BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007984
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
LD+ ++ +S N I + LT L + N L +P I +LS L LDL NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
+ C L FY +N ++ LP E G L L L + N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%)
Query: 69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
L L++S+ ++ + A I + L L ++ NS+ ++P EI + + L D S N+L
Sbjct: 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284
Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
LP+ LG C L F +N +T+LP + + + L VEGN L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L N++ +L +++NL L VL++SHN+L+ LPA +G LK N + +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 107 PDEIGSATALVKFDCSSNQLKE 128
P E G+ L N L++
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLEK 330
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
L L G +L+ +P+EI + LDLS N + LP EL SC L+ N + P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS 151
+ +LD+S I I I L + + N L ELP+ + NL S+N +TS
Sbjct: 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284
Query: 152 LPEDLADCSKMSKLDVEGNKLTVL 175
LP +L C ++ N +T L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTL 308
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
L L + + I + I++ +T+L L+ NS+ ELP E+ + ++L+ L LS N++ P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
D S+ Q+ + +++ + L+ + N +T LP ++ + S + LD+ N+LT L L
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
S L N++ +P G+L L L + N
Sbjct: 290 -GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 507 NSLQSIPEGFKNLTSLTELDLSDN----------------------NISAXXXXXXXXXX 544
NSL +P KNL++L LDLS N N+
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
Query: 545 XXQALRLDGNPL-RSIRRTILDRGTKAVLKYLKDKIPE 581
Q L ++GNPL + + + ++ ++ YL+D PE
Sbjct: 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46 DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
D L L +N+I +L K+D + L L L + +NK+S++ A L L+ L +S N +
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
++IP + S+ LV+ N+++++P + L N++ + N + + D
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
K++ L + KLT + +L + L EL N + + E + S+L RL L N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
I S+S +L E ++ NN LS +PA L L L + LH+N + + V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXXX 495
NN + ++ D FK + L L L N S FS L LQ+LY+
Sbjct: 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI------------- 109
Query: 496 XXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNP 555
S+N L IP +SL EL + DN I + + GNP
Sbjct: 110 ---------SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 556 LRS 558
L +
Sbjct: 159 LEN 161
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPL 439
++ KL +S+N + E+PP L S SL L + N+I+ P + NPL
Sbjct: 103 KLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 36/252 (14%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
N + + + L + + + +K+L L+ LS++PS+ + +TKL L + N +
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
Q LP + +L+TL ++ NK++ P + D N L+ +P F +
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQ 510
L L L YN + SLP+ F L L+EL L N L+
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLY----------------------NNQLK 170
Query: 511 SIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTK 569
+PEG F LT L L L +N + + L+L NP I+
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII----- 225
Query: 570 AVLKYLKDKIPE 581
+ K+LK K E
Sbjct: 226 YMAKWLKKKADE 237
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKAS-------------------NNCITSLPEDL- 156
DCSS +L +PS++ + L+L K S +N + +LP +
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
+ + L V NKL L + L EL +N L + P SL++L L L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 216 QNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
N + S+P + SL E + NN L +P KL++L TL L +NQLK
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 45 VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
D +KL L N + L + L L +L ++ NKL LPA I EL L++L V+ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SK 161
+ +P IG LV NL++ + N + SLP + D +K
Sbjct: 97 LQALP--IGVFDQLV--------------------NLAELRLDRNQLKSLPPRVFDSLTK 134
Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 220
++ L + N+L L + T L EL N L +PE L+ L L L N++
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 221 SIP 223
+P
Sbjct: 195 RVP 197
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
+ L+L G L I S + E +T L L+ N +Q LP +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
PD + +N L+ +P F + L LDLSYN + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
++L L QN L+S+P+G F LTSL + L DN
Sbjct: 184 KDLRLY----------------------QNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
L + + ++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
N++ S+P + +L E + N L +LP KL++L L L+ NQLK
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 51 ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
I+A+N+ K + ++ LP + L + NKL ++ +A+ EL L L ++ N + +P+ +
Sbjct: 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 111 GSA-TALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDV 167
T L + NQL+ LP + NL+ ++N + SLP+ + D + +++LD+
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLD---LHQN 217
N+L L + T L +L +N L +P+ G RL L LH N
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 215
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTXXXXXXXXXXXX 503
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 504 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 561
+ N LQS+P+G F LT+LTELDLS N + + + LRL N L+S+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 562 TILDRGTKAVLKYLKD 577
+ DR T +L D
Sbjct: 199 GVFDRLTSLQYIWLHD 214
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 46 DLQKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
+L++L+L N ++ L + + + L LT LN++HN+L LP + +L L LD+S+N +
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 104 MKIPDEIGSA-TALVKFDCSSNQLKELPSSL 133
+P+ + T L NQLK +P +
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 356 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 413
++ + L ++P +++ +T+LDLS N +Q LP L+ L L +N
Sbjct: 139 NLAHNQ-------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 414 KIKDWPDAI 422
++K PD +
Sbjct: 192 QLKSVPDGV 200
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L+ L++ +NN++ L DL PLL L VS+N+L +LP + LK +DV NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
PD S + +NQL+ELP L L+ A NN + LP DL L
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
+E V NN+ + + LT + A NLL +P+ SL L D + +
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
+P S++ + G LS LP L L+ SN+++ C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 51 ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
I+A NNI + +L+NLP LT + +N L LP L++L+V N + +P+
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPELP 276
Query: 111 GSATALVKFDCSSN---QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS---KMSK 164
S T L D S N L ELP NL AS+N I SL C + +
Sbjct: 277 QSLTFL---DVSENIFSGLSELPP------NLYYLNASSNEIRSL------CDLPPSLEE 321
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
L+V NKL L A L LIAS N L +PE +L +L
Sbjct: 322 LNVSNNKLIELP----ALPPRLERLIASFNHLAEVPELPQNLKQL 362
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 91/209 (43%), Gaps = 41/209 (19%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L+ + +N +E+L E L+NLP LT + +N L +LP L +S SI+
Sbjct: 175 LEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLP----------DLPLSLESIV-- 221
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
+N L+ELP L L+ A NN + +LP DL + L+
Sbjct: 222 --------------AGNNILEELP-ELQNLPFLTTIYADNNLLKTLP-DLP--PSLEALN 263
Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
V N LT L L S T L S+N+ +G+ E + L L+ N I S+
Sbjct: 264 VRDNYLTDLP-ELPQSLTFLD---VSENIFSGLSELPPN---LYYLNASSNEIRSL---C 313
Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL 255
SL E + NN L LPA +L +L
Sbjct: 314 DLPPSLEELNVSNNKLIELPALPPRLERL 342
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
N+ + L ELP L+SL S NS+ ++P+ S +L+ + + L +LP L
Sbjct: 80 NLGLSSLPELPPH------LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133
Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
SNN + LPE L + S + +DV+ N L L +L S + A
Sbjct: 134 EY------LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIA---AGN 182
Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLS 253
N L +PE + +L L + N + +P SL GNN L LP EL L
