Query 007984
Match_columns 582
No_of_seqs 233 out of 2979
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 17:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 2E-55 4.3E-60 395.6 -2.5 552 1-580 1-564 (565)
2 PLN00113 leucine-rich repeat r 100.0 4.5E-45 9.8E-50 405.6 35.4 499 9-558 69-585 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.1E-43 2.4E-48 394.5 35.0 485 44-566 68-569 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 3.5E-41 7.6E-46 303.8 -11.7 460 5-538 64-545 (565)
5 KOG4194 Membrane glycoprotein 100.0 9.3E-37 2E-41 287.8 8.6 400 94-579 55-468 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.9E-36 8.4E-41 283.7 7.7 377 47-482 54-446 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.6E-37 5.6E-42 306.9 -3.0 476 13-530 2-486 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.6E-36 1.4E-40 296.9 0.0 461 6-530 42-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.1E-33 4.5E-38 267.5 0.8 379 9-459 7-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.1E-32 4.5E-37 260.7 -1.9 358 45-462 7-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 2.3E-21 5.1E-26 215.9 25.9 304 161-533 590-907 (1153)
12 PLN03210 Resistant to P. syrin 99.9 4.9E-21 1.1E-25 213.4 25.2 323 43-413 556-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 4.1E-24 8.9E-29 193.6 -5.3 145 12-171 49-199 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 8.7E-21 1.9E-25 195.8 17.3 259 9-312 201-459 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 3E-20 6.6E-25 191.8 18.1 41 381-421 423-463 (788)
16 KOG4237 Extracellular matrix p 99.8 2.6E-22 5.7E-27 182.0 0.6 205 116-320 69-296 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.8E-24 186.8 14.7 246 46-311 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.6E-19 5.6E-24 186.3 14.4 246 10-289 179-429 (754)
19 KOG0617 Ras suppressor protein 99.7 1.9E-19 4.1E-24 144.5 -0.5 201 375-577 28-232 (264)
20 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.8E-23 139.8 -4.1 161 42-203 30-192 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 6.8E-16 1.5E-20 150.0 10.9 225 44-268 22-293 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 5.6E-16 1.2E-20 150.6 8.4 245 49-311 2-291 (319)
23 KOG1909 Ran GTPase-activating 99.4 1.3E-13 2.7E-18 124.4 1.8 177 44-220 29-254 (382)
24 KOG0532 Leucine-rich repeat (L 99.4 3.4E-14 7.3E-19 135.9 -3.1 206 1-220 42-247 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 2.1E-13 4.5E-18 130.6 -1.9 190 13-218 79-271 (722)
26 COG4886 Leucine-rich repeat (L 99.3 6.7E-12 1.5E-16 125.4 8.3 193 73-267 98-291 (394)
27 KOG1909 Ran GTPase-activating 99.3 7.9E-13 1.7E-17 119.3 0.8 231 4-243 25-311 (382)
28 KOG3207 Beta-tubulin folding c 99.3 1.3E-12 2.9E-17 121.2 1.2 203 65-267 118-340 (505)
29 PF14580 LRR_9: Leucine-rich r 99.2 7.6E-12 1.6E-16 106.2 5.4 121 44-166 18-146 (175)
30 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.3E-16 122.1 8.5 195 95-290 97-292 (394)
31 KOG3207 Beta-tubulin folding c 99.2 1.7E-12 3.8E-17 120.5 0.3 206 357-563 121-345 (505)
32 PF14580 LRR_9: Leucine-rich r 99.2 1.3E-11 2.8E-16 104.8 5.0 106 112-219 17-125 (175)
33 KOG1259 Nischarin, modulator o 99.2 8.2E-12 1.8E-16 110.3 2.4 180 86-268 209-414 (490)
34 KOG1259 Nischarin, modulator o 99.1 2.3E-11 4.9E-16 107.5 1.5 201 44-247 181-416 (490)
35 KOG0531 Protein phosphatase 1, 99.0 4.9E-11 1.1E-15 119.2 -0.7 241 67-312 71-319 (414)
36 KOG4658 Apoptotic ATPase [Sign 99.0 7.3E-10 1.6E-14 118.2 6.6 103 45-147 545-652 (889)
37 KOG4658 Apoptotic ATPase [Sign 99.0 1.8E-09 3.8E-14 115.4 8.8 126 45-171 523-653 (889)
38 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.3E-15 115.7 0.5 195 359-560 74-271 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 7.8E-10 1.7E-14 77.1 2.7 60 497-556 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 75.1 1.8 60 403-462 1-60 (61)
41 KOG1859 Leucine-rich repeat pr 98.7 3.2E-10 6.9E-15 112.2 -6.8 125 92-220 165-292 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.6 4E-09 8.7E-14 93.5 -2.2 149 69-217 186-348 (419)
43 KOG4341 F-box protein containi 98.4 1.5E-08 3.2E-13 94.3 -3.3 131 400-530 291-436 (483)
44 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-08 4.7E-13 89.0 -3.2 173 46-218 186-374 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.4 7.1E-07 1.5E-11 78.5 6.0 204 44-265 29-284 (388)
46 PF13306 LRR_5: Leucine rich r 98.3 4.6E-07 1E-11 74.7 4.3 120 422-546 7-128 (129)
47 PLN03150 hypothetical protein; 98.3 6.9E-07 1.5E-11 93.7 6.4 105 429-555 420-526 (623)
48 KOG4579 Leucine-rich repeat (L 98.3 1.6E-07 3.6E-12 73.5 0.9 110 45-154 27-140 (177)
49 PF12799 LRR_4: Leucine Rich r 98.3 6.5E-07 1.4E-11 56.7 3.2 41 497-537 1-41 (44)
50 PLN03150 hypothetical protein; 98.3 2.1E-06 4.6E-11 90.1 8.6 91 381-471 419-510 (623)
51 KOG2982 Uncharacterized conser 98.3 4.3E-07 9.4E-12 80.9 2.7 197 70-266 47-262 (418)
52 KOG1859 Leucine-rich repeat pr 98.3 1.4E-08 3.1E-13 100.8 -7.2 123 118-243 168-292 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.2 4.2E-07 9.1E-12 79.9 1.8 188 61-267 23-256 (388)
54 PF13306 LRR_5: Leucine rich r 98.2 1.3E-06 2.8E-11 72.0 4.2 121 398-523 7-129 (129)
55 KOG2982 Uncharacterized conser 98.2 8.6E-07 1.9E-11 79.1 2.9 215 47-261 47-287 (418)
56 KOG4579 Leucine-rich repeat (L 98.2 2.5E-07 5.4E-12 72.5 -0.5 85 46-130 54-139 (177)
57 PRK15386 type III secretion pr 98.1 2.4E-05 5.2E-10 75.3 11.0 153 379-554 51-210 (426)
58 KOG1644 U2-associated snRNP A' 98.1 7E-06 1.5E-10 69.3 6.1 83 137-220 42-126 (233)
59 KOG4341 F-box protein containi 98.1 2.9E-07 6.2E-12 86.0 -2.7 216 351-566 210-449 (483)
60 KOG3665 ZYG-1-like serine/thre 98.1 2.7E-06 5.9E-11 88.9 4.0 147 403-552 122-283 (699)
61 KOG3665 ZYG-1-like serine/thre 98.0 7.8E-06 1.7E-10 85.6 6.2 127 46-173 123-263 (699)
62 PRK15386 type III secretion pr 98.0 5E-05 1.1E-09 73.2 10.8 73 64-147 48-122 (426)
63 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.3E-10 51.1 4.3 38 46-83 2-39 (44)
64 KOG1644 U2-associated snRNP A' 97.9 2.9E-05 6.4E-10 65.6 6.1 80 47-127 21-101 (233)
65 KOG2739 Leucine-rich acidic nu 97.3 7.9E-05 1.7E-09 65.9 1.0 85 66-151 41-130 (260)
66 KOG2123 Uncharacterized conser 97.2 1.7E-05 3.6E-10 70.4 -3.9 82 379-463 18-100 (388)
67 KOG2123 Uncharacterized conser 97.2 2.1E-05 4.5E-10 69.8 -3.6 79 45-125 19-99 (388)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00038 8.3E-09 61.7 3.0 59 403-464 43-104 (260)
69 KOG1947 Leucine rich repeat pr 97.0 0.00028 6E-09 73.0 1.6 16 203-218 358-373 (482)
70 KOG1947 Leucine rich repeat pr 96.8 0.00056 1.2E-08 70.7 2.4 220 4-243 183-440 (482)
71 PF13504 LRR_7: Leucine rich r 95.8 0.0053 1.2E-07 29.6 1.1 13 522-534 3-15 (17)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0045 9.7E-08 32.4 0.9 17 522-538 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 95.1 0.015 3.2E-07 28.1 1.4 17 497-513 1-17 (17)
74 smart00370 LRR Leucine-rich re 95.1 0.018 4E-07 31.5 2.0 21 520-540 2-22 (26)
75 smart00369 LRR_TYP Leucine-ric 95.1 0.018 4E-07 31.5 2.0 21 520-540 2-22 (26)
76 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.3E-07 30.3 0.9 16 47-62 2-17 (22)
77 KOG4308 LRR-containing protein 94.6 0.00078 1.7E-08 67.7 -7.7 174 47-220 89-303 (478)
78 KOG0473 Leucine-rich repeat pr 94.5 0.0011 2.3E-08 57.7 -5.8 87 63-149 37-123 (326)
79 KOG4308 LRR-containing protein 94.5 0.00088 1.9E-08 67.4 -7.7 180 11-198 89-304 (478)
80 smart00370 LRR Leucine-rich re 94.1 0.041 8.9E-07 30.1 1.9 22 544-565 2-23 (26)
81 smart00369 LRR_TYP Leucine-ric 94.1 0.041 8.9E-07 30.1 1.9 22 544-565 2-23 (26)
82 KOG0473 Leucine-rich repeat pr 92.9 0.0029 6.4E-08 55.0 -5.9 84 44-127 41-124 (326)
83 KOG3864 Uncharacterized conser 91.5 0.032 6.9E-07 47.8 -1.4 60 400-459 122-184 (221)
84 PF13516 LRR_6: Leucine Rich r 89.6 0.15 3.3E-06 27.1 0.7 20 543-562 1-20 (24)
85 smart00364 LRR_BAC Leucine-ric 89.0 0.3 6.5E-06 26.4 1.5 19 520-538 2-20 (26)
86 KOG3864 Uncharacterized conser 87.9 0.13 2.9E-06 44.2 -0.4 81 357-437 101-186 (221)
87 KOG3763 mRNA export factor TAP 85.3 0.78 1.7E-05 45.9 3.2 80 495-580 216-301 (585)
88 smart00365 LRR_SD22 Leucine-ri 82.0 1.4 3E-05 24.0 2.0 16 520-535 2-17 (26)
89 smart00368 LRR_RI Leucine rich 79.0 1.5 3.3E-05 24.3 1.6 19 544-562 2-20 (28)
90 smart00367 LRR_CC Leucine-rich 76.6 1.9 4.2E-05 23.3 1.5 12 544-555 2-13 (26)
91 KOG3763 mRNA export factor TAP 50.6 8.6 0.00019 38.9 1.5 61 89-150 216-283 (585)
92 PRK09718 hypothetical protein; 31.8 97 0.0021 31.3 5.3 14 544-557 228-241 (512)
93 KOG4242 Predicted myosin-I-bin 29.6 3.2E+02 0.007 27.7 8.3 38 229-266 439-481 (553)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-55 Score=395.61 Aligned_cols=552 Identities=47% Similarity=0.718 Sum_probs=486.0
Q ss_pred ChHHHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCC
Q 007984 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (582)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~ 80 (582)
.++++|+||+-+.+++|++.+..+|..+++..-...+++.||+-..+.++.++++.++.+.+.+.++..+.+|++.+++.
T Consensus 1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l 80 (565)
T KOG0472|consen 1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL 80 (565)
T ss_pred CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence 36889999999999999999999999999887777889999999999999999999999989999999999999999999
Q ss_pred cccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCC
Q 007984 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (582)
Q Consensus 81 ~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~ 160 (582)
.++|.+++.+..++.++.++|++..+|..+..+.+|.+++++++.+.+++..++.+..++.++...|++..+|.++..+.
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS 160 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 240 (582)
++..+++.+|.+...++..+. ++.|++++...|.++.+|..++.+.+|..|++..|.+..+| .|.+|..|++++++.|
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N 238 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN 238 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence 999999999999999888666 99999999999999999999999999999999999999998 8999999999999999
Q ss_pred cCcccchhhh-ccCCCcEEEcccCcccccchhhhccc-ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcccccccc
Q 007984 241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (582)
Q Consensus 241 ~i~~l~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (582)
.|..+|++.. .++.+..||+..|+++++|+..+..+ ++.+|+++|.++.+|..++++ +|+.|.+.||++..+++...
T Consensus 239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence 9999988765 89999999999999999999988877 999999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCccccccchhhH------HhhhhcccccccEEEecCCCCccCChhhhccCC---ccEEEcCC
Q 007984 319 NGPTPALLKYLRSRLPENEDSEASTTKEDL------ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR 389 (582)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~---L~~L~l~~ 389 (582)
..++.+.+++....+............... .........+.+.++.++-+++.+|...|.... .+..+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 999999999998855443322111111111 111222234667889999999999999887554 88999999
Q ss_pred CcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984 390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (582)
Q Consensus 390 ~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 469 (582)
|++..+|..+..+..+.+.-+..++..++.+..++.+++|..|++++|.+.+++.+ +..+-.|+.+|++.|.|-..
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l--- 473 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML--- 473 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc---
Confidence 99999999887777766555555666677778889999999999999999999877 66777899999998855322
Q ss_pred CCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccccccccce
Q 007984 470 PFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQA 548 (582)
Q Consensus 470 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~ 548 (582)
|..+.....++.+-.++|++..++.. +.+|.+|..||+.+|.+..+|+.+.. +.+|++
T Consensus 474 --------------------P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgn-mtnL~h 532 (565)
T KOG0472|consen 474 --------------------PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGN-MTNLRH 532 (565)
T ss_pred --------------------hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcc-ccceeE
Confidence 33334445567777788899988654 89999999999999999999997665 499999
Q ss_pred eeccCCCCCcchHHHhccchHHHHHHHHhcCC
Q 007984 549 LRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 580 (582)
Q Consensus 549 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (582)
|+++||++.-.+..++-..+.+++.|+++.+|
T Consensus 533 LeL~gNpfr~Pr~~iLmkgT~aiL~ylrdrIp 564 (565)
T KOG0472|consen 533 LELDGNPFRQPRHQILMKGTAAILSYLRDRIP 564 (565)
T ss_pred EEecCCccCCCHHHHhccChHHHHHHhcccCC
Confidence 99999999988889999999999999999998
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.5e-45 Score=405.60 Aligned_cols=499 Identities=29% Similarity=0.368 Sum_probs=413.1
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhHh-hcCCCCCcEEEcCCCCCcc-cch
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLSE-LPA 85 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~~-~~~~~~L~~L~L~~~~~~~-l~~ 85 (582)
..+..|+++++.+.......+. .+++|+.|++++|.+. .+|.. +..+++|++|++++|.+.. +|.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~------------~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIF------------RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHh------------CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence 4678899998887743333322 3788999999999887 67765 4589999999999998873 433
Q ss_pred hhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCCCC
Q 007984 86 AIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM 162 (582)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L 162 (582)
..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|
T Consensus 137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 46889999999999887 67888999999999999999876 67888899999999999999887 678889999999
Q ss_pred cEEEccCCcccccchhhhcccccCcEEEccCCccC-ccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCC
Q 007984 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~ 240 (582)
++|++++|++....+..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 99999999988666666899999999999999885 57788999999999999999887 56788889999999999999
Q ss_pred cCc-ccchhhhccCCCcEEEcccCcccccchhh--hcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCcccccc
Q 007984 241 ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS 316 (582)
Q Consensus 241 ~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 316 (582)
.+. .+|..+..+++|+.|++++|.+....+.. ...+|+.+++++|.+.+ +|..+..+++|+.+++++|.+......
