Query 007984
Match_columns 582
No_of_seqs 233 out of 2979
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 15:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 7.5E-50 2.6E-54 422.7 35.6 494 11-558 13-559 (606)
2 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-48 8E-53 416.8 46.4 528 12-565 7-605 (680)
3 3rgz_A Protein brassinosteroid 100.0 2.4E-49 8.1E-54 427.7 36.0 503 5-558 96-718 (768)
4 3rgz_A Protein brassinosteroid 100.0 7.2E-49 2.5E-53 423.9 38.2 536 7-567 75-703 (768)
5 3t6q_A CD180 antigen; protein- 100.0 3.3E-48 1.1E-52 410.1 41.9 497 11-558 14-561 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-47 1.9E-51 406.0 45.8 507 47-567 6-583 (680)
7 3t6q_A CD180 antigen; protein- 100.0 5E-46 1.7E-50 393.4 39.4 483 46-566 13-545 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-46 8.2E-51 395.8 29.9 477 9-534 32-559 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.1E-45 3.9E-50 388.2 29.7 492 11-558 9-532 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-44 9.6E-49 375.5 35.0 483 8-558 4-511 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-44 3.2E-48 387.9 36.4 485 12-558 7-561 (844)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-42 6.2E-47 359.0 28.9 447 12-558 3-482 (520)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-42 6.5E-47 363.7 28.7 474 9-534 28-532 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-40 4.5E-45 354.8 38.0 507 12-578 34-595 (635)
15 3j0a_A TOLL-like receptor 5; m 100.0 3E-41 1E-45 368.2 31.5 478 48-565 7-547 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-41 1.2E-45 352.1 28.2 467 44-566 4-495 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 1.3E-40 4.4E-45 356.1 32.5 438 45-555 323-862 (876)
18 4eco_A Uncharacterized protein 100.0 2.4E-41 8.1E-46 356.8 24.2 157 379-561 432-604 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-41 1.7E-45 348.3 25.5 424 9-534 21-482 (520)
20 4eco_A Uncharacterized protein 100.0 1.5E-40 5.2E-45 350.6 27.2 412 45-536 81-603 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 3.3E-40 1.1E-44 353.0 28.8 435 68-566 323-849 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-39 5E-44 339.8 28.6 449 44-558 30-511 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-38 5.6E-43 331.9 25.7 442 9-533 31-510 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 2.1E-37 7.2E-42 312.2 24.0 404 44-559 10-431 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 7E-36 2.4E-40 318.2 31.7 476 9-533 52-580 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 1.2E-35 4E-40 299.5 26.1 349 7-441 9-371 (454)
27 1o6v_A Internalin A; bacterial 100.0 2.4E-34 8.1E-39 293.0 34.8 346 44-466 45-390 (466)
28 1o6v_A Internalin A; bacterial 100.0 1.7E-34 5.8E-39 294.1 32.1 352 88-539 43-394 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 5.2E-34 1.8E-38 290.5 29.6 369 94-558 13-409 (455)
30 3v47_A TOLL-like receptor 5B a 100.0 2E-33 6.7E-38 286.3 31.5 380 47-534 12-409 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-33 7.1E-38 283.3 28.1 352 41-515 38-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.4E-33 2.5E-37 279.3 29.7 353 5-469 38-392 (457)
33 4fmz_A Internalin; leucine ric 100.0 5E-32 1.7E-36 265.4 32.5 305 66-464 42-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 8.6E-32 2.9E-36 263.8 30.9 306 41-440 40-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 2.1E-30 7.3E-35 257.9 27.6 307 135-558 43-353 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 5.3E-30 1.8E-34 262.3 29.6 314 116-510 13-333 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 3.4E-30 1.2E-34 256.4 26.4 304 68-464 45-352 (390)
38 2id5_A Lingo-1, leucine rich r 100.0 7.6E-30 2.6E-34 261.2 27.3 313 93-464 13-333 (477)
39 3oja_B Anopheles plasmodium-re 100.0 4.4E-29 1.5E-33 261.9 27.7 305 135-533 49-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 5.8E-29 2E-33 260.9 26.5 171 68-244 51-225 (597)
41 1xku_A Decorin; proteoglycan, 100.0 3.8E-28 1.3E-32 235.7 29.0 85 378-462 238-330 (330)
42 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-31 7.4E-36 271.8 3.8 381 91-562 3-445 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-28 1.1E-32 236.4 25.3 287 184-555 33-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 3.2E-28 1.1E-32 236.3 25.1 280 10-309 32-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-30 1.6E-34 261.9 11.8 248 9-268 3-299 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-28 1.2E-32 236.2 23.8 283 116-462 35-331 (332)
47 3ogk_B Coronatine-insensitive 99.9 1.7E-28 5.8E-33 258.6 8.0 434 48-554 53-548 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-25 9.9E-30 230.2 27.3 259 9-312 40-298 (622)
49 3ogk_B Coronatine-insensitive 99.9 9.2E-28 3.1E-32 253.1 5.8 414 72-563 54-532 (592)
50 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-25 2.5E-29 227.3 26.1 117 45-175 40-156 (622)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.8E-30 215.2 17.5 242 45-309 50-302 (313)
52 2z80_A TOLL-like receptor 2, v 99.9 1.7E-25 5.8E-30 219.2 18.4 266 9-311 31-314 (353)
53 1ogq_A PGIP-2, polygalacturona 99.9 8.8E-26 3E-30 216.6 15.8 241 9-264 50-302 (313)
54 4fcg_A Uncharacterized protein 99.9 3E-25 1E-29 214.2 19.0 223 44-267 80-315 (328)
55 2z80_A TOLL-like receptor 2, v 99.9 1.3E-25 4.5E-30 219.9 16.1 277 183-558 30-315 (353)
56 2z66_A Variable lymphocyte rec 99.9 4E-25 1.4E-29 212.1 19.0 240 12-266 10-261 (306)
57 2z66_A Variable lymphocyte rec 99.9 4.4E-25 1.5E-29 211.8 19.1 245 257-558 11-262 (306)
58 2p1m_B Transport inhibitor res 99.9 4.6E-27 1.6E-31 247.9 5.7 169 48-217 46-245 (594)
59 4fcg_A Uncharacterized protein 99.9 3.9E-25 1.3E-29 213.4 17.0 224 9-245 81-316 (328)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-25 3.1E-29 207.2 17.6 217 12-243 14-238 (285)
61 2p1m_B Transport inhibitor res 99.9 2.2E-26 7.6E-31 242.6 4.0 219 44-263 65-324 (594)
62 1ozn_A Reticulon 4 receptor; N 99.9 6E-24 2.1E-28 201.5 20.2 221 46-268 12-240 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 1.3E-23 4.5E-28 212.1 23.8 193 379-579 111-308 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 212.8 23.8 194 377-578 120-318 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.6E-28 212.0 22.0 238 12-266 46-292 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 1.6E-23 5.3E-28 212.3 22.1 238 12-266 57-303 (452)
67 1wwl_A Monocyte differentiatio 99.9 1.6E-24 5.4E-29 208.1 11.9 242 42-288 40-309 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-24 1.2E-28 206.2 14.3 215 44-266 33-250 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-24 1.1E-28 206.4 10.2 239 4-263 29-272 (317)
70 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 190.2 20.3 199 358-558 17-219 (270)
71 2z62_A TOLL-like receptor 4, v 99.9 2.5E-22 8.6E-27 189.4 20.1 217 12-243 10-237 (276)
72 1wwl_A Monocyte differentiatio 99.9 2.5E-24 8.4E-29 206.7 6.3 244 64-312 39-310 (312)
73 3oja_A Leucine-rich immune mol 99.9 1.2E-22 4.2E-27 206.6 16.6 235 15-266 13-250 (487)
74 3oja_A Leucine-rich immune mol 99.9 2.9E-22 9.8E-27 203.9 14.5 240 58-305 20-269 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 7.3E-22 2.5E-26 186.2 15.3 202 357-558 28-238 (276)
76 1p9a_G Platelet glycoprotein I 99.9 3.3E-21 1.1E-25 182.3 19.8 200 41-243 6-208 (290)
77 1h6u_A Internalin H; cell adhe 99.9 1.9E-21 6.5E-26 185.8 18.2 193 44-268 40-232 (308)
78 1p9a_G Platelet glycoprotein I 99.9 3E-21 1E-25 182.5 19.2 197 8-220 9-208 (290)
79 1h6u_A Internalin H; cell adhe 99.9 4E-21 1.4E-25 183.6 18.7 197 89-293 39-235 (308)
80 2o6q_A Variable lymphocyte rec 99.9 7.6E-21 2.6E-25 178.4 19.5 196 46-243 17-218 (270)
81 2xwt_C Thyrotropin receptor; s 99.9 4.6E-21 1.6E-25 176.5 13.6 192 69-263 32-236 (239)
82 3m19_A Variable lymphocyte rec 99.8 2.5E-20 8.6E-25 172.7 17.9 177 358-558 15-193 (251)
83 2xwt_C Thyrotropin receptor; s 99.8 6.3E-21 2.2E-25 175.5 12.4 193 44-240 30-236 (239)
84 2ca6_A RAN GTPase-activating p 99.8 2.5E-21 8.7E-26 191.9 9.5 226 44-269 31-319 (386)
85 3rfs_A Internalin B, repeat mo 99.8 6.6E-20 2.3E-24 172.1 18.1 178 378-558 39-219 (272)
86 3rfs_A Internalin B, repeat mo 99.8 4.6E-20 1.6E-24 173.1 15.4 193 357-558 41-236 (272)
87 2ca6_A RAN GTPase-activating p 99.8 4.5E-21 1.6E-25 190.1 8.5 222 46-267 10-288 (386)
88 2ast_B S-phase kinase-associat 99.8 2E-20 6.7E-25 182.1 11.7 243 46-291 48-309 (336)
89 3goz_A Leucine-rich repeat-con 99.8 2.5E-20 8.7E-25 182.8 11.4 243 14-268 3-299 (362)
90 3m19_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 164.6 17.9 158 356-535 34-194 (251)
91 4glp_A Monocyte differentiatio 99.8 1.8E-19 6.2E-24 172.7 13.4 196 91-288 91-307 (310)
92 4glp_A Monocyte differentiatio 99.8 2.2E-19 7.5E-24 172.1 11.8 221 44-267 63-308 (310)
93 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.1E-24 176.5 9.4 247 9-271 47-311 (336)
94 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.1E-23 163.2 16.8 171 67-245 45-215 (291)
95 3goz_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 174.8 11.0 250 49-312 2-298 (362)
96 1h6t_A Internalin B; cell adhe 99.8 3.6E-18 1.2E-22 161.5 17.3 187 74-269 30-216 (291)
97 4ay9_X Follicle-stimulating ho 99.8 3.5E-19 1.2E-23 173.6 10.5 210 358-569 10-227 (350)
98 3cvr_A Invasion plasmid antige 99.8 2.1E-18 7E-23 176.6 16.4 178 46-267 60-244 (571)
99 3cvr_A Invasion plasmid antige 99.8 3.4E-18 1.2E-22 175.0 17.6 184 92-296 60-252 (571)
100 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 152.5 17.9 152 382-557 21-172 (229)
101 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 166.5 14.4 233 12-263 12-256 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 1.9E-17 6.4E-22 149.6 17.2 151 383-557 14-165 (220)
103 2xot_A Amphoterin-induced prot 99.7 6.7E-18 2.3E-22 165.2 13.5 176 359-558 20-203 (361)
104 1m9s_A Internalin B; cell inva 99.7 2.3E-17 7.9E-22 170.9 17.0 171 44-222 42-212 (605)
105 2o6s_A Variable lymphocyte rec 99.7 1.2E-17 3.9E-22 150.1 12.6 169 358-557 8-178 (208)
106 4ezg_A Putative uncharacterize 99.7 1.5E-17 5E-22 147.8 12.9 154 377-558 41-195 (197)
107 4fs7_A Uncharacterized protein 99.7 1.1E-16 3.6E-21 158.8 20.4 331 80-502 59-393 (394)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 5.7E-17 2E-21 146.4 15.7 150 384-557 15-166 (220)
109 1m9s_A Internalin B; cell inva 99.7 5.8E-17 2E-21 167.9 17.7 192 46-246 22-213 (605)
110 1xeu_A Internalin C; cellular 99.7 8E-18 2.7E-22 156.5 9.9 165 46-219 20-184 (263)
111 2o6s_A Variable lymphocyte rec 99.7 3E-17 1E-21 147.4 13.0 152 383-558 10-162 (208)
112 1xeu_A Internalin C; cellular 99.7 5E-17 1.7E-21 151.1 14.4 171 8-200 18-188 (263)
113 4fs7_A Uncharacterized protein 99.7 2.7E-16 9.2E-21 155.9 20.0 323 63-480 66-393 (394)
114 4fdw_A Leucine rich hypothetic 99.7 1.6E-16 5.6E-21 156.4 17.3 183 372-560 195-386 (401)
115 2v9t_B SLIT homolog 2 protein 99.7 1.3E-16 4.5E-21 144.0 15.0 152 358-533 12-165 (220)
116 4ezg_A Putative uncharacterize 99.7 1.2E-16 4E-21 142.0 13.0 127 92-221 45-173 (197)
117 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-16 7E-21 142.8 14.8 153 357-533 11-166 (220)
118 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 141.7 16.6 154 356-534 18-173 (229)
119 2xot_A Amphoterin-induced prot 99.7 2.1E-16 7.1E-21 154.6 14.3 162 383-568 21-187 (361)
120 3sb4_A Hypothetical leucine ri 99.7 2.7E-16 9.3E-21 151.8 13.4 101 379-481 225-327 (329)
121 3sb4_A Hypothetical leucine ri 99.7 5E-17 1.7E-21 157.0 8.0 101 450-551 225-328 (329)
122 1dce_A Protein (RAB geranylger 99.7 2.8E-18 9.7E-23 176.7 -1.3 200 42-259 346-566 (567)
123 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.7E-20 150.5 16.3 202 358-567 158-368 (401)
124 1dce_A Protein (RAB geranylger 99.6 1.6E-17 5.6E-22 171.1 0.4 191 8-213 348-566 (567)
125 4gt6_A Cell surface protein; l 99.6 2.8E-14 9.5E-19 141.4 22.0 82 398-482 260-341 (394)
126 4gt6_A Cell surface protein; l 99.6 5.4E-14 1.8E-18 139.3 20.6 104 376-482 261-364 (394)
127 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7E-20 130.2 8.9 132 68-200 24-163 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 128.2 10.4 132 91-223 24-163 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-15 1.9E-19 128.5 8.3 135 38-173 12-153 (176)
130 4b8c_D Glucose-repressible alc 99.6 3.6E-15 1.2E-19 158.6 8.0 195 10-217 174-369 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 7.6E-15 2.6E-19 123.8 8.4 107 45-152 17-128 (149)
132 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.1E-19 122.0 9.5 125 66-191 15-147 (149)
133 2wfh_A SLIT homolog 2 protein 99.5 1.9E-13 6.6E-18 120.2 14.7 106 360-467 13-118 (193)
134 2wfh_A SLIT homolog 2 protein 99.5 8.6E-14 2.9E-18 122.5 12.3 125 383-510 13-139 (193)
135 1w8a_A SLIT protein; signaling 99.5 1.3E-13 4.4E-18 121.5 12.9 128 359-510 10-139 (192)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4.2E-14 1.4E-18 122.8 9.4 132 64-196 15-152 (176)
137 2o6r_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 116.2 16.1 81 383-465 10-90 (177)
138 2o6r_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 116.5 15.4 128 406-558 10-138 (177)
139 4h09_A Hypothetical leucine ri 99.5 1.7E-12 5.7E-17 128.0 21.1 105 399-505 236-341 (379)
140 4h09_A Hypothetical leucine ri 99.5 2.2E-12 7.5E-17 127.2 21.4 308 155-542 41-354 (379)
141 1w8a_A SLIT protein; signaling 99.5 1.3E-13 4.6E-18 121.4 10.7 109 357-465 29-140 (192)
142 4b8c_D Glucose-repressible alc 99.5 3.2E-13 1.1E-17 143.7 13.6 134 420-578 217-351 (727)
143 1ds9_A Outer arm dynein; leuci 99.4 9.4E-15 3.2E-19 129.7 -0.8 127 46-174 24-154 (198)
144 1ds9_A Outer arm dynein; leuci 99.4 1.7E-14 5.9E-19 128.0 -1.0 116 80-197 37-153 (198)
145 3g39_A Variable lymphocyte rec 99.3 1.2E-11 3.9E-16 106.4 11.3 106 357-464 9-115 (170)
146 2r9u_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 104.4 11.6 105 358-464 13-118 (174)
147 3g39_A Variable lymphocyte rec 99.3 5E-11 1.7E-15 102.4 12.7 106 381-510 10-115 (170)
148 2r9u_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 103.3 11.0 107 382-512 14-120 (174)
149 3un9_A NLR family member X1; l 99.2 5E-12 1.7E-16 123.2 4.7 155 44-198 71-253 (372)
150 3un9_A NLR family member X1; l 99.2 4.6E-13 1.6E-17 130.5 -3.4 155 379-533 71-252 (372)
151 2ifg_A High affinity nerve gro 98.9 3.2E-09 1.1E-13 103.1 11.1 105 359-465 10-117 (347)
152 2ifg_A High affinity nerve gro 98.9 3.2E-09 1.1E-13 103.1 8.9 98 383-482 11-110 (347)
153 2ra8_A Uncharacterized protein 98.7 1.9E-08 6.6E-13 96.9 8.7 152 109-264 167-341 (362)
154 1io0_A Tropomodulin; LRR prote 98.7 1E-08 3.6E-13 89.0 5.6 113 61-173 29-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.7 2.3E-08 7.9E-13 86.8 6.9 107 44-150 35-164 (185)
156 2ra8_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 95.4 7.3 137 129-267 164-321 (362)
157 3e4g_A ATP synthase subunit S, 98.2 2.3E-07 7.8E-12 78.1 1.1 92 371-462 52-150 (176)
158 3e4g_A ATP synthase subunit S, 98.0 1.6E-07 5.5E-12 79.1 -4.0 95 395-511 53-154 (176)
159 3rw6_A Nuclear RNA export fact 98.0 3.6E-06 1.2E-10 76.6 4.5 77 89-166 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.8 1.8E-05 6.1E-10 72.1 5.8 94 50-144 148-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 2.4E-05 8.2E-10 67.2 5.7 108 63-170 36-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 3.1E-05 1.1E-09 66.4 5.7 107 44-150 40-170 (197)
163 3rfe_A Platelet glycoprotein I 97.6 0.00016 5.5E-09 57.9 7.9 71 500-578 11-83 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0039 1.3E-07 49.8 6.4 54 384-439 12-67 (130)
165 2lz0_A Uncharacterized protein 92.3 0.12 4E-06 38.7 3.7 45 415-460 8-52 (100)
166 2lz0_A Uncharacterized protein 91.4 0.21 7.2E-06 37.3 4.3 46 436-482 5-50 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.5e-50 Score=422.68 Aligned_cols=494 Identities=20% Similarity=0.216 Sum_probs=417.0
Q ss_pred cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhh
Q 007984 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (582)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~ 88 (582)
..++++++..++.+|.++ .+++++|+++++.++.++. .|.++++|++|++++|.++.+ +.+|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI---------------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp TTEEECTTSCCSSCCTTS---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCceEccCCCcccCCCCC---------------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence 357999999999999876 4689999999999998865 899999999999999999977 56899
Q ss_pred CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCC--CCccccccCCCCcE
Q 007984 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK 164 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~i~~~l~~~~~L~~ 164 (582)
.+++|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+. .+|..++.+++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 999999999999999987 778999999999999999998776 67899999999999999998 47889999999999
Q ss_pred EEccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEc-
Q 007984 165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM- 237 (582)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l- 237 (582)
|++++|+++.+.+..++.+.+|+ ++++++|.+..++.......+|+.|++++|.+. ..+..+.++++++.+.+
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence 99999999998887788887765 899999999888766555569999999999875 33445555666655554
Q ss_pred --------------------------------CCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984 238 --------------------------------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (582)
Q Consensus 238 --------------------------------~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 285 (582)
..+.+......+..+++|++++++++.+..++......+++.+++++|
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n 317 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence 334444332337778899999999998888774444446999999999
Q ss_pred CCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEec
Q 007984 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (582)
Q Consensus 286 ~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (582)
.+..+| .+ .+++|++|++++|...... .......++.++++
T Consensus 318 ~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-------------------------------------~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 318 QLKQFP-TL-DLPFLKSLTLTMNKGSISF-------------------------------------KKVALPSLSYLDLS 358 (606)
T ss_dssp CCSSCC-CC-CCSSCCEEEEESCSSCEEC-------------------------------------CCCCCTTCCEEECC
T ss_pred cCcccc-cC-CCCccceeeccCCcCccch-------------------------------------hhccCCCCCEEECc
Confidence 887777 45 8899999999988532110 11123578999999
Q ss_pred CCCCccC---ChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCcc
Q 007984 366 GMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQ 441 (582)
Q Consensus 366 ~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~ 441 (582)
++.+..+ +..+..+++|++|++++|.+..+|..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+..
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 9988765 788888999999999999999998889999999999999999988765 568899999999999999999
Q ss_pred CCCccccCCCCCcEEeCCCCcCCC-CCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhc
Q 007984 442 VPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFK 517 (582)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~ 517 (582)
..+..+..+++|++|++++|.+++ ..+..+..+++|++|++ .+.+... +..+..+++|++|++++|+++.+ |..+.
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 888889999999999999999987 45778999999999999 6566554 55788999999999999999976 77899
Q ss_pred CCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 518 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 518 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
++++|++|++++|+++.+|..+....++|+.|++++|++..
T Consensus 519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 99999999999999999999865553479999999999864
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-48 Score=416.75 Aligned_cols=528 Identities=23% Similarity=0.308 Sum_probs=327.0
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~ 89 (582)
..+++++++++.+|.++ .+++++|+++++.++.++. .|.++++|++|++++|.+..+ +..+..
T Consensus 7 ~~~~cs~~~L~~ip~~~---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 71 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL---------------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71 (680)
T ss_dssp SEEECCSSCCSSCCSCS---------------CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred CeeECCCCCcccccccc---------------CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence 45777777777777655 2456666666666665543 466666666666666666544 445566
Q ss_pred CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEE
Q 007984 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 166 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~ 166 (582)
+++|++|++++|.+..++. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+++|++|+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 6666666666666665554 3556666666666666665554 3455666666666666655533 23355566666666
Q ss_pred ccCCcccccchhhhc--ccccCcEEEccCCccCccc-hhhcC---------------------------CCCccEEeCCC
Q 007984 167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGS---------------------------LSRLIRLDLHQ 216 (582)
Q Consensus 167 l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~---------------------------~~~L~~L~l~~ 216 (582)
+++|.++.+.+..+. .+++|++|++++|.+..++ ..+.. .++|+.|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 666665555444333 3355666666665554332 12211 24455555555
Q ss_pred CcCccC-CcCCcCCCC--CcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhh--cccccEEEccCCCCC--
Q 007984 217 NRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLS-- 288 (582)
Q Consensus 217 ~~~~~~-~~~l~~~~~--L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~-- 288 (582)
|.+... +..+..++. |++|++++|.+..+ +..++.+++|++|++++|.+.......+ ..+++.++++++...
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 555532 344544433 66666666666643 3445666666666666666655433221 223555655544222
Q ss_pred ----CCCc----cccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCcccc----ccchhhHHhhhhccc
Q 007984 289 ----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA----STTKEDLITMATRLS 356 (582)
Q Consensus 289 ----~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 356 (582)
.+|. .+..+++|++|++++|.+..+....+.... .+........ ...... .......
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~Ls~n~~~~~~l~~~--~f~~~~~ 380 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI---------NLKYLSLSNSFTSLRTLTNE--TFVSLAH 380 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT---------TCCEEECTTCBSCCCEECTT--TTGGGTT
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc---------CCcEEECCCCchhhhhcchh--hhccccc
Confidence 1221 344555566666655555444332222110 0000000000 000000 0000112
Q ss_pred ccccEEEecCCCCccC-ChhhhccCCccEEEcCCCcCCc-CC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984 357 VTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (582)
..++.+++.++.+..+ +..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|++.++....|..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 4678888888888765 4455668888999998888864 55 4678888888888888888887777788888888888
Q ss_pred CCCCCCcc--CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc---------hhhhccCCCCE
Q 007984 434 LDNNPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP---------TDILRLQQLRI 501 (582)
Q Consensus 434 l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~---------~~~~~~~~L~~ 501 (582)
+++|.+.. ..+..+..+++|+.|++++|.++.+.+.+|.++++|++|++ .+.+..++ ..+..+++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 88888763 33445788888888888888888888778888888888888 55554432 12677888888
Q ss_pred EecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhc
Q 007984 502 LDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 565 (582)
Q Consensus 502 L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 565 (582)
|++++|.++.+|. .|.++++|++|++++|+++++|+..+..+++|+.|++++|.+..+++.+|.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 8888888888875 478888888888888888888888877778888888888888888877665
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-49 Score=427.66 Aligned_cols=503 Identities=27% Similarity=0.332 Sum_probs=329.5
Q ss_pred HHHHhhcCceecCCCCCC-Ccch--HHHhhhccccCCCccccccCccEEEcCCCCccc-hhHhh-cCCCCCcEEEcCCCC
Q 007984 5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDL-RNLPLLTVLNVSHNK 79 (582)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~-~~~~~-~~~~~L~~L~L~~~~ 79 (582)
+...+.+++|+++++.+. .+|. .+ ..+++|++|++++|.+.. ++..+ .++++|++|++++|.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 345678999999999876 4554 33 226667777777766552 23322 566677777777776
Q ss_pred Cccc-chh---hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCC-CCcc
Q 007984 80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE 154 (582)
Q Consensus 80 ~~~l-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~i~~ 154 (582)
++.. +.. +..+++|++|++++|.+..... +..+++|++|++++|.+...+..+.++++|++|++++|.+. .++.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 6643 222 5566666666666666554322 25566666666666666543333666666666666666665 4455
Q ss_pred ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccC-ccchhhcCC-CCccEEeCCCCcCc-cCCcCCcCCCC
Q 007984 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS 231 (582)
Q Consensus 155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~l~~~~~ 231 (582)
.+..+++|++|++++|.+....+. ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 566666666666666665533332 15555666666666554 444444332 55666666665555 44555555556
Q ss_pred CcEEEcCCCcCc-ccchh-hhccCCCcEEEcccCccc-ccchhhhc--ccccEEEccCC---------------------
Q 007984 232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNN--------------------- 285 (582)
Q Consensus 232 L~~L~l~~~~i~-~l~~~-l~~~~~L~~L~l~~~~~~-~~~~~~~~--~~L~~l~l~~~--------------------- 285 (582)
|++|++++|.+. .+|.. +..+++|++|++++|.+. .++..... .+++.+++++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 666666655555 44443 555555555555555554 22222111 13455555544
Q ss_pred -----CCCC-CCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccc
Q 007984 286 -----SLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (582)
Q Consensus 286 -----~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (582)
.+.+ +|..+..+++|++|++++|.+.... .........+
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----------------------------------p~~l~~l~~L 444 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-----------------------------------PSSLGSLSKL 444 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC-----------------------------------CGGGGGCTTC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcc-----------------------------------cHHHhcCCCC
Confidence 4442 3444444555555555555443211 1112233578
Q ss_pred cEEEecCCCCc-cCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCC
Q 007984 360 KELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (582)
Q Consensus 360 ~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 437 (582)
+.+++.+|.+. .+|..+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..++.+++|++|++++|
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 89999999887 678888888999999999998884 7778889999999999999998777777889999999999999
Q ss_pred CCccCCCccccCCCCCcEEeCCCCcCCCCCC-------------------------------------------------
Q 007984 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPEN------------------------------------------------- 468 (582)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------------------------------------- 468 (582)
++.+..+..+..+++|+.|++++|.+++..+
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 9987666678899999999999987653322
Q ss_pred ---------------------CCCCCCccchhhhh-ccccc-cCchhhhccCCCCEEecCCCcCC-ccchhhcCCCCCCE
Q 007984 469 ---------------------PPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTE 524 (582)
Q Consensus 469 ---------------------~~~~~~~~L~~L~l-~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~ 524 (582)
..+..+++|+.|++ .+.+. .+|..++.+++|+.|++++|.++ .+|..+.++++|++
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 23445677888888 55554 67888999999999999999998 78888999999999
Q ss_pred EeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 525 LDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 525 L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
|+|++|++++..+..+..+++|++|++++|++..
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 9999999984444344445899999999998753
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.2e-49 Score=423.88 Aligned_cols=536 Identities=27% Similarity=0.285 Sum_probs=422.8
Q ss_pred HHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhH--hhcCCCCCcEEEcCCCCCc-c
Q 007984 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKE--DLRNLPLLTVLNVSHNKLS-E 82 (582)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~--~~~~~~~L~~L~L~~~~~~-~ 82 (582)
..++++.++++.+.+..+|.. |..+++|++|++++|.+. .+|. .+.++++|++|++++|.+. .
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 141 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSG-------------FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCC-------------CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC
T ss_pred ccCcccccCCcCCCcCCCchh-------------hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc
Confidence 345566666666654444433 344899999999999987 4676 8999999999999999887 3
Q ss_pred cchhh-hCCCCCcEEecCCCcCccC-Chh---hhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccc
Q 007984 83 LPAAI-GELHMLKSLDVSFNSIMKI-PDE---IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA 157 (582)
Q Consensus 83 l~~~~-~~~~~L~~L~l~~~~~~~l-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~ 157 (582)
++..+ ..+++|++|++++|.+... +.. +.++++|++|++++|.+.... .+..+++|++|++++|.+......++
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~ 220 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLG 220 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCBCT
T ss_pred CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCCcccc
Confidence 44444 7899999999999999854 333 678999999999999988543 34789999999999999986555599
Q ss_pred cCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc-cCCcCCcC-CCCCcEE
Q 007984 158 DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISG-CCSLAEF 235 (582)
Q Consensus 158 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~-~~~L~~L 235 (582)
.+++|++|++++|.++...+..+..+++|++|++++|.+....... .+++|++|++++|.+. .+|..+.. +++|++|
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 9999999999999999777777999999999999999886433223 7899999999999998 77877766 4999999
Q ss_pred EcCCCcCc-ccchhhhccCCCcEEEcccCccc-ccchh--hhcccccEEEccCCCCC-CCCccccCCC-CCCeEEccCCC
Q 007984 236 YMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVE--ACQLRLSVLDLSNNSLS-GLPPEIGKMT-TLRKLLLTGNP 309 (582)
Q Consensus 236 ~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~~--~~~~~L~~l~l~~~~l~-~~~~~l~~~~-~L~~L~l~~~~ 309 (582)
++++|.+. .+|..++.+++|++|++++|.+. .++.. ....+|+++++++|.+. .+|..+..++ +|++|++++|.
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 99999998 77889999999999999999997 56654 23345999999999988 4777788887 99999999998
Q ss_pred CccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChhhhccCCccEEEcC
Q 007984 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLS 388 (582)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~ 388 (582)
+.......+.... ...+........ ...............++.+++.+|.+. .+|..+..+++|++|+++
T Consensus 380 l~~~~~~~~~~~~-------~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 380 FSGPILPNLCQNP-------KNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp EEEECCTTTTCST-------TCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cCCCcChhhhhcc-------cCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 7542211111000 000000000000 000011222334567899999999887 677888889999999999
Q ss_pred CCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCC
Q 007984 389 RNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467 (582)
Q Consensus 389 ~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 467 (582)
+|.+.. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.++..+++|++|++++|.+++..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 999884 7888899999999999999999877777899999999999999999777777999999999999999998888
Q ss_pred CCCCCCCccchhhhh-ccccc-cCch------------------------------------------------------
Q 007984 468 NPPFSSLPHLQELYL-RMQLR-EAPT------------------------------------------------------ 491 (582)
Q Consensus 468 ~~~~~~~~~L~~L~l-~~~~~-~~~~------------------------------------------------------ 491 (582)
+..+..+++|++|++ .+.+. .+|.
