
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEec
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISH 254 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsH 254 (582)
..+.+.+.+. ....+..+.+|||||||||++|||++. +++|||||.+||+.....+ ..|.+. .++|+|.|
T Consensus 79 ~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l-~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 79 CWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFM-KHLSKV-VNIIPVIA 148 (270)
T ss_dssp CSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHH-HHHHTT-SEEEEEET
T ss_pred HHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHH-HHHHhc-CcEEEEEe
Confidence 1112233332 223456778999999999999999886 9999999999999885544 445554 78888888
Q ss_pred CHHH
Q 007982 255 SQDF 258 (582)
Q Consensus 255 d~~~ 258 (582)
..+.
T Consensus 149 K~D~ 152 (270)
T 3sop_A 149 KADT 152 (270)
T ss_dssp TGGG
T ss_pred cccc
Confidence 7654
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=2.4e-15 Score=152.08 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=92.2
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC----ceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN----HLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
.+.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+...-. . ......+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34331100 112444432210 0 001111111001122344
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHH----hcCceE
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN--HLDIETI---DSLAEALN----EWDGGL 535 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~--~LD~~~~---~~l~~~l~----~~~~tv 535 (582)
...+++.+++.... ..++..||+||.+++ ++++.+|++|||||||+ ++|.... ..+.+.|. +.+.||
T Consensus 99 ~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 56678888886654 346689999998765 67888999999999999 9997433 44544443 457899
Q ss_pred EEEecCHHHHH
Q 007982 536 VLVSHDFRLIN 546 (582)
Q Consensus 536 i~vsHd~~~~~ 546 (582)
|++||+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999988763
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=3e-15 Score=151.34 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=85.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCC----------CCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASD----------MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVY 164 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (582)
|++|++++|+||||||||||++.|++..... .+.. ..+........+....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v-~~~~~e~~~~~~~~r~------------------ 87 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPV-IYLPAEDPPTAIHHRL------------------ 87 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCE-EEEESSSCHHHHHHHH------------------
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccE-EEEECCCCHHHHHHHH------------------
Confidence 7899999999999999999999998533221 0100 0111110000000000
Q ss_pred HHHH-cCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC--CCCHHHH---HHH
Q 007982 165 ERLE-ALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN--HLDLEAC---VWL 238 (582)
Q Consensus 165 ~~l~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~--~LD~~~~---~~l 238 (582)
..+. .+. .....++++.+++.+ ..++++..||+||.|++ ++++.+|++||+||||+ ++|.... ..+
T Consensus 88 ~~~g~~~~----~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 88 HALGAHLS----AEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp HHHHTTSC----HHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred HHHHhhcC----hhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 0111 011 122455667777754 35678999999997765 68888999999999999 9997433 455
Q ss_pred HHHH----hhcCcEEEEEecCHHHHH
Q 007982 239 EETL----KKFDRILVVISHSQDFLN 260 (582)
Q Consensus 239 ~~~l----~~~~~tviivsHd~~~~~ 260 (582)
++.| ++.+.|||+++|+.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCccc
Confidence 5544 345789999999987653
No 189
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.58 E-value=1.9e-15 Score=166.09 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.4
Q ss_pred ccCCCC-ChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHHhhcCeEEEE
Q 007982 195 KKTRDF-SGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 195 ~~~~~L-SGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~~~~d~i~~l 269 (582)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.+.|+++ +.|||+||||++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999998776 679999999999876 69999999
Q ss_pred eCC
Q 007982 270 QNK 272 (582)
Q Consensus 270 ~~G 272 (582)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.58 E-value=5.3e-15 Score=143.26 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=92.5
Q ss_pred eeEeeeE-EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCC
Q 007982 382 IYKNLDF-GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN 460 (582)
Q Consensus 382 ~l~~vsl-~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 460 (582)
.|+.+.. .|.+|++++|+||||||||||++.|++ . ..+.+. |+.... .. +
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~--------~i~~~~--~~----~------------ 58 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVA--------YVDTEG--GF----S------------ 58 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEE--------EEESSC--CC----C------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEE--------EEECCC--CC----C------------
Confidence 4555544 588999999999999999999999999 2 222222 221110 00 0
Q ss_pred hHHHHHHHHHhcCCCCc--cccCCCCCCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--------HHHH---
Q 007982 461 EEEKMRAAIGRFGLTGK--AQVMPMKNLSDGQ--RSRVVFAWLAYRQ-PHMLLLDEPTNHLDIET--------IDSL--- 524 (582)
Q Consensus 461 ~~~~~~~~l~~~gl~~~--~~~~~~~~LSgGq--kqrv~lAral~~~-p~lLlLDEPt~~LD~~~--------~~~l--- 524 (582)
..++.+.+..+++... .....+..+|+++ ++++..+++++.+ |++||+||||+.+|+.. ...+
T Consensus 59 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 59 -PERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp -HHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 0111122222222100 0001123455554 5678888899886 99999999999999732 1223
Q ss_pred -HHHHHhcCceEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 007982 525 -AEALNEWDGGLVLVSHDFR-------------LINQVAHEIWVCENQ 558 (582)
Q Consensus 525 -~~~l~~~~~tvi~vsHd~~-------------~~~~~~d~i~~l~~G 558 (582)
.++.++.+.+||+++|... .+.++||+|++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2333445789999999865 677899999999743
No 191
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.56 E-value=2.7e-16 Score=160.87 Aligned_cols=139 Identities=15% Similarity=0.041 Sum_probs=85.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCcccHHHHHH
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
+|++++|+||||||||||+++|+|+++|++|+|...+.. .+++++|... ..+..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 689999999999999999999999999999999875421 2344444321 122223333322
Q ss_pred hcCCCChHHHH-HHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 455 KEYPGNEEEKM-RAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH--MLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 455 ~~~~~~~~~~~-~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
... .... ..+++..|+.+... ..++..++||++|||+++.+|+ +|.|| |+++.+.. ..+...-+..
T Consensus 179 ~~~----~~~~d~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMK----ARGYDLLFVDTAGRLHTKH----NLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAV 247 (304)
T ss_dssp HHH----HHTCSEEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHH
T ss_pred HHH----hCCCCEEEecCCCCCCchH----HHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHc
Confidence 100 0000 00122334322111 2245556899999999999999 67777 66665432 2333333445
Q ss_pred CceEEEEecCHH
Q 007982 532 DGGLVLVSHDFR 543 (582)
Q Consensus 532 ~~tvi~vsHd~~ 543 (582)
+.|+|++||+..
T Consensus 248 ~~t~iivTh~d~ 259 (304)
T 1rj9_A 248 GLTGVIVTKLDG 259 (304)
T ss_dssp CCSEEEEECTTS
T ss_pred CCcEEEEECCcc
Confidence 789999999844
No 192
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.56 E-value=1.3e-17 Score=161.15 Aligned_cols=144 Identities=17% Similarity=0.086 Sum_probs=93.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDAST 174 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 174 (582)
.++|+++||+||||||||||+++|+++..+.. +.+..+... . ..............+ ..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i----~~v~~d~~~-----------~-~~~~~~~~~~~~~~~-~~~~~~ 65 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERV----ALLPMDHYY-----------K-DLGHLPLEERLRVNY-DHPDAF 65 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGE----EEEEGGGCB-----------C-CCTTSCHHHHHHSCT-TSGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecCccc-----------c-CcccccHHHhcCCCC-CChhhh
Confidence 46899999999999999999999998754311 111111100 0 000000000000000 001111
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChhHH----HHHHHHHHHhcCCCceeecCCCCC-------CCHHHHHHHHHHHh
Q 007982 175 AEKRAAEILYGLGFNKTMQAKKTRDFSGGWR----MRIALARALFINPTILLLDEPTNH-------LDLEACVWLEETLK 243 (582)
Q Consensus 175 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr----qRv~LAraL~~~P~lLlLDEPt~~-------LD~~~~~~l~~~l~ 243 (582)
...++.++++.+++... .++++.++|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.
T Consensus 66 ~~~~~~~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~ 144 (211)
T 3asz_A 66 DLALYLEHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLK 144 (211)
T ss_dssp CHHHHHHHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHH
Confidence 12345566666666543 4568899999974 788999999999999999999999 99988888888775
Q ss_pred hc----CcEEEEEecCH
Q 007982 244 KF----DRILVVISHSQ 256 (582)
Q Consensus 244 ~~----~~tviivsHd~ 256 (582)
+. +.|+++++|+.
T Consensus 145 r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 145 RDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHSCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 53 77999999984
No 193
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=9.7e-16 Score=175.22 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=95.7
Q ss_pred ceEEeeeEEEE-----CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CCCceeeeeechHHHHHHHHH
Q 007982 72 DIRIESLSVTF-----HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-DMSSLEAVISCDEERLKLEKE 145 (582)
Q Consensus 72 ~i~v~nls~~y-----~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 145 (582)
.|.+++...-. +++.+++|++|+ ++|++++|+||||||||||||+|+|+... ..+.. +....
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~---vpa~~-------- 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY---VPAQK-------- 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC---BSSSE--------
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc---cchhc--------
Confidence 46666543211 456799999999 99999999999999999999999875321 11100 00000
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
..+...+ .++..++..+. .....+.+|+++++ ++.+..++.+|++|||||
T Consensus 645 -~~i~~~~---------------------------~i~~~~~~~d~-l~~~~stf~~e~~~-~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 645 -VEIGPID---------------------------RIFTRVGAADD-LASGRSTFMVEMTE-TANILHNATEYSLVLMDE 694 (800)
T ss_dssp -EEECCCC---------------------------EEEEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEES
T ss_pred -ccceeHH---------------------------HHHhhCCHHHH-HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEEC
Confidence 0000000 00111222111 11234567777765 444455689999999999
Q ss_pred CCCCCCHHHHH----HHHHHHhh-cCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 226 PTNHLDLEACV----WLEETLKK-FDRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 226 Pt~~LD~~~~~----~l~~~l~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
||+|+|+.... .+.+.+.+ .+.++|++||+.++. .+||++..+.++++
T Consensus 695 p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 695 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 98888875443 34445555 478999999999875 48988766655554
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.55 E-value=7.3e-15 Score=142.26 Aligned_cols=149 Identities=19% Similarity=0.093 Sum_probs=91.4
Q ss_pred eeEeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 87 LIVDSEL-ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 87 il~~vsl-~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.|+.+.. .|++|++++|+||||||||||++.|++ ..... .+.++... ... ...+..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~----v~~i~~~~--------------~~~---~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK----VAYVDTEG--------------GFS---PERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE----EEEEESSC--------------CCC---HHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc----EEEEECCC--------------CCC---HHHHHH
Confidence 4555544 588999999999999999999999988 22211 11111100 000 000000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhH--HHHHHHHHHHhcC-CCceeecCCCCCCCHHH--------
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGW--RMRIALARALFIN-PTILLLDEPTNHLDLEA-------- 234 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq--rqRv~LAraL~~~-P~lLlLDEPt~~LD~~~-------- 234 (582)
........ ..++++. -.+..+|+++ +++++.+++++.+ |++||+||||+.+|+..
T Consensus 65 ~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 65 MAETRGLN-----PEEALSR---------FILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHTTTCC-----HHHHHHH---------EEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHhcCCC-----hHHHhhc---------EEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 00000000 0011111 1234556665 5688888899986 99999999999999732
Q ss_pred HHHH----HHHHhhcCcEEEEEecCHH-------------HHHhhcCeEEEEeCC
Q 007982 235 CVWL----EETLKKFDRILVVISHSQD-------------FLNGVCTNIIHMQNK 272 (582)
Q Consensus 235 ~~~l----~~~l~~~~~tviivsHd~~-------------~~~~~~d~i~~l~~G 272 (582)
...+ .++.++++.|+|+++|... .+..+||++++|+..
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 1223 3333455889999999865 678899999999854
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=2.8e-16 Score=167.22 Aligned_cols=159 Identities=11% Similarity=0.088 Sum_probs=89.0
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE--EEEc--C---ceeEEEech
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM--VRRH--N---HLRIAQFHQ 437 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~--i~~~--~---~~~~~~~~q 437 (582)
.+|.++|+++.|++ +.++++++|+| +|+|+||||||||+++|+|+..|..|. +... . ...++++.|
T Consensus 10 ~~l~~~~l~~~y~~-~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTTT-TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeECC-EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 56899999999964 67999999998 999999999999999999998765441 1110 0 112445544
Q ss_pred hhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCC---EEEEeCCC-
Q 007982 438 HLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPH---MLLLDEPT- 513 (582)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~---lLlLDEPt- 513 (582)
... +....++++.............++.+.+.+ . ..++.+++||++|||+++.+|+ +|++||||
T Consensus 83 ~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i------~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 83 EGG--VQLLLTIVDTPGFGDAVDNSNCWQPVIDYI------D----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHHH------H----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred cCC--cccceeeeechhhhhhccchhhHHHHHHHH------H----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 321 112223322221110000001111111111 0 1355677789999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 007982 514 NHLDIETIDSLAEALNEWDGGLVLVSHDFRL 544 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 544 (582)
++||+..... .+.|.. +..||+|.|-.+.
T Consensus 151 ~~L~~~d~~~-lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 151 HGLKPLDIEF-MKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CSCCHHHHHH-HHHHTT-TSEEEEEEESTTS
T ss_pred cCCCHHHHHH-HHHHhc-cCcEEEEEEcccC
Confidence 6999887533 344443 5677777776553
No 196
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.53 E-value=2.5e-16 Score=175.97 Aligned_cols=171 Identities=15% Similarity=0.262 Sum_probs=89.6
Q ss_pred CCeEEEEEEEEEecCC-ceeeEee----------eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEEEcCce-
Q 007982 364 PPVLQFVEVTFGYTPD-NLIYKNL----------DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVRRHNHL- 430 (582)
Q Consensus 364 ~~~l~~~~l~~~y~~~-~~~l~~v----------sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~~~~~~- 430 (582)
++.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|++.+..
T Consensus 8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 3468899999999632 2344433 355543 999999999999999999999989 79998765421
Q ss_pred -------------eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHH
Q 007982 431 -------------RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFA 497 (582)
Q Consensus 431 -------------~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lA 497 (582)
.++|++|... +....++.+++ ......++.... .+| ++++.++
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i------------~~~~~~~~~~~~-------~~s---~~~i~l~ 140 (608)
T 3szr_A 85 KLKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEI------------NKAQNAIAGEGM-------GIS---HELITLE 140 (608)
T ss_dssp EEEECSSSSCCEEEESCC---CC--CCCHHHHHTTH------------HHHHHHHHCSSS-------CCC---SCCEEEE
T ss_pred EEecCCccccceeEEeeeccccc--CCCHHHHHHHH------------HHHHHHhcCCcc-------ccc---hHHHHHH
Confidence 2344444321 11122222221 112222221110 011 1122233
Q ss_pred HHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHH--------Hhh----cCEEEE
Q 007982 498 WLAYRQPHMLLLDEP------TNHLDIETIDSLAEALNEW-----DGGLVLVSHDFRLI--------NQV----AHEIWV 554 (582)
Q Consensus 498 ral~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~~--------~~~----~d~i~~ 554 (582)
.+....|+++|+||| |++||+.....+.+++.++ +.+++++|||++.+ ..+ +..|+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 333458999999999 9999999999999998885 34688999997633 332 245777
Q ss_pred EeCCeEE
Q 007982 555 CENQAVT 561 (582)
Q Consensus 555 l~~G~i~ 561 (582)
+.++.++
T Consensus 221 lTK~Dlv 227 (608)
T 3szr_A 221 LTKPDLV 227 (608)
T ss_dssp EECGGGS
T ss_pred ecchhhc
Confidence 7766543
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.53 E-value=4.1e-16 Score=162.78 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred eeeEEEECC--eeeeEeeeE-------EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHH
Q 007982 76 ESLSVTFHG--HDLIVDSEL-------ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKE 145 (582)
Q Consensus 76 ~nls~~y~~--~~il~~vsl-------~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 145 (582)
.+++++|.. ...|+++.+ .+.+|++++|+||||||||||+++|+++.+++ .+.+ +.... ..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i---~t~ed-~~----- 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI---LTIED-PI----- 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE---EEEES-SC-----
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE---EEccC-cH-----
Confidence 456666632 344566655 67789999999999999999999999877654 2221 11100 00
Q ss_pred HHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecC
Q 007982 146 AEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDE 225 (582)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDE 225 (582)
.+....... .+... ......++-.+ +||+||..+|++||+||
T Consensus 163 ----e~~~~~~~~----------------------------~v~q~--~~~~~~~~~~~----~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 163 ----EFVHESKKC----------------------------LVNQR--EVHRDTLGFSE----ALRSALREDPDIILVGE 204 (356)
T ss_dssp ----CSCCCCSSS----------------------------EEEEE--EBTTTBSCHHH----HHHHHTTSCCSEEEESC
T ss_pred ----Hhhhhcccc----------------------------ceeee--eeccccCCHHH----HHHHHhhhCcCEEecCC
Confidence 000000000 00000 00001122222 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 226 PTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 226 Pt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
|| |.++...+.+... .|.++|+++|+.+.+ ..|||++.|..
T Consensus 205 p~---d~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 205 MR---DLETIRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp CC---SHHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred CC---CHHHHHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 99 8888777666543 488999999999988 78999988844
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=1.9e-15 Score=157.69 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=88.3
Q ss_pred eeEee-eEEEecCCEEEEEcCCCCcHHHHHHHHhCCC--CCCC----cE-EEEcCceeEEEechhhhhhcCCcccHHHHH
Q 007982 382 IYKNL-DFGVDLDSRVALVGPNGAGKSTLLKLMTGDL--VPLD----GM-VRRHNHLRIAQFHQHLAEKLDMDMSALQYM 453 (582)
Q Consensus 382 ~l~~v-sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 453 (582)
.|+.+ ++.|.+|++++|+||||||||||++.|++.. +|++ |. |...+... +.++. ..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~~~~~-----------i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FRPER-----------IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--CCHHH-----------HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--CCHHH-----------HHHH
Confidence 34444 6789999999999999999999999999998 6666 45 44433210 00000 0111
Q ss_pred HhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------
Q 007982 454 IKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY-------RQPHMLLLDEPTNHLDIET------ 520 (582)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-------~~p~lLlLDEPt~~LD~~~------ 520 (582)
...+. .... .+++.+-+. .. .-|++++|++.++++++ .+|++||+||||+++|+..
T Consensus 186 ~q~~~-~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~ 254 (349)
T 1pzn_A 186 AQNRG-LDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 254 (349)
T ss_dssp HHTTT-CCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred HHHcC-CCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence 11111 1111 222222110 11 12678999999999998 6899999999999999852
Q ss_pred ------HHHHHHHH----HhcCceEEEEecCHHHHHhhcCEEEEEeCCe
Q 007982 521 ------IDSLAEAL----NEWDGGLVLVSHDFRLINQVAHEIWVCENQA 559 (582)
Q Consensus 521 ------~~~l~~~l----~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 559 (582)
...+...| ++++.|||+++|+.......++...+...|+
T Consensus 255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~ 303 (349)
T 1pzn_A 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH 303 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence 23333333 3457899999999876544333334444444
No 199
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.49 E-value=7.6e-14 Score=146.96 Aligned_cols=75 Identities=32% Similarity=0.494 Sum_probs=68.1
Q ss_pred ccCCCCChhHHHHH------HHHHHHhcC-CCceeecCCCCCCCHHHHHHHHHHHhhcC--cEEEEEecCHHHHHhhcCe
Q 007982 195 KKTRDFSGGWRMRI------ALARALFIN-PTILLLDEPTNHLDLEACVWLEETLKKFD--RILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 195 ~~~~~LSGGqrqRv------~LAraL~~~-P~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tviivsHd~~~~~~~~d~ 265 (582)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 99999999999999999999999998863 58999999987 5789999
Q ss_pred EEEEe
Q 007982 266 IIHMQ 270 (582)
Q Consensus 266 i~~l~ 270 (582)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.48 E-value=3.4e-15 Score=157.10 Aligned_cols=126 Identities=18% Similarity=0.149 Sum_probs=86.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCC-CcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPL-DGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGN 460 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 460 (582)
+|++++ +.+|++++|+||||||||||+++|+|++.|+ +|.|...+.. +.+.. ..... ..+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~~---~~~~~-----------~v~Q- 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVF---KHKKS-----------IVNQ- 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSCC---CCSSS-----------EEEE-
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhhhh---ccCce-----------EEEe-
Confidence 566665 7899999999999999999999999999997 8998643211 00000 00000 0000
Q ss_pred hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q 007982 461 EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSH 540 (582)
Q Consensus 461 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 540 (582)
..+|+. + ..| +.+|+++|..+|++|++|||| |+++...+.+.. ..+.+|+.++|
T Consensus 189 ---------~~~g~~------~-~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H 242 (372)
T 2ewv_A 189 ---------REVGED------T-KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH 242 (372)
T ss_dssp ---------EEBTTT------B-SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred ---------eecCCC------H-HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence 013332 1 245 469999999999999999999 888766555544 34678999999
Q ss_pred CHHHHHhhcCEE
Q 007982 541 DFRLINQVAHEI 552 (582)
Q Consensus 541 d~~~~~~~~d~i 552 (582)
+.+ +..+|||+
T Consensus 243 ~~~-~~~~~~rl 253 (372)
T 2ewv_A 243 TNT-AIDTIHRI 253 (372)
T ss_dssp CCS-HHHHHHHH
T ss_pred cch-HHHHHHHH
Confidence 966 55666665
No 201
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.47 E-value=2e-14 Score=149.97 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=86.1
Q ss_pred eeeEee-eEEEeCCcEEEEECCCCCcHHHHHHHHhcCC--CCCCCceeee-eechHHHHHHHHHHHHhccccCCCcchHH
Q 007982 86 DLIVDS-ELELNYGRRYGLLGLNGCGKSTLLTAIGEIE--ASDMSSLEAV-ISCDEERLKLEKEAEILGAQEDGGGEQLE 161 (582)
Q Consensus 86 ~il~~v-sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~--~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (582)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +++.+...+. +.++............+.. ..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q-~~------- 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ-NR------- 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH-TT-------
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHH-Hc-------
Confidence 446655 6899999999999999999999999999765 4433211111 2322211100000000000 00
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-------cCCCceeecCCCCCCCHHH
Q 007982 162 RVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-------INPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-------~~P~lLlLDEPt~~LD~~~ 234 (582)
.++.. .+++.+-+. .. .-|.+++|++.++++++ .+|++||+||||++||+..
T Consensus 190 -------~~~~~-------~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~ 248 (349)
T 1pzn_A 190 -------GLDPD-------EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 248 (349)
T ss_dssp -------TCCHH-------HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHC
T ss_pred -------CCCHH-------HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhh
Confidence 01100 111111110 00 12577888888888888 6899999999999999852
Q ss_pred ------------HHHHHHHH----hhcCcEEEEEecCHHHHHhhcCeEEEEeCCeE
Q 007982 235 ------------CVWLEETL----KKFDRILVVISHSQDFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 235 ------------~~~l~~~l----~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 274 (582)
...+...| ++++.|||+++|........++.......|++
T Consensus 249 ~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 249 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 23333333 34578999999997765544444455555554
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.46 E-value=7.9e-15 Score=142.97 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=88.4
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCce-------eEEEechhhhhhcCCcccHHHHHHhcC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNHL-------RIAQFHQHLAEKLDMDMSALQYMIKEY 457 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~ 457 (582)
.-..++|++++|+||||||||||+++|+|+++| ..|.|...+.. .++|++|...
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~----------------- 72 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD----------------- 72 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH-----------------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH-----------------
Confidence 345789999999999999999999999999986 67777654321 1223332211
Q ss_pred CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEE
Q 007982 458 PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVL 537 (582)
Q Consensus 458 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~ 537 (582)
........-.+..... . ...+.|-.++. +..++..++++||| ||+.+...+.+.+. .+.+|++
T Consensus 73 ------~f~~~~~~~~f~E~~~-~-~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i 135 (219)
T 1s96_A 73 ------EFKEMISRDAFLEHAE-V-FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI 135 (219)
T ss_dssp ------HHHHHHHTTCEEEEEE-E-TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred ------HHHHHHhcCHHHHHHH-H-HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence 0111110000000000 0 00111111222 34455678999999 99999999999887 3679999
Q ss_pred EecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 538 VSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 538 vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
+|||++.+.+ |+ +..| .++.+++...+.+
T Consensus 136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRMAQ 164 (219)
T ss_dssp ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHHHH
T ss_pred ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHHHH
Confidence 9999998865 32 5555 5677777766554
No 203
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.46 E-value=1.6e-13 Score=144.37 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCCCCCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhcCE
Q 007982 481 MPMKNLSDGQRSRV------VFAWLAYRQ-PHMLLLDEPTNHLDIETIDSLAEALNEWD--GGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 481 ~~~~~LSgGqkqrv------~lAral~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~~~~~~d~ 551 (582)
.|+..|||||+||| ++|++++.+ |++|||||||++||+..+..+.+.|.++. .+||+||||++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46679999999988 557888999 99999999999999999999999998863 58999999987 5689999
Q ss_pred EEEEe
Q 007982 552 IWVCE 556 (582)
Q Consensus 552 i~~l~ 556 (582)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.45 E-value=5.4e-15 Score=157.32 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=85.7
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhcc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGA 151 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 151 (582)
+|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+..+. +.+....... . ....+..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~--~~~~~~~~~t-~--~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY--PGPSHRIKKT-V--QVEQSKV 79 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC--CSCC-----C-C--EEEEEEC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC--CCcccCCccc-e--eeeeEEE
Confidence 689999999999999999999998 999999999999999999876532211 0000000000 0 0000000
Q ss_pred --ccCC---CcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC---ceee
Q 007982 152 --QEDG---GGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT---ILLL 223 (582)
Q Consensus 152 --~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~---lLlL 223 (582)
+... ....++++..... .........+.+.+. ..++.+++||++|||+++.+|+ +|++
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp C------CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred EEecCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 0000 0000000000000 000000011111111 1355677889999999999999 9999
Q ss_pred cCCC-CCCCHHHHHHHHHHHhhcCcEEEEEecCHHH
Q 007982 224 DEPT-NHLDLEACVWLEETLKKFDRILVVISHSQDF 258 (582)
Q Consensus 224 DEPt-~~LD~~~~~~l~~~l~~~~~tviivsHd~~~ 258 (582)
|||| ++||+....++.. |.. +.++|+|.|..|.