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 988 67888899999999999999887543322 23459999999998875 777788999999999999987532111
Q ss_pred ccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-
Q 007984 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE- 394 (582)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~- 394 (582)
. ......++.+++.++.+. .+|..+..+++|+.|++++|.++.
T Consensus 375 ~-----------------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 375 G-----------------------------------LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred h-----------------------------------HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 0 111245788888888876 677788889999999999998875
Q ss_pred CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCC
Q 007984 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474 (582)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 474 (582)
+|..+..+++|+.|++++|.+++.....+..+++|+.|++++|.+....+..+ ..++|+.|++++|.+++..+..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 77788899999999999999988777777889999999999999876554433 46889999999999988888889999
Q ss_pred ccchhhhh-ccccc-cCchhhhccCCCCEEecCCCcCC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceee
Q 007984 475 PHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALR 550 (582)
Q Consensus 475 ~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~ 550 (582)
++|++|++ .+.+. .+|..+..+++|+.|++++|.++ .+|..+.++++|++|++++|+++ .+|..+.. +++|+.++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ 577 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVN 577 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc-CcccCEEe
Confidence 99999999 55554 67788899999999999999998 56788999999999999999988 56665554 48999999
Q ss_pred ccCCCCCc
Q 007984 551 LDGNPLRS 558 (582)
Q Consensus 551 l~~~~~~~ 558 (582)
+++|++..
T Consensus 578 ls~N~l~~ 585 (968)
T PLN00113 578 ISHNHLHG 585 (968)
T ss_pred ccCCccee
Confidence 99998753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-43 Score=394.52 Aligned_cols=485 Identities=29% Similarity=0.377 Sum_probs=412.6
Q ss_pred ccCccEEEcCCCCcc-chhHhhcCCCCCcEEEcCCCCCc-ccchhh-hCCCCCcEEecCCCcCc-cCChhhhccCCccEE
Q 007984 44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF 119 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L 119 (582)
..+++.|+++++.++ .++..|..+++|++|++++|.+. .+|..+ ..+.+|++|++++|.+. .+|. ..+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999887 45678999999999999999987 677755 58999999999999887 4453 468999999
Q ss_pred EccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC
Q 007984 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (582)
Q Consensus 120 ~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (582)
++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....+..++.+++|++|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 99999987 67888999999999999999886 77888999999999999999988766667999999999999999886
Q ss_pred -ccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccccchh-h-
Q 007984 198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-A- 272 (582)
Q Consensus 198 -~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~-~- 272 (582)
.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+. .
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 67888999999999999999987 67888999999999999999987 6788999999999999999998754333 2
Q ss_pred hcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984 273 CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (582)
Q Consensus 273 ~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (582)
...+|+.+++++|.+.+ ++..+..+++|+.|++++|.+..... .
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-----------------------------------~ 350 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-----------------------------------K 350 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-----------------------------------h
Confidence 23459999999998876 66678899999999999998752210 0
Q ss_pred hhcccccccEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCC
Q 007984 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (582)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (582)
.......++.+++.+|.+. .+|..+...++|+.+++++|.+.. +|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 1112356889999999886 678888888999999999999875 77788999999999999999988777778999999
Q ss_pred CEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccc-cCchhhhccCCCCEEecCCC
Q 007984 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQN 507 (582)
Q Consensus 430 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~ 507 (582)
+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++ .+.+. ..+..+..+++|+.|++++|
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 999999999998777767889999999999999887665544 4689999999 55554 56778889999999999999
Q ss_pred cCC-ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhcc
Q 007984 508 SLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 566 (582)
Q Consensus 508 ~l~-~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 566 (582)
.+. .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++...-+..+..
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 998 67888999999999999999999766655666699999999999997554444443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-41 Score=303.84 Aligned_cols=460 Identities=29% Similarity=0.418 Sum_probs=372.5
Q ss_pred HHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc
Q 007984 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (582)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~ 84 (582)
++....+-+++.+.+.+...|..+.. ...++.++++++++.++|+.+.....++.++.+++.+..++
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~ 130 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP 130 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence 34445667788888888888887755 56788899999999999999999999999999999999999
Q ss_pred hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcE
Q 007984 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164 (582)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~ 164 (582)
+.++.+..|+.++..+|.+.++|.++.++.+|..+++.++.+..+|...-+++.|++|+...|.++.+|+.++.+.+|+.
T Consensus 131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL 210 (565)
T ss_pred chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence 99999999999999999999999999999999999999999998888777799999999999999999999999999999
Q ss_pred EEccCCcccccchhhhcccccCcEEEccCCccCccchhhc-CCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG-SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 243 (582)
|++..|++..++. |.+|..|.+++++.|.++.+|+... .++++..||+.+|+++.+|..+..+++|+.|++++|.|+
T Consensus 211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence 9999999998884 9999999999999999999997765 789999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCcEEEcccCcccccchhhhccc----ccEEEc--cCCCCC--------C------CCccccCCCCCCeE
Q 007984 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL--SNNSLS--------G------LPPEIGKMTTLRKL 303 (582)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----L~~l~l--~~~~l~--------~------~~~~l~~~~~L~~L 303 (582)
.+|..++++ .|+.|.+.+|.+..+........ ++++.= ....++ . ..+......+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 999999999 99999999998876654433221 333321 000110 0 01112234456667
Q ss_pred EccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCc-
Q 007984 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI- 382 (582)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L- 382 (582)
++++-+++.++...|.... ..-+..++++++++.++|..+.....+
T Consensus 368 ~~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred cccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHH
Confidence 7777766666544443211 123568899999999999888765554
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+.+.++.+.+.-+|..+..+++|+-|++++|-+.+++.+ ++.+..|+.++++.|++..++.. +.....|+.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence 456677777777888889999999999999999999877 57888899999999998887753 4445556666666666
Q ss_pred CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~ 538 (582)
+..+.+ .++.++..|.+||+.+|++..+|..+++|++|++|.+.||.++ .|..
T Consensus 493 i~~vd~----------------------~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 493 IGSVDP----------------------SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred ccccCh----------------------HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence 655432 3477889999999999999999999999999999999999888 5553
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-37 Score=287.84 Aligned_cols=400 Identities=25% Similarity=0.341 Sum_probs=258.0
Q ss_pred cEEecCCCcCccCCh-hhhcc--CCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984 94 KSLDVSFNSIMKIPD-EIGSA--TALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (582)
Q Consensus 94 ~~L~l~~~~~~~l~~-~~~~~--~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (582)
..|+.++..+..+.. .+.+. ..-+.|++++|.+..+ +..|.++++|+++++..|.+..||..-....+|+.|++.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 345555555544311 12222 1234577888777755 3456778888888888888888887777777888888888
Q ss_pred CcccccchhhhcccccCcEEEccCCccCccch-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccc-
Q 007984 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP- 246 (582)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~- 246 (582)
|.|..+....++.++.|++|+++.|.+.+++. ++..-.++++|++++|.++.+ ...|..+.+|.+|.|+.|.++.+|
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 88888888888888888888888888887763 555667888999998888865 456778888888888888888775
Q ss_pred hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHH
Q 007984 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326 (582)
Q Consensus 247 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 326 (582)
..|.++++|+.|++..|.+..+... .|.++++|+.+.+..|.+..+..+.|
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~l---------------------tFqgL~Sl~nlklqrN~I~kL~DG~F-------- 265 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGL---------------------TFQGLPSLQNLKLQRNDISKLDDGAF-------- 265 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhh---------------------hhcCchhhhhhhhhhcCcccccCcce--------
Confidence 4566788888888888877654222 24455555555555555443322222
Q ss_pred HHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCC
Q 007984 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASL 405 (582)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L 405 (582)
+.+.+++.|+++.|++..+.. ++.++++|
T Consensus 266 --------------------------------------------------y~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 266 --------------------------------------------------YGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred --------------------------------------------------eeecccceeecccchhhhhhcccccccchh
Confidence 223444555555555544433 34455555
Q ss_pred CEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-cc
Q 007984 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RM 484 (582)
Q Consensus 406 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~ 484 (582)
++|+++.|.|..+.....+.+++|+.|+++.|+++.+.+.+|..+++|+.|.|+.|.++.+...+|.++.+|++|++ .+
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 55555555555544444455555555555555555555555555555555555555555555555555555555555 22
Q ss_pred ccc----cCchhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcc
Q 007984 485 QLR----EAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559 (582)
Q Consensus 485 ~~~----~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~ 559 (582)
.+. +....+..+++|+.|++.+|++.++| .+|.+++.|+.|+|.+|.|.++.+++|.. -.|++|.++.-++.
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~-m~Lk~Lv~nSssfl-- 452 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP-MELKELVMNSSSFL-- 452 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc-chhhhhhhcccceE--
Confidence 221 22234556788888888888888887 45888888888888888888888888877 48888887665544
Q ss_pred hHHHhccchHHHHHHHHhcC
Q 007984 560 RRTILDRGTKAVLKYLKDKI 579 (582)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~ 579 (582)
++...+=...|+.++.
T Consensus 453 ----CDCql~Wl~qWl~~~~ 468 (873)
T KOG4194|consen 453 ----CDCQLKWLAQWLYRRK 468 (873)
T ss_pred ----EeccHHHHHHHHHhcc
Confidence 3555666666666554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-36 Score=283.69 Aligned_cols=377 Identities=25% Similarity=0.348 Sum_probs=243.3
Q ss_pred ccEEEcCCCCccchh-HhhcC--CCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984 47 LQKLILAHNNIEKLK-EDLRN--LPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (582)
Q Consensus 47 l~~L~l~~~~i~~~~-~~~~~--~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (582)
-+-|+.++..++.+. ..+.. .+.-+.|++++|.+.++ +..|.++++|+.+.+..|.+..+|....-..+|++|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 345666666555442 12221 12344567777666654 345666677777777766666666655555567777777
Q ss_pred CCcCCcCC-cccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984 123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 123 ~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
.|.++.+. ..+..++.|++||++.|.+..++.. |..-.++++|++.+|+|+.++.+.|.++.+|..|.++.|.++.+|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 66666553 3555666677777777766666543 555566777777777777777777777777777777777777666
Q ss_pred h-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccc-hhhhccCCCcEEEcccCcccccchhhh--cc
Q 007984 201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEAC--QL 275 (582)
Q Consensus 201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~ 275 (582)
. .|..++.|+.|++..|.+..+ ...|.++++|+.|.+..|.|..+. ..|..+.++++|++..|++..+..... ..
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 3 455577777777777766644 345667777777777777776553 345566777777777777665544322 22
Q ss_pred cccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhc
Q 007984 276 RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354 (582)
Q Consensus 276 ~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (582)
+|+.|+++.|.+..+ +..+..+++|++|+++.|.++.+...
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-------------------------------------- 335 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-------------------------------------- 335 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCChh--------------------------------------
Confidence 377777777776664 34467777888888887776544322
Q ss_pred ccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCC---CChHHhhCCCCCC
Q 007984 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD---WPDAILTSLSSLS 430 (582)
Q Consensus 355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~---~~~~~l~~l~~L~ 430 (582)
.+..+..|++|++++|.+..+.+ .|..+.+|++||++.|.+.. .....|.++++|+
T Consensus 336 --------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 336 --------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred --------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 22224566777777777766654 46667777777777776543 2334466777777
Q ss_pred EeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (582)
Q Consensus 431 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 482 (582)
.|++.+|++..|+..+|.++++|++|||.+|-+-++.+.+|..+ .|++|.+
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 77777777777777777777777777777777777777777777 7777776
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-37 Score=306.88 Aligned_cols=476 Identities=27% Similarity=0.339 Sum_probs=317.4
Q ss_pred ceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCC
Q 007984 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH 91 (582)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 91 (582)
++|.+..+++-||..++.+ ..+..|+++.|.+-..| +.+.+.-+|+.|+|+++.+...|..+..++
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~ 68 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS 68 (1081)
T ss_pred CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence 5788888999999988763 45888999988766544 345556669999999999999999999999
Q ss_pred CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCC-
Q 007984 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN- 170 (582)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~- 170 (582)
+|+.|++++|.|..+|.++.++.+|+++++.+|....+|..+..+++|+.|+++.|.+..+|..+..+..++++..++|
T Consensus 69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccchhhhcccccCcEEEccCCccC-ccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhh
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l 249 (582)
.+..++ ... ++.+++..+.+. .++..+..+.+ .|++++|.+. ...+..+.+|+.|....+.+..+..
T Consensus 149 ~~~~lg-----~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~-- 216 (1081)
T KOG0618|consen 149 KIQRLG-----QTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI-- 216 (1081)
T ss_pred hhhhhc-----ccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe--
Confidence 222222 222 777777777663 34434433334 5999999887 3457788899999998888885522
Q ss_pred hccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHH
Q 007984 250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (582)
Q Consensus 250 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 329 (582)
.-++++.|+.++|.+........+..+++++++++.+..+|.....+.+++.++...|.+..++...+.......+...
T Consensus 217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 3479999999999999777777777799999999999999988899999999999999886554433332211111111
Q ss_pred HhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhcc--CCccEEEcCCCcCCcCCcc-ccCCCCCC
Q 007984 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ 406 (582)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~--~~L~~L~l~~~~l~~l~~~-l~~~~~L~ 406 (582)
...+... ........+++++++..+.+..+|..++.. ..++.++.+.+.+...|.. =...+.|+
T Consensus 296 ~nel~yi-------------p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 296 YNELEYI-------------PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhhhC-------------CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 1000000 000111123444444444444444433321 1134444444444443321 12234455
Q ss_pred EEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccc
Q 007984 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQ 485 (582)
Q Consensus 407 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~ 485 (582)
.|++.+|.+++-....+.+.++|+.|++++|++..+++..+.+++.|++|++|||+++.+. .....++.|++|.. .++
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence 5555666665554455555666666666666666665555556666666666666555543 34455555555555 333
Q ss_pred cccCchhhhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCC
Q 007984 486 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDN 530 (582)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n 530 (582)
+...| .+..+++|+.+|++.|+++. +|+.... ++|++||++||
T Consensus 442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 33444 44555555555555555542 2222211 45555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-36 Score=296.94 Aligned_cols=461 Identities=27% Similarity=0.347 Sum_probs=316.9
Q ss_pred HHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch
Q 007984 6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (582)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~ 85 (582)
+++-++++||++++.+..+|..+-. ..+|+.|+++.+-|.++|....++.+|+++.|.++.+..+|.