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 888999999999999 44332 2332
Q ss_pred ----------------hhhccCCCCEEecCCCcCC-ccchhhcCCCCCCEEeCCCCcCC-cCCCcccccccccceeeccC
Q 007984 492 ----------------DILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDG 553 (582)
Q Consensus 492 ----------------~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~L~~L~l~~ 553 (582)
.+..+++|+.||+++|+++ .+|..+.+++.|++|++++|+++ .+|..+.. +++|++||+++
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~-L~~L~~LdLs~ 689 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSS 689 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC-CCCCCEEECCC
Confidence 2334678999999999998 77889999999999999999999 55555544 59999999999
Q ss_pred CCCCcchHHHhccc
Q 007984 554 NPLRSIRRTILDRG 567 (582)
Q Consensus 554 ~~~~~~~~~~~~~~ 567 (582)
|++....+..|...
T Consensus 690 N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 690 NKLDGRIPQAMSAL 703 (768)
T ss_dssp SCCEECCCGGGGGC
T ss_pred CcccCcCChHHhCC
Confidence 99986666666543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.3e-48 Score=410.08 Aligned_cols=497 Identities=22% Similarity=0.279 Sum_probs=408.4
Q ss_pred cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCccc-chhhh
Q 007984 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG 88 (582)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l-~~~~~ 88 (582)
-+.+++++..++.+|..+ ..++++|+++++.++.+ +..|.++++|++|++++|.+..+ |..|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL---------------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTS---------------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred CceEECCCCCcccCcCCC---------------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence 457899999999999877 45799999999999988 56899999999999999999866 67899
Q ss_pred CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEE
Q 007984 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL 165 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L 165 (582)
.+++|++|++++|.+..+ |..+.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 999999999999999865 67799999999999999999977 567889999999999999998763 345559999999
Q ss_pred EccCCcccccchhhhcccccCc--EEEccCCccCccchhhcCCCCccEEeCCCCcCc-----------------------
Q 007984 166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----------------------- 220 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----------------------- 220 (582)
++++|+++.+.+..++.+++|+ .+++++|.+..++........|+.|+++++...
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 9999999999888899999999 899999999877655555578888888877411
Q ss_pred ---cC-CcCCcCCC--CCcEEEcCCCcCcccch-hhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCCCC-C
Q 007984 221 ---SI-PSSISGCC--SLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-P 291 (582)
Q Consensus 221 ---~~-~~~l~~~~--~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~~~-~ 291 (582)
.+ +..+..+. +|+.|++++|.+..++. .++.+++|++|++++|.++.++..... .+|+++++++|.+..+ +
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence 00 01112221 68889999998887654 478889999999999988877765433 3489999999988875 4
Q ss_pred ccccCCCCCCeEEccCCCCc-cccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984 292 PEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (582)
Q Consensus 292 ~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (582)
..+..+++|++|++++|.+. .++...+ .....++.+++.++.+.
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------------------~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCL-----------------------------------ENLENLRELDLSHDDIE 363 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTT-----------------------------------TTCTTCCEEECCSSCCC
T ss_pred hhhhccCcCCEEECCCCCcccccchhhh-----------------------------------hccCcCCEEECCCCccc
Confidence 46888899999999988764 2221111 12356788999988887
Q ss_pred cC---ChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCccCCCc
Q 007984 371 AI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSD 445 (582)
Q Consensus 371 ~i---~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~ 445 (582)
.+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+++... ..+..+++|++|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 55 55677789999999999998875 5578889999999999998877543 3478899999999999999988887
Q ss_pred cccCCCCCcEEeCCCCcCCCC---CCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhcCC
Q 007984 446 GFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNL 519 (582)
Q Consensus 446 ~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l 519 (582)
.+..+++|++|++++|.+.+. ....+..+++|++|++ .+.+..+ +..+..+++|+.|++++|+++.+ |..+.++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 889999999999999988752 3356888999999999 5566655 56788999999999999999865 6779999
Q ss_pred CCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 520 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 520 ~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
+.| +|++++|+++++++..+..+++|+.|++++|++..
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 999 99999999999988877777999999999999863
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-47 Score=406.04 Aligned_cols=507 Identities=23% Similarity=0.286 Sum_probs=387.2
Q ss_pred ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCC
Q 007984 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN 124 (582)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 124 (582)
-+.++.+++.++.+|..+. +++++|+++++.++.++. .|..+++|++|++++|.+..+ +..+.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3679999999999987665 799999999999998765 699999999999999999976 667899999999999999
Q ss_pred cCCcCCc-ccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch-
Q 007984 125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 201 (582)
Q Consensus 125 ~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 201 (582)
.+..+|. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+....++.+++|++|++++|.+..++.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 9998886 5899999999999999999876 569999999999999999998888778999999999999999987654
Q ss_pred hh--cCCCCccEEeCCCCcCccCC-cCCcCC---------------------------CCCcEEEcCCCcCccc-chhhh
Q 007984 202 TI--GSLSRLIRLDLHQNRILSIP-SSISGC---------------------------CSLAEFYMGNNALSAL-PAELG 250 (582)
Q Consensus 202 ~l--~~~~~L~~L~l~~~~~~~~~-~~l~~~---------------------------~~L~~L~l~~~~i~~l-~~~l~ 250 (582)
.+ ..+++|+.|++++|.+..++ ..+..+ ++|+.|++++|.+... +.++.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 33 35689999999999887553 333332 5678888888888744 56677
Q ss_pred ccC--CCcEEEcccCcccccchhhh--cccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCcc---------cccc
Q 007984 251 KLS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT---------LRSS 316 (582)
Q Consensus 251 ~~~--~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~---------~~~~ 316 (582)
.++ +|++|++++|.+..+....+ ..+|+++++++|.+..+ +..+.++++|++++++++.... +...
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 665 49999999999988765433 34599999999998884 5578999999999999864321 1111
Q ss_pred ccCCCcHHHHHHHHhcCCCCCcccc-ccchhhHHhhhhcccccccEEEecCCCC--ccCChhhhc---cCCccEEEcCCC
Q 007984 317 LVNGPTPALLKYLRSRLPENEDSEA-STTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWE---AGEITKLDLSRN 390 (582)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~--~~i~~~~~~---~~~L~~L~l~~~ 390 (582)
.+.. +........ .................++.++++++.+ ..++...+. .++|+.|++++|
T Consensus 324 ~~~~------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 324 SFQW------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp TTTT------------CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred hccc------------CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 1100 000000000 0000001111122234566666665542 233322221 246777777777
Q ss_pred cCCcC-CccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC--CC
Q 007984 391 SIQEL-PPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LP 466 (582)
Q Consensus 391 ~l~~l-~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~ 466 (582)
.++.+ +..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+..+....|..+++|+.|++++|.+. +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 77664 4467788888888888888764 55566788888888888888888887777888888888888888776 34
Q ss_pred CCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCCccch---------hhcCCCCCCEEeCCCCcCCcC
Q 007984 467 ENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISAL 535 (582)
Q Consensus 467 ~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~---------~~~~l~~L~~L~l~~n~l~~l 535 (582)
.+..+..+++|++|++ .+.+..++. .+..+++|+.|++++|.++.++. .+.++++|++|++++|+++.+
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 5667888999999999 666666655 47889999999999998886532 278899999999999999999
Q ss_pred CCcccccccccceeeccCCCCCcchHHHhccc
Q 007984 536 PPELGLLEPSLQALRLDGNPLRSIRRTILDRG 567 (582)
Q Consensus 536 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 567 (582)
|...+..+++|++|++++|.+..+++.+|...
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 99888888999999999999999999888654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-46 Score=393.39 Aligned_cols=483 Identities=22% Similarity=0.258 Sum_probs=405.8
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccC
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 123 (582)
.-+.++.++..++.+|..+.. ++++|+++++.++.+ +..|..+++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 356889999999999887754 899999999999977 56899999999999999999866 67799999999999999
Q ss_pred CcCCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc-c
Q 007984 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P 200 (582)
Q Consensus 124 ~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~ 200 (582)
|.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 999865 66889999999999999999987 56799999999999999999987655577799999999999999876 5
Q ss_pred hhhcCCCCcc--EEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc--------------------------cc-chhhhc
Q 007984 201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGK 251 (582)
Q Consensus 201 ~~l~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~--------------------------~l-~~~l~~ 251 (582)
..+..+++|+ .|++++|.+..++........|+.|+++++... .+ +..+..
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 6788899999 999999999977665556678999999887511 00 111222
Q ss_pred cC--CCcEEEcccCcccccchhhh--cccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHH
Q 007984 252 LS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (582)
Q Consensus 252 ~~--~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (582)
+. +|+++++++|.+..++...+ ..+|+++++++|.+..+|..+.++++|++|++++|.+..+....+
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--------- 321 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA--------- 321 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG---------
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh---------
Confidence 21 78899999999888776533 345999999999999998888999999999999998865432211
Q ss_pred HHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc-cCChh-hhccCCccEEEcCCCcCCcC---CccccCC
Q 007984 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQEL---PPELSSC 402 (582)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~-~~~~~~L~~L~l~~~~l~~l---~~~l~~~ 402 (582)
.....++.+++.++.+. .++.. +..+++|++|++++|.+..+ +..+..+
T Consensus 322 --------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 322 --------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp --------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred --------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 22357899999999876 56554 66799999999999999875 5578999
Q ss_pred CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCC-ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhh
Q 007984 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481 (582)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 481 (582)
++|++|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 999999999999998888889999999999999999987644 4488999999999999999998888999999999999
Q ss_pred h-cccccc----CchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCC
Q 007984 482 L-RMQLRE----APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555 (582)
Q Consensus 482 l-~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~ 555 (582)
+ .+.+.. .+..+..+++|+.|++++|.++.+ |..+.++++|++|++++|+++++++..+..+++| .|++++|.
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 9 555443 235688999999999999999977 5779999999999999999998877777777999 99999999
Q ss_pred CCcchHHHhcc
Q 007984 556 LRSIRRTILDR 566 (582)
Q Consensus 556 ~~~~~~~~~~~ 566 (582)
+..+++..|..
T Consensus 535 l~~~~~~~~~~ 545 (606)
T 3t6q_A 535 ISIILPSLLPI 545 (606)
T ss_dssp CCCCCGGGHHH
T ss_pred ccccCHhhccc
Confidence 99998876653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-46 Score=395.83 Aligned_cols=477 Identities=21% Similarity=0.221 Sum_probs=401.8
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCccc-chh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l-~~~ 86 (582)
+.+++|+++++.++.++...+.. +++|++|++++|.++.+ +..|.++++|++|++++|.++.+ |..
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 57899999999999888755443 88999999999999987 56899999999999999999977 778
Q ss_pred hhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCC--cCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCC
Q 007984 87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L 162 (582)
|..+++|++|++++|.+..++ ..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+..++ ..++.+.+|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 999999999999999999876 66899999999999999998 47889999999999999999988653 345555544
Q ss_pred ----cEEEccCCcccccchhhhcccccCcEEEccCCccC--ccchhhcCCCCccEEeC----------------------
Q 007984 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL---------------------- 214 (582)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l---------------------- 214 (582)
.+|++++|.++.++...+... +|+++++++|.+. ..+..+..++.|+.+++
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 489999999999988877666 8999999999774 34556667777666655
Q ss_pred -----------CCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEcc
Q 007984 215 -----------HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (582)
Q Consensus 215 -----------~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 283 (582)
..+.+......+..+++|+.|+++++.+..++ .+..+++|++|++++|.+..++.. ...+++.++++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~ 336 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLT 336 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeecc
Confidence 33344433233788899999999999999888 888899999999999999888754 55569999999
Q ss_pred CCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEE
Q 007984 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (582)
Q Consensus 284 ~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (582)
+|..... ..+..+++|++|++++|.++..... .........++.++
T Consensus 337 ~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 337 MNKGSIS-FKKVALPSLSYLDLSRNALSFSGCC---------------------------------SYSDLGTNSLRHLD 382 (606)
T ss_dssp SCSSCEE-CCCCCCTTCCEEECCSSCEEEEEEC---------------------------------CHHHHCCSCCCEEE
T ss_pred CCcCccc-hhhccCCCCCEEECcCCccCCCcch---------------------------------hhhhccCCcccEeE
Confidence 9954432 2567899999999999987644200 01122346789999
Q ss_pred ecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCcc
Q 007984 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (582)
Q Consensus 364 l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 441 (582)
+.++.+..++..+..+++|++|++++|.+..++. .+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus 383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 9999999999888889999999999999887643 78899999999999999998887889999999999999999987
Q ss_pred -CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccchhhcC
Q 007984 442 -VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKN 518 (582)
Q Consensus 442 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~ 518 (582)
+.+..+..+++|++|++++|.+++..+..+..+++|++|++ .+.+... +..+..+++|++|++++|+++.+|..+..
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~ 542 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence 45566899999999999999999998889999999999999 6666655 67889999999999999999999988989
Q ss_pred CC-CCCEEeCCCCcCCc
Q 007984 519 LT-SLTELDLSDNNISA 534 (582)
Q Consensus 519 l~-~L~~L~l~~n~l~~ 534 (582)
++ +|++|++++|.+..
T Consensus 543 l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCTTCCEEECCSCCCCC
T ss_pred hcccCcEEEccCCCccc
Confidence 87 59999999998873
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=388.18 Aligned_cols=492 Identities=22% Similarity=0.266 Sum_probs=371.9
Q ss_pred cCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hhhh
Q 007984 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG 88 (582)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~~~ 88 (582)
...+++++..++.+|..+ .+++++|+++++.++.++ ..|..+++|++|++++|.++.++ ..|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l---------------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~ 73 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (570)
T ss_dssp TTEEECCSSCCSSCCSSS---------------CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred CcEEEeCCCCccccCCCc---------------cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence 356899999999999866 457999999999999875 47999999999999999999774 5789
Q ss_pred CCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcE
Q 007984 89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK 164 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~ 164 (582)
.+++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+.++++|++|++++|.+.. +|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 9999999999999998775 678999999999999999998865 68899999999999999885 6888999999999
Q ss_pred EEccCCcccccchhhhcccccC----cEEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEEEcC
Q 007984 165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMG 238 (582)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~ 238 (582)
|++++|+++.+.+..++.+++| +++++++|.+..++.......+|+.|+++++... .++..+..+++++...+.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence 9999999999888888999888 8999999999876543333448999999987433 233344455555544433
Q ss_pred CCcC------cccc-hhhhccC--CCcEEEcccC-cccccchh--hhcccccEEEccCCCCCCCCccccCCCCCCeEEcc
Q 007984 239 NNAL------SALP-AELGKLS--KLGTLDLHSN-QLKEYCVE--ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306 (582)
Q Consensus 239 ~~~i------~~l~-~~l~~~~--~L~~L~l~~~-~~~~~~~~--~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~ 306 (582)
...+ ..++ ..+..++ .++.+++.++ .+...... ....+++.++++++.+..++..+..+ +|++|+++
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence 2111 1111 1122222 2344444443 22221111 11234666666666666666666666 67777777
Q ss_pred CCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEE
Q 007984 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386 (582)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~ 386 (582)
+|.+..++.. ....++.+++.++.+...... ..+++|++|+
T Consensus 313 ~n~~~~l~~~--------------------------------------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 313 NCKFGQFPTL--------------------------------------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp SCBCSSCCBC--------------------------------------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred cCcccccCcc--------------------------------------cccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 6665433211 123456666666655433222 5578888888
Q ss_pred cCCCcCCcC---CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCC-ccccCCCCCcEEeCCCCc
Q 007984 387 LSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 387 l~~~~l~~l---~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~ 462 (582)
+++|.++.+ +..+..+++|++|++++|.+.+++.. +..+++|++|++++|.+..... ..+..+++|++|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 888887764 45677888888888888888776655 7788888888888888877644 457788888888888888
Q ss_pred CCCCCCCCCCCCccchhhhh-ccccc--cCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984 463 ASLPENPPFSSLPHLQELYL-RMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE 538 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l-~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~ 538 (582)
+.+..+..+.++++|++|++ .+.+. .++..+..+++|++|++++|+++.+ |..+.++++|++|++++|+++++++.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 88777778888888888888 44443 4677788999999999999999977 77899999999999999999999988
Q ss_pred ccccccccceeeccCCCCCc
Q 007984 539 LGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 539 ~~~~~~~L~~L~l~~~~~~~ 558 (582)
.+..+++|+.|++++|++..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 77778999999999999864
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-44 Score=375.53 Aligned_cols=483 Identities=19% Similarity=0.247 Sum_probs=390.4
Q ss_pred HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-h
Q 007984 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-A 85 (582)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-~ 85 (582)
|+...+.|++++.++.+|..+ .+++++|+++++.++.+ +..|..+++|++|++++|.+..++ .
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~---------------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGL---------------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCC---------------CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred CCCCceEECCCCccccccccC---------------CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 445667899999999999876 35799999999999977 468999999999999999999775 5
Q ss_pred hhhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCc-CCCCc-cccccCC
Q 007984 86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCS 160 (582)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~-~~~i~-~~l~~~~ 160 (582)
+|..+++|++|++++|.+..++.. +..+++|++|++++|.+.. .+..+.++++|++|++++|. +..++ ..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 899999999999999999988765 8999999999999999984 46688999999999999998 56665 4689999
Q ss_pred CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh-cCCCCccEEeCCCCcCccCC----cCCcCCCCCcEE
Q 007984 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEF 235 (582)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L 235 (582)
+|++|++++|+++...+..++.+++|++|+++++.+..++..+ ..+++|+.|++++|.+...+ .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999999999887777999999999999999988777654 56899999999999988642 223557889999
Q ss_pred EcCCCcCc-----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCC
Q 007984 236 YMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310 (582)
Q Consensus 236 ~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~ 310 (582)
+++++.+. .++..+..+++|+.+++++|.+..+..... .....+..+++++.+.+.++.+
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~i 293 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------SESDVVSELGKVETVTIRRLHI 293 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------CTTTCCCCCTTCCEEEEESCBC
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------cchhhhhhhccccccccccccc
Confidence 99998876 233445667888888888887655322100 0112345677788888887765
Q ss_pred ccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhh-ccCCccEEEcCC
Q 007984 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSR 389 (582)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~ 389 (582)
..... + ... .........++.+++.++.+..+|..++ .+++|++|++++
T Consensus 294 ~~~~~--~-~~l---------------------------~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 294 PQFYL--F-YDL---------------------------STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp SCGGG--S-CCC---------------------------CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred chhhh--c-ccc---------------------------hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 33210 0 000 0011123467899999999999998885 599999999999
Q ss_pred CcCCc-CC---ccccCCCCCCEEEcccCcCCCCCh--HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcC
Q 007984 390 NSIQE-LP---PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (582)
Q Consensus 390 ~~l~~-l~---~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l 463 (582)
|.+.. ++ ..++.+++|++|++++|.+++++. ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCc
Confidence 99886 32 347889999999999999998754 5688999999999999999988764 78899999999999998
Q ss_pred CCCCCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCccccc
Q 007984 464 SLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL 542 (582)
Q Consensus 464 ~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 542 (582)
+.+.... .++|++|++ .+.+...+ ..+++|++|++++|+++.+|. ...+++|++|++++|+++++++..+..
T Consensus 423 ~~l~~~~---~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 423 RVVKTCI---PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp SCCCTTS---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred ccccchh---cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhc
Confidence 8765432 368999999 55555543 578999999999999999986 467999999999999999999887777
Q ss_pred ccccceeeccCCCCCc
Q 007984 543 EPSLQALRLDGNPLRS 558 (582)
Q Consensus 543 ~~~L~~L~l~~~~~~~ 558 (582)
+++|+.|++++|++..
T Consensus 496 l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CcccCEEEecCCCccC
Confidence 7999999999999753
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-44 Score=387.88 Aligned_cols=485 Identities=23% Similarity=0.266 Sum_probs=395.0
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCC-ccc-chhhh
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKL-SEL-PAAIG 88 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~-~~l-~~~~~ 88 (582)
+..+++++.++.+|. + .+++++|++++|.++.+ +..|..+++|++|++++|.. ..+ +.+|.
T Consensus 7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~ 70 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70 (844)
T ss_dssp EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence 478999999999998 4 57899999999999977 56899999999999999954 456 67899
Q ss_pred CCCCCcEEecCCCcCccC-ChhhhccCCccEEEccCCcCCc-CCcc--cccCCCCCeEEcCCCcCCCCc--cccccCCCC
Q 007984 89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM 162 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L 162 (582)
++++|++|+|++|.+..+ |..+.++++|++|++++|.+.. ++.. +.++++|++|++++|.+..++ ..++.+++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 999999999999999866 7789999999999999999885 4443 889999999999999998653 568999999
Q ss_pred cEEEccCCcccccchhhhccc--ccCcEEEccCCccCc-cchhhcCCCC------ccEEeCCCCcCcc-CCcC-------
Q 007984 163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS------- 225 (582)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-~~~~------- 225 (582)
++|++++|.++.+....+..+ ++|+.|++++|.+.. .+..+..+++ |+.|++++|.+.. .+..
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 999999999988877778777 899999999998854 3444444443 9999999986541 1111
Q ss_pred -----------------------------CcC--CCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhh
Q 007984 226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (582)
Q Consensus 226 -----------------------------l~~--~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 273 (582)
+.. +++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 111 36899999999998855 5678889999999999999987765433
Q ss_pred --cccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHh
Q 007984 274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (582)
Q Consensus 274 --~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (582)
..+|++|++++|.+..+ +..+..+++|++|++++|.+..+....+.
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~------------------------------- 359 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK------------------------------- 359 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC-------------------------------
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc-------------------------------
Confidence 34599999999998885 55688999999999999988766543332
Q ss_pred hhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChH-HhhCCCCC
Q 007984 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSL 429 (582)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L 429 (582)
....++.+++++|.+..++. +++|+++++++|.++.+|.. ..+++.|++++|.++++... .+..+++|
T Consensus 360 ----~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 360 ----FLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp ----SCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred ----CCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 23578999999999887665 78899999999999988754 46799999999999887543 45689999
Q ss_pred CEeeCCCCCCccCCCc-cccCCCCCcEEeCCCCcCCC-----CCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCE
Q 007984 430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRI 501 (582)
Q Consensus 430 ~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~ 501 (582)
+.|++++|.++.+... .+..+++|+.|++++|.++. ..+..|.++++|+.|++ .+.+..++. .+..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 9999999999876543 35678999999999998873 33456889999999999 666666655 4788999999
Q ss_pred EecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 502 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
|++++|+++.+|..... ++|++|++++|+++++++..+ ++|+.+++++|++..
T Consensus 509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 99999999988754323 899999999999998877543 589999999998753
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=359.04 Aligned_cols=447 Identities=21% Similarity=0.247 Sum_probs=288.3
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~~~~ 89 (582)
+++|++++.++.+|..+ .+++++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|..
T Consensus 3 ~~l~ls~n~l~~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67 (520)
T ss_dssp CEEECTTSCCSSCCCSC---------------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred ceEecCCCCcccccccc---------------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence 46777777777777654 246777777777776554 4667777777777777777655 456666
Q ss_pred CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCccccccCCCC--cEE
Q 007984 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L--~~L 165 (582)
+++|++|++++|.+..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence 77777777777766666544 56666666666666653 34455556666666665555543 234444444 555
Q ss_pred EccCCcc--cccchhhhcccccCcEEEccCCccCccchhhcCCC-CccEEeCCCCcCcc-C-CcCCcCCCCCcEEEcCCC
Q 007984 166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS-RLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 166 ~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~ 240 (582)
++++|.+ ... .+..+..+. ....+++++|.+.. + ...+..+++|+.+++++|
T Consensus 144 ~l~~n~l~~~~~-----------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 144 LLVLGETYGEKE-----------------------DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEEECTTTTSSC-----------------------CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred Eeeccccccccc-----------------------ccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 5555544 222 222332222 12234555554432 1 234555666666666666
Q ss_pred c-------CcccchhhhccCCCcEEEcccCcccccch-----hhhcccccEEEccCCCCC-CCCccc-----cCCCCCCe
Q 007984 241 A-------LSALPAELGKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRK 302 (582)
Q Consensus 241 ~-------i~~l~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~l~l~~~~l~-~~~~~l-----~~~~~L~~ 302 (582)
. +......+..+++|++|+++++.+..... .....+++++++++|.+. .+|..+ ..+++|+.
T Consensus 201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 4 33222356677778888877776654222 112235778888777776 466665 77888888
Q ss_pred EEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCc
Q 007984 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382 (582)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L 382 (582)
++++++.+ .++... . .. ......++.+++.++.+..++. ...+++|
T Consensus 281 l~l~~n~~-~~p~~~--------~----------------------~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L 326 (520)
T 2z7x_B 281 HQVVSDVF-GFPQSY--------I----------------------YE--IFSNMNIKNFTVSGTRMVHMLC-PSKISPF 326 (520)
T ss_dssp EEEEECCC-CSCTHH--------H----------------------HH--HHHTCCCSEEEEESSCCCCCCC-CSSCCCC
T ss_pred ccccccce-ecchhh--------h----------------------hc--ccccCceeEEEcCCCccccccc-hhhCCcc
Confidence 88888765 222000 0 00 0011346677777776654431 1356778
Q ss_pred cEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCCh--HHhhCCCCCCEeeCCCCCCcc-CCCccccCCCCCcEEeC
Q 007984 383 TKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDL 458 (582)
Q Consensus 383 ~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l 458 (582)
++|++++|.++. +|..+..+++|++|++++|.+++++. ..+..+++|++|++++|.+.. ++...+..+++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 888888887776 56667777888888888887776432 456778888888888888777 66555777778888888
Q ss_pred CCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCc
Q 007984 459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538 (582)
Q Consensus 459 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~ 538 (582)
++|.+++..+ ..+ .++|+.|++++|+++.+|..+.++++|++|++++|+++++|..
T Consensus 407 s~N~l~~~~~----------------------~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 407 SSNILTDTIF----------------------RCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CSSCCCGGGG----------------------GSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred cCCCCCcchh----------------------hhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 8776653211 111 1689999999999999998888999999999999999999998
Q ss_pred ccccccccceeeccCCCCCc
Q 007984 539 LGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 539 ~~~~~~~L~~L~l~~~~~~~ 558 (582)
.+..+++|++|++++|++..
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCcccEEECcCCCCcc
Confidence 77777999999999999874
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=363.66 Aligned_cols=474 Identities=23% Similarity=0.283 Sum_probs=372.1
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~ 86 (582)
+.++.|+++++.++.++...+. .+++|++|++++|.++.++ ..|.++++|++|++++|.++.++ ..
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFF------------SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTT------------TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCccChhHhh------------CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 4688999999999988765443 3889999999999999885 57999999999999999999775 68
Q ss_pred hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCc-cccccCCCC
Q 007984 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM 162 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L 162 (582)
|..+++|++|++++|.+..++. .+.++++|++|++++|.+.. +|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999999999998865 58899999999999999985 6889999999999999999998664 557777888
Q ss_pred ----cEEEccCCcccccchhhhcccccCcEEEccCCcc--CccchhhcCCCCccEEeCCCCcCc------cCC-cCCcCC
Q 007984 163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL--NGMPETIGSLSRLIRLDLHQNRIL------SIP-SSISGC 229 (582)
Q Consensus 163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~------~~~-~~l~~~ 229 (582)
+.|++++|.+..+.+..+... +|+.+++++|.. ..++..+..++.++..++....+. .++ ..+..+
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 899999999999988877766 899999998744 234556666676666554432211 111 122222
Q ss_pred CC--CcEEEcCCC-cCc-ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEc
Q 007984 230 CS--LAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (582)
Q Consensus 230 ~~--L~~L~l~~~-~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l 305 (582)
.+ ++.+++.++ .+. ..+..+..+++|++|+++++.+..++......+++.+++++|.+..++. ..+++|+++++
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeC
Confidence 22 344555544 333 4456677777888888887777766655444467888888887776655 46777888888
Q ss_pred cCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccC---ChhhhccCCc
Q 007984 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEI 382 (582)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i---~~~~~~~~~L 382 (582)
++|.+...... .....++.++++++.+..+ +..+..+++|
T Consensus 333 ~~n~~~~~~~~-------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 333 TSNKGGNAFSE-------------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp ESCBSCCBCCC-------------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred cCCcccccccc-------------------------------------ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 77765322100 1234677888888777654 5677788999
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh-HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (582)
++|++++|.+..++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 99999999998887778899999999999998877644 45788999999999999998888778899999999999999
Q ss_pred cCC-CCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCc
Q 007984 462 IAS-LPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA 534 (582)
Q Consensus 462 ~l~-~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~ 534 (582)
.+. +..+..+..+++|++|++ .+.+... +..+..+++|+.|++++|+++.++ ..+.++++|++|++++|+++.
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 886 345677899999999999 5566655 667889999999999999999876 458999999999999998884
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-40 Score=354.78 Aligned_cols=507 Identities=22% Similarity=0.250 Sum_probs=387.4
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccch-hhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~-~~~~ 89 (582)
.+.+|++..++.||.++ .+++++|+|++|.|+.++ .+|.++++|++|+|++|.++.++. +|.+
T Consensus 34 ~~~~c~~~~l~~vP~~l---------------p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TEEECTTSCCSSCCSSS---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CEEECCCCCcCccCCCC---------------CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence 46789999999999877 568999999999999997 479999999999999999998855 7999
Q ss_pred CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcEE
Q 007984 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L 165 (582)
+++|++|+|++|.+..++. .|.++++|++|++++|.++.++. .++++++|++|++++|.+.. ++..+..+++|++|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999998875 58999999999999999998875 58899999999999999874 56778999999999
Q ss_pred EccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCc--cCCcCCcCCCCCcEE----
Q 007984 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEF---- 235 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L---- 235 (582)
++++|+++.+....+..+.+++ .++++.+.+..++........++.+++.++... ..+..+..+..++..
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999999988877777766544 678888888766654444555666776665432 111122223333322
Q ss_pred --------------------------EcCCCcCc----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCC
Q 007984 236 --------------------------YMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (582)
Q Consensus 236 --------------------------~l~~~~i~----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 285 (582)
.+..+... .....+....+++.+.+.++.+..+........++.+++.++
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 338 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence 22221111 222334455667777777766666555555555777777777
Q ss_pred CCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEec
Q 007984 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365 (582)
Q Consensus 286 ~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 365 (582)
.+..++. ..+..++.+.+..+....... ......++.+++.
T Consensus 339 ~~~~~~~--~~l~~L~~l~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~ls 379 (635)
T 4g8a_A 339 KFGQFPT--LKLKSLKRLTFTSNKGGNAFS-------------------------------------EVDLPSLEFLDLS 379 (635)
T ss_dssp EESSCCC--CBCTTCCEEEEESCCSCCBCC-------------------------------------CCBCTTCCEEECC
T ss_pred cccCcCc--ccchhhhhcccccccCCCCcc-------------------------------------cccccccccchhh
Confidence 6655432 245566666666665432211 0112456788888
Q ss_pred CCCCc---cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCcc
Q 007984 366 GMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441 (582)
Q Consensus 366 ~~~~~---~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~ 441 (582)
.+.+. ..+.......+++.+++..+....++..+..+++|+.+++..+.... .....+..+++++.+++++|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 87765 34566667888999999998887777778889999999998875544 344457889999999999999998
Q ss_pred CCCccccCCCCCcEEeCCCCcC-CCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhc
Q 007984 442 VPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFK 517 (582)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~ 517 (582)
+....+..+++|+.|++++|.. ....+..|..+++|++|++ .+.+..+ +..+.++++|++|++++|+++.++ ..|.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 8888889999999999999864 4456677899999999999 6666655 557889999999999999999885 4589
Q ss_pred CCCCCCEEeCCCCcCCcCCCcccccc-cccceeeccCCCCCcchHHHhccchHHHHHHHHhc
Q 007984 518 NLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 578 (582)
Q Consensus 518 ~l~~L~~L~l~~n~l~~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (582)
++++|++|++++|+|+++++..+..+ ++|+.|++++|++.- +........|++++
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C------~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC------TCEHQSFLQWIKDQ 595 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC------SGGGHHHHHHHHHT
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc------cCCcHHHHHHHHhC
Confidence 99999999999999999888766544 789999999999973 66667777788765
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=368.16 Aligned_cols=478 Identities=20% Similarity=0.229 Sum_probs=341.6
Q ss_pred cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCc-CccC-ChhhhccCCccEEEccCC
Q 007984 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSN 124 (582)
Q Consensus 48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~ 124 (582)
+..+.+++.++.+|. -.+++++|+|++|.++.+ +..|..+++|++|++++|. +..+ +..+.++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 578889999999987 457999999999999976 6689999999999999994 4466 677999999999999999
Q ss_pred cCCcC-CcccccCCCCCeEEcCCCcCCC-Cccc--cccCCCCcEEEccCCcccccch-hhhcccccCcEEEccCCccCcc
Q 007984 125 QLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM 199 (582)
Q Consensus 125 ~~~~l-~~~~~~~~~L~~L~l~~~~~~~-i~~~--l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 199 (582)
.+..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|.+..+.. ..++++++|++|++++|.+..+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 99866 7789999999999999999985 4444 8999999999999999987654 4689999999999999998653
Q ss_pred -chhhcCC--CCccEEeCCCCcCcc-CCcCCcCCCC------CcEEEcCCCcCc-ccchhhhc---cCCCcEEEcccCc-
Q 007984 200 -PETIGSL--SRLIRLDLHQNRILS-IPSSISGCCS------LAEFYMGNNALS-ALPAELGK---LSKLGTLDLHSNQ- 264 (582)
Q Consensus 200 -~~~l~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~i~-~l~~~l~~---~~~L~~L~l~~~~- 264 (582)
+..+..+ ++|+.|++++|.+.. .+..+..+.+ |+.|++++|.+. ..+..+.. .+.++.+.+..+.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 4555555 899999999998874 4555555555 999999999776 33333322 2455566554221
Q ss_pred --------ccccchhh----hcccccEEEccCCCCCCC-CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHh
Q 007984 265 --------LKEYCVEA----CQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331 (582)
Q Consensus 265 --------~~~~~~~~----~~~~L~~l~l~~~~l~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (582)
+....... ...+++.+++++|.+..+ +..+..+++|++|++++|.+..+....+..