T Consensus 146 dePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 146 IAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred ecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 9999 6999988655544 443 6778888776553
No 205
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.43 E-value=5.2e-15 Score=155.21 Aligned_cols=171 Identities=16% Similarity=0.163 Sum_probs=108.4
Q ss_pred EEEEEEEE---ecC-Cceee---------EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEE
Q 007982 368 QFVEVTFG---YTP-DNLIY---------KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQ 434 (582)
Q Consensus 368 ~~~~l~~~---y~~-~~~~l---------~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~ 434 (582)
++++++|+ |++ +..+| +++||.|.+|++++|+||||||||||+++|+|+++|++|.|...+...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 67788887 742 12344 89999999999999999999999999999999999999999886531110
Q ss_pred echhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 007982 435 FHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 435 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~ 514 (582)
...+ ..... ..+. + .+...++++..++..|+.++..+|+.+++|||+.
T Consensus 216 ~~~~-~~~v~----------~v~~--------------------q-~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 216 LPDH-PNHVH----------LFYP--------------------S-EAKEEENAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp CTTC-SSEEE----------EECC-------------------------------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred cccc-CCEEE----------Eeec--------------------C-ccccccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 0000 00000 0000 0 0000124555688999999999999999999986
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 515 HLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 515 ~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
.+..+ +.+.+..-..|++.++|+.. +...++|+..+..+.......++......+.+
T Consensus 264 ---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~ 320 (361)
T 2gza_A 264 ---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYL 320 (361)
T ss_dssp ---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHH
T ss_pred ---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 22222 33333332347889999965 66788888877665421113444555555544
No 206
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=7.4e-13 Score=130.08 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=77.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC--CCCC-----CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG--DLVP-----LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
.|.+|++++|+||||||||||++.|++ +++| ..|.+....... + .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------~--~--------------- 71 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------F--R--------------- 71 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------C--C---------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------c--C---------------
Confidence 488999999999999999999999999 5655 233333322100 0 0
Q ss_pred HHHHHHHHHhcCCCC-----ccccCCCCCCChhHHHHH-HHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----H
Q 007982 462 EEKMRAAIGRFGLTG-----KAQVMPMKNLSDGQRSRV-VFAWLAY--RQPHMLLLDEPTNHLDIE-------T-----I 521 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~-----~~~~~~~~~LSgGqkqrv-~lAral~--~~p~lLlLDEPt~~LD~~-------~-----~ 521 (582)
..++.+.+..+|+.. ... .....+..+...+ .-+..++ .+|++|++||||+.+|+. + .
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~ 149 (243)
T 1n0w_A 72 PERLLAVAERYGLSGSDVLDNVA--YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHL 149 (243)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTEE--EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhhCeE--EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHH
Confidence 001111112222211 000 0123455554332 2233333 589999999999999975 2 2
Q ss_pred HHHHHHH----HhcCceEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q 007982 522 DSLAEAL----NEWDGGLVLVSHDFRLINQ-------------------VAHEIWVCENQ 558 (582)
Q Consensus 522 ~~l~~~l----~~~~~tvi~vsHd~~~~~~-------------------~~d~i~~l~~G 558 (582)
..+...| ++.+.|||+++|....... +||.+++|+.+
T Consensus 150 ~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 150 ARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2333333 3457899999997665433 89999999854
No 207
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.41 E-value=1.8e-13 Score=139.83 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH------HHHHHHHHHHHhccccCCC-cchHHHHHHHHHc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE------ERLKLEKEAEILGAQEDGG-GEQLERVYERLEA 169 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 169 (582)
+|++++|+||||||||||+++|+++..++.+.+.. ...+. ...........+.+..+.. ......+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l-~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF-CAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE-ECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE-EeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999988877654321 11111 1111111111222211111 1111122222210
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC--ceeecCCCCCCCHHHHHHHHHHHhhcCc
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT--ILLLDEPTNHLDLEACVWLEETLKKFDR 247 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~--lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 247 (582)
......-..+++..|..+. ..+. ++...+||++||||++.+|+ +|.|| |+++.+.. ..+.++-+..+.
T Consensus 180 ---~~~~~~d~~llDt~G~~~~-~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~~~~~~ 249 (304)
T 1rj9_A 180 ---MKARGYDLLFVDTAGRLHT-KHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFHEAVGL 249 (304)
T ss_dssp ---HHHHTCSEEEECCCCCCTT-CHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHHHHHCC
T ss_pred ---HHhCCCCEEEecCCCCCCc-hHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHHHHcCC
Confidence 0000000012233444321 1223 34455899999999999999 67777 66665432 333444445588
Q ss_pred EEEEEecCH
Q 007982 248 ILVVISHSQ 256 (582)
Q Consensus 248 tviivsHd~ 256 (582)
|+|++||+.
T Consensus 250 t~iivTh~d 258 (304)
T 1rj9_A 250 TGVIVTKLD 258 (304)
T ss_dssp SEEEEECTT
T ss_pred cEEEEECCc
Confidence 999999983
No 208
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.40 E-value=4.9e-13 Score=143.52 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.8
Q ss_pred ccCCCCChhHHHHHHHHHHHh----cCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecCHHHHHhhcCeEE
Q 007982 195 KKTRDFSGGWRMRIALARALF----INPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd~~~~~~~~d~i~ 267 (582)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.++|+++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345569999999999999999 589999999999999999999999999876 35999999997664 5799999
Q ss_pred EEe
Q 007982 268 HMQ 270 (582)
Q Consensus 268 ~l~ 270 (582)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 209
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.38 E-value=7.1e-13 Score=142.26 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecCHHHHHhhcCEEE
Q 007982 481 MPMKNLSDGQRSRVVFAWLAY----RQPHMLLLDEPTNHLDIETIDSLAEALNEWD---GGLVLVSHDFRLINQVAHEIW 553 (582)
Q Consensus 481 ~~~~~LSgGqkqrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~~~~~~d~i~ 553 (582)
.++..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|.++. .++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456789999999999999999 5899999999999999999999999998863 5899999997765 6899999
Q ss_pred EEe
Q 007982 554 VCE 556 (582)
Q Consensus 554 ~l~ 556 (582)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 210
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.38 E-value=1.6e-15 Score=159.51 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=95.8
Q ss_pred eEeeeEEEec--CCEEEEEcCCCCcHHHHHHHHhCCCCCCC----cEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc
Q 007982 383 YKNLDFGVDL--DSRVALVGPNGAGKSTLLKLMTGDLVPLD----GMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE 456 (582)
Q Consensus 383 l~~vsl~i~~--Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 456 (582)
...|++.|.+ |++++|+||||||||||+++|+|++.|++ |.+...+... + ... .+... .. ..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-~---~~~--~~~~~-~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-G---DEQ--AMQYS-DY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-S---CTT--SSCTT-TH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-C---Ccc--cCChh-HH-HHHHHH
Confidence 3568999999 99999999999999999999999999998 7664321000 0 000 00000 00 111110
Q ss_pred CCCChHHHHHHHHHhc--CCCCccccCCCCCCChhHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHH
Q 007982 457 YPGNEEEKMRAAIGRF--GLTGKAQVMPMKNLSDGQRSRVVFAWLAY-RQPHMLLLDE---PT------NHLDIETIDSL 524 (582)
Q Consensus 457 ~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~lLlLDE---Pt------~~LD~~~~~~l 524 (582)
+.. .........+.+ +-.+.... .+..+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+
T Consensus 230 ~q~-~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 230 HQR-YIDYAVRHSHKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HHH-HHHHHHHHCSSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HHH-HHHHHHhccCCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 000 000000111111 11111111 12356777788888888774 6999999999 65 58999999998
Q ss_pred HHHHHh----cCceEEEEecCHHHHHhhcCEEEEEe
Q 007982 525 AEALNE----WDGGLVLVSHDFRLINQVAHEIWVCE 556 (582)
Q Consensus 525 ~~~l~~----~~~tvi~vsHd~~~~~~~~d~i~~l~ 556 (582)
.++|.+ .+.+||+++|. ....++|+++.+++
T Consensus 308 ~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 888743 36789999986 45556777665553
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.38 E-value=4.4e-15 Score=140.92 Aligned_cols=138 Identities=16% Similarity=0.062 Sum_probs=82.8
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce---------eEEEechhhhhhcCCcccHHHHHHhc---
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL---------RIAQFHQHLAEKLDMDMSALQYMIKE--- 456 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~--- 456 (582)
.+.+|++++|+||||||||||+++|+|. |..|.|...+.. .++|++|... ...++.+++...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999998 778988775431 1233333221 112233322110
Q ss_pred C--CCChHHHHHHHHHhcCCCCccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC-
Q 007982 457 Y--PGNEEEKMRAAIGRFGLTGKAQ-VMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWD- 532 (582)
Q Consensus 457 ~--~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~- 532 (582)
+ .... ..+..++..+++..... ..++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 0 0000 00000111112211110 2344689999999999999999999886 68888888888776643
Q ss_pred -ceEEEEecC
Q 007982 533 -GGLVLVSHD 541 (582)
Q Consensus 533 -~tvi~vsHd 541 (582)
..+++.|++
T Consensus 150 ~~~~~i~t~~ 159 (191)
T 1zp6_A 150 FEHHVLPVSG 159 (191)
T ss_dssp GGGGEEECTT
T ss_pred ccccEEECCC
Confidence 234555553
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=2.2e-12 Score=126.69 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=75.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc--CCCCCCC-ceeeeeechHHH----HHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE--IEASDMS-SLEAVISCDEER----LKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~--~~~~~~~-~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
-|++|++++|+||||||||||++.|++ +.+++.+ ...+.+.++... ..+......+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g---------------- 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG---------------- 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTT----------------
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcC----------------
Confidence 378999999999999999999999987 4433110 001222222111 01111111111
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH-HHHHHHHh--cCCCceeecCCCCCCCHH-------H--
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR-IALARALF--INPTILLLDEPTNHLDLE-------A-- 234 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR-v~LAraL~--~~P~lLlLDEPt~~LD~~-------~-- 234 (582)
+... ++++.+- ....++..+... +.-+..++ .+|++|++|||++.+|+. +
T Consensus 84 ---~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r 145 (243)
T 1n0w_A 84 ---LSGS-------DVLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSAR 145 (243)
T ss_dssp ---CCHH-------HHHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHH
T ss_pred ---CCHH-------HHhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHH
Confidence 0100 1111111 112344444332 22233333 589999999999999975 2
Q ss_pred ---HHHHHHHH----hhcCcEEEEEecCHHHHHh-------------------hcCeEEEEeCC
Q 007982 235 ---CVWLEETL----KKFDRILVVISHSQDFLNG-------------------VCTNIIHMQNK 272 (582)
Q Consensus 235 ---~~~l~~~l----~~~~~tviivsHd~~~~~~-------------------~~d~i~~l~~G 272 (582)
...+...| ++.+.|||+++|....... +||++++|+.+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 146 QMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 22333333 3458899999997665433 89999999865
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1e-13 Score=146.91 Aligned_cols=167 Identities=10% Similarity=0.036 Sum_probs=98.5
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cC--ceeEEEechh
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HN--HLRIAQFHQH 438 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~--~~~~~~~~q~ 438 (582)
.|++.+ ++.|++ .+ ++++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... .+ ...+++++|.
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 466667 788864 45 9999999999999 99999999999999999999852 221111 00 1246777775
Q ss_pred hhhhcCCcccHHHHHHhcCCCC-----------hHHHHHHHHHhc-CCCCc---cccCC-----------CCCCChhHHH
Q 007982 439 LAEKLDMDMSALQYMIKEYPGN-----------EEEKMRAAIGRF-GLTGK---AQVMP-----------MKNLSDGQRS 492 (582)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gl~~~---~~~~~-----------~~~LSgGqkq 492 (582)
.. +....++.+++....... ....+..+|..+ ++... ..+.+ -..|+..+
T Consensus 91 ~~--l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SN--VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp ----CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Cc--cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 32 111222222221110000 123445556554 54311 00111 12466555
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCH
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE----WDGGLVLVSHDF 542 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~ 542 (582)
+.|+++|..++++|++||||..|.+.....+.+.+++ .+.+|+.+|.|-
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7899999999999999999999999888777777664 356788888763
No 214
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.33 E-value=2.9e-15 Score=167.34 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=86.2
Q ss_pred ceEEeeeEEEECCe--eeeEee----------eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-CCCceeeeeechHH
Q 007982 72 DIRIESLSVTFHGH--DLIVDS----------ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-DMSSLEAVISCDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y~~~--~il~~v----------sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-~~~~~~~~i~~~~~ 138 (582)
.+.++||++.|+.+ ++|+.+ +|+++. ++|||||||||||||++|+|+..| +.|.+. +.+.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt----~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT----RCPL 82 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC----CSCE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE----EcCE
Confidence 57899999999753 355444 366654 999999999999999999999766 444321 1110
Q ss_pred HHH------HHHHHHHhccccC-CCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH
Q 007982 139 RLK------LEKEAEILGAQED-GGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA 211 (582)
Q Consensus 139 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 211 (582)
.+. .......+++.++ ........+.+ .+......++.. ...+| ++++.++
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e------------~i~~~~~~~~~~-------~~~~s---~~~i~l~ 140 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEK------------EINKAQNAIAGE-------GMGIS---HELITLE 140 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHT------------THHHHHHHHHCS-------SSCCC---SCCEEEE
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHH------------HHHHHHHHhcCC-------ccccc---hHHHHHH
Confidence 000 0000001111110 00111111211 111111111110 00111 2233344
Q ss_pred HHHhcCCCceeecCC------CCCCCHHHHHHHHHHHhhc-----CcEEEEEecCHHHH--------Hhh----cCeEEE
Q 007982 212 RALFINPTILLLDEP------TNHLDLEACVWLEETLKKF-----DRILVVISHSQDFL--------NGV----CTNIIH 268 (582)
Q Consensus 212 raL~~~P~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tviivsHd~~~~--------~~~----~d~i~~ 268 (582)
.+....|+++|+||| |++||+..+..+.+++.++ ..++++++||++.+ ..+ +..|++
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 444568999999999 9999999999999988875 45899999997633 222 355788
Q ss_pred EeCCeE
Q 007982 269 MQNKQL 274 (582)
Q Consensus 269 l~~G~i 274 (582)
+.++.+
T Consensus 221 lTK~Dl 226 (608)
T 3szr_A 221 LTKPDL 226 (608)
T ss_dssp EECGGG
T ss_pred ecchhh
Confidence 876433
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=4.1e-13 Score=126.29 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=36.2
Q ss_pred hcCCCceeecCCCC-CCCHHHHHHHHHHHhhc---CcEEEEEecCHH
Q 007982 215 FINPTILLLDEPTN-HLDLEACVWLEETLKKF---DRILVVISHSQD 257 (582)
Q Consensus 215 ~~~P~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tviivsHd~~ 257 (582)
+.+|++||||||++ ++|+..+..+.+++... +.++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 99999999988888653 679999999753
No 216
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.32 E-value=3e-14 Score=141.19 Aligned_cols=131 Identities=20% Similarity=0.276 Sum_probs=82.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEEEEcCc---eeEEEechhhh--hhcCCcccHHHHHHh--------
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMT---GDLVPLDGMVRRHNH---LRIAQFHQHLA--EKLDMDMSALQYMIK-------- 455 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~---Gl~~p~~G~i~~~~~---~~~~~~~q~~~--~~~~~~~~~~~~~~~-------- 455 (582)
.+++++|+||||||||||+++|+ |+..|+.|.|.+.+. ..+++..+.+. ..+.+..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 37899999999999999999999 999999998865421 01111111100 111222333333321
Q ss_pred -----cCCCChHHHHHHHHH--hcC------------CCCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe----C
Q 007982 456 -----EYPGNEEEKMRAAIG--RFG------------LTGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLD----E 511 (582)
Q Consensus 456 -----~~~~~~~~~~~~~l~--~~g------------l~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLD----E 511 (582)
.++.. ..+++.+.. .++ +. ....+++..||| || +++ +.+|++++|| |
T Consensus 106 ~~il~g~~~~-~~~~~~l~~~~~~~~vi~L~~~~~~~l~-r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRT-LGQAEALDKICEVDLVISLNIPFETLKD-RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCS-HHHHHHHHTTCCCCEEEEEECCHHHHHH-HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCC-HHHHHHHHhhcCCCEEEEEECCHHHHHH-HHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 12222 223333322 222 11 112345578999 66 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 007982 512 PTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 512 Pt~~LD~~~~~~l~~~l~~~ 531 (582)
||++||+.+...+.+.+..+
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999988888776
No 217
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=7.4e-14 Score=131.41 Aligned_cols=109 Identities=12% Similarity=0.114 Sum_probs=72.0
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHH
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (582)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|... .++. ..+.+ ..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~~------------~~~~~---------~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFFD------------TKDLI---------FRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEEE------------HHHHH---------HHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEEE------------HHHHH---------HHHH
Confidence 456778999999999999999999999999877666311 1110 00100 0011
Q ss_pred HHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecCH
Q 007982 467 AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETIDSLAEALNEW---DGGLVLVSHDF 542 (582)
Q Consensus 467 ~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 542 (582)
....... .. -....+.+|++||||||++ ++|+.....+.++++.. +.++|++||..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1111000 00 0112234999999999985 99999999988888654 67899999976
Q ss_pred H
Q 007982 543 R 543 (582)
Q Consensus 543 ~ 543 (582)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 3
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=2.2e-16 Score=149.94 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=93.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----eEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHH
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----RIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRA 467 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (582)
|++++|+||||||||||+++|++ |..|.+...+.. ..+++++... .....++.+++.. .+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~--------~~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITD--------LTVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHH--------HHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHH--------HHHH
Confidence 67999999999999999999997 667877664321 1122222210 0011122222110 0111
Q ss_pred HHHhcCC----C---CccccCCCCCC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-
Q 007982 468 AIGRFGL----T---GKAQVMPMKNL--SDGQRSRVVFAW------LAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW- 531 (582)
Q Consensus 468 ~l~~~gl----~---~~~~~~~~~~L--SgGqkqrv~lAr------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 531 (582)
.+. .+. + .......+..+ |+|++|++.++. +++.+|....+|+ +||+..+.. .+.+..+
T Consensus 69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 111 110 0 00000112235 888888888888 8889998888884 899988877 7766654
Q ss_pred --CceEEEEecC-HHHHHhhcCEEEEEeCCeEEEEcCCHHHH
Q 007982 532 --DGGLVLVSHD-FRLINQVAHEIWVCENQAVTRWEGDIMDF 570 (582)
Q Consensus 532 --~~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 570 (582)
+.++|.+||. ++.+.++||+|+ ++|+++ ++|+++-+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCch
Confidence 4589999999 999999999998 999985 57777544
No 219
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.32 E-value=9.2e-15 Score=153.62 Aligned_cols=169 Identities=9% Similarity=-0.020 Sum_probs=95.0
Q ss_pred eEeeeEEEeC--CcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 88 IVDSELELNY--GRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 88 l~~vsl~i~~--Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
...|+++|.+ |++++|+||||||||||+++|+|+..++.+...+.+.+. ... ...........+..+..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~-------~~~--~~~~~~~~~~~~~~I~~ 228 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF-------EKL--GGDEQAMQYSDYPQMAL 228 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH-------HSS--SSCTTSSCTTTHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH-------hhc--CCCcccCChhHHHHHHH
Confidence 4679999999 999999999999999999999999877531100111000 000 00000000000111111
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-cCCCceeecC---CC------CCCCHHHH
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-INPTILLLDE---PT------NHLDLEAC 235 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~lLlLDE---Pt------~~LD~~~~ 235 (582)
.... .......+.+-+..++.. ..+..+..+|+|++|+..+++++. .+|+++|||| |+ .++|+..+
T Consensus 229 ~~q~--~~~~~~t~~~nl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 229 GHQR--YIDYAVRHSHKIAFIDTD--FITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HHHH--HHHHHHHHCSSEEEESSC--HHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred HHHH--HHHHHHhccCCEEEEeCC--chHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence 0000 000000011101111111 123345567788888988888875 6999999999 65 58999999
Q ss_pred HHHHHHHhh----cCcEEEEEecCHHHHHhhcCeEEEEe
Q 007982 236 VWLEETLKK----FDRILVVISHSQDFLNGVCTNIIHMQ 270 (582)
Q Consensus 236 ~~l~~~l~~----~~~tviivsHd~~~~~~~~d~i~~l~ 270 (582)
..+.+.|.+ .+.++|+++|. +...++|+++.+|+
T Consensus 305 ~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 305 QQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp HHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 888888743 36789999976 45666777666554
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.30 E-value=9e-14 Score=141.67 Aligned_cols=118 Identities=17% Similarity=0.046 Sum_probs=81.6
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHH
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEE 463 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (582)
++++|+ +|++++|+|+||+||||++..|+|++.+..|+|...+. -.+.... . .
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~-----d~~~~~~-------~-------------~ 143 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA-----DTQRPAA-------R-------------E 143 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC-----CSSCHHH-------H-------------H
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC-----CcccHhH-------H-------------H
Confidence 356666 89999999999999999999999999988888865321 1111100 0 0
Q ss_pred HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHHhc
Q 007982 464 KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP-TNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 ~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~ 531 (582)
....+.+..|+.-.... + ..+..+.+|.+|+++...+++++|+||| +.++|......+.......
T Consensus 144 ql~~~~~~~~l~~~~~~-~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 144 QLRLLGEKVGVPVLEVM-D--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHTCCEEECC-T--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCeEEEEcC-C--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 11123344565432110 1 1234456789999998899999999999 9999998888887776654
No 221
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.29 E-value=5.2e-13 Score=141.91 Aligned_cols=142 Identities=25% Similarity=0.247 Sum_probs=87.2
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC-----------CCCCcEEEEcCceeEEEechhhhhhcCCcccHHH
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL-----------VPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQ 451 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~-----------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~ 451 (582)
-++++|+++.|++++|+|+|||||||||+.|+|.. .|..|.|...+...+ .+.+.+. ......+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~DtpG----li~~a~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIPG----IIEGASE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECCC----CCCCGGG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEeccc----cccchhh
Confidence 47999999999999999999999999999999983 344444443221111 1111110 0000000
Q ss_pred HHHhcCCCC---hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HH
Q 007982 452 YMIKEYPGN---EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDS---LA 525 (582)
Q Consensus 452 ~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~---l~ 525 (582)
. ..+... ..+++..++..++++ ..++.+||+|++|++.+|++|+..|.+|+| |.+|+..... +.
T Consensus 222 ~--~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~ 291 (416)
T 1udx_A 222 G--KGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALA 291 (416)
T ss_dssp S--CCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHH
T ss_pred h--hhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHH
Confidence 0 000000 001122234444554 346678999999999999999999999999 9999865533 33
Q ss_pred HHHHhcCceEEEEe
Q 007982 526 EALNEWDGGLVLVS 539 (582)
Q Consensus 526 ~~l~~~~~tvi~vs 539 (582)
+.++..+.++++||
T Consensus 292 ~~l~~~g~~vi~iS 305 (416)
T 1udx_A 292 DALAREGLAVLPVS 305 (416)
T ss_dssp HHHHTTTSCEEECC
T ss_pred HHHHhcCCeEEEEE
Confidence 33344455777666
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.29 E-value=4.7e-13 Score=132.54 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh---cCCCCCCCceeeeeechHHHH--HHHHHHHHhccccC--CCcchHHHHHHHHH-
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIG---EIEASDMSSLEAVISCDEERL--KLEKEAEILGAQED--GGGEQLERVYERLE- 168 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~---~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~l~- 168 (582)
++++++|+||||||||||+++|+ |+..++.+.+ .+.+... ........+..... +.......+...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF----LRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH----HHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH----HHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 8876653321 1111100 01111111111111 11111222322221
Q ss_pred ---------cCChhHHHHHHHHHH--HhCC------------CChhhhhccCCCCChhHHHHHHHHHHH-hcCCCceeec
Q 007982 169 ---------ALDASTAEKRAAEIL--YGLG------------FNKTMQAKKTRDFSGGWRMRIALARAL-FINPTILLLD 224 (582)
Q Consensus 169 ---------~~~~~~~~~~~~~~l--~~lg------------l~~~~~~~~~~~LSGGqrqRv~LAraL-~~~P~lLlLD 224 (582)
.++... ..+..+. ..++ + ....++++..||| |+ +|| +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l-~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLK-DRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp CTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHH-HHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred cCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHH-HHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 111111 2223332 2233 2 2345678889999 66 778 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHhhc
Q 007982 225 ----EPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 225 ----EPt~~LD~~~~~~l~~~l~~~ 245 (582)
|||++||+.+...+.+.|+++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHH
Confidence 999999999999998888776
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.28 E-value=3.1e-15 Score=141.97 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCC--ChhHHHHHHHHH------HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEEEecC-HHHHHhhcCe
Q 007982 198 RDF--SGGWRMRIALAR------ALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVVISHS-QDFLNGVCTN 265 (582)
Q Consensus 198 ~~L--SGGqrqRv~LAr------aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tviivsHd-~~~~~~~~d~ 265 (582)
..+ |+|++|++.++. +++.+|....+|+ +||+..+.. .+.+..+ +.++|.+||. ++.+..+||+
T Consensus 91 ~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~ 166 (189)
T 2bdt_A 91 AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKN 166 (189)
T ss_dssp HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHH
T ss_pred HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHH
Confidence 445 999999998888 9999999999994 899988777 6666554 4689999999 9999999999
Q ss_pred EEEEeCCeEEEEcCChhH
Q 007982 266 IIHMQNKQLKFYTGNFDQ 283 (582)
Q Consensus 266 i~~l~~G~i~~~~g~~~~ 283 (582)
|+ ++|+++ ..|+++.