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~ 108 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPA 108 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCch
Confidence 3344455555555555555554432 344555555555555555555555555555555555555555
Q ss_pred hhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC-cCCcCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCc
Q 007984 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS 163 (582)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~ 163 (582)
.+..+.+|++|+++.|.+..+|..+..++.++.+..++| ++..++.. .++.+++..+.+. .++.+...+.+
T Consensus 109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~ik~~~l~~n~l~~~~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----SIKKLDLRLNVLGGSFLIDIYNLTH-- 181 (1081)
T ss_pred hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----cchhhhhhhhhcccchhcchhhhhe--
Confidence 555555555555555555555555555555555555555 11122211 1455555555444 34444454555
Q ss_pred EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 243 (582)
.|++.+|++...+ +..+.+|+.+....+.+..+.. ..++|+.|+.+.|.++... ......+|++++++.+.+.
T Consensus 182 ~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeecccchhhhhh---hhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceeec-cccccccceeeecchhhhh
Confidence 6888888877222 6778888888888887766532 3478889999998877432 2233578999999999999
Q ss_pred ccchhhhccCCCcEEEcccCcccccchhhhccc-ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (582)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (582)
.+|.|+..+.+|+.++..+|.+..++....... ++.+.+..|.+..+|+..++...|++|++..|.+...+...+....
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~ 334 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN 334 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhh
Confidence 999999999999999999999988877665544 8999999999999999899999999999999998776543322110
Q ss_pred HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhh-ccCCccEEEcCCCcCCc-CCcccc
Q 007984 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LPPELS 400 (582)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~-l~~~l~ 400 (582)
..+..+..+.+.+...|..-. ..+.|+.|.+.+|.+++ +-..+.
T Consensus 335 ----------------------------------~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 335 ----------------------------------ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred ----------------------------------HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 111222233333444442222 25679999999999987 334678
Q ss_pred CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhh
Q 007984 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480 (582)
Q Consensus 401 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 480 (582)
+.+.|++|++++|++..++...+.+++.|++|+++||.++.++. ....+..|+.|...+|.+.... .+..++.|+.+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~l 457 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVL 457 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeech--hhhhcCcceEE
Confidence 88999999999999999999999999999999999999999984 4899999999999999998775 58899999999
Q ss_pred hh-ccccccCchhhh-ccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCC
Q 007984 481 YL-RMQLREAPTDIL-RLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDN 530 (582)
Q Consensus 481 ~l-~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n 530 (582)
++ ++++..+.-... ..+.|+.||++||.-..+. ..|..+..+...++.-+
T Consensus 458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99 776664422221 2289999999999644332 34666677777777666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-33 Score=267.49 Aligned_cols=379 Identities=28% Similarity=0.415 Sum_probs=318.4
Q ss_pred hhcCceecCCCCCC--CcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchh
Q 007984 9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~ 86 (582)
+-.+-+|++++.+. .+|.++.+ +..++.|.|....+.++|+.++.+++|++|.+.+|++.++-.-
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE 73 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE 73 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence 34567899999876 89998876 7899999999999999999999999999999999999888778
Q ss_pred hhCCCCCcEEecCCCcCc--cCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccc-cccCCCCc
Q 007984 87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS 163 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~ 163 (582)
++.++.|+.+.+++|++. .+|..+..+..|..|++|.|++...|..+.+-+++-.|++++|++..||.. |.+++.|-
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 889999999999999887 689999999999999999999999999999999999999999999999876 67888999
Q ss_pred EEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEcCCC
Q 007984 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~ 240 (582)
.|++++|++..+++. +..+.+|++|.+++|.+.... ..+..+.+|+.|.+++++-+ .+|..+..+.+|..++++.|
T Consensus 154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 999999999999888 889999999999999886432 34456778889999998755 78999999999999999999
Q ss_pred cCcccchhhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccC
Q 007984 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (582)
Q Consensus 241 ~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 319 (582)
.+..+|..+..+++|+.|++++|+++++...... .++++|++++|.++.+|.++..+++|+.|.+.+|++.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------- 304 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------- 304 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence 9999999999999999999999999987665433 3489999999999999999999999999999888762
Q ss_pred CCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccc
Q 007984 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399 (582)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l 399 (582)
+..+|+.++.+.+|+.+..++|.+.-+|+.+
T Consensus 305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 2467778888888888888888888888888
Q ss_pred cCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCC
Q 007984 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (582)
Q Consensus 400 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 459 (582)
..|+.|+.|.++.|++..++.. +--++.|+.|++..|+-..+++..-..-++|+.-+++
T Consensus 336 cRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 8888888888888887777643 5678888888888876554444322222345444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-32 Score=260.71 Aligned_cols=358 Identities=25% Similarity=0.375 Sum_probs=298.9
Q ss_pred cCccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (582)
Q Consensus 45 ~~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (582)
+=+|-+++++|.++ .+|.....+++++.|.|...++..+|+-++.+.+|++|.+.+|.+.++...+..++.|+.+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 44688899999887 6788899999999999999999999999999999999999999999888888899999999999
Q ss_pred CCcCC--cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984 123 SNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 123 ~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
.|++. .+|..+.++..|..|+++.|++.+.|..+..-+++-.|++++|+|..|+...|.++..|-.|+++.|.++.+|
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 99887 7888999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc--ccchhhhccCCCcEEEcccCcccccchhhhcccc
Q 007984 201 ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277 (582)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~--~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 277 (582)
..+..+..|++|++++|.+... ...+..+++|++|.+++.+-+ .+|..+..+.+|+.++++.|.
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------------- 233 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------------- 233 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------------
Confidence 8888888999999998876632 234555667777777776544 666666666666666666554
Q ss_pred cEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccc
Q 007984 278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357 (582)
Q Consensus 278 ~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (582)
+..+|..+..+++|+.|++++|.++.+.-.. ..+ .
T Consensus 234 ---------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------~~W------------------------------~ 268 (1255)
T KOG0444|consen 234 ---------LPIVPECLYKLRNLRRLNLSGNKITELNMTE------GEW------------------------------E 268 (1255)
T ss_pred ---------CCcchHHHhhhhhhheeccCcCceeeeeccH------HHH------------------------------h
Confidence 4456667777888888888888876543110 000 2
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcC--CcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI--QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l--~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (582)
+++.++++.++++.+|..+..++.|+.|.+.+|++ ..+|..++++.+|+++..++|.+.-++. .+++|++|+.|.++
T Consensus 269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE-glcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE-GLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch-hhhhhHHHHHhccc
Confidence 45778888888899999999999999999999975 4699999999999999999998876654 58999999999999
Q ss_pred CCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 436 NNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+|++..++. ++.-++.|+.||+..|.
T Consensus 348 ~NrLiTLPe-aIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLITLPE-AIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccceeechh-hhhhcCCcceeeccCCc
Confidence 999988875 48889999999999883
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.3e-21 Score=215.92 Aligned_cols=304 Identities=24% Similarity=0.311 Sum_probs=166.8
Q ss_pred CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCc-CccCCcCCcCCCCCcEEEcCC
Q 007984 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGN 239 (582)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~ 239 (582)
+|+.|.+.++.+..++.. + ...+|++|++.++.+..++..+..+++|+.|+++++. +..+| .+..+++|+.|++++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 355555555544444432 2 2345555555555555444444445555555555443 22333 244455555555555
Q ss_pred Cc-CcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcccccccc
Q 007984 240 NA-LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (582)
Q Consensus 240 ~~-i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 318 (582)
|. +..+|..+..+++|+.|++++|. .+..+|... .+++|++|++++|.....
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~---------------------~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~----- 719 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCE---------------------NLEILPTGI-NLKSLYRLNLSGCSRLKS----- 719 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCC---------------------CcCccCCcC-CCCCCCEEeCCCCCCccc-----
Confidence 43 23445555555555555555432 222333322 455566666655532000
Q ss_pred CCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC--
Q 007984 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-- 396 (582)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-- 396 (582)
......+++.+++.++.+..+|..+ .+++|++|.+.++....+.
T Consensus 720 ---------------------------------~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 720 ---------------------------------FPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred ---------------------------------cccccCCcCeeecCCCccccccccc-cccccccccccccchhhcccc
Confidence 0001123455566666656666544 4677888888765432221
Q ss_pred -----c-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC-CccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984 397 -----P-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (582)
Q Consensus 397 -----~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 469 (582)
. ....+++|+.|++++|......+..++++++|+.|++++|. +..++.. . .+++|+.|++++|......+
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p- 842 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP- 842 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc-
Confidence 1 22345788999998885443333457889999999998874 5555543 2 67889999998874322211
Q ss_pred CCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCC-cCCccchhhcCCCCCCEEeCCCC-cCC
Q 007984 470 PFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQN-SLQSIPEGFKNLTSLTELDLSDN-NIS 533 (582)
Q Consensus 470 ~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n-~l~ 533 (582)
...++|+.|++ .+.+..+|..+..+++|+.|++++| +++.+|..+..+++|+.+++++| .++
T Consensus 843 --~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 --DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred --ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 12345666666 5556666666667777777777765 56666655666677777777777 344
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.9e-21 Score=213.41 Aligned_cols=323 Identities=24% Similarity=0.274 Sum_probs=198.0
Q ss_pred cccCccEEEcCCCCc-------cchhHhhcCCC-CCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccC
Q 007984 43 EAVDLQKLILAHNNI-------EKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT 114 (582)
Q Consensus 43 ~~~~l~~L~l~~~~i-------~~~~~~~~~~~-~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~ 114 (582)
.+.+|+.|.+..+.. ..+|+.|..++ .|+.|.+.++.+..+|..+ ...+|+.|+++++.+..++..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 366677776654321 13444454443 4777777777777666665 35677777777777776666666677
Q ss_pred CccEEEccCCc-CCcCCcccccCCCCCeEEcCCCc-CCCCccccccCCCCcEEEccCC-cccccchhhhcccccCcEEEc
Q 007984 115 ALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIA 191 (582)
Q Consensus 115 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~-~~~i~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l 191 (582)
+|+.|+++++. +..+| .+..+++|++|++++|. +..+|..+..+++|+.|++++| .++.++.. .++++|+.|++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeC
Confidence 77777776654 34554 35566777777777663 4466666777777777777665 34455443 15667777777
Q ss_pred cCCcc-CccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccc--------hhhhccCCCcEEEccc
Q 007984 192 SKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--------AELGKLSKLGTLDLHS 262 (582)
Q Consensus 192 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~--------~~l~~~~~L~~L~l~~ 262 (582)
++|.. ..+|.. ..+|+.|+++++.+..+|..+ .+++|+.|.+.++....+. ......++|+.|++++
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 77643 333321 346777777777766666544 4566666666554322111 1122345677777776
Q ss_pred Cc-ccccchhhh-cccccEEEccCC-CCCCCCccccCCCCCCeEEccCCCCc-cccccccCCCcHHHHHHHHhcCCCCCc
Q 007984 263 NQ-LKEYCVEAC-QLRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENED 338 (582)
Q Consensus 263 ~~-~~~~~~~~~-~~~L~~l~l~~~-~l~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (582)
|. +..++.... ..+|+.|++++| .+..+|... .+++|++|++++|..- .+
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~------------------------- 841 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF------------------------- 841 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-------------------------
Confidence 64 333443322 223777777776 344455544 5778888888876421 10
Q ss_pred cccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCC-cCCcCCccccCCCCCCEEEcccC
Q 007984 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN 413 (582)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~~ 413 (582)
.....+++.+++.++.+..+|.++..+++|+.|++++| .+..+|.....+++|+.+++++|
T Consensus 842 --------------p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 842 --------------PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred --------------cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 01123567777777777788888878888888888875 46667766777788888888777
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=4.1e-24 Score=193.61 Aligned_cols=145 Identities=23% Similarity=0.339 Sum_probs=123.1
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~ 89 (582)
...++++..+++||.++ .+...+|+|..|.|+.+|+ +|+.+++||.|||++|.|+.| |++|..
T Consensus 49 ~~VdCr~~GL~eVP~~L---------------P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G 113 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANL---------------PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG 113 (498)
T ss_pred ceEEccCCCcccCcccC---------------CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence 56889999999999988 6788999999999999985 899999999999999999977 779999
Q ss_pred CCCCcEEecCC-CcCccCChh-hhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEE
Q 007984 90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~-~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L 165 (582)
++.|..|-+-+ |+|+.+|.. |+++..|+.|.+.-|.+..++ ..+..++++..|.+.+|.+..++. .|..+..++.+
T Consensus 114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL 193 (498)
T ss_pred hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence 99988877765 899999765 888999999999888887554 477889999999999998888876 57777777777
Q ss_pred EccCCc
Q 007984 166 DVEGNK 171 (582)
Q Consensus 166 ~l~~~~ 171 (582)
.+..+.
T Consensus 194 hlA~np 199 (498)
T KOG4237|consen 194 HLAQNP 199 (498)
T ss_pred hhhcCc
Confidence 765554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=8.7e-21 Score=195.85 Aligned_cols=259 Identities=30% Similarity=0.377 Sum_probs=217.7
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 88 (582)
.+-..|+++++.++.+|..+ .++++.|++..|.++.+|.. .++|++|++++|.++.+|..
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l---------------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-- 260 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL---------------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-- 260 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch---------------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--
Confidence 34567999999999999877 34799999999999988753 58999999999999988753
Q ss_pred CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~ 168 (582)
.++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|.. .++|+.|++++|.+..+|.. ..+|+.|+++
T Consensus 261 -p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls 330 (788)
T PRK15387 261 -PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAY 330 (788)
T ss_pred -ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccc
Confidence 46899999999999888763 35788999999999988763 47899999999999988753 2468889999
Q ss_pred CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (582)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~ 248 (582)
+|.++.++. ...+|+.|++++|.+..+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.+..+|..
T Consensus 331 ~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 331 NNQLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred cCccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc
Confidence 999987764 225899999999999988753 36789999999999988754 35799999999999988754
Q ss_pred hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (582)
Q Consensus 249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (582)
.++|+.|++++|.+..++.. ...++.|++++|.++.+|..+..+++++.+++++|+++.
T Consensus 401 ---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 ---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 36899999999999987753 346889999999999999999999999999999999853
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=3e-20 Score=191.85 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=24.4
Q ss_pred CccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChH
Q 007984 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421 (582)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~ 421 (582)
+|+.|++++|.++.+|..+..+++|+.|++++|.+++....