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----------- 312 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG----------- 312 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-----------
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-----------
Confidence 11111111 113466666666666553 334566666677777666665443222211
Q ss_pred cCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccC-ChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEE
Q 007984 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLI 409 (582)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~ 409 (582)
...++.+++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|+
T Consensus 313 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 313 ------------------------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp ------------------------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred ------------------------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 23455666666655544 3344445666666666666555443 355566666666
Q ss_pred cccCcCCCCChH---------------HhhCCCCCCEeeCCCCCCccCCCc-cccCCCCCcEEeCCCCcCCCCCCC-CCC
Q 007984 410 LSRNKIKDWPDA---------------ILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLPENP-PFS 472 (582)
Q Consensus 410 l~~~~l~~~~~~---------------~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 472 (582)
+++|.++.+... .-....+++.|++++|.+..+... .+..+++|+.|++++|.+++.... .+.
T Consensus 369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence 666655543210 001133455555555555544322 134789999999999999866443 466
Q ss_pred CCccchhhhh-cccccc------CchhhhccCCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCccccccc
Q 007984 473 SLPHLQELYL-RMQLRE------APTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEP 544 (582)
Q Consensus 473 ~~~~L~~L~l-~~~~~~------~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 544 (582)
.+++|+.|++ .+.+.. .+..+..+++|+.|++++|.++.++. .|.++++|++|+|++|+++++|+..+. +
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence 7899999999 554432 23457789999999999999998764 489999999999999999999987766 8
Q ss_pred ccceeeccCCCCCcchHHHhc
Q 007984 545 SLQALRLDGNPLRSIRRTILD 565 (582)
Q Consensus 545 ~L~~L~l~~~~~~~~~~~~~~ 565 (582)
+|+.|++++|.+..+.+..|.
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCCS
T ss_pred cccEEECCCCcCCCCChhHhC
Confidence 999999999999988877664
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-41 Score=352.10 Aligned_cols=467 Identities=20% Similarity=0.201 Sum_probs=346.7
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEc
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC 121 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l 121 (582)
|+...+.+.+++.++.+|..+. ++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4455567888888999887654 7999999999999876 568899999999999999998764 56889999999999
Q ss_pred cCCcCCcCCcc-cccCCCCCeEEcCCCcCCC--CccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEccCCccC
Q 007984 122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN 197 (582)
Q Consensus 122 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~ 197 (582)
++|.+..++.. +.++++|++|++++|.+.. ++..+..+++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999877654 8889999999999998884 45678888999999998887 56666666777777888888777775
Q ss_pred c-cchhhcCCCCccEEeCCCCcCccCCcCC-cCCCCCcEEEcCCCcCcccc----hhhhccCCCcEEEcccCcccccchh
Q 007984 198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE 271 (582)
Q Consensus 198 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~i~~l~----~~l~~~~~L~~L~l~~~~~~~~~~~ 271 (582)
. .+..+..+++|+.|+++++.+..++..+ ..+++|++|++++|.+..++ .....+++|+.|+++++.+......
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 4 4566667777777777777665444332 34666666777666666431 1123345666666666655432211
Q ss_pred hhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (582)
Q Consensus 272 ~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (582)
. ++..+..+++++.+++++|.+..+....... ..
T Consensus 242 ~-----------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------------------------~~ 275 (549)
T 2z81_A 242 E-----------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSE-----------------------------SD 275 (549)
T ss_dssp H-----------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCT-----------------------------TT
T ss_pred H-----------------HHHHhhhhccccccccccccccccccccccc-----------------------------hh
Confidence 1 1223455667777777777654432110000 00
Q ss_pred hhcccccccEEEecCCCCccC------ChhhhccCCccEEEcCCCcCCcCCccc-cCCCCCCEEEcccCcCCCCCh---H
Q 007984 352 ATRLSVTSKELSLEGMNLSAI------PSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPD---A 421 (582)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~~i------~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~l~~~~~---~ 421 (582)
.......++.+.+.++.+... +......++|+++++++|.+..+|..+ ..+++|++|++++|.+++..+ .
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchh
Confidence 011224567777777765432 222334678999999999999999865 579999999999999887432 2
Q ss_pred HhhCCCCCCEeeCCCCCCccCCC--ccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchhhhccCC
Q 007984 422 ILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQ 498 (582)
Q Consensus 422 ~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~ 498 (582)
.++.+++|++|++++|+++.++. ..+..+++|++|++++|.++.+ +..+..+++|++|++ .+.+..++..+ .++
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~ 432 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQT 432 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTTS--CTT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccchh--cCC
Confidence 36789999999999999988753 4588999999999999999865 456888999999999 66666665543 369
Q ss_pred CCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhcc
Q 007984 499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 566 (582)
Q Consensus 499 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 566 (582)
|++|++++|++++++ .++++|++|++++|+++.+|.. ..+++|+.|++++|++..+++..|..
T Consensus 433 L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred ceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhc
Confidence 999999999999875 4789999999999999999984 34599999999999999998887764
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-40 Score=356.13 Aligned_cols=438 Identities=18% Similarity=0.217 Sum_probs=266.7
Q ss_pred cCccEEEcCCCCcc-chhHhhcCCCCCcEEEc-CCCCCccc-c-------------------------------------
Q 007984 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P------------------------------------- 84 (582)
Q Consensus 45 ~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L-~~~~~~~l-~------------------------------------- 84 (582)
.+++.|+|+++.+. .+|..++++++|++|+| +++.+... +
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999988 77889999999999999 66643311 0
Q ss_pred ---hhh-----------hCCCCCcEEecCC--CcCccCChhhhccCCccEEEccCCcCCc------------------CC
Q 007984 85 ---AAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (582)
Q Consensus 85 ---~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------l~ 130 (582)
..+ .....++.+.+.. |.+..+|..+.++++|++|++++|.++. +|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 000 1111233333332 4555678888888888888888888876 77
Q ss_pred cccc--cCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc-ccc-cchhhhcccc-------cCcEEEccCCccCc
Q 007984 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASWT-------MLTELIASKNLLNG 198 (582)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~-------~L~~L~l~~~~~~~ 198 (582)
..++ ++++|+.|++++|.+. .+|..+..+++|++|++++|+ ++. ..+..++.++ +|++|++++|.+..
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ 562 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence 7766 8888888888888754 677778888888888888887 664 2222244443 78888888887777
Q ss_pred cch--hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCC-CcEEEcccCcccccchhhhcc
Q 007984 199 MPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (582)
Q Consensus 199 ~~~--~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~ 275 (582)
+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+..++.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~----- 636 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN----- 636 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS-----
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch-----
Confidence 777 7777888888888888777777 777778888888888877777777777777 7777777777665443
Q ss_pred cccEEEccCCCCCCCCccccCCC--CCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhh
Q 007984 276 RLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353 (582)
Q Consensus 276 ~L~~l~l~~~~l~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (582)
.+...+ +|+.|++++|.+.......... ...
T Consensus 637 -----------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~------------------------------l~~ 669 (876)
T 4ecn_A 637 -----------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCS------------------------------MDD 669 (876)
T ss_dssp -----------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSC------------------------------TTT
T ss_pred -----------------hhhccccCCCCEEECcCCcCCCccccchhh------------------------------hcc
Confidence 222222 2555555555443211000000 000
Q ss_pred cccccccEEEecCCCCccCChhhh-ccCCccEEEcCCCcCCcCCccccC--------CCCCCEEEcccCcCCCCChHHh-
Q 007984 354 RLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDAIL- 423 (582)
Q Consensus 354 ~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~l~~~l~~--------~~~L~~L~l~~~~l~~~~~~~l- 423 (582)
....+++.+++.+|.+..+|..++ .+++|+.|++++|.++.+|..+.. +++|++|++++|+++.++....
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 001133444444444455555554 356666777776666666553322 2266666666666665554322
Q ss_pred hCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc-cccCchhhhccCCCCEE
Q 007984 424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDILRLQQLRIL 502 (582)
Q Consensus 424 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L 502 (582)
..+++|+.|++++|++..++. .+..+++|+.|++++|... . ++. ...+|..+..+++|+.|
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~l-------s----------~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDA-------E----------GNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCT-------T----------CCBCCCCCCTTGGGCSSCCEE
T ss_pred ccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCc-------c----------cccccccChHHHhcCCCCCEE
Confidence 256666666666666666543 3556666666666654300 0 011 12334455566667777
Q ss_pred ecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCC
Q 007984 503 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 555 (582)
Q Consensus 503 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~ 555 (582)
++++|.+..+|..+. ++|++|+|++|++..+....+.....+..+.+.+++
T Consensus 812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 812 QIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp ECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred ECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 777776666665543 467777777776665544333222333344444443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-41 Score=356.80 Aligned_cols=157 Identities=29% Similarity=0.415 Sum_probs=95.8
Q ss_pred cCCccEEEcCCCcCCcCCcc-ccCCCCCCEEEcccCcCCCCChHHhhCCC-------CCCEeeCCCCCCccCCCccc-cC
Q 007984 379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS-------SLSCLKLDNNPLRQVPSDGF-KD 449 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~l~-------~L~~L~l~~~~l~~~~~~~~-~~ 449 (582)
.++|++|++++|.++.+|.. +..+++|++|++++|.++.++...+.... +|++|++++|.++.++...+ ..
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 44556666666655555543 23455566666666655554443333222 55555555555555443311 25
Q ss_pred CCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecC------CCcCC-ccchhhcCCCCC
Q 007984 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLS------QNSLQ-SIPEGFKNLTSL 522 (582)
Q Consensus 450 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~------~~~l~-~l~~~~~~l~~L 522 (582)
+++|+.|++++|.+++ +|..+..+++|+.|+++ +|.+. .+|..+.++++|
T Consensus 512 l~~L~~L~Ls~N~l~~-----------------------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-----------------------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CTTCCEEECCSSCCSS-----------------------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CCCcCEEECCCCCCCC-----------------------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 5555555555555543 44556667777777774 44444 667778888888
Q ss_pred CEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchH
Q 007984 523 TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRR 561 (582)
Q Consensus 523 ~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 561 (582)
++|++++|+++.+|..+. ++|+.|++++|++..++.
T Consensus 569 ~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 569 TQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEEC
T ss_pred CEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccH
Confidence 888888888887877533 688888888888777664
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-41 Score=348.27 Aligned_cols=424 Identities=22% Similarity=0.243 Sum_probs=333.5
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccchhh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI 87 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~~~~ 87 (582)
+.++.|+++++.+..++...+.. +++|++|++++|.++.+ |+.|..+++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 67899999999999988766554 78899999999999987 67899999999999999999988777
Q ss_pred hCCCCCcEEecCCCcCcc--CChhhhccCCccEEEccCCcCCcCCcccccCCCC--CeEEcCCCcC--C-CCccccccCC
Q 007984 88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS 160 (582)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~-~i~~~l~~~~ 160 (582)
.+++|++|++++|.+.. +|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.+ . ..+..+..+.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999986 57889999999999999999875 356778888 9999999988 3 4555555554
Q ss_pred -CCcEEEccCCccc-ccchhhhcccccCcEEEccCCc-------cCccchhhcCCCCccEEeCCCCcCcc-----CCcCC
Q 007984 161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI 226 (582)
Q Consensus 161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l 226 (582)
+...++++++.+. .+....+..+++|+.+++++|. +......+..+++|+.|+++++.+.. ++...
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 2335666777654 3455557788999999998885 33323367778899999998887652 11111
Q ss_pred cCCCCCcEEEcCCCcCc-ccchhh-----hccCCCcEEEcccCcccccchhhh-----cccccEEEccCCCCCCCCcccc
Q 007984 227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEAC-----QLRLSVLDLSNNSLSGLPPEIG 295 (582)
Q Consensus 227 ~~~~~L~~L~l~~~~i~-~l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~-----~~~L~~l~l~~~~l~~~~~~l~ 295 (582)
.+++|++|++++|.+. .+|..+ ..+++|+.++++++.+ .++.... ..+++.+++++|.+...+. ..
T Consensus 245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 2458889999988888 777777 7888888888888887 5542211 1347888888887765431 25
Q ss_pred CCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChh
Q 007984 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375 (582)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~ 375 (582)
.+++|++|++++|.+.. .+|..
T Consensus 322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~ 343 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN 343 (520)
T ss_dssp SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence 67777777777776532 24455
Q ss_pred hhccCCccEEEcCCCcCCc---CCccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCC
Q 007984 376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (582)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 451 (582)
+..+++|++|++++|.++. +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.....+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 6668899999999999986 44568899999999999999998 6666678899999999999998765433332 7
Q ss_pred CCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007984 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530 (582)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n 530 (582)
+|+.|++++|.++.+ +..+..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 422 ~L~~L~Ls~N~l~~i-----------------------p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSI-----------------------PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TCCEEECCSSCCCCC-----------------------CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCccccc-----------------------chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 999999999987633 34455789999999999999999876 889999999999999
Q ss_pred cCCc
Q 007984 531 NISA 534 (582)
Q Consensus 531 ~l~~ 534 (582)
+++.
T Consensus 479 ~~~c 482 (520)
T 2z7x_B 479 PWDC 482 (520)
T ss_dssp CBCC
T ss_pred CCcc
Confidence 8874
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-40 Score=350.63 Aligned_cols=412 Identities=19% Similarity=0.253 Sum_probs=295.2
Q ss_pred cCccEEEcCCCCcc-chhHhhcCCCCCcEEEcCCCCCc-------------ccchh---------------------hh-
Q 007984 45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAA---------------------IG- 88 (582)
Q Consensus 45 ~~l~~L~l~~~~i~-~~~~~~~~~~~L~~L~L~~~~~~-------------~l~~~---------------------~~- 88 (582)
.+++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|.. +.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999988 77889999999999999999652 11110 00
Q ss_pred ------------------CCCCCcEEecC--CCcCccCChhhhccCCccEEEccCCcCCc------------------CC
Q 007984 89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP 130 (582)
Q Consensus 89 ------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------l~ 130 (582)
....++.+.+. .|.++.+|..++++++|++|++++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 01112222222 34555677778888888888888888776 77
Q ss_pred cccc--cCCCCCeEEcCCCcCC-CCccccccCCCCcEEEccCCc-ccc-cchhhhccc------ccCcEEEccCCccCcc
Q 007984 131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------TMLTELIASKNLLNGM 199 (582)
Q Consensus 131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~~~~~~~ 199 (582)
..++ ++++|++|++++|.+. .+|..+..+++|++|++++|+ ++. ..+..++.+ ++|++|++++|.+..+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 7777 8888888888888754 677778888888888888887 664 222234444 7788888888877777
Q ss_pred ch--hhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCcccchhhhccCC-CcEEEcccCcccccchhhhcc
Q 007984 200 PE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL 275 (582)
Q Consensus 200 ~~--~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~ 275 (582)
|. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+..+|..+..+++ |++|++++|.++.++......
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 77 7777788888888888777 677 777777888888888877777777777777 777777777776554432221
Q ss_pred ---cccEEEccCCCCCC-CCcccc-------CCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccc
Q 007984 276 ---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (582)
Q Consensus 276 ---~L~~l~l~~~~l~~-~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (582)
+|+.+++++|.+.+ .|..+. .+++
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~--------------------------------------------- 434 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------------------------------------- 434 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC---------------------------------------------
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCC---------------------------------------------
Confidence 35555555555544 222233 3334
Q ss_pred hhhHHhhhhcccccccEEEecCCCCccCChhhhc-cCCccEEEcCCCcCCcCCccccC--------CCCCCEEEcccCcC
Q 007984 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKI 415 (582)
Q Consensus 345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~-~~~L~~L~l~~~~l~~l~~~l~~--------~~~L~~L~l~~~~l 415 (582)
++.+++.+|.+..+|..++. +++|++|++++|.++.+|..... +++|++|++++|.+
T Consensus 435 --------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 435 --------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp --------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred --------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 45555555555667766654 78999999999999988764322 23899999999999
Q ss_pred CCCChHHh-hCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc-cccCchhh
Q 007984 416 KDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDI 493 (582)
Q Consensus 416 ~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~ 493 (582)
+.++...+ ..+++|++|++++|+++.++. .+..+++|+.|++++|...+ .+. ...++..+
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls-----------------~N~l~~~~p~~l 562 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQ-----------------GNRTLREWPEGI 562 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTT-----------------CCBCCCCCCTTG
T ss_pred CccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccc-----------------cCcccccChHHH
Confidence 98776543 389999999999999999655 47889999999997764100 011 12345667
Q ss_pred hccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCC
Q 007984 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536 (582)
Q Consensus 494 ~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~ 536 (582)
..+++|++|++++|.++.+|..+. ++|++|++++|++..++
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 788999999999999999987754 89999999999887654
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-40 Score=352.98 Aligned_cols=435 Identities=23% Similarity=0.318 Sum_probs=290.7
Q ss_pred CCCcEEEcCCCCCc-ccchhhhCCCCCcEEec-CCCcCccC-Chhhhcc----C-----CccEE------Ec-cCCcCC-
Q 007984 68 PLLTVLNVSHNKLS-ELPAAIGELHMLKSLDV-SFNSIMKI-PDEIGSA----T-----ALVKF------DC-SSNQLK- 127 (582)
Q Consensus 68 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l-~~~~~~~l-~~~~~~~----~-----~L~~L------~l-~~~~~~- 127 (582)
.+++.|+|+++.+. .+|..++++++|++|+| ++|.+... +...... . .++.. .. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999998 77889999999999999 77755421 1000000 0 00000 00 000000
Q ss_pred -----------cCCcccccCCCCCeEEcCC--CcCCCCccccccCCCCcEEEccCCcccc------------------cc
Q 007984 128 -----------ELPSSLGRCLNLSDFKASN--NCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS 176 (582)
Q Consensus 128 -----------~l~~~~~~~~~L~~L~l~~--~~~~~i~~~l~~~~~L~~L~l~~~~i~~------------------~~ 176 (582)
..+........++.+.+.. |.+..+|..+..+++|+.|++++|+++. ++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0000111222333333333 4455567777777777777777777766 44
Q ss_pred hhhhc--ccccCcEEEccCCcc-CccchhhcCCCCccEEeCCCCc-Ccc--CCcC-------CcCCCCCcEEEcCCCcCc
Q 007984 177 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSS-------ISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 177 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~-------l~~~~~L~~L~l~~~~i~ 243 (582)
.. ++ .+++|++|++++|.+ ..+|..+..+++|+.|++++|. +.. +|.. +..+++|++|++++|.+.
T Consensus 483 ~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 43 44 777777777777764 4566777777777777777776 653 4443 334458888888888888
Q ss_pred ccch--hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCC-CCeEEccCCCCccccccccCC
Q 007984 244 ALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNG 320 (582)
Q Consensus 244 ~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~ 320 (582)
.+|. .+..+++|++|++++|.+..++......+|+.|++++|.+..+|..+..+++ |++|++++|.+..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp------ 635 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP------ 635 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC------
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc------
Confidence 7777 7888888888888888877666322334478888888888778878888888 999999998875332
Q ss_pred CcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhcc--CCccEEEcCCCcCCcCCc-
Q 007984 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPP- 397 (582)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~--~~L~~L~l~~~~l~~l~~- 397 (582)
..+... ++|+.|++++|.+...+.
T Consensus 636 -----------------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 636 -----------------------------------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp -----------------------------------------------------SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred -----------------------------------------------------hhhhccccCCCCEEECcCCcCCCcccc
Confidence 222222 336777777776654221
Q ss_pred ---ccc--CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC-------CCCcEEeCCCCcCCC
Q 007984 398 ---ELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASL 465 (582)
Q Consensus 398 ---~l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~ 465 (582)
.+. .+++|+.|++++|.++.++...+..+++|+.|++++|.+..++...+... ++|+.|++++|.++.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 111 33467777777777777776666677777777777777776665544322 377777777777774
Q ss_pred CCCCCCC--CCccchhhhh-ccccccCchhhhccCCCCEEecCC------CcCC-ccchhhcCCCCCCEEeCCCCcCCcC
Q 007984 466 PENPPFS--SLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISAL 535 (582)
Q Consensus 466 ~~~~~~~--~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~------~~l~-~l~~~~~~l~~L~~L~l~~n~l~~l 535 (582)
+. ..+. .+++|+.|++ .+.+..++..+..+++|+.|++++ |.+. .+|..+.++++|++|+|++|+++.+
T Consensus 743 lp-~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 743 LS-DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp CC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred ch-HHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 43 3343 6777777777 556666777788899999999976 5555 6788899999999999999999999
Q ss_pred CCcccccccccceeeccCCCCCcchHHHhcc
Q 007984 536 PPELGLLEPSLQALRLDGNPLRSIRRTILDR 566 (582)
Q Consensus 536 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 566 (582)
|..+. ++|+.|++++|++..++...|..
T Consensus 822 p~~l~---~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 822 DEKLT---PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred CHhhc---CCCCEEECCCCCCCccChHHccc
Confidence 98743 79999999999999888666544
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=339.79 Aligned_cols=449 Identities=21% Similarity=0.242 Sum_probs=302.4
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc-hhhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEc
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDC 121 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l 121 (582)
|...++++++++.++.+|..+. ++|++|++++|.+..++ ..|..+++|++|++++|.+..+ |..+.++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 4455778888888887776553 67888888888887665 4777888888888888887765 556777888888888
Q ss_pred cCCcCCcCCcccccCCCCCeEEcCCCcCCCCc--cccccCCCCcEEEccCCcccccchhhhcccccC--cEEEccCCcc-
Q 007984 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL- 196 (582)
Q Consensus 122 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L--~~L~l~~~~~- 196 (582)
++|.++.+|.. .+++|++|++++|.+..++ ..+..+++|++|++++|++.... +..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence 88888877765 6788888888888877654 57888888888888888776532 5555555 8888888776
Q ss_pred -Cc-cchhhcCCC-CccEEeCCCCcCcc-C-CcCCcCCCCCcEEEcCCCcC-----cccchhhhccCCCcEEEcccCccc
Q 007984 197 -NG-MPETIGSLS-RLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNAL-----SALPAELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 197 -~~-~~~~l~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~i-----~~l~~~l~~~~~L~~L~l~~~~~~ 266 (582)
.. .+..+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|.. ......+..+++|+.+++.++.+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 32 334444333 12245666666553 2 22456678888888888752 233445677888888888877665
Q ss_pred cc-----chhhhcccccEEEccCCCCC-CCCccc-----cCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCC
Q 007984 267 EY-----CVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (582)
Q Consensus 267 ~~-----~~~~~~~~L~~l~l~~~~l~-~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (582)
.. .......+++++++++|.+. .+|..+ ..++.|+.+++..+.+ .++. ...
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~--------~~~--------- 324 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSK--------EAL--------- 324 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCH--------HHH---------
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecCh--------hhh---------
Confidence 32 22223346899999998887 466654 4444444444444433 1110 000
Q ss_pred CCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCc
Q 007984 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK 414 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~ 414 (582)
.. ......++.+++.++.+..++. ...+++|++|++++|.++. +|..+..+++|++|++++|+
T Consensus 325 -------------~~--~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 325 -------------YS--VFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp -------------HH--HHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred -------------hh--hhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 00 0011346667777766544331 1345667777777777666 45566677777777777777
Q ss_pred CCCCCh--HHhhCCCCCCEeeCCCCCCcc-CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch
Q 007984 415 IKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT 491 (582)
Q Consensus 415 l~~~~~--~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 491 (582)
+++++. ..+..+++|++|++++|.+.. ++...+..+++|++|++++|.+++..+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------- 445 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----------------------- 445 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-----------------------
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-----------------------
Confidence 766543 335667777777777777766 555556667777777777776543211
Q ss_pred hhhcc-CCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 492 DILRL-QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 492 ~~~~~-~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
..+ ++|+.|++++|+++.+|..+.++++|++|++++|+++++|+..+..+++|+.|++++|++..
T Consensus 446 --~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 446 --RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp --SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred --hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 112 68999999999999999887899999999999999999999866667999999999999863
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-38 Score=331.88 Aligned_cols=442 Identities=22% Similarity=0.229 Sum_probs=329.1
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~ 86 (582)
...++++++++.++.+|..+ .+++++|++++|.++.++ ..|..+++|++|++++|.++.+ |++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~---------------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS---------------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred CCCcEEEcCCCCCccCCCCC---------------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 34478999999999999876 468999999999999886 5899999999999999999977 668
Q ss_pred hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCC--cccccCCCCCeEEcCCCcCCCCccccccCCCC--
Q 007984 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM-- 162 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L-- 162 (582)
|..+++|++|++++|.+..+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.+... .+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L 171 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHL 171 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCE
T ss_pred hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhcee
Confidence 99999999999999999998876 8999999999999999764 6899999999999999998753 45556666
Q ss_pred cEEEccCCcc--cccchhhhcccc-cCcEEEccCCccCc-cc-hhhcCCCCccEEeCCCCcCc-----cCCcCCcCCCCC
Q 007984 163 SKLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL 232 (582)
Q Consensus 163 ~~L~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L 232 (582)
++|++++|.+ ....+..+..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|... .....+..+++|
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9999999988 655555555543 11144666666543 22 34556778888888887421 222345667777
Q ss_pred cEEEcCCCcCc-----ccchhhhccCCCcEEEcccCccc-ccchhhhc---ccccEE---EccCCCCCCCCc-ccc---C
Q 007984 233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LRLSVL---DLSNNSLSGLPP-EIG---K 296 (582)
Q Consensus 233 ~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~---~~L~~l---~l~~~~l~~~~~-~l~---~ 296 (582)
+.+++.++.+. .++..+ ..++|++|++++|.+. .++...+. ..++.+ ++..+.+ .+|. .+. .
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence 77777766655 222222 2348888888888776 44433211 233333 4444444 3332 111 1
Q ss_pred CCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCcc-CChh
Q 007984 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSE 375 (582)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~~~ 375 (582)
..++++|++++|.+..... ......++.+++.++.+.. +|..
T Consensus 330 ~~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp TCCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred cCcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhh
Confidence 2568888888877643210 0123567788888888775 6677
Q ss_pred hhccCCccEEEcCCCcCCcCC---ccccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEeeCCCCCCccCCCccccCCC
Q 007984 376 IWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451 (582)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 451 (582)
+..+++|++|++++|.++.++ ..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++.....+. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 778999999999999999765 458899999999999999988 7776788999999999999998764333222 7
Q ss_pred CCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007984 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530 (582)
Q Consensus 452 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n 530 (582)
+|+.|++++|.++.+. ..+..+++|+.|++++|+++.+|.. +..+++|++|++++|
T Consensus 451 ~L~~L~L~~N~l~~ip-----------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIP-----------------------KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TCSEEECCSSCCCCCC-----------------------TTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred cCCEEECCCCcCcccC-----------------------hhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 9999999999887543 2334668888999999999888876 888899999999998
Q ss_pred cCC
Q 007984 531 NIS 533 (582)
Q Consensus 531 ~l~ 533 (582)
++.
T Consensus 508 ~~~ 510 (562)
T 3a79_B 508 PWD 510 (562)
T ss_dssp CBC
T ss_pred CcC
Confidence 776
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-37 Score=312.21 Aligned_cols=404 Identities=27% Similarity=0.319 Sum_probs=202.9
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc-ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (582)
...|++|+++++.++.+|+.++++++|++|++++|.+. .+|..++.+.+|+.+++.+|. ..++++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence 46788888888888888888888888888888888876 667777777766444333221 1234555555
Q ss_pred CCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchh
Q 007984 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 202 (582)
Q Consensus 123 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (582)
+|.++.+|.. .++|++|++++|.+..+|.. .++|++|++++|+++.++.. .++|++|++++|.+..+| .
T Consensus 80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~ 148 (454)
T 1jl5_A 80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E 148 (454)
T ss_dssp TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence 5555555432 24555666665555555432 25566666666655544321 145666666666666555 3
Q ss_pred hcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEc
Q 007984 203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (582)
Q Consensus 203 l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 282 (582)
+..+++|+.|++++|.+..+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+..++.. ..+++++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l 222 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA 222 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence 566666666666666666555432 36666777776666665 466667777777777766654432 235777777
Q ss_pred cCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEE
Q 007984 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (582)
Q Consensus 283 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (582)
++|.+..+| .+..+++|++|++++|.+..++. ....++.+
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~---------------------------------------~~~~L~~L 262 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---------------------------------------LPPSLEAL 262 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS---------------------------------------CCTTCCEE
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc---------------------------------------cccccCEE
Confidence 777777666 37778888888888877653321 01245556
Q ss_pred EecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCC-CCCCEeeCCCCCCcc
Q 007984 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ 441 (582)
Q Consensus 363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~l~~ 441 (582)
++.+|.+..+|.. .++|++|++++|.++.++.. .++|++|++++|.+++++ .+ ++|++|++++|++.+
T Consensus 263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence 6666655555543 25667777777766655431 256677777766665432 22 466777777766666
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCc---cchhhcC
Q 007984 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS---IPEGFKN 518 (582)
Q Consensus 442 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~ 518 (582)
++.. +++|++|++++|.++.+.. .+++|++|++++|.++. +|..+..
T Consensus 332 lp~~----~~~L~~L~L~~N~l~~lp~--------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 332 LPAL----PPRLERLIASFNHLAEVPE--------------------------LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCSCCCC--------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred cccc----CCcCCEEECCCCccccccc--------------------------hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 5432 4666777777666654322 23556666666666554 3344444
Q ss_pred C-------------CCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcc
Q 007984 519 L-------------TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 559 (582)
Q Consensus 519 l-------------~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~ 559 (582)
+ ++|++|++++|+++++|. .+++++.|++.+|.+...
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~----iP~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDP 431 (454)
T ss_dssp EECCC-------------------------------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCcccc----chhhHhheeCcCcccCCc
Confidence 4 788999999998886543 346788888888876554
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-36 Score=318.24 Aligned_cols=476 Identities=21% Similarity=0.240 Sum_probs=366.7
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCcccch-h
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l~~-~ 86 (582)
+.+++||++++.++.+|...|.. +++|++|+|++|.++.++. +|.++++|++|+|++|+++.++. .