Sbjct: 183 NQLEELPE-LQNLPFLTAIYADNNSLKKLP---DLPLSLESIVAGNNILEELP-ELQNLP 237
Query: 254 KLGTLDLHSNQLK 266
L T+ +N LK
Sbjct: 238 FLTTIYADNNLLK 250
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
P L L+VS N+L+ LPA EL L + + S+ +P + L + S NQL
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
LP+ L A NN +TSLP A S + +L V GN+LT L
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
+P S L L + NR+ S+P SG SL+ + N L+ LP
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
L LS T++L N L E ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 30/200 (15%)
Query: 70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
+T L + N L+ LPA EL ++L+VS N + +P L F L L
Sbjct: 63 ITTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119
Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
PS L + L + S+N + SLP A S++ KL N+LT L
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSL 176
Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
++ S L EL S N L +P S L +L + NR+ S+P+ SG L E
Sbjct: 177 P--MLPS--GLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 226
Query: 236 YMGNNALSALPAELGKLSKL 255
+ N L++LP +L +L
Sbjct: 227 IVSGNRLTSLPVLPSELKEL 246
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
+ P E +V+ CS+ LK LP + R ++++ N T +P++L++ ++
Sbjct: 3 RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
+D+ N+++ LSN ++ T L LI S N L + P T L L L LH N I +P
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
+ + +L+ +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWP 419
EL L+G + +P E+ +T +DLS N I L + S+ L TLILS N+++ P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 420 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
N + VP F D+ L L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLR 440
++T+L L N +P ELS+ L + LS N+I + N LR
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENP--PFSSLPHL 477
+P F + L++L L N I+ +PE S+L HL
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 55/159 (34%), Gaps = 28/159 (17%)
Query: 400 SSCASLQTLILSRNK-IKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDL 458
+ C L T++ NK +K P I D N VP + + L ++DL
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYL---DGNQFTLVPKE-LSNYKHLTLIDL 61
Query: 459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSI-PEGFK 517
S N S N FS++ L L L S N L+ I P F
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLIL----------------------SYNRLRCIPPRTFD 99
Query: 518 NLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPL 556
L SL L L N+IS L + NPL
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 70 LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
L LNVS N L + P + +L+ L+ LD+S NSI S +V + S
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
+LK L S + RC+NL S+N ++ L DCS + LD+ GNKL+
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLA 233
+ I++ T L L S N G P L L L L +N+ IP +SG C +L
Sbjct: 236 FSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 234 EFYM-GNNALSALPAELG 250
+ GN+ A+P G
Sbjct: 295 GLDLSGNHFYGAVPPFFG 312
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 111/297 (37%), Gaps = 78/297 (26%)
Query: 47 LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI- 103
LQ+L L +N K+ L N L L++S N LS +P+++G L L+ L + N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 104 MKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITS----------- 151
+IP E+ L N L E+PS L C NL+ SNN +T
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 152 --------------LPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNL 195
+P +L DC + LD+ N T+ + S + IA K
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 196 L----NGMPE-----------------------------------------TIGSLSRLI 210
+ +GM + T + ++
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 211 RLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQL 265
LD+ N + IP I L +G+N +S +P E+G L L LDL SN+L
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 60 LKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI-MKIPDEIGSATALV 117
+ +++ ++P L +LN+ HN +S +P +G+L L LD+S N + +IP + + T L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 118 KFDCSSNQL 126
+ D S+N L
Sbjct: 705 EIDLSNNNL 713
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQL- 126
+ L++S+N LS +P IG + L L++ N I IPDE+G L D SSN+L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 127 KELPSSLGRCLNLSDFKASNNCITS-LPE 154
+P ++ L++ SNN ++ +PE
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 96 LDVSFNSIMK-IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
LD+S+N + IP EIGS L + N + S+P+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----------------------GSIPD 671
Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPE 201
++ D ++ LD+ NKL +++ TMLTE+ S N L+G +PE
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ--LREAPTXXXXXXXXXXXXX 504
F + + LD+SYN+ S S+P+L L L P
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 505 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 534
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N++
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 221 S-IPSSISGCCSLAEFYMGNNALSALPAELGKL 252
IP ++S L E + NN LS E+G+
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70 LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
L LNVS N L + P + +L+ L+ LD+S NSI S +V + S
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
+LK L S + RC+NL +SNN T +P L DCS + LD+ GNKL+
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
+ I++ T L L S N G P L L L L +N+ IP +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
+ GN+ A+P G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 111/297 (37%), Gaps = 78/297 (26%)
Query: 47 LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI- 103
LQ+L L +N K+ L N L L++S N LS +P+++G L L+ L + N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 104 MKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS----------- 151
+IP E+ L N L E+PS L C NL+ SNN +T
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 152 --------------LPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNL 195
+P +L DC + LD+ N T+ + S + IA K
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 196 L----NGMPE-----------------------------------------TIGSLSRLI 210
+ +GM + T + ++
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 211 RLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQL 265
LD+ N + IP I L +G+N +S +P E+G L L LDL SN+L
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 60 LKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI-MKIPDEIGSATALV 117
+ +++ ++P L +LN+ HN +S +P +G+L L LD+S N + +IP + + T L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 118 KFDCSSNQL 126
+ D S+N L
Sbjct: 708 EIDLSNNNL 716
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQL- 126
+ L++S+N LS +P IG + L L++ N I IPDE+G L D SSN+L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 127 KELPSSLGRCLNLSDFKASNNCITS-LPE 154
+P ++ L++ SNN ++ +PE
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 96 LDVSFNSIMK-IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
LD+S+N + IP EIGS L + N + S+P+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----------------------GSIPD 674
Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPE 201
++ D ++ LD+ NKL +++ TMLTE+ S N L+G +PE
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ--LREAPTXXXXXXXXXXXXX 504
F + + LD+SYN+ S S+P+L L L P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 505 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 534
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N++
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 221 S-IPSSISGCCSLAEFYMGNNALSALPAELGKL 252
IP ++S L E + NN LS E+G+
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
L + + ++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
+ N++ S+P + +L + NN L +LP KL++L L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 51 ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
I+A+N+ K + ++ LP + L + NKL ++ +A+ EL L L ++ N + +P+ +
Sbjct: 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 111 GSA-TALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDV 167
T L + NQL+ LP + NL+ +N + SLP+ + D + +++LD+
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
+ N+L L + T L +L + N L +P+ G RL L
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD--GVFDRLTSL 207
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
+ L+L G L I S + E +T L L+ N +Q LP +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
PD + +N L+ +P F + L LDL N + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