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 45556666666666666566666666666666666554433
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-22 Score=181.96 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=109.3
Q ss_pred ccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccC-CcccccchhhhcccccCcEEEcc
Q 007984 116 LVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEG-NKLTVLSNNLIASWTMLTELIAS 192 (582)
Q Consensus 116 L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~ 192 (582)
-..+.+..|+++.+|. .|+.+++|+.|+++.|.++.| |.+|..+..+.+|-+.+ |+|++++.++|+++..++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3445555666665553 555666666666666666644 33466666665555444 66666666666666666666666
Q ss_pred CCccCccc-hhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCcc---c----------chhhhccCCCcE
Q 007984 193 KNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---L----------PAELGKLSKLGT 257 (582)
Q Consensus 193 ~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~---l----------~~~l~~~~~L~~ 257 (582)
-|++..+. ..+..++++..|.+.+|.+..++. .+..+..++++.+..+.+.. + +-.++...-...
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 66665543 456666666667777766666654 56666666666666555321 1 111111112222
Q ss_pred EEcccCcccccchhhhcccccEE--Ec-cCCCCCCC-C-ccccCCCCCCeEEccCCCCccccccccCC
Q 007984 258 LDLHSNQLKEYCVEACQLRLSVL--DL-SNNSLSGL-P-PEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (582)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~L~~l--~l-~~~~l~~~-~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 320 (582)
..+.+..+..++...+...++.+ .+ +.+....+ | ..|..+++|+++++++|.++.+...+|.+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 22233333333333333332222 11 12222222 2 13677777777777777777666555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.2e-19 Score=186.83 Aligned_cols=246 Identities=25% Similarity=0.384 Sum_probs=173.4
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 125 (582)
+..+|++++..++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 45677777777777665443 467777777777777766443 467777777777777765443 367777777777
Q ss_pred CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (582)
Q Consensus 126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (582)
+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|+++.++.. + .+.|+.|++++|.+..+|..+.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCcccc-
Confidence 777765543 467777777777777766543 4777778777777766543 1 2467777788887777665443
Q ss_pred CCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (582)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 285 (582)
++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+. ++|++|++++|.+..++... ...++.+++++|
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N 398 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-PAALQIMQASRN 398 (754)
T ss_pred -ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence 578888888888887776553 688888888888887776553 68888888888888776653 335888888888
Q ss_pred CCCCCCcccc----CCCCCCeEEccCCCCc
Q 007984 286 SLSGLPPEIG----KMTTLRKLLLTGNPLR 311 (582)
Q Consensus 286 ~l~~~~~~l~----~~~~L~~L~l~~~~~~ 311 (582)
.+..+|..+. ..+.+..+++.+|++.
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888766443 3577888999998874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.6e-19 Score=186.34 Aligned_cols=246 Identities=26% Similarity=0.407 Sum_probs=205.7
Q ss_pred hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhC
Q 007984 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (582)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 89 (582)
....|++++..++.+|..+ .++++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I---------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI---------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP- 240 (754)
T ss_pred CceEEEeCCCCcCcCCccc---------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence 4578999999999999866 4579999999999999987654 589999999999999887654
Q ss_pred CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (582)
.+|+.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 479999999999999987764 589999999999998887554 589999999999998876554 5799999999
Q ss_pred CcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhh
Q 007984 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249 (582)
Q Consensus 170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l 249 (582)
|.+..++.. ..++|+.|++++|.+..+|..+. ++|+.|++++|.+..+|..+ .++|+.|++++|.+..+|..+
T Consensus 314 N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 314 NSLTALPET---LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred CccccCCcc---ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence 999877643 23689999999999998887664 79999999999999887655 368999999999999998876
Q ss_pred hccCCCcEEEcccCcccccchhhhc-----ccccEEEccCCCCCC
Q 007984 250 GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG 289 (582)
Q Consensus 250 ~~~~~L~~L~l~~~~~~~~~~~~~~-----~~L~~l~l~~~~l~~ 289 (582)
. ..|+.|++++|++..++..... ..+..+++.+|.+..
T Consensus 387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 5 3799999999999887654321 347889999998763
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-19 Score=144.54 Aligned_cols=201 Identities=33% Similarity=0.558 Sum_probs=173.2
Q ss_pred hhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCc
Q 007984 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454 (582)
Q Consensus 375 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 454 (582)
.++....++.|.+++|+++.+|..++.+.+|++|++++|.+.+++.. ++++++|+.|++.-|++...+. .|+.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr-gfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR-GFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc-ccCCCchhh
Confidence 44567788999999999999999999999999999999999999876 6999999999999888876665 499999999
Q ss_pred EEeCCCCcCCCC-CCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcC
Q 007984 455 ILDLSYNIASLP-ENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532 (582)
Q Consensus 455 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l 532 (582)
.||+..|+++.- .+.-|-.+..|+.|++ .+...-+|...+.+++|+.|.+.+|++-++|..+..++.|++|++.||++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 999999988644 3445667889999999 66677788899999999999999999999999999999999999999999
Q ss_pred CcCCCccccc--ccccceeeccCCCCCcchHHHhccchHHHHHHHHh
Q 007984 533 SALPPELGLL--EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 577 (582)
Q Consensus 533 ~~l~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (582)
+.+|+.+... .-+=+.+.+..|++...-++.|.........|++.
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirt 232 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRT 232 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhh
Confidence 9999976432 23446688899999988899999888887777764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=139.80 Aligned_cols=161 Identities=29% Similarity=0.455 Sum_probs=115.7
Q ss_pred ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEc
Q 007984 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (582)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l 121 (582)
+++++++.|.+|++.++.+|..+..+.+|++|+++++++..+|..++.+++|+.|+++-|.+..+|..|+.++.|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcCC--cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc
Q 007984 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (582)
Q Consensus 122 ~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (582)
.+|.+. .+|..|..+..|+.|.+++|.+..+|...+.+++|+.|.+..|.+-.++.. ++.+..|++|.+.+|.++.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 777766 566667777777777777777777777777777777777777666555443 55666666666666666665
Q ss_pred chhh
Q 007984 200 PETI 203 (582)
Q Consensus 200 ~~~l 203 (582)
|..+
T Consensus 189 ppel 192 (264)
T KOG0617|consen 189 PPEL 192 (264)
T ss_pred Chhh
Confidence 5433
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=6.8e-16 Score=150.02 Aligned_cols=225 Identities=25% Similarity=0.255 Sum_probs=145.1
Q ss_pred ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc-------cchhhhCCCCCcEEecCCCcCcc-CChhh
Q 007984 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIMK-IPDEI 110 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~-l~~~~ 110 (582)
..++++++++++.++ .++..+...+.++.++++++.+.. ++..+..+++|++|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 566888999888874 355567777888888888876652 23466778888888888887762 33334
Q ss_pred hcc---CCccEEEccCCcCCc-----CCcccccC-CCCCeEEcCCCcCC-----CCccccccCCCCcEEEccCCcccccc
Q 007984 111 GSA---TALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS 176 (582)
Q Consensus 111 ~~~---~~L~~L~l~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~ 176 (582)
..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.+. .++..+..+++|++|++++|.++...
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 333 348888888887762 22344555 78888888888776 33445667778888888887776321
Q ss_pred h----hhhcccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCccC-----CcCC-cCCCCCcEEEcCCCc
Q 007984 177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-----PSSI-SGCCSLAEFYMGNNA 241 (582)
Q Consensus 177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~-----~~~l-~~~~~L~~L~l~~~~ 241 (582)
. ..+...++|++|++++|.+.. +...+..+++|+.|++++|.+... ...+ ...+.|+.|++.+|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1 123445677788887776642 233455667777777777766521 1111 124677777777776
Q ss_pred Cc-----ccchhhhccCCCcEEEcccCccccc
Q 007984 242 LS-----ALPAELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 242 i~-----~l~~~l~~~~~L~~L~l~~~~~~~~ 268 (582)
++ .+...+..+++|+++++++|.++..
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 64 2334455556777777777766643
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=5.6e-16 Score=150.60 Aligned_cols=245 Identities=27% Similarity=0.311 Sum_probs=132.6
Q ss_pred EEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCcc-------CChhhhccC
Q 007984 49 KLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-------IPDEIGSAT 114 (582)
Q Consensus 49 ~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~~ 114 (582)
.|+|..+.++ .....+..+..|++|+++++.++ .++..+...+.++.++++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666554 34455667777999999988875 345566777888888888776652 223455677
Q ss_pred CccEEEccCCcCCc-CCcccccC---CCCCeEEcCCCcCCC-----CccccccC-CCCcEEEccCCcccccc----hhhh
Q 007984 115 ALVKFDCSSNQLKE-LPSSLGRC---LNLSDFKASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLI 180 (582)
Q Consensus 115 ~L~~L~l~~~~~~~-l~~~~~~~---~~L~~L~l~~~~~~~-----i~~~l~~~-~~L~~L~l~~~~i~~~~----~~~~ 180 (582)
+|++|++++|.+.. .+..+..+ ++|++|++++|.+.. +...+..+ ++|+.|++++|.++... ...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 78888887777652 22223222 337777777776652 22334455 66666666666655211 1123
Q ss_pred cccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCC
Q 007984 181 ASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255 (582)
Q Consensus 181 ~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L 255 (582)
..+++|++|++++|.+.. ++..+...++|+.|++++|.+.... ...+...+..+++|
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------------------~~~l~~~~~~~~~L 223 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG------------------ASALAETLASLKSL 223 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH------------------HHHHHHHhcccCCC
Confidence 334445555555554431 1122333344444444444433110 00122334445556
Q ss_pred cEEEcccCcccccchhh----h---cccccEEEccCCCCCC-----CCccccCCCCCCeEEccCCCCc
Q 007984 256 GTLDLHSNQLKEYCVEA----C---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR 311 (582)
Q Consensus 256 ~~L~l~~~~~~~~~~~~----~---~~~L~~l~l~~~~l~~-----~~~~l~~~~~L~~L~l~~~~~~ 311 (582)
++|++++|.++...... . ...++.+++++|.+++ +...+..+++|+++++++|.+.
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 66666665554311110 0 1246666666665542 2234555677888888888764
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-13 Score=124.40 Aligned_cols=177 Identities=20% Similarity=0.170 Sum_probs=101.0
Q ss_pred ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCc----ccch-------hhhCCCCCcEEecCCCcCc-cC
Q 007984 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELPA-------AIGELHMLKSLDVSFNSIM-KI 106 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~----~l~~-------~~~~~~~L~~L~l~~~~~~-~l 106 (582)
...++++++|++.+. .+...+.+.+.|+..++++--.. .+|+ ++-.+++|++|+||+|.+. ..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 456788888888776 34456777778888877754222 3333 4566778888888888776 22
Q ss_pred C----hhhhccCCccEEEccCCcCCcC--------------CcccccCCCCCeEEcCCCcCCC-----CccccccCCCCc
Q 007984 107 P----DEIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS 163 (582)
Q Consensus 107 ~----~~~~~~~~L~~L~l~~~~~~~l--------------~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~ 163 (582)
+ .-+..++.|++|.+.+|.+... ......-+.|+++....|++.+ ++..|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 2 2345688888888888877521 1122344566666666665542 223355556666
Q ss_pred EEEccCCcccc----cchhhhcccccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCc
Q 007984 164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (582)
Q Consensus 164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~ 220 (582)
.+.+..|.|.. ....++..|++|+.|++.+|.++. +...+..+++|+.|++++|.+.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 66666555441 222234455555555555554432 2223344445555555555443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=3.4e-14 Score=135.86 Aligned_cols=206 Identities=29% Similarity=0.389 Sum_probs=137.7
Q ss_pred ChHHHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCC
Q 007984 1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL 80 (582)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~ 80 (582)
+++++..|-+-+.+.+++.++..+|-..+. +........+++.+.+.++|..+..|..|+.+.++.|.+
T Consensus 42 l~r~leeA~~sg~l~Ls~rrlk~fpr~a~~-----------~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~ 110 (722)
T KOG0532|consen 42 LERALEEAEYSGRLLLSGRRLKEFPRGAAS-----------YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI 110 (722)
T ss_pred hhHHHHHHhhhcccccccchhhcCCCcccc-----------ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc
Confidence 467888888999999999998888876643 223445566777777777777666677777777777777
Q ss_pred cccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCC
Q 007984 81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS 160 (582)
Q Consensus 81 ~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~ 160 (582)
..+|.++.++..|++++|+.|.+..+|..+..++ |+.|-+++|+++.+|..++..++|..|+.+.|++..++.-+..+.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 7777777777777777777777776666554443 666666777777666666666666666666666666666666666
Q ss_pred CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc
Q 007984 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220 (582)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 220 (582)
.|+.|++..|++.+++.. +. .-.|..|+++.|.+..+|..|.+++.|+.|-+.+|.+.
T Consensus 190 slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 666666666666655554 22 34455566666666666656666666666666665554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=2.1e-13 Score=130.59 Aligned_cols=190 Identities=33% Similarity=0.483 Sum_probs=170.8
Q ss_pred ceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCC
Q 007984 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM 92 (582)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 92 (582)
..|++.+++-.+|.++-. |..|+.+.+..|.+..+|..+..+..|+.|+|+.|+++.+|..+..++
T Consensus 79 ~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp- 144 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP- 144 (722)
T ss_pred hhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-
Confidence 468899999999988754 567899999999999999999999999999999999999988887776
Q ss_pred CcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcc
Q 007984 93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172 (582)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i 172 (582)
|+.|-+++|+++.+|..++....|.+|+.+.|.+..+|..++++.+|+.|+++.|.+..+|+.+. .-.|..||+++|++
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988 56799999999999
Q ss_pred cccchhhhcccccCcEEEccCCccCccchhhc---CCCCccEEeCCCCc
Q 007984 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNR 218 (582)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~---~~~~L~~L~l~~~~ 218 (582)
..++.. |..++.|++|-|.+|.+..-|+.+. ...-.+.|+...|+
T Consensus 224 s~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 SYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 999887 9999999999999999988776543 34446778887774
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=6.7e-12 Score=125.42 Aligned_cols=193 Identities=33% Similarity=0.489 Sum_probs=100.7
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccC-CccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC
Q 007984 73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS 151 (582)
Q Consensus 73 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 151 (582)
+++..+.+..-...+.....++.+++.++.+..++....... +|+.|+++++++..++..+..+++|+.|++++|.+.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence 444444442222333344555555555555555554444442 5555555555555554445555555555555555555
Q ss_pred CccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCC
Q 007984 152 LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS 231 (582)
Q Consensus 152 i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 231 (582)
++......+.|+.|+++++++.+++.. ......|+++.+++|.....+..+....++..+.+.++++..++..++.+++
T Consensus 178 l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 178 LPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 544444555555555555555555442 2333445555555554444444455555555555555555554555555555
Q ss_pred CcEEEcCCCcCcccchhhhccCCCcEEEcccCcccc
Q 007984 232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (582)
Q Consensus 232 L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~ 267 (582)
++.|++++|.+..++. ++...+++.++++++.+..