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 36899999999999999765544 8899999999999999865 79999999999999999998865 7
Q ss_pred hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCc--CCcccccCCCCCeEEcCCCcCCCCc-cccccCCC-
Q 007984 87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK- 161 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~- 161 (582)
|.++++|++|++++|.+..++. .|+++++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+.+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8999999999999999998865 48999999999999999874 4678889999999999999998653 33444333
Q ss_pred ---CcEEEccCCcccccchhhhcccccCcEEEccCCccC--ccchhhcCCCCccEEeC----------------------
Q 007984 162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL---------------------- 214 (582)
Q Consensus 162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l---------------------- 214 (582)
...++++.+.+..+....+.. ..++.+++.++... ..+..+..+..++...+
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 347888888888776654433 34555666555332 11222333333332222
Q ss_pred --------CCCcC----ccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEc
Q 007984 215 --------HQNRI----LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (582)
Q Consensus 215 --------~~~~~----~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 282 (582)
..+.. ......+....+++.+.+.++.+..++ .+.....++.+++.++.+..+... ....++.+++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~l~l 356 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTF 356 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCC-BCTTCCEEEE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcc-cchhhhhccc
Confidence 21111 122334566778889999888877654 356678999999999988766543 2345888888
Q ss_pred cCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEE
Q 007984 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362 (582)
Q Consensus 283 ~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 362 (582)
..+.....+ ....+++++.++++.|.+...... .........++.+
T Consensus 357 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L 402 (635)
T 4g8a_A 357 TSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCC---------------------------------SQSDFGTISLKYL 402 (635)
T ss_dssp ESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEEC---------------------------------CHHHHSCSCCCEE
T ss_pred ccccCCCCc-ccccccccccchhhcccccccccc---------------------------------ccchhhhhhhhhh
Confidence 888766543 345789999999999987533210 0111223567888
Q ss_pred EecCCCCccCChhhhccCCccEEEcCCCcCCcCC--ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCc
Q 007984 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440 (582)
Q Consensus 363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 440 (582)
++..+....++..+..+++|+.+++.++...... ..+..+++++.++++.|.+.......+..+++|+.|++++|.+.
T Consensus 403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 8888888877778888999999999998766533 35788999999999999998888888899999999999999744
Q ss_pred -cCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCc-hhhhccCCCCEEecCCCcCCcc-chhh
Q 007984 441 -QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLRILDLSQNSLQSI-PEGF 516 (582)
Q Consensus 441 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l-~~~~ 516 (582)
.+.+..|..+++|++|++++|.++++.+..|.++++|++|++ .+.+..++ ..+..+++|++|++++|+++.+ |..+
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 455667899999999999999999999999999999999999 66777664 4688999999999999999977 4567
Q ss_pred cCC-CCCCEEeCCCCcCC
Q 007984 517 KNL-TSLTELDLSDNNIS 533 (582)
Q Consensus 517 ~~l-~~L~~L~l~~n~l~ 533 (582)
.++ ++|++|++++|.+.
T Consensus 563 ~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCCTTCCEEECTTCCBC
T ss_pred HhhhCcCCEEEeeCCCCc
Confidence 777 68999999998765
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-35 Score=299.52 Aligned_cols=349 Identities=26% Similarity=0.292 Sum_probs=240.0
Q ss_pred HHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCcc-chhHhhcCCCCC-------------cE
Q 007984 7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TV 72 (582)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~L-------------~~ 72 (582)
+.+.+++++++++.++.+|..+.. +++|++|+++++.+. .+|..++.+++| ++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence 358899999999999999987643 889999999999877 677788877764 99
Q ss_pred EEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCC
Q 007984 73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 152 (582)
Q Consensus 73 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i 152 (582)
|+++++.++.+|.. .++|++|++++|.+..+|.. .++|++|++++|.+..++.. .++|++|++++|.+..+
T Consensus 76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCC
Confidence 99999999887762 47899999999999888753 47899999999998877643 26899999999999988
Q ss_pred ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCC
Q 007984 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232 (582)
Q Consensus 153 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L 232 (582)
| .++.+++|++|++++|+++.++.. ..+|++|++++|.+..++ .+..+++|+.|++++|.+..+|... ++|
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L 217 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL 217 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence 7 689999999999999998876542 358999999999998887 5888999999999999988776543 589
Q ss_pred cEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (582)
Q Consensus 233 ~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (582)
++|++++|.+..+|. ++.+++|++|++++|.+..++.. ..+++.+++++|.+.+++.. .++|++|++++|.++.
T Consensus 218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence 999999999988874 88889999999999988876642 35688999998888887653 4788888888887754
Q ss_pred ccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcC
Q 007984 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392 (582)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l 392 (582)
++. .+..++.+++.++.+..++.. .++|++|++++|.+
T Consensus 292 l~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 292 LSE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKL 329 (454)
T ss_dssp ESC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCC
T ss_pred ccC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcc
Confidence 320 012345555555555443321 13555555555555
Q ss_pred CcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCcc
Q 007984 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441 (582)
Q Consensus 393 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 441 (582)
+.+|.. +++|++|++++|.++.++. .+++|++|++++|++..
T Consensus 330 ~~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred cccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence 554432 3455555555555554443 24555555555555554
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-34 Score=293.02 Aligned_cols=346 Identities=25% Similarity=0.360 Sum_probs=227.9
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
+++++.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 456778888777777665 36677778888888777777655 7777777788777777776655 77777777777777
Q ss_pred CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (582)
Q Consensus 124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (582)
|.+..++. +.++++|++|++++|.+..++ .+..+++|++|+++ +.+..+.+ +..+++|++|++++|.+..++ .+
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l 195 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL 195 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence 77776654 667777777777777777664 46777777777775 33443333 666677777777777666553 35
Q ss_pred cCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEcc
Q 007984 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283 (582)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~ 283 (582)
..+++|+.|++++|.+...+. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+...+......+|+.++++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 566667777777666665433 555666666666666666553 455666666666666666555443333345555555
Q ss_pred CCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEE
Q 007984 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363 (582)
Q Consensus 284 ~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 363 (582)
+|.+..++. +..+++|++|++++|.+
T Consensus 274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l----------------------------------------------------- 299 (466)
T 1o6v_A 274 ANQISNISP-LAGLTALTNLELNENQL----------------------------------------------------- 299 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCC-----------------------------------------------------
T ss_pred CCccCcccc-ccCCCccCeEEcCCCcc-----------------------------------------------------
Confidence 555555443 44555555555555544
Q ss_pred ecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCC
Q 007984 364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443 (582)
Q Consensus 364 l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 443 (582)
..++. +..+++|++|++++|.+++++. +..+++|++|++++|.+++.+ .+..+++|+.|++++|++.+..
T Consensus 300 ------~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 300 ------EDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp ------SCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred ------cCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence 22222 3446677777777777776654 667777777777777777763 3677777777777777777665
Q ss_pred CccccCCCCCcEEeCCCCcCCCC
Q 007984 444 SDGFKDIPMLQILDLSYNIASLP 466 (582)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~l~~~ 466 (582)
+ +..+++|+.|++++|.+++.
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEECC
T ss_pred h--hhcCCCCCEEeccCCcccCC
Confidence 4 66777777777777776654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-34 Score=294.12 Aligned_cols=352 Identities=23% Similarity=0.358 Sum_probs=267.4
Q ss_pred hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEc
Q 007984 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (582)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l 167 (582)
..+++++.|++.++.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 346789999999999988874 7889999999999999998876 8899999999999999998876 899999999999
Q ss_pred cCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccch
Q 007984 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247 (582)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~ 247 (582)
++|.++.+++ +..+++|++|++++|.+..++ .+..+++|+.|++++ .+...+ .+..+++|++|++++|.+..++
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~- 193 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS- 193 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-
Confidence 9999988765 888999999999999888775 477888999999863 444443 3778888888888888888764
Q ss_pred hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHH
Q 007984 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327 (582)
Q Consensus 248 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 327 (582)
.+..+++|++|++++|.+..........+|+.+++++|.+..+ ..+..+++|++|++++|.+..
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~--------------- 257 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN--------------- 257 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---------------
T ss_pred hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc---------------
Confidence 4777888888888888877665544445577777777766665 235566666666666665532
Q ss_pred HHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCE
Q 007984 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407 (582)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~ 407 (582)
++. +..+++|++|++++|.++.++. +..+++|++
T Consensus 258 --------------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 258 --------------------------------------------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTN 291 (466)
T ss_dssp --------------------------------------------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred --------------------------------------------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence 211 3446677888888887777665 677778888
Q ss_pred EEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccc
Q 007984 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR 487 (582)
Q Consensus 408 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 487 (582)
|++++|.+++++. +..+++|+.|++++|++.++.+ +..+++|+.|++++|.+++.
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------- 346 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--------------------- 346 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---------------------
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---------------------
Confidence 8888887777654 6777888888888887777654 56777788888887766543
Q ss_pred cCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcc
Q 007984 488 EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539 (582)
Q Consensus 488 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~ 539 (582)
..+..+++|+.|++++|++..++. +..+++|++|++++|+++.+|...
T Consensus 347 ---~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 347 ---SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred ---hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 234566778888888888876654 777888888888888777766543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.2e-34 Score=290.54 Aligned_cols=369 Identities=21% Similarity=0.252 Sum_probs=206.8
Q ss_pred cEEecCCCcCccCChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCC-CC-ccccccCCCCcEEEccCC
Q 007984 94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN 170 (582)
Q Consensus 94 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~i-~~~l~~~~~L~~L~l~~~ 170 (582)
+.++.+++.++.+|. -.++|++|++++|.+..+ +..+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345566666666665 225677777777766654 445666667777777666654 33 334666666666666666
Q ss_pred cccccchhhhcccccCcEEEccCCccCc-cch--hhcCCCCccEEeCCCCcCccC-CcC-CcCCCCCcEEEcCCCcCccc
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNLLNG-MPE--TIGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL 245 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~l~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~l~~~~i~~l 245 (582)
++..+.+..++++++|++|++++|.+.. ++. .+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6666655556666666666666665543 222 245555555555555555544 222 44555555555555554422
Q ss_pred -chhhhcc--CCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984 246 -PAELGKL--SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (582)
Q Consensus 246 -~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (582)
+..+..+ ++|+.++++++.+..++....... ....+..+++|++|++++|.+....
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-------------~~~~~~~~~~L~~L~Ls~n~l~~~~-------- 228 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-------------KCGNPFKNTSITTLDLSGNGFKESM-------- 228 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-------------HHCCTTTTCEEEEEECTTSCCCHHH--------
T ss_pred ChhhhhccccccccccccccCcccccchhhcccc-------------ccccccccceeeeEecCCCcccccc--------
Confidence 2222222 344444444444333221110000 0001223456666666666553211
Q ss_pred HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhc---cCCccEEEcCCCcCCc-----
Q 007984 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE---AGEITKLDLSRNSIQE----- 394 (582)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~---~~~L~~L~l~~~~l~~----- 394 (582)
+..+.. .++|+.+++++|....
T Consensus 229 --------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 229 --------------------------------------------------AKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp --------------------------------------------------HHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred --------------------------------------------------hhhhhccccccceeeEeeccccccccccch
Confidence 011110 1344444444442221
Q ss_pred -----CC-cccc--CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCC
Q 007984 395 -----LP-PELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466 (582)
Q Consensus 395 -----l~-~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 466 (582)
.. ..+. ..++|++|++++|.+++..+..+..+++|++|++++|.+.++.+..|..+++|++|++++|.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 00 0111 235566666666666665555566666666666666666666555566666666666666655433
Q ss_pred CCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccccccc
Q 007984 467 ENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPS 545 (582)
Q Consensus 467 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~ 545 (582)
. +..+..+++|++|++++|.++.+ |..+.++++|++|++++|+++++|+..+..+++
T Consensus 339 ~----------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 339 D----------------------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp C----------------------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred C----------------------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 2 23455667888888888888766 566788888888888888888888777666788
Q ss_pred cceeeccCCCCCc
Q 007984 546 LQALRLDGNPLRS 558 (582)
Q Consensus 546 L~~L~l~~~~~~~ 558 (582)
|+.|++++|++..
T Consensus 397 L~~L~l~~N~l~~ 409 (455)
T 3v47_A 397 LQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCCccc
Confidence 8888888888764
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-33 Score=286.33 Aligned_cols=380 Identities=22% Similarity=0.260 Sum_probs=247.9
Q ss_pred ccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCc-cC-ChhhhccCCccEEEccC
Q 007984 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS 123 (582)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~ 123 (582)
-+.++.+++.++.+|. + .++|++|+++++.++.+ +..+..+++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4578888888888876 3 37899999999999876 668889999999999999876 44 45688899999999999
Q ss_pred CcCCcC-CcccccCCCCCeEEcCCCcCCC-Cccc--cccCCCCcEEEccCCcccccchhh-hcccccCcEEEccCCccCc
Q 007984 124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNNL-IASWTMLTELIASKNLLNG 198 (582)
Q Consensus 124 ~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-i~~~--l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~l~~~~~~~ 198 (582)
|.+..+ |..+.++++|++|++++|.+.. ++.. +..+++|++|++++|++..+.+.. +..+++|++|++++|.+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 988855 6678888888888888888874 3333 777888888888888887765443 6777777777777777754
Q ss_pred cc-hhhcCC--CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhh--
Q 007984 199 MP-ETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC-- 273 (582)
Q Consensus 199 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~-- 273 (582)
++ ..+..+ .+|+.|+++++.+..++...... .....+..+++|++|++++|.+........
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence 42 333332 46667777766665443211000 000011223455555555554443222111
Q ss_pred ---cccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHh
Q 007984 274 ---QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (582)
Q Consensus 274 ---~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (582)
..+++.+++++|...........++...
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------------------------------------------------- 265 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD------------------------------------------------- 265 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-------------------------------------------------
T ss_pred cccccceeeEeeccccccccccchhhhccCc-------------------------------------------------
Confidence 1123333333332221100000000000
Q ss_pred hhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCC
Q 007984 351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429 (582)
Q Consensus 351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 429 (582)
.....-...++|+.+++++|.+..+ +..+..+++|++|++++|.+++..+..+..+++|
T Consensus 266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 0000001135678888888877764 4567788888888888888887777677888888
Q ss_pred CEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcC
Q 007984 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL 509 (582)
Q Consensus 430 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l 509 (582)
++|++++|.++++.+..|..+++|++|++++|.+++..+..+ ..+++|++|++++|++
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF----------------------LGLPNLKELALDTNQL 383 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT----------------------TTCTTCCEEECCSSCC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc----------------------cccccccEEECCCCcc
Confidence 888888888888777778888888888888887765544333 3456777777777777
Q ss_pred Cccch-hhcCCCCCCEEeCCCCcCCc
Q 007984 510 QSIPE-GFKNLTSLTELDLSDNNISA 534 (582)
Q Consensus 510 ~~l~~-~~~~l~~L~~L~l~~n~l~~ 534 (582)
+.+|. .+..+++|++|++++|+++.
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCHhHhccCCcccEEEccCCCccc
Confidence 77654 35777788888888887764
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-33 Score=283.31 Aligned_cols=352 Identities=21% Similarity=0.235 Sum_probs=208.7
Q ss_pred cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (582)
+.++++|++|+++++.++.+| .+..+++|++|++++|.++.++ +..+++|++|++++|.+..++ +..+++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 344666777777777666665 5666677777777777666653 666667777777776666654 56666677777
Q ss_pred ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCc-ccccchhhhcccccCcEEEccCCccCcc
Q 007984 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGM 199 (582)
Q Consensus 121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~~~ 199 (582)
+++|.+..++ +.++++|++|++++|.+..++ ++.+++|++|++++|+ +..+ .+..+++|++|++++|.++.+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 7766666653 566666666666666666552 5566666666666662 3333 145555566666666655555
Q ss_pred chhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccE
Q 007984 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279 (582)
Q Consensus 200 ~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 279 (582)
+ +..+++|+.|++++|.+..+ .+..+++|+.|++++|.++.+| +..+++|++|++++|.++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~------------- 246 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT------------- 246 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-------------
T ss_pred c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC-------------
Confidence 4 44555555555555555544 2455555555555555555544 444555555555555444
Q ss_pred EEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccc
Q 007984 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359 (582)
Q Consensus 280 l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 359 (582)
+++ ...+++|+.++++++.+.
T Consensus 247 ---------~~~--~~~l~~L~~L~l~~n~L~------------------------------------------------ 267 (457)
T 3bz5_A 247 ---------ELD--VSTLSKLTTLHCIQTDLL------------------------------------------------ 267 (457)
T ss_dssp ---------CCC--CTTCTTCCEEECTTCCCS------------------------------------------------
T ss_pred ---------CcC--HHHCCCCCEEeccCCCCC------------------------------------------------
Confidence 332 234555555555554432
Q ss_pred cEEEecCCCC-ccCChhhhccCCccEEEcCCCcCCc-CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCC
Q 007984 360 KELSLEGMNL-SAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437 (582)
Q Consensus 360 ~~l~l~~~~~-~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 437 (582)
.+++.+|.. ..+| ...+++|+.|++++|.... +|. ..++|+.|++ ..+++|++|++++|
T Consensus 268 -~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 268 -EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL-------------SQNPKLVYLYLNNT 328 (457)
T ss_dssp -CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC-------------TTCTTCCEEECTTC
T ss_pred -EEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech-------------hhcccCCEEECCCC
Confidence 222233321 1222 2346778888888776432 332 2344555443 34578899999999
Q ss_pred CCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC-ccchh
Q 007984 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG 515 (582)
Q Consensus 438 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~ 515 (582)
++++++ +..+++|+.|++++|.+++ ++.|..|.+..+..... ..+..|+.+++++|+++ .+|..
T Consensus 329 ~l~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 329 ELTELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---ceeeecCccccccCcEEEEcChh
Confidence 888863 7888999999999988765 35566666522221111 34566777888888777 56644
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.4e-33 Score=279.31 Aligned_cols=353 Identities=25% Similarity=0.318 Sum_probs=283.5
Q ss_pred HHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccc
Q 007984 5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84 (582)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~ 84 (582)
+...+.+++|+++++.++.+| .+. .+++|++|++++|.++.++ +..+++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~-------------~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIE-------------KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGG-------------GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhc-------------ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 456789999999999999887 332 2789999999999999885 889999999999999999884
Q ss_pred hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCC-cCCCCccccccCCCCc
Q 007984 85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMS 163 (582)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~i~~~l~~~~~L~ 163 (582)
+..+++|++|++++|.+..++ +..+++|++|++++|.++.++ +.++++|++|++++| .+..+ .+..+++|+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 889999999999999999886 889999999999999999874 788999999999999 45555 578899999
Q ss_pred EEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 243 (582)
+|++++|+++.++ +..+++|++|++++|.+..++ +..+++|+.|++++|.+..+| +..+++|+.|++++|.++
T Consensus 174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 9999999999875 788999999999999998874 788999999999999999987 889999999999999999
Q ss_pred ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccccccCCCc
Q 007984 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322 (582)
Q Consensus 244 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (582)
.++ .+.+++|+.++++.+. ++.+++++|...+ +| +..+++|+.|++++|....
T Consensus 247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~---------- 300 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY---------- 300 (457)
T ss_dssp CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC----------
T ss_pred CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccc----------
Confidence 876 5678899999988764 4566777776544 32 4678999999999986421
Q ss_pred HHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCC
Q 007984 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402 (582)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~ 402 (582)
.+......+..+. +..+++|++|++++|.++.++ +..+
T Consensus 301 --------------------------------------~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l~--l~~l 338 (457)
T 3bz5_A 301 --------------------------------------LLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHN 338 (457)
T ss_dssp --------------------------------------EEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred --------------------------------------eeccCCCcceEec--hhhcccCCEEECCCCcccccc--cccC
Confidence 1111112222221 334567888888888887764 7778
Q ss_pred CCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCC
Q 007984 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469 (582)
Q Consensus 403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 469 (582)
++|++|++++|+++++ +.|..|++++|.+.+. ..+..|..+++++|.+++..+.
T Consensus 339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 8888888888877653 4555666666665543 2445677778888887755443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5e-32 Score=265.43 Aligned_cols=305 Identities=19% Similarity=0.339 Sum_probs=191.0
Q ss_pred CCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcC
Q 007984 66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145 (582)
Q Consensus 66 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 145 (582)
.+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+.++++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 4566666776666666654 35666666666666666665544 566666666666666665553 35555666666666
Q ss_pred CCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC
Q 007984 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (582)
Q Consensus 146 ~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 225 (582)
+|.+..++. +..+++|++|++++|... .....+..+++|+.|++++|.+..++.
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNL------------------------SDLSPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTC------------------------CCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCcccCchh-hccCCceeEEECCCCCCc------------------------ccccchhhCCCCcEEEecCCCcCCchh-
Confidence 665555543 555555555555555322 222224444445555555544443322
Q ss_pred CcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEc
Q 007984 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305 (582)
Q Consensus 226 l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l 305 (582)
+..+++|++|++++|.+..++. +..+++|+.+++++|.+..........+++++++++|.+..++. +..+++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEEC
Confidence 4445555555555555554433 45555556666655555554443333345555666665555544 667777777777
Q ss_pred cCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEE
Q 007984 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385 (582)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L 385 (582)
++|.+..+ ..+..+++|++|
T Consensus 251 ~~n~l~~~------------------------------------------------------------~~~~~l~~L~~L 270 (347)
T 4fmz_A 251 GTNQISDI------------------------------------------------------------NAVKDLTKLKML 270 (347)
T ss_dssp CSSCCCCC------------------------------------------------------------GGGTTCTTCCEE
T ss_pred CCCccCCC------------------------------------------------------------hhHhcCCCcCEE
Confidence 77765321 133446788888
Q ss_pred EcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (582)
Q Consensus 386 ~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (582)
++++|.+++++ .+..+++|++|++++|.+++.....+..+++|++|++++|+++.+.+ +..+++|++|++++|.++
T Consensus 271 ~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 271 NVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888874 57788899999999998888888888889999999999999888765 778889999999988764
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.6e-32 Score=263.78 Aligned_cols=306 Identities=23% Similarity=0.339 Sum_probs=241.8
Q ss_pred cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEE
Q 007984 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (582)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 120 (582)
+..++++++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 345789999999999999886 48889999999999999998866 999999999999999998875 588999999999
Q ss_pred ccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 121 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
+++|.+..++. +..+++|++|++++|........+..+++|++|+++++.+..+.. +..+++|++|++++|.+..++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence 99999998865 889999999999999665555668999999999999999887766 778888888888888887766
Q ss_pred hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEE
Q 007984 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL 280 (582)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l 280 (582)
. +..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------------- 257 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD------------- 257 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------------
T ss_pred c-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-------------
Confidence 5 6677888888888887776544 6667777777777777776654 6666677777666665544
Q ss_pred EccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhccccccc
Q 007984 281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360 (582)
Q Consensus 281 ~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (582)
+ ..+..+++|++|++++|.+..+
T Consensus 258 ---------~-~~~~~l~~L~~L~l~~n~l~~~----------------------------------------------- 280 (347)
T 4fmz_A 258 ---------I-NAVKDLTKLKMLNVGSNQISDI----------------------------------------------- 280 (347)
T ss_dssp ---------C-GGGTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred ---------C-hhHhcCCCcCEEEccCCccCCC-----------------------------------------------
Confidence 2 2356677788888877765322
Q ss_pred EEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (582)
Q Consensus 361 ~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 439 (582)
..+..+++|++|++++|.++..+ ..+..+++|++|++++|.+++.++ +..+++|++|++++|++
T Consensus 281 -------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 281 -------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp -------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred -------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 12344677888888888877643 467888889999998888888766 78888999999988876
Q ss_pred c
Q 007984 440 R 440 (582)
Q Consensus 440 ~ 440 (582)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 5
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=257.87 Aligned_cols=307 Identities=23% Similarity=0.249 Sum_probs=198.0
Q ss_pred cCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEE
Q 007984 135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRL 212 (582)
Q Consensus 135 ~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L 212 (582)
.+++++.|+++++.+..+|.. +..+++|++|+++++.+..+....+..+++|++|++++|.+..++ ..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 346677777777777766654 566777777777777777666666666777777777776665553 345666666666
Q ss_pred eCCCCcCccCCcC-CcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984 213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290 (582)
Q Consensus 213 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 290 (582)
++++|.+..++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 181 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------------------- 181 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------------
Confidence 6666666666544 35666666666666666644 234555666666666665554321
Q ss_pred CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (582)
Q Consensus 291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (582)
+..+++|+++++++|.+..+.
T Consensus 182 ---~~~l~~L~~L~l~~n~l~~~~-------------------------------------------------------- 202 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLSTLA-------------------------------------------------------- 202 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEE--------------------------------------------------------
T ss_pred ---cccccccceeecccccccccC--------------------------------------------------------
Confidence 334566666666666543211
Q ss_pred cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (582)
Q Consensus 371 ~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 450 (582)
..++|++|++++|.+..++.. ..++|++|++++|.+++.. .+..+++|++|++++|.+.++.+..+..+
T Consensus 203 -------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 203 -------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp -------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 123567777777777665432 2467788888888777653 46778888888888888777766667778
Q ss_pred CCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCC
Q 007984 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530 (582)
Q Consensus 451 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 530 (582)
++|++|++++|.++++.. ....+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 272 ~~L~~L~L~~n~l~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNL-----------------------YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp SSCCEEECCSSCCCEEEC-----------------------SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred ccCCEEECCCCcCcccCc-----------------------ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 888888888876654321 123456677777777777777666666777777777777
Q ss_pred cCCcCCCcccccccccceeeccCCCCCc
Q 007984 531 NISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 531 ~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
+++.++ ...+++|+.|++++|++..
T Consensus 329 ~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 329 SIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred ccceeC---chhhccCCEEEcCCCCccc
Confidence 777664 2233677777777777654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=262.29 Aligned_cols=314 Identities=19% Similarity=0.252 Sum_probs=193.5
Q ss_pred ccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCC
Q 007984 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (582)
Q Consensus 116 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 194 (582)
-+.++.++..++.+|..+. ++++.|++++|.+..++ ..|..+++|++|++++|.+..+.+..+.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3567777777777776543 57788888888877653 46777888888888888877777766777777777777777
Q ss_pred ccCccch-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcccCcccccchh
Q 007984 195 LLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271 (582)
Q Consensus 195 ~~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~ 271 (582)
.+..++. .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 7776664 356677777777777776644 45566777777777777776644 34566666666666666655544322
Q ss_pred hhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhh
Q 007984 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (582)
Q Consensus 272 ~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (582)
.+..+++|+.|++++|.+..+..
T Consensus 171 ---------------------~l~~l~~L~~L~l~~n~i~~~~~------------------------------------ 193 (477)
T 2id5_A 171 ---------------------ALSHLHGLIVLRLRHLNINAIRD------------------------------------ 193 (477)
T ss_dssp ---------------------HHTTCTTCCEEEEESCCCCEECT------------------------------------
T ss_pred ---------------------HhcccCCCcEEeCCCCcCcEeCh------------------------------------
Confidence 24555666666666655432211
Q ss_pred hhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCC-cCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCC
Q 007984 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430 (582)
Q Consensus 352 ~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 430 (582)
..+..+++|++|++++|... .++.......+|++|++++|.++.++...+..+++|+
T Consensus 194 ----------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 194 ----------------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp ----------------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred ----------------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 12223455666666655432 2444444445677777777766666666666677777
Q ss_pred EeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCc
Q 007984 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNS 508 (582)
Q Consensus 431 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~ 508 (582)
.|++++|.+..+....|..+++|+.|++++|.+.++.+..|..+++|++|++ .+.+..++. .+..+++|+.|++++|.
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 7777777766666666666677777777776666555544444443333333 222222222 23344555555555555
Q ss_pred CC
Q 007984 509 LQ 510 (582)
Q Consensus 509 l~ 510 (582)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.4e-30 Score=256.41 Aligned_cols=304 Identities=19% Similarity=0.239 Sum_probs=145.1
Q ss_pred CCCcEEEcCCCCCcccchh-hhCCCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEc
Q 007984 68 PLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKA 144 (582)
Q Consensus 68 ~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l 144 (582)
++++.|+++++.++.+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4455555555555444432 3445555555555555444322 3444555555555555544432 23444555555555
Q ss_pred CCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCC
Q 007984 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (582)
Q Consensus 145 ~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 223 (582)
++|.+..++.. +..+++|++|++++|++..+.+..+..+++|++|++++|.+..++ +..+++|+.|++++|.+..+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~- 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL- 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc-
Confidence 55555544433 344555555555555555444444444455555555554444332 23344555555555444322
Q ss_pred cCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeE
Q 007984 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303 (582)
Q Consensus 224 ~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L 303 (582)
...++|+.|++++|.+..++.. ..++|++|++++| .+... ..+..+++|++|
T Consensus 202 ---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n----------------------~l~~~-~~l~~l~~L~~L 253 (390)
T 3o6n_A 202 ---AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHN----------------------NLTDT-AWLLNYPGLVEV 253 (390)
T ss_dssp ---ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSS----------------------CCCCC-GGGGGCTTCSEE
T ss_pred ---CCCCcceEEECCCCeeeecccc--ccccccEEECCCC----------------------CCccc-HHHcCCCCccEE
Confidence 1123344444444444433221 1233444444433 33332 234455555555
Q ss_pred EccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCcc
Q 007984 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383 (582)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~ 383 (582)
++++|.+..+ .+..+..+++|+
T Consensus 254 ~Ls~n~l~~~----------------------------------------------------------~~~~~~~l~~L~ 275 (390)
T 3o6n_A 254 DLSYNELEKI----------------------------------------------------------MYHPFVKMQRLE 275 (390)
T ss_dssp ECCSSCCCEE----------------------------------------------------------ESGGGTTCSSCC
T ss_pred ECCCCcCCCc----------------------------------------------------------ChhHccccccCC
Confidence 5555544221 122233344555
Q ss_pred EEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcC
Q 007984 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463 (582)
Q Consensus 384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l 463 (582)
+|++++|.++.++..+..+++|++|++++|.++.++.. +..+++|++|++++|+++.++ +..+++|+.|++++|.+
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCc
Confidence 55555555555544445555566666666655554433 445566666666666555543 44555666666666644
Q ss_pred C
Q 007984 464 S 464 (582)
Q Consensus 464 ~ 464 (582)
.
T Consensus 352 ~ 352 (390)
T 3o6n_A 352 D 352 (390)
T ss_dssp E
T ss_pred c
Confidence 3
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=7.6e-30 Score=261.16 Aligned_cols=313 Identities=20% Similarity=0.277 Sum_probs=247.4
Q ss_pred CcEEecCCCcCccCChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCC
Q 007984 93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170 (582)
Q Consensus 93 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~ 170 (582)
-+.++.+++.+..+|..+ .+++++|++++|.+..+ +..+.++++|++|++++|.+..+ +..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 457888888899998765 36899999999999977 45789999999999999999976 677999999999999999
Q ss_pred cccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccch-
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA- 247 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~~- 247 (582)
+++.++...+.++++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99999988899999999999999999765 46788999999999999998865 5689999999999999999997764
Q ss_pred hhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc-ccccccCCCcHHHH
Q 007984 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT-LRSSLVNGPTPALL 326 (582)
Q Consensus 248 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~ 326 (582)
.+..+++|+.|++++|.+..+... .+..+++|++|++++|.... ++...+
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~-------- 221 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDY---------------------SFKRLYRLKVLEISHWPYLDTMTPNCL-------- 221 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTT---------------------CSCSCTTCCEEEEECCTTCCEECTTTT--------
T ss_pred HhcccCCCcEEeCCCCcCcEeChh---------------------hcccCcccceeeCCCCccccccCcccc--------
Confidence 588999999999999887764332 34556666667666654321 110000
Q ss_pred HHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCC
Q 007984 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCAS 404 (582)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~ 404 (582)
...+++.+++.++.+..++. .+..+++|++|++++|.++.++. .+..+++
T Consensus 222 ----------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 222 ----------------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp ----------------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred ----------------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 01245566666666666664 34457788888888888777654 5777888
Q ss_pred CCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (582)
Q Consensus 405 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (582)
|++|++++|.++++....|..+++|+.|++++|.++.++...|..+++|+.|++++|.+.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 888888888888777777788888888888888888877777778888888888888664
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.4e-29 Score=261.87 Aligned_cols=305 Identities=23% Similarity=0.257 Sum_probs=177.4
Q ss_pred cCCCCCeEEcCCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch-hhcCCCCccEE
Q 007984 135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRL 212 (582)
Q Consensus 135 ~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L 212 (582)
.+.+++.++++++.+..+|.. +..+++|++|++++|.+..+.+..++.+++|++|++++|.+..++. .+..+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356777777777777777654 5667778888887777777776667777777777777777766543 45677777777
Q ss_pred eCCCCcCccCCcC-CcCCCCCcEEEcCCCcCcccc-hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCC
Q 007984 213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290 (582)
Q Consensus 213 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 290 (582)
++++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 187 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------------------- 187 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------------------
Confidence 7777777766554 467777777777777776543 35666777777777776665432
Q ss_pred CccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc
Q 007984 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370 (582)
Q Consensus 291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 370 (582)
+..+++|+.+++++|.+..+.