++L L + N L+S+P+G F LTSLT + L +N
Sbjct: 184 KQLSL----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTXXXXXXXXXXXX 503
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 504 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 561
N LQS+P+G F LT+LT LDL +N + + + L L+ N L+S+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 562 TILDRGT 568
+ DR T
Sbjct: 199 GVFDRLT 205
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 356 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 413
+ + L ++P +++ +T+LDL N +Q LP L+ L L+ N
Sbjct: 139 YLYHNQ-------LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 414 KIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSD 445
++K PD + NNP SD
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
++ + ++ +TS+P + S ++L++E NKL L + + T LT+L S+N + +
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
P+ + L++L L LH+N++ S+P+ + L E + N L ++P +L+ L
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
+ LH+N C
Sbjct: 128 KIWLHTNPWDCSC 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
+E + L ++ T + ++ L LE L ++P +++ ++TKL LS+N IQ LP
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
L L L NK++ P+ + D N L+ VP F + LQ +
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
L N
Sbjct: 130 WLHTN 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
+R S + E+ L+++P+ I T+L+L N +Q LP L L LS
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 412 RNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
+N+I+ PD + N L+ +P+ F + L+ L L N + S+P+
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-I 119
Query: 471 FSSLPHLQELYLR 483
F L LQ+++L
Sbjct: 120 FDRLTSLQKIWLH 132
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 505 SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 563
SQN +QS+P+G F LT LT L L +N + + + L LD N L+S+ I
Sbjct: 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Query: 564 LDRGT 568
DR T
Sbjct: 120 FDRLT 124
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 45 VDLQKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
L KL L+ N I+ L + + + L LT+L + NKL LP + +L LK L + N
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 103 IMKIPDEI 110
+ +PD I
Sbjct: 112 LKSVPDGI 119
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 24/124 (19%)
Query: 96 LDVSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
L++ N + +P + T L K S NQ++ LP +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------------------- 71
Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLD 213
+K++ L + NKL L N + T L EL N L +P+ I L+ L ++
Sbjct: 72 -FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130
Query: 214 LHQN 217
LH N
Sbjct: 131 LHTN 134
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
TS+P + ++ + LD+E N L L N + T LT+L N L +P + L+
Sbjct: 20 TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
L L+L N++ S+P+ + L E + N L +LP KL++L L L+ NQLK
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-CSKMS 163
+P I + T + D +N LK LP+ + L +L+ N + SLP + + + ++
Sbjct: 22 VPTGIPAQTTYL--DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
L++ N+L L N + T L EL + N L +P+ + L++L L L+QN++ S+
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Query: 223 PSSI 226
P +
Sbjct: 140 PDGV 143
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 43 EAVDLQKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSF 100
E L +L L N ++ L + N L LT LN+S N+L LP + +L LK L ++
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 101 NSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSL 133
N + +PD + T L NQLK +P +
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXX-SQNSLQSI 512
LDL N + SLP N F L L +LYL +L+ P S N LQS+
Sbjct: 33 LDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 513 PEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAV 571
P G F LT L EL L+ N + + + LRL N L+S+ + DR T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 572 LKYLKD 577
+L D
Sbjct: 152 YIWLHD 157
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 361 ELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
+L L G L ++P+ ++ + +T L+LS N +Q LP L+ L L+ N+++
Sbjct: 56 QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
PD + N L+ VP F + LQ + L N
Sbjct: 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
A +QKL + N I L +N+PLLTVL + N LS LP I H L +L +S
Sbjct: 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
N++ +I D+ A T+L SSN+L + SL L F A N +L LA
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
+ +LD N + V+ + T+L K N + +T L+ L+ +DL
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
N + I L Y+ NN L AL + L LDL N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 362 LSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWP 419
L+L + + I + + A I KL + N+I+ LPP + L T L+L RN + P
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 420 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
I NN L ++ D F+ LQ L LS N
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 436 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPT 491
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 492 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 549
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 550 RLDGNPLRSI 559
+L N L +
Sbjct: 177 QLSSNRLTHV 186
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 58 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
A +QKL + N I L +N+PLLTVL + N LS LP I H L +L +S
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
N++ +I D+ A T+L SSN+L + SL L F A N +L LA
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
+ +LD N + V+ + T+L K N + +T L+ L+ +DL
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
N + I L Y+ NN L AL + L LDL N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWPDAIXXXXXXXXXXXXDNN 437
A I KL + N+I+ LPP + L T L+L RN + P I NN
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 438 PLRQVPSDGFKDIPMLQILDLSYN 461
L ++ D F+ LQ L LS N
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSN 175
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 436 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPT 491
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 492 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 549
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 550 RLDGNPLRSIRRTILDRGTKAVLKY 574
+L N L + +++ A + Y
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSY 195
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70 LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
+TVLN++HN+L LPAA L SLDV FN+I K+ E+ ++K + N+L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
+L + C NL++ +N I + + + LD+ N L+
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 15 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 73 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 268 Y---CVEA 272
+ C A
Sbjct: 191 FSPGCFHA 198
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 47 LQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELP-------AAIGELHMLKSLDV 98
L L + N I KL+ +L + LP+L VLN+ HN+LS+L + ELH++
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS---- 111
Query: 99 SFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPE 154
NSI KI + L+ D S N L + LG + NL + SNN I +L
Sbjct: 112 --NSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKS 167
Query: 155 ---DLADCSKMSKLDVEGNKLTVLS 176
D+ S + KL++ N++ S
Sbjct: 168 EELDIFANSSLKKLELSSNQIKEFS 192
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 346 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 403
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 26 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 78
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 79 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70 LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
+TVLN++HN+L LPAA L SLDV FN+I K+ E+ ++K + N+L
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
+L + C NL++ +N I + + + LD+ N L+
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 20 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 78 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 136 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 195
Query: 268 Y---CVEA 272
+ C A
Sbjct: 196 FSPGCFHA 203
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 47 LQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELP-------AAIGELHMLKSLDV 98
L L + N I KL+ +L + LP+L VLN+ HN+LS+L + ELH++
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS---- 116