T Consensus 257 l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 257 LETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cceecccccccccccc-ccccCccCEEeccCccccc
Confidence 6666666666665544 5555566666666555543
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=7.9e-13 Score=119.34 Aligned_cols=231 Identities=22% Similarity=0.312 Sum_probs=172.1
Q ss_pred HHHHHhhcCceecCCCCCC-CcchHHHhhhccccCCCccccccCccEEEcCCCCcc----chh-------HhhcCCCCCc
Q 007984 4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLK-------EDLRNLPLLT 71 (582)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~----~~~-------~~~~~~~~L~ 71 (582)
.+.....+..+++|++.++ .-...+...+.. -++|++.+++..-.. ++| .++..+++|+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~---------~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS---------KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhh---------cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 4455678889999999988 333333333333 568999999875222 444 4567888999
Q ss_pred EEEcCCCCCc--c---cchhhhCCCCCcEEecCCCcCccCC--------------hhhhccCCccEEEccCCcCCcCC--
Q 007984 72 VLNVSHNKLS--E---LPAAIGELHMLKSLDVSFNSIMKIP--------------DEIGSATALVKFDCSSNQLKELP-- 130 (582)
Q Consensus 72 ~L~L~~~~~~--~---l~~~~~~~~~L~~L~l~~~~~~~l~--------------~~~~~~~~L~~L~l~~~~~~~l~-- 130 (582)
+|+|+.|.+. . +-+-++.+..|+.|-|.+|.+.... .-.+.-++|+++..+.|++..-+
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence 9999999877 2 2335678999999999999887321 12345689999999999887443
Q ss_pred ---cccccCCCCCeEEcCCCcCC-----CCccccccCCCCcEEEccCCcccccc----hhhhcccccCcEEEccCCccCc
Q 007984 131 ---SSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG 198 (582)
Q Consensus 131 ---~~~~~~~~L~~L~l~~~~~~-----~i~~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~ 198 (582)
..+...+.|+.+.+..|.+. -+..++..|++|+.|++..|.++.-. +.++..+++|+++++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 45778899999999999876 34567899999999999999887433 3346678899999999998854
Q ss_pred c-----chhh-cCCCCccEEeCCCCcCc-----cCCcCCcCCCCCcEEEcCCCcCc
Q 007984 199 M-----PETI-GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 199 ~-----~~~l-~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~i~ 243 (582)
- ..++ ...+.|+.|++.+|.++ .+...+...+.|+.|++.+|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2 1222 34689999999999987 23334556899999999999983
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-12 Score=121.25 Aligned_cols=203 Identities=21% Similarity=0.213 Sum_probs=133.1
Q ss_pred cCCCCCcEEEcCCCCCcccc--hhhhCCCCCcEEecCCCcCccC---ChhhhccCCccEEEccCCcCCcCCc--ccccCC
Q 007984 65 RNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQLKELPS--SLGRCL 137 (582)
Q Consensus 65 ~~~~~L~~L~L~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~ 137 (582)
.++.+|+++.|.++.+...+ .....|++++.|||+.|-+... ..-+..+++|+.|+++.|.+..... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45667777777777776554 3566788888888887766533 2335677888888888877663221 122567
Q ss_pred CCCeEEcCCCcCC--CCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEe
Q 007984 138 NLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLD 213 (582)
Q Consensus 138 ~L~~L~l~~~~~~--~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~ 213 (582)
.|+.|.++.|+++ ++...+..+++|+.|++.+|...-+......-...|++|++++|.+-..+ ...+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 7888888888776 44445667788888888877543333333555667777777777775554 3456677777778
Q ss_pred CCCCcCccC--CcC-----CcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCcccc
Q 007984 214 LHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE 267 (582)
Q Consensus 214 l~~~~~~~~--~~~-----l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~~ 267 (582)
++.|.+..+ |+. ...+++|+.|++..|.+... -..+..+++|+.+.+..+.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 877777644 222 34567777777777777533 2345566777777776666654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=7.6e-12 Score=106.19 Aligned_cols=121 Identities=26% Similarity=0.368 Sum_probs=38.8
Q ss_pred ccCccEEEcCCCCccchhHhhc-CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhh-hccCCccEEEc
Q 007984 44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~l 121 (582)
+..+++|+|+++.|+.+. .+. .+.+|+.|++++|.++.+ +.+..+++|++|++++|.++++...+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 556777888887777664 343 567777778877777766 35666777777777777777775544 35777777777
Q ss_pred cCCcCCcCC--cccccCCCCCeEEcCCCcCCCCccc----cccCCCCcEEE
Q 007984 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLD 166 (582)
Q Consensus 122 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~ 166 (582)
++|++.++. ..+..+++|+.|++.+|.+..-+.. +..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 777776443 2344556666666666655433211 34445555544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=2e-11 Score=122.07 Aligned_cols=195 Identities=34% Similarity=0.464 Sum_probs=130.9
Q ss_pred EEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCC-CCCeEEcCCCcCCCCccccccCCCCcEEEccCCccc
Q 007984 95 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173 (582)
Q Consensus 95 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~ 173 (582)
.+++..+.+......+...+.++.|.+.++.+.+++....... +|+.|+++++.+..++..+..+++|+.|+++.|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5666666664333445555778888888888887777666664 788888888888877767777788888888888777
Q ss_pred ccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccC
Q 007984 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLS 253 (582)
Q Consensus 174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~ 253 (582)
+++.. .+..+.|+.+++++|.+..+|........|+++.+++|.....+..+..+.++..+.+.++++..++..++.++
T Consensus 177 ~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 77653 23667777777777777777765555556777777777655555566666667666677776666666666666
Q ss_pred CCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984 254 KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290 (582)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 290 (582)
+++.|++++|.++.++......+++.++++++.+...
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCcccccc
Confidence 6777777776666655533333355555555554443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-12 Score=120.47 Aligned_cols=206 Identities=27% Similarity=0.266 Sum_probs=143.0
Q ss_pred ccccEEEecCCCCccCCh--hhhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccCcCCCCChH-HhhCCCCCC
Q 007984 357 VTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLS 430 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~ 430 (582)
..|+++.+.++.+...+. ....+++++.|+++.|-+.. +......+|+|+.|+++.|++...... .-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456778888887776653 55568888888888887665 333456788888888888877654332 224578888
Q ss_pred EeeCCCCCCccCCC-ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc--hhhhccCCCCEEecCC
Q 007984 431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP--TDILRLQQLRILDLSQ 506 (582)
Q Consensus 431 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~--~~~~~~~~L~~L~l~~ 506 (582)
.|.++.|.++.-.- .....+|+|+.|++..|....+......-+..|++|+| .+++...+ .....++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 88888888774221 12456888888888888543344445566778888888 66666555 4677888888888888
Q ss_pred CcCCcc--chh-----hcCCCCCCEEeCCCCcCCcCCC--cccccccccceeeccCCCCCcchHHH
Q 007984 507 NSLQSI--PEG-----FKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSIRRTI 563 (582)
Q Consensus 507 ~~l~~l--~~~-----~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~~L~~L~l~~~~~~~~~~~~ 563 (582)
|.+.++ |.+ ....++|++|++..|++...+. .++.+ ++|+.|.+.+|++..-...+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ln~e~~~a 345 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYLNKETDTA 345 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhcccccccccccce
Confidence 888755 322 3567788888888888865544 33444 78888888888876655443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.3e-11 Score=104.78 Aligned_cols=106 Identities=29% Similarity=0.420 Sum_probs=23.9
Q ss_pred ccCCccEEEccCCcCCcCCcccc-cCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEE
Q 007984 112 SATALVKFDCSSNQLKELPSSLG-RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190 (582)
Q Consensus 112 ~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 190 (582)
++.++++|+++++.+..+. .++ .+.+|+.|++++|.+..+ +.+..+++|++|++++|+++++.......+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445555666665555542 233 345555555555555555 2455555666666666655555433123345555555
Q ss_pred ccCCccCccc--hhhcCCCCccEEeCCCCcC
Q 007984 191 ASKNLLNGMP--ETIGSLSRLIRLDLHQNRI 219 (582)
Q Consensus 191 l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~ 219 (582)
+++|.+..+. ..+..+++|+.|++.+|.+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 5555443322 1233334444444444433
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=8.2e-12 Score=110.29 Aligned_cols=180 Identities=26% Similarity=0.298 Sum_probs=107.6
Q ss_pred hhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc------------------------ccccCCCCCe
Q 007984 86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS------------------------SLGRCLNLSD 141 (582)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~------------------------~~~~~~~L~~ 141 (582)
.+..+++|+.+.++.|.-.++..-...-|.|+++.++...+...|. ....++.|++
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 3455666777777766655544433445566666665554332211 1223456666
Q ss_pred EEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCcc
Q 007984 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221 (582)
Q Consensus 142 L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 221 (582)
+++++|.++.+.+...-.++++.|++++|++..++. ++.+++|+.|++++|.+..+..+-.++-+.++|.+++|.+..
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 777777777666666666777777777777766655 666666777777776666655555556666666666666655
Q ss_pred CCcCCcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCccccc
Q 007984 222 IPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 222 ~~~~l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~~~ 268 (582)
+ ..+..+.+|..|++++|+|..+ -..++++|.|+.+.+.+|.+..+
T Consensus 367 L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 367 L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5 3455556666666666666643 23455666666666666655543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.3e-11 Score=107.54 Aligned_cols=201 Identities=20% Similarity=0.239 Sum_probs=139.8
Q ss_pred ccCccEEEcCCCC-------cc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccC----C---
Q 007984 44 AVDLQKLILAHNN-------IE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI----P--- 107 (582)
Q Consensus 44 ~~~l~~L~l~~~~-------i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l----~--- 107 (582)
|..|+.|.+++.. |. .+|-.+.-+++|+.+.++.|.-..|.+....-|.|+.+.+....+... |
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence 5566777666531 11 122234455667777777765554433333345555555544332210 1
Q ss_pred -----------------hhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCC
Q 007984 108 -----------------DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (582)
Q Consensus 108 -----------------~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~ 170 (582)
..+....-|+++++++|.++.+..+..-.|.++.|+++.|.+..+. .++.+++|+.|++++|
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN 339 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc
Confidence 1223345688899999988888777777889999999999888874 4888899999999999
Q ss_pred cccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC--CcCCcCCCCCcEEEcCCCcCcccch
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPA 247 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l~~ 247 (582)
.++.+... -.++-+++.|.+++|.++.+ +.+.++-+|..||+++|++..+ ...+++++.|+++.+.+|.+..++.
T Consensus 340 ~Ls~~~Gw-h~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 340 LLAECVGW-HLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhhhh-HhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 88877654 44667888899999888776 3566778899999999998844 3578899999999999999886654
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.00 E-value=4.9e-11 Score=119.17 Aligned_cols=241 Identities=27% Similarity=0.360 Sum_probs=119.9
Q ss_pred CCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCC
Q 007984 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (582)
Q Consensus 67 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 146 (582)
+..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 344444444444444432334455555555555555555543345555555555555555544 2334444455555555
Q ss_pred CcCCCCccccccCCCCcEEEccCCcccccch-hhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC
Q 007984 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (582)
Q Consensus 147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (582)
|.+..+ ..+..++.|+.+++++|++..+.. . ...+.+++.+.+.+|.+..+. .+.....+..+++.++.+..+. .
T Consensus 150 N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~ 225 (414)
T KOG0531|consen 150 NLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-G 225 (414)
T ss_pred Ccchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-C
Confidence 555554 234445556666666655555544 2 345555555556655554432 1122223333355555544331 1
Q ss_pred CcCCC--CCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC---CCc--cccCCC
Q 007984 226 ISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPP--EIGKMT 298 (582)
Q Consensus 226 l~~~~--~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~---~~~--~l~~~~ 298 (582)
+.... .|+.++++++.+...+..+..+.++..+++.++.+...........+..+....+.+.. ... .....+
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 11122 25666666666665544455556666666666666554443333333333333443332 111 134566
Q ss_pred CCCeEEccCCCCcc
Q 007984 299 TLRKLLLTGNPLRT 312 (582)
Q Consensus 299 ~L~~L~l~~~~~~~ 312 (582)
.++.+.+..++...
T Consensus 306 ~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 306 TLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccCcccc
Confidence 77777777776643
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=7.3e-10 Score=118.25 Aligned_cols=103 Identities=31% Similarity=0.484 Sum_probs=51.4
Q ss_pred cCccEEEcCCCC--ccchhH-hhcCCCCCcEEEcCCC-CCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984 45 VDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 45 ~~l~~L~l~~~~--i~~~~~-~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (582)
+.++.|-+..+. +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+++++.+.++|..+.++..|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 345555555543 333332 3455555555555543 233555555555555555555555555555555555555555
Q ss_pred ccCCcCC-cCCcccccCCCCCeEEcCCC
Q 007984 121 CSSNQLK-ELPSSLGRCLNLSDFKASNN 147 (582)
Q Consensus 121 l~~~~~~-~l~~~~~~~~~L~~L~l~~~ 147 (582)
+..+... .++.....+.+|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 5544322 22233333555555555444
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=1.8e-09 Score=115.37 Aligned_cols=126 Identities=27% Similarity=0.366 Sum_probs=98.2
Q ss_pred cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCC--Ccccch-hhhCCCCCcEEecCCC-cCccCChhhhccCCccEEE
Q 007984 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~ 120 (582)
..+|.+.+-++.+..++.... ++.|++|-+.++. +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 467888888887777655443 4578888888875 555544 5788999999999977 6678999999999999999
Q ss_pred ccCCcCCcCCcccccCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc
Q 007984 121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK 171 (582)
Q Consensus 121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~ 171 (582)
++++.+..+|..+.+++.|.+|++..+... .++.....+++|++|.+....
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999999999999998877544 444455668888888886654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=1.5e-10 Score=115.65 Aligned_cols=195 Identities=33% Similarity=0.404 Sum_probs=137.5
Q ss_pred ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC
Q 007984 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438 (582)
Q Consensus 359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 438 (582)
++.+.+..+.+..+...+..+.+++.+++.++.+..+...+..+++|++|++++|.|+++.. +..++.|+.|++.+|.
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNL 151 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCc
Confidence 34444555555555455667889999999999998887557889999999999999998866 6778889999999999
Q ss_pred CccCCCccccCCCCCcEEeCCCCcCCCCCC-CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhc
Q 007984 439 LRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK 517 (582)
Q Consensus 439 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~ 517 (582)
+..+.. +..+++|+.+++++|.+..+.. . ...+.+++++.+..+.......+..+..+..+++..|.+..+ .++.