T Consensus 188 ---~~~l~~L~~L~l~~n~l~~l~-------------------------------------------------------- 208 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYNLLSTLA-------------------------------------------------------- 208 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEE--------------------------------------------------------
T ss_pred ---hhhhhhhhhhhcccCcccccc--------------------------------------------------------
Confidence 233455555555555442210
Q ss_pred cCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (582)
Q Consensus 371 ~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 450 (582)
..++|++|++++|.+..++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+.++.+..|..+
T Consensus 209 -------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 209 -------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp -------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 0123455555555554443221 24555555555555543 224555556666665555555544455555
Q ss_pred CCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCC
Q 007984 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 529 (582)
Q Consensus 451 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 529 (582)
++|+.|++++|.++++. ..+..+++|+.|++ .+.+..++..+..+++|+.|++++|.+..++ +..+++|++|++++
T Consensus 278 ~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 278 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp SSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 56666666655554431 11222332222222 2222233444555566666666666666553 44556666666666
Q ss_pred CcCC
Q 007984 530 NNIS 533 (582)
Q Consensus 530 n~l~ 533 (582)
|.++
T Consensus 355 N~~~ 358 (597)
T 3oja_B 355 NDWD 358 (597)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 6554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.8e-29 Score=260.94 Aligned_cols=171 Identities=18% Similarity=0.266 Sum_probs=81.7
Q ss_pred CCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEc
Q 007984 68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA 144 (582)
Q Consensus 68 ~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l 144 (582)
.+++.++++++.+..+|. .+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 445555555555554443 2344555555555555555432 244555555555555555554432 3345555555555
Q ss_pred CCCcCCCCccc-cccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCC
Q 007984 145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223 (582)
Q Consensus 145 ~~~~~~~i~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 223 (582)
++|.+..++.. |..+++|++|++++|.+..+.+..++.+++|++|++++|.+..++ +..+++|+.|++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence 55555544433 345555555555555555544444455555555555555444432 23344555555555444322
Q ss_pred cCCcCCCCCcEEEcCCCcCcc
Q 007984 224 SSISGCCSLAEFYMGNNALSA 244 (582)
Q Consensus 224 ~~l~~~~~L~~L~l~~~~i~~ 244 (582)
...++|+.|++++|.+..
T Consensus 208 ---~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 208 ---AIPIAVEELDASHNSINV 225 (597)
T ss_dssp ---ECCTTCSEEECCSSCCCE
T ss_pred ---cCCchhheeeccCCcccc
Confidence 122334444444444443
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.8e-28 Score=235.73 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=60.4
Q ss_pred ccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhC------CCCCCEeeCCCCCCcc--CCCccccC
Q 007984 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS------LSSLSCLKLDNNPLRQ--VPSDGFKD 449 (582)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~------l~~L~~L~l~~~~l~~--~~~~~~~~ 449 (582)
.+++|++|++++|.++.+|..+..+++|++|++++|.+++++...|.. .++|+.+++++|++.. +.+..|..
T Consensus 238 ~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp GSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 356677777777777777777777778888888888777776665543 3778888888888764 66667888
Q ss_pred CCCCcEEeCCCCc
Q 007984 450 IPMLQILDLSYNI 462 (582)
Q Consensus 450 ~~~L~~L~l~~n~ 462 (582)
+.+++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 8888888888773
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.2e-31 Score=271.78 Aligned_cols=381 Identities=20% Similarity=0.184 Sum_probs=226.2
Q ss_pred CCCcEEecCCCcCccC--ChhhhccCCccEEEccCCcCC-----cCCcccccCCCCCeEEcCCCcCCCC-ccc-cccCC-
Q 007984 91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL-PED-LADCS- 160 (582)
Q Consensus 91 ~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~i-~~~-l~~~~- 160 (582)
++|++|+++++.+... ...+..+++|++|++++|.+. .++..+..+++|++|++++|.+... +.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3455666666555532 122445556666666655554 2233444445555555555544321 111 11122
Q ss_pred ---CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC-----CcC-CcCCCC
Q 007984 161 ---KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-----PSS-ISGCCS 231 (582)
Q Consensus 161 ---~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~-l~~~~~ 231 (582)
+|++|++++|+++..+.. .++..+..+++|+.|++++|.+... ... ....++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCG-------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH-------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHH-------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 344444444444422100 2234455556666666666655411 111 223456
Q ss_pred CcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCcccccchhhh-------cccccEEEccCCCCCC-----CCccc
Q 007984 232 LAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEI 294 (582)
Q Consensus 232 L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~L~~l~l~~~~l~~-----~~~~l 294 (582)
|++|++++|.++. ++..+..+++|++|++++|.+........ ..+++++++++|.+.. ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 6677777666663 34556667788888888777665333222 1257777777776665 34556
Q ss_pred cCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCCh
Q 007984 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374 (582)
Q Consensus 295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~ 374 (582)
..+++|++|++++|.+..... ..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~------------------------------------------------------~~l~~ 249 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGM------------------------------------------------------AELCP 249 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHH------------------------------------------------------HHHHH
T ss_pred HhCCCccEEeccCCcCChHHH------------------------------------------------------HHHHH
Confidence 678888888888887642110 01111
Q ss_pred hhh-ccCCccEEEcCCCcCCc-----CCccccCCCCCCEEEcccCcCCCCChHHhhC-----CCCCCEeeCCCCCCccCC
Q 007984 375 EIW-EAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP 443 (582)
Q Consensus 375 ~~~-~~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~ 443 (582)
.+. .+++|++|++++|.++. ++..+..+++|++|++++|.+++.....+.. .++|++|++++|.++...
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 111 35678888888888876 5666777888999999888876644433332 368999999998887643
Q ss_pred ----CccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhh-ccCCCCEEecCCCcCC-----ccc
Q 007984 444 ----SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL-RLQQLRILDLSQNSLQ-----SIP 513 (582)
Q Consensus 444 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~-----~l~ 513 (582)
+..+..+++|++|++++|.+++... ..+...+. ..++|++|++++|.++ .+|
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGV------------------RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHH------------------HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccH------------------HHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 2235667889999999887643211 01111222 2579999999999998 577
Q ss_pred hhhcCCCCCCEEeCCCCcCCcCCCc-----ccccccccceeeccCCCCCcchHH
Q 007984 514 EGFKNLTSLTELDLSDNNISALPPE-----LGLLEPSLQALRLDGNPLRSIRRT 562 (582)
Q Consensus 514 ~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~~~~L~~L~l~~~~~~~~~~~ 562 (582)
..+..+++|++|++++|+++..... +......|+.|++.++.+.....+
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred HHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 8888999999999999998843211 112225799999999887754433
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.2e-28 Score=236.41 Aligned_cols=287 Identities=22% Similarity=0.292 Sum_probs=204.3
Q ss_pred ccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEcc
Q 007984 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH 261 (582)
Q Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~ 261 (582)
.+++.++++++.+..+|..+. ++++.|++++|.+..+ +..+..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367777887777777776553 6788888888888766 45788888888888888888865 6678888888888888
Q ss_pred cCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccc
Q 007984 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (582)
Q Consensus 262 ~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (582)
+|.+..++.... .+|+++++++|.+..++.. +.++++|++|++++|.+...+
T Consensus 111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------- 163 (332)
T 2ft3_A 111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-------------------------- 163 (332)
T ss_dssp SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------------
T ss_pred CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------------
Confidence 888887766544 5688888888888877654 778888888888888764211
Q ss_pred cccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCCh
Q 007984 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420 (582)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~ 420 (582)
..+..+... +|++|++++|.++.+|..+. ++|++|++++|.+++.+.
T Consensus 164 ------------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 164 ------------------------------FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp ------------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT
T ss_pred ------------------------------CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH
Confidence 011112222 67777777777777765443 567777777777777766
Q ss_pred HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCC
Q 007984 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500 (582)
Q Consensus 421 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~ 500 (582)
..+..+++|++|++++|.+..+....+..+++|++|++++|.++. ++..+..+++|+
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------lp~~l~~l~~L~ 267 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-----------------------VPAGLPDLKLLQ 267 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-----------------------CCTTGGGCTTCC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-----------------------cChhhhcCccCC
Confidence 666777777777777777777766667777777777777776542 233455678888
Q ss_pred EEecCCCcCCccchh-hcC------CCCCCEEeCCCCcCC--cCCCcccccccccceeeccCCC
Q 007984 501 ILDLSQNSLQSIPEG-FKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 555 (582)
Q Consensus 501 ~L~l~~~~l~~l~~~-~~~------l~~L~~L~l~~n~l~--~l~~~~~~~~~~L~~L~l~~~~ 555 (582)
.|++++|.++.++.. |.. .+.|+.|++++|.++ .+++..+..+++|+.+++++|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888876532 332 366888888888877 6777777777888888888874
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.2e-28 Score=236.32 Aligned_cols=280 Identities=21% Similarity=0.299 Sum_probs=213.7
Q ss_pred hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chhh
Q 007984 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI 87 (582)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~~ 87 (582)
.++.++++++.++.+|..+ .+++++|+++++.++.++. .|..+++|++|++++|.+..+ |..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---------------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccC---------------CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 5777888888888888655 3568888888888887764 688888888888888888866 6678
Q ss_pred hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCC---CCccccccCCCCc
Q 007984 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS 163 (582)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~---~i~~~l~~~~~L~ 163 (582)
..+++|++|++++|.+..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.+. ..+..+..+++|+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 888888888888888887776554 788888888888886654 5678888888888888775 3455678888888
Q ss_pred EEEccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCC-cCCcCCCCCcEEEcCCCc
Q 007984 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 241 (582)
Q Consensus 164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 241 (582)
+|++++|.++.++.... ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus 175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 88888888887765422 7888888888888765 467778888888888888887654 367788888888888888
Q ss_pred CcccchhhhccCCCcEEEcccCcccccchhhhc--------ccccEEEccCCCCCC---CCccccCCCCCCeEEccCCC
Q 007984 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP 309 (582)
Q Consensus 242 i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--------~~L~~l~l~~~~l~~---~~~~l~~~~~L~~L~l~~~~ 309 (582)
+..+|..+..+++|++|++++|.++.++...+. ..++.+++++|.+.. .+..+..+.+++.+++++|+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888888888888888877655432 337788888887654 33457777888888887763
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.7e-30 Score=261.91 Aligned_cols=248 Identities=18% Similarity=0.222 Sum_probs=179.6
Q ss_pred hhcCceecCCCCCCCcchH-HHhhhccccCCCccccccCccEEEcCCCCcc-----chhHhhcCCCCCcEEEcCCCCCcc
Q 007984 9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE 82 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~-----~~~~~~~~~~~L~~L~L~~~~~~~ 82 (582)
+.+++|+++++++...+.. ++.. +++|++|++++|.++ .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 4577889988887754422 2333 778999999999887 456778888999999999988874
Q ss_pred c-ch-hhhCCC----CCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCCcC-Cc----c-cccCCCCCeEEcC
Q 007984 83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-PS----S-LGRCLNLSDFKAS 145 (582)
Q Consensus 83 l-~~-~~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~l-~~----~-~~~~~~L~~L~l~ 145 (582)
. +. ....++ +|++|++++|.+. .++..+..+++|++|++++|.+... +. . ....++|++|+++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 150 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence 2 22 233444 6999999999887 3466778888999999998887632 11 1 2235679999999
Q ss_pred CCcCCC-----CccccccCCCCcEEEccCCcccccchhhhc-----ccccCcEEEccCCccCc-----cchhhcCCCCcc
Q 007984 146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI 210 (582)
Q Consensus 146 ~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~ 210 (582)
+|.+.. ++..+..+++|++|++++|.+.+.....+. ..++|++|++++|.+.. ++..+..+++|+
T Consensus 151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 988774 355677788999999998887755444333 25588888888888765 456677788888
Q ss_pred EEeCCCCcCccC------CcCCcCCCCCcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCccccc
Q 007984 211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 211 ~L~l~~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~~ 268 (582)
+|++++|.+... +..+..+++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 888888877632 2233457888888888888874 566777788888888888877643
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.4e-28 Score=236.22 Aligned_cols=283 Identities=23% Similarity=0.328 Sum_probs=165.7
Q ss_pred ccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCC
Q 007984 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (582)
Q Consensus 116 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 194 (582)
++.++++++.+..+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|+++.+.+..++.+++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4444444444444443332 34555555555544432 23555555555555555555554444555555555555555
Q ss_pred ccCccchhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc---ccchhhhccCCCcEEEcccCcccccch
Q 007984 195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYCV 270 (582)
Q Consensus 195 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~---~l~~~l~~~~~L~~L~l~~~~~~~~~~ 270 (582)
.+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.++ ..+..+..+ +|++|++++|.++.++.
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 5555544333 556666666666555443 3555666666666666554 223344444 66666666666655444
Q ss_pred hhhcccccEEEccCCCCCCCC-ccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHH
Q 007984 271 EACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349 (582)
Q Consensus 271 ~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (582)
... .+++++++++|.+..++ ..+..+++|++|++++|.+..+.
T Consensus 190 ~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----------------------------------- 233 (332)
T 2ft3_A 190 DLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----------------------------------- 233 (332)
T ss_dssp SSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-----------------------------------
T ss_pred ccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-----------------------------------
Confidence 322 34666666666666644 34667777777777777653221
Q ss_pred hhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhC----
Q 007984 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS---- 425 (582)
Q Consensus 350 ~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~---- 425 (582)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|.+++++...|..
T Consensus 234 -----------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 234 -----------------------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp -----------------------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred -----------------------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 12344567788888888888888777778888888888888887776665554
Q ss_pred --CCCCCEeeCCCCCCc--cCCCccccCCCCCcEEeCCCCc
Q 007984 426 --LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 426 --l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
.++|+.|++++|++. .+.+.+|..+++|+.+++++|+
T Consensus 291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356778888888776 5666667777888888877763
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-28 Score=258.65 Aligned_cols=434 Identities=13% Similarity=0.065 Sum_probs=253.6
Q ss_pred cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc----c------------cchhhhCCCCCcEEecCCCcCcc-CChhh
Q 007984 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEI 110 (582)
Q Consensus 48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~----~------------l~~~~~~~~~L~~L~l~~~~~~~-l~~~~ 110 (582)
+.+.+..+.-...+..+.++++|++|+++++... . +......+++|++|++++|.+.. .+..+
T Consensus 53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 3444443322233445677888888888775321 1 11223478889999998887652 22333
Q ss_pred hc-cCC-ccEEEccCCcC-C--cCCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccc----
Q 007984 111 GS-ATA-LVKFDCSSNQL-K--ELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLS---- 176 (582)
Q Consensus 111 ~~-~~~-L~~L~l~~~~~-~--~l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~---- 176 (582)
.. +++ |++|++++|.. . .++....++++|++|++++|.+.. ++.....+++|++|+++++.+..+.
T Consensus 133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 33 344 88898888762 2 223334578889999998887653 2334567888999999888876333
Q ss_pred hhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc----cCCcCCcCCCCCcEEEcCCCcCcccchhhhcc
Q 007984 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKL 252 (582)
Q Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~ 252 (582)
...+..+++|++|++++|.+..++..+..+++|+.|+++..... .....+..+++|+.+.++++....++..+..+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 22356778899999988888888888888888999988754322 33456677888888888877666777777788
Q ss_pred CCCcEEEcccCcccccchh---hhcccccEEEccCCCCCC--CCccccCCCCCCeEEccC-C--CCccccccccCCCcHH
Q 007984 253 SKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTG-N--PLRTLRSSLVNGPTPA 324 (582)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~l~l~~~~l~~--~~~~l~~~~~L~~L~l~~-~--~~~~~~~~~~~~~~~~ 324 (582)
++|++|++++|.++..... ....+|+.|+++++ +.. ++.....+++|++|++++ . +... ..
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~---~~------- 361 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGME---DE------- 361 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTS---ST-------
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccc---cc-------
Confidence 8888888888775432221 11222444444311 111 111123344444444441 0 0000 00
Q ss_pred HHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCc--cCChhhhccCCccEEEcCCCcCCc-CCcccc-
Q 007984 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS- 400 (582)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~-l~~~l~- 400 (582)
.+.++ .+......+++|++|+++.+.+++ .+..++
T Consensus 362 -----------------------------------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 362 -----------------------------------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp -----------------------------------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred -----------------------------------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 01111 111122235677777776666554 222233
Q ss_pred CCCCCCEEEcc----cCcCCCCCh-----HHhhCCCCCCEeeCCCCC--CccCCCccc-cCCCCCcEEeCCCCcCCCCCC
Q 007984 401 SCASLQTLILS----RNKIKDWPD-----AILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSYNIASLPEN 468 (582)
Q Consensus 401 ~~~~L~~L~l~----~~~l~~~~~-----~~l~~l~~L~~L~l~~~~--l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 468 (582)
.+++|++|+++ .+.+++.+. ..+.++++|++|++++|. +++.....+ ..+++|++|++++|.+++.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-- 478 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-- 478 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH--
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH--
Confidence 36677777775 445555421 224557777777776543 333211112 3366677777776654321
Q ss_pred CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCCcCCcCCC-cccccccc
Q 007984 469 PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPP-ELGLLEPS 545 (582)
Q Consensus 469 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~~ 545 (582)
.++..+..+++|++|++++|.++. ++.....+++|++|++++|+++.... .+...+|.
T Consensus 479 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 479 -------------------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp -------------------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred -------------------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 112334567888888888888762 44445678888889998888774322 23334466
Q ss_pred cceeeccCC
Q 007984 546 LQALRLDGN 554 (582)
Q Consensus 546 L~~L~l~~~ 554 (582)
+....+..+
T Consensus 540 l~~~~~~~~ 548 (592)
T 3ogk_B 540 WNIELIPSR 548 (592)
T ss_dssp EEEEEECCC
T ss_pred cEEEEecCc
Confidence 766666554
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.9e-25 Score=230.23 Aligned_cols=259 Identities=30% Similarity=0.373 Sum_probs=230.2
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 88 (582)
..++.++++++.++.+|..+ .++|++|++++|.++.+|. .+++|++|+|++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l---------------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL---------------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC---------------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCcCccChhh---------------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence 35889999999999999866 3689999999999998876 57899999999999999877
Q ss_pred CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~ 168 (582)
.+++|++|++++|.+..+|. .+++|++|++++|.++.+|.. +++|++|++++|.+..++. ..++|+.|+++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999999999877 678999999999999988864 4899999999999998875 35789999999
Q ss_pred CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (582)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~ 248 (582)
+|.++.++ ..+++|+.|++++|.+..++.. .++|+.|++++|.+..++.. +++|+.|++++|.++.+|
T Consensus 170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence 99999877 4578999999999999988753 47999999999999988754 488999999999999988
Q ss_pred hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (582)
Q Consensus 249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (582)
..+++|++|++++|.++.++. ...+|+.|++++|.++.+|..+..+++|+.|++++|+++.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 456899999999999998877 5567999999999999999999999999999999999864
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=9.2e-28 Score=253.06 Aligned_cols=414 Identities=15% Similarity=0.107 Sum_probs=217.2
Q ss_pred EEEcCCCCCcccchhhhCCCCCcEEecCCCcCc----cCChh------------hhccCCccEEEccCCcCCcC-Ccccc
Q 007984 72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM----KIPDE------------IGSATALVKFDCSSNQLKEL-PSSLG 134 (582)
Q Consensus 72 ~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----~l~~~------------~~~~~~L~~L~l~~~~~~~l-~~~~~ 134 (582)
.+.+.++.-...+..+..+++|++|+++++... .+|.. ...+++|++|++++|.+... +..+.
T Consensus 54 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~ 133 (592)
T 3ogk_B 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133 (592)
T ss_dssp EEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred EEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence 344444322233345677888999999775321 11211 12566777777776655421 12222
Q ss_pred c-CCC-CCeEEcCCCcC-C--CCccccccCCCCcEEEccCCcccccch----hhhcccccCcEEEccCCccCc-----cc
Q 007984 135 R-CLN-LSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNG-----MP 200 (582)
Q Consensus 135 ~-~~~-L~~L~l~~~~~-~--~i~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~-----~~ 200 (582)
. +++ |++|++++|.. . .++.....+++|++|++++|.+.+.+. .....+++|++|+++++.+.. ++
T Consensus 134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 2 233 66666666641 1 122223355666666666665543321 123445555555555555431 22
Q ss_pred hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc----ccchhhhccCCCcEEEcccCcccccchhhhccc
Q 007984 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (582)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 276 (582)
..+..+++|+.|++++|.+..++..+..+++|++|.++..... ..+..+..+++|+.+++
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l---------------- 277 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL---------------- 277 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE----------------
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc----------------
Confidence 2334455555555555555444444444555555555432111 11223334444444444
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhccc
Q 007984 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (582)
Q Consensus 277 L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (582)
+++....++..+..+++|++|++++|.+.... ........
T Consensus 278 ------~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~----------------------------------~~~~~~~~ 317 (592)
T 3ogk_B 278 ------SYMGPNEMPILFPFAAQIRKLDLLYALLETED----------------------------------HCTLIQKC 317 (592)
T ss_dssp ------TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH----------------------------------HHHHHTTC
T ss_pred ------cccchhHHHHHHhhcCCCcEEecCCCcCCHHH----------------------------------HHHHHHhC
Confidence 44333334444455555555555555432100 00001112
Q ss_pred ccccEEEecCCCCc-cCChhhhccCCccEEEcCC-----------CcCCc--CCccccCCCCCCEEEcccCcCCCCChHH
Q 007984 357 VTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDWPDAI 422 (582)
Q Consensus 357 ~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~-----------~~l~~--l~~~l~~~~~L~~L~l~~~~l~~~~~~~ 422 (582)
.+++.+++.++... .++.....+++|++|++++ +.++. +......+++|++|+++.+.+++.....
T Consensus 318 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 23333333311101 1222223466777777773 34433 2223345777888888777776654444
Q ss_pred hhC-CCCCCEeeCC----CCCCccCCCc-----cccCCCCCcEEeCCCCc--CCCCCCCCCCCCccchhhhhccccccCc
Q 007984 423 LTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPFSSLPHLQELYLRMQLREAP 490 (582)
Q Consensus 423 l~~-l~~L~~L~l~----~~~l~~~~~~-----~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 490 (582)
+.. +++|++|+++ .+.+++.+.. .+..+++|++|+++.|. +++ ...
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~----------------------~~~ 455 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD----------------------LGL 455 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH----------------------HHH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH----------------------HHH
Confidence 544 7778888775 4455543211 14456777777776432 111 111
Q ss_pred hh-hhccCCCCEEecCCCcCCc--cchhhcCCCCCCEEeCCCCcCCcC-CCcccccccccceeeccCCCCCcchHHH
Q 007984 491 TD-ILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNPLRSIRRTI 563 (582)
Q Consensus 491 ~~-~~~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 563 (582)
.. ...+++|+.|++++|.++. ++..+.++++|++|++++|+++.. .......+++|+.|++++|+++..+...
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence 12 2347899999999999874 556678899999999999998732 2233344599999999999987754433
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.2e-25 Score=227.27 Aligned_cols=117 Identities=28% Similarity=0.338 Sum_probs=69.9
Q ss_pred cCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCC
Q 007984 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124 (582)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 124 (582)
.++++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 356677777776666665443 566677776666666654 45666666666666666654 4566666666666
Q ss_pred cCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCccccc
Q 007984 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175 (582)
Q Consensus 125 ~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~ 175 (582)
.++.+|. .+++|+.|++++|.+..+|.. +++|++|++++|+++.+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCc
Confidence 6665554 345566666666655555442 24555555555554443
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.4e-25 Score=215.20 Aligned_cols=242 Identities=25% Similarity=0.342 Sum_probs=200.8
Q ss_pred cCccEEEcCCCCcc---chhHhhcCCCCCcEEEcCC-CCCc-ccchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccE
Q 007984 45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK 118 (582)
Q Consensus 45 ~~l~~L~l~~~~i~---~~~~~~~~~~~L~~L~L~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~ 118 (582)
.++++|+++++.+. .+|..+.++++|++|++++ +.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57899999999888 5788899999999999995 7776 67888999999999999999988 77888999999999
Q ss_pred EEccCCcCC-cCCcccccCCCCCeEEcCCCcCC-CCccccccCC-CCcEEEccCCcccccchhhhcccccCcEEEccCCc
Q 007984 119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195 (582)
Q Consensus 119 L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 195 (582)
|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..++ +|++|++++|++....+..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999988 67888889999999999999988 7888888887 899999999988866666677776 9999999998
Q ss_pred cC-ccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccccchhhh
Q 007984 196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273 (582)
Q Consensus 196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 273 (582)
+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~----- 283 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE----- 283 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-----
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-----
Confidence 86 4566788888999999999888865556778888999999988888 7788888888888888888877632
Q ss_pred cccccEEEccCCCCCCCCccccCCCCCCeEEccCCC
Q 007984 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (582)
Q Consensus 274 ~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~ 309 (582)
+|. ...+++|+.+++++|+
T Consensus 284 ----------------ip~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 ----------------IPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------------CCC-STTGGGSCGGGTCSSS
T ss_pred ----------------CCC-CccccccChHHhcCCC
Confidence 222 2456677777777776
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=219.18 Aligned_cols=266 Identities=20% Similarity=0.294 Sum_probs=194.4
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc-chh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l-~~~ 86 (582)
+....++++++.++.+|..+ .++|++|+++++.++.++. .|..+++|++|++++|.++.+ +..
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~---------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCeEeeCCCCCcccccccc---------------cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence 44556788888888888766 3568888888888887765 688888888888888888866 446
Q ss_pred hhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCcCCc--ccccCCCCCeEEcCCC-cCCCC-ccccccCCC
Q 007984 87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSK 161 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~-~~~~i-~~~l~~~~~ 161 (582)
+..+++|++|++++|.+..++.. +..+++|++|++++|.+..++. .+.++++|++|++++| .+..+ +..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 88888888888888888888765 7788888888888888887765 6778888888888888 35555 345778888
Q ss_pred CcEEEccCCcccccchhhhcccccCcEEEccCCccCccchh-hcCCCCccEEeCCCCcCccCCc----CCcCCCCCcEEE
Q 007984 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY 236 (582)
Q Consensus 162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~ 236 (582)
|++|++++|.+..+.+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+..++. ....+..++.++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 88888888888877777788888888888888888776654 3347788888888887775431 122344555566
Q ss_pred cCCCcCc-----ccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCC
Q 007984 237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL 310 (582)
Q Consensus 237 l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~ 310 (582)
++++.+. .+|..+..+++|++|++++|. ++.++.. +..+++|++|++++|++
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~----------------------l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQ----------------------LKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCC----------------------CCccCHHHHhcCCCCCEEEeeCCCc
Confidence 5555544 234445555555555555554 4445544 47788899999999887
Q ss_pred c
Q 007984 311 R 311 (582)
Q Consensus 311 ~ 311 (582)
.
T Consensus 314 ~ 314 (353)
T 2z80_A 314 D 314 (353)
T ss_dssp C
T ss_pred c
Confidence 5
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=8.8e-26 Score=216.63 Aligned_cols=241 Identities=24% Similarity=0.365 Sum_probs=215.6
Q ss_pred hhcCceecCCCCCC---CcchHHHhhhccccCCCccccccCccEEEcCC-CCcc-chhHhhcCCCCCcEEEcCCCCCc-c
Q 007984 9 RTSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLS-E 82 (582)
Q Consensus 9 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~-~~i~-~~~~~~~~~~~L~~L~L~~~~~~-~ 82 (582)
..++.|+++++.+. .+|..+. .+++|++|++++ +.+. .+|..|..+++|++|++++|.+. .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-------------~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-------------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-------------GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCCcccChhHh-------------CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 45778888888877 4665443 389999999995 7777 67889999999999999999998 7
Q ss_pred cchhhhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCCcCC-cCCcccccCC-CCCeEEcCCCcCC-CCcccccc
Q 007984 83 LPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158 (582)
Q Consensus 83 l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~l~~~~~~-~i~~~l~~ 158 (582)
+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+. .++..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 8889999999999999999998 67889999999999999999998 8888899988 9999999999998 77888888
Q ss_pred CCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEc
Q 007984 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM 237 (582)
Q Consensus 159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l 237 (582)
++ |++|++++|.+....+..+..+++|+.|++++|.+...+..+..+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 87 99999999999988888899999999999999999876666888999999999999998 78889999999999999
Q ss_pred CCCcCc-ccchhhhccCCCcEEEcccCc
Q 007984 238 GNNALS-ALPAELGKLSKLGTLDLHSNQ 264 (582)
Q Consensus 238 ~~~~i~-~l~~~l~~~~~L~~L~l~~~~ 264 (582)
++|.+. .+|.. ..+++|+.+++.+|.
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCCC-ccccccChHHhcCCC
Confidence 999999 66654 788999999999887
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3e-25 Score=214.19 Aligned_cols=223 Identities=21% Similarity=0.270 Sum_probs=184.3
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
..++++|+++++.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 36888999999988888888888899999999999888888888889999999999998888888888899999999988
Q ss_pred CcCC-cCCcccc---------cCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccC
Q 007984 124 NQLK-ELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193 (582)
Q Consensus 124 ~~~~-~l~~~~~---------~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 193 (582)
|.+. .+|..+. ++++|++|++++|.+..+|..+..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcC
Confidence 6543 6665544 48889999999888888888888888999999988888877664 88888889999888
Q ss_pred Ccc-CccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEEcCCCcCc-ccchhhhccCCCcEEEcccCcccc
Q 007984 194 NLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE 267 (582)
Q Consensus 194 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~ 267 (582)
|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 765 456777888888999999887655 67778888888889998887665 788888888888888887765544
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=219.93 Aligned_cols=277 Identities=19% Similarity=0.245 Sum_probs=160.0
Q ss_pred cccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCccc-chhhhccCCCcEEEc
Q 007984 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL 260 (582)
Q Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l 260 (582)
|+.....+.+++.++.+|..+. ++|+.|++++|.+..++. .+..+++|++|++++|.++.+ +..+..+++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4444455666666666665443 466666666666665543 566666666666666666644 334556666666666
Q ss_pred ccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccc
Q 007984 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340 (582)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (582)
++|.++.++... +.++++|++|++++|.+..++.
T Consensus 108 s~n~l~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~l~~------------------------- 141 (353)
T 2z80_A 108 SYNYLSNLSSSW---------------------FKPLSSLTFLNLLGNPYKTLGE------------------------- 141 (353)
T ss_dssp CSSCCSSCCHHH---------------------HTTCTTCSEEECTTCCCSSSCS-------------------------
T ss_pred CCCcCCcCCHhH---------------------hCCCccCCEEECCCCCCcccCc-------------------------
Confidence 665555443321 4445555555555554432210
Q ss_pred cccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCC-cCCcCC-ccccCCCCCCEEEcccCcCCCC
Q 007984 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELP-PELSSCASLQTLILSRNKIKDW 418 (582)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~-~~l~~~~~L~~L~l~~~~l~~~ 418 (582)
...+..+++|++|++++| .+..++ ..+..+++|++|++++|.+++.
T Consensus 142 --------------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 142 --------------------------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp --------------------------------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred --------------------------------hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 001223445555555555 244432 2455556666666666666555
Q ss_pred ChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCC
Q 007984 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQ 498 (582)
Q Consensus 419 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 498 (582)
.+..+..+++|++|++++|.+..++...+..+++|+.|++++|.+++.....+.. ....+.
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~~~~~~ 250 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------------GETNSL 250 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCC
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------------ccccch
Confidence 4555566666666666666655554443445566666666666655443221111 112344
Q ss_pred CCEEecCCCcCC-----ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 499 LRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 499 L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
++.+++.++.+. .+|..+.++++|++|++++|+++.+|..++..+++|++|++++|++..