Query: 99 SFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPE 154
NSI KI + L+ D S N L + LG + NL + SNN I +L
Sbjct: 117 --NSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKS 172
Query: 155 ---DLADCSKMSKLDVEGNKLTVLS 176
D+ S + KL++ N++ S
Sbjct: 173 EELDIFANSSLKKLELSSNQIKEFS 197
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 346 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 403
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 31 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 83
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 84 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70 LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
+TVLN++HN+L LPAA L SLDV FN+I K+ E+ ++K + N+L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
+L + C NL++ +N I + + + LD+ N L+
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 10 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 68 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 268 Y---CVEA 272
+ C A
Sbjct: 186 FSPGCFHA 193
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 47 LQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELP-------AAIGELHMLKSLDV 98
L L + N I KL+ +L + LP+L VLN+ HN+LS+L + ELH++
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS---- 106
Query: 99 SFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPE 154
NSI KI + L+ D S N L + LG + NL + SNN I +L
Sbjct: 107 --NSIQKIKNNPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKS 162
Query: 155 ---DLADCSKMSKLDVEGNKLTVLS 176
D+ S + KL++ N++ S
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFS 187
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 346 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 403
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 73
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 58 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 58 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N+LT L L+ L L+ +N L +P+ L LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 58 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N+LT L L+ L L+ +N L +P+ L LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 181
NQ+ +L P +NL + +N + +LP + D ++++ LD+ N+LTVL + +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN 240
L EL N L +P I L+ L L L QN++ SIP + SL Y+ N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
+A PS+ +G T +D +P + + A Q L L N+I +
Sbjct: 11 AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLRE 488
+N L +P F + L +LDL N ++ + F L HL+EL++ +L E
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 489 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
P QN L+SIP G F L+SLT L N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 45 VDLQKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNS 102
++L++L L N + L + + L LTVL++ N+L+ LP+A+ + L LK L + N
Sbjct: 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELP 130
+ ++P I T L NQLK +P
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 212 LDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQL 265
L LH N+I + P +L E Y+G+N L ALP L++L LDL +NQL
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 72 VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
+L + N++++L P L LK L + N + +P + S T L D +NQL L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 130 PSS-LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
PS+ R ++L + N +T LP + + ++ L ++ N+L + + + LT
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N+LT L L+ L L+ +N L +P+ L LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 559
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N+LT L L+ L L+ +N L +P+ L LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 559
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
P +G+ L + N+LK LP L L K+
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
KL + N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
P +G+ L + N+LK LP L L K+
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
KL + N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
P +G+ L + N+LK LP L L K+
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
KL + N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 62 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 119
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +
Sbjct: 120 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 175 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 233 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 263
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 264 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 310
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L + NK+ D
Sbjct: 311 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 58 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 6 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 63
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 64 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 121
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 122 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 145
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
P +G+ L + N+LK LP L L K+
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
KL + N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRDLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
L +L L + KL+ D LP+L L++SHN+L LP L L LDVSFN + +
Sbjct: 57 LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
P + L + N+LK LP L L K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
+ N LT L L+ L L+ +N L +P+ L LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRDLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
EA + DLS++ I L S L+ L L++N+I D
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXXXX 496
N L + S F+++ L++LDLSYN + F LP+L+EL L
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-------------- 378
Query: 497 XXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
N L+S+P+G F LTSL ++ L N
Sbjct: 379 --------DTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 505 SQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 563
SQN L SI F+NL L LDLS N+I A + L LD N L+S+ I
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 564 LDRGT 568
DR T
Sbjct: 391 FDRLT 395
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 63 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 72/185 (38%), Gaps = 29/185 (15%)
Query: 385 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 443
L LSRN I+ + + A+L TL L N++ P+ NNP+ +P
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 444 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXX 500
S F IP L+ LDL ++ + E F L +L+ L L M LRE P
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIP---------- 201
Query: 501 XXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIR 560
L L ELDLS N++SA Q L + + ++ I
Sbjct: 202 --------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 561 RTILD 565
R D
Sbjct: 248 RNAFD 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+
Sbjct: 58 GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
NN IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
K+ A +T L L L N + L P L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
K +L N+ S S +A ++T+ EL+ LE + S I +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-----A 352
T+L+ L L+ N + T+ S+ + L + S L + + + +LI +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 353 TRLS---VTSKELSLEGMNLSA-------IPSEIWEAGEITKLDLSRNSIQEL-PPELSS 401
TR++ + + SLE + ++ +P E +T LDLS+ +++L P +S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 402 CASLQTLILSRNKIKDWPDAI 422
+SLQ L ++ N++K PD I
Sbjct: 493 LSSLQVLNMASNQLKSVPDGI 513
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 30/206 (14%)
Query: 66 NLPLLTVLNVSHNKLSELPAAIGELHM----LKSLDVSFNSIMKIPDEIGSATALVKFDC 121
+LP L L++S N LS + LK LD+SFN ++ + L D
Sbjct: 345 DLPSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
+ LK++ S F + N I LD+ V N +
Sbjct: 404 QHSNLKQMSE-------FSVFLSLRNLI--------------YLDISHTHTRVAFNGIFN 442
Query: 182 SWTMLTELIASKNLL--NGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMG 238
+ L L + N N +P+ L L LDL Q ++ + P++ + SL M
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 239 NNALSALP-AELGKLSKLGTLDLHSN 263
+N L ++P +L+ L + LH+N
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 507 NSLQS--IPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
NS Q +P+ F L +LT LDLS + Q L + N L+S+ I
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514