T Consensus 152 i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~-~~l~ 227 (414)
T KOG0531|consen 152 ISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL-EGLN 227 (414)
T ss_pred chhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec-cCcc
Confidence 988774 5668999999999998887765 3 578889999999554444444444445555556777766655 2233
Q ss_pred CCCC--CCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcch
Q 007984 518 NLTS--LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 560 (582)
Q Consensus 518 ~l~~--L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~ 560 (582)
.+.. |+++++++|++..++..+... +.++.+++.+|.+....
T Consensus 228 ~~~~~~L~~l~l~~n~i~~~~~~~~~~-~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRISRSPEGLENL-KNLPVLDLSSNRISNLE 271 (414)
T ss_pred cchhHHHHHHhcccCcccccccccccc-ccccccchhhccccccc
Confidence 3333 677777777766654332222 66777777777665543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=7.8e-10 Score=77.06 Aligned_cols=60 Identities=45% Similarity=0.677 Sum_probs=55.8
Q ss_pred CCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCC
Q 007984 497 QQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 556 (582)
Q Consensus 497 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~ 556 (582)
++|++|++++|+++.+|. .|.++++|++|++++|+++.+++..+..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999999974 589999999999999999999999999999999999999975
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=1.9e-09 Score=75.10 Aligned_cols=60 Identities=40% Similarity=0.650 Sum_probs=39.2
Q ss_pred CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
|+|++|++++|+++.++...|.++++|++|++++|.+..+++.+|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666666666666666666666666666666666666666666666666666664
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=3.2e-10 Score=112.18 Aligned_cols=125 Identities=30% Similarity=0.413 Sum_probs=70.4
Q ss_pred CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCC
Q 007984 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN 170 (582)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~ 170 (582)
+|.+.+.++|.+..+..++.-++.|++|+++.|++.... .+..|++|++||+++|.+..+|.. ...| +|+.|.+.+|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 355555566665555555666666666666666666553 555666666666666666655543 2222 3666666666
Q ss_pred cccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEeCCCCcCc
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRIL 220 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~ 220 (582)
.++.+.. +.++++|+.|++++|.+.... ..+..+..|+.|.+.||.+.
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6655444 556666666666666554322 12233445566666666544
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4e-09 Score=93.53 Aligned_cols=149 Identities=19% Similarity=0.243 Sum_probs=91.7
Q ss_pred CCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCc-CCc--CCcccccCCCCCeE
Q 007984 69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKE--LPSSLGRCLNLSDF 142 (582)
Q Consensus 69 ~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~~~L~~L 142 (582)
.|++|||+...++ ++-..++.|.+|+.|.+.++.+. .+...+....+|+.|++++|. ++. +...+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 6888888888877 44456788888988888888877 455557778888899988775 442 22356788888889
Q ss_pred EcCCCcCCC-Ccc-cccc-CCCCcEEEccCCccc--ccchh-hhcccccCcEEEccCCcc-Cc-cchhhcCCCCccEEeC
Q 007984 143 KASNNCITS-LPE-DLAD-CSKMSKLDVEGNKLT--VLSNN-LIASWTMLTELIASKNLL-NG-MPETIGSLSRLIRLDL 214 (582)
Q Consensus 143 ~l~~~~~~~-i~~-~l~~-~~~L~~L~l~~~~i~--~~~~~-~~~~~~~L~~L~l~~~~~-~~-~~~~l~~~~~L~~L~l 214 (582)
++++|.... ... ...+ -++|..|++++++-. .-.-. ....|++|.+|++++|.. +. ....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 988886651 111 1111 257788888776321 11111 134556666666665533 11 1123445555555555
Q ss_pred CCC
Q 007984 215 HQN 217 (582)
Q Consensus 215 ~~~ 217 (582)
+.|
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 555
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=1.5e-08 Score=94.33 Aligned_cols=131 Identities=22% Similarity=0.222 Sum_probs=62.7
Q ss_pred cCCCCCCEEEcccC-cCCCCChHHhh-CCCCCCEeeCCCCC-CccCCCccc-cCCCCCcEEeCCCCcCCCCC--CCCCCC
Q 007984 400 SSCASLQTLILSRN-KIKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASLPE--NPPFSS 473 (582)
Q Consensus 400 ~~~~~L~~L~l~~~-~l~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--~~~~~~ 473 (582)
..+..|++++.+++ .+++.....++ ++++|+.+.+.+|+ ++......+ .+++.|+.+++.++...... ...-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 34566667766665 44444333333 46677777776664 333322222 34566666666665432221 111224
Q ss_pred Cccchhhhh--ccccccC-----chhhhccCCCCEEecCCCcCC--ccchhhcCCCCCCEEeCCCC
Q 007984 474 LPHLQELYL--RMQLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDN 530 (582)
Q Consensus 474 ~~~L~~L~l--~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n 530 (582)
|+.|+.+.+ +..++.. ...-.++..|+.+.+++|... ..-+.+..|+.||.+++-+|
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 455554444 1111111 111234455666666666433 22234555666666666666
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.2e-08 Score=89.01 Aligned_cols=173 Identities=18% Similarity=0.150 Sum_probs=120.0
Q ss_pred CccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCc-ccchhhhCCCCCcEEecCCC-cCccC--ChhhhccCCccEE
Q 007984 46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKI--PDEIGSATALVKF 119 (582)
Q Consensus 46 ~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~~l--~~~~~~~~~L~~L 119 (582)
.|+.+|||...|+ .+-..+..|.+|+.|.|.+..++ .+...+....+|+.|+++.| .+++. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888999988777 34446778889999999998887 45567788899999999887 45543 2336789999999
Q ss_pred EccCCcCCc--CCccccc-CCCCCeEEcCCCcCC----CCccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEc
Q 007984 120 DCSSNQLKE--LPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA 191 (582)
Q Consensus 120 ~l~~~~~~~--l~~~~~~-~~~L~~L~l~~~~~~----~i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l 191 (582)
+++-|.... +.....+ -++|+.|+++|+.-. .+..-...|++|.+||++++. ++.-....+.+++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999887551 1111222 357888888888422 333335678999999998774 34333334777888999999
Q ss_pred cCCccCc--cchhhcCCCCccEEeCCCCc
Q 007984 192 SKNLLNG--MPETIGSLSRLIRLDLHQNR 218 (582)
Q Consensus 192 ~~~~~~~--~~~~l~~~~~L~~L~l~~~~ 218 (582)
+.|..-. .--.+...+.|..||+.++-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8885421 11235667888888888763
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=7.1e-07 Score=78.50 Aligned_cols=204 Identities=20% Similarity=0.186 Sum_probs=106.9
Q ss_pred ccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCCcEEecCCCcCc-cC
Q 007984 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI 106 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~----~l~-------~~~~~~~~L~~L~l~~~~~~-~l 106 (582)
...+++++||||.|. .+...+++-.+|+..+++.--.. .++ .++-.||+|+.++|++|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 456788888888776 33455666677777777654222 222 25567888888888888776 33
Q ss_pred Ch----hhhccCCccEEEccCCcCCcC-----Ccc---------cccCCCCCeEEcCCCcCCCCcc-----ccccCCCCc
Q 007984 107 PD----EIGSATALVKFDCSSNQLKEL-----PSS---------LGRCLNLSDFKASNNCITSLPE-----DLADCSKMS 163 (582)
Q Consensus 107 ~~----~~~~~~~L~~L~l~~~~~~~l-----~~~---------~~~~~~L~~L~l~~~~~~~i~~-----~l~~~~~L~ 163 (582)
|. -+...+.|.||.+++|.+.-+ ... ..+-|.|+++.+..|++...+. .+..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 33 245677788888888876522 111 1233555555555555543322 123334455
Q ss_pred EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCcc-----CCcCCcCCCCCcEEEcC
Q 007984 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMG 238 (582)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~ 238 (582)
.+.+..|.|.--+...+ +-..+..+.+|+.||+.+|.++. +..++..-+.|+.|.+.
T Consensus 189 ~vki~qNgIrpegv~~L------------------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 189 EVKIQQNGIRPEGVTML------------------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred eEEeeecCcCcchhHHH------------------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 55555444431100000 00112234555666666555541 12233334445666666
Q ss_pred CCcCcc-----cchhh--hccCCCcEEEcccCcc
Q 007984 239 NNALSA-----LPAEL--GKLSKLGTLDLHSNQL 265 (582)
Q Consensus 239 ~~~i~~-----l~~~l--~~~~~L~~L~l~~~~~ 265 (582)
+|.++. +-..+ ...|+|..|...+|.+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 665551 11112 2346777777766654
No 46
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.34 E-value=4.6e-07 Score=74.66 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=41.9
Q ss_pred HhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch-hhhccCCCC
Q 007984 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLR 500 (582)
Q Consensus 422 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~ 500 (582)
+|.++++|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+...+|.++++++.+.+......++. .+..++.|+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTEC
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccccccccccccc
Confidence 355555555555543 355555555555555666655553 44444444554444444444222222222 223344555
Q ss_pred EEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCccccccccc
Q 007984 501 ILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSL 546 (582)
Q Consensus 501 ~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L 546 (582)
.+++..+ +..++ ..|.++ .|+++.+.+ .++.++...|..|++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555433 33332 224444 555555554 3444455555554444
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6.9e-07 Score=93.71 Aligned_cols=105 Identities=33% Similarity=0.438 Sum_probs=55.4
Q ss_pred CCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc
Q 007984 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508 (582)
Q Consensus 429 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (582)
++.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+. .+++|+.|++++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~----------------------~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG----------------------SITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh----------------------CCCCCCEEECCCCC
Confidence 55666666666654444566666666666666666554444444 44555555555555
Q ss_pred CC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccCCC
Q 007984 509 LQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNP 555 (582)
Q Consensus 509 l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~~~ 555 (582)
+. .+|..+.++++|++|+|++|+++ .+|..+.....++..+++.+|+
T Consensus 478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 54 34444555555555555555544 3444333222344445554443
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=1.6e-07 Score=73.53 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=62.8
Q ss_pred cCccEEEcCCCCccchhHh---hcCCCCCcEEEcCCCCCcccchhhhC-CCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984 45 VDLQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~---~~~~~~L~~L~L~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (582)
..+..++|++|.+-++++. +.+..+|+..+|++|.+...|..|.. .+-.+.+++.+|.+..+|..+..++.|+.++
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3445556666655544432 33445555556666666666555543 3456666666666666666666666666666
Q ss_pred ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCcc
Q 007984 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154 (582)
Q Consensus 121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~ 154 (582)
++.|.+...|..+..+.++-.|+..++....++.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 6666666555555555566666666655554443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6.5e-07 Score=56.70 Aligned_cols=41 Identities=41% Similarity=0.690 Sum_probs=28.7
Q ss_pred CCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCC
Q 007984 497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537 (582)
Q Consensus 497 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~ 537 (582)
++|++|++++|+++.+|..+.++++|++|++++|+++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46777777777777777667777777777777777776543
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=2.1e-06 Score=90.06 Aligned_cols=91 Identities=26% Similarity=0.329 Sum_probs=66.9
Q ss_pred CccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCC
Q 007984 381 EITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459 (582)
Q Consensus 381 ~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 459 (582)
.++.|+++++.+.. +|..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|++....+..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777888877764 66677778888888888888776555567788888888888888876555567778888888888
Q ss_pred CCcCCCCCCCCC
Q 007984 460 YNIASLPENPPF 471 (582)
Q Consensus 460 ~n~l~~~~~~~~ 471 (582)
+|.+++..+..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 887765554333
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=4.3e-07 Score=80.91 Aligned_cols=197 Identities=19% Similarity=0.169 Sum_probs=105.1
Q ss_pred CcEEEcCCCCCcccch--hh-hCCCCCcEEecCCCcCcc---CChhhhccCCccEEEccCCcCCcCCccc-ccCCCCCeE
Q 007984 70 LTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDF 142 (582)
Q Consensus 70 L~~L~L~~~~~~~l~~--~~-~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L 142 (582)
++.+-+.++.|....+ .| ..+..++.+||..|.++. +..-+.++|.|++|+++.|++......+ ....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3344455555554322 22 235566666666666653 2233456666666666666655221222 234566666
Q ss_pred EcCCCcCC--CCccccccCCCCcEEEccCCcccc--cchhhhcc-cccCcEEEccCCccCccc---hhhcCCCCccEEeC
Q 007984 143 KASNNCIT--SLPEDLADCSKMSKLDVEGNKLTV--LSNNLIAS-WTMLTELIASKNLLNGMP---ETIGSLSRLIRLDL 214 (582)
Q Consensus 143 ~l~~~~~~--~i~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~---~~l~~~~~L~~L~l 214 (582)
-+++..+. .....+..++.+++|.++.|++.. +++..... .+.++.+....|....+. ..-..++++..+-+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 66666443 344445666666666666664431 22221222 234555555555443211 11123467777777
Q ss_pred CCCcCccC--CcCCcCCCCCcEEEcCCCcCccc--chhhhccCCCcEEEcccCccc
Q 007984 215 HQNRILSI--PSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 215 ~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~ 266 (582)
..|.+... .......+.+..|+++.+.|.+. ...+..++.|+.|.++++.+.
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77766533 23455566666777777777633 244666777777777776654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=1.4e-08 Score=100.79 Aligned_cols=123 Identities=24% Similarity=0.243 Sum_probs=53.5
Q ss_pred EEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC
Q 007984 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197 (582)
Q Consensus 118 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (582)
+.+++.|.+..+...+.-++.+++|+++.|++.++. .+..|++|++||+++|.+..++.....+|. |..|.+.+|.++
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence 333444444333334444444555555555444442 444445555555555544444433333333 444455544444
Q ss_pred ccchhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCc
Q 007984 198 GMPETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 198 ~~~~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~ 243 (582)
++. .+.++.+|+.||+++|-+.... ..+..+..|+.|+|.+|.+-
T Consensus 246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 332 2334444455555544433221 22333444444455544443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=4.2e-07 Score=79.91 Aligned_cols=188 Identities=20% Similarity=0.226 Sum_probs=107.8
Q ss_pred hHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCc----cCC-------hhhhccCCccEEEccCC
Q 007984 61 KEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIP-------DEIGSATALVKFDCSSN 124 (582)
Q Consensus 61 ~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~----~l~-------~~~~~~~~L~~L~l~~~ 124 (582)
...+..+..++.++|++|.|.+ +...+.+-.+|+..++++-... .++ .++..|++|++.++|.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 3445557788888888887772 3335566677777777654322 122 22334555555555555
Q ss_pred cCC-cCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhh-------------hcccccCcEEE
Q 007984 125 QLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL-------------IASWTMLTELI 190 (582)
Q Consensus 125 ~~~-~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~-------------~~~~~~L~~L~ 190 (582)
.+. +.|.. +.+.+++-+.|++|.+++|.+..+...- .+.-+.|+++.