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 555555555544 467778888889999999998888888877667889999999998765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=4e-25 Score=212.06 Aligned_cols=240 Identities=23% Similarity=0.282 Sum_probs=155.3
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCccc---chhh
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI 87 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l---~~~~ 87 (582)
..+++++..++.+|..+ .+++++|+++++.++.++. .|.++++|++|++++|.+..+ +..+
T Consensus 10 ~~l~c~~~~l~~ip~~~---------------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp TEEECCSSCCSSCCSCC---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CEEEcCCCCcccCCCCC---------------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence 45777777777777655 3467888888877777765 467777888888877777644 4566
Q ss_pred hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc--ccccCCCCCeEEcCCCcCCC-CccccccCCCCcE
Q 007984 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMSK 164 (582)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~ 164 (582)
..+++|++|++++|.+..++..+..+++|++|++++|.+..++. .+.++++|++|++++|.+.. .+..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 66777777777777777776667777777777777777766543 56667777777777776653 3344666677777
Q ss_pred EEccCCcccc-cchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCc
Q 007984 165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA 241 (582)
Q Consensus 165 L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 241 (582)
|++++|.+.. ..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 7777666654 3333466666666666666666554 3455566666666666666655432 45556666666666666
Q ss_pred Ccc-cchhhhcc-CCCcEEEcccCccc
Q 007984 242 LSA-LPAELGKL-SKLGTLDLHSNQLK 266 (582)
Q Consensus 242 i~~-l~~~l~~~-~~L~~L~l~~~~~~ 266 (582)
+.. .+..+..+ ++|++|++++|.+.
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCee
Confidence 653 23444444 25666666666554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=4.4e-25 Score=211.77 Aligned_cols=245 Identities=25% Similarity=0.294 Sum_probs=157.0
Q ss_pred EEEcccCcccccchhhhcccccEEEccCCCCCCCCcc-ccCCCCCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCC
Q 007984 257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (582)
Q Consensus 257 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (582)
.++.+++.++.++... +.+++++++++|.+..++.. +..+++|++|++++|.+..++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------- 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------- 68 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence 3444444444444322 23456666666666665554 567788888888887764221
Q ss_pred CCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcC
Q 007984 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415 (582)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l 415 (582)
..+..+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus 69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence 112233345566666666666666555566666666666666666
Q ss_pred CCCCh-HHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCC-CCCCCCCCCccchhhhh-ccccccC-ch
Q 007984 416 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREA-PT 491 (582)
Q Consensus 416 ~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l-~~~~~~~-~~ 491 (582)
++++. ..+..+++|++|++++|.+..+....+..+++|++|++++|.+.+ ..+..+..+++|++|++ .+.+... +.
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 55543 345566666666666666665555556666666666666666554 33445666666666666 4444443 44
Q ss_pred hhhccCCCCEEecCCCcCCccch-hhcCCCCCCEEeCCCCcCCcCCCcccccc-cccceeeccCCCCCc
Q 007984 492 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRS 558 (582)
Q Consensus 492 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~-~~L~~L~l~~~~~~~ 558 (582)
.+..+++|+.|++++|.++.++. .+..+++|++|++++|++++.++..+... ++|+.|++++|++..
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 66778899999999999997754 58889999999999999987666544444 599999999999864
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.6e-27 Score=247.87 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=87.6
Q ss_pred cEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc-cc---------------chhhhCCCCCcEEecCCCcCccC-Chhh
Q 007984 48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-EL---------------PAAIGELHMLKSLDVSFNSIMKI-PDEI 110 (582)
Q Consensus 48 ~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~-~l---------------~~~~~~~~~L~~L~l~~~~~~~l-~~~~ 110 (582)
+.+++..+........+.++++|++|+++++... .+ ......+++|++|++++|.+... +..+
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4555554433322334556667777777665411 11 11234566677777776665521 2223
Q ss_pred h-ccCCccEEEccCC-cCCc--CCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccchhh--
Q 007984 111 G-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL-- 179 (582)
Q Consensus 111 ~-~~~~L~~L~l~~~-~~~~--l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~-- 179 (582)
. .+++|++|++++| .+.. ++....++++|++|++++|.+.. ++.....+++|++|+++++. ..+....
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~ 204 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALE 204 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHH
Confidence 2 4667777777666 3332 33334466677777777666442 22223355667777776664 2121111
Q ss_pred --hcccccCcEEEccCC-ccCccchhhcCCCCccEEeCCCC
Q 007984 180 --IASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQN 217 (582)
Q Consensus 180 --~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~ 217 (582)
...+++|++|++++| .+..++..+..+++|+.|++..+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 233466666666665 33334455555666666665543
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.9e-25 Score=213.38 Aligned_cols=224 Identities=21% Similarity=0.314 Sum_probs=202.2
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 88 (582)
+.+..|+++++.++.+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 7899999999999999987754 789999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEecCCCcC-ccCChhhh---------ccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCcccccc
Q 007984 89 ELHMLKSLDVSFNSI-MKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~-~~l~~~~~---------~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~ 158 (582)
.+++|++|++++|.+ ..+|..+. ++++|++|++++|.++.+|..+.++++|++|++++|.+..++..+..
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 999999999999754 46676654 49999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEccCCcccccchhhhcccccCcEEEccCCcc-CccchhhcCCCCccEEeCCCCcCc-cCCcCCcCCCCCcEEE
Q 007984 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY 236 (582)
Q Consensus 159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~ 236 (582)
+++|++|++++|++....+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.+.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 99999999999988877666799999999999999865 667888999999999999998765 7899999999999999
Q ss_pred cCCCcCccc
Q 007984 237 MGNNALSAL 245 (582)
Q Consensus 237 l~~~~i~~l 245 (582)
+..+.+..+
T Consensus 308 l~~~~~~~l 316 (328)
T 4fcg_A 308 VPPHLQAQL 316 (328)
T ss_dssp CCGGGSCC-
T ss_pred CCHHHHHHH
Confidence 987665543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=9.1e-25 Score=207.20 Aligned_cols=217 Identities=23% Similarity=0.374 Sum_probs=132.0
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCccc-chhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l-~~~~~~ 89 (582)
..+++++..++.+|..+ .+++++|+++++.++.++ ..|..+++|++|+++++.+..+ +..+..
T Consensus 14 ~~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 45677777777777654 346777777777777665 3577777777777777777755 456777
Q ss_pred CCCCcEEecCCCc-CccC-ChhhhccCCccEEEccCCcCCcC-CcccccCCCCCeEEcCCCcCCCCccc-cccCCCCcEE
Q 007984 90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~L 165 (582)
+++|++|++++|. +..+ +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++.. +..+++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 7777777777775 6655 45566677777777777776655 34456666666666666666655433 5566666666
Q ss_pred EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc
Q 007984 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~ 243 (582)
++++|+++.+....+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6666666655555455555555555555555443 3344444555555555554444332 2344444444444444443
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.2e-26 Score=242.63 Aligned_cols=219 Identities=15% Similarity=0.175 Sum_probs=153.4
Q ss_pred ccCccEEEcCCCCcc-c---------------hhHhhcCCCCCcEEEcCCCCCcc-cchhhh-CCCCCcEEecCCC-cCc
Q 007984 44 AVDLQKLILAHNNIE-K---------------LKEDLRNLPLLTVLNVSHNKLSE-LPAAIG-ELHMLKSLDVSFN-SIM 104 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~-~---------------~~~~~~~~~~L~~L~L~~~~~~~-l~~~~~-~~~~L~~L~l~~~-~~~ 104 (582)
+++|++|+++++... . ++.....+++|++|+++++.++. .+..+. .+++|++|++++| .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 678999999887521 1 12234578899999999998773 233443 6899999999988 555
Q ss_pred c--CChhhhccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCc--CC--CCccccccCCCCcEEEccCC-cc
Q 007984 105 K--IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNC--IT--SLPEDLADCSKMSKLDVEGN-KL 172 (582)
Q Consensus 105 ~--l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~--~~--~i~~~l~~~~~L~~L~l~~~-~i 172 (582)
. ++..+.++++|++|++++|.+.. ++.....+++|++|++++|. +. .+......+++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 45556689999999999988663 23334477899999999886 21 22222456799999999887 44
Q ss_pred cccchhhhcccccCcEEEccCCc-------cCccchhhcCCCCccEE-eCCCCcCccCCcCCcCCCCCcEEEcCCCcCcc
Q 007984 173 TVLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRL-DLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244 (582)
Q Consensus 173 ~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 244 (582)
..+ ...+..+++|+++.+..+. +..++..+..+++|+.+ .+.+.....++..+..+++|++|++++|.+..
T Consensus 225 ~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 225 EKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHH-HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 443 3347788999999866553 33455577888899988 55544444455555567888888888888662
Q ss_pred --cchhhhccCCCcEEEcccC
Q 007984 245 --LPAELGKLSKLGTLDLHSN 263 (582)
Q Consensus 245 --l~~~l~~~~~L~~L~l~~~ 263 (582)
+...+..+++|++|+++++
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHhcCCCcCEEeCcCc
Confidence 3344567888888888877
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=6e-24 Score=201.53 Aligned_cols=221 Identities=23% Similarity=0.303 Sum_probs=196.9
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccC-ChhhhccCCccEEEccC
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS 123 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 123 (582)
.-++++.++..++.+|..+ .++|++|+++++.++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus 12 ~~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 12 PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SSCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3478999999999888654 4799999999999998764 789999999999999999976 66789999999999999
Q ss_pred Cc-CCcC-CcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984 124 NQ-LKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 124 ~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
|. +..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|+++.+....++.+++|++|++++|.+..++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 8777 56788999999999999999977 456889999999999999999998888999999999999999998877
Q ss_pred h-hhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCcccch-hhhccCCCcEEEcccCccccc
Q 007984 201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~~ 268 (582)
. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+...
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5 588899999999999999865 7889999999999999999998764 588999999999999988743
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=212.08 Aligned_cols=193 Identities=26% Similarity=0.363 Sum_probs=130.6
Q ss_pred cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC-CCCccCCCccccCCCCCcEE
Q 007984 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQIL 456 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L 456 (582)
+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++ +.+..+....|..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 4556666666666655544 455566666666666666655555556666666666665 33444555555666666666
Q ss_pred eCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCC
Q 007984 457 DLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS 533 (582)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~ 533 (582)
++++|.++.+. .+..+++|++|++ .+.+..+ +..+..+++|+.|++++|+++.++ ..|.++++|++|+|++|+++
T Consensus 191 ~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 66666655443 2555666666666 4444433 446677899999999999999774 56889999999999999999
Q ss_pred cCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHhcC
Q 007984 534 ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 579 (582)
Q Consensus 534 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (582)
+++...+..+++|+.|++++|++.. +........|+++..
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~C------dC~l~~l~~~~~~~~ 308 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNC------NCDILWLSWWIKDMA 308 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEEC------SSTTHHHHHHHHTTS
T ss_pred ccChhHhccccCCCEEEcCCCCccC------CCCchHHHHHHHhcc
Confidence 9999888888999999999999863 444555555666543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.3e-23 Score=212.77 Aligned_cols=194 Identities=25% Similarity=0.327 Sum_probs=141.7
Q ss_pred hccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC-CCCccCCCccccCCCCCc
Q 007984 377 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQ 454 (582)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~ 454 (582)
..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++ +.+..++...|..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 345667777777777766654 366677777777777777766666667777777777776 445556665667777777
Q ss_pred EEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccC-chhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCc
Q 007984 455 ILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN 531 (582)
Q Consensus 455 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~ 531 (582)
+|++++|.++++. .+..+++|++|++ .+.+..+ +..+..+++|+.|++++|.++.+ +..|.++++|++|+|++|+
T Consensus 200 ~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 200 YLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 7777777776553 3666777777777 4444444 55678899999999999999977 4568999999999999999
Q ss_pred CCcCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHhc
Q 007984 532 ISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 578 (582)
Q Consensus 532 l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (582)
++++|...+..+++|+.|++++|++.. +........|+++.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np~~C------dC~~~~l~~~l~~~ 318 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNPWNC------DCDILWLAWWLREY 318 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSCEEC------STTTHHHHHHHHHH
T ss_pred CCccChHHhccccCCCEEEccCCCcCC------CCCchHHHHHHHHh
Confidence 999999888878999999999999763 33334444455544
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=211.99 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=159.3
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccc-hhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~-~~~~~ 89 (582)
..+++++..++.+|..+ .++++.|+++++.++.++ ..|..+++|++|+|++|.+..++ ..|..
T Consensus 46 ~~v~c~~~~l~~iP~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp CEEECCSCCCSSCCSCC---------------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred CEEEeCCCCcCcCCCCC---------------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 45667777777777655 346777777777777664 46777777777777777777554 46777
Q ss_pred CCCCcEEecCCCcCccCCh-hhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCC-cCCCCcc-ccccCCCCcEE
Q 007984 90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~L 165 (582)
+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+.++++|++|++++| .+..++. .|..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 7777777777777776654 46677777777777777775543 5666777777777764 3444433 46667777777
Q ss_pred EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc
Q 007984 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~ 243 (582)
++++|+++.++. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++
T Consensus 191 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 191 NLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred cCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 777777766653 66667777777777766654 45566667777777777776644 445666777777777777776
Q ss_pred ccch-hhhccCCCcEEEcccCccc
Q 007984 244 ALPA-ELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 244 ~l~~-~l~~~~~L~~L~l~~~~~~ 266 (582)
.++. .+..+++|+.|++++|.+.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhHhccccCCCEEEcCCCCcc
Confidence 5543 3456667777777766654
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.6e-23 Score=212.32 Aligned_cols=238 Identities=24% Similarity=0.347 Sum_probs=175.0
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-hhhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~ 89 (582)
..+++++..++.+|..+ .+++++|+++++.++.+ ++.|..+++|++|+|++|.+..++ ..|..
T Consensus 57 ~~v~c~~~~l~~iP~~~---------------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI---------------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp CEEECCSSCCSSCCSCC---------------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cEEEECCCCcCccCCCC---------------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 56777777777777655 35688888888888766 456788888888888888877664 57777
Q ss_pred CCCCcEEecCCCcCccCChh-hhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCC-cCCCCcc-ccccCCCCcEE
Q 007984 90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~-~~~~i~~-~l~~~~~L~~L 165 (582)
+++|++|++++|.+..++.. +..+++|++|++++|.+..++. .+.++++|+.|++++| .+..++. .+..+++|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 88888888888888777544 6778888888888888776654 5677888888888874 4444443 47777888888
Q ss_pred EccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCcCccC-CcCCcCCCCCcEEEcCCCcCc
Q 007984 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~ 243 (582)
++++|+++.++. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++
T Consensus 202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 888887777653 67777888888888877665 45677777888888888877754 456777778888888888777
Q ss_pred ccch-hhhccCCCcEEEcccCccc
Q 007984 244 ALPA-ELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 244 ~l~~-~l~~~~~L~~L~l~~~~~~ 266 (582)
.++. .+..+++|++|++++|.+.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccChHHhccccCCCEEEccCCCcC
Confidence 6653 3566777778877777655
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.6e-24 Score=208.05 Aligned_cols=242 Identities=16% Similarity=0.150 Sum_probs=119.2
Q ss_pred ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCc--ccchhhh-------CCCCCcEEecCCCcCc-cCChhh-
Q 007984 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPDEI- 110 (582)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~-~l~~~~- 110 (582)
...++|++++++++.+ .+|..+... |+.|+++++.+. .++..+. .+++|++|++++|.+. .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3344455555555555 444433322 555555555543 2333332 4555555555555554 334433
Q ss_pred -hccCCccEEEccCCcCCcCCcccccC-----CCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCccccc----chhh
Q 007984 111 -GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----SNNL 179 (582)
Q Consensus 111 -~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~----~~~~ 179 (582)
..+++|++|++++|.+..+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++++|++... ....
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 45555555555555555444444443 55555555555555443 3455555555555555553321 1111
Q ss_pred hcccccCcEEEccCCccCccc----hhhcCCCCccEEeCCCCcCccCC--cCCcCCCCCcEEEcCCCcCcccchhhhccC
Q 007984 180 IASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELGKLS 253 (582)
Q Consensus 180 ~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~ 253 (582)
+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++.+|..+. +
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence 245555555555555554322 12234455555555555555432 233445556666666665555555444 5
Q ss_pred CCcEEEcccCcccccchhhhcccccEEEccCCCCC
Q 007984 254 KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288 (582)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 288 (582)
+|++|++++|+++.++......+|+++++++|.++
T Consensus 275 ~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 56666666665555544222333556666665554
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.5e-24 Score=206.16 Aligned_cols=215 Identities=22% Similarity=0.297 Sum_probs=127.3
Q ss_pred ccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEcc
Q 007984 44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 122 (582)
+++|++|++++|.++.++ ..|..+++|++|++++|.+..++. +..+++|++|++++|.+..++ ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 456677777777666553 466666777777777766665443 666666777777666665443 23666666666
Q ss_pred CCcCCcCCcccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEEEccCCcccccchhhh-cccccCcEEEccCCccCccc
Q 007984 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 123 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 200 (582)
+|.+..++. ..+++|++|++++|.+..++. .+..+++|++|++++|.+..+....+ ..+++|++|++++|.+..++
T Consensus 108 ~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 666664432 224566666666666665533 45556666666666666665544433 24566666666666665543
Q ss_pred hhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCccc
Q 007984 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 201 ~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~ 266 (582)
.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus 186 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 22 235566666666666665555555556666666666666655555555556666666655554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3.3e-24 Score=206.36 Aligned_cols=239 Identities=18% Similarity=0.214 Sum_probs=207.6
Q ss_pred HHHHHhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc
Q 007984 4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (582)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l 83 (582)
+.+..++++.|+++++.++.++...+.. +++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTT------------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhC------------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc
Confidence 3445578999999999999988766554 7889999999999987654 89999999999999998876
Q ss_pred chhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCCCc-ccc-ccCC
Q 007984 84 PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDL-ADCS 160 (582)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~-~~l-~~~~ 160 (582)
+ ..++|++|++++|.+..++. ..+++|++|++++|.+..++. .+..+++|++|++++|.+..++ ..+ ..++
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred c----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 5 34899999999999987653 347889999999999997754 7788999999999999998653 344 5789
Q ss_pred CCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 240 (582)
+|++|++++|.++.++. ...+++|++|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 99999999999998855 4468999999999999999988898999999999999999999999999999999999999
Q ss_pred cCc--ccchhhhccCCCcEEEcccC
Q 007984 241 ALS--ALPAELGKLSKLGTLDLHSN 263 (582)
Q Consensus 241 ~i~--~l~~~l~~~~~L~~L~l~~~ 263 (582)
.+. .++.++..+++|+.+++.++
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECCCc
Confidence 998 66788888999998888744
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=190.17 Aligned_cols=199 Identities=30% Similarity=0.432 Sum_probs=181.0
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..+.+++.++.++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999999987663 689999999999999876 789999999999999999999988889999999999999
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccch
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 514 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~ 514 (582)
|.+..++...|..+++|++|++++|.++.+.+..|..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9999999888999999999999999999998888999999999999 6677777664 7889999999999999998875
Q ss_pred -hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 515 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 515 -~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
.|.++++|++|++++|+++.+|+..+..+++|+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 48899999999999999999999888777999999999999754
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.5e-22 Score=189.38 Aligned_cols=217 Identities=21% Similarity=0.314 Sum_probs=174.2
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCcccch-hhhC
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE 89 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~~l~~-~~~~ 89 (582)
...++++..+..+|..+ .+++++|+++++.++.++. .|..+++|++|++++|.+..++. .+..
T Consensus 10 ~~~~c~~~~l~~ip~~l---------------~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp TEEECTTSCCSSCCSSS---------------CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred ceEEecCCCccccCCCC---------------CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 35788888888999866 4579999999999998865 78999999999999999987755 7889
Q ss_pred CCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCCCcCCC--CccccccCCCCcEE
Q 007984 90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL 165 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--i~~~l~~~~~L~~L 165 (582)
+++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++++|.+.. ++..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 999999999999998765 568899999999999999987755 68889999999999999886 67889999999999
Q ss_pred EccCCcccccchhhhcccccCc----EEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcC-CcCCCCCcEEEcCCC
Q 007984 166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 240 (582)
Q Consensus 166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~ 240 (582)
++++|+++.+....+..+++++ ++++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 9999999888777677777776 77777777776655444445677777777777665443 455666666666666
Q ss_pred cCc
Q 007984 241 ALS 243 (582)
Q Consensus 241 ~i~ 243 (582)
.+.
T Consensus 235 ~~~ 237 (276)
T 2z62_A 235 PWD 237 (276)
T ss_dssp CBC
T ss_pred ccc
Confidence 655
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.5e-24 Score=206.72 Aligned_cols=244 Identities=20% Similarity=0.202 Sum_probs=207.8
Q ss_pred hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCc--cCChhhh-------ccCCccEEEccCCcCC-cCCccc
Q 007984 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL 133 (582)
Q Consensus 64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~~~-~l~~~~ 133 (582)
+...++|++|+++++.+ .+|..+... |++|++++|.+. .++..+. ++++|++|++++|.+. .+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44567888999999999 888876655 999999999886 4666555 7999999999999998 577765
Q ss_pred --ccCCCCCeEEcCCCcCCCCccccccC-----CCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc---cchhh
Q 007984 134 --GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI 203 (582)
Q Consensus 134 --~~~~~L~~L~l~~~~~~~i~~~l~~~-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~l 203 (582)
..+++|++|++++|.+..++..+..+ ++|++|++++|++..+.+..++.+++|++|++++|.+.. ++..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 89999999999999999888777776 999999999999999998889999999999999998654 23344
Q ss_pred --cCCCCccEEeCCCCcCccCC----cCCcCCCCCcEEEcCCCcCcccc--hhhhccCCCcEEEcccCcccccchhhhcc
Q 007984 204 --GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQL 275 (582)
Q Consensus 204 --~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~l~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 275 (582)
..+++|+.|++++|.+..++ ..+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.++.... .
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~ 274 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-A 274 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-S
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-C
Confidence 78899999999999998443 23467899999999999999654 456678999999999999998877665 6
Q ss_pred cccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984 276 RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (582)
Q Consensus 276 ~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (582)
+|+++++++|.++++|. +..+++|++|++++|+++.
T Consensus 275 ~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 79999999999999966 8999999999999999864
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-22 Score=206.61 Aligned_cols=235 Identities=20% Similarity=0.255 Sum_probs=167.6
Q ss_pred ecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchhhhCCCCC
Q 007984 15 NLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHML 93 (582)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L 93 (582)
++++.....+|..+...... +++|++|++++|.++.++ ..|..+++|++|+|++|.++.++. +..+++|
T Consensus 13 ~~~~~~~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 82 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL 82 (487)
T ss_dssp EEESCCTTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTC
T ss_pred ecccCchhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCC
Confidence 33343444566666554322 557888888888887664 578888888888888888875544 7778888
Q ss_pred cEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCC-ccccccCCCCcEEEccCCcc
Q 007984 94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL 172 (582)
Q Consensus 94 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i-~~~l~~~~~L~~L~l~~~~i 172 (582)
++|++++|.+..++. .++|++|++++|.+..++. ..+++|+.|++++|.+..+ +..+..+++|++|++++|.+
T Consensus 83 ~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 83 RTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred CEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 888888887776542 3778888888888776543 2457788888888877765 34577778888888888877
Q ss_pred cccchhhhc-ccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhc
Q 007984 173 TVLSNNLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251 (582)
Q Consensus 173 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~ 251 (582)
+.+.+..+. .+++|++|++++|.+..++. ...+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..
T Consensus 157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~ 235 (487)
T 3oja_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF 235 (487)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence 766555554 67778888888877776643 2346777777777777777766677777777777777777777777777
Q ss_pred cCCCcEEEcccCccc
Q 007984 252 LSKLGTLDLHSNQLK 266 (582)
Q Consensus 252 ~~~L~~L~l~~~~~~ 266 (582)
+++|+.|++++|.+.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 777777777777766
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.9e-22 Score=203.91 Aligned_cols=240 Identities=21% Similarity=0.215 Sum_probs=184.1
Q ss_pred cchhHhhcCC----CCCcEEEcCCCCCcccc-hhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcc
Q 007984 58 EKLKEDLRNL----PLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132 (582)
Q Consensus 58 ~~~~~~~~~~----~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~ 132 (582)
..+|..+..+ ++|++|+|++|.+..++ ..|..+++|++|++++|.+...+. +..+++|++|++++|.+..++.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-
Confidence 3556555444 48999999999999774 589999999999999999986654 8899999999999999887653
Q ss_pred cccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc-cchhhc-CCCCcc
Q 007984 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIG-SLSRLI 210 (582)
Q Consensus 133 ~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~-~~~~L~ 210 (582)
.++|++|++++|.+..++. ..+++|++|++++|.++.+.+..++.+++|+.|++++|.+.. .+..+. .+++|+
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred ---CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 3899999999999987754 356899999999999998888778899999999999999876 345554 688999
Q ss_pred EEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhc-ccccEEEccCCCCC-
Q 007984 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLS- 288 (582)
Q Consensus 211 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~l~l~~~~l~- 288 (582)
.|++++|.+..++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++..... .+++.+++++|.+.
T Consensus 173 ~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 173 HLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred EEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence 99999999887743 4458889999999999888877788888888888888887765543222 23555555555544
Q ss_pred -CCCccccCCCCCCeEEc
Q 007984 289 -GLPPEIGKMTTLRKLLL 305 (582)
Q Consensus 289 -~~~~~l~~~~~L~~L~l 305 (582)
.++..+..++.++.+++
T Consensus 252 ~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEec
Confidence 23333444444444433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=7.3e-22 Score=186.23 Aligned_cols=202 Identities=29% Similarity=0.325 Sum_probs=176.1
Q ss_pred ccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984 357 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 434 (582)
..++.++++++.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999998776 66678999999999999998765 6889999999999999999988888899999999999
Q ss_pred CCCCCccCCCccccCCCCCcEEeCCCCcCCCCC-CCCCCCCccchhhhh-ccccccCc-hhhhccCCCC----EEecCCC
Q 007984 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLR----ILDLSQN 507 (582)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l-~~~~~~~~-~~~~~~~~L~----~L~l~~~ 507 (582)
++|.+..+....+..+++|++|++++|.+.... +..+..+++|++|++ .+.+..++ ..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 999999988877999999999999999998764 677899999999999 56666544 3566666666 8999999
Q ss_pred cCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 508 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 508 ~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
.++.++.......+|++|++++|+++++|+..+..+++|+.|++++|++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 999887666566799999999999999999888878999999999999874
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.3e-21 Score=182.27 Aligned_cols=200 Identities=26% Similarity=0.312 Sum_probs=120.9
Q ss_pred cccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCccc-chhhhCCCCCcEEecCCCcCccCChhhhccCCccEE
Q 007984 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (582)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 119 (582)
+.+++++++++++++.++.+|..+. ++++.|++++|.+..+ +..+..+++|++|++++|.+..++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4445666777777766666665443 4666777777766654 34566666677777766666655432 556666666
Q ss_pred EccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc-cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCc
Q 007984 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (582)
Q Consensus 120 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~ 198 (582)
++++|.+..+|..+..+++|+.|++++|.+..++ ..|..+++|++|++++|+++.+....+..+++|+.|++++|.+..
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 6666666666665666666666666666666554 346666666666666666666665555556666666666665555
Q ss_pred cch-hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCc
Q 007984 199 MPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 199 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 243 (582)
++. .+..+++|+.|++++|.+..+|..+....+|+.+++++|.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 543 234455555666655555555555555555555555555443
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.9e-21 Score=185.84 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=103.0
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
+++|++|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 445555555555555543 35555555555555555555544 555555555555555555443 344555555555555
Q ss_pred CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (582)
Q Consensus 124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (582)
|.+..++. +..+++|++|++++|.+..+ .. +..+++|++|++++|.+..++. +
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~~--l~~l~~L~~L~l~~n~l~~~~~-l 169 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNI-----------------------SP--LAGLTNLQYLSIGNAQVSDLTP-L 169 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCC-----------------------GG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcC-----------------------cc--ccCCCCccEEEccCCcCCCChh-h
Confidence 55554432 44445555555555544444 33 4444445555555554444433 4
Q ss_pred cCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCccccc
Q 007984 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~ 268 (582)
..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++..
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence 455555555555555554432 5555666666666666665542 55666666666666666543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3e-21 Score=182.51 Aligned_cols=197 Identities=28% Similarity=0.350 Sum_probs=180.4
Q ss_pred HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-HhhcCCCCCcEEEcCCCCCcccchh
Q 007984 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAA 86 (582)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-~~~~~~~~L~~L~L~~~~~~~l~~~ 86 (582)
.+.++.++++++.++.+|..+ .+++++|+++++.++.++ ..|..+++|++|++++|.++.++..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~---------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC---------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCC---------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 467889999999999999876 457999999999999774 6899999999999999999987654
Q ss_pred hhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCccc-cccCCCCcE
Q 007984 87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSK 164 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~-l~~~~~L~~ 164 (582)
..+++|++|++++|.+..+|..+..+++|++|++++|+++.++ ..+.++++|++|++++|.+..++.. |..+++|++
T Consensus 74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 7899999999999999999998999999999999999999886 5688999999999999999987655 788999999
Q ss_pred EEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCc
Q 007984 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220 (582)
Q Consensus 165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 220 (582)
|++++|+++.++...+..+++|+.|++++|.+..+|..+....+|+.+++++|.+.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99999999999998899999999999999999999998888899999999999865
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4e-21 Score=183.63 Aligned_cols=197 Identities=18% Similarity=0.311 Sum_probs=151.6
Q ss_pred CCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEcc
Q 007984 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~ 168 (582)
.+++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 4455555555555555554 35556666666666666665544 566666666666666666653 56777778888888
Q ss_pred CCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchh
Q 007984 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (582)
Q Consensus 169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~ 248 (582)
+|+++.+.. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.
T Consensus 116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 887777654 7888889999999998887765 7889999999999999998766 8999999999999999998865
Q ss_pred hhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCcc
Q 007984 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE 293 (582)
Q Consensus 249 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 293 (582)
+..+++|++|++++|.+..++......+|+.+++++|.++..+..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCee
Confidence 889999999999999999888655556699999999988876554
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=7.6e-21 Score=178.36 Aligned_cols=196 Identities=23% Similarity=0.355 Sum_probs=139.5
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCChh-hhccCCccEEEccC
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSS 123 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~ 123 (582)
+.+.++++++.++.+|..+. +++++|+++++.+..++. .|..+++|++|++++|.+..++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45677777777776665443 467777777777776644 566777777777777777766544 45677777777777
Q ss_pred CcCCcCCc-ccccCCCCCeEEcCCCcCCCCcc-ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccch
Q 007984 124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201 (582)
Q Consensus 124 ~~~~~l~~-~~~~~~~L~~L~l~~~~~~~i~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 201 (582)
|.+..++. .+.++++|++|++++|.+..++. .+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77776653 45667777777777777776543 36777777788887777777777767777888888888887776654
Q ss_pred -hhcCCCCccEEeCCCCcCccCCc-CCcCCCCCcEEEcCCCcCc
Q 007984 202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS 243 (582)
Q Consensus 202 -~l~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~ 243 (582)
.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 46777888888888888876654 4677888888888888765
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.6e-21 Score=176.48 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCc-CccCCh-hhhccCCccEEEccC-CcCCcCC-cccccCCCCCeEE
Q 007984 69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK 143 (582)
Q Consensus 69 ~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~ 143 (582)
+|++|+++++.++.++. .|..+++|++|++++|. +..++. .+.++++|++|++++ |.+..++ ..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555444433 44445555555555553 444432 344555555555554 4554443 2344555555555
Q ss_pred cCCCcCCCCccccccCCCCc---EEEccCC-cccccchhhhcccccCc-EEEccCCccCccchhhcCCCCccEEeCCCCc
Q 007984 144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (582)
Q Consensus 144 l~~~~~~~i~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 218 (582)
+++|.+..+|. +..+++|+ +|++++| .++.++...+..+++|+ ++++++|.+..++......++|+.|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 55555555543 45555555 6666666 66666665566666666 6666666666555433233667777777773
Q ss_pred -CccCC-cCCcCC-CCCcEEEcCCCcCcccchhhhccCCCcEEEcccC
Q 007984 219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263 (582)
Q Consensus 219 -~~~~~-~~l~~~-~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~ 263 (582)
+..++ ..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 66553 446666 7777777777777766554 5667777777654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.5e-20 Score=172.75 Aligned_cols=177 Identities=31% Similarity=0.400 Sum_probs=124.6
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..+.+++.++.+..+|..+. +.++.|++++|.+..++. .+..+++|++|++++|.+++++...|..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44567777777766666553 566777777777666544 466667777777777777766666666677777777777
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch-h
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-G 515 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~ 515 (582)
|.++.++...|..+++|++|++++|.++.+.+.. +..+++|+.|++++|.++.++. .