Query: 565 DRGT 568
DR T
Sbjct: 515 DRLT 518
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 41 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 154 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 175 LEHLDLSSNKIQSI 188
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 546
QN + + P F++L L L L NN+SA
Sbjct: 185 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 226
Query: 547 QALRLDGNP 555
Q LRL+ NP
Sbjct: 227 QYLRLNDNP 235
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 211
P ++ L ++ L L L L L N L +P+ T L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 212 LDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 270 VEA 272
EA
Sbjct: 217 TEA 219
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL--RMQLREA-PTX 492
N + VP+ F+ L IL L N+ + + F+ L L++L L QLR P
Sbjct: 40 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 99
Query: 493 XXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRL 551
+ LQ + G F+ L +L L L DN + A L L
Sbjct: 100 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 159
Query: 552 DGNPLRSI 559
GN + S+
Sbjct: 160 HGNRISSV 167
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ L N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 153 LEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 423
E +N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 16 EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 424 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 482
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 483 RMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 ----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 152 LEHLDLSSNKIQSI 165
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 50/189 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 546
QN + + P F++L L L L NN+SA
Sbjct: 186 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227
Query: 547 QALRLDGNP 555
Q LRL+ NP
Sbjct: 228 QYLRLNDNP 236
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 211
P ++ L ++ L L L L L N L +P+ T L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 212 LDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 270 VEA 272
EA
Sbjct: 218 TEA 220
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL--RMQLREA-PTX 492
N + VP+ F+ L IL L N+ + + F+ L L++L L QLR P
Sbjct: 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 493 XXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRL 551
+ LQ + G F+ L +L L L DN + A L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 552 DGNPLRSI 559
GN + S+
Sbjct: 161 HGNRISSV 168
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
D+ + LQ + + +L + + L L ++ N L LPA+I L+ L+ L +
Sbjct: 98 DQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 99 -SFNSIMKIPDEIGSATA---------LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
+ + ++P+ + S A L ++ LP+S+ NL K N+
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNN--LIASWTMLTELIAS--KNLLNGMPETIG 204
+++L + K+ +LD+ G T L N + L LI NLL +P I
Sbjct: 218 LSALGPAIHHLPKLEELDLRG--CTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIH 274
Query: 205 SLSRLIRLDL 214
L++L +LDL
Sbjct: 275 RLTQLEKLDL 284
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 95 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
+L++ + + PD+ + L + L ELP + + L + N + +LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDL 214
+A +++ +L + T L E +AS + E G L L L L
Sbjct: 145 SIASLNRLRELSIRA----------CPELTELPEPLASTD---ASGEHQG-LVNLQSLRL 190
Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS-NQLKEY 268
I S+P+SI+ +L + N+ LSAL + L KL LDL L+ Y
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 80 LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL 139
L + P L L+ + + ++PD L + N L+ LP+S+ L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 140 SDFKASNNC--ITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIAS---- 192
+ + C +T LPE LA D G +++ +L WT + L AS
Sbjct: 153 REL-SIRACPELTELPEPLAST------DASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 193 KNL---------LNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA- 241
+NL L+ + I L +L LDL L + P G L + + +
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 242 LSALPAELGKLSKLGTLDL 260
L LP ++ +L++L LDL
Sbjct: 266 LLTLPLDIHRLTQLEKLDL 284
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
E A DL+ AT+ + L L + L P + + + + + E
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVA--LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXE 118
Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAI 422
LP A L+TL L+RN ++ P +I
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASI 146
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+S+N + + S L D S +++ + + L +LS + N I S
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 153 LEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 18 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 132
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+S+N + + S L D S +++ + + L +LS + N I S
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 152 LEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 131
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 534
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 132 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 94 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 152 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 208
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 209 LIRLDLHQNRILSI 222
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 36/276 (13%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
N+ S+ T+ L + + ++ L+L N+ I ++ + + L L RNSI++
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
+ + ASL TL L N + P NNP+ +PS F +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 454 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRM----QL 486
LDL +N+ ++ + P + L L+EL + ++
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 487 REAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 546
R SQ SL F L SL EL+L+ NN+S+
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Query: 547 QALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 582
L L NP D + +L++ IP N
Sbjct: 293 VELHLHHNPWNC------DCDILWLAWWLREYIPTN 322
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
P +TVL ++ N L LP L L + D +++ ++P +L D +NQL
Sbjct: 80 PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQLT 133
Query: 128 ELPS--SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
LP +L +N A NN +T LPE + + L V N+LT L L S
Sbjct: 134 XLPELPALLEYIN-----ADNNQLTXLPE---LPTSLEVLSVRNNQLTFLP-ELPES--- 181
Query: 186 LTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIPSSI 226
L L S NLL +P S I +NRI IP +I
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 8/230 (3%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDLS--YNIASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXXSQNSLQ 510
+ LDL + + E F L +L+ L L M L++ P S N L
Sbjct: 134 RRLDLGELKRLEYISE-AAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLD 191
Query: 511 SI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 559
I P F+ LTSL +L L ++ + L L N L S+
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 24/152 (15%)
Query: 42 WEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAA--------IGELHM 92
++ +++ + L++N I K KE L+ +N+ N L+E+P ++
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYL 489
Query: 93 LKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQLKELPSSLGRCLNLSDFKA------ 144
L S+D+ FN + K+ D+ + T LV D S N + P+ + LN S K
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT---QPLNSSTLKGFGIRNQ 546
Query: 145 ----SNNCITSLPEDLADCSKMSKLDVEGNKL 172
N + PE + C +++L + N +
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 110/288 (38%), Gaps = 59/288 (20%)
Query: 39 DKWWEAVD------LQKLILAHNNIEKL--KEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90
D W D +Q + + +NN++ + L+ L L +N+L A G
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSE 352
Query: 91 HMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELPSSLG--------------- 134
L SL++++N I +IP T V+ + N+LK +P+
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYN 412
Query: 135 ------------------RCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVL 175
+ +N+S SNN I+ P++L + S +S +++ GN LT +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEI 472
Query: 176 SNNLI-------ASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSI 226
N + + +LT + N L + + +L L+ +DL N P+