T Consensus 103 Afg~~~~e~-------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 103 AFGSEFPEE-------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred ccCcccchH-------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 443 11111 1122344455555555555444332221 23346677777
Q ss_pred ccCCccCccch-----hhcCCCCccEEeCCCCcCccC------CcCCcCCCCCcEEEcCCCcCccc-----chhhhccCC
Q 007984 191 ASKNLLNGMPE-----TIGSLSRLIRLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSAL-----PAELGKLSK 254 (582)
Q Consensus 191 l~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~l-----~~~l~~~~~ 254 (582)
...|.+...+. .+..-.+|+.+.+..|.|..- ...+..+.+|+.|++++|.++.. ...+...+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 77777765542 233335788888888877621 23456678888888888877722 233455567
Q ss_pred CcEEEcccCcccc
Q 007984 255 LGTLDLHSNQLKE 267 (582)
Q Consensus 255 L~~L~l~~~~~~~ 267 (582)
|++|.+..|-++.
T Consensus 244 lrEL~lnDClls~ 256 (388)
T COG5238 244 LRELRLNDCLLSN 256 (388)
T ss_pred hhhccccchhhcc
Confidence 7888877776553
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.21 E-value=1.3e-06 Score=72.01 Aligned_cols=121 Identities=18% Similarity=0.367 Sum_probs=57.1
Q ss_pred cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccc
Q 007984 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (582)
Q Consensus 398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 477 (582)
.|..+++|+.+.+.. .+..+....|..+++|+.+.+.++ +..+...+|..+++|+.+.+.+ .+..+...+|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456666677776653 455555666667777777777653 6666666677776677777754 4555555667777777
Q ss_pred hhhhhccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCC
Q 007984 478 QELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLT 523 (582)
Q Consensus 478 ~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~ 523 (582)
+.+.+..++..+.. .+.++ .|+.+.+.+ .+..++ ..|.++++||
T Consensus 84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 77777444444444 34444 778777765 444443 3477777764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=8.6e-07 Score=79.07 Aligned_cols=215 Identities=20% Similarity=0.234 Sum_probs=140.2
Q ss_pred ccEEEcCCCCccchh--Hhhc-CCCCCcEEEcCCCCCcc---cchhhhCCCCCcEEecCCCcCccCChhh-hccCCccEE
Q 007984 47 LQKLILAHNNIEKLK--EDLR-NLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKF 119 (582)
Q Consensus 47 l~~L~l~~~~i~~~~--~~~~-~~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L 119 (582)
++.+.+.++.|.... +.|+ .+++++.+||.+|.++. +...+.++|.|+.|+++.|.+...-... ....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 446677777766443 3343 67889999999998884 4446688999999999988776332222 356688888
Q ss_pred EccCCcCC--cCCcccccCCCCCeEEcCCCcCCCC---cccccc-CCCCcEEEccCCccccc--chhhhcccccCcEEEc
Q 007984 120 DCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL---PEDLAD-CSKMSKLDVEGNKLTVL--SNNLIASWTMLTELIA 191 (582)
Q Consensus 120 ~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i---~~~l~~-~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l 191 (582)
-+.|+.+. .....+..+|.++.|.++.|++..+ .+..+. -+.++++....|....- ........+++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 88887755 4555667788888888888854421 111222 23566666666543311 0111334577888888
Q ss_pred cCCccCccc--hhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCcc-c----c--hhhhccCCCcEEEc
Q 007984 192 SKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSA-L----P--AELGKLSKLGTLDL 260 (582)
Q Consensus 192 ~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~-l----~--~~l~~~~~L~~L~l 260 (582)
..+.+.... .....++.+--|+++.+++...+ +.+.+++.|..|.+.++.+.+ + + -.++.+++++.|+=
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 888775443 34555677778888888888553 467888899999998888762 2 1 12467778887764
Q ss_pred c
Q 007984 261 H 261 (582)
Q Consensus 261 ~ 261 (582)
+
T Consensus 287 s 287 (418)
T KOG2982|consen 287 S 287 (418)
T ss_pred c
Confidence 4
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=2.5e-07 Score=72.53 Aligned_cols=85 Identities=27% Similarity=0.498 Sum_probs=42.7
Q ss_pred CccEEEcCCCCccchhHhhc-CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984 46 DLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~-~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 124 (582)
+|..+++++|.+..+|..|. .++..+.|+|.++.+..+|.-+..++.|+.|+++.|.+...|..+..+.++-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 44445555555555544332 33455555555555555555555555555555555555555554444555555555555
Q ss_pred cCCcCC
Q 007984 125 QLKELP 130 (582)
Q Consensus 125 ~~~~l~ 130 (582)
....++
T Consensus 134 a~~eid 139 (177)
T KOG4579|consen 134 ARAEID 139 (177)
T ss_pred ccccCc
Confidence 444443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=2.4e-05 Score=75.28 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=80.7
Q ss_pred cCCccEEEcCCCcCCcCCccccCCCCCCEEEcccC-cCCCCChHHhhCCCCCCEeeCCCC-CCccCCCccccCCCCCcEE
Q 007984 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQIL 456 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L 456 (582)
+.+++.|++++|.++.+|. + .++|++|.+++| .++.++.. + .++|++|++++| .+..++ .+|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP-------ESVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc-------cccceE
Confidence 4566666666666666652 1 234666666664 33333321 1 246677777666 333322 346666
Q ss_pred eCCCCcCCCCCCCCCCCC-ccchhhhhccccccCchhh--hccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCC
Q 007984 457 DLSYNIASLPENPPFSSL-PHLQELYLRMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533 (582)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~ 533 (582)
+++++.... +..+ ++|++|.+...-......+ .-.++|+.|++++|....+|..+. .+|+.|+++.+...
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~ 190 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKT 190 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccccc
Confidence 665543322 2222 3566666521100000000 122689999999988766665443 58999998876433
Q ss_pred --cCCCcccccccccceeeccCC
Q 007984 534 --ALPPELGLLEPSLQALRLDGN 554 (582)
Q Consensus 534 --~l~~~~~~~~~~L~~L~l~~~ 554 (582)
.++. ...++++ .|++.+|
T Consensus 191 sLeI~~--~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 191 TWNISF--EGFPDGL-DIDLQNS 210 (426)
T ss_pred cccCcc--ccccccc-Eechhhh
Confidence 2232 2222555 6676666
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=7e-06 Score=69.26 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=51.8
Q ss_pred CCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc--hhhcCCCCccEEeC
Q 007984 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDL 214 (582)
Q Consensus 137 ~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l 214 (582)
.....+++++|++..+ +.|..++.|.+|.++.|+|+.|++..-...++|..|.+.+|.+..+. .-+..|+.|+.|.+
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3555677777777666 45777788888888888888777764444556666666666554432 22344555555555
Q ss_pred CCCcCc
Q 007984 215 HQNRIL 220 (582)
Q Consensus 215 ~~~~~~ 220 (582)
-+|.++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555544
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=2.9e-07 Score=85.97 Aligned_cols=216 Identities=19% Similarity=0.137 Sum_probs=132.6
Q ss_pred hhhcccccccEEEecCCC-Cc--cCChhhhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccC-cCCCCChHHh
Q 007984 351 MATRLSVTSKELSLEGMN-LS--AIPSEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRN-KIKDWPDAIL 423 (582)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~-~~--~i~~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l 423 (582)
.....+.+++.++++.|. +. .+.....++..++.+.+.+|.-.. +-..-..++-+.++++.+| .+++.....+
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 344445556666665552 11 222333345567777777764322 2222356666777777776 5666554333
Q ss_pred -hCCCCCCEeeCCCCC-CccCCCccc-cCCCCCcEEeCCCCc-CCCCCCCCC-CCCccchhhhh-cc-cccc--Cchhhh
Q 007984 424 -TSLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNI-ASLPENPPF-SSLPHLQELYL-RM-QLRE--APTDIL 494 (582)
Q Consensus 424 -~~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l-~~-~~~~--~~~~~~ 494 (582)
..+..|+.|..+++. +++..-.++ .++++|+.+.+++|+ ++......+ .+++.|+.+++ .. .+.. +...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 458899999998865 333222222 578999999999985 444333333 36899999999 32 2222 222335
Q ss_pred ccCCCCEEecCCCcC-Cc-----cchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccCCC-CCcchHHHhcc
Q 007984 495 RLQQLRILDLSQNSL-QS-----IPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNP-LRSIRRTILDR 566 (582)
Q Consensus 495 ~~~~L~~L~l~~~~l-~~-----l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 566 (582)
+++.|+++.++.|.. +. +..+-..+..|+.+.+++|... +....-...|++|+.+++.+|. +.+-+...|.+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 799999999999843 32 2333456778999999999544 3323335667999999999996 44434444443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=2.7e-06 Score=88.94 Aligned_cols=147 Identities=30% Similarity=0.353 Sum_probs=90.3
Q ss_pred CCCCEEEcccCcC--CCCChHHhhCCCCCCEeeCCCCCCccCC-CccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchh
Q 007984 403 ASLQTLILSRNKI--KDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479 (582)
Q Consensus 403 ~~L~~L~l~~~~l--~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 479 (582)
.+|++|++++... .+++...-.-+|+|+.|.+++-.+..-. ...+.++++|..||+|+++++.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666666422 2233333344677777777665443211 12246677777777777777665 44677788888
Q ss_pred hhhcc-ccc--cCchhhhccCCCCEEecCCCcCCccc-------hhhcCCCCCCEEeCCCCcCCc--CCCcccccccccc
Q 007984 480 LYLRM-QLR--EAPTDILRLQQLRILDLSQNSLQSIP-------EGFKNLTSLTELDLSDNNISA--LPPELGLLEPSLQ 547 (582)
Q Consensus 480 L~l~~-~~~--~~~~~~~~~~~L~~L~l~~~~l~~l~-------~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~~L~ 547 (582)
|.+++ .+. .....++++++|+.||+|.......+ ++-..+|+|+.||.+|..+.. +...+.+. |+|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH-~~L~ 278 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH-PNLQ 278 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC-ccHh
Confidence 87733 222 22346788999999999987544221 234568999999999987762 22223344 6666
Q ss_pred eeecc
Q 007984 548 ALRLD 552 (582)
Q Consensus 548 ~L~l~ 552 (582)
.+-+.
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 66644
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=7.8e-06 Score=85.59 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=60.9
Q ss_pred CccEEEcCCCCcc--chhHhh-cCCCCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984 46 DLQKLILAHNNIE--KLKEDL-RNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 46 ~l~~L~l~~~~i~--~~~~~~-~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (582)
+|+.|+++|...- ..+..+ ..+|+|+.|.+.+-.+. +......++|+|.+||++++.++.+ .+++.+++|++|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 5555555554322 222222 24555555555554443 1122334455555555555555555 3455555555555
Q ss_pred ccCCcCCcCC--cccccCCCCCeEEcCCCcCCCCc-------cccccCCCCcEEEccCCccc
Q 007984 121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT 173 (582)
Q Consensus 121 l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~-------~~l~~~~~L~~L~l~~~~i~ 173 (582)
+.+-.+..-. ..+.++++|+.||++.......+ +.-..+|+|+.||.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5544443211 23445556666665554333211 12233566666666655544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=5e-05 Score=73.16 Aligned_cols=73 Identities=14% Similarity=0.282 Sum_probs=37.8
Q ss_pred hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCC-cCccCChhhhccCCccEEEccCC-cCCcCCcccccCCCCCe
Q 007984 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD 141 (582)
Q Consensus 64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 141 (582)
+..+.+++.|++++|.+..+|. --.+|++|.+++| .+..+|..+ .++|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3445666666666666665551 1234666666654 344444433 245666666665 3434432 3455
Q ss_pred EEcCCC
Q 007984 142 FKASNN 147 (582)
Q Consensus 142 L~l~~~ 147 (582)
|++..+
T Consensus 117 L~L~~n 122 (426)
T PRK15386 117 LEIKGS 122 (426)
T ss_pred EEeCCC
Confidence 555443
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=1.1e-05 Score=51.12 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=22.2
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l 83 (582)
+|++|+++++.|+.++..+.++++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666655566666666666666665544
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.9e-05 Score=65.59 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhh-ccCCccEEEccCCc
Q 007984 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQ 125 (582)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~ 125 (582)
=+++++.+..+..+...=........+||+++.+..+ ..|..++.|..|.+++|.|+.+...+. .+++|..|.+.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3555555555444332111233444555555555443 344455555555555555555433332 24445555555554
Q ss_pred CC
Q 007984 126 LK 127 (582)
Q Consensus 126 ~~ 127 (582)
+.
T Consensus 100 i~ 101 (233)
T KOG1644|consen 100 IQ 101 (233)
T ss_pred hh
Confidence 44
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=7.9e-05 Score=65.94 Aligned_cols=85 Identities=26% Similarity=0.293 Sum_probs=55.7
Q ss_pred CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCC--cCc-cCChhhhccCCccEEEccCCcCCcCC--cccccCCCCC
Q 007984 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLS 140 (582)
Q Consensus 66 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~ 140 (582)
.+..|+.+++.++.++++ ..|..+++|++|.++.| .+. .++.-...+++|+++++++|++..+. ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445666666667766654 45667888899999888 333 44444566788888888888877432 2344555666
Q ss_pred eEEcCCCcCCC
Q 007984 141 DFKASNNCITS 151 (582)
Q Consensus 141 ~L~l~~~~~~~ 151 (582)
+|++..|....
T Consensus 120 ~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 120 SLDLFNCSVTN 130 (260)
T ss_pred hhhcccCCccc
Confidence 66666665543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=1.7e-05 Score=70.36 Aligned_cols=82 Identities=24% Similarity=0.254 Sum_probs=64.1
Q ss_pred cCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCc-cccCCCCCcEEe
Q 007984 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILD 457 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~ 457 (582)
+.+.+.|+..+|.+++|.- ...++.|++|.|+-|+|+.+.+ +..|++|++|++..|.|.++... .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3467888999999988753 4678889999999999988765 78899999999999988876542 256777888888
Q ss_pred CCCCcC
Q 007984 458 LSYNIA 463 (582)
Q Consensus 458 l~~n~l 463 (582)
|..|.-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 877643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=2.1e-05 Score=69.82 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=41.3
Q ss_pred cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChh--hhccCCccEEEcc
Q 007984 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE--IGSATALVKFDCS 122 (582)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~l~ 122 (582)
.++++|++=||.+..| ....+|+.|++|.|+-|+|+++ +.+..|.+|+.|.|..|.|.++.+- +.++++|+.|++.
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3455555555555544 2344555555555555555554 4455555555555555555544322 3455555555555
Q ss_pred CCc
Q 007984 123 SNQ 125 (582)
Q Consensus 123 ~~~ 125 (582)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00038 Score=61.73 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC--Ccc-CCCccccCCCCCcEEeCCCCcCC
Q 007984 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP--LRQ-VPSDGFKDIPMLQILDLSYNIAS 464 (582)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~--l~~-~~~~~~~~~~~L~~L~l~~n~l~ 464 (582)
..|+.+++.+.+++.+.. +..+|+|++|.++.|. +.. +... ...+++|+++++++|++.