T Consensus 167 i~--~~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 167 LK--TNPRFI-FCMAGDP 181 (189)
T ss_dssp HH--HCGGGS-CC-----
T ss_pred Hh--hCCcEE-EeecCCc
Confidence 99 999986 3555543
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=1.5e-13 Score=130.30 Aligned_cols=43 Identities=14% Similarity=-0.034 Sum_probs=37.0
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
.++..+|+|++|+++++|++..+|+++ +|+.....+.+.+..+
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 456789999999999999999999987 6888888888877654
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.24 E-value=5.9e-13 Score=140.00 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=82.9
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC-CCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD-MSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
+|++++ +++|++++|+||||||||||+++|+++.+++ .+.+. ..+... + +.... ....
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~----~~e~~~------e-~~~~~-~~~~------- 185 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII----TIEDPI------E-YVFKH-KKSI------- 185 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE----EEESSC------C-SCCCC-SSSE-------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE----EecccH------h-hhhcc-CceE-------
Confidence 344444 7899999999999999999999999887654 33221 111000 0 00000 0000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+.. ..+|+ .+..| +.+|+++|..+|++|++|||| |+++...+.+.. ..
T Consensus 186 ----v~Q-----------~~~g~-------~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~ 233 (372)
T 2ewv_A 186 ----VNQ-----------REVGE-------DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ET 233 (372)
T ss_dssp ----EEE-----------EEBTT-------TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TT
T ss_pred ----EEe-----------eecCC-------CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hc
Confidence 000 01222 12344 569999999999999999999 887766555544 34
Q ss_pred CcEEEEEecCHHHHHhhcCeEEEE
Q 007982 246 DRILVVISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 246 ~~tviivsHd~~~~~~~~d~i~~l 269 (582)
+.++|.++|+.+ +..+|||++.|
T Consensus 234 g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 234 GHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp TCEEEECCCCCS-HHHHHHHHHHT
T ss_pred CCEEEEEECcch-HHHHHHHHHHh
Confidence 778999999966 67788887655
No 226
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=3.3e-11 Score=127.46 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=82.8
Q ss_pred EEecCCEEEEEcCCCCcHHHHHH--HHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLK--LMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMR 466 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~--ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (582)
.|.+|++++|+||||||||||++ ++.++.+|+.|.- + ...-|+.... . ....+++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~-~~viyid~E~----~---------------~~~~rl~ 230 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---E-GKCLYIDTEG----T---------------FRPVRLV 230 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---S-SEEEEEESSS----C---------------CCHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---C-CcEEEEeCCC----c---------------cCHHHHH
Confidence 48899999999999999999999 4467777654410 0 0111221110 0 0112233
Q ss_pred HHHHhcCCCCcc--ccCCCCCCChhHHHH--HHHHHHH--ccCCCEEEEeCCCCCCCHHHH------------HHHHHHH
Q 007982 467 AAIGRFGLTGKA--QVMPMKNLSDGQRSR--VVFAWLA--YRQPHMLLLDEPTNHLDIETI------------DSLAEAL 528 (582)
Q Consensus 467 ~~l~~~gl~~~~--~~~~~~~LSgGqkqr--v~lAral--~~~p~lLlLDEPt~~LD~~~~------------~~l~~~l 528 (582)
....++|+.... ..-.+.....++.++ +.-+..+ ..+|++|++||||+.+|.+.. ..+...|
T Consensus 231 ~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 231 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRAL 310 (400)
T ss_dssp HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHH
Confidence 334444443210 000011122333333 3323333 257999999999999996432 2333333
Q ss_pred ----HhcCceEEEEecCH-------------------HHHHhhcCEEEEEeCC
Q 007982 529 ----NEWDGGLVLVSHDF-------------------RLINQVAHEIWVCENQ 558 (582)
Q Consensus 529 ----~~~~~tvi~vsHd~-------------------~~~~~~~d~i~~l~~G 558 (582)
++++.|||+|+|.. ..+..++|.+++|+.+
T Consensus 311 ~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 44588999999982 2357789999999865
No 227
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=7e-13 Score=140.59 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=93.8
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcCCCCC-------CCceeeeeechHHHHHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEIEASD-------MSSLEAVISCDEERLKL 142 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~~~~~-------~~~~~~~i~~~~~~~~~ 142 (582)
.|++++ ++.|++.+ |+++||+|++|++ ++||||||||||||+|+|+|+.... .+.....+.+..+...+
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 577777 89998888 9999999999999 9999999999999999999874211 00000011110000000
Q ss_pred HHHHHHhcc-ccCCCcc--hHHHHHHHHHcCChhHHHHHHHHHHHhC-CCChh---hhhccC-----------CCCChhH
Q 007982 143 EKEAEILGA-QEDGGGE--QLERVYERLEALDASTAEKRAAEILYGL-GFNKT---MQAKKT-----------RDFSGGW 204 (582)
Q Consensus 143 ~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~l-gl~~~---~~~~~~-----------~~LSGGq 204 (582)
...+.. ....... .....+..+ ...+...+.++|... ++... ..+..+ ..|+-..
T Consensus 94 ---~~~ltv~D~~~~g~~~~~~~~~~~i----~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D 166 (427)
T 2qag_B 94 ---RLKLTIVSTVGFGDQINKEDSYKPI----VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD 166 (427)
T ss_dssp ---EEEEEEEEEECCCC-CCHHHHSHHH----HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred ---ccccchhhhhhhhhccccchhhhHH----HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence 000000 0000000 000000000 012234455555544 43210 011111 2455444
Q ss_pred HHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh----cCcEEEEEecCH
Q 007982 205 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK----FDRILVVISHSQ 256 (582)
Q Consensus 205 rqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tviivsHd~ 256 (582)
+.++++|..+++||++||||..|.+.....+.+.+++ .+..|+.+|.|-
T Consensus 167 ---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 ---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp ---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred ---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 8999999999999999999999999888888777654 367888888763
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=7.6e-12 Score=114.32 Aligned_cols=86 Identities=24% Similarity=0.252 Sum_probs=61.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
+|+.++|+||||||||||+++|++.+.+ +|. ...|+... . +. ..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~-~~-------------~~------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--S-MP-------------LT------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--T-SC-------------CC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--H-hh-------------HH------------
Confidence 8999999999999999999999999876 451 12222211 0 00 00
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-EEEEecC
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGG-LVLVSHD 541 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-vi~vsHd 541 (582)
+++.+|++|+||||+. +|....+.+.+.++.. +.+ +|++||.
T Consensus 79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2356899999999998 6665577788887653 567 8888884
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.21 E-value=1.2e-11 Score=120.39 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=80.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCCh
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDA 172 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 172 (582)
-..++|++++|+||||||||||+++|+|+.+++ ...+.+.+....... .....+.+ .++....+..+...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~--~~~g~v~~ttr~~~~-~e~~gi~y-----~fq~~~~f~~~~~~-- 80 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY--DTQVSVSHTTRQPRP-GEVHGEHY-----FFVNHDEFKEMISR-- 80 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT--TEEECCCEECSCCCT-TCCBTTTB-----EECCHHHHHHHHHT--
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC--ceEEEEEecCCCCCc-ccccCceE-----EECCHHHHHHHHhc--
Confidence 467899999999999999999999999987752 112222222110000 00000111 11111111111100
Q ss_pred hHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEE
Q 007982 173 STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVI 252 (582)
Q Consensus 173 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviiv 252 (582)
.++++.+. ....+.|-.+++ +..++..++++||| ||+.++..+.+.+.+ +.||+++
T Consensus 81 -------~~f~E~~~--------~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~ 136 (219)
T 1s96_A 81 -------DAFLEHAE--------VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFIL 136 (219)
T ss_dssp -------TCEEEEEE--------ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEE
T ss_pred -------CHHHHHHH--------HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEE
Confidence 00000000 011111211222 34556678999999 999999999998873 6799999
Q ss_pred ecCHHHHHhhcCeEEEEeCCeEEEEcCChhHHH
Q 007982 253 SHSQDFLNGVCTNIIHMQNKQLKFYTGNFDQYV 285 (582)
Q Consensus 253 sHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 285 (582)
||+++.+.. |+ +.+| .++.+++.
T Consensus 137 th~~~~l~~---Rl--~~rG-----~~~~e~i~ 159 (219)
T 1s96_A 137 PPSKIELDR---RL--RGRG-----QDSEEVIA 159 (219)
T ss_dssp CSSHHHHHH---HH--HTTS-----CSCHHHHH
T ss_pred CCCHHHHHH---HH--HHcC-----CCCHHHHH
Confidence 999998876 43 5666 35555543
No 230
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=4.2e-11 Score=126.65 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=40.9
Q ss_pred cCCCceeecCCCCCCCHHHH------------HHHHHHH----hhcCcEEEEEecCH-------------------HHHH
Q 007982 216 INPTILLLDEPTNHLDLEAC------------VWLEETL----KKFDRILVVISHSQ-------------------DFLN 260 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~------------~~l~~~l----~~~~~tviivsHd~-------------------~~~~ 260 (582)
.+|++|++||||+.+|.... ..+++.| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996432 3334433 45588999999982 2357
Q ss_pred hhcCeEEEEeCC
Q 007982 261 GVCTNIIHMQNK 272 (582)
Q Consensus 261 ~~~d~i~~l~~G 272 (582)
.+||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999865
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.19 E-value=5.3e-12 Score=131.19 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=73.4
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC-CCCcEEEEc-C-------ceeEEEechhhhhhcCCcccHHHHH
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV-PLDGMVRRH-N-------HLRIAQFHQHLAEKLDMDMSALQYM 453 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~~ 453 (582)
++++++. .+|++++|+||||||||||+++|+|++. |.+|.|... + ...+++++|... +....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 4555553 4799999999999999999999999999 999999754 2 234677777532 22222333321
Q ss_pred HhcCCCC-hHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHH
Q 007982 454 IKEYPGN-EEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLA 500 (582)
Q Consensus 454 ~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral 500 (582)
....+.. ....+.++++.+|+..+.. .++.+|| ||+||++||+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcC
Confidence 1111110 1233567788899976654 5567999 999999999875
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.16 E-value=2.3e-13 Score=125.68 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=50.3
Q ss_pred EEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 370 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 370 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
.++++.|+ +..+++++||+|.+|++++|+||||||||||+|+|+|++ |++|.|...+
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 45666775 356899999999999999999999999999999999999 9999997654
No 233
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.8e-11 Score=127.36 Aligned_cols=137 Identities=13% Similarity=0.197 Sum_probs=76.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCCcEEEEcCc---------eeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 395 RVALVGPNGAGKSTLLKLMTG-DLVPLDGMVRRHNH---------LRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G-l~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
.+.|+||||+|||||+++|+| ++.|..|.+...+. ..++++++.....+.. +. ........
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD-------MGNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh-------cCCcchHH
Confidence 489999999999999999999 88999998865432 1122222221100000 00 00011113
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDF 542 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 542 (582)
+++.++.+.-..... ... .||| +..+|++||||||++ ||..+...|.+.+.+. +.++|++||+.
T Consensus 109 ~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 109 IQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred HHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 444444432211111 111 5676 788999999999999 9999999999999986 45799999996
Q ss_pred HHH-HhhcCEEEE
Q 007982 543 RLI-NQVAHEIWV 554 (582)
Q Consensus 543 ~~~-~~~~d~i~~ 554 (582)
+.+ ..+.+|+.+
T Consensus 175 ~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 175 SPIIAPIKSQCLL 187 (354)
T ss_dssp CSSCHHHHTTSEE
T ss_pred HHHHHHHHhhceE
Confidence 542 234445433
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.15 E-value=4e-12 Score=131.16 Aligned_cols=167 Identities=11% Similarity=0.007 Sum_probs=94.8
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCcccHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
..+|++++|+||||||||||++.|+|+++|++|+|...+.. .+.+++|.. .+.+..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 36899999999999999999999999999999999764321 112333321 11222233333
Q ss_pred HHhcCCCChHHHHH-HHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 453 MIKEYPGNEEEKMR-AAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 453 ~~~~~~~~~~~~~~-~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
+.... ..... -+++..|..+.. ...+.+|| .+++++..++.+++||.+|. .|. ...+...-...
T Consensus 204 l~~~~----~~~~d~vliDtaG~~~~~-~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~ 268 (328)
T 3e70_C 204 IQHAK----ARGIDVVLIDTAGRSETN-RNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAV 268 (328)
T ss_dssp HHHHH----HHTCSEEEEEECCSCCTT-TCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHS
T ss_pred HHHHH----hccchhhHHhhccchhHH-HHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhc
Confidence 21100 00000 011222332211 11122333 48999999999999996665 332 22233333356
Q ss_pred CceEEEEecCH---------HHHHhhcCEEEEEeCCeEEE--EcCCHHHHHHH
Q 007982 532 DGGLVLVSHDF---------RLINQVAHEIWVCENQAVTR--WEGDIMDFKLH 573 (582)
Q Consensus 532 ~~tvi~vsHd~---------~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~ 573 (582)
+.++|++||.- ..+....-.|.++..|+.+. ..-+++.+...
T Consensus 269 ~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ 321 (328)
T 3e70_C 269 KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLER 321 (328)
T ss_dssp CCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHH
T ss_pred CCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHH
Confidence 78999999953 24445566788888887431 13345555443
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=5.1e-14 Score=146.25 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=100.8
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCc---------------ee
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNH---------------LR 431 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~---------------~~ 431 (582)
|+++++++.|+. ..++++++|++.+|++++|+||||||||||++.|+|++.|++|+|...+. .+
T Consensus 30 ie~~~~~~~~~~-~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAAV-RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHHH-HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccCh-HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 556677777753 56899999999999999999999999999999999999999999865321 12
Q ss_pred EEEechhhhhhcCCc----------ccHHHH-------------------------HHhc-------C-CC-ChH-H---
Q 007982 432 IAQFHQHLAEKLDMD----------MSALQY-------------------------MIKE-------Y-PG-NEE-E--- 463 (582)
Q Consensus 432 ~~~~~q~~~~~~~~~----------~~~~~~-------------------------~~~~-------~-~~-~~~-~--- 463 (582)
+++++|......... ....+. +... . +. .+. +
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 334444321100000 000000 0000 0 00 000 0
Q ss_pred -HHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 007982 464 -KMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYR------QPHMLLLDEPTNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 464 -~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 531 (582)
.+.+....+.++. .+..+...+|+|++|++..|++++. .|+++. ||++|...++.|.+.|.++
T Consensus 189 ~~i~~~~~ivvlNK-~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 189 KGIFELADMIAVNK-ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTHHHHCSEEEEEC-CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccccEEEEEc-hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0112222233321 1112224689999999999999887 688886 9999999999999888764
No 236
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.14 E-value=1.3e-13 Score=142.04 Aligned_cols=51 Identities=14% Similarity=0.090 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHH
Q 007982 485 NLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRLIN 546 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~ 546 (582)
+||+||+||+..+++++.+|+++ ||| ..+.+.+++. +.+|+++||+.-.+.
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 79999999999889999999987 999 4555555543 568999999644333
No 237
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.14 E-value=6e-14 Score=149.33 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=88.0
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce---------------
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------------- 430 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--------------- 430 (582)
++.++++.+.|+ ...+|+++ + ..+|++++|+|||||||||||++|+|++.|++|.|...+..
T Consensus 143 ~~~l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 456777777664 24577787 5 37899999999999999999999999999999998754321
Q ss_pred eEEEec---------hhhhhhcCC----cccHHHHHHhc---------CCCChHHHHHHHHHhcCCCCccccCCCCCCCh
Q 007982 431 RIAQFH---------QHLAEKLDM----DMSALQYMIKE---------YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488 (582)
Q Consensus 431 ~~~~~~---------q~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 488 (582)
.+++.+ |.+...+.. ..++.+.+... ....+...+...|..+|+.... .+.+|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHH
Confidence 011111 221100000 12444443221 0111223344467788887542 3478999
Q ss_pred hHHHHHHHHHHHccCCCEEE
Q 007982 489 GQRSRVVFAWLAYRQPHMLL 508 (582)
Q Consensus 489 Gqkqrv~lAral~~~p~lLl 508 (582)
||+|| |||+|+.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999976
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.13 E-value=2e-12 Score=124.78 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=80.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhc-cccCCCcchHHHHHHHHHcCChh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILG-AQEDGGGEQLERVYERLEALDAS 173 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 173 (582)
.++|++++|+||||||||||+++|+++..+. +...+.+..++....... ...+. ........ .++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHLDNRL-LEPRGLLPRKGAPE----------TFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBCCHHH-HGGGTCGGGTTSGG----------GBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcCCHHH-HHHhcccccCCCCc----------hhhHH
Confidence 4689999999999999999999999887643 111234444432211100 01110 00000000 01111
Q ss_pred HHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHH-HHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEE
Q 007982 174 TAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALA-RALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVI 252 (582)
Q Consensus 174 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA-raL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviiv 252 (582)
.....+..+...=.+.-...+ ....+|+||+||+++| ++++.++.++++|||. ...+...--.+|++
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDLTAIWDVSIRL 154 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGGGGTCSEEEEE
T ss_pred HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHHHHhcCEEEEE
Confidence 111112222221111101122 3346799999999998 9999999999999984 11123333467888
Q ss_pred ecCHHH-HHhhcCe
Q 007982 253 SHSQDF-LNGVCTN 265 (582)
Q Consensus 253 sHd~~~-~~~~~d~ 265 (582)
+++.+. +.+++.|
T Consensus 155 d~~~~~~~~R~~~R 168 (208)
T 3c8u_A 155 EVPMADLEARLVQR 168 (208)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHH
Confidence 888776 4555555
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.12 E-value=1.3e-12 Score=136.97 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=97.4
Q ss_pred EEeeeEEE---ECC--eeee---------EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHH
Q 007982 74 RIESLSVT---FHG--HDLI---------VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEER 139 (582)
Q Consensus 74 ~v~nls~~---y~~--~~il---------~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~ 139 (582)
++++++|+ |++ ..+| +++||.+++|++++|+||||||||||+++|+++.+++.+.+ .+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I----~ie~~~ 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI----TIEDVP 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE----EEESSS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE----EECCcc
Confidence 67788877 753 3445 99999999999999999999999999999999998875543 222110
Q ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCC
Q 007982 140 LKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPT 219 (582)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~ 219 (582)
.+....... .+++- ........++++..++..|+.++..+|+
T Consensus 213 --------e~~~~~~~~----------------------------~v~~v--~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 213 --------ELFLPDHPN----------------------------HVHLF--YPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp --------CCCCTTCSS----------------------------EEEEE--CC----------CCHHHHHHHHTTSCCS
T ss_pred --------ccCccccCC----------------------------EEEEe--ecCccccccccccCHHHHHHHHHhcCCC
Confidence 000000000 00000 0000001124667789999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeCCe
Q 007982 220 ILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 220 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 273 (582)
.+++|||+. .+... +.+.+..-..|++.++|+.+ +...++|+..|..+.
T Consensus 255 ~~l~~e~r~---~~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 255 RILLAELRG---GEAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp EEEESCCCS---THHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred EEEEcCchH---HHHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 999999996 22222 23333322347788999965 778899999887763
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=3.6e-12 Score=136.91 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=92.0
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------------eEEEechhhhhhcCCc
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------------RIAQFHQHLAEKLDMD 446 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~ 446 (582)
+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.. .+++++|... ....
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHH
Confidence 57899999999999999999999999999999999999999875321 1233333211 1112
Q ss_pred ccHHHHHHhcC-CCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc-cCCC-EEEEeCCCCCCCHHHHHH
Q 007982 447 MSALQYMIKEY-PGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY-RQPH-MLLLDEPTNHLDIETIDS 523 (582)
Q Consensus 447 ~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~-~~p~-lLlLDEPt~~LD~~~~~~ 523 (582)
.++.+++.... ...+ .-+++..|...... ..+.+| ++++.+++++. ..|+ +||...||.|.|... .
T Consensus 362 ~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~~-~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al~--~ 430 (503)
T 2yhs_A 362 SVIFDAIQAAKARNID----VLIADTAGRLQNKS-HLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--Q 430 (503)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCSCCCHH-HHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--H
T ss_pred HHHHHHHHHHHhcCCC----EEEEeCCCccchhh-hHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHHH--H
Confidence 22222221100 0000 00112223221111 111222 47788888664 5574 554555888865442 2
Q ss_pred HHHHHHhcCceEEEEecCHH----------HHHhhcCEEEEEeCCe
Q 007982 524 LAEALNEWDGGLVLVSHDFR----------LINQVAHEIWVCENQA 559 (582)
Q Consensus 524 l~~~l~~~~~tvi~vsHd~~----------~~~~~~d~i~~l~~G~ 559 (582)
+..+-...+.+.|++|| ++ .+..+.-.|.++..|.
T Consensus 431 ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 22323346788999999 33 3333445677776665
No 241
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.12 E-value=3.2e-13 Score=147.39 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=96.1
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--------eEEEechh--------hhhh--
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--------RIAQFHQH--------LAEK-- 442 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--------~~~~~~q~--------~~~~-- 442 (582)
.++++++|.+.+|+.++|+|||||||||||++|+|+++|++|.|+..+.. .+....+. +...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999875432 11222111 0000
Q ss_pred --c--CC------ccc---HHHHHHhcCCCC------hHHHHHHHHHhc-----CCCCccc---c---CCCCCCChhHHH
Q 007982 443 --L--DM------DMS---ALQYMIKEYPGN------EEEKMRAAIGRF-----GLTGKAQ---V---MPMKNLSDGQRS 492 (582)
Q Consensus 443 --~--~~------~~~---~~~~~~~~~~~~------~~~~~~~~l~~~-----gl~~~~~---~---~~~~~LSgGqkq 492 (582)
+ .+ ..+ ....+....... ....+.+++.++ ++..... + .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 0 00 010 111111100000 001123333333 2221110 0 122468999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecCHHHHHhhcCE
Q 007982 493 RVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW---DGGLVL--VSHDFRLINQVAHE 551 (582)
Q Consensus 493 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~~~~~~d~ 551 (582)
|+++|. + | |+|||+.+...+.+.+.++ +.|+++ +||+++.+...|+.
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 887651 1 7 9999998876666666554 467775 89999999988853
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.10 E-value=6.8e-13 Score=128.02 Aligned_cols=136 Identities=18% Similarity=0.096 Sum_probs=80.7
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCceeEEEechhhhhhcCCcccHHHHHH----hcCC-CCh
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMI----KEYP-GNE 461 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~----~~~~-~~~ 461 (582)
..+|++++|+||||||||||+++|+|++.|. .|.|...+.. +..+....+. ...+ ..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH--------------LDNRLLEPRGLLPRKGAPETFD 84 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB--------------CCHHHHGGGTCGGGTTSGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc--------------CCHHHHHHhcccccCCCCchhh
Confidence 4689999999999999999999999999864 4455433211 0001110000 0011 012
Q ss_pred HHHHHHHHHhcC----CCCccccCCCCCCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEE
Q 007982 462 EEKMRAAIGRFG----LTGKAQVMPMKNLSDGQRSRVVFA-WLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLV 536 (582)
Q Consensus 462 ~~~~~~~l~~~g----l~~~~~~~~~~~LSgGqkqrv~lA-ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi 536 (582)
...+.+.+..+. +.-...... ..+|+||+|++++| ++++.++.++++|||.. ..+...--.+|
T Consensus 85 ~~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i 152 (208)
T 3c8u_A 85 FEGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSI 152 (208)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEE
T ss_pred HHHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEE
Confidence 222333333321 111112222 36899999999998 88888888888888841 11233334688
Q ss_pred EEecCHHH-HHhhcCE
Q 007982 537 LVSHDFRL-INQVAHE 551 (582)
Q Consensus 537 ~vsHd~~~-~~~~~d~ 551 (582)
+++++.+. +.+++.|
T Consensus 153 ~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 153 RLEVPMADLEARLVQR 168 (208)
T ss_dssp EECCCHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHH
Confidence 89998887 5566666
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.10 E-value=1.1e-12 Score=121.14 Aligned_cols=54 Identities=20% Similarity=0.025 Sum_probs=47.3
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
++..++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|+. ++.+
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 33456788888888999999999999999999999999999999999988 5544
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.09 E-value=5.8e-13 Score=124.58 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=72.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCC---CcEEEEcCceeEEEec----hhhh-hhcC-------CcccHHHHHHhcCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPL---DGMVRRHNHLRIAQFH----QHLA-EKLD-------MDMSALQYMIKEYP 458 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~---~G~i~~~~~~~~~~~~----q~~~-~~~~-------~~~~~~~~~~~~~~ 458 (582)
++++|+|+||||||||+++|+|++.|+ .|.|...+.. +..+. .... .... .+...+ +..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~-i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG-DFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEEEE--EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc-cccCCccchhHHHHHhcCCceEEECCCcEEE--Eec---
Confidence 589999999999999999999999998 8999875532 11110 0000 0000 000000 000
Q ss_pred CChHH--HHHHHHHh-c-CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CCCHHHHHHH
Q 007982 459 GNEEE--KMRAAIGR-F-GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHML-------LLDEPTN---HLDIETIDSL 524 (582)
Q Consensus 459 ~~~~~--~~~~~l~~-~-gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lL-------lLDEPt~---~LD~~~~~~l 524 (582)
..... .+.+++.. + |+.... ...|||||+||++|||+++.+|++. +=|.|.. -+|....+.+
T Consensus 77 ~~~~~~a~l~~~i~~~l~g~dt~i----~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~ 152 (171)
T 2f1r_A 77 VSEEEGNDLDWIYERYLSDYDLVI----TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERI 152 (171)
T ss_dssp CCHHHHTCHHHHHHHHTTTCSEEE----EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHH
T ss_pred CChhhhhCHHHHHHhhCCCCCEEE----ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHH
Confidence 01111 34455555 4 343222 2349999999999999999998773 2355532 2344556666
Q ss_pred HHHHHh
Q 007982 525 AEALNE 530 (582)
Q Consensus 525 ~~~l~~ 530 (582)
.+.|.+
T Consensus 153 a~~i~~ 158 (171)
T 2f1r_A 153 AEFILS 158 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 245
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.09 E-value=3.1e-12 Score=135.99 Aligned_cols=147 Identities=23% Similarity=0.210 Sum_probs=85.2
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC-------CCCceeeeeechHHHHHHHHHHHHhccccCCCcchH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS-------DMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQL 160 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (582)
-++++|+++.|+.++|||+||||||||+++|++..+. +.....+.+.+.... .......+......