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532
Query: 227 SGCCSLAEFYM-------GNNALSALPAELGKLSKLGTLDLHSNQLKE 267
+L F + GN L P + L L + SN +++
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 126/316 (39%), Gaps = 67/316 (21%)
Query: 236 YMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXXPPE 293
Y+G N L P E L K KLG L+ NQL+ P
Sbjct: 311 YIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKL----------------------PA 348
Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRL---PENEDSEASTTKEDL 348
G L L L N + + ++ G T + L + ++L P D+++
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKS------- 400
Query: 349 ITMATRLSVTSKEL-SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-LQ 406
+++ + + + E+ S++G N + ++ ++ ++LS N I + P EL S S L
Sbjct: 401 VSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 407 TLILSRNKIKDWP-----DAIXXXXXXXXXXXXD--NNPLRQVPSDGFK--DIPMLQILD 457
++ L N + + P D D N L ++ SD F+ +P L +D
Sbjct: 461 SINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGID 519
Query: 458 LSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGF 516
LSYN + P P SS L+ +R Q R+A +L+ PEG
Sbjct: 520 LSYNSFSKFPTQPLNSST--LKGFGIRNQ-RDA--------------QGNRTLREWPEGI 562
Query: 517 KNLTSLTELDLSDNNI 532
SLT+L + N+I
Sbjct: 563 TLCPSLTQLQIGSNDI 578
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 53/238 (22%)
Query: 56 NIEKLKEDLRNLPLLTVLNVSHNK-------------LSELPAAIGELHMLKSLDVSFNS 102
N+ KL L+ LP ++NV+ N+ L++ P +GE ++ + + +N+
Sbjct: 261 NLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAP--VGE--KIQIIYIGYNN 316
Query: 103 IMKIPDE--IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160
+ P E + L +C NQL+ + G + L+ + N IT +P + +
Sbjct: 317 LKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 161 -KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
++ L NKL + N A S+S +D N I
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAK----------------------SVSVXSAIDFSYNEI 414
Query: 220 LSI---------PSSISGCCSLAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKE 267
S+ P+ G +++ + NN +S P EL S L +++L N L E
Sbjct: 415 GSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTE 471
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLI-----RLDL 214
S + LDV N L + + +W E I NL + M GS+ R + LDL
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWA---ESILVLNLSSNM--LTGSVFRCLPPKVKVLDL 457
Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYC 269
H NRI+SIP ++ +L E + +N L ++P +L+ L + LH N C
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 72 VLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
VLN+S N L+ LP + K LD+ N IM IP ++ AL + + +SNQL
Sbjct: 432 VLNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 127 KELP 130
K +P
Sbjct: 486 KSVP 489
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 93 LKSLDVSFNSI--MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNC 148
L++LDVS NS+ A +++ + SSN L S+ RCL + NN
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNR 461
Query: 149 ITSLPEDLADCSKMSKLDVEGNKL 172
I S+P+D+ + +L+V N+L
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQL 485
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNP 438
++ LDL N I +P +++ +LQ L ++ N++K PD + +NP
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 90/243 (37%), Gaps = 52/243 (21%)
Query: 342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSE----------IW---------EAGEI 382
S ++ L + T + +S+ + L G +S +P+ +W +A
Sbjct: 16 SCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF 75
Query: 383 T------KLDLSRNSIQEL--PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXX 434
T +LDLS N+ + P L TL L R +++ +
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXX 493
+N L+ +P + F+D+ L L L N I S+PE+ F L L L L
Sbjct: 136 QDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHA-FRGLHSLDRLLLH---------- 184
Query: 494 XXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 552
QN + + P F++L L L L NN+S Q LRL+
Sbjct: 185 ------------QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLN 232
Query: 553 GNP 555
NP
Sbjct: 233 DNP 235
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 211
P + L ++ L L L L L N L +P+ T L L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQL 265
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 26/173 (15%)
Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
+ +Q +P + AS Q + L N+I P A +N L + + F
Sbjct: 19 QQGLQAVPTGIP--ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFT 76
Query: 449 DIPMLQILDLSYNIASLPENPP-FSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQN 507
+ +L+ LDLS N +P F L HL L+L +
Sbjct: 77 GLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL----------------------DRC 114
Query: 508 SLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 559
LQ + G F+ L +L L L DNN+ A L L GN + S+
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 8/230 (3%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDLS--YNIASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXXSQNSLQ 510
+ LDL + + E F L +L+ L L M L++ P S N L
Sbjct: 134 RRLDLGELKRLEYISE-AAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLD 191
Query: 511 SI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 559
I P F+ LTSL +L L ++ + L L N L S+
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 70 LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
+TVLN++HN+L LP L LD FNSI K+ E+ L+K + N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
++ + C NL++ +N I + + + + KLD+ N L+
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED 155
D S + IPD++ S ++ + + NQL+ LP ++ R L+ A N I+ L +
Sbjct: 10 DCSHLKLTHIPDDLPSNITVL--NLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 156 LADCSKMSK-LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLD 213
L + K L+++ N+L+ +S+ T LTEL N ++ + + LI+LD
Sbjct: 68 LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD 127
Query: 214 LHQNRILS--IPSSISGCCSLAEFYMGNNALSALPAELGKL--SKLGTLDLHSNQLKEY 268
L N + S + + + N L+ EL L S L LDL SN LKE+
Sbjct: 128 LSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEF 186
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 53 AHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIMKI-PDE 109
N+I KL+ +L + LPLL VLN+ HN+LS++ L LD+ NSI KI +
Sbjct: 57 GFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNP 116
Query: 110 IGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLA--DCSKMSKL 165
+ L+K D S N L +L + + A N + E+L S + KL
Sbjct: 117 FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 166 DVEGNKLTVLS 176
D+ N L S
Sbjct: 177 DLSSNPLKEFS 187
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCAS-LQTLILSRNKIKDWPDAIXXXXXXXXX 431
P+ ++ LD NSI +L PEL L+ L L N++ D
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 432 XXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
+N + ++ S+ FK+ L LDLS+N
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 13/228 (5%)
Query: 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
D L L +N I ++K+ D +NL L L + +NK+S++ P A L L+ L +S N +
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN--LSDFKASNNCITSLPEDLA--DC 159
++P+++ L + N++ ++ S+ LN + +N +S E+ A
Sbjct: 113 KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR 218
K+S + + +T + L S LTEL N + + ++ L+ L +L L N
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 219 ILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
I ++ + S++ L E ++ NN L +P L + + LH+N +
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 179
CS L+++P L L D + NN IT + + D + + L + NK++ +S
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMG 238
A L L SKN L +PE + L L +H+N I + S+ +G + +G
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 239 NNALSALPAELGKLSKLGTL 258
N L + E G + L
Sbjct: 154 TNPLKSSGIENGAFQGMKKL 173
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXX 494
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 495 XXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
+ N L +P G + + + L +NNISA
Sbjct: 248 ----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 100/264 (37%), Gaps = 22/264 (8%)
Query: 212 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 270 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LK 327
+ + + + + L NPL++ S + NG + L
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLD 386
Y+R ++ T+ L + EL L+G ++ + + + + KL
Sbjct: 175 YIR------------IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 387 LSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSD 445
LS NSI + L++ L+ L L+ NK+ P + +NN + + S+
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN 281