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~Ls~N~l~~~~~~~ 150 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----------------------FDRLTKLKELRLNTNQLQSIPAGA 150 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhH----------------------hccCCcccEEECcCCcCCccCHHH
Confidence 7777666666666777777777777666554433 3456778888888888887765 4
Q ss_pred hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 516 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
+.++++|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7788888888888888888877666666888888888888764
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.3e-21 Score=175.54 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=167.3
Q ss_pred ccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCC-Ccccch-hhhCCCCCcEEecCC-CcCccCC-hhhhccCCccE
Q 007984 44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVK 118 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~ 118 (582)
..++++|+++++.++.++. .|..+++|++|++++|. ++.++. .|..+++|++|++++ |.+..++ ..+.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4589999999999998875 78899999999999997 887765 788999999999998 8998876 45788999999
Q ss_pred EEccCCcCCcCCcccccCCCCC---eEEcCCC-cCCCCccc-cccCCCCc-EEEccCCcccccchhhhcccccCcEEEcc
Q 007984 119 FDCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIAS 192 (582)
Q Consensus 119 L~l~~~~~~~l~~~~~~~~~L~---~L~l~~~-~~~~i~~~-l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 192 (582)
|++++|.+..+|. +..+++|+ +|++++| .+..++.. |..+++|+ +|++++|+++.++...+.. ++|++|+++
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 9999999998876 88888888 9999999 88877654 88899999 9999999999888877777 899999999
Q ss_pred CCc-cCccc-hhhcCC-CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984 193 KNL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 193 ~~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 240 (582)
+|. +..++ ..+..+ ++|+.|++++|.+..+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 995 88775 467788 8999999999999988765 6788999998875
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=2.5e-21 Score=191.95 Aligned_cols=226 Identities=17% Similarity=0.189 Sum_probs=157.9
Q ss_pred ccCccEEEcCCCCccc-----hhHhhcCCCCCcEEEcCCCCCcc----cchh-------hhCCCCCcEEecCCCcCcc--
Q 007984 44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-- 105 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~-----~~~~~~~~~~L~~L~L~~~~~~~----l~~~-------~~~~~~L~~L~l~~~~~~~-- 105 (582)
+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. +|.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6788899998888774 33457788888999888876552 2333 3678888888888888775
Q ss_pred ---CChhhhccCCccEEEccCCcCCc-----CCcccccC---------CCCCeEEcCCCcCC--CCc---cccccCCCCc
Q 007984 106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS 163 (582)
Q Consensus 106 ---l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~~~~--~i~---~~l~~~~~L~ 163 (582)
++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 56667788888888888888752 22333344 78888888888776 333 4566778888
Q ss_pred EEEccCCccccc-----chhhhcccccCcEEEccCCcc-----CccchhhcCCCCccEEeCCCCcCcc-----CCcCC--
Q 007984 164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSI-- 226 (582)
Q Consensus 164 ~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~l-- 226 (582)
+|++++|+++.. .+..+..+++|++|++++|.+ ..++..+..+++|+.|++++|.+.. ++..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 888888877632 222466777888888888777 3456667777778888888877663 24444
Q ss_pred cCCCCCcEEEcCCCcCcc-----cchhh-hccCCCcEEEcccCcccccc
Q 007984 227 SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC 269 (582)
Q Consensus 227 ~~~~~L~~L~l~~~~i~~-----l~~~l-~~~~~L~~L~l~~~~~~~~~ 269 (582)
..+++|++|++++|.++. ++..+ ..+++|++|++++|.++...
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 336777777777777775 56655 45677777777777766544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=6.6e-20 Score=172.06 Aligned_cols=178 Identities=31% Similarity=0.423 Sum_probs=128.0
Q ss_pred ccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEe
Q 007984 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (582)
Q Consensus 378 ~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 457 (582)
.+++|++|+++++.+..++ .+..+++|++|++++|.++++. .+..+++|++|++++|.++.+....|..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4566777777777766655 3566777777777777776653 466777777777777777777666667777777777
Q ss_pred CCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCc
Q 007984 458 LSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 534 (582)
Q Consensus 458 l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~ 534 (582)
+++|.+++..+..+..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.. +.++++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 7777777666666777777777777 4555555443 56778888888888888877543 6778888888888888888
Q ss_pred CCCcccccccccceeeccCCCCCc
Q 007984 535 LPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 535 l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
+++..+..+++|+.|++++|++..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCHHHHhCCcCCCEEEccCCCccc
Confidence 777766666888888888887653
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=4.6e-20 Score=173.14 Aligned_cols=193 Identities=27% Similarity=0.369 Sum_probs=169.9
Q ss_pred ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..++.+.+.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++...+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 56889999999988775 4677999999999999998875 688999999999999999999988889999999999999
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh-ccccccCchh-hhccCCCCEEecCCCcCCccch
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 514 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~ 514 (582)
|.+..++...|..+++|++|++++|.++++.+..+..+++|++|++ .+.+..++.. +..+++|+.|++++|.++.++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 9999998888999999999999999999988888999999999999 6666666554 6889999999999999998764
Q ss_pred -hhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 515 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 515 -~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
.+..+++|++|++++|.+.. .|++|+.+++++|.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 47899999999999998763 34778888888877653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.5e-21 Score=190.13 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=129.0
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCccC----Chhh------
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMKI----PDEI------ 110 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~l----~~~~------ 110 (582)
.++...++...+..++..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+..+ |..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444455666777888888888888888773 333466788888888888755532 3333
Q ss_pred -hccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCcCCC-----CccccccC---------CCCcEEEccCC
Q 007984 111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN 170 (582)
Q Consensus 111 -~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~---------~~L~~L~l~~~ 170 (582)
..+++|++|++++|.+.. ++..+.++++|++|++++|.+.. ++..+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 566777777777777664 44556667777777777776652 22223333 66667776666
Q ss_pred cccccch----hhhcccccCcEEEccCCccCc------cchhhcCCCCccEEeCCCCcCc-----cCCcCCcCCCCCcEE
Q 007984 171 KLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF 235 (582)
Q Consensus 171 ~i~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L 235 (582)
+++.... ..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+. .++..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 6652211 134455566666666665541 1224455556666666666552 334445555555555
Q ss_pred EcCCCcCcc-----cchhhhc--cCCCcEEEcccCcccc
Q 007984 236 YMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE 267 (582)
Q Consensus 236 ~l~~~~i~~-----l~~~l~~--~~~L~~L~l~~~~~~~ 267 (582)
++++|.++. ++..+.. +++|++|++++|.++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 555555542 2333322 5555555555555544
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=2e-20 Score=182.11 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=173.6
Q ss_pred CccEEEcCCCCccchhHhhcCC--CCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCcc--CChhhhccCCccEEEc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDC 121 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l 121 (582)
.++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+.. ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4788888887765 3455555 78888888888877665556678888888888887763 6666778888888888
Q ss_pred cCCcCC-cCCcccccCCCCCeEEcCCC-cCC--CCccccccCCCCcEEEccCC-ccccc-chhhhcccc-cCcEEEccCC
Q 007984 122 SSNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKN 194 (582)
Q Consensus 122 ~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~i~~~l~~~~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~ 194 (582)
++|.+. ..+..+..+++|++|++++| .+. .++..+..+++|++|++++| .+++. ....+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 888776 44556777888888888888 566 35556778888888888888 77753 233467778 8888888888
Q ss_pred c--c--CccchhhcCCCCccEEeCCCCc-Cc-cCCcCCcCCCCCcEEEcCCCc-Cc-ccchhhhccCCCcEEEcccCccc
Q 007984 195 L--L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLK 266 (582)
Q Consensus 195 ~--~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-i~-~l~~~l~~~~~L~~L~l~~~~~~ 266 (582)
. + ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 4 3 3455666778888888888887 44 445677788888888888884 32 11235677888888888887 44
Q ss_pred ccchhhhcccccEEEccCCCCCCCC
Q 007984 267 EYCVEACQLRLSVLDLSNNSLSGLP 291 (582)
Q Consensus 267 ~~~~~~~~~~L~~l~l~~~~l~~~~ 291 (582)
..........++.++++.|.+++..
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHHHHHHhhCcceEEecccCcccc
Confidence 3332333334677777777777643
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=2.5e-20 Score=182.76 Aligned_cols=243 Identities=20% Similarity=0.220 Sum_probs=171.2
Q ss_pred eecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchh-----HhhcCCC-CCcEEEcCCCCCccc-chh
Q 007984 14 LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PAA 86 (582)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~-----~~~~~~~-~L~~L~L~~~~~~~l-~~~ 86 (582)
.+++.+.+......+... .++|++|++++|.++..+ +.+..++ +|++|++++|.++.. +..
T Consensus 3 ~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 70 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70 (362)
T ss_dssp EECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH
T ss_pred cccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH
Confidence 466777777544444442 456999999999888654 6678888 899999999988854 334
Q ss_pred hhCC-----CCCcEEecCCCcCccCChh-----hhcc-CCccEEEccCCcCCcCCc-c----ccc-CCCCCeEEcCCCcC
Q 007984 87 IGEL-----HMLKSLDVSFNSIMKIPDE-----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNCI 149 (582)
Q Consensus 87 ~~~~-----~~L~~L~l~~~~~~~l~~~-----~~~~-~~L~~L~l~~~~~~~l~~-~----~~~-~~~L~~L~l~~~~~ 149 (582)
+..+ ++|++|++++|.+...... +..+ ++|++|++++|.+...+. . +.. .++|++|++++|.+
T Consensus 71 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 71 LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 4443 8899999999988854332 4444 789999999998875542 2 333 36899999999888
Q ss_pred C-----CCccccccCC-CCcEEEccCCcccccchhhhc----cc-ccCcEEEccCCccCc-----cchhhcC-CCCccEE
Q 007984 150 T-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIRL 212 (582)
Q Consensus 150 ~-----~i~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~L 212 (582)
. .++..+...+ +|++|++++|+++......+. .+ ++|++|++++|.+.. ++..+.. .++|+.|
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 7 3344455665 899999999988876654343 34 588888888888865 4455544 4588888
Q ss_pred eCCCCcCccCC-----cCCcCCCCCcEEEcCCCcCc--------ccchhhhccCCCcEEEcccCccccc
Q 007984 213 DLHQNRILSIP-----SSISGCCSLAEFYMGNNALS--------ALPAELGKLSKLGTLDLHSNQLKEY 268 (582)
Q Consensus 213 ~l~~~~~~~~~-----~~l~~~~~L~~L~l~~~~i~--------~l~~~l~~~~~L~~L~l~~~~~~~~ 268 (582)
++++|.+...+ ..+..+++|++|++++|.+. .++..+..+++|+.|++++|.+...
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 88888877542 34567778888888888733 2233456667777888887776654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=4.1e-19 Score=164.56 Aligned_cols=158 Identities=28% Similarity=0.417 Sum_probs=133.8
Q ss_pred cccccEEEecCCCCccCCh-hhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984 356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (582)
Q Consensus 356 ~~~l~~l~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (582)
+..++.+++.++.+..++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 4578999999999987766 46678999999999999998765 588999999999999999999988899999999999
Q ss_pred CCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccc
Q 007984 434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP 513 (582)
Q Consensus 434 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 513 (582)
+++|.++.++...|..+++|++|++++|.++.+.+..|. .+++|+.|++++|.++.++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD----------------------KLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCSCCC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC----------------------cCcCCCEEECCCCcCCccC
Confidence 999999999988889999999999999999877654444 4567777888888777765
Q ss_pred h-hhcCCCCCCEEeCCCCcCCcC
Q 007984 514 E-GFKNLTSLTELDLSDNNISAL 535 (582)
Q Consensus 514 ~-~~~~l~~L~~L~l~~n~l~~l 535 (582)
. .+..+++|++|++++|+++..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4 477778888888888877643
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=172.69 Aligned_cols=196 Identities=18% Similarity=0.151 Sum_probs=88.2
Q ss_pred CCCcEEecCCCcCcc-CChhh--hccCCccEEEccCCcCCcC-C----cccccCCCCCeEEcCCCcCCCCc-cccccCCC
Q 007984 91 HMLKSLDVSFNSIMK-IPDEI--GSATALVKFDCSSNQLKEL-P----SSLGRCLNLSDFKASNNCITSLP-EDLADCSK 161 (582)
Q Consensus 91 ~~L~~L~l~~~~~~~-l~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~~~~L~~L~l~~~~~~~i~-~~l~~~~~ 161 (582)
++|++|++++|.+.. .|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 334444444444442 23333 4444455555544444421 1 11223445555555555444332 23444555
Q ss_pred CcEEEccCCcccc---cc-hhhhcccccCcEEEccCCccCccch----hhcCCCCccEEeCCCCcCccC-CcCCcCC---
Q 007984 162 MSKLDVEGNKLTV---LS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSI-PSSISGC--- 229 (582)
Q Consensus 162 L~~L~l~~~~i~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~-~~~l~~~--- 229 (582)
|++|++++|++.. +. ...+..+++|++|++++|.++.++. .+..+++|++|++++|.+... |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555554332 11 1112344455555555555543332 123445555555555555543 3333333
Q ss_pred CCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCC
Q 007984 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288 (582)
Q Consensus 230 ~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~ 288 (582)
++|++|++++|.++.+|..+. ++|++|++++|.++.++......+|+.+++++|.++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 355555555555555544432 455555555555555433333334555555555543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=172.08 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=178.9
Q ss_pred ccCccEEEcCCCCccc--hhH--hhcCCCCCcEEEcCCCCCcc-cchhh--hCCCCCcEEecCCCcCccC-C----hhhh
Q 007984 44 AVDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIG 111 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~--~~~--~~~~~~~L~~L~L~~~~~~~-l~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~ 111 (582)
...++.+.+.++.+.. +.. .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.+... + ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4568899999887762 221 22345779999999999884 45566 8899999999999998853 2 2345
Q ss_pred ccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCC---Cc--cccccCCCCcEEEccCCcccccchh---hhcc
Q 007984 112 SATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---LP--EDLADCSKMSKLDVEGNKLTVLSNN---LIAS 182 (582)
Q Consensus 112 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~---i~--~~l~~~~~L~~L~l~~~~i~~~~~~---~~~~ 182 (582)
.+++|++|++++|.+..++ ..+.++++|++|++++|.+.. ++ ..+..+++|++|++++|+++.++.. .++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 7999999999999998665 578899999999999998753 32 2347889999999999999765543 3578
Q ss_pred cccCcEEEccCCccCcc-chhhcCC---CCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEE
Q 007984 183 WTMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258 (582)
Q Consensus 183 ~~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L 258 (582)
+++|++|++++|.+... |..+..+ ++|+.|++++|.++.+|..+. ++|++|++++|.++.+|. +..+++|++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence 89999999999999876 6666555 699999999999998887774 899999999999998765 6888999999
Q ss_pred EcccCcccc
Q 007984 259 DLHSNQLKE 267 (582)
Q Consensus 259 ~l~~~~~~~ 267 (582)
++++|.++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999998864
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.2e-19 Score=176.49 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=189.6
Q ss_pred hhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcc--cchh
Q 007984 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA 86 (582)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~--l~~~ 86 (582)
+..+.++++++.+. |..+ ..+ ..++++.++++++.+...+..+..+++|++|++++|.+.. ++..
T Consensus 47 ~~~~~l~l~~~~~~--~~~~-~~~----------~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVT-GRL----------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TTSSEEECTTCBCC--HHHH-HHH----------HHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hhheeeccccccCC--HHHH-Hhh----------hhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 34788899888765 3222 221 0168999999999888776667789999999999999873 6778
Q ss_pred hhCCCCCcEEecCCCcCc-cCChhhhccCCccEEEccCC-cCC--cCCcccccCCCCCeEEcCCC-cCCC--CccccccC
Q 007984 87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC 159 (582)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~l~~~~~~~~~L~~L~l~~~-~~~~--i~~~l~~~ 159 (582)
+..+++|++|++++|.+. ..+..+..+++|++|++++| .++ .++..+.++++|++|++++| .+.. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 899999999999999887 45667888999999999999 576 36667888999999999999 8874 56678889
Q ss_pred C-CCcEEEccCCc--cc-ccchhhhcccccCcEEEccCCc-cC-ccchhhcCCCCccEEeCCCCc-Cc-cCCcCCcCCCC
Q 007984 160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS 231 (582)
Q Consensus 160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~ 231 (582)
+ +|++|++++|. ++ ..-...+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9 99999999994 43 2222347789999999999998 43 456678889999999999995 32 11235788999
Q ss_pred CcEEEcCCCcCcccchhhhcc-CCCcEEEcccCcccccchh
Q 007984 232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCVE 271 (582)
Q Consensus 232 L~~L~l~~~~i~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~ 271 (582)
|+.|++++| +..- .+..+ ..++.|++++|.+++..+.
T Consensus 274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCC
Confidence 999999999 4421 12222 2356666889988875544
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.1e-18 Score=163.21 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=95.9
Q ss_pred CCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCC
Q 007984 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (582)
Q Consensus 67 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 146 (582)
+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCC
Confidence 445555555555555442 24445555555555555554443 455555555555555555443 245555555555555
Q ss_pred CcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCC
Q 007984 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226 (582)
Q Consensus 147 ~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l 226 (582)
|.+..+ ..+..+++|++|++++|+++.+. .+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++ .+
T Consensus 122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l 196 (291)
T 1h6t_A 122 NGISDI-NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL 196 (291)
T ss_dssp SCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CcCCCC-hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh-hh
Confidence 555554 34555556666666666555552 25556666666666666655544 556666666666666666654 36
Q ss_pred cCCCCCcEEEcCCCcCccc
Q 007984 227 SGCCSLAEFYMGNNALSAL 245 (582)
Q Consensus 227 ~~~~~L~~L~l~~~~i~~l 245 (582)
..+++|+.|++++|.+...
T Consensus 197 ~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 197 AGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCTTCSEEEEEEEEEECC
T ss_pred ccCCCCCEEECcCCcccCC
Confidence 6666677777766666543
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=3.3e-19 Score=174.79 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=163.8
Q ss_pred EEEcCCCCccch-hHhhcCCCCCcEEEcCCCCCcccc-----hhhhCCC-CCcEEecCCCcCccC-Chhhhcc-----CC
Q 007984 49 KLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-----AAIGELH-MLKSLDVSFNSIMKI-PDEIGSA-----TA 115 (582)
Q Consensus 49 ~L~l~~~~i~~~-~~~~~~~~~L~~L~L~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~-----~~ 115 (582)
.+.++.+.++.. |..+...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 357788888854 445555666999999999988664 5778888 899999999988865 3344443 88
Q ss_pred ccEEEccCCcCCcCCc-----ccccC-CCCCeEEcCCCcCCCCcc-----cccc-CCCCcEEEccCCcccccchhhh---
Q 007984 116 LVKFDCSSNQLKELPS-----SLGRC-LNLSDFKASNNCITSLPE-----DLAD-CSKMSKLDVEGNKLTVLSNNLI--- 180 (582)
Q Consensus 116 L~~L~l~~~~~~~l~~-----~~~~~-~~L~~L~l~~~~~~~i~~-----~l~~-~~~L~~L~l~~~~i~~~~~~~~--- 180 (582)
|++|++++|.+...+. .+..+ ++|++|++++|.+...+. .+.. .++|++|++++|.+++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999998875432 24445 788888888888775432 2334 3688888888888875443332
Q ss_pred -cccc-cCcEEEccCCccCccc-----hhhcCC-CCccEEeCCCCcCcc-----CCcCCcC-CCCCcEEEcCCCcCcccc
Q 007984 181 -ASWT-MLTELIASKNLLNGMP-----ETIGSL-SRLIRLDLHQNRILS-----IPSSISG-CCSLAEFYMGNNALSALP 246 (582)
Q Consensus 181 -~~~~-~L~~L~l~~~~~~~~~-----~~l~~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~L~l~~~~i~~l~ 246 (582)
...+ +|++|++++|.+.... ..+..+ ++|+.|++++|.+.. ++..+.. .++|++|++++|.++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 3333 7778888777775432 234444 477777777777664 3334433 346777777777666432
Q ss_pred -----hhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCCCCCeEEccCCCCcc
Q 007984 247 -----AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312 (582)
Q Consensus 247 -----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~l~~~~~~~ 312 (582)
..+..+++|++|++++|.+..+..... ..++..+..+++|+.+++++|++..
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------------~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------------KALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------------HHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHH--------------HHHHHHhccCCceEEEecCCCcCCC
Confidence 233555667777777666544333211 0122345677888888898888753
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.6e-18 Score=161.53 Aligned_cols=187 Identities=22% Similarity=0.345 Sum_probs=160.3
Q ss_pred EcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCc
Q 007984 74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153 (582)
Q Consensus 74 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~ 153 (582)
.+....+..+ ..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++
T Consensus 30 ~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 30 NLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred HhcCCCcccc-cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 3444444443 245678899999999999998854 8889999999999999998876 889999999999999999875
Q ss_pred cccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCc
Q 007984 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (582)
Q Consensus 154 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~ 233 (582)
.+..+++|++|++++|++..++. +..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|+
T Consensus 107 -~l~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181 (291)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCC
T ss_pred -hhccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccC
Confidence 48999999999999999998743 88999999999999999887 578889999999999999988765 88899999
Q ss_pred EEEcCCCcCcccchhhhccCCCcEEEcccCcccccc
Q 007984 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269 (582)
Q Consensus 234 ~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~ 269 (582)
.|++++|.++.++. +..+++|+.|++++|.+...+
T Consensus 182 ~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 182 NLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred EEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 99999999998864 888999999999999877543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=3.5e-19 Score=173.63 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=172.2
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCC-CChHHhhCCCCCCEe-eC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCL-KL 434 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L-~l 434 (582)
..+.+++++++++.+|..+ .+++++|++++|.++.+|. .|.++++|++|++++|.+.+ ++...|.+++++.++ .+
T Consensus 10 ~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp ETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 4467889999999999877 4689999999999999986 68999999999999998755 666678889988864 45
Q ss_pred CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh--ccccccCch-hhhcc-CCCCEEecCCCcCC
Q 007984 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL--RMQLREAPT-DILRL-QQLRILDLSQNSLQ 510 (582)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l--~~~~~~~~~-~~~~~-~~L~~L~l~~~~l~ 510 (582)
.+|++..+.+..|..+++|++|++++|.+.......+....++..+.+ .+.+..++. .+..+ ..++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 668899998888999999999999999998887777777777777777 345555554 33444 46889999999999
Q ss_pred ccchhhcCCCCCCEEeCCC-CcCCcCCCcccccccccceeeccCCCCCcchHHHhccchH
Q 007984 511 SIPEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTK 569 (582)
Q Consensus 511 ~l~~~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 569 (582)
.++......++|+++++.+ |+++.+|..++..+++|++|++++|+++.++..+|+...+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~ 227 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence 9987766778899999985 6889999988888899999999999999998888776443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.1e-18 Score=176.64 Aligned_cols=178 Identities=31% Similarity=0.428 Sum_probs=91.5
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 125 (582)
+++.|+++++.++.+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 5566666666555555433 245666666666555554 334555555555555555554 332 55555555555
Q ss_pred CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (582)
Q Consensus 126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (582)
++.+|. .+++|+.|++++|.+..+|. .+++|++|++++|.++.+ |. +.
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~l------------------------p~-l~- 179 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFL------------------------PE-LP- 179 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC------------------------CC-CC-
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCc------------------------ch-hh-
Confidence 555544 34555555555555555443 344555555555555444 43 22
Q ss_pred CCCccEEeCCCCcCccCCcCCcCCCCC-------cEEEcCCCcCcccchhhhccCCCcEEEcccCcccc
Q 007984 206 LSRLIRLDLHQNRILSIPSSISGCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267 (582)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~ 267 (582)
++|+.|++++|.++.+|. +.. +| +.|++++|.++.+|..+..+++|+.|++++|.++.
T Consensus 180 -~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 444455555544444443 322 34 55555555555555555555555555555555543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.4e-18 Score=175.02 Aligned_cols=184 Identities=24% Similarity=0.363 Sum_probs=124.0
Q ss_pred CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCc
Q 007984 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171 (582)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~ 171 (582)
+|++|++++|.+..+|..+ .++|++|++++|.+..+| ..+++|++|++++|.+..+|. +.. +|++|++++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 4555555555554444433 144555555555555544 234555555555555555544 332 66666666666
Q ss_pred ccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccchhhhc
Q 007984 172 LTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251 (582)
Q Consensus 172 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~ 251 (582)
++.++. .+++|+.|++++|.+..+|. .+++|+.|++++|.+..+|. +. ++|+.|++++|.++.+|. +..
T Consensus 132 l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 132 LTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred CCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 665544 45667777777777766665 46899999999999999887 65 899999999999999887 544
Q ss_pred cCCC-------cEEEcccCcccccchhhhcc-cccEEEccCCCCCC-CCccccC
Q 007984 252 LSKL-------GTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSG-LPPEIGK 296 (582)
Q Consensus 252 ~~~L-------~~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~l~~-~~~~l~~ 296 (582)
+| +.|++++|.++.++...... +|+.+++++|.+++ +|..+..
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77 99999999999988765544 49999999999987 4444443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1e-17 Score=152.47 Aligned_cols=152 Identities=30% Similarity=0.398 Sum_probs=101.4
Q ss_pred ccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (582)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (582)
-+.++.+++.++.+|..+. ++|++|++++|.++.+....|..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3556666666766665443 67777777777777776666777777777777777777777666777777778888777
Q ss_pred cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 541 (582)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 541 (582)
.++.+....|. .+++|+.|++++|.++.+|..+.++++|++|++++|+++.+++..+.
T Consensus 99 ~l~~l~~~~~~----------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 99 QLTVLPSAVFD----------------------RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCCCCCTTTTT----------------------TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCCccChhHhC----------------------cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh
Confidence 77665544333 34556666666666666666666666666666666666666655555
Q ss_pred cccccceeeccCCCCC
Q 007984 542 LEPSLQALRLDGNPLR 557 (582)
Q Consensus 542 ~~~~L~~L~l~~~~~~ 557 (582)
.+++|+.|++++|++.
T Consensus 157 ~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECTTSCBC
T ss_pred CCCCCCEEEeeCCCcc
Confidence 5566666666666654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=3.6e-18 Score=166.52 Aligned_cols=233 Identities=20% Similarity=0.251 Sum_probs=175.4
Q ss_pred CceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhH-hhcCCCCCcEEEcCCCCCc-ccch-hhh
Q 007984 12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG 88 (582)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~L~~L~L~~~~~~-~l~~-~~~ 88 (582)
++++++++++++||.++ .+++++|++++|.|+.++. +|.++++|++|+|++|.+. .++. +|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---------------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---------------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSCCTTC---------------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred CEEEecCCCCCccCcCc---------------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 57889999999999877 4579999999999999975 6899999999999999875 4543 678
Q ss_pred CCCCCcE-EecCCCcCccC-ChhhhccCCccEEEccCCcCCcCCc-ccccCCCCCeEEcCC-CcCCCCcc-ccccC-CCC
Q 007984 89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM 162 (582)
Q Consensus 89 ~~~~L~~-L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~-~~~~~i~~-~l~~~-~~L 162 (582)
++++++. +.+..|.+..+ +..|..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .|..+ ..+
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 8888775 55566888877 4567889999999999999887764 344566777888765 45665554 34444 468
Q ss_pred cEEEccCCcccccchhhhcccccCcEEEccC-CccCccch-hhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCC
Q 007984 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240 (582)
Q Consensus 163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 240 (582)
+.|++++|+++.++..++. ..+++++.+.+ +.++.++. ++..+++|+.|++++|.++.+|.. .+.+|+.|.+.++
T Consensus 157 ~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred hhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence 8899999999888877554 45788888864 67777774 567888899999999988888653 2556666666554
Q ss_pred -cCcccchhhhccCCCcEEEcccC
Q 007984 241 -ALSALPAELGKLSKLGTLDLHSN 263 (582)
Q Consensus 241 -~i~~l~~~l~~~~~L~~L~l~~~ 263 (582)
.++.+| .+..+++|+.+++.++
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcCcCC-CchhCcChhhCcCCCC
Confidence 455666 4677888888887653
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.9e-17 Score=149.60 Aligned_cols=151 Identities=24% Similarity=0.368 Sum_probs=95.8
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+.++.+++.++.+|..+. ++|++|++++|.++.++...|..+++|++|++++|.+..+.+.+|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345555666666655433 456666666666666665556666667777776666666665566666777777777766
Q ss_pred CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGL 541 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 541 (582)
++.+....| ..+++|+.|++++|.++.+ |..|.++++|++|++++|+++++++..+.
T Consensus 92 l~~l~~~~f----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 92 ITELPKSLF----------------------EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp CCCCCTTTT----------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHhHc----------------------cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 655443323 2345666666666666655 34466677777777777777776666555
Q ss_pred cccccceeeccCCCCC
Q 007984 542 LEPSLQALRLDGNPLR 557 (582)
Q Consensus 542 ~~~~L~~L~l~~~~~~ 557 (582)
.+++|+.|++++|++.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 5577777777777764
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6.7e-18 Score=165.22 Aligned_cols=176 Identities=28% Similarity=0.351 Sum_probs=129.3
Q ss_pred ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-ccc-CCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~-~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
.+.+++.++.++.+|..+. +.++.|++++|.++.++. .+. .+++|++|++++|.++.++...|..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3567777777777776543 457777777777777654 344 677777777777777777666677777777777777
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchhh
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 516 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 516 (582)
|.+..+....|..+++|++|+|++|.+..+.+. .+..+++|+.|++++|.++.+|..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----------------------~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN----------------------AFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------------TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHH----------------------HhCCcccCCEEECCCCcCCeeCHHH
Confidence 777777766677777777777777776654433 3456688999999999999887653
Q ss_pred ----cCCCCCCEEeCCCCcCCcCCCcccccccc--cceeeccCCCCCc
Q 007984 517 ----KNLTSLTELDLSDNNISALPPELGLLEPS--LQALRLDGNPLRS 558 (582)
Q Consensus 517 ----~~l~~L~~L~l~~n~l~~l~~~~~~~~~~--L~~L~l~~~~~~~ 558 (582)
..+++|+.|+|++|+|+.+|...+..++. ++.|++++|++..
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 57899999999999999988766655566 4889999999863
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.3e-17 Score=170.94 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=114.9
Q ss_pred ccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..++ .+..+++|++|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 566777777777776664 46667777777777777776654 667777777777777776654 466677777777777
Q ss_pred CcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhh
Q 007984 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (582)
Q Consensus 124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (582)
|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+ +..+++|+.|++++|.+..++ .+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence 7766653 466667777777777776666 456667777777777776666554 666666777777766666653 45
Q ss_pred cCCCCccEEeCCCCcCccC
Q 007984 204 GSLSRLIRLDLHQNRILSI 222 (582)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~ 222 (582)
..+++|+.|++++|.+...
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 6666666666666665543
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-17 Score=150.06 Aligned_cols=169 Identities=31% Similarity=0.447 Sum_probs=117.8
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..+.+++.++.++.+|..+ .+++++|++++|.++.++. .+..+++|++|++++|+++.++...|..+++|++|++++
T Consensus 8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3467777888887777655 4578888888888888765 467888888888888888888777778888888888888
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG- 515 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~- 515 (582)
|.++.++...|..+++|++|++++|.++.+.+..|..+ ++|+.|++++|.++.++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------------~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL----------------------TQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------------TTCCEEECCSSCCSCCCTTT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC----------------------CcCCEEECCCCccceeCHHH
Confidence 88888887777888888888888888877665555555 4555555555555544432
Q ss_pred hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCC
Q 007984 516 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 557 (582)
Q Consensus 516 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~ 557 (582)
+..+++|++|++++|.+.. .+++|+.|++++|.+.