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~-------~~~l~DtpGli~~a 219 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-------RFTLADIPGIIEGA 219 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSC-------EEEEEECCCCCCCG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcc-------eEEEEeccccccch
Confidence 4789999999999999999999999999999987431 001111222221100 00000000000000
Q ss_pred HHHHHHHHcCChhHH--HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHH
Q 007982 161 ERVYERLEALDASTA--EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL 238 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~--~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l 238 (582)
.. ...+..... .+++..++..++++ +.++.+||+||+|++++|++|+..|.+|+| |.+|+.....+
T Consensus 220 ~~----~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~ 287 (416)
T 1udx_A 220 SE----GKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAV 287 (416)
T ss_dssp GG----SCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHH
T ss_pred hh----hhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHH
Confidence 00 000000000 11233344555553 356788999999999999999999999999 99998655332
Q ss_pred ---HHHHhhcCcEEEEEe
Q 007982 239 ---EETLKKFDRILVVIS 253 (582)
Q Consensus 239 ---~~~l~~~~~tviivs 253 (582)
.+.+++.+.++|+||
T Consensus 288 ~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 288 KALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHHTTTSCEEECC
T ss_pred HHHHHHHHhcCCeEEEEE
Confidence 333334455666655
No 246
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=6.3e-11 Score=108.17 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcE-EEEEecC
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRI-LVVISHS 255 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-viivsHd 255 (582)
++.+|++||||||++ +|....+.+.+++... +.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999998 6665577788877543 567 8888884
No 247
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.07 E-value=6.1e-12 Score=127.72 Aligned_cols=120 Identities=12% Similarity=0.031 Sum_probs=74.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhc-----------CCC-
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKE-----------YPG- 459 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----------~~~- 459 (582)
.+.+++|+|++|||||||+++|.+++.+. |. ....+..++|+.. ....+..+++... .+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f---~~~~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF---YLTHEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG---BCCHHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc---cCChHHHHHHhccccccchhhhccCcch
Confidence 46799999999999999999999998763 20 0111222244422 1222333333211 122
Q ss_pred ChHHHHHHHHHhcCCC------Cc--cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 007982 460 NEEEKMRAAIGRFGLT------GK--AQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIET 520 (582)
Q Consensus 460 ~~~~~~~~~l~~~gl~------~~--~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~ 520 (582)
.+...+.+.+..+.-. .. .... -..+||||+||+.+|++...+|+|||+||||+++|+..
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y-~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKY-DKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCE-ETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccC-ccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 2345566667666432 11 1111 25799999999999843333999999999999999853
No 248
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.07 E-value=3e-13 Score=140.41 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=50.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
+|+++++++.|+++.+++++||++.+|++++|+||||||||||+++|+++..++.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 57888999999888899999999999999999999999999999999977655433
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.07 E-value=2.6e-13 Score=130.15 Aligned_cols=163 Identities=22% Similarity=0.246 Sum_probs=85.3
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCC-------------CCCcEEEEcCceeEEEe-chhhhhhc-----CCcccHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLV-------------PLDGMVRRHNHLRIAQF-HQHLAEKL-----DMDMSALQ 451 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~-------------p~~G~i~~~~~~~~~~~-~q~~~~~~-----~~~~~~~~ 451 (582)
.+|++++|+||||||||||+++|+|+++ |..|.+ .+.. +.++ ...+.... ....++..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~~-~~~~~~~~~~~~i~~~~~l~~~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGKD-YYFVTREMMQRDIAAGDFIEHAEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTTT-BEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCce-EEEccHHHHHHHHHcCCCEeeeeecC
Confidence 4789999999999999999999999875 455542 1210 1111 01111000 00001111
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV---VFAW-LAYRQPHMLLLDEPTNHLDIETIDSLAEA 527 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAr-al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 527 (582)
++ + ....+.++++++.-... .... .+ .|-++.. ..++ +++.+|.+++|||||+++|.++.+.+.+.
T Consensus 79 n~---~-g~~~~~i~~~~~~~~~~-~~~~----~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~ 148 (198)
T 1lvg_A 79 NL---Y-GTSKEAVRAVQAMNRIC-VLDV----DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKR 148 (198)
T ss_dssp EE---E-EEEHHHHHHHHHTTCEE-EEEC----CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHH
T ss_pred cc---C-CCCHHHHHHHHHcCCcE-EEEC----CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 10 1 11344556665432110 0000 00 1111110 1455 67888899999999999999888888877
Q ss_pred HHhcCceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHHHHHHH
Q 007982 528 LNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFKLHLKA 576 (582)
Q Consensus 528 l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~ 576 (582)
|...... +.++|.. ..+|+|++.++ .+..+.++...+.+
T Consensus 149 l~~~~~~-~~~a~~~----~~~D~iivnd~-----le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 149 LAAARTD-MESSKEP----GLFDLVIINDD-----LDKAYATLKQALSE 187 (198)
T ss_dssp HHHHHHH-TTGGGST----TTCSEEEECSS-----HHHHHHHHHHHTHH
T ss_pred HHHHHHH-HHHhhcc----CCceEEEECCC-----HHHHHHHHHHHHHH
Confidence 7654222 2445621 56898877653 24445555554433
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.06 E-value=2.7e-10 Score=115.91 Aligned_cols=136 Identities=10% Similarity=0.115 Sum_probs=87.5
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
.+|++++|+|||||||||++..|++.+.+..|. ++.++.++.. ... ..+.+..+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~------------a~eqL~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIA------------AVEQLKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STT------------HHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cch------------HHHHHHHHHH
Confidence 468999999999999999999999999887782 2333333221 011 1222334445
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----CceEEEE--ecCHH
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-----DGGLVLV--SHDFR 543 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~v--sHd~~ 543 (582)
.+|+.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-. ..+++++ ||+.+
T Consensus 159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~ 227 (296)
T 2px0_A 159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE 227 (296)
T ss_dssp TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence 55654211 122 2334566664 4899999999 9999987665554433322 1234555 99999
Q ss_pred HHHhhcCEEEEEeCCeEE
Q 007982 544 LINQVAHEIWVCENQAVT 561 (582)
Q Consensus 544 ~~~~~~d~i~~l~~G~i~ 561 (582)
.+.++|+++..+..+.++
T Consensus 228 ~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 228 DMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 999999877656656654
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.06 E-value=8.6e-11 Score=119.99 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=72.8
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHH
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKM 465 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (582)
++|...+|++++|+|||||||||++..|++.+.+..|+|...+. +.. ... ..++.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~-----r~~------------a~eqL 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF-----RAA------------AIEQL 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT-----CHH------------HHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc-----cHH------------HHHHH
Confidence 45556789999999999999999999999999988887765321 100 000 01233
Q ss_pred HHHHHhcCCCCccccCCCCCCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q 007982 466 RAAIGRFGLTGKAQVMPMKNLSDGQRSRV---VFAWLAYRQPHMLLLDEPTN 514 (582)
Q Consensus 466 ~~~l~~~gl~~~~~~~~~~~LSgGqkqrv---~lAral~~~p~lLlLDEPt~ 514 (582)
..+++.+|+.. +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 45566677642 235789999999 89999999999999999975
No 252
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.05 E-value=6.5e-12 Score=129.32 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHHH
Q 007982 183 LYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFLN 260 (582)
Q Consensus 183 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~~ 260 (582)
+..+++.. ..++. .+||+||+||+..+++++.+|+++ ||| ..+.+.|+++ +.+|+++||+...+.
T Consensus 127 l~~vd~~~-~~~~~-~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 127 IALVDAVH-ADEQM-NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLG 193 (318)
T ss_dssp EEEEETTT-HHHHH-HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGG
T ss_pred EEEEEHHH-HHHHH-hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHH
Confidence 34445543 22322 379999999999999999999988 999 4555555544 579999999754444
Q ss_pred hhc
Q 007982 261 GVC 263 (582)
Q Consensus 261 ~~~ 263 (582)
.+.
T Consensus 194 ~l~ 196 (318)
T 1nij_A 194 LLF 196 (318)
T ss_dssp GGS
T ss_pred HHh
Confidence 443
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.00 E-value=2.3e-13 Score=130.49 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHH-HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCeEEEEeC
Q 007982 210 LAR-ALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQN 271 (582)
Q Consensus 210 LAr-aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~i~~l~~ 271 (582)
.++ +++.+|++++|||||+++|.++...+.+.|.....- +.++|.. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKEP----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGST----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhcc----CCceEEEECCC
Confidence 566 788899999999999999998888888777654221 2345621 56899887753
No 254
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.99 E-value=1.2e-12 Score=142.87 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=94.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceee--e--eechH--------------HHHHHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEA--V--ISCDE--------------ERLKLEKEAE 147 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~--~--i~~~~--------------~~~~~~~~~~ 147 (582)
.++++++|.+++|+.++|+||||||||||+++|+++.+++.+.+.. . +.... ....+.....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678899999999999999999999999999999988876553321 0 00000 0001111111
Q ss_pred HhccccCC-------CcchHHHHHHHHH-cCC------hhHHHHHHHHHHH-hCCCChhhh---h---ccCCCCChhHHH
Q 007982 148 ILGAQEDG-------GGEQLERVYERLE-ALD------ASTAEKRAAEILY-GLGFNKTMQ---A---KKTRDFSGGWRM 206 (582)
Q Consensus 148 ~~~~~~~~-------~~~~~~~~~~~l~-~~~------~~~~~~~~~~~l~-~lgl~~~~~---~---~~~~~LSGGqrq 206 (582)
....+.+. .......++..+. +.. .......+..+.. .+++...+. + .....+||||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 11111110 1111222222222 110 1112222222221 133332211 1 234568999999
Q ss_pred HHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc---CcEEEE--EecCHHHHHhhcC
Q 007982 207 RIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF---DRILVV--ISHSQDFLNGVCT 264 (582)
Q Consensus 207 Rv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvii--vsHd~~~~~~~~d 264 (582)
|+++|. + | |+|||+.+...+.+.|.++ +.|+++ +||+++++...|+
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 987751 1 7 9999998877666666555 568775 8999999988874
No 255
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.99 E-value=8.8e-11 Score=121.08 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=87.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechH----HHHHHHHHHHHhc--cccCC-CcchHHHHHHHH
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDE----ERLKLEKEAEILG--AQEDG-GGEQLERVYERL 167 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~l 167 (582)
.++|++++|+||||||||||+++|+++..++.+.+.. ...+. ....+......++ +.... .......+++.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l-~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI-AASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE-EEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE-EeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3689999999999999999999999988776554321 11111 1111111222222 11111 111112222222
Q ss_pred HcCChhHHHHHHH-HHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcC
Q 007982 168 EALDASTAEKRAA-EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKFD 246 (582)
Q Consensus 168 ~~~~~~~~~~~~~-~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 246 (582)
.. .. ..... -+++..|..+ .....+.+|| .+++++..++.+++||.+|. .| ....+..+-+..+
T Consensus 205 ~~---~~-~~~~d~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~--~~~~~~~~~~~~~ 269 (328)
T 3e70_C 205 QH---AK-ARGIDVVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NA--IVEQARQFNEAVK 269 (328)
T ss_dssp HH---HH-HHTCSEEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-TH--HHHHHHHHHHHSC
T ss_pred HH---HH-hccchhhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HH--HHHHHHHHHHhcC
Confidence 10 00 00000 0122233321 1122233333 48999999999999996554 33 2333333334568
Q ss_pred cEEEEEecCH---------HHHHhhcCeEEEEeCCeE
Q 007982 247 RILVVISHSQ---------DFLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 247 ~tviivsHd~---------~~~~~~~d~i~~l~~G~i 274 (582)
.|+|++||.. ..+....-.|.++..|+-
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 8999999953 345556667888888764
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.98 E-value=1.9e-11 Score=124.10 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=33.0
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHH
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEA 234 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~ 234 (582)
.+...+||||+||+++|++...+|+|||+||||++||+..
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 3457899999999999843333999999999999999853
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.98 E-value=2.2e-12 Score=137.22 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=82.0
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee---ee----------chHH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV---IS----------CDEE 138 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~---i~----------~~~~ 138 (582)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|.++.+++.+.+... +. +...
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 35566677666666677777 53 7899999999999999999999998776654432110 00 0000
Q ss_pred H-HHHHHHHHHhccccCCCc-----chHHHHHHHH----Hc------CChhHHHHHHHHHHHhCCCChhhhhccCCCCCh
Q 007982 139 R-LKLEKEAEILGAQEDGGG-----EQLERVYERL----EA------LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSG 202 (582)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l----~~------~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 202 (582)
. ..+.........+.+... .....+...+ .. +...... .+...|..+|+... ..+..|||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHH---HHHHHEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHH---HHHHHHHH
Confidence 0 011111111111222210 0111222111 11 1111112 23335677888753 26789999
Q ss_pred hHHHHHHHHHHHhcCCCceee
Q 007982 203 GWRMRIALARALFINPTILLL 223 (582)
Q Consensus 203 GqrqRv~LAraL~~~P~lLlL 223 (582)
||+|| |||+|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
No 258
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=3.3e-10 Score=117.77 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=41.1
Q ss_pred HhcCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHHH-HhhcCeEEE
Q 007982 214 LFINPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDFL-NGVCTNIIH 268 (582)
Q Consensus 214 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~~-~~~~d~i~~ 268 (582)
+..+|+++|+|||++ ||+.+...|.+.|.+. +.++|++||+.+.+ ..+.+|+.+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~ 187 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLL 187 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEE
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceE
Confidence 788999999999999 9999999999999876 46899999996543 334445433
No 259
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.96 E-value=1.5e-11 Score=114.89 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=58.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH-HH-----HHHH-HHhc----cccCCCcchHHHHHHHH
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL-KL-----EKEA-EILG----AQEDGGGEQLERVYERL 167 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~-~~-----~~~~-~~~~----~~~~~~~~~~~~~~~~l 167 (582)
++++|+|+||||||||+++|.++..+.+.. .+.+.+++... .+ .... ..++ ...+..... +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~-~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~-------i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLR-VAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF-------I 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCC-EEEEEC------------CHHHHHHHHTCEEEEECSSEEEE-------E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCc-eEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE-------E
Confidence 589999999999999999999887664211 23333333221 11 0111 1222 111111000 0
Q ss_pred HcCChhHHHHHHHHHHHh-C-CCChhhhhccCCCCChhHHHHHHHHHHHhcCCCce
Q 007982 168 EALDASTAEKRAAEILYG-L-GFNKTMQAKKTRDFSGGWRMRIALARALFINPTIL 221 (582)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~-l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lL 221 (582)
...+ .+....+.+++.. + |++.. . ...|||||+||++||||++.+|++.
T Consensus 75 ~~~~-~~~~a~l~~~i~~~l~g~dt~-i---~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 75 RRVS-EEEGNDLDWIYERYLSDYDLV-I---TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp EECC-HHHHTCHHHHHHHHTTTCSEE-E---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ecCC-hhhhhCHHHHHHhhCCCCCEE-E---ECCcCCCCCcEEEEEecccCCCccC
Confidence 0000 0101134445444 3 44322 2 2349999999999999999999884
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=3.7e-12 Score=134.13 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=99.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhC------------CCCCCCcEEEEcCce------------eE---EEechhhhhh
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTG------------DLVPLDGMVRRHNHL------------RI---AQFHQHLAEK 442 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~G------------l~~p~~G~i~~~~~~------------~~---~~~~q~~~~~ 442 (582)
+..|.+++|+|+||||||||++.|+| ...|+.|.|...+.. .+ .++.+...
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 56899999999999999999999999 567888988775410 11 12222211
Q ss_pred cCCcccHHHHHHhcCCCChHHHHHHHHHh-------cCCCCccccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeCCC
Q 007982 443 LDMDMSALQYMIKEYPGNEEEKMRAAIGR-------FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQP--HMLLLDEPT 513 (582)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lLlLDEPt 513 (582)
+....+..+. . ...+...+.. +...+ ..++..+||+. +| +++++|||+
T Consensus 95 l~~~~s~~e~-------L-~~~fl~~ir~~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 95 LTKGASTGVG-------L-GNAFLSHVRAVDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp GCCCCCSSSS-------S-CHHHHHHHTTCSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHH
T ss_pred cccCCcHHHH-------H-HHHHHHHHHHHHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchhhh
Confidence 1111110000 0 0011111111 11111 23344566653 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhcCEEE-EEeCC-eEEEEcCCHHHH
Q 007982 514 NHLDIETIDSLAEALNEW----DGGLVLVSHDFRLINQVAHEIW-VCENQ-AVTRWEGDIMDF 570 (582)
Q Consensus 514 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~~~~ 570 (582)
.++|+.......+.+... +.|+ ++|+...+..+|+++. +|++| +++ +.|++.+-
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~~~ 211 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDWSNR 211 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCCCHH
Confidence 999999998888887765 3454 3999999999999999 89999 775 34655443
No 261
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.95 E-value=3e-10 Score=122.60 Aligned_cols=174 Identities=11% Similarity=0.089 Sum_probs=103.6
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEEEcCc-eeEEEechhh-hhhcCCcccHHHHHHhc-
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVRRHNH-LRIAQFHQHL-AEKLDMDMSALQYMIKE- 456 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~~~~~-~~~~~~~q~~-~~~~~~~~~~~~~~~~~- 456 (582)
..|+++...+.+|+++.|.|++|+|||||+..|++...+..| .|.+... .....+.+.+ ....... . ..+...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~--~-~~l~~g~ 267 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNIN--A-QNLRTGK 267 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCC--H-HHHHTSC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC--H-HHHhcCC
Confidence 457777778999999999999999999999999987665444 3322110 0000000000 0000111 0 111111
Q ss_pred CCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHHHHHHH
Q 007982 457 YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI--------ETIDSLAE 526 (582)
Q Consensus 457 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~--------~~~~~l~~ 526 (582)
....+..++.++++.++........+ ..+|.++.+ ..++.+. .+|+++|+|+++...+. .....+.+
T Consensus 268 l~~~~~~~~~~a~~~l~~~~l~i~d~-~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~ 344 (454)
T 2r6a_A 268 LTPEDWGKLTMAMGSLSNAGIYIDDT-PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISR 344 (454)
T ss_dssp CCHHHHHHHHHHHHHHHSSCEEEECC-TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHH
Confidence 11112234455555554433333333 579999987 4556555 68999999999998743 22234444
Q ss_pred HHH----hcCceEEEEec---------C--HH--------HHHhhcCEEEEEeCCeE
Q 007982 527 ALN----EWDGGLVLVSH---------D--FR--------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 527 ~l~----~~~~tvi~vsH---------d--~~--------~~~~~~d~i~~l~~G~i 560 (582)
.|+ +++.+||+++| | +. .+.+.||.|++|..+..
T Consensus 345 ~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 345 SLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 443 55789999999 3 22 57789999999986554
No 262
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.93 E-value=1.2e-10 Score=121.12 Aligned_cols=120 Identities=23% Similarity=0.143 Sum_probs=70.6
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC-CCCCceeeeeechHHHHHHHHHHHHhccccCC-CcchHHHHHH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA-SDMSSLEAVISCDEERLKLEKEAEILGAQEDG-GGEQLERVYE 165 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (582)
++++++. .+|++++|+||||||||||+|+|.|... +..+.+... .+.... ......+...+.. .......+.+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~---~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV---SGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc---CCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 4555554 3799999999999999999999999887 665443211 010000 0000011111111 0110111111
Q ss_pred -HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHH
Q 007982 166 -RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARAL 214 (582)
Q Consensus 166 -~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 214 (582)
.+..++.......+.++++.+|+.. +.++.+.+|| ||+||++||+++
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 0112344555667888999999974 5688999999 999999999875
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.92 E-value=1.1e-08 Score=100.28 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=41.4
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHHhcCceEEEEecCHHH--------HHhhcCEEEEEeC
Q 007982 502 RQPHMLLLDEPTNHL--DIETI----DSLAEALNEWDGGLVLVSHDFRL--------INQVAHEIWVCEN 557 (582)
Q Consensus 502 ~~p~lLlLDEPt~~L--D~~~~----~~l~~~l~~~~~tvi~vsHd~~~--------~~~~~d~i~~l~~ 557 (582)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++||.|+.++.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55333 23344455668899999998776 5688999999863
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.92 E-value=1.4e-09 Score=110.71 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=85.6
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccc
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQ 152 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 152 (582)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++...+..+.+. .+..+........
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~-l~~~d~~~~~~~~-------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL-LVAADTQRPAARE-------- 143 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE-EEECCSSCHHHHH--------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE-EecCCcccHhHHH--------
Confidence 55678888887543 788888 8999999999999999999999987765433321 1222211100000
Q ss_pred cCCCcchHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCC-CCCCC
Q 007982 153 EDGGGEQLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEP-TNHLD 231 (582)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEP-t~~LD 231 (582)
.+ ..+.+..|++- .. .....+-.+-+|.+|+++...+++++|+||| +.++|
T Consensus 144 -------------ql------------~~~~~~~~l~~-~~--~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d 195 (295)
T 1ls1_A 144 -------------QL------------RLLGEKVGVPV-LE--VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQID 195 (295)
T ss_dssp -------------HH------------HHHHHHHTCCE-EE--CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCC
T ss_pred -------------HH------------HHhcccCCeEE-EE--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccc
Confidence 00 00112234431 10 0011233455789999998899999999999 99999
Q ss_pred HHHHHHHHHHHhhc
Q 007982 232 LEACVWLEETLKKF 245 (582)
Q Consensus 232 ~~~~~~l~~~l~~~ 245 (582)
......+..+....
T Consensus 196 ~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 196 EPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 98888887776553
No 265
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.91 E-value=2.5e-12 Score=133.33 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=98.4
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCC-------cEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HH
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYG-------RRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LE 143 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~G-------e~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~ 143 (582)
.++.++++..|+...+++++++.+.+| +.++|+||||+|||||+++|++..........+.+........ ..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 466778888888888999999999887 8999999999999999999997652211111111112222111 10
Q ss_pred HHH--HHhccccCCC---cchHHHHHHHHHcCC------hhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 144 KEA--EILGAQEDGG---GEQLERVYERLEALD------ASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 144 ~~~--~~~~~~~~~~---~~~~~~~~~~l~~~~------~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
... ..+.+.++.. ....+.++..++... .......+...+..+++.. ..+.+..||+|++||+.++
T Consensus 98 ~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCSEE-
T ss_pred HHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcCce-
Confidence 000 0111111100 112222332232211 1122234455566676643 4567889999999998655
Q ss_pred HHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHHHhhcCe
Q 007982 213 ALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTN 265 (582)
Q Consensus 213 aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~~~~~d~ 265 (582)
.+||+.+...+.++|++.... .-++|+.+.+..+|++
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred ---------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 778887777777777653110 1147898888887765
No 266
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.91 E-value=4.6e-12 Score=129.87 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=53.7
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEE-------------------ecCCEEEEEcCCCCcHHHHHHHHhCCCC--CCCcE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGV-------------------DLDSRVALVGPNGAGKSTLLKLMTGDLV--PLDGM 423 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i-------------------~~Ge~~aivG~NGsGKSTLl~ll~Gl~~--p~~G~ 423 (582)
.+|++++|++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3578999999993 5889999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q 007982 424 VRR 426 (582)
Q Consensus 424 i~~ 426 (582)
|..
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 267
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.91 E-value=1.1e-08 Score=100.20 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.6
Q ss_pred cCCCceeecCCCCCC--CHHHH----HHHHHHHhhcCcEEEEEecCHHH--------HHhhcCeEEEEeC
Q 007982 216 INPTILLLDEPTNHL--DLEAC----VWLEETLKKFDRILVVISHSQDF--------LNGVCTNIIHMQN 271 (582)
Q Consensus 216 ~~P~lLlLDEPt~~L--D~~~~----~~l~~~l~~~~~tviivsHd~~~--------~~~~~d~i~~l~~ 271 (582)
.+|+++++|+|++.+ |+... ..+.+.+++.+.|||+++|.... +..+||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55322 23344455678899999998765 5678999999974
No 268
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.91 E-value=1.2e-10 Score=119.05 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=70.5
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc----------e-eEEEechhhhhh-cC--CcccHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH----------L-RIAQFHQHLAEK-LD--MDMSALQY 452 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~~--~~~~~~~~ 452 (582)
+-.|++++|+||||||||||+++|+ ++.|++|.|.. .+. . .+++++|.+... +. ...++ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999986 331 0 256776654211 01 12233 22
Q ss_pred HHh----------cC----C-CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHH
Q 007982 453 MIK----------EY----P-GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAW 498 (582)
Q Consensus 453 ~~~----------~~----~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAr 498 (582)
+.. .+ + ......+.++++.++|.....+.++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 210 01 1 1123568999999999863334456799998889999986
No 269
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.90 E-value=5.2e-10 Score=120.46 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=57.6
Q ss_pred CCCCChhHHHHHHHHHHHc--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHH
Q 007982 483 MKNLSDGQRSRVVFAWLAY--R---------------QPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLI 545 (582)
Q Consensus 483 ~~~LSgGqkqrv~lAral~--~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 545 (582)
.+.+||||+|-.-+|.+.+ + .-.+++|||. +-+|.+.+...++++++++-.+|+++=+ .+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i 453 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI 453 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence 5789999999754444432 2 2358999999 9999999999999999999999999988 56
Q ss_pred HhhcCEEEEEe
Q 007982 546 NQVAHEIWVCE 556 (582)
Q Consensus 546 ~~~~d~i~~l~ 556 (582)
..++|.++.+.