Query: 446 GFKDIPMLQILDLSYNIASLPENP 469
F P SY+ SL NP
Sbjct: 282 DFCP-PGYNTKKASYSGVSLFSNP 304
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMK 105
L + +A NI + + L P LT L++ NK++++ AA + L+ L L +SFNSI
Sbjct: 173 LSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
+ + SL +L + +NN + +P LAD + +
Sbjct: 231 VDN----------------------GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268
Query: 166 DVEGNKLTVLSNN 178
+ N ++ + +N
Sbjct: 269 YLHNNNISAIGSN 281
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 109/228 (47%), Gaps = 13/228 (5%)
Query: 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
D L L +N I ++K+ D +NL L L + +NK+S++ P A L L+ L +S N +
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN--LSDFKASNNCITSLPEDLA--DC 159
++P+++ L + N++ ++ S+ LN + +N +S E+ A
Sbjct: 113 KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR 218
K+S + + +T + L S LTEL N + + ++ L+ L +L L N
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 219 ILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
I ++ + S++ L E ++ NN L +P L + + LH+N +
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 179
CS L+++P L L D + NN IT + + D + + L + NK++ +S
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMG 238
A L L SKN L +PE + L L +H+N I + S+ +G + +G
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 239 NNALSALPAELGKLSKLGTL 258
N L + E G + L
Sbjct: 154 TNPLKSSGIENGAFQGMKKL 173
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXX 494
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 495 XXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
+ N L +P G + + + L +NNISA
Sbjct: 248 ----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 100/264 (37%), Gaps = 22/264 (8%)
Query: 212 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 269
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 270 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LK 327
+ + + + + L NPL++ S + NG + L
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLD 386
Y+R ++ T+ L + EL L+G ++ + + + + KL
Sbjct: 175 YIR------------IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 387 LSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSD 445
LS NSI + L++ L+ L L+ NK+ P + +NN + + S+
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN 281
Query: 446 GFKDIPMLQILDLSYNIASLPENP 469
F P SY+ SL NP
Sbjct: 282 DFCP-PGYNTKKASYSGVSLFSNP 304
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMK 105
L + +A NI + + L P LT L++ NK++++ AA + L+ L L +SFNSI
Sbjct: 173 LSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
+ + SL +L + +NN + +P LAD + +
Sbjct: 231 VDN----------------------GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268
Query: 166 DVEGNKLTVLSNN 178
+ N ++ + +N
Sbjct: 269 YLHNNNISAIGSN 281
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 266
P + L + Y+G N L +LP+ +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
D +KL L + L + R L LT LN+ +N+L L A + +L L +L ++ N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 103 IMKIP-DEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLAD 158
+ +P T L K NQLK LPS R L + + + N + S+P D
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 565
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 566 RGTK 569
R TK
Sbjct: 129 RLTK 132
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 266
P + L + Y+G N L +LP+ +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
D +KL L + L + R L LT LN+ +N+L L A + +L L +L ++ N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 103 IMKIP-DEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLAD 158
+ +P T L K NQLK LPS R L + + + N + S+P D
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 565
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 566 RGTK 569
R TK
Sbjct: 129 RLTK 132
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
E D++ L LAH ++ L L L L+T L++SHN+L LP A+ L L+ L S N+
Sbjct: 439 EYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKE 128
+ + D + + L + +N+L++
Sbjct: 498 LENV-DGVANLPRLQELLLCNNRLQQ 522
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
E D++ L LAH ++ L L L L+T L++SHN+L LP A+ L L+ L S N+
Sbjct: 439 EYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKE 128
+ + D + + L + +N+L++
Sbjct: 498 LENV-DGVANLPRLQELLLCNNRLQQ 522
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA--DC 159
S++ P A+ ++ CS QL +P SL L D S+N ++ L +
Sbjct: 8 SVVSCPANCLCASNILS--CSKQQLPNVPQSLPSYTALLDL--SHNNLSRLRAEWTPTRL 63
Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNR 218
+ + L + N L +S+ L L S N L+ + E + S L L L L+ N
Sbjct: 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 219 ILSIP-SSISGCCSLAEFYMGNNALSALPAEL----GKLSKLGTLDLHSNQLKE 267
I+ + ++ L + Y+ N +S P EL KL KL LDL SN+LK+
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 28 VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK----LKEDLRNLPLLTVLNVSHNKLSEL 83
+Y N + + + + LQKL L+ N I + L +D LP L +L++S NKL +L
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 84 P 84
P
Sbjct: 179 P 179
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSL- 206
++ + E + +LD+ N ++ SWT L L S N+L +TI
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCL 419
Query: 207 -SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 263
R+ LDLH N+I SIP + +L E + +N L ++P +L+ L + LH+N
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA-TALVK-------F 119
P + VL++ NK+ +P + +L L+ L+V+ N + +PD I T+L K +
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 120 DCSSNQLKELPSSLGR 135
DCS ++ L L +
Sbjct: 481 DCSCPRIDYLSRWLNK 496
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 422
I LDL N I+ +P ++ +LQ L ++ N++K PD I
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRMQLREA--PTXXXXXXXXXXXXXSQNSLQS 511
++LDL N F+S PHL+EL L + A P N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 512 IPEG-FKNLTSLTELDLSDNNI 532
IP G F L++LT+LD+S+N I
Sbjct: 95 IPLGVFTGLSNLTKLDISENKI 116
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXX 426
+L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 42 SLNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------- 89
Query: 427 XXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
+ D F + L+ LDLSYN S + F L L L L
Sbjct: 90 --------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 143 KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201
K S+ + S+P L + K LD+ N++T +SN+ + L L+ + N +N + E
Sbjct: 37 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 202 TIGSLSRLIRLDLHQNRILSIPSS 225
+ SL L LDL N + ++ SS
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSS 118
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
H N + K D+ LT L+ S NK++EL + +L L L+ N+I K+ ++
Sbjct: 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKL--LNRLNCDTNNITKL--DLNQ 210
Query: 113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
L DCSSN+L E+ + L+ F S N +T L D S +SKL
Sbjct: 211 NIQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTEL-----DVSTLSKL 256
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 27/98 (27%)
Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXX 426
+L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 16 SLNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------- 63
Query: 427 XXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
+ D F + L+ LDLSYN S
Sbjct: 64 --------------TIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 143 KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201
K S+ + S+P L + K LD+ N++T +SN+ + L L+ + N +N + E
Sbjct: 11 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 202 TIGSLSRLIRLDLHQNRILSIPSS 225
+ SL L LDL N + ++ SS
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSS 92
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 111 GSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVE 168
G A+ D S+N++ + +S L RC+NL ++N I ++ ED + + LD+
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
N L+ NL +SW + NLL +T+G S
Sbjct: 83 YNYLS----NLSSSWFKPLSSLTFLNLLGNPYKTLGETS 117
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 35/127 (27%)
Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221
++ L+ G L L N LT + SKN + MPET ++ L+L RI
Sbjct: 373 LASLEKTGETLLTLKN--------LTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI-- 422
Query: 222 IPSSISGCC----------------------SLAEFYMGNNALSALPAELGKLSKLGTLD 259
S++GC L E Y+ N L LP + L L L
Sbjct: 423 --HSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLP-DASLLPMLLVLK 479
Query: 260 LHSNQLK 266
+ NQLK
Sbjct: 480 ISRNQLK 486