T Consensus 43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc
Confidence 334444444444433322 3344555555555552 211 1111 223355555555555444
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.00028 Score=73.01 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=9.9
Q ss_pred hcCCCCccEEeCCCCc
Q 007984 203 IGSLSRLIRLDLHQNR 218 (582)
Q Consensus 203 l~~~~~L~~L~l~~~~ 218 (582)
...++.++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4456666666666665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.85 E-value=0.00056 Score=70.72 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=122.7
Q ss_pred HHHHHhhcCceecCCCC-CCCcchHHHhhhccccCCCccccccCccEEEcCCC--Cccc----hhHhhcCCCCCcEEEcC
Q 007984 4 ILKAARTSGSLNLSNRS-LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN--NIEK----LKEDLRNLPLLTVLNVS 76 (582)
Q Consensus 4 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~i~~----~~~~~~~~~~L~~L~L~ 76 (582)
..+.++.++.+.+.+.. +.+-. +..... .+++|+.|+++++ .+.. .......+++|+.|+++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDS--LDALAL---------KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred HHhhCchhhHhhhcccccCChhh--HHHHHh---------hCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 44456788888888774 33322 111111 2789999999873 1221 12345567899999999
Q ss_pred CCC-Cccc-chhh-hCCCCCcEEecCCCc-Cc--cCChhhhccCCccEEEccCCcCC---cCCcccccCCCCCeEEcCCC
Q 007984 77 HNK-LSEL-PAAI-GELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN 147 (582)
Q Consensus 77 ~~~-~~~l-~~~~-~~~~~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~ 147 (582)
++. ++.. -..+ ..|++|++|.+..|. ++ .+......+++|++|++++|... .+.....++++++.+.+...
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 988 5532 2233 348999999988776 55 33344567889999999988754 12223445666666554443
Q ss_pred c----CC--------CCc------cccccCCCCcEEEccCCcccccc-hhhhcccccCcEEEccCCccCccchhhcCCCC
Q 007984 148 C----IT--------SLP------EDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETIGSLSR 208 (582)
Q Consensus 148 ~----~~--------~i~------~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 208 (582)
. +. ... -....+++++.+.+.++...+.. ...+.+|+.+. ..+.. .......
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~--------~~~~~~~ 402 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL--------RLCRSDS 402 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH--------HhccCCc
Confidence 2 11 100 11455666666666665544333 23344555552 11111 1112223
Q ss_pred ccEEeCCCCcCccCC--cCCcC-CCCCcEEEcCCCcCc
Q 007984 209 LIRLDLHQNRILSIP--SSISG-CCSLAEFYMGNNALS 243 (582)
Q Consensus 209 L~~L~l~~~~~~~~~--~~l~~-~~~L~~L~l~~~~i~ 243 (582)
++.|++.++...... ..... +..+..+.+.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 788888887644221 11111 566666666665433
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.76 E-value=0.0053 Score=29.64 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=4.1
Q ss_pred CCEEeCCCCcCCc
Q 007984 522 LTELDLSDNNISA 534 (582)
Q Consensus 522 L~~L~l~~n~l~~ 534 (582)
|++|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.74 E-value=0.0045 Score=32.36 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=8.7
Q ss_pred CCEEeCCCCcCCcCCCc
Q 007984 522 LTELDLSDNNISALPPE 538 (582)
Q Consensus 522 L~~L~l~~n~l~~l~~~ 538 (582)
|++|++++|+++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555554443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.10 E-value=0.015 Score=28.10 Aligned_cols=17 Identities=59% Similarity=0.870 Sum_probs=11.5
Q ss_pred CCCCEEecCCCcCCccc
Q 007984 497 QQLRILDLSQNSLQSIP 513 (582)
Q Consensus 497 ~~L~~L~l~~~~l~~l~ 513 (582)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.08 E-value=0.018 Score=31.51 Aligned_cols=21 Identities=52% Similarity=0.763 Sum_probs=9.9
Q ss_pred CCCCEEeCCCCcCCcCCCccc
Q 007984 520 TSLTELDLSDNNISALPPELG 540 (582)
Q Consensus 520 ~~L~~L~l~~n~l~~l~~~~~ 540 (582)
++|++|++++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 344455555555554444433
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.08 E-value=0.018 Score=31.51 Aligned_cols=21 Identities=52% Similarity=0.763 Sum_probs=9.9
Q ss_pred CCCCEEeCCCCcCCcCCCccc
Q 007984 520 TSLTELDLSDNNISALPPELG 540 (582)
Q Consensus 520 ~~L~~L~l~~n~l~~l~~~~~ 540 (582)
++|++|++++|+|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 344455555555554444433
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.015 Score=30.33 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=7.2
Q ss_pred ccEEEcCCCCccchhH
Q 007984 47 LQKLILAHNNIEKLKE 62 (582)
Q Consensus 47 l~~L~l~~~~i~~~~~ 62 (582)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.57 E-value=0.00078 Score=67.71 Aligned_cols=174 Identities=28% Similarity=0.342 Sum_probs=106.3
Q ss_pred ccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCC-CCCcEEecCCCcCc-----cCChhh
Q 007984 47 LQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGEL-HMLKSLDVSFNSIM-----KIPDEI 110 (582)
Q Consensus 47 l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~ 110 (582)
+..+.+.+|.+. .+-..+...+.|+.|+++++.+.. +...+... ..|++|++..|.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556666666554 233456667777777777776661 12233332 44666666666655 234455
Q ss_pred hccCCccEEEccCCcCC-----cCCcccc----cCCCCCeEEcCCCcCCC-----CccccccCCC-CcEEEccCCccccc
Q 007984 111 GSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTVL 175 (582)
Q Consensus 111 ~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----i~~~l~~~~~-L~~L~l~~~~i~~~ 175 (582)
.....++.++++.|.+. .++..+. ...++++|.+..|.++. +...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55667777777777653 1122222 46677788888877662 2233555555 66788888877654
Q ss_pred chh----hhccc-ccCcEEEccCCccCc-----cchhhcCCCCccEEeCCCCcCc
Q 007984 176 SNN----LIASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL 220 (582)
Q Consensus 176 ~~~----~~~~~-~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~ 220 (582)
... .+..+ ..++++++..|.+.. +...+..++.++.+.+..+.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 222 13333 567888888888854 3355677789999999998876
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.54 E-value=0.0011 Score=57.68 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=50.6
Q ss_pred hhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeE
Q 007984 63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (582)
Q Consensus 63 ~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 142 (582)
.+..+...+.||++.+.+..+...|+-+..|.-|+++.+.+..+|..+.....+.++....|..+..|.+++..+.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 34455555556665555554444555555555556666666556666666666666666666666666666666666666
Q ss_pred EcCCCcC
Q 007984 143 KASNNCI 149 (582)
Q Consensus 143 ~l~~~~~ 149 (582)
+..++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6665543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.45 E-value=0.00088 Score=67.36 Aligned_cols=180 Identities=24% Similarity=0.262 Sum_probs=119.1
Q ss_pred cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccc-----hhHhhcCC-CCCcEEEcCCCCCc---
Q 007984 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS--- 81 (582)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-----~~~~~~~~-~~L~~L~L~~~~~~--- 81 (582)
+.++++.++.++.-+...... .+.....|..|+++++.+.. +-..+... ..+++|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 677888888877443333222 22337788889999988772 22334443 56777888888777
Q ss_pred --ccchhhhCCCCCcEEecCCCcCc-----cCChhhh----ccCCccEEEccCCcCCc-----CCcccccCCC-CCeEEc
Q 007984 82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA 144 (582)
Q Consensus 82 --~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l 144 (582)
.+.+.+....+++.++++.|.+. .++..+. ...++++|++++|.++. +...+...++ +..+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 34556777888999999988764 1233333 46778899999888762 1223444455 667888
Q ss_pred CCCcCCCC-----ccccccC-CCCcEEEccCCcccccchh----hhcccccCcEEEccCCccCc
Q 007984 145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG 198 (582)
Q Consensus 145 ~~~~~~~i-----~~~l~~~-~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~ 198 (582)
..|.+.+. .+.+... .+++.+++..|.++..+.. .+..+..++.+.+..|.+..
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 88877633 3345555 6788999999988754433 34556788899999888754
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.10 E-value=0.041 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.8
Q ss_pred cccceeeccCCCCCcchHHHhc
Q 007984 544 PSLQALRLDGNPLRSIRRTILD 565 (582)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~~~ 565 (582)
++|+.|++++|.+..+++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6899999999999999999987
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.10 E-value=0.041 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.8
Q ss_pred cccceeeccCCCCCcchHHHhc
Q 007984 544 PSLQALRLDGNPLRSIRRTILD 565 (582)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~~~~ 565 (582)
++|+.|++++|.+..+++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 6899999999999999999987
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.95 E-value=0.0029 Score=55.01 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=59.4
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
....+.||++.+.+..+...|.-++.+..|+++.+.+..+|..+.....+..+++..|...+.|.++...+++++++..+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence 55677777777776666556666667777777777777777777777777777777777777777777777777777776
Q ss_pred CcCC
Q 007984 124 NQLK 127 (582)
Q Consensus 124 ~~~~ 127 (582)
+.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 6543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=0.032 Score=47.82 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=23.7
Q ss_pred cCCCCCCEEEcccC-cCCCCChHHhhC-CCCCCEeeCCCCC-CccCCCccccCCCCCcEEeCC
Q 007984 400 SSCASLQTLILSRN-KIKDWPDAILTS-LSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLS 459 (582)
Q Consensus 400 ~~~~~L~~L~l~~~-~l~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~ 459 (582)
..++.++.|.+.+| .+.++....+++ .++|+.|++++|+ |++-.-.++..+++|+.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34444444444444 233333322222 3445555555443 333222233334444444433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.64 E-value=0.15 Score=27.11 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=10.8
Q ss_pred ccccceeeccCCCCCcchHH
Q 007984 543 EPSLQALRLDGNPLRSIRRT 562 (582)
Q Consensus 543 ~~~L~~L~l~~~~~~~~~~~ 562 (582)
+++|++|+|++|++++....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 36777777777776654433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.95 E-value=0.3 Score=26.44 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=14.6
Q ss_pred CCCCEEeCCCCcCCcCCCc
Q 007984 520 TSLTELDLSDNNISALPPE 538 (582)
Q Consensus 520 ~~L~~L~l~~n~l~~l~~~ 538 (582)
++|++|++++|+++++|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4678888888888888763
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=0.13 Score=44.17 Aligned_cols=81 Identities=23% Similarity=0.168 Sum_probs=57.7
Q ss_pred ccccEEEecCCCCcc-CChhhhccCCccEEEcCCCc-CCc--CCccccCCCCCCEEEcccC-cCCCCChHHhhCCCCCCE
Q 007984 357 VTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSC 431 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~-i~~~~~~~~~L~~L~l~~~~-l~~--l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~ 431 (582)
..++.++-+++.+.. --+.+..++.++.+.+.+|. +.+ +...-+-.++|+.|++++| +|++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 345667777766552 22444557888888888884 333 1111135689999999998 899998888999999999
Q ss_pred eeCCCC
Q 007984 432 LKLDNN 437 (582)
Q Consensus 432 L~l~~~ 437 (582)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 999764
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.32 E-value=0.78 Score=45.92 Aligned_cols=80 Identities=26% Similarity=0.302 Sum_probs=54.7
Q ss_pred ccCCCCEEecCCCcCCccc---hhhcCCCCCCEEeCCCC--cCCcCCCcc-cccccccceeeccCCCCCcchHHHhccch
Q 007984 495 RLQQLRILDLSQNSLQSIP---EGFKNLTSLTELDLSDN--NISALPPEL-GLLEPSLQALRLDGNPLRSIRRTILDRGT 568 (582)
Q Consensus 495 ~~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~n--~l~~l~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 568 (582)
+.+.+..+++++|++..+. ..-+.-|.|++|+|++| .+...+... ..+ ..|++|-+.|||+.+ .|. ..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~----tf~-~~ 289 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT----TFS-DR 289 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc----chh-hh
Confidence 5677888889999777552 23456789999999999 555433322 444 789999999999864 222 23
Q ss_pred HHHHHHHHhcCC
Q 007984 569 KAVLKYLKDKIP 580 (582)
Q Consensus 569 ~~~~~~~~~~~~ 580 (582)
.+.+.++++.||
T Consensus 290 s~yv~~i~~~FP 301 (585)
T KOG3763|consen 290 SEYVSAIRELFP 301 (585)
T ss_pred HHHHHHHHHhcc
Confidence 344457777777
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.05 E-value=1.4 Score=24.04 Aligned_cols=16 Identities=56% Similarity=0.787 Sum_probs=10.1
Q ss_pred CCCCEEeCCCCcCCcC
Q 007984 520 TSLTELDLSDNNISAL 535 (582)
Q Consensus 520 ~~L~~L~l~~n~l~~l 535 (582)
++|++|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.01 E-value=1.5 Score=24.34 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=12.1
Q ss_pred cccceeeccCCCCCcchHH
Q 007984 544 PSLQALRLDGNPLRSIRRT 562 (582)
Q Consensus 544 ~~L~~L~l~~~~~~~~~~~ 562 (582)
++|++|+|++|.+.+-+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 5677777777776654443
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.59 E-value=1.9 Score=23.33 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=7.0
Q ss_pred cccceeeccCCC
Q 007984 544 PSLQALRLDGNP 555 (582)
Q Consensus 544 ~~L~~L~l~~~~ 555 (582)
++|+.|++++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 555666666654
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.64 E-value=8.6 Score=38.91 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCCCcEEecCCCcCccC---ChhhhccCCccEEEccCC--cCCcCCcccc--cCCCCCeEEcCCCcCC
Q 007984 89 ELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSN--QLKELPSSLG--RCLNLSDFKASNNCIT 150 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~--~~~~l~~~~~--~~~~L~~L~l~~~~~~ 150 (582)
+.+.+..++|++|.+.++ .......|+|+.|+|++| .+...+ ++. +...|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccc
Confidence 445566666666655533 222334566666666666 222111 111 2345666666676554
No 92
>PRK09718 hypothetical protein; Validated
Probab=31.76 E-value=97 Score=31.29 Aligned_cols=14 Identities=0% Similarity=-0.121 Sum_probs=6.2
Q ss_pred cccceeeccCCCCC
Q 007984 544 PSLQALRLDGNPLR 557 (582)
Q Consensus 544 ~~L~~L~l~~~~~~ 557 (582)
.+|+.+|++.|.+.
T Consensus 228 T~LkgVDFSdC~Le 241 (512)
T PRK09718 228 VRISTGNFKDCITE 241 (512)
T ss_pred CcCCCccccccccc
Confidence 44444444444433
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=29.57 E-value=3.2e+02 Score=27.71 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=18.0
Q ss_pred CCCCcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCccc
Q 007984 229 CCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 229 ~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~ 266 (582)
-+.+..|+++++.... +|........++.+..+.|...
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3445555555554432 2333444445555555555443
Done!