T Consensus 454 ~p~v~~~~~~~ 464 (483)
T 3euj_A 454 SPERGTTYKLV 464 (483)
T ss_dssp CCSSSEEEECC
T ss_pred hhccCceEEEE
Confidence 66788887653
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.87 E-value=8e-10 Score=112.81 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=72.9
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHc
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEA 169 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 169 (582)
.++|...+|++++|+|+|||||||++..|++...+.++.+. .+..+..+.. .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~-lv~~D~~r~~---------------------a------ 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV-LAAADTFRAA---------------------A------ 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EEEECTTCHH---------------------H------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE-EEccccccHH---------------------H------
Confidence 34666778999999999999999999999987765433221 1222211000 0
Q ss_pred CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHH---HHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 170 LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRI---ALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 170 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
.+.+..+++.+|++. +..+|||+.+++ +|++++..+|+++|+|||.. ......+++.|++
T Consensus 148 ------~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~ 210 (306)
T 1vma_A 148 ------IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRK 210 (306)
T ss_dssp ------HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHH
Confidence 011223344455531 236789999999 99999999999999999974 3334444444443
No 271
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.87 E-value=3.5e-10 Score=121.51 Aligned_cols=174 Identities=10% Similarity=0.075 Sum_probs=89.1
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHH----HHHH--HHHHhccccCCC-cchH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERL----KLEK--EAEILGAQEDGG-GEQL 160 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~--~~~~~~~~~~~~-~~~~ 160 (582)
-+++||++.+|++++|+|+||||||||+++|+++..++.+.+.. ...+..+. .+.. ....+.+..... ....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l-~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML-AAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE-ECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE-ecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 46899999999999999999999999999999988766554321 11111111 1111 112222221111 1111
Q ss_pred HHHHHHHHcCChhHHHHHHH-HHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh-cCCC-ceeecCCCCCCCHHHHHH
Q 007982 161 ERVYERLEALDASTAEKRAA-EILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF-INPT-ILLLDEPTNHLDLEACVW 237 (582)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~~-~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~-~~P~-lLlLDEPt~~LD~~~~~~ 237 (582)
..+++.+... . ..... -+++..|..... ...+.+| +|++.+++++. ..|. +||...||+|.|.. ..
T Consensus 362 ~tV~e~l~~a---~-~~~~DvVLIDTaGrl~~~-~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ 430 (503)
T 2yhs_A 362 SVIFDAIQAA---K-ARNIDVLIADTAGRLQNK-SHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQ 430 (503)
T ss_dssp HHHHHHHHHH---H-HTTCSEEEECCCCSCCCH-HHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HH
T ss_pred HHHHHHHHHH---H-hcCCCEEEEeCCCccchh-hhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HH
Confidence 2222222100 0 00000 012223332111 1122233 47888888764 4564 55555599886554 23
Q ss_pred HHHHHhhcCcEEEEEecCHH---------HHHhhcCeEEEEeCCe
Q 007982 238 LEETLKKFDRILVVISHSQD---------FLNGVCTNIIHMQNKQ 273 (582)
Q Consensus 238 l~~~l~~~~~tviivsHd~~---------~~~~~~d~i~~l~~G~ 273 (582)
+..+-...+.|.|++||--. .+..+.-.|.++..|.
T Consensus 431 ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 33333456789999999321 3333444566665553
No 272
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=1.4e-12 Score=135.34 Aligned_cols=161 Identities=22% Similarity=0.257 Sum_probs=97.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecC-------CEEEEEcCCCCcHHHHHHHHhCCC----CCCCcEEEEcC-------
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLD-------SRVALVGPNGAGKSTLLKLMTGDL----VPLDGMVRRHN------- 428 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~G-------e~~aivG~NGsGKSTLl~ll~Gl~----~p~~G~i~~~~------- 428 (582)
++.++++..|+ ...+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...+
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 34455555564 356888999999877 899999999999999999999988 66677654211
Q ss_pred ----ceeEEEechhhhhhcCCcccHHHHHHh---cCC-------CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHH
Q 007982 429 ----HLRIAQFHQHLAEKLDMDMSALQYMIK---EYP-------GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRV 494 (582)
Q Consensus 429 ----~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv 494 (582)
...+.++++... +. .+..+.+.. .+. ......+...+..+++.. .. .++..||+|++||+
T Consensus 98 ~~~~~~~v~~iDE~~~--l~--~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at-~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 98 TSLERGDVLFIDEIHR--LN--KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT-TRSGLLSSPLRSRF 171 (334)
T ss_dssp HHCCTTCEEEEETGGG--CC--HHHHHHHHHHHHTSCCCC---------------CCCEEEE-EE-SCGGGSCHHHHTTC
T ss_pred HHccCCCEEEEcchhh--cC--HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec-CCcccCCHHHHHhc
Confidence 123566665421 11 133333221 111 111233445566677654 33 34579999999998
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhcCE
Q 007982 495 VFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHE 551 (582)
Q Consensus 495 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~ 551 (582)
.++ .+||+.+.+.+.+.|++.... .-++|+.+.+..+|++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAKR 211 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHT
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHh
Confidence 654 778888887777777654210 1147888877777764
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.85 E-value=3e-12 Score=129.02 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=81.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCcee-----------EEEechhhhhhcCCccc
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLR-----------IAQFHQHLAEKLDMDMS 448 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~-----------~~~~~q~~~~~~~~~~~ 448 (582)
..+|++++|.+..| ++|+||||||||||+++|+|.+.+ |.|...+... +++++|... ...+..+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 34788899999999 999999999999999999999877 5666544211 111122110 0011111
Q ss_pred HHHHHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC------------CC
Q 007982 449 ALQYMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN------------HL 516 (582)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~------------~L 516 (582)
+.+.+........... .+ .+... ....+.+|||||+||++|++++.++|++| |||+. --
T Consensus 108 ~~Deid~~~~~r~~~~----~~--~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDALCPRRSDRE----TG--ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTTCC---------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhhhcccCCCc----ch--HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 1111110000000000 00 01111 12334689999999999999999999985 99974 23
Q ss_pred CHHHHHHHHHHHHh
Q 007982 517 DIETIDSLAEALNE 530 (582)
Q Consensus 517 D~~~~~~l~~~l~~ 530 (582)
|...+..|.+.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 56777777776643
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.85 E-value=3.2e-09 Score=107.93 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=82.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHH
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTA 175 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 175 (582)
.+|++++|+|+|||||||++..|++...++.|.--..+..+..+. ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~-----------------~a~--------------- 150 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI-----------------AAV--------------- 150 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST-----------------THH---------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc-----------------hHH---------------
Confidence 479999999999999999999999877643231111222221100 000
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc-----CcEEE
Q 007982 176 EKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-----DRILV 250 (582)
Q Consensus 176 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi 250 (582)
+....+.+.+|++.. . ..+ +...+.+|++ +.+|+++|+| |+|+|+.....+.++.+-. ..+++
T Consensus 151 -eqL~~~~~~~gl~~~-~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~l 218 (296)
T 2px0_A 151 -EQLKTYAELLQAPLE-V-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFL 218 (296)
T ss_dssp -HHHHHHHTTTTCCCC-B-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEE
T ss_pred -HHHHHHHHhcCCCeE-e-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEE
Confidence 011112233444311 0 112 3345666665 4999999999 8999987665544433221 12344
Q ss_pred EE--ecCHHHHHhhcCeEEEEeCCeEEE
Q 007982 251 VI--SHSQDFLNGVCTNIIHMQNKQLKF 276 (582)
Q Consensus 251 iv--sHd~~~~~~~~d~i~~l~~G~i~~ 276 (582)
++ +|+.+.+.++|+++..+..+.++.
T Consensus 219 Vl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 219 VLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred EEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 55 999999999999887777677754
No 275
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.79 E-value=8.5e-09 Score=111.21 Aligned_cols=177 Identities=9% Similarity=0.016 Sum_probs=100.3
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeee--chHHHHHHHHHHHHhccccCCCcchHHH
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVIS--CDEERLKLEKEAEILGAQEDGGGEQLER 162 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (582)
...|+++..-+.+|+++.|.|++|+|||||+..|+.......+.-...+. ........+-........ ...
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~-------~~~ 262 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNIN-------AQN 262 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCC-------HHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC-------HHH
Confidence 34678887789999999999999999999999887543321110011112 112111111000111100 001
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHh--cCCCceeecCCCCCCCH--------
Q 007982 163 VYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALF--INPTILLLDEPTNHLDL-------- 232 (582)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~--~~P~lLlLDEPt~~LD~-------- 232 (582)
+. -..+... ...++.+.+..++...... .....+|.++.+ +.++.+. .+|+++|+|+++...+.
T Consensus 263 l~--~g~l~~~-~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 263 LR--TGKLTPE-DWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp HH--TSCCCHH-HHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred Hh--cCCCCHH-HHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 10 0011111 1223344444333222122 235689999887 5566665 68999999999998743
Q ss_pred HHHHHHHHHH----hhcCcEEEEEec---------C--HH--------HHHhhcCeEEEEeCCeE
Q 007982 233 EACVWLEETL----KKFDRILVVISH---------S--QD--------FLNGVCTNIIHMQNKQL 274 (582)
Q Consensus 233 ~~~~~l~~~l----~~~~~tviivsH---------d--~~--------~~~~~~d~i~~l~~G~i 274 (582)
.....+...| ++++.+||+++| | +. .+...||.|++|..+..
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2223444444 356889999999 3 22 57789999999987654
No 276
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.79 E-value=7.1e-12 Score=126.30 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-e-e-chHH-HHHHHHHHHHhccccCCCcc
Q 007982 83 HGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-I-S-CDEE-RLKLEKEAEILGAQEDGGGE 158 (582)
Q Consensus 83 ~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-i-~-~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (582)
....+|++++|.+++| ++|+||||||||||+++|++...+..-.+.+. + . +.+. ...+....+... ...+...
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 3456789999999999 99999999999999999998655421000000 0 0 0011 001111111000 0000000
Q ss_pred hHHHHHHHHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC----------
Q 007982 159 QLERVYERLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTN---------- 228 (582)
Q Consensus 159 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~---------- 228 (582)
.++++ ..+........ .+......++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 108 ~~Dei----d~~~~~r~~~~-------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 108 FFDEV----DALCPRRSDRE-------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EEETC----TTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eeehh----hhhhcccCCCc-------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 00000 00000000000 011123446677899999999999999999999986 99864
Q ss_pred --CCCHHHHHHHHHHHhh
Q 007982 229 --HLDLEACVWLEETLKK 244 (582)
Q Consensus 229 --~LD~~~~~~l~~~l~~ 244 (582)
-.|...+..+++.+.+
T Consensus 175 ~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 175 VGLPPPADRLAILKTITK 192 (274)
T ss_dssp CCSCCHHHHHHHHHHHTT
T ss_pred eCCcCHHHHHHHHHHHHh
Confidence 3467888888776643
No 277
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.76 E-value=3.2e-09 Score=122.28 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=29.4
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.++.+.++..+.|+||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366788999999999999999999999998764
No 278
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=1.3e-10 Score=122.27 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCC--CceeecCCCCCCCHHHHHHHHHHHhhc----CcEEEEEecCHHHHHhhcCeEE-
Q 007982 195 KKTRDFSGGWRMRIALARALFINP--TILLLDEPTNHLDLEACVWLEETLKKF----DRILVVISHSQDFLNGVCTNII- 267 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tviivsHd~~~~~~~~d~i~- 267 (582)
..+..+||+. +| +++++|||++.+|+.......+.+... +.|+ ++|+...+..+|+++.
T Consensus 129 ~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~ 194 (392)
T 1ni3_A 129 AEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQ 194 (392)
T ss_dssp TCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHH
T ss_pred ceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHH
Confidence 4455577764 99 999999999999999998888887765 3454 3999999999999999
Q ss_pred EEeCC-eEEEEcCChh
Q 007982 268 HMQNK-QLKFYTGNFD 282 (582)
Q Consensus 268 ~l~~G-~i~~~~g~~~ 282 (582)
+|++| +++ +.|+++
T Consensus 195 ~L~~G~~~~-~~~~~~ 209 (392)
T 1ni3_A 195 YLTETKQPI-RKGDWS 209 (392)
T ss_dssp HHHTTCSCG-GGSCCC
T ss_pred HhccCCcee-ecCCCC
Confidence 99999 775 335543
No 279
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.74 E-value=7.3e-10 Score=120.18 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=96.2
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhc--CCCCCCCceeee-eechHHHHHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGE--IEASDMSSLEAV-ISCDEERLKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~--~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
.+++++.++..+.|.|++||||||++++|.. +...+.+.+... +......... ...+.................
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---YEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---GTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---hccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999853 222222222211 1111111100 000000000011112222222
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhh--hhccCCCCChhHHHHH----------HHHHHHhcCCC-ceeecCCCCCCCHH
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTM--QAKKTRDFSGGWRMRI----------ALARALFINPT-ILLLDEPTNHLDLE 233 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~--~~~~~~~LSGGqrqRv----------~LAraL~~~P~-lLlLDEPt~~LD~~ 233 (582)
+.. ...+++.|. +++..+|+.+.. ..+....+||||+|+. .+|+++...|. ++++||+++.+|..
T Consensus 236 L~~-~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~ 313 (512)
T 2ius_A 236 LRW-CVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV 313 (512)
T ss_dssp HHH-HHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred HHH-HHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence 221 123455564 678888875321 1122346899998763 35667778898 89999999988832
Q ss_pred HHHHHHHHH-------hhcCcEEEEEecCHH-------HHHhhcCeEEE
Q 007982 234 ACVWLEETL-------KKFDRILVVISHSQD-------FLNGVCTNIIH 268 (582)
Q Consensus 234 ~~~~l~~~l-------~~~~~tviivsHd~~-------~~~~~~d~i~~ 268 (582)
. ..+.+.| +.+|.++|++||+++ ...++.+||.+
T Consensus 314 ~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 314 G-KKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp H-HHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred h-HHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 2 2233322 234679999999987 45566666654
No 280
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.74 E-value=2.7e-10 Score=123.49 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=95.7
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhC--CCCCCCcEEEEcC---ce-eEEEechhhhhhcC-CcccH---HHHHH
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVRRHN---HL-RIAQFHQHLAEKLD-MDMSA---LQYMI 454 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p~~G~i~~~~---~~-~~~~~~q~~~~~~~-~~~~~---~~~~~ 454 (582)
.+++++..+..+.|+|++||||||+++.|.. ++.++.|.+.... .. ....+. .+.+... .-... ...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-~lPhl~~~Vvtd~~~a~~~L- 236 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-GIPHLLTEVVTDMKDAANAL- 236 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-TCTTBSSSCBCSHHHHHHHH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-cCCcccceeecCHHHHHHHH-
Confidence 3678888999999999999999999999876 5555556664321 10 000000 0001000 00011 1111
Q ss_pred hcCCCChHHHHHHHHHhcCCCCcccc--CCCCCCChhHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHHH-
Q 007982 455 KEYPGNEEEKMRAAIGRFGLTGKAQV--MPMKNLSDGQRSRV----------VFAWLAYRQPH-MLLLDEPTNHLDIET- 520 (582)
Q Consensus 455 ~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~~LSgGqkqrv----------~lAral~~~p~-lLlLDEPt~~LD~~~- 520 (582)
........++ .+++..+|+.+.... .....+|+||+|+. .+|+++...|. ++++||++..+|...
T Consensus 237 ~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 237 RWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 1000111222 367888888653221 11135889987753 34566677898 899999999988432
Q ss_pred -HHHHHHHH----HhcCceEEEEecCHH-------HHHhhcCEEEE
Q 007982 521 -IDSLAEAL----NEWDGGLVLVSHDFR-------LINQVAHEIWV 554 (582)
Q Consensus 521 -~~~l~~~l----~~~~~tvi~vsHd~~-------~~~~~~d~i~~ 554 (582)
...+...| +++|.++|++||++. ...++..||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 12222222 234668999999987 56677778765
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=7.9e-10 Score=112.80 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=57.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc-----------eeEEEechhhhh-------------
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH-----------LRIAQFHQHLAE------------- 441 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~-----------~~~~~~~q~~~~------------- 441 (582)
++..|++++|+||||||||||+++|+|+..|++|.|.. .+. ..+++++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999986 321 024666665421
Q ss_pred -hcCCcccHHHHHHhc---CCCChHHHHHHHHHhcCCCCccccCCCCCCCh
Q 007982 442 -KLDMDMSALQYMIKE---YPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSD 488 (582)
Q Consensus 442 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 488 (582)
.+.+..++ +++... .......++.++|+.+||.....++.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 12223333 332211 01122356889999999963322333467774
No 282
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.66 E-value=1e-08 Score=110.35 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=42.3
Q ss_pred EeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 75 v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
+.+++.. +..+|+++||+|++ ++++|+|||||||||||++|+|+.+|+.|.
T Consensus 9 l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 9 FRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp EEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred eeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 4444432 35679999999999 999999999999999999999988776554
No 283
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.65 E-value=6.5e-09 Score=101.51 Aligned_cols=178 Identities=11% Similarity=0.090 Sum_probs=71.1
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHh-CCC------------CCCCcEEEEcCceeEEEechhhhhhcCCcc
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-GDL------------VPLDGMVRRHNHLRIAQFHQHLAEKLDMDM 447 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~-Gl~------------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~ 447 (582)
....++||++.+|++++|+||||||||||+++|+ |++ +|..|.+ .+ ..|.++.... + ...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g---~~~~~~~~~~-~-~~~ 87 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG---KDYYFVDREE-F-LRL 87 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT---TTBEECCHHH-H-HHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC---CeEEEecHHH-h-hhh
Confidence 3567899999999999999999999999999999 998 4444433 11 1122221110 0 000
Q ss_pred cHHHHHH------hcCCCChHHHHHHHHHhcCCCCccccCCCCCCChh--HHHHH-HHH-HHHccCCCEEEEeCCCCCCC
Q 007982 448 SALQYMI------KEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDG--QRSRV-VFA-WLAYRQPHMLLLDEPTNHLD 517 (582)
Q Consensus 448 ~~~~~~~------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG--qkqrv-~lA-ral~~~p~lLlLDEPt~~LD 517 (582)
+..+.+. ..........+.++++.-.. .....+ +.|- -++++ .-+ ..++..|+..+|+|++...|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~---~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~ 162 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVID---WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR 162 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECC---HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred hhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcC---HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence 0000000 00000011223444433211 011111 1111 12322 111 22356778888899999998
Q ss_pred HHHHHHHHHHHHh----c----CceEEEEecCHHHHHhhcCEEEEEeCCeEEEEcCCHHHHH
Q 007982 518 IETIDSLAEALNE----W----DGGLVLVSHDFRLINQVAHEIWVCENQAVTRWEGDIMDFK 571 (582)
Q Consensus 518 ~~~~~~l~~~l~~----~----~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 571 (582)
..+.+.+.+.|.. . ...+|+++||++.+.+-+++++....++.. ..++..++.
T Consensus 163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~ 223 (231)
T 3lnc_A 163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELL 223 (231)
T ss_dssp ---------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHh
Confidence 7776655544432 1 236888899988877766666544444432 234444444
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=1.3e-08 Score=96.21 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 492 SRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 492 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
+.+.+|++++.+|+++++| ||++|..++..+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4477899999999999999 999999999999888754
No 285
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.64 E-value=1e-07 Score=99.01 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=82.2
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+++.|.||||||||||+..++.......|.+. |+.... ... .. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl--------yi~~E~----~~~---------------~~----~ 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA--------FIDAEH----ALD---------------PE----Y 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE--------EEESSC----CCC---------------HH----H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE--------EEECCC----CcC---------------HH----H
Confidence 4789999999999999999998888765443333332 222110 000 00 1
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHcc--CCCEEEEeCCCCCC----------CH----HH---HHHHHH-
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAYR--QPHMLLLDEPTNHL----------DI----ET---IDSLAE- 526 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~~--~p~lLlLDEPt~~L----------D~----~~---~~~l~~- 526 (582)
..++|+... ....+ .+.. +-+.++++++. +|+++|+|||++.+ |. .. ...+.+
T Consensus 106 a~~lG~~~~~l~i~~~---~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L 180 (349)
T 2zr9_A 106 AKKLGVDTDSLLVSQP---DTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKM 180 (349)
T ss_dssp HHHTTCCGGGCEEECC---SSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHeEEecC---CCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHH
Confidence 233444311 11112 2333 34567777765 49999999999998 32 11 122222
Q ss_pred --HHHhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCeEE
Q 007982 527 --ALNEWDGGLVLVSHDFR----------------LINQVAHEIWVCENQAVT 561 (582)
Q Consensus 527 --~l~~~~~tvi~vsHd~~----------------~~~~~~d~i~~l~~G~i~ 561 (582)
.+++++.+||+++|-.. .+..+||.++.+..+++.
T Consensus 181 ~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 181 TGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 23566889999999653 256789999888766554
No 286
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=2e-09 Score=109.72 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=55.4
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE---cCc--------e--eEEEechhhhhhc-CC-cccHHHHHH
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR---HNH--------L--RIAQFHQHLAEKL-DM-DMSALQYMI 454 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~---~~~--------~--~~~~~~q~~~~~~-~~-~~~~~~~~~ 454 (582)
+.+|++++|+||||||||||+++|+|+..|.+|.|.. .+. . ..+++.|.+.... .+ ..++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999975 221 0 1466766542111 11 2333 3321
Q ss_pred hc------------CC-----CChHHHHHHHHHhcCCCCccccCCCCCCChhHHHH
Q 007982 455 KE------------YP-----GNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSR 493 (582)
Q Consensus 455 ~~------------~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqr 493 (582)
.. +. ......+.++++.++|........ ..|+.|++||
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-~~lls~~~~~ 303 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-VEFMTEIKDR 303 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-HHHHHHHhhc
Confidence 10 11 112346889999999976433333 4677787763
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.58 E-value=2.4e-08 Score=95.51 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 474 (582)
+++|+|+|||||||+.++|+++ |...... ..+...+. .+ ....+.++.+.+|.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~------------~~--~~~~~~~i~~~~g~ 56 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV------------AK--DSPLLSKIVEHFGA 56 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT------------CS--SCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc------------cC--ChHHHHHHHHHhCH
Confidence 6899999999999999999983 3222111 01100000 01 11234566667775
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecCHHHH--HhhcCE
Q 007982 475 TGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEW-DGGLVLVSHDFRLI--NQVAHE 551 (582)
Q Consensus 475 ~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~--~~~~d~ 551 (582)
.. -.|.|+.+|..++..+..+|..+.++ ++.++|.....+.+.+... +.+||+.+|.+.+. ...||.
T Consensus 57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~ 126 (206)
T 1jjv_A 57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR 126 (206)
T ss_dssp TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence 32 13678999999999988888654333 3456677777777777654 45788888987665 678999
Q ss_pred EEEEe
Q 007982 552 IWVCE 556 (582)
Q Consensus 552 i~~l~ 556 (582)
+++++
T Consensus 127 vi~l~ 131 (206)
T 1jjv_A 127 ILVVD 131 (206)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
No 288
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.57 E-value=1.4e-07 Score=98.09 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcC--CCceeecCCCCCC----------CH----HH---HHHHHH---HHhhcCcEEEEEecCHH------
Q 007982 206 MRIALARALFIN--PTILLLDEPTNHL----------DL----EA---CVWLEE---TLKKFDRILVVISHSQD------ 257 (582)
Q Consensus 206 qRv~LAraL~~~--P~lLlLDEPt~~L----------D~----~~---~~~l~~---~l~~~~~tviivsHd~~------ 257 (582)
+-+.++++++.+ |+++|+|||++.+ |+ .. ...+.+ .+++++.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888755 9999999999998 32 11 122222 23667899999999643
Q ss_pred ----------HHHhhcCeEEEEeCCeEE
Q 007982 258 ----------FLNGVCTNIIHMQNKQLK 275 (582)
Q Consensus 258 ----------~~~~~~d~i~~l~~G~i~ 275 (582)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 256789999999877654
No 289
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.57 E-value=3.5e-09 Score=104.91 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=35.8
Q ss_pred ceEEeee-EEEE-CCeeeeEeeeEEEeC---CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 72 DIRIESL-SVTF-HGHDLIVDSELELNY---GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 72 ~i~v~nl-s~~y-~~~~il~~vsl~i~~---Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+|+++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7999999 9999 778899999999999 9999999999999999999998643
No 290
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.54 E-value=4.5e-09 Score=104.14 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCeEEEEEE-EEEecCCceeeEeeeEEEec---CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 364 PPVLQFVEV-TFGYTPDNLIYKNLDFGVDL---DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 364 ~~~l~~~~l-~~~y~~~~~~l~~vsl~i~~---Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.++|+++|+ +|+|.+...+|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99994346799999999999 9999999999999999999999855
No 291
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.53 E-value=2.4e-08 Score=111.61 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred CceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCC-cEEEEcC------ceeEEEechhhhhhcCC------
Q 007982 379 DNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLD-GMVRRHN------HLRIAQFHQHLAEKLDM------ 445 (582)
Q Consensus 379 ~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~-G~i~~~~------~~~~~~~~q~~~~~~~~------ 445 (582)
...+++++++.+..|+.++|+||||+|||||+++|++++.+.. |.+...+ ...+.++++.....+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~ 125 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKA 125 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhh
Confidence 4568899999999999999999999999999999999999887 5554432 12355554332110000
Q ss_pred --------------cccHHHHHH-hcCCC-------ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccC
Q 007982 446 --------------DMSALQYMI-KEYPG-------NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQ 503 (582)
Q Consensus 446 --------------~~~~~~~~~-~~~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~ 503 (582)
..+...++. ..... ........+++.+.... ...+.+|+|++|++..++....+
T Consensus 126 ~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~----~~~g~~~~g~~~~i~~g~~~~a~ 201 (604)
T 3k1j_A 126 KSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP----FQSGGLGTPAHERVEPGMIHRAH 201 (604)
T ss_dssp HHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC----C----CCCCGGGGEECCHHHHTT
T ss_pred ccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech----hhcCCccccccccccCceeeecC
Confidence 000000000 00000 00011223333332211 11257999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 504 PHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 504 p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
+.+|+|||... |++.....|.+.|.+
T Consensus 202 ~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 202 KGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999988 899999999999974
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.51 E-value=1.2e-05 Score=97.78 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=76.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+.+.|.||+|+|||||+..++.......|. +.|+.-... ... . .