T Consensus 144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 4555555555555554332 1244555555554443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-17 Score=147.81 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=119.3
Q ss_pred hccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEE
Q 007984 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456 (582)
Q Consensus 377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 456 (582)
..+++|++|++++|.+.+++ .+..+++|++|++++|.+++.. .+..+++|++|++++|.++......+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34667888888888888777 5778888888888888776664 46778888888888888877555557788888888
Q ss_pred eCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc-CCccchhhcCCCCCCEEeCCCCcCCcC
Q 007984 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISAL 535 (582)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~n~l~~l 535 (582)
++++|.+++. .+..+..+++|++|++++|. ++.+| .+.++++|++|++++|+++.+
T Consensus 118 ~Ls~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 118 DISHSAHDDS----------------------ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECCSSBCBGG----------------------GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred EecCCccCcH----------------------hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 8888766532 24456778999999999997 88887 688999999999999999988
Q ss_pred CCcccccccccceeeccCCCCCc
Q 007984 536 PPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 536 ~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
+. +..+++|+.|++++|++.+
T Consensus 175 ~~--l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 RG--IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TT--GGGCSSCCEEEECBC----
T ss_pred HH--hccCCCCCEEEeeCcccCC
Confidence 73 4555999999999998764
No 107
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.1e-16 Score=158.79 Aligned_cols=331 Identities=13% Similarity=0.163 Sum_probs=164.6
Q ss_pred Ccccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCC-cccccCCCCCeEEcCCCcCCCCcccc
Q 007984 80 LSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDL 156 (582)
Q Consensus 80 ~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~i~~~l 156 (582)
++.|.. +|.+|.+|+.+.+.. .++.+. .+|.+|++|+.+++..+ +..++ ..+.++.+|+.+.+..+-...-..+|
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 344433 677788888888864 355553 34677778887777643 44443 35566667766655443211112234
Q ss_pred ccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcCCCCccEEeCCCCcCccCCcCCcCCCCCcEEE
Q 007984 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236 (582)
Q Consensus 157 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 236 (582)
..+..++ ..+. .....++..+|.+|++|+.+.+.++...-...++..+.+|+.+++..+--......+.++..|+.+.
T Consensus 137 ~~~~~~~-~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKE-ITIP-EGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSE-EECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred ecccccc-cccC-ccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence 4443222 2221 1233445555666666666665543222122344455555555554431111123344444444443
Q ss_pred cCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCccccc
Q 007984 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRS 315 (582)
Q Consensus 237 l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~~~~~ 315 (582)
+.++... +........+ ++.+.+... +.. -...+.++..++.+.+..+.. .+..
T Consensus 215 ~~~~~~~-i~~~~~~~~~----------------------l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~ 269 (394)
T 4fs7_A 215 FPNSLYY-LGDFALSKTG----------------------VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGG 269 (394)
T ss_dssp CCTTCCE-ECTTTTTTCC----------------------CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECS
T ss_pred cCCCceE-eehhhcccCC----------------------CceEEECCC-ceecccccccccccceeEEcCCCcc-eeec
Confidence 3322111 1111111122 333333221 111 112345556666665544321 1111
Q ss_pred cccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC
Q 007984 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395 (582)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l 395 (582)
..+..+..++.+......+.+
T Consensus 270 ----------------------------------------------------------~~F~~~~~l~~~~~~~~~i~~- 290 (394)
T 4fs7_A 270 ----------------------------------------------------------SLFYNCSGLKKVIYGSVIVPE- 290 (394)
T ss_dssp ----------------------------------------------------------CTTTTCTTCCEEEECSSEECT-
T ss_pred ----------------------------------------------------------cccccccccceeccCceeecc-
Confidence 122224445555544432211
Q ss_pred CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCc
Q 007984 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475 (582)
Q Consensus 396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 475 (582)
..+..+.+|+.+.+.+ .++.+...+|.+|++|+.+++.. .++.+...+|.+|.+|+.+++..+ +..+...+|.+|+
T Consensus 291 -~~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 -KTFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp -TTTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred -cccccccccccccccc-ccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 2456677777777754 35556666677777777777753 366677777777777777777655 6666666777776
Q ss_pred cchhhhhccccccCchhhhccCCCCEE
Q 007984 476 HLQELYLRMQLREAPTDILRLQQLRIL 502 (582)
Q Consensus 476 ~L~~L~l~~~~~~~~~~~~~~~~L~~L 502 (582)
+|+++.+...+..+...+.++++|+.+
T Consensus 367 ~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred CCCEEEECCCCEEhhheecCCCCCcEE
Confidence 666666644444444455555555443
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.7e-17 Score=146.41 Aligned_cols=150 Identities=23% Similarity=0.323 Sum_probs=74.5
Q ss_pred EEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCC-hHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
.++++++.++.+|..+. +.+++|++++|.++.+. ...|..+++|++|++++|.++.+....|..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44445555544444322 23445555555554442 2234555555555555555555554445555555555555555
Q ss_pred CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGL 541 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 541 (582)
++.+.+. .+..+++|++|++++|.++.+ |..|.++++|++|++++|+++++++..+.
T Consensus 93 l~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 93 LENVQHK----------------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CCCCCGG----------------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred cCccCHh----------------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence 4433221 223344555555555555544 33455555555555555555555444444
Q ss_pred cccccceeeccCCCCC
Q 007984 542 LEPSLQALRLDGNPLR 557 (582)
Q Consensus 542 ~~~~L~~L~l~~~~~~ 557 (582)
.+++|+.|++++|++.
T Consensus 151 ~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 151 TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCCEEECCSCCEE
T ss_pred CCCCCCEEEecCcCCc
Confidence 4455555555555544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.8e-17 Score=167.94 Aligned_cols=192 Identities=18% Similarity=0.240 Sum_probs=151.1
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 125 (582)
.+..+.+....+..+. .+..+++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|++++|.
T Consensus 22 ~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 3555666666666442 2456778888999998888875 57888999999999998888765 7888899999999988
Q ss_pred CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (582)
Q Consensus 126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (582)
+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++. +..
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence 88775 677888899999988888877 4588888888888888888877 337888888888888888877655 777
Q ss_pred CCCccEEeCCCCcCccCCcCCcCCCCCcEEEcCCCcCcccc
Q 007984 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246 (582)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~l~ 246 (582)
+++|+.|++++|.+..++ .+..+++|+.|++++|.+...|
T Consensus 174 l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 888888888888887763 5777888888888888777543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=8e-18 Score=156.52 Aligned_cols=165 Identities=20% Similarity=0.256 Sum_probs=79.2
Q ss_pred CccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCc
Q 007984 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (582)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 125 (582)
+++.++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3444455555555443 3444555555555555555544 44555555555555555555444 4555555555555555
Q ss_pred CCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccchhhcC
Q 007984 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (582)
Q Consensus 126 ~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (582)
+..++.... ++|+.|++++|.+..++ .+..+++|++|++++|++++++ .+..+++|++|++++|.+..+ ..+..
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 554433222 45555555555555442 3445555555555555544442 144444444444444444333 23333
Q ss_pred CCCccEEeCCCCcC
Q 007984 206 LSRLIRLDLHQNRI 219 (582)
Q Consensus 206 ~~~L~~L~l~~~~~ 219 (582)
+++|+.|++++|.+
T Consensus 171 l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 171 LKKVNWIDLTGQKC 184 (263)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCCCEEeCCCCcc
Confidence 44444444444433
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=3e-17 Score=147.37 Aligned_cols=152 Identities=32% Similarity=0.440 Sum_probs=131.1
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+.++.+++.++.+|..+ .++|++|++++|.++.++...+..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57788888888888654 4689999999999999888888899999999999999999888878899999999999998
Q ss_pred CCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccc
Q 007984 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGL 541 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~ 541 (582)
++.+.... +..+++|++|++++|.++.++.. +.++++|++|++++|+++++++..+.
T Consensus 88 l~~~~~~~----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 88 LQSLPNGV----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCCCCTTT----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccCHhH----------------------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 87654433 34568899999999999988654 78999999999999999999998777
Q ss_pred cccccceeeccCCCCCc
Q 007984 542 LEPSLQALRLDGNPLRS 558 (582)
Q Consensus 542 ~~~~L~~L~l~~~~~~~ 558 (582)
.+++|+.|++++|++..
T Consensus 146 ~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TCTTCCEEECCSCCBCC
T ss_pred cCCCccEEEecCCCeec
Confidence 77999999999998764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5e-17 Score=151.13 Aligned_cols=171 Identities=23% Similarity=0.264 Sum_probs=150.4
Q ss_pred HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhh
Q 007984 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI 87 (582)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~ 87 (582)
...+..++++++.+++++. +.. +++|++|+++++.++.++ .+..+++|++|++++|.++.++. +
T Consensus 18 l~~l~~l~l~~~~i~~~~~-~~~-------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS-QKE-------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC-HHH-------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred HHHHHHHHhcCCCcccccc-hhh-------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence 4556677888888888872 222 788999999999999887 78899999999999999998876 9
Q ss_pred hCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEc
Q 007984 88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 167 (582)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l 167 (582)
..+++|++|++++|.+..++.... ++|++|++++|.++.++ .+.++++|+.|++++|.+..++ .+..+++|++|++
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence 999999999999999998875433 99999999999999885 6889999999999999999985 7999999999999
Q ss_pred cCCcccccchhhhcccccCcEEEccCCccCccc
Q 007984 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
++|+++++ ..+..+++|+.|++++|.+...+
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999988 44899999999999999887654
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=2.7e-16 Score=155.89 Aligned_cols=323 Identities=13% Similarity=0.183 Sum_probs=177.3
Q ss_pred hhcCCCCCcEEEcCCCCCcccch-hhhCCCCCcEEecCCCcCccCC-hhhhccCCccEEEccCCcCCcCC-cccccCCCC
Q 007984 63 DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNL 139 (582)
Q Consensus 63 ~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L 139 (582)
+|..|.+|+.+.+... ++.|.+ +|.+|.+|+.+++.++ +..+. ..|.++++|+.+.+..+ +..+. ..|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~- 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF- 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC-
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc-
Confidence 4555555555555432 444422 4555555555555433 33332 23445555555444332 22221 12333322
Q ss_pred CeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCcc-chhhcCCCCccEEeCCCCc
Q 007984 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR 218 (582)
Q Consensus 140 ~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 218 (582)
....+.......-..+|..|++|+.+.+..+ +..++..+|.++.+|+.+.+..+ +..+ ..++..+..|+.+.+..+.
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 2222211111111234666666777666543 45566666777777777766655 2222 2355666667666665543
Q ss_pred CccCCcCCcCCCCCcEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCCCCccccCCC
Q 007984 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT 298 (582)
Q Consensus 219 ~~~~~~~l~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~ 298 (582)
.. +......+.+|+.+.+......--...+..+..++.+.+..+... + ....|..+.
T Consensus 220 ~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i---------------------~~~~F~~~~ 276 (394)
T 4fs7_A 220 YY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I---------------------GGSLFYNCS 276 (394)
T ss_dssp CE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E---------------------CSCTTTTCT
T ss_pred eE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e---------------------ecccccccc
Confidence 22 223334456677777654332212234566677777766543211 1 112345566
Q ss_pred CCCeEEccCCCCccccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhc
Q 007984 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378 (582)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~ 378 (582)
.++.+......+ +. ..+..
T Consensus 277 ~l~~~~~~~~~i---~~----------------------------------------------------------~~F~~ 295 (394)
T 4fs7_A 277 GLKKVIYGSVIV---PE----------------------------------------------------------KTFYG 295 (394)
T ss_dssp TCCEEEECSSEE---CT----------------------------------------------------------TTTTT
T ss_pred ccceeccCceee---cc----------------------------------------------------------ccccc
Confidence 666555433211 00 12233
Q ss_pred cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEe
Q 007984 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 457 (582)
+.+|+++.+.++ ++.+.. +|..|.+|+.+++.. .++.+...+|.+|++|+.+.+..+ ++.+...+|.+|++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 566777777653 445544 678888888888864 477777778889999999999765 8888888899999999999
Q ss_pred CCCCcCCCCCCCCCCCCccchhh
Q 007984 458 LSYNIASLPENPPFSSLPHLQEL 480 (582)
Q Consensus 458 l~~n~l~~~~~~~~~~~~~L~~L 480 (582)
+..+ +... ..+|.+|++|+++
T Consensus 373 lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GGGG-GGGBCTTCEEEEE
T ss_pred ECCC-CEEh-hheecCCCCCcEE
Confidence 8765 3333 3468888888764
No 114
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=1.6e-16 Score=156.39 Aligned_cols=183 Identities=14% Similarity=0.219 Sum_probs=135.9
Q ss_pred CChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCC
Q 007984 372 IPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450 (582)
Q Consensus 372 i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 450 (582)
++...+.+.+|+++.+..+ +..++. +|..|++|+.+++.. .++.+...+|.+ .+|+.+.+ .+.++.+...+|.+|
T Consensus 195 I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c 270 (401)
T 4fdw_A 195 LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYC 270 (401)
T ss_dssp ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTC
T ss_pred echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEe-CCCccEEChhHhhCC
Confidence 3333344566777777743 555554 677888888888876 366666667777 67888888 456777888888888
Q ss_pred CCCcEEeCCCCcCC-----CCCCCCCCCCccchhhhhccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCC
Q 007984 451 PMLQILDLSYNIAS-----LPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLT 523 (582)
Q Consensus 451 ~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~ 523 (582)
++|+.+++.++.+. .+...+|.+|++|+.+.+.+.+..+.. .+.+|++|+.+++..+ ++.++ ..|.+| +|+
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 88888888877554 466778888888888888666666554 5778899999999655 77664 458899 999
Q ss_pred EEeCCCCcCCcCCCccccccc-ccceeeccCCCCCcch
Q 007984 524 ELDLSDNNISALPPELGLLEP-SLQALRLDGNPLRSIR 560 (582)
Q Consensus 524 ~L~l~~n~l~~l~~~~~~~~~-~L~~L~l~~~~~~~~~ 560 (582)
++++.+|.+..++...|..++ +++.|++-.+.+..-.
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~ 386 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK 386 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence 999999998888888887764 7889999887655433
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.3e-16 Score=144.00 Aligned_cols=152 Identities=28% Similarity=0.451 Sum_probs=128.3
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..+.+++.++.++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.+.+..|.++++|++|++++
T Consensus 12 ~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 12 SNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp ETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34688999999999998764 789999999999999876 789999999999999999998888899999999999999
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch-h
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-G 515 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~ 515 (582)
|.++.++...|..+++|++|++++|.++.+.+..|.. +++|+.|++++|.++.++. .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD----------------------LHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCSCCCTTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC----------------------CCCCCEEECCCCcCCEECHHH
Confidence 9999999888999999999999999998876655554 4667777777777776654 3
Q ss_pred hcCCCCCCEEeCCCCcCC
Q 007984 516 FKNLTSLTELDLSDNNIS 533 (582)
Q Consensus 516 ~~~l~~L~~L~l~~n~l~ 533 (582)
|..+++|++|++++|.+.
T Consensus 148 ~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCEE
T ss_pred HhCCCCCCEEEeCCCCcC
Confidence 667777777777777654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.2e-16 Score=141.96 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-CccccccCCCCcEEEccCC
Q 007984 92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVEGN 170 (582)
Q Consensus 92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~L~l~~~ 170 (582)
+|++|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3333333333333333 2333344444444444333221 33334444444444443332 2233444444444444444
Q ss_pred cccccchhhhcccccCcEEEccCCc-cCccchhhcCCCCccEEeCCCCcCcc
Q 007984 171 KLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRILS 221 (582)
Q Consensus 171 ~i~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~ 221 (582)
.++......++.+++|++|++++|. +..++ .+..+++|+.|++++|.+..
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 4443333333334444444444443 33332 23333444444444444333
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=142.78 Aligned_cols=153 Identities=26% Similarity=0.383 Sum_probs=126.8
Q ss_pred ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 434 (582)
+..+.+++.++.++.+|..+ ...+++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 34568999999999998866 4567999999999998743 5889999999999999999998888999999999999
Q ss_pred CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-c
Q 007984 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-P 513 (582)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~ 513 (582)
++|.++.+....|..+++|++|++++|.++++.+..|..+ ++|+.|++++|.++.+ |
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL----------------------SSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC----------------------TTCSEEECTTSCCCCBCT
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC----------------------ccCCEEECCCCcCCEECH
Confidence 9999999998889999999999999999988766555544 5667777777777765 4
Q ss_pred hhhcCCCCCCEEeCCCCcCC
Q 007984 514 EGFKNLTSLTELDLSDNNIS 533 (582)
Q Consensus 514 ~~~~~l~~L~~L~l~~n~l~ 533 (582)
..|..+++|++|++++|.+.
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEE
T ss_pred HHhcCCCCCCEEEecCcCCc
Confidence 55667777777777777654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.3e-16 Score=141.66 Aligned_cols=154 Identities=31% Similarity=0.409 Sum_probs=135.6
Q ss_pred cccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeC
Q 007984 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434 (582)
Q Consensus 356 ~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 434 (582)
.+..+.+++.++.++.+|..+. ++|+.|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++
T Consensus 18 ~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 18 SCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3556789999999999998664 8999999999999987 457899999999999999999999888899999999999
Q ss_pred CCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCccch
Q 007984 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514 (582)
Q Consensus 435 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 514 (582)
++|.++.++...|..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-----------------------p~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-----------------------PRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-----------------------CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccccc-----------------------CcccccCCCCCEEECCCCcCCccCH
Confidence 99999999988899999999999999987643 2345677899999999999998874
Q ss_pred -hhcCCCCCCEEeCCCCcCCc
Q 007984 515 -GFKNLTSLTELDLSDNNISA 534 (582)
Q Consensus 515 -~~~~l~~L~~L~l~~n~l~~ 534 (582)
.+..+++|++|++++|.+..
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCT
T ss_pred HHHhCCCCCCEEEeeCCCccC
Confidence 48889999999999998874
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=2.1e-16 Score=154.65 Aligned_cols=162 Identities=30% Similarity=0.371 Sum_probs=137.8
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhh-CCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (582)
+.++++++.++.+|..+. +.++.|++++|.++.++...+. .+++|++|++++|.++.+....|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 678899999999887554 5689999999999988877777 8999999999999999998888999999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc-chhhcCCCCCCEEeCCCCcCCcCCCccc
Q 007984 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELG 540 (582)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 540 (582)
.++.+.... +..+++|+.|++++|.+..+ +..|.++++|++|+|++|+|+.+|..++
T Consensus 99 ~l~~~~~~~----------------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 99 HLHTLDEFL----------------------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CCCEECTTT----------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred cCCcCCHHH----------------------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 887654433 34568899999999999977 5679999999999999999999999876
Q ss_pred ---ccccccceeeccCCCCCcchHHHhccch
Q 007984 541 ---LLEPSLQALRLDGNPLRSIRRTILDRGT 568 (582)
Q Consensus 541 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 568 (582)
..+++|+.|++++|.+..++...|....
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 4469999999999999999988776543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.7e-16 Score=151.82 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=85.1
Q ss_pred cCCccEEEcCCCcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCC-EeeCCCCCCccCCCccccCCCCCcEE
Q 007984 379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL 456 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L 456 (582)
+++|+++++++|.++.++. +|..|++|+.+++.++ ++.++..+|.+|++|+ .+++.+ .++.+...+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6788888888888888776 6888888888888886 7778888888888888 888887 7888888888888888888
Q ss_pred eCCCCcCCCCCCCCCCCCccchhhh
Q 007984 457 DLSYNIASLPENPPFSSLPHLQELY 481 (582)
Q Consensus 457 ~l~~n~l~~~~~~~~~~~~~L~~L~ 481 (582)
++++|.+..+...+|.+|++|++++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 8888888888888888888887764
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5e-17 Score=156.99 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCch-hhhccCCCC-EEecCCCcCCccc-hhhcCCCCCCEEe
Q 007984 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT-DILRLQQLR-ILDLSQNSLQSIP-EGFKNLTSLTELD 526 (582)
Q Consensus 450 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~-~L~l~~~~l~~l~-~~~~~l~~L~~L~ 526 (582)
|++|+.+++++|.++.+...+|.+|++|+++.+..++..++. .+.++++|+ .+++.+ .++.++ ..|.+|++|++++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 556666666665565555555666655555555334444433 455667777 777777 666664 4588888888888
Q ss_pred CCCCcCCcCCCcccccccccceeec
Q 007984 527 LSDNNISALPPELGLLEPSLQALRL 551 (582)
Q Consensus 527 l~~n~l~~l~~~~~~~~~~L~~L~l 551 (582)
+.+|+++.++..+|..|++|+.|+.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 8888888888888888888888764
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.8e-18 Score=176.74 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=105.2
Q ss_pred ccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCC-------------Cc-ccchhhhCCCCCcEEe-cCCCcCccC
Q 007984 42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI 106 (582)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~~~~l 106 (582)
+.+++|+.|+++++.++.+|+.++.+++|+.|+++++. .. .+|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34666666666666666666666666666666665442 11 2233444455555554 333322211
Q ss_pred ChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhcccccC
Q 007984 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186 (582)
Q Consensus 107 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 186 (582)
+. +.+++|.+..++ ...|+.|++++|.+..+|. +..+++|+.|++++|.++.++. .++.+++|
T Consensus 426 ~~----------l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L 488 (567)
T 1dce_A 426 RS----------KFLLENSVLKME-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCL 488 (567)
T ss_dssp HH----------HHHHHHHHHHHH-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTC
T ss_pred hh----------hhhhcccccccC-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCC
Confidence 11 111111111111 1135555555555555544 5555555555555555554433 25555555
Q ss_pred cEEEccCCccCccchhhcCCCCccEEeCCCCcCccC--CcCCcCCCCCcEEEcCCCcCcccchh----hhccCCCcEEE
Q 007984 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLD 259 (582)
Q Consensus 187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~l~~~----l~~~~~L~~L~ 259 (582)
+.|++++|.+..+| .+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|+
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55555555555555 555666666666666666655 55666666666666666666644332 33467777765
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=1.1e-15 Score=150.54 Aligned_cols=202 Identities=14% Similarity=0.222 Sum_probs=167.0
Q ss_pred cccEEEecCCCCccCChh-hhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
.++.+.+.+ .+..++.. +..|++|+.+++.++.++.++.....+.+|+.+.+.. .++.+...+|.+|++|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 456666665 55555544 4458999999999999999887544479999999984 58888888999999999999986
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccc------cC-chhhhccCCCCEEecCCCcC
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR------EA-PTDILRLQQLRILDLSQNSL 509 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~------~~-~~~~~~~~~L~~L~l~~~~l 509 (582)
.++.+...+|.+ .+|+.+.+. +.+..+...+|.+|++|+++.+..+.. .+ ...+.+|++|+.+++. +.+
T Consensus 236 -~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 -NVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp -TCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred -CccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 488899999988 789999995 458888889999999999999944332 23 3468899999999999 458
Q ss_pred Cccc-hhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccc
Q 007984 510 QSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG 567 (582)
Q Consensus 510 ~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 567 (582)
+.++ ..|.+|++|++++|..+ ++.++..+|..| +|+.+++.+|....+...+|..+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 8775 45999999999999665 889999999998 99999999999988888888764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.6e-17 Score=171.09 Aligned_cols=191 Identities=18% Similarity=0.189 Sum_probs=127.2
Q ss_pred HhhcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCC--------------ccchhHhhcCCCCCcEE
Q 007984 8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL 73 (582)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--------------i~~~~~~~~~~~~L~~L 73 (582)
.+.++.|++++++++.+|..+.. +++|++|+++++. ....|+.+..+++|+.|
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence 45678999999999999988854 6788888886653 22445677888888888
Q ss_pred E-cCCCCCcccch------hhhC--CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEc
Q 007984 74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (582)
Q Consensus 74 ~-L~~~~~~~l~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l 144 (582)
+ ++.+.+..++. .+.. ...|++|++++|.++.+|. +..+++|++|++++|.++.+|..+.++++|+.|++
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 8 56554443322 1111 1257777777777777765 77777777777777777777777777777777777
Q ss_pred CCCcCCCCccccccCCCCcEEEccCCcccccc-hhhhcccccCcEEEccCCccCccchh----hcCCCCccEEe
Q 007984 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLD 213 (582)
Q Consensus 145 ~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~ 213 (582)
++|.+..+| .+..+++|++|++++|+++.+. +..++.+++|+.|++++|.+...+.. +..+++|+.|+
T Consensus 494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777766 6667777777777777766664 44466666666666666666544322 22245555554
No 125
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=2.8e-14 Score=141.39 Aligned_cols=82 Identities=13% Similarity=0.290 Sum_probs=46.0
Q ss_pred cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccc
Q 007984 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477 (582)
Q Consensus 398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 477 (582)
+|..|..|+.+.+.++ +..+...+|.+|++|+.+.+. +.+..+...+|.+|.+|+.+++..+ ++.+...+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4556666666666432 233444556666666666664 3455666666666666666666543 444555555555544
Q ss_pred hhhhh
Q 007984 478 QELYL 482 (582)
Q Consensus 478 ~~L~l 482 (582)
+++.+
T Consensus 337 ~~i~i 341 (394)
T 4gt6_A 337 ERIAI 341 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 44444
No 126
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.60 E-value=5.4e-14 Score=139.30 Aligned_cols=104 Identities=14% Similarity=0.301 Sum_probs=80.3
Q ss_pred hhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcE
Q 007984 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455 (582)
Q Consensus 376 ~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 455 (582)
+..+..|+.+.+.+....--..+|..|++|+.+.+. +.++.++..+|.+|.+|+.+++.. .++.|...+|.+|.+|+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCE
Confidence 345788888888765432223368889999999985 567778888899999999999975 488888889999999999
Q ss_pred EeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984 456 LDLSYNIASLPENPPFSSLPHLQELYL 482 (582)
Q Consensus 456 L~l~~n~l~~~~~~~~~~~~~L~~L~l 482 (582)
+.+..+ ++.+...+|.+|++|+++.+
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 999764 77777777777766666555
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.1e-15 Score=130.22 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=67.7
Q ss_pred CCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc-CCcccccCCCCCeEEc
Q 007984 68 PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKA 144 (582)
Q Consensus 68 ~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l 144 (582)
++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44444444444444 4444444445555555555544444 334445555555555555544 3333444555555555
Q ss_pred CCCcCCCCc--cccccCCCCcEEEccCCcccccch---hhhcccccCcEEEccCCccCccc
Q 007984 145 SNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP 200 (582)
Q Consensus 145 ~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~ 200 (582)
++|.+..++ ..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 555555443 345555555556655555555544 34555666666666666555544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=4.3e-15 Score=128.19 Aligned_cols=132 Identities=19% Similarity=0.157 Sum_probs=60.6
Q ss_pred CCCcEEecCCCcCc--cCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-CccccccCCCCcEEEc
Q 007984 91 HMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDV 167 (582)
Q Consensus 91 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l~~~~~L~~L~l 167 (582)
++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. ++..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44444455444444 4444444444445555544444444 344444444555554444443 3333334444555555
Q ss_pred cCCcccccch-hhhcccccCcEEEccCCccCccch----hhcCCCCccEEeCCCCcCccCC
Q 007984 168 EGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSIP 223 (582)
Q Consensus 168 ~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~ 223 (582)
++|.++.++. ..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 4444444322 234444444455554444444433 3444444455544444444433
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.5e-15 Score=128.45 Aligned_cols=135 Identities=22% Similarity=0.218 Sum_probs=96.2
Q ss_pred CCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChh-hhccCCc
Q 007984 38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATAL 116 (582)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L 116 (582)
...|.++.+|++|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.+..++.. +..+++|
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556778888888888888887754333344888888888888776 5677778888888888887777644 3677788
Q ss_pred cEEEccCCcCCcCCc--ccccCCCCCeEEcCCCcCCCCccc----cccCCCCcEEEccCCccc
Q 007984 117 VKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT 173 (582)
Q Consensus 117 ~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~i~~~----l~~~~~L~~L~l~~~~i~ 173 (582)
++|++++|.+..+|. .+..+++|+.|++++|.+..++.. +..+++|+.|+++++...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888777776665 566777777777777777666553 666666666666665544
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=3.6e-15 Score=158.65 Aligned_cols=195 Identities=19% Similarity=0.235 Sum_probs=101.6
Q ss_pred hcCceecCCCCCCCcchHHHhhhccccCCCccccccCccEEEcCCCCccchhHhhcCCCCCcEEEcCCCCCcccchhhhC
Q 007984 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE 89 (582)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 89 (582)
.+..++++.+.+..+|..+...+.- .--.+..++++.+.+...++.+..++.|+.|+|++|.+..++..+..
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGG
T ss_pred ccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcC
Confidence 3556666666666655544321000 00012222333333443455677788888888888888877777777
Q ss_pred CCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccC
Q 007984 90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169 (582)
Q Consensus 90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~ 169 (582)
+++|++|+|++|.+..+|..+..+++|++|++++|.++.+|..+.++++|++|++++|.+..+|..|..+++|++|++++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 88888888888888888877888888888888888888888778888888888888888888887788888888888888
Q ss_pred Ccccccchhhhccccc-CcEEEccCCccCccchhhcCCCCccEEeCCCC
Q 007984 170 NKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217 (582)
Q Consensus 170 ~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 217 (582)
|.+....+..+..... ...+++.+|.+.... ...|+.|+++.+
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence 8877655554443321 223456666553211 134556666655
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.6e-15 Score=123.80 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=58.1
Q ss_pred cCccEEEcCCCCcc--chhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCcc-CChhhhccCCccEEEc
Q 007984 45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC 121 (582)
Q Consensus 45 ~~l~~L~l~~~~i~--~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l 121 (582)
+++++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666666666665 5555555666666666666665555 445555556666665555554 4444444555555555
Q ss_pred cCCcCCcCC--cccccCCCCCeEEcCCCcCCCC
Q 007984 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSL 152 (582)
Q Consensus 122 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~i 152 (582)
++|.+..++ ..+..+++|++|++++|.+..+
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 555555432 3444444444444444444433
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.5e-14 Score=122.01 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=78.8
Q ss_pred CCCCCcEEEcCCCCCc--ccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCc-CCcccccCCCCCeE
Q 007984 66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDF 142 (582)
Q Consensus 66 ~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L 142 (582)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3456777777777776 5666666777777777777776666 556666777777777776665 55555556666666
Q ss_pred EcCCCcCCCCc--cccccCCCCcEEEccCCcccccch---hhhcccccCcEEEc
Q 007984 143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIA 191 (582)
Q Consensus 143 ~l~~~~~~~i~--~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l 191 (582)
++++|.+..++ ..+..+++|++|++++|+++.++. ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666666543 456666666666666666655544 33444555555444
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.9e-13 Score=120.25 Aligned_cols=106 Identities=27% Similarity=0.393 Sum_probs=63.4
Q ss_pred cEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (582)
Q Consensus 360 ~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 439 (582)
+.+++.++.++.+|..+ .+++++|++++|.++.+|..+..+++|++|++++|.++.++...|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 45666666666665543 2456666666666666665566666666666666666666555556666666666666666
Q ss_pred ccCCCccccCCCCCcEEeCCCCcCCCCC
Q 007984 440 RQVPSDGFKDIPMLQILDLSYNIASLPE 467 (582)
Q Consensus 440 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 467 (582)
+.+.+..|..+++|++|++++|.++.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 6655555556666666666666555443
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=8.6e-14 Score=122.52 Aligned_cols=125 Identities=25% Similarity=0.341 Sum_probs=112.5
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+.++++++.++.+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|.++.+....|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678999999999987553 68999999999999887 568999999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCC
Q 007984 463 ASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQ 510 (582)
Q Consensus 463 l~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~ 510 (582)
++.+.+.+|..+++|+.|++ .+.+..++. .+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999889999999999999 777777776 4778999999999999875
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=1.3e-13 Score=121.50 Aligned_cols=128 Identities=23% Similarity=0.313 Sum_probs=79