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD-CSKM 162
M P + + V DCS L +P+ + + +N IT L + D +++
Sbjct: 1 MACPSQCSCSGTTV--DCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQL 56
Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
++LD++ N+LTVL + T LT+L + N L +P
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 48 QKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMK 105
Q L L N I KL+ + + L LT L++ +N+L+ LPA + +L L L ++ N +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 106 IP 107
IP
Sbjct: 93 IP 94
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 59 KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK 118
+L +D P + + +N L E PA+ +K L
Sbjct: 539 RLADDEDTGPKIQIFYXGYNNLEEFPASASLQKXVK---------------------LGL 577
Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVLSN 177
DC N+++ L + G + L+D K N I +PED A ++ L NKL + N
Sbjct: 578 LDCVHNKVRHL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 63 DLRNLPLLTVLNVSHNKLSELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSATALVKF- 119
+ +N LLT +++ NKL+ L L L + DVS+N P + +++ L F
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPTQPLNSSQLKAFG 782
Query: 120 -----DCSSNQ-LKELPSSLGRCLNLSDFKASNNCITSLPEDL 156
D N+ L++ P+ + C +L + +N I + E L
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLAD-C 159
M P + + V DCS L +P+ + + L L D N IT L + D
Sbjct: 1 MACPSQCSCSGTTV--DCSGKSLASVPTGIPTTTQVLYLYD-----NRITKLEPGVFDRL 53
Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
+++++LD++ N+LTVL + T LT+L + N L +P
Sbjct: 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 48 QKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMK 105
Q L L N I KL+ + + L LT L++ +N+L+ LPA + +L L L ++ N +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 106 IP 107
IP
Sbjct: 93 IP 94
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 224 SSISGCCSLAEF---YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
S I+G L + Y+GNN ++ + L +L+KL TL L NQ+ + AC
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAC 171
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDVEGNKLTVLSNN 178
DCS L +P+ + + +N IT L + D +++++LD++ N+LTVL
Sbjct: 23 DCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 80
Query: 179 LIASWTMLTELIASKNLLNGMPE 201
+ T LT+L + N L +P
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPR 103
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
SA PS+ +G T +D S S+ +P + + + Q L L N+I +
Sbjct: 9 SACPSQCSCSG--TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQL 64
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
DNN L +P+ F + L L L+ N + S+P F +L L ++L
Sbjct: 65 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWL 117
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 48 QKLILAHNNIEKLKEDLRN-LPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMK 105
Q L L N I KL+ + + L LT L++ +N+L+ LPA + +L L L ++ N +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 106 IP 107
IP
Sbjct: 101 IP 102
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLS 207
+ S+P + +++ L + N++T L + S T LT L + N L +P + L+
Sbjct: 31 LASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 208 RLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
+L L LH N++ SIP + SL Y+ NN
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 196 LNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSK 254
L +P I + ++++ L ++Q L P L + N L+ALP KL+K
Sbjct: 31 LASVPAGIPTTTQVLHLYINQITKLE-PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 255 LGTLDLHSNQLKE 267
L L LH NQLK
Sbjct: 90 LTHLALHINQLKS 102
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 64 LRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKIPD---EIGSATALVK 118
RNL LT L++S N++ L + G+L+ LKS+D S N I + + E L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 119 FDCSSNQLKELPS-SLGRCLN 138
F ++N L S G+C+N
Sbjct: 179 FSLAANSLYSRVSVDWGKCMN 199
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSI 103
DL+ L LA+N I K+ E L L VLN+S+N L EL ++ L + +D+ N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 104 MKIPDE 109
I D+
Sbjct: 351 AIIQDQ 356
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-- 196
+ +F N+ I SL + + + +L + N+++ LS + T L EL ++N L
Sbjct: 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99
Query: 197 -NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
NG+P LSRL LD N L S+ +L + NN L ++ LG LSKL
Sbjct: 100 LNGIPS--ACLSRLF-LD---NNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKL 152
Query: 256 GTLDLHSNQL 265
LDLH N++
Sbjct: 153 EVLDLHGNEI 162
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
N L +IP G F LT LT+LDL+DN++ + + L NP R I+
Sbjct: 67 NKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
+L + N++T L + L +L + N L +P + L++L +LDL+ N + SI
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 223 P-SSISGCCSLAEFYMGNN 240
P + SL Y+ NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 514 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 144
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLS 207
TS+P L + M LD+ NK+T + + + + L LI + +N + + SL
Sbjct: 43 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEF--YMGN 239
L LDL N + S+ SS G S ++ MGN
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAIXXX 425
+ ++IPS + A + LDLS N I + +L +CA+LQ LIL ++I DA
Sbjct: 42 SFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
DN+ L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 100 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 46 DLQKLILAHNNIEK---LKEDLRNLPLLTVLNVSHNK-LSELPAAIGELHMLKSLDVSF 100
+LQ L L+HN+IE L+NL L LN+SHN+ L A E L+ LD++F
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 514 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 564
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 68 PLLTVLNVSHNKLSELPAAIGELHM----LKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123
P L L +S N L + GE+ + L SLD+S N+ +PD + + SS
Sbjct: 361 PSLQTLVLSQNHLRSMQKT-GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419
Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
++ + + + + L + D SNN + S L ++ +L + NKL L + + +
Sbjct: 420 TGIRVVKTCIPQTLEVLD--VSNNNLDSFSLFLP---RLQELYISRNKLKTLPD--ASLF 472
Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
+L + S+N L +P+ I L+ L ++ LH N
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLS 207
TS+P L + M LD+ NK+T + + + + L LI + +N + + SL
Sbjct: 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEF--YMGN 239
L LDL N + S+ SS G S ++ MGN
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAIXXX 425
+ ++IPS + A + LDLS N I + +L +CA+LQ LIL ++I DA
Sbjct: 16 SFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
DN+ L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 74 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 24/124 (19%)
Query: 435 DNNPLRQVPSDG-FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXX 493
++N L ++ SDG F +P L L+L N + E F H+QEL L
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL----------- 85
Query: 494 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 552
+N ++ I F L L L+L DN IS +L L
Sbjct: 86 -----------GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 553 GNPL 556
NP
Sbjct: 135 SNPF 138
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%)
Query: 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
E + KL + + +LK + LP + L + +L+ L AA+GEL L +
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
+ ++ +G K +L L +++G S + +T L + + +
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 163 SKLDVEGNKLTVL 175
SKL +LT L
Sbjct: 122 SKLQEIYQELTQL 134
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%)
Query: 43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
E + KL + + +LK + LP + L + +L+ L AA+GEL L +
Sbjct: 25 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 84
Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
+ ++ +G K +L EL +++G S + +T L + +
Sbjct: 85 LTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQ 144
Query: 163 SK 164
SK
Sbjct: 145 SK 146
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 361 ELSLEGMNLSA-----IPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNK 414
E+S+E +NL I S + + +LDL+ + ELP L ++L+ L+LS NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 415 IKD 417
++
Sbjct: 313 FEN 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,511,261
Number of Sequences: 62578
Number of extensions: 523511
Number of successful extensions: 1762
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 532
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)