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~--------VlyiS~Ees------~~q---------------l--~ 776 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEHA------LDP---------------I--Y 776 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--------EEEECTTSC------CCH---------------H--H
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC--------eEEEeccch------HHH---------------H--H
Confidence 38999999999999999999999988765433232 223221100 000 0 0
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCC-HH------------HHHHH-------
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLD-IE------------TIDSL------- 524 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD-~~------------~~~~l------- 524 (582)
..++|+... ....+ . +. + +-...++.++ .+|+++++|+.+.-.. .+ ....+
T Consensus 777 A~~lGvd~~~L~i~~~-~--~l-e-ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~L 851 (1706)
T 3cmw_A 777 ARKLGVDIDNLLCSQP-D--TG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 851 (1706)
T ss_dssp HHHTTCCGGGCEEECC-S--SH-H-HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHcCCChhheEEecC-C--cH-H-HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHH
Confidence 223343211 11111 1 22 2 3344444443 5899999999987652 10 11122
Q ss_pred HHHHHhcCceEEEEecC----------------HHHHHhhcCEEEEEeC
Q 007982 525 AEALNEWDGGLVLVSHD----------------FRLINQVAHEIWVCEN 557 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd----------------~~~~~~~~d~i~~l~~ 557 (582)
...+++++.+||+++|- -..+.+.||-++.+..
T Consensus 852 k~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 852 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 900 (1706)
T ss_dssp HHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEe
Confidence 22345678899999882 1246778898888853
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.50 E-value=3e-08 Score=96.76 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=22.9
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-cCCC
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG-EIEA 123 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~-~~~~ 123 (582)
+...++||++++|++++|+||||||||||+++|+ ++.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999 8863
No 294
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.50 E-value=1.8e-09 Score=110.59 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEE-------------------eCCcEEEEECCCCCcHHHHHHHHhcCCC--CCCCc
Q 007982 72 DIRIESLSVTFHGHDLIVDSELEL-------------------NYGRRYGLLGLNGCGKSTLLTAIGEIEA--SDMSS 128 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i-------------------~~Ge~~~LvG~NGsGKSTLl~~l~~~~~--~~~~~ 128 (582)
+|+++||++.|+ +++++++|.+ .+|+++||+||||||||||+++|+++.. ++.+.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 688999999994 7899999988 8999999999999999999999999766 55544
No 295
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.47 E-value=3.3e-09 Score=103.51 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=41.9
Q ss_pred eEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 366 VLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
.|+++|+...|. . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+.+
T Consensus 9 ~l~l~~~~~~~~-------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE-------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC-------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 578888765442 1 566666 89999999999999999999999999999886543
No 296
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.47 E-value=2.8e-10 Score=114.64 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=42.4
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++.+.|++..++++++|.+++| ++|+||||||||||+++|++...
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34567777787778899999999999 99999999999999999997654
No 297
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.45 E-value=6e-10 Score=116.83 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=76.7
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC-c-----eeEEEechhhhhhcCCcccHHHHHH
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN-H-----LRIAQFHQHLAEKLDMDMSALQYMI 454 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~-~-----~~~~~~~q~~~~~~~~~~~~~~~~~ 454 (582)
.+++++++++.+|++++|+||||||||||+++|+|.+ .|.+.... . ..+++++|.+.. +..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHH
Confidence 5789999999999999999999999999999999853 57765411 0 012222222110 000000000000
Q ss_pred hcCCCCh----HHHHHHHHH---------------hcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEE-EeCCCC
Q 007982 455 KEYPGNE----EEKMRAAIG---------------RFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLL-LDEPTN 514 (582)
Q Consensus 455 ~~~~~~~----~~~~~~~l~---------------~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLl-LDEPt~ 514 (582)
....... ...+...+. ..-+...........+++|.++|+..+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000000 122333442 11111112223456799999999998888889999998 999997
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.44 E-value=7e-08 Score=91.83 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=26.4
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
|+++.+|++++|+||||||||||+++|+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 67888999999999999999999999998764
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.42 E-value=1.8e-07 Score=89.29 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA 179 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (582)
+++|+|+|||||||+.++|+++-. ..+..+. . ...+.. ... ..+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~-------~~id~d~--~-----~~~~~~---~~~-------------------~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGV-------PLVDADV--V-----AREVVA---KDS-------------------PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTC-------CEEEHHH--H-----HHHTTC---SSC-------------------HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC-------cccchHH--H-----HHHHcc---CCh-------------------HHH
Confidence 689999999999999999988311 1122111 1 001100 000 112
Q ss_pred HHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhc-CcEEEEEecCHHH
Q 007982 180 AEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKKF-DRILVVISHSQDF 258 (582)
Q Consensus 180 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tviivsHd~~~ 258 (582)
.++.+.+|.. . -.+.|+.+|..+++.++.+|..+..+ ++.++|..+..+.+.+... +.++|+.+|.+.+
T Consensus 48 ~~i~~~~g~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e 117 (206)
T 1jjv_A 48 SKIVEHFGAQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIE 117 (206)
T ss_dssp HHHHHHHCTT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTT
T ss_pred HHHHHHhCHH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhh
Confidence 3344444432 1 13678999999999999998766554 3456777777777777654 4578888898766
Q ss_pred H--HhhcCeEEEEe
Q 007982 259 L--NGVCTNIIHMQ 270 (582)
Q Consensus 259 ~--~~~~d~i~~l~ 270 (582)
. ...||.+++++
T Consensus 118 ~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 118 NKLTALCDRILVVD 131 (206)
T ss_dssp TTCGGGCSEEEEEE
T ss_pred cCcHhhCCEEEEEE
Confidence 4 67899988885
No 300
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.42 E-value=1.4e-07 Score=88.05 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=35.4
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~ 423 (582)
++++|.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6889999998 99999999999999999999988877664
No 301
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.42 E-value=7.5e-08 Score=91.62 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=26.7
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.41 E-value=4.9e-09 Score=106.93 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=66.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHH-HHH--HHHHhc--cccCC--------CcchH
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLK-LEK--EAEILG--AQEDG--------GGEQL 160 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~--~~~~~--------~~~~~ 160 (582)
++..|++++|+||||||||||+|+|. +..++.|.+..... .+.... ... ....++ ++.+. ....
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~-~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTE-RGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccC-CCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34469999999999999999999999 87776554432000 111000 000 000011 11110 0011
Q ss_pred HHH---HH-------HHHc-CChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHH
Q 007982 161 ERV---YE-------RLEA-LDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALAR 212 (582)
Q Consensus 161 ~~~---~~-------~l~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 212 (582)
+++ +. .+.. ....+...++.++++.++|.....++++..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 10 0111 1222334578999999999864678899999999999999986
No 303
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.41 E-value=1.8e-07 Score=88.73 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=30.3
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 007982 494 VVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNE 530 (582)
Q Consensus 494 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 530 (582)
...|++++.+|+++++| |+++|...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999888877654
No 304
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=2.2e-07 Score=106.52 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=58.5
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeecCCCC-CCCHHHHHHHHHHHhhc---CcEEEE-EecCHHHHHhhcCeEEEE
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLDEPTN-HLDLEACVWLEETLKKF---DRILVV-ISHSQDFLNGVCTNIIHM 269 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvii-vsHd~~~~~~~~d~i~~l 269 (582)
..+.-+|.|+.+|..++++++.++++||+|||.. +||......++..+... ..+|++ .||+.+.+..+++...++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi 265 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLL 265 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEE
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcc
Confidence 4567789999999999999999999999999997 99987766555555433 246666 499988888888754333
No 305
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.36 E-value=3.2e-07 Score=105.09 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhc--C-ceEEE-EecCHHHHHhhcCE
Q 007982 482 PMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETIDSLAEALNEW--D-GGLVL-VSHDFRLINQVAHE 551 (582)
Q Consensus 482 ~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~--~-~tvi~-vsHd~~~~~~~~d~ 551 (582)
.+.-+|+|+.+|..+++.++.++++||+|||.. +||......+.+.+... . .+|++ +|||.+.+.++++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 355789999999999999999999999999996 99988766665555443 2 35666 49998888887764
No 306
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.35 E-value=2.2e-07 Score=100.31 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
..+.++++.++.| +.|+||+|+|||||+++|++..... .+.+....
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~------f~~is~~~-------------------------- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP------FFHISGSD-------------------------- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC------EEEEEGGG--------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC------eeeCCHHH--------------------------
Confidence 3556667777777 8899999999999999998632110 01110000
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC----------CCCCHHHH
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT----------NHLDLEAC 235 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt----------~~LD~~~~ 235 (582)
+....++ +|++++|..+++|....|.||++||+. ++.|....
T Consensus 85 --------------------------~~~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~ 136 (476)
T 2ce7_A 85 --------------------------FVELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDERE 136 (476)
T ss_dssp --------------------------TTTCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHH
T ss_pred --------------------------HHHHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHH
Confidence 0000000 267888999999999999999999994 46676655
Q ss_pred HHHHHHHhhc-------CcEEEEEecCHHHHH
Q 007982 236 VWLEETLKKF-------DRILVVISHSQDFLN 260 (582)
Q Consensus 236 ~~l~~~l~~~-------~~tviivsHd~~~~~ 260 (582)
..+.++|..+ +..||.+||+.+.+.
T Consensus 137 ~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 137 QTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 5555555322 457899999987654
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.34 E-value=2.9e-07 Score=85.99 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred eee--EeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 86 DLI--VDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 86 ~il--~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
..+ ++++|++.+| +++|+||||||||||+++|.++..+
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 345 6789999999 9999999999999999999865443
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.33 E-value=3.2e-07 Score=98.95 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=70.5
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
.+.++++.++.| +.|+||+|+|||||++.|++.... .+.++.. .... ..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~--~~~~-----------~~~---- 89 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISG--SDFV-----------ELF---- 89 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEG--GGTT-----------TCC----
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCH--HHHH-----------HHH----
Confidence 455566666666 789999999999999999985310 0111100 0000 000
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCCHHHHHHHHHHHHhc
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEP----------TNHLDIETIDSLAEALNEW 531 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~~ 531 (582)
. =+|+++.|..|++|....|.+|++||+ +++.|.+....+.+++..+
T Consensus 90 ---------------------~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 90 ---------------------V--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp ---------------------T--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred ---------------------h--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 0 026788999999999999999999999 4467776655555555432
Q ss_pred -------CceEEEEecCHHHH
Q 007982 532 -------DGGLVLVSHDFRLI 545 (582)
Q Consensus 532 -------~~tvi~vsHd~~~~ 545 (582)
+..||.+||+.+.+
T Consensus 147 d~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGS
T ss_pred hccCCCCCEEEEEecCChhhh
Confidence 34688899998655
No 309
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.31 E-value=2e-08 Score=97.97 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=40.9
Q ss_pred cceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 71 RDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 71 ~~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
..|+++|++..|+. +|+|.+ ++++|+|||||||||||++|+++..++.+.
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 36889998776642 466666 899999999999999999999998887553
No 310
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.30 E-value=5.6e-07 Score=93.82 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=75.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc-CceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhc
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH-NHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF 472 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (582)
-.++|+|+||+|||||++.|+|.. +..|..... ....++.+.+.. .. -.+++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~---~~---------------------~~l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY---FR---------------------YQIIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT---EE---------------------EEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC---ce---------------------EEEEeCC
Confidence 478999999999999999999975 211111000 001111111110 00 0011122
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cCHH
Q 007982 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD-EPTNHLDIETIDSLAEALNE-W-DGGLVLVS--HDFR 543 (582)
Q Consensus 473 gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~ 543 (582)
|+. . .++..+|+|++|++. +.+...++-|+++| +|+.++|......+...+.. . +..+|+|. ||+.
T Consensus 223 G~~---~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 223 GLL---D-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTS---S-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred Ccc---c-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 322 1 345689999998776 55555777889999 99999999988777776655 3 56788888 8874
No 311
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.29 E-value=2.8e-07 Score=102.94 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=91.0
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeee-----------eec--hHHHHHH
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAV-----------ISC--DEERLKL 142 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~-----------i~~--~~~~~~~ 142 (582)
++++..|+...+++++++.+..|+.++|+||||||||||+++|+++.++........ +.+ ......+
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 455556788889999999999999999999999999999999998876543110000 000 0000000
Q ss_pred HHHHHH-hccccCCCcchHHHHHHHHHcC-----------Ch---hHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHH
Q 007982 143 EKEAEI-LGAQEDGGGEQLERVYERLEAL-----------DA---STAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMR 207 (582)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-----------~~---~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 207 (582)
...... ....... .....+...+... .. ........+++..+... ......+|+|++|+
T Consensus 118 ~e~~~~~~~~~~~~--r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~~ 191 (604)
T 3k1j_A 118 VEKYREKAKSQESV--KSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHHHHTCC-------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGGG
T ss_pred HHHHHHhhccchhh--hhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCcccccccc
Confidence 000000 0000000 0000000000000 00 00000122222222111 12235799999999
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
+...+....++.+|+|||... |++.....|.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999988 899999999999874
No 312
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.28 E-value=4e-07 Score=95.11 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCCcEEEEcCcee-----EEEechhhhhhcCCcccHHHHHHhc--
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV-----------PLDGMVRRHNHLR-----IAQFHQHLAEKLDMDMSALQYMIKE-- 456 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~-----------p~~G~i~~~~~~~-----~~~~~q~~~~~~~~~~~~~~~~~~~-- 456 (582)
+++|+|++|||||||++.|+|... |+.|.|...+... +|++.+.+..........++.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 489999999999999999999876 4556666654210 1222211110000000111111100
Q ss_pred ------CCCCh---H---HHHHHHHHhcCCCCcc---ccCCCCCCChhHHHHHHHH----HHH-ccCCCEEEEeCCCCCC
Q 007982 457 ------YPGNE---E---EKMRAAIGRFGLTGKA---QVMPMKNLSDGQRSRVVFA----WLA-YRQPHMLLLDEPTNHL 516 (582)
Q Consensus 457 ------~~~~~---~---~~~~~~l~~~gl~~~~---~~~~~~~LSgGqkqrv~lA----ral-~~~p~lLlLDEPt~~L 516 (582)
..... . ..+.+++..+++.+.. -...+..+|+|+++++.++ +.+ ..+|++ +|||++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~ 336 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISAL 336 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECC
Confidence 01111 1 2346677777765422 0123466888888888877 555 434454 899999
Q ss_pred CHHHHHHHHHHHHh
Q 007982 517 DIETIDSLAEALNE 530 (582)
Q Consensus 517 D~~~~~~l~~~l~~ 530 (582)
|....+.+.+.|.+
T Consensus 337 ~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 337 KRTNLELLRDKIYQ 350 (364)
T ss_dssp TTBSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999888765
No 313
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.28 E-value=3.5e-06 Score=87.91 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=75.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhcCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRFGL 474 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 474 (582)
.+.|.||+|+|||||++.+++.+.+..+ ..+.++.... ..+ ....+..++..++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~------------~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRN------------FTAIIGEIARSLNI 100 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCS------------HHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCC------------HHHHHHHHHHHhCc
Confidence 8999999999999999999998766531 1112221110 001 11223344555554
Q ss_pred CCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecCHHHHHh
Q 007982 475 TGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLDEPTNHLDIETIDSLAEALNE------WDGGLVLVSHDFRLINQ 547 (582)
Q Consensus 475 ~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~~~~ 547 (582)
.. +....+.++.......... ..+|.+|+|||+... |......|...+.. .+..+|++||+.++...
T Consensus 101 ~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 101 PF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp CC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred cC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 21 1123444443332222111 245889999999876 98888888888754 35578999999876655
Q ss_pred hc
Q 007982 548 VA 549 (582)
Q Consensus 548 ~~ 549 (582)
+.
T Consensus 175 l~ 176 (389)
T 1fnn_A 175 LD 176 (389)
T ss_dssp SC
T ss_pred hC
Confidence 44
No 314
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.27 E-value=2.1e-07 Score=87.66 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999999973
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.21 E-value=5.3e-07 Score=85.71 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.8
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 35789999999999999999999999999977655
No 316
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.20 E-value=2.3e-07 Score=87.46 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 206 MRIALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 206 qRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
+.+.+|++|+.+|+++++| ||+||..++..+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999988754
No 317
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.13 E-value=6e-06 Score=86.04 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=33.4
Q ss_pred eeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC--CCCCCCcEEEE
Q 007982 381 LIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG--DLVPLDGMVRR 426 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G--l~~p~~G~i~~ 426 (582)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 47888888887 899999999999999999999 66777776653
No 318
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=2.5e-06 Score=88.56 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
-|++|+++.|+||||||||||+..++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999997543
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.12 E-value=2.6e-07 Score=87.93 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=37.5
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+|+++.++.....+..++..++|++++|+||||||||||+++|++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577888888888888888889999999999999999999999998665
No 320
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.11 E-value=8.3e-06 Score=84.01 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHH
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERL 167 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (582)
|+.+.--+.+|+++.|.|++|+|||||+.-++.........+ ..+...
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-l~fSlE------------------------------- 83 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-AVFSLE------------------------------- 83 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-EEEESS-------------------------------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCC-------------------------------
Confidence 444444578999999999999999999988763221111100 011110
Q ss_pred HcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHH-HHhhc-
Q 007982 168 EALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEE-TLKKF- 245 (582)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~~- 245 (582)
++......++......+.+. .+. -..||.++.+|+..|...+.+++++|.|+|... +........ +.+++
T Consensus 84 --ms~~ql~~Rlls~~~~v~~~-~l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~g 155 (338)
T 4a1f_A 84 --MSAEQLALRALSDLTSINMH-DLE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHK 155 (338)
T ss_dssp --SCHHHHHHHHHHHHHCCCHH-HHH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCT
T ss_pred --CCHHHHHHHHHHHhhCCCHH-HHh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcC
Confidence 11112222232333333332 121 247999999999999999999999999998644 444433333 33445
Q ss_pred CcEEEEEec
Q 007982 246 DRILVVISH 254 (582)
Q Consensus 246 ~~tviivsH 254 (582)
+..+|||-|
T Consensus 156 g~~lIVIDy 164 (338)
T 4a1f_A 156 ELGIAFIDY 164 (338)
T ss_dssp TEEEEEEEE
T ss_pred CCCEEEEec
Confidence 567777754
No 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.07 E-value=1.4e-05 Score=83.38 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=37.4
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhh------cCcEEEEEecCHHHHHhhcC
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKK------FDRILVVISHSQDFLNGVCT 264 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tviivsHd~~~~~~~~d 264 (582)
.+|.+|++||+... |......|...+.+ .+.++|++||+.++...+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 45889999999876 99988888888754 35689999999876655443
No 322
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.06 E-value=1e-06 Score=82.42 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=29.6
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCC-CCcEEE
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVP-LDGMVR 425 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p-~~G~i~ 425 (582)
.+|++++|+||||||||||+++|.+++++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 455554
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=1.7e-06 Score=82.16 Aligned_cols=38 Identities=26% Similarity=0.094 Sum_probs=24.2
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
..+++|+||++.+|.+++|+|++||||||+.+.|+...
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999998543
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.06 E-value=6.6e-06 Score=84.73 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=75.2
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCCh
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNE 461 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 461 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++.......+ .+.|+.- +++..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~--------~Vl~fSl--------Ems~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR--------GVAVFSL--------EMSAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------EEEEEES--------SSCHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--------eEEEEeC--------CCCHHHHH--------
Confidence 35555456899999999999999999999888764432112 2333321 11111111
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhc-CceEEEEe
Q 007982 462 EEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEA-LNEW-DGGLVLVS 539 (582)
Q Consensus 462 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~-~~tvi~vs 539 (582)
.++......+.+... . -+.||+++.+|+..|...+.+++++|.|+|... +.......+. .++. +..+|||-
T Consensus 91 -~Rlls~~~~v~~~~l--~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 91 -LRALSDLTSINMHDL--E--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp -HHHHHHHHCCCHHHH--H--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred -HHHHHHhhCCCHHHH--h--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 111222222222211 1 147999999999999999999999999998643 4443333332 2334 44566553
No 325
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.06 E-value=5e-06 Score=86.53 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=47.7
Q ss_pred ccCCCCChhHHHHHHHHHHHhcCCCceeec-CCCCCCCHHHHHHHHHHHhh-c-CcEEEEEe--cCHH
Q 007982 195 KKTRDFSGGWRMRIALARALFINPTILLLD-EPTNHLDLEACVWLEETLKK-F-DRILVVIS--HSQD 257 (582)
Q Consensus 195 ~~~~~LSGGqrqRv~LAraL~~~P~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tviivs--Hd~~ 257 (582)
.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +..+|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 467789999998876 55556777889999 99999999887666665554 3 56788888 8863
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.05 E-value=2.1e-06 Score=81.55 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
++|.+|++++|+||||||||||+++|++...++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468899999999999999999999999877443
No 327
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=1.6e-06 Score=82.35 Aligned_cols=38 Identities=39% Similarity=0.430 Sum_probs=24.8
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.05 E-value=1.5e-06 Score=81.71 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=24.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
|++++|+||||||||||+++|+++.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999988764
No 329
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.04 E-value=2.9e-05 Score=80.49 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.6
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
.|.+|+++.|+||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666654
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.04 E-value=2e-07 Score=88.85 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=38.6
Q ss_pred EEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 371 EVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 371 ~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
|++..+. .....+..++...+|++++|+||||||||||+++|++.+. ..|.+
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 4 NIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp ------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 4555443 2345567777789999999999999999999999999986 66766
No 331
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.03 E-value=1.4e-06 Score=82.42 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 208 IALARALFINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 208 v~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
...|++|+.+|.++++| ||++|..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999988887754
No 332
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.03 E-value=3.3e-06 Score=87.80 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=71.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.... .. + .......++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~---~~---~------------~~~~~~~i~~ 99 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQ---ID---T------------PYRVLADLLE 99 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHH---HC---S------------HHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCC---CC---C------------HHHHHHHHHH
Confidence 346789999999999999999999877554321 11112222110 00 0 1112233344
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEeCCCCCCC---HHHHHHHHHHHHh---cCceEEEEecCHH
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLA-YRQPHMLLLDEPTNHLD---IETIDSLAEALNE---WDGGLVLVSHDFR 543 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral-~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~---~~~tvi~vsHd~~ 543 (582)
.++... +....+..+.........- ...|.+|++||+....+ ......+.+.+.. .+..+|++||+.+
T Consensus 100 ~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 100 SLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 444321 1123444442222221111 23388999999988763 4455566666643 2457899999986
Q ss_pred HHHhh
Q 007982 544 LINQV 548 (582)
Q Consensus 544 ~~~~~ 548 (582)
+...+
T Consensus 175 ~~~~~ 179 (386)
T 2qby_A 175 FVDLL 179 (386)
T ss_dssp GGGGC
T ss_pred hHhhh
Confidence 54443
No 333
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.97 E-value=1.2e-06 Score=86.80 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=33.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHh---CCCCCCCcEEE
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMT---GDLVPLDGMVR 425 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~---Gl~~p~~G~i~ 425 (582)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999886
No 334
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.96 E-value=1.2e-06 Score=91.47 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCChh---hhhccCCCCChhHHHHHHHH----HHH-hcCCCceeecCCCCCCCHHHHHHHHHHHhh
Q 007982 178 RAAEILYGLGFNKT---MQAKKTRDFSGGWRMRIALA----RAL-FINPTILLLDEPTNHLDLEACVWLEETLKK 244 (582)
Q Consensus 178 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LA----raL-~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 244 (582)
.+.++|+.+++... ....++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...|.+.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 34566777665321 11345777898998988877 555 434454 89999999999998888765
No 335
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.96 E-value=2.6e-06 Score=80.94 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=29.2
Q ss_pred eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 386 LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 386 vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
..+...+|++++|+||||||||||+++|+|.+ |.+...+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 34566789999999999999999999999987 6666543
No 336
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.92 E-value=1.9e-05 Score=83.93 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=66.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
++.+++++|||||||||++..|++.+.+..++|.... .... .. ...+....+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--------~D~~-----r~------------~a~eqL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--------ADVY-----RP------------AAYDQLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--------ECCS-----CH------------HHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--------cCcc-----ch------------hHHHHHHHHHHh
Confidence 4679999999999999999999999887766664321 1100 00 011223334445
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHHhc
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPT-NH--LDIETIDSLAEALNEW 531 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 531 (582)
.|++-.... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|+....++...+...
T Consensus 151 ~gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 151 IGVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp TTCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred cCCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 555422110 111222222335566666788999999887 45 7777766666655443
No 337
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.92 E-value=4.1e-06 Score=78.27 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+|++++|+||||||||||+++|.+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999998765
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.92 E-value=2.1e-06 Score=84.97 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=27.7
Q ss_pred ECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh---cCCCCC
Q 007982 82 FHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIG---EIEASD 125 (582)
Q Consensus 82 y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~---~~~~~~ 125 (582)
++...++.+.+ ++|++++|+||||||||||+++|+ |+..++
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 33334454443 789999999999999999999999 776544
No 339
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.91 E-value=2.5e-06 Score=86.68 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCce
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSL 129 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~ 129 (582)
|++..|++++|+||||||||||+|+|+|+..++.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 3455799999999999999999999999988775543
No 340
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.88 E-value=3.7e-05 Score=79.54 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-|++|+++.|.||+|||||||+..++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999999998874
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=1.6e-05 Score=81.38 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=75.6
Q ss_pred eeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHH
Q 007982 87 LIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYER 166 (582)
Q Consensus 87 il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (582)
-|+.+.--+.+|+++.|.|++|+|||||+..++.-...... .++.+..+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~---~vl~~slE---------------------------- 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLE---------------------------- 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTC---EEEEEESS----------------------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEECC----------------------------
Confidence 45555545789999999999999999998887621111100 01111000
Q ss_pred HHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHH-HHHHHhhc
Q 007982 167 LEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVW-LEETLKKF 245 (582)
Q Consensus 167 l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~-l~~~l~~~ 245 (582)
++......++......+.+.. +.... ..||.++++|+..|...+.++++++.|+|. +++..... +..+.++.
T Consensus 106 ---~s~~~l~~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 106 ---MGKKENIKRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKN 178 (315)
T ss_dssp ---SCHHHHHHHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTS
T ss_pred ---CCHHHHHHHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhc
Confidence 011111222222222333221 11111 239999999999999999999999999986 44444332 33333445
Q ss_pred CcE--EEEEecC
Q 007982 246 DRI--LVVISHS 255 (582)
Q Consensus 246 ~~t--viivsHd 255 (582)
+.. +|+|-|-
T Consensus 179 ~~~~~lVVID~l 190 (315)
T 3bh0_A 179 PGKRVIVMIDYL 190 (315)
T ss_dssp SSCCEEEEEECG
T ss_pred CCCCeEEEEeCc
Confidence 656 8888664
No 342
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.86 E-value=6.2e-06 Score=78.33 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=24.4
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+..++|++++|+||||||||||+++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4566789999999999999999999998754
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.85 E-value=7.1e-06 Score=78.56 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=27.4
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
.+|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999877
No 344
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.84 E-value=3.3e-07 Score=93.30 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEEecCHHHHHhhcCEEE
Q 007982 485 NLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDIET-IDSLAEALNE----WDG--GLVLVSHDFRLINQVAHEIW 553 (582)
Q Consensus 485 ~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~vsHd~~~~~~~~d~i~ 553 (582)
.+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 100 ~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 100 RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 3898886 4566665 78999999 8999866 5555444443 342 45566677666666665543
No 345
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=9.9e-06 Score=84.09 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCceeecCCCCCCC---HHHHHHHHHHHhh---cCcEEEEEecCHHHHHhh
Q 007982 218 PTILLLDEPTNHLD---LEACVWLEETLKK---FDRILVVISHSQDFLNGV 262 (582)
Q Consensus 218 P~lLlLDEPt~~LD---~~~~~~l~~~l~~---~~~tviivsHd~~~~~~~ 262 (582)
|.+|++||+....+ ......+.+.+.. .+.++|++||+.++...+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 88999999988663 4455556565632 256899999998755443
No 346
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.81 E-value=5.3e-05 Score=78.35 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=25.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.81 E-value=5e-05 Score=77.87 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.+.+|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999888764
No 348
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=4e-06 Score=94.49 Aligned_cols=135 Identities=13% Similarity=0.008 Sum_probs=70.5
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCC--CCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHH
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVP--LDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEK 464 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (582)
++.+..+..++|+|+||+|||||++.|++...+ ..|+| ..+.....+..+........... .......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~--------~~~~~~~- 72 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTG--------VAPLLFR- 72 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCE--------EEEEEET-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEec--------ceEEeeC-
Confidence 456788999999999999999999999976654 55665 11110000000000000000000 0000000
Q ss_pred HHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHH
Q 007982 465 MRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRL 544 (582)
Q Consensus 465 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 544 (582)
+..-...+.|. .-. -.......+-..++-+|++| |+.++++.+... ...+...+..+|++.|.++.
T Consensus 73 --------~~~~nliDTpG-~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 73 --------GHRVFLLDAPG-YGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --------TEEEEEEECCC-SGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEECGGG
T ss_pred --------CEEEEEEeCCC-ccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecCCch
Confidence 00001111221 100 01223333345788899999 999999887744 44455567788899998875
Q ss_pred H
Q 007982 545 I 545 (582)
Q Consensus 545 ~ 545 (582)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 3
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.80 E-value=5.1e-07 Score=89.13 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++++.|++..+++++++.+++| ++|+||||||||||+++|++...
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44566777777777899999999999 99999999999999999997654
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.80 E-value=4.1e-06 Score=79.76 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=33.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
..+|.+++|+|+||||||||++.|.+++.+..|.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 4678899999999999999999999999888887754
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.78 E-value=7.2e-06 Score=79.78 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=31.4
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcC
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHN 428 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~ 428 (582)
....+|++++|+|+||||||||+++|+|+ .|.|...+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 34578999999999999999999999998 57776543
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.78 E-value=7.8e-06 Score=77.66 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.8
Q ss_pred eEEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 387 DFGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 387 sl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
No 353
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=2.4e-06 Score=86.87 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSS 128 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~ 128 (582)
+++.+|++++|+||||||||||+|+|.|...+..+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 456689999999999999999999999887665443
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.76 E-value=1.3e-05 Score=76.68 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=26.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999987654
No 355
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.75 E-value=3.5e-05 Score=80.17 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 85 HDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 85 ~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..+|++++++++ .++|||++|||||||++.|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 358899999998 8999999999999999999984
No 356
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.74 E-value=2.8e-06 Score=88.09 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=48.0
Q ss_pred eEEEEEEEEEecCCceeeE--------------eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 366 VLQFVEVTFGYTPDNLIYK--------------NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 366 ~l~~~~l~~~y~~~~~~l~--------------~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-+.|+|+++.|+..+..++ |+.+.|.+|++++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999987778888 899999999999999999999999999998865
No 357
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.74 E-value=8.5e-05 Score=76.13 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-+++|+++.|.||+|||||||+..++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 578999999999999999999998864
No 358
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.73 E-value=1.1e-07 Score=103.22 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred eEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 73 IRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 73 i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++...
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34455555566667889999999999 99999999999999999987543
No 359
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.73 E-value=4.3e-06 Score=85.71 Aligned_cols=44 Identities=32% Similarity=0.286 Sum_probs=39.4
Q ss_pred eEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 383 YKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 383 l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35788888999999999999999999999999999988888865
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.72 E-value=1.9e-05 Score=83.75 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred EeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 75 IESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 75 v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++...+.++
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 456777787654 678887 8999999999999999999999987765543
No 361
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.70 E-value=5e-06 Score=87.01 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=74.7
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHH--
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERV-- 163 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (582)
.+|+++++.+++|++++|+||||||||||+++|++... +.... +......... ....+. +... ...+++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~---g~~~~-~~~~~~~~~~--~lg~~~-q~~~--~l~dd~~~ 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALN-VNLPLDRLNF--ELGVAI-DQFL--VVFEDVKG 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEEC-CSSCTTTHHH--HHGGGT-TCSC--EEETTCCC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC---CcEEE-EeccchhHHH--HHHHhc-chhH--HHHHHHHH
Confidence 58999999999999999999999999999999987432 11100 1111111110 111111 1000 000000
Q ss_pred HHH-HHcCCh-hH--HHHHHHHHHHh---------------CCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCcee-e
Q 007982 164 YER-LEALDA-ST--AEKRAAEILYG---------------LGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILL-L 223 (582)
Q Consensus 164 ~~~-l~~~~~-~~--~~~~~~~~l~~---------------lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLl-L 223 (582)
... ...+.. .. ....+...+.+ .-+.....+.....+++|+++|++.+.+++..|++++ |
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 000 000000 00 01122333331 1122223456778899999999999888899999988 9
Q ss_pred cCCCC
Q 007982 224 DEPTN 228 (582)
Q Consensus 224 DEPt~ 228 (582)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99997
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.68 E-value=4.8e-05 Score=80.70 Aligned_cols=163 Identities=13% Similarity=-0.017 Sum_probs=85.1
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce--eEEEechh--hhhhcCCcccHHHHHHhcCCC
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL--RIAQFHQH--LAEKLDMDMSALQYMIKEYPG 459 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~--~~~~~~q~--~~~~~~~~~~~~~~~~~~~~~ 459 (582)
++++|. ++.+++++|+|||||||++..|++.+.+..|.|.....- +.+...|. .....+++. + ...+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v-----~-~~~~~ 162 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-----L-EVMDG 162 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-----E-ECCTT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE-----E-ecCCC
Confidence 567777 889999999999999999999999999988888653210 00000010 000000000 0 00011
Q ss_pred ChH-HHHHHHHHhc---CCCCccccCCCCCCC---hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH-hc
Q 007982 460 NEE-EKMRAAIGRF---GLTGKAQVMPMKNLS---DGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALN-EW 531 (582)
Q Consensus 460 ~~~-~~~~~~l~~~---gl~~~~~~~~~~~LS---gGqkqrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~-~~ 531 (582)
.+. +-+.++++.+ +.+-..-+.|. .++ .-..+...+++++.-++-+|++| ++.+.|... .+ +.++ ..
T Consensus 163 ~~p~~i~~~~l~~~~~~~~DvVIIDTaG-~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~av~--~a-~~f~~~l 237 (425)
T 2ffh_A 163 ESPESIRRRVEEKARLEARDLILVDTAG-RLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEALS--VA-RAFDEKV 237 (425)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHHHH--HH-HHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCC-cccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHHHH--HH-HHHHhcC
Confidence 111 2223344332 22222334442 343 23456667777776666678888 456655432 22 2333 34
Q ss_pred CceEEEEecC-H--------HHHHhhcCEEEEEeCCe
Q 007982 532 DGGLVLVSHD-F--------RLINQVAHEIWVCENQA 559 (582)
Q Consensus 532 ~~tvi~vsHd-~--------~~~~~~~d~i~~l~~G~ 559 (582)
+.+-|++|+- . .......-.|.++..|.
T Consensus 238 ~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge 274 (425)
T 2ffh_A 238 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSE 274 (425)
T ss_dssp CCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSS
T ss_pred CceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCC
Confidence 5565666662 2 12233345677776664
No 363
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.68 E-value=0.00016 Score=70.37 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE--cCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHhc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR--HNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGRF 472 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~--~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (582)
.++|+|++|+|||||++.|+|...+.++.... ........+.-. ...+ . +++.-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i----~-------------------liDTp 86 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETEL----V-------------------VVDTP 86 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-TEEE----E-------------------EEECC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-CceE----E-------------------EEECC
Confidence 57999999999999999999987766664311 111111111000 0000 0 00111
Q ss_pred CCCCccccCCCCCCChhHHHHHHHHHHH---ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec
Q 007982 473 GLTGKAQVMPMKNLSDGQRSRVVFAWLA---YRQPHMLLLDEPTNHLDIETIDSLAEALNEWD-----GGLVLVSH 540 (582)
Q Consensus 473 gl~~~~~~~~~~~LSgGqkqrv~lAral---~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH 540 (582)
|+.. ...|+.+.++ .+.+.+ ...|+++|+..+.+.++......+..++..++ ..+|+++|
T Consensus 87 G~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 87 GIFD-------TEVPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp SCC------------CHHHHH-HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CccC-------CCCCHHHHHH-HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 1110 1233333332 222322 35789999999998998877766666654432 37888898
No 364
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.67 E-value=4.8e-06 Score=85.23 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred eeeEeeeEEEecCC------EEEEEcCCCCcHHHHHHHHhCCCC--CCCcEEEEcCceeEEEechhhhhhcCCcccHHHH
Q 007982 381 LIYKNLDFGVDLDS------RVALVGPNGAGKSTLLKLMTGDLV--PLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQY 452 (582)
Q Consensus 381 ~~l~~vsl~i~~Ge------~~aivG~NGsGKSTLl~ll~Gl~~--p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 452 (582)
..+++++..+..+. ++||+||||||||||+++|.+++. |..|.|.. +.++.. .......+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~--------i~~D~f---~~~~~~l~~ 142 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV--------ITTDGF---LYSNAKLEK 142 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE--------EEGGGG---BCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE--------Eeeccc---ccchhhhhh
Confidence 34555555555554 899999999999999999999987 45665432 221110 000000000
Q ss_pred --HH--hcCCC-ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 007982 453 --MI--KEYPG-NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDI 518 (582)
Q Consensus 453 --~~--~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~ 518 (582)
+. ..++. .+.....+.+..+.-.......| .+|.+..+|+..+...+..|+++|++.|..-.|.
T Consensus 143 ~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 143 QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 00 01111 12334444444432111011223 2444444444333445678999999999988776
No 365
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.67 E-value=2.4e-05 Score=70.88 Aligned_cols=29 Identities=45% Similarity=0.607 Sum_probs=24.1
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.++++.+| +.+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345556555 99999999999999999996
No 366
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.66 E-value=1.5e-05 Score=73.33 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=25.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998753
No 367
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00021 Score=71.71 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHhcCCCceeecCCCCCCCH----------HHHHHHHHHHhhc-------CcEEEEEecCHH
Q 007982 201 SGGWRMRIALARALFINPTILLLDEPTNHLDL----------EACVWLEETLKKF-------DRILVVISHSQD 257 (582)
Q Consensus 201 SGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~----------~~~~~l~~~l~~~-------~~tviivsHd~~ 257 (582)
+++++.|..+..+...+|.+|++||+.+-++. .....++..+... +..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 45777888888888899999999999887653 2233455555443 235777888754
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=1.1e-06 Score=90.01 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=40.6
Q ss_pred eeeEEEECCeeeeEeeeEEEeCCc------EEEEECCCCCcHHHHHHHHhcCCC
Q 007982 76 ESLSVTFHGHDLIVDSELELNYGR------RYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 76 ~nls~~y~~~~il~~vsl~i~~Ge------~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+.|++.|++...+.+++..+..+. ++||+||||||||||+++|.++..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345666777888888888887776 999999999999999999998765
No 369
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.63 E-value=5e-05 Score=77.55 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=28.6
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+..++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4555555689999999999999999999887764
No 370
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.63 E-value=0.0001 Score=79.22 Aligned_cols=175 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAEKRA 179 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 179 (582)
.++|||++|+|||||++.|.+-.........
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~------------------------------------------------- 55 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTP------------------------------------------------- 55 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC-------------------------------------------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCC-------------------------------------------------
Q ss_pred HHHHHhCCCChhhhhccCCCCC--------hh--------HHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHh
Q 007982 180 AEILYGLGFNKTMQAKKTRDFS--------GG--------WRMRIALARALFINPTILLLDEPTNHLDLEACVWLEETLK 243 (582)
Q Consensus 180 ~~~l~~lgl~~~~~~~~~~~LS--------GG--------qrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~ 243 (582)
|.+.+.....+..-. +| +.+...++...+.+++++|+......-......++.+.++
T Consensus 56 -------g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~ 128 (456)
T 4dcu_A 56 -------GVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY 128 (456)
T ss_dssp ------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT
T ss_pred -------CcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH
Q ss_pred hcCcEEEEEecCHHHHHhhc--CeEEEEeCCeEEEEcCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 007982 244 KFDRILVVISHSQDFLNGVC--TNIIHMQNKQLKFYTGNFDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSA 321 (582)
Q Consensus 244 ~~~~tviivsHd~~~~~~~~--d~i~~l~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (582)
+.+..+|++-+..|...... ...+-+.-|.....+.....-.
T Consensus 129 ~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv------------------------------------ 172 (456)
T 4dcu_A 129 RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGL------------------------------------ 172 (456)
T ss_dssp TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTH------------------------------------
T ss_pred HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccch------------------------------------
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCcccccCceeEEEeccCCCCCCCeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcC
Q 007982 322 KLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGP 401 (582)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~ 401 (582)
....+.+.. .++........ ...-.++|+|.
T Consensus 173 ---------~~L~~~i~~---------------~l~~~~~~~~~-------------------------~~~~ki~ivG~ 203 (456)
T 4dcu_A 173 ---------GDLLDAVAE---------------HFKNIPETKYN-------------------------EEVIQFCLIGR 203 (456)
T ss_dssp ---------HHHHHHHHT---------------TGGGSCSSCCC-------------------------TTCEEEEEECS
T ss_pred ---------HHHHHHHHh---------------hcccccccccc-------------------------cccceeEEecC
Q ss_pred CCCcHHHHHHHHhC
Q 007982 402 NGAGKSTLLKLMTG 415 (582)
Q Consensus 402 NGsGKSTLl~ll~G 415 (582)
.|+|||||++.+.|
T Consensus 204 ~~vGKSslin~l~~ 217 (456)
T 4dcu_A 204 PNVGKSSLVNAMLG 217 (456)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.62 E-value=7.4e-06 Score=80.72 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=43.9
Q ss_pred EEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 367 LQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 367 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
.+++++.+.|. ...+++++++.+..| ++|+||||||||||+++|++.+. .|.|...
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 34555555564 245788999999998 99999999999999999999875 5666554
No 372
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=0.0002 Score=76.00 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHHHHHcCChhHHH
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYERLEALDASTAE 176 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 176 (582)
++.+++++|+|||||||++..|+......+..+ ..+..+..+... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV-llv~~D~~r~~a---------------------------------~ 141 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV-GLVAADVYRPAA---------------------------------Y 141 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE-EEEEECCSCHHH---------------------------------H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEecCccchhH---------------------------------H
Confidence 578999999999999999999986554432221 112222110000 0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCC-CC--CCHHHHHHHHHHHhhc
Q 007982 177 KRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPT-NH--LDLEACVWLEETLKKF 245 (582)
Q Consensus 177 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt-~~--LD~~~~~~l~~~l~~~ 245 (582)
.....+.+..|++-.. .....+--.--+-+++.+...+++++|+|+|. .+ .|+....++..+++..
T Consensus 142 eqL~~~~~~~gv~~~~---~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 142 DQLLQLGNQIGVQVYG---EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp HHHHHHHHTTTCCEEC---CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceee---ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 0111122233332110 00011111112335666666799999999997 56 8888777777765544
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.60 E-value=2e-05 Score=76.65 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=26.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 93 LELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 93 l~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.++|++++|+|+||||||||+++|++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999999987
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.60 E-value=1.1e-05 Score=88.46 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc-EEE
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG-MVR 425 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G-~i~ 425 (582)
.+.+|++++|+|+||||||||+++|+|.+.|++| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 4789999999999999999999999999999887 664
No 375
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.59 E-value=1e-05 Score=80.96 Aligned_cols=128 Identities=13% Similarity=0.224 Sum_probs=74.8
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCce-----------eEEEec
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHL-----------RIAQFH 436 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~-----------~~~~~~ 436 (582)
+++++.+.|. ...++++++|.+.+| ++|+||||||||||+++|++.+. .|.|...+.. .+.+++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4556666664 346789999999998 99999999999999999999875 5666654210 011122
Q ss_pred hhhhhhcCCcccHHHHH---HhcCCC---ChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007982 437 QHLAEKLDMDMSALQYM---IKEYPG---NEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLD 510 (582)
Q Consensus 437 q~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLD 510 (582)
|.... ..+..++++.+ ...... .......+.+.. .+..|||||+||+.+++++..+|++ ||
T Consensus 126 ~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 22110 11111211111 100000 000111112111 1246899999999999999999987 67
Q ss_pred CCC
Q 007982 511 EPT 513 (582)
Q Consensus 511 EPt 513 (582)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 664
No 376
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.58 E-value=2e-05 Score=72.84 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=27.7
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
.+|++++|+|+|||||||+++.|++.+ |.+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 358899999999999999999999875 555544
No 377
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.56 E-value=0.00019 Score=72.01 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=64.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHHh
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIGR 471 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (582)
++..+.|.||+|+|||||++.|++.+.. . ..++.. ..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~~--~~------------------------------ 89 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNISA--AS------------------------------ 89 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEES--TT------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEeeH--HH------------------------------
Confidence 3567899999999999999999985421 0 000000 00
Q ss_pred cCCCCccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHhcC-------ce
Q 007982 472 FGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPHMLLLDEPTNHLDIE----------TIDSLAEALNEWD-------GG 534 (582)
Q Consensus 472 ~gl~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lLlLDEPt~~LD~~----------~~~~l~~~l~~~~-------~t 534 (582)
+. . .. .-++++..+..+..+...+|.+|++||+.+-++.. ....+...+.... ..
T Consensus 90 --l~---~-~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 90 --LT---S-KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp --TS---S-SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred --Hh---h-cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 00 0 00 12467888888898888999999999998776532 2234445555432 24
Q ss_pred EEEEecCHH
Q 007982 535 LVLVSHDFR 543 (582)
Q Consensus 535 vi~vsHd~~ 543 (582)
||.+|++.+
T Consensus 162 vi~~tn~~~ 170 (297)
T 3b9p_A 162 VLAATNRPQ 170 (297)
T ss_dssp EEEEESCGG
T ss_pred EEeecCChh
Confidence 677888653
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.55 E-value=3.6e-05 Score=69.70 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.4
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455556554 89999999999999999986
No 379
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=3.1e-05 Score=71.18 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.|.+++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999997653
No 380
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.53 E-value=3.8e-05 Score=70.88 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|++++|+|+||||||||+++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998653
No 381
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.52 E-value=1.2e-05 Score=83.30 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=45.3
Q ss_pred ceEEeeeEEEECC-eeeeE--------------eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 72 DIRIESLSVTFHG-HDLIV--------------DSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 72 ~i~v~nls~~y~~-~~il~--------------~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.++|+++.|+. +..|+ |+++.+.+|++++|+||+|+|||||++.|+..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 5788999999975 56888 89999999999999999999999999999764
No 382
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.52 E-value=3.5e-05 Score=73.17 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=25.6
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 92 ELELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 92 sl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 33445899999999999999999999986554
No 383
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.46 E-value=4.6e-05 Score=81.55 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHhc---CceEEEEecC
Q 007982 502 RQPHMLLLDEPTNHLDI-ETIDSLAEALNEW---DGGLVLVSHD 541 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~~---~~tvi~vsHd 541 (582)
.+|++|++||+..-.+. .+...+...++.+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999887764 5667777777543 5678899997
No 384
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.44 E-value=0.00022 Score=76.20 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=31.3
Q ss_pred cCCCceeecCCCCCCCH-HHHHHHHHHHhh---cCcEEEEEecCH
Q 007982 216 INPTILLLDEPTNHLDL-EACVWLEETLKK---FDRILVVISHSQ 256 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~-~~~~~l~~~l~~---~~~tviivsHd~ 256 (582)
.+|++||+||+..-.+. .....+...+.. .+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 566677777654 367889999973
No 385
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.43 E-value=3.5e-05 Score=73.17 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.++|.+++|+|+||||||||+++|++...+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999866543
No 386
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.40 E-value=1.7e-05 Score=76.36 Aligned_cols=34 Identities=38% Similarity=0.576 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC---CCCCcEEEE
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL---VPLDGMVRR 426 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~---~p~~G~i~~ 426 (582)
+.+++|+||+||||||++++|++.+ .++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999998766 556666543
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.39 E-value=5.6e-05 Score=71.85 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=27.4
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.+.+|.+++|+|++|||||||+++|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 477899999999999999999999999874
No 388
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.37 E-value=5.7e-05 Score=85.01 Aligned_cols=48 Identities=4% Similarity=-0.047 Sum_probs=36.2
Q ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecCHHHH
Q 007982 210 LARALFINPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFL 259 (582)
Q Consensus 210 LAraL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd~~~~ 259 (582)
...+-..++-++++| |++++++.+..++. .+...+..+|++.|.+|..
T Consensus 92 ~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~-~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 92 RGALEAADAALVAVS-AEAGVQVGTERAWT-VAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEECGGGC
T ss_pred HHHHhhcCcEEEEEc-CCcccchhHHHHHH-HHHHccCCEEEEecCCchh
Confidence 333446788899999 99999998886554 4555678888999998753
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.37 E-value=3.4e-06 Score=87.35 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=45.6
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.++.+++++.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++...+.
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 355667777777778899999999999999999999999999999998765443
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.0012 Score=68.51 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=75.0
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHH
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAA 468 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (582)
.+.+|+++.|.|++|+|||||+..++.......+. +.|+.-... + + .. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~--------vlyid~E~s--~--~---------------~~----~ 107 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEHA--L--D---------------PI----Y 107 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC--------EEEEESSCC--C--C---------------HH----H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe--------EEEEeCCCC--c--c---------------HH----H
Confidence 37899999999999999999998877543222222 223221100 0 0 00 0
Q ss_pred HHhcCCCCc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH-H-----------HH-HH-------H
Q 007982 469 IGRFGLTGK--AQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI-E-----------TI-DS-------L 524 (582)
Q Consensus 469 l~~~gl~~~--~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~-~-----------~~-~~-------l 524 (582)
+..+|+... ....+ -+. + +-+.+++.++ .+|+++|+|+++.-... + .. +. |
T Consensus 108 a~~~g~~~~~l~i~~~---~~~-e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L 182 (356)
T 1u94_A 108 ARKLGVDIDNLLCSQP---DTG-E-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 182 (356)
T ss_dssp HHHTTCCGGGCEEECC---SSH-H-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHH
T ss_pred HHHcCCChhheeeeCC---CCH-H-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHH
Confidence 223333211 11111 122 2 3345555554 68999999999987631 1 01 11 2
Q ss_pred HHHHHhcCceEEEEecCHH----------------HHHhhcCEEEEEeCCeE
Q 007982 525 AEALNEWDGGLVLVSHDFR----------------LINQVAHEIWVCENQAV 560 (582)
Q Consensus 525 ~~~l~~~~~tvi~vsHd~~----------------~~~~~~d~i~~l~~G~i 560 (582)
...+++++.+||+++|-.. .+..+||-++.+...++
T Consensus 183 ~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~ 234 (356)
T 1u94_A 183 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 234 (356)
T ss_dssp HHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEE
T ss_pred HHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeee
Confidence 2233556889999988532 35567888777765443
No 391
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.35 E-value=9.9e-05 Score=70.36 Aligned_cols=29 Identities=45% Similarity=0.607 Sum_probs=24.3
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445666664 99999999999999999985
No 392
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.35 E-value=3.3e-05 Score=79.12 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=34.3
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCC
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMS 127 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~ 127 (582)
+.+++|++.+|++++|+|+||+||||++..|++...+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999999999987665433
No 393
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.34 E-value=0.00073 Score=72.25 Aligned_cols=163 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhh-hhhc---------CCcccHHH
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHL-AEKL---------DMDMSALQ 451 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~-~~~~---------~~~~~~~~ 451 (582)
-|+.+.-.+.+|+.+.|.|++|+|||||+..++.......|. .+.|+.-.. ...+ ..+...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~slE~~~~~l~~R~~~~~~~i~~~~l- 260 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSLEMPAAQLTLRMMCSEARIDMNRV- 260 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEESSSCHHHHHHHHHHHHTTCCTTTC-
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEECCCCHHHHHHHHHHHHcCCCHHHH-
Confidence 455555568999999999999999999998887654322221 122221110 0000 0000000
Q ss_pred HHHhcCCCChHHHHHHHHHhcCCCCccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH------HH---
Q 007982 452 YMIKEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVVFAWLAY--RQPHMLLLDEPTNHLDI------ET--- 520 (582)
Q Consensus 452 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqrv~lAral~--~~p~lLlLDEPt~~LD~------~~--- 520 (582)
........+..++..+++.+.-.......+ ..+|..+.. ..++.+. .+|+++|+|..+.-... .+
T Consensus 261 -~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~-~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~ 336 (444)
T 2q6t_A 261 -RLGQLTDRDFSRLVDVASRLSEAPIYIDDT-PDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQ 336 (444)
T ss_dssp -CGGGCCHHHHHHHHHHHHHHHTSCEEEECC-TTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHH
T ss_pred -hCCCCCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHH
Confidence 000011111223333343332222222222 367777653 3445454 58999999999865543 11
Q ss_pred -HHHHHHHH----HhcCceEEEEecCHH-------------------HHHhhcCEEEEEe
Q 007982 521 -IDSLAEAL----NEWDGGLVLVSHDFR-------------------LINQVAHEIWVCE 556 (582)
Q Consensus 521 -~~~l~~~l----~~~~~tvi~vsHd~~-------------------~~~~~~d~i~~l~ 556 (582)
...+...| ++++.+||+++|=-. -+.+.||.|+++.
T Consensus 337 ~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 337 EIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 12233333 456789999998211 3567899999985
No 394
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.34 E-value=1.5e-05 Score=82.42 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=40.9
Q ss_pred ceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 380 NLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
..+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 35678888888999999999999999999999999998887776643
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.32 E-value=7.2e-05 Score=72.75 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=31.3
Q ss_pred eEeeeEEEe---cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 383 YKNLDFGVD---LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 383 l~~vsl~i~---~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 555543
No 396
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.29 E-value=8e-05 Score=70.77 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++++|.+++|+|++|||||||+++|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999999999865
No 397
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.27 E-value=9.4e-05 Score=85.10 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=28.0
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
|.+.+|+.+.|+||||||||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578899999999999999999999999874
No 398
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.26 E-value=0.00043 Score=67.25 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=30.4
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEec
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF-----DRILVVISH 254 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tviivsH 254 (582)
.+|+++|+..+.+.++.....++..++..+ ..++|+++|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 478999999999999888777777766533 247888888
No 399
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.22 E-value=5.7e-05 Score=82.89 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=29.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDM 126 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~ 126 (582)
.+.+|++++|+|+||||||||+++|++...++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 467999999999999999999999998876654
No 400
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.0004 Score=70.25 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+.++..+.|.||+|+|||||+++|+...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678899999999999999999998654
No 401
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.21 E-value=0.00025 Score=67.53 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.9
Q ss_pred EeeeEEEecCCEEEEEcCCCCcHHHHHHHHh
Q 007982 384 KNLDFGVDLDSRVALVGPNGAGKSTLLKLMT 414 (582)
Q Consensus 384 ~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~ 414 (582)
.+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455555554 89999999999999999874
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.17 E-value=7.5e-05 Score=69.24 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=26.8
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
No 403
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.17 E-value=9.2e-05 Score=76.72 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=29.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEE
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVR 425 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~ 425 (582)
.+.+++|+|++|||||||++.|+|.+.|..|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 4568999999999999999999998877777664
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.13 E-value=0.00018 Score=69.88 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=26.5
Q ss_pred eEeeeEEEe---CCcEEEEECCCCCcHHHHHHHHhcCCCC
Q 007982 88 IVDSELELN---YGRRYGLLGLNGCGKSTLLTAIGEIEAS 124 (582)
Q Consensus 88 l~~vsl~i~---~Ge~~~LvG~NGsGKSTLl~~l~~~~~~ 124 (582)
|.++||.+. .|.+++|.|++||||||+++.|+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 556666665 8999999999999999999999876544
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.09 E-value=0.00024 Score=68.28 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+.+++|+||+||||||++++|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
No 406
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.05 E-value=9.8e-05 Score=69.63 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=30.9
Q ss_pred EEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 373 TFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 373 ~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+++|++-..++++++|..+.. .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 345665456788888887776 589999999999999999987
No 407
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.04 E-value=0.00025 Score=66.21 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.1
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999754
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.0003 Score=65.10 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|++++|+|++||||||++++|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999998754
No 409
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.03 E-value=0.0051 Score=63.69 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=23.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
+++|+++.|.|++|+|||||...++
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988775
No 410
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=6.7e-05 Score=82.47 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=43.6
Q ss_pred EEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 369 FVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 369 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
++++...|. ...++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|..
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 445555553 234667778877 79999999999999999999999999877666644
No 411
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.98 E-value=0.0004 Score=65.49 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999986643
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.98 E-value=0.0026 Score=67.88 Aligned_cols=130 Identities=13% Similarity=0.049 Sum_probs=74.0
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCCCCceeeeeechHHHHHHHHHHHHhccccCCCcchHHHHHH
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASDMSSLEAVISCDEERLKLEKEAEILGAQEDGGGEQLERVYE 165 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (582)
.-|+.+.--+.+|+++.|.|++|+|||||+..++.-.....+.-...+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE----------------------------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE----------------------------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-----------------------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-----------------------------
Confidence 345555545889999999999999999998887632211001000011110
Q ss_pred HHHcCChhHHHHHHHHHHHhCCCChhhhhccCCCCChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHH-HHHHHHhh
Q 007982 166 RLEALDASTAEKRAAEILYGLGFNKTMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACV-WLEETLKK 244 (582)
Q Consensus 166 ~l~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~-~l~~~l~~ 244 (582)
++......+.... ..+++.... .-..||..+.+|+.-|...+.+.++.+.|+|. +++.... .+..+.++
T Consensus 239 ----~~~~~l~~R~~~~--~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~ 308 (444)
T 2q6t_A 239 ----MPAAQLTLRMMCS--EARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQ 308 (444)
T ss_dssp ----SCHHHHHHHHHHH--HTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHH--HcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHH
Confidence 0111111121111 223321111 12469999999999888888888899999874 4444333 33344445
Q ss_pred cCcEEEEEec
Q 007982 245 FDRILVVISH 254 (582)
Q Consensus 245 ~~~tviivsH 254 (582)
.+..+|+|-+
T Consensus 309 ~~~~lIvID~ 318 (444)
T 2q6t_A 309 NQVGLIIIDY 318 (444)
T ss_dssp SCCCEEEEEC
T ss_pred cCCCEEEEcC
Confidence 5667777754
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.98 E-value=0.00027 Score=66.80 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 007982 395 RVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~G 415 (582)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 414
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00033 Score=66.17 Aligned_cols=21 Identities=52% Similarity=0.797 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 415
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.93 E-value=2.1e-05 Score=86.47 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=42.1
Q ss_pred EEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 74 RIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
-++++.+.|....++.++++++ +|+.++|+||||||||||+++|++...+.
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3456666776667788888888 89999999999999999999999876543
No 416
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.92 E-value=6.1e-05 Score=78.47 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=36.5
Q ss_pred ceEEeeeEEEECCeeeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhcC
Q 007982 72 DIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 72 ~i~v~nls~~y~~~~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+.+.|++..|+.+.++++++|.| +|+|+||+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 588899999998888999999877 99999999999999998654
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.00039 Score=65.88 Aligned_cols=29 Identities=21% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
...+|.+++|+||+|||||||.+.|....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999997544
No 418
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00015 Score=69.25 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.7
Q ss_pred EEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 388 FGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 388 l~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
+.+.+|.+++|+|++||||||+.+.|.+.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 34667899999999999999999999998876666
No 419
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.0004 Score=64.70 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=26.3
Q ss_pred eeeEEEecCCEEEEEcCCCCcHHHHHHHHhCC
Q 007982 385 NLDFGVDLDSRVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 385 ~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl 416 (582)
++|+....|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788888999999999999999999999875
No 420
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.86 E-value=0.0018 Score=65.88 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
+..+.|.||+|+|||||++.|+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4579999999999999999998543
No 421
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.85 E-value=0.00034 Score=70.51 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHhcCC-CceeecCCCCCCCHHHHHHHHHHHhhc
Q 007982 210 LARALFINP-TILLLDEPTNHLDLEACVWLEETLKKF 245 (582)
Q Consensus 210 LAraL~~~P-~lLlLDEPt~~LD~~~~~~l~~~l~~~ 245 (582)
+..++...| .+|++||. ..|++.....|.+.|.+.
T Consensus 111 ~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 344444444 69999998 678999999999998753
No 422
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.0013 Score=63.86 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHH-HHHHHHHhcC-c-eEEE-EecCHHHHHhhcC
Q 007982 486 LSDGQRSRVVFAWLAYRQPHMLLLDEPTN-HLDIETID-SLAEALNEWD-G-GLVL-VSHDFRLINQVAH 550 (582)
Q Consensus 486 LSgGqkqrv~lAral~~~p~lLlLDEPt~-~LD~~~~~-~l~~~l~~~~-~-tvi~-vsHd~~~~~~~~d 550 (582)
.+.|...+... ..+.+.++||+||.-. ++|..... .+.+.+.... . .+++ .|.+.+.+.++.+
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 35566665543 3578999999999976 58877664 4444444442 2 3333 4566555555543
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.00029 Score=65.65 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.9
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
..+|.++.|+|++||||||+++.|+..+.+..+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 44688999999999999999999999887665554
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.83 E-value=0.0012 Score=66.36 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCCCcEE
Q 007982 394 SRVALVGPNGAGKSTLLKLMTGDLVPLDGMV 424 (582)
Q Consensus 394 e~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i 424 (582)
..+.|+||+|+||||+++.|++.+.+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4688999999999999999999887655543
No 425
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.82 E-value=0.00011 Score=76.56 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=35.9
Q ss_pred CeEEEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcE
Q 007982 365 PVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGM 423 (582)
Q Consensus 365 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~ 423 (582)
..+.+.+++..|. .+.++++++|+| +|+|++|+|||||++.|.|...+..+.
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3577888888775 356788888876 999999999999999999876554443
No 426
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.81 E-value=0.00058 Score=62.65 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+|..++|+|++|+|||||++.|+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 577899999999999999999998653
No 427
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.81 E-value=0.001 Score=67.63 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
+..+.|.||+|+|||||++.|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457889999999999999999987644
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.81 E-value=0.00055 Score=64.84 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=26.0
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
..+|.+++|+||+|||||||.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56789999999999999999999988763
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.81 E-value=0.00064 Score=64.88 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHH
Q 007982 502 RQPHMLLLDEPTNHLDIETIDSLAEALNEW--DGGLVLVSHDFRL 544 (582)
Q Consensus 502 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~ 544 (582)
.+|.+|++||.-. +|......+...+... +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 8888888898888775 3468888887653
No 430
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.79 E-value=0.00054 Score=62.86 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998754
No 431
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.78 E-value=0.00015 Score=73.28 Aligned_cols=42 Identities=19% Similarity=-0.003 Sum_probs=36.2
Q ss_pred Ee-eeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEE
Q 007982 384 KN-LDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRR 426 (582)
Q Consensus 384 ~~-vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~ 426 (582)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..++|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 677766 8999999999999999999999999887777764
No 432
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.76 E-value=0.0017 Score=66.14 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.5
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988774
No 433
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.74 E-value=0.00076 Score=62.89 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=20.7
Q ss_pred eeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 382 IYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678889888776 789999999999999999987
No 434
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=6.9e-05 Score=77.15 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=39.3
Q ss_pred eeEEEECCeeeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcCCC
Q 007982 77 SLSVTFHGHDLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 77 nls~~y~~~~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
+++..|+...+++.++..+..|++ +.|.||+|+||||+++++++...
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344456667788889999999998 99999999999999999986543
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.0021 Score=61.22 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=32.9
Q ss_pred cCCCceeecCCCCCCCHHHHHHHHHHHhhc--CcEEEEEecCHHH
Q 007982 216 INPTILLLDEPTNHLDLEACVWLEETLKKF--DRILVVISHSQDF 258 (582)
Q Consensus 216 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tviivsHd~~~ 258 (582)
.+|.+|++||.-. ||......|...+.+. +..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4678999999765 8888888898888764 3578888887653
No 436
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.00075 Score=70.71 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=30.3
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCC-----------CCCCCcEEEE
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGD-----------LVPLDGMVRR 426 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl-----------~~p~~G~i~~ 426 (582)
+..|..++|+|+||+|||||++.|+|. ..|..|.|..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 567889999999999999999999998 5667777654
No 437
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.70 E-value=0.00084 Score=62.15 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
.++|+|++|+|||||++.++|...+..+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~ 31 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLG 31 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCC
Confidence 5899999999999999999997544433
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.69 E-value=0.0011 Score=60.28 Aligned_cols=24 Identities=42% Similarity=0.725 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
No 439
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0023 Score=66.07 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=65.0
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEcCceeEEEechhhhhhcCCcccHHHHHHhcCCCChHHHHHHHHH
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDMDMSALQYMIKEYPGNEEEKMRAAIG 470 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (582)
..+..+.|.||.|+|||||++.++..+....+.. .....+.++... . ..+ ...-+..++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~--~----~~~------------~~~~~~~l~~ 101 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSL--GVLVKPIYVNAR--H----RET------------PYRVASAIAE 101 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH--TCCEEEEEEETT--T----SCS------------HHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc--CCCeEEEEEECC--c----CCC------------HHHHHHHHHH
Confidence 3456789999999999999999987653221000 000011111110 0 001 1122344455
Q ss_pred hcCCCCccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHH-HHHHHHHHHHhc-------CceEEEEec
Q 007982 471 RFGLTGKAQVMPMKNLSDGQRSRVVFAWLA--YRQPHMLLLDEPTNHLDIE-TIDSLAEALNEW-------DGGLVLVSH 540 (582)
Q Consensus 471 ~~gl~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lLlLDEPt~~LD~~-~~~~l~~~l~~~-------~~tvi~vsH 540 (582)
.++.. .+....|.++.... +..++ ...|.+|++||.-.-.+.. ....+..+++.. +..+|++|+
T Consensus 102 ~l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 102 AVGVR-----VPFTGLSVGEVYER-LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHSCC-----CCSSCCCHHHHHHH-HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HhCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 55542 12234455552222 22233 2347799999986543221 445565555532 346889998
Q ss_pred CHH
Q 007982 541 DFR 543 (582)
Q Consensus 541 d~~ 543 (582)
+.+
T Consensus 176 ~~~ 178 (387)
T 2v1u_A 176 SLG 178 (387)
T ss_dssp CST
T ss_pred CCc
Confidence 873
No 440
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.65 E-value=0.00038 Score=75.37 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=41.5
Q ss_pred EEEEEEEEecCCceeeEeeeEEEecCCEEEEEcCCCCcHHHHHHHHhCCCCCCCcEEEEc
Q 007982 368 QFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPLDGMVRRH 427 (582)
Q Consensus 368 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~aivG~NGsGKSTLl~ll~Gl~~p~~G~i~~~ 427 (582)
+++++...|. ...+++++++.++.| +.|+||||+|||||+++|++... .+.+...
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~ 96 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 96 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence 3444444443 245788899999988 89999999999999999999874 4555543
No 441
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.00086 Score=62.12 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999974
No 442
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.60 E-value=0.0014 Score=69.93 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC------------CCCcEEEEcC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDLV------------PLDGMVRRHN 428 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~~------------p~~G~i~~~~ 428 (582)
.++|+|+||+|||||++.|+|... |.+|.+...+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 689999999999999999999864 5566666554
No 443
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.58 E-value=0.00019 Score=67.61 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=30.1
Q ss_pred EEEECCe-eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 79 SVTFHGH-DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 79 s~~y~~~-~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
++.|++. .+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4556553 6888999888777 589999999999999999974
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0033 Score=62.37 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.3
Q ss_pred ecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 391 DLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 391 ~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..+..+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445678999999999999999998765
No 445
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0011 Score=61.54 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=25.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
..+|.+++|+|++||||||+.+.|+....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999986543
No 446
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=68.84 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
.+.+++|+|++|||||||++.|.+...+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 57799999999999999999998755433
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.56 E-value=0.0011 Score=60.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 448
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.56 E-value=0.00096 Score=62.19 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=20.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 86 DLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4678899988776 789999999999999999975
No 449
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.001 Score=62.70 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 450
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.54 E-value=0.00028 Score=72.75 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.2
Q ss_pred eeeEeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhcC
Q 007982 86 DLIVDSELELNYGRR--YGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 86 ~il~~vsl~i~~Ge~--~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.+++.+++.+++|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 356777888889998 999999999999999999753
No 451
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.00093 Score=63.01 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 452
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.52 E-value=0.018 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.+|+++.|.||.|+|||||+..++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877654
No 453
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.51 E-value=0.0023 Score=63.55 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
..+.-+.|.||.|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999997543
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.49 E-value=0.00081 Score=68.05 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHHh--cCCCceeecCCCCCCCHHH-HHHHHHHHhh----cCc--EEEEEecCHHHHHhhcCeEE
Q 007982 200 FSGGWRMRIALARALF--INPTILLLDEPTNHLDLEA-CVWLEETLKK----FDR--ILVVISHSQDFLNGVCTNII 267 (582)
Q Consensus 200 LSGGqrqRv~LAraL~--~~P~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tviivsHd~~~~~~~~d~i~ 267 (582)
+|+|++ .+++.+. ..|.+|++ |.+|... ...+.+.+.+ ++. .+.+++|+-+-+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 5566666 78999998 8999765 4545444443 343 56667777666666666554
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0014 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999985
No 456
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.47 E-value=0.0011 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999984
No 457
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.47 E-value=0.015 Score=61.78 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 007982 392 LDSRVALVGPNGAGKSTLLKLMTGDLVP 419 (582)
Q Consensus 392 ~Ge~~aivG~NGsGKSTLl~ll~Gl~~p 419 (582)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999877654
No 458
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.46 E-value=0.00029 Score=72.63 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=32.1
Q ss_pred eeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCC
Q 007982 382 IYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 382 ~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56778888889998 9999999999999999999864
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.42 E-value=0.0012 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=25.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
.+.+|.+++|+|++||||||+.+.|+....
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999999999987654
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0014 Score=63.54 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.1
Q ss_pred EecCCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 390 VDLDSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 390 i~~Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999999998743
No 461
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.40 E-value=0.00023 Score=72.00 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=38.1
Q ss_pred EEeeeEEEECCeeeeEe-eeEEEeCCcEEEEECCCCCcHHHHHHHHhcCCCCC
Q 007982 74 RIESLSVTFHGHDLIVD-SELELNYGRRYGLLGLNGCGKSTLLTAIGEIEASD 125 (582)
Q Consensus 74 ~v~nls~~y~~~~il~~-vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~~~~ 125 (582)
-.+++++.|++.. .+ ++|+.+ |.+++++|+||+||||++..|++.....
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3456666776543 56 788766 9999999999999999999998766543
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.40 E-value=0.00082 Score=62.38 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLVPL 420 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~p~ 420 (582)
-.+++|+|++|||||||++.|.+.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
No 463
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.36 E-value=0.0055 Score=59.08 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHhhcCcEEEEEecC----------HHHHHhhcCeEEEEe
Q 007982 217 NPTILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHS----------QDFLNGVCTNIIHMQ 270 (582)
Q Consensus 217 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tviivsHd----------~~~~~~~~d~i~~l~ 270 (582)
+|+++++||--. |+.+..+.+ ..|.+.+.+||++-|+ ...+..+||+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 877655544 4455568899999994 345556999999875
No 464
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.0018 Score=59.74 Aligned_cols=22 Identities=41% Similarity=0.785 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGD 416 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl 416 (582)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 465
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.35 E-value=0.025 Score=58.68 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 94 ELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 94 ~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
-+++|+++.|.||.|+|||||...++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 36899999999999999999987765
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.00022 Score=73.35 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=36.6
Q ss_pred ceeeEeeeEEEecCCE--EEEEcCCCCcHHHHHHHHhCCCCCCCc
Q 007982 380 NLIYKNLDFGVDLDSR--VALVGPNGAGKSTLLKLMTGDLVPLDG 422 (582)
Q Consensus 380 ~~~l~~vsl~i~~Ge~--~aivG~NGsGKSTLl~ll~Gl~~p~~G 422 (582)
..+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 4577888888999988 999999999999999999998765443
No 467
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0018 Score=58.83 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.002 Score=59.36 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|++|+|||||++.|.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 469
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.29 E-value=0.0022 Score=58.86 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998543
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.27 E-value=0.0021 Score=59.45 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 471
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.23 E-value=0.0021 Score=58.34 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 472
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.0015 Score=64.08 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=22.3
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 90 DSELELNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 90 ~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
++++.++.| +.|+||+|+|||||+++|++..
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 334444444 8999999999999999998643
No 473
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0028 Score=65.41 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+..+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999974
No 474
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.17 E-value=0.0028 Score=58.08 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987653
No 475
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.16 E-value=0.0014 Score=64.20 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 007982 396 VALVGPNGAGKSTLLKLMTGDLV 418 (582)
Q Consensus 396 ~aivG~NGsGKSTLl~ll~Gl~~ 418 (582)
+.|+||+|+|||||++.|++.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998653
No 476
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.14 E-value=0.0028 Score=58.71 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhcCC
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
.+++|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 579999999999999999997643
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.12 E-value=0.0016 Score=63.39 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.11 E-value=0.057 Score=58.33 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=25.8
Q ss_pred eEeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007982 88 IVDSELELNYGRRYGLLGLNGCGKSTLLTAIG 119 (582)
Q Consensus 88 l~~vsl~i~~Ge~~~LvG~NGsGKSTLl~~l~ 119 (582)
|+.+---+.+|+++.|.|++|+|||||+--++
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a 263 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQA 263 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHH
Confidence 34333247899999999999999999987775
No 479
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.11 E-value=0.0028 Score=57.46 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007982 100 RYGLLGLNGCGKSTLLTAI 118 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l 118 (582)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 480
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.10 E-value=0.003 Score=58.38 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
|.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
No 481
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0028 Score=61.55 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhc
Q 007982 98 GRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 98 Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 482
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0042 Score=59.95 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecC----------HHHHHhhcCEEEEEe
Q 007982 503 QPHMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHD----------FRLINQVAHEIWVCE 556 (582)
Q Consensus 503 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd----------~~~~~~~~d~i~~l~ 556 (582)
+|+++++||-- .|+.+..+.+.. +.+.+..||++-|+ ...+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 59999999996 488776555544 44458899999993 334446899998753
No 483
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.07 E-value=0.0027 Score=58.33 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 007982 100 RYGLLGLNGCGKSTLLTAIGEI 121 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~~ 121 (582)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 484
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.02 E-value=0.0033 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 485
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.00 E-value=0.0033 Score=56.97 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 007982 395 RVALVGPNGAGKSTLLKLM 413 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll 413 (582)
+++|+||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 486
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.98 E-value=0.0038 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 007982 393 DSRVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 393 Ge~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
|-++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999997644
No 487
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.96 E-value=0.0036 Score=58.55 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999985
No 488
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.96 E-value=0.0028 Score=58.78 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999974
No 489
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.94 E-value=0.0032 Score=57.79 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 490
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0036 Score=61.50 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 007982 100 RYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 100 ~~~LvG~NGsGKSTLl~~l~~ 120 (582)
+++|+||||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999974
No 491
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.92 E-value=0.0026 Score=62.45 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=24.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhcCC
Q 007982 95 LNYGRRYGLLGLNGCGKSTLLTAIGEIE 122 (582)
Q Consensus 95 i~~Ge~~~LvG~NGsGKSTLl~~l~~~~ 122 (582)
...+.++.|+|++||||||+.+.|+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999999998644
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.91 E-value=0.014 Score=62.27 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHHhcCCCceeecCCCCCCCHHHHHHH-HHHHhhcCcE--EEEEec
Q 007982 200 FSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWL-EETLKKFDRI--LVVISH 254 (582)
Q Consensus 200 LSGGqrqRv~LAraL~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~~~~t--viivsH 254 (582)
|+..+.+|+.-|...+.+.++.|.|+|. +++...... ..+.++.+.. +|+|-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8888899999888888888999999874 666554433 3344455656 777754
No 493
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.91 E-value=0.0042 Score=57.37 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999999974
No 494
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0039 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998854
No 495
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0034 Score=61.69 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 007982 395 RVALVGPNGAGKSTLLKLMTGDL 417 (582)
Q Consensus 395 ~~aivG~NGsGKSTLl~ll~Gl~ 417 (582)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.86 E-value=0.082 Score=57.12 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.9
Q ss_pred EEecCCEEEEEcCCCCcHHHHHHHHhC
Q 007982 389 GVDLDSRVALVGPNGAGKSTLLKLMTG 415 (582)
Q Consensus 389 ~i~~Ge~~aivG~NGsGKSTLl~ll~G 415 (582)
.+.+|+.+.|.|++|+|||||+--++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 588999999999999999999776654
No 497
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.85 E-value=0.0041 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhc
Q 007982 96 NYGRRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 96 ~~Ge~~~LvG~NGsGKSTLl~~l~~ 120 (582)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999973
No 498
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.84 E-value=0.0039 Score=58.37 Aligned_cols=18 Identities=44% Similarity=0.612 Sum_probs=0.0
Q ss_pred EEEECCCCCcHHHHHHHH
Q 007982 101 YGLLGLNGCGKSTLLTAI 118 (582)
Q Consensus 101 ~~LvG~NGsGKSTLl~~l 118 (582)
+.|+||||||||||++.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
No 499
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.83 E-value=0.053 Score=57.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhcCCC
Q 007982 97 YGRRYGLLGLNGCGKSTLLTAIGEIEA 123 (582)
Q Consensus 97 ~Ge~~~LvG~NGsGKSTLl~~l~~~~~ 123 (582)
++.+++++|++|+||||++..|+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999985443
No 500
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.83 E-value=0.0045 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhc
Q 007982 99 RRYGLLGLNGCGKSTLLTAIGE 120 (582)
Q Consensus 99 e~~~LvG~NGsGKSTLl~~l~~ 120 (582)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
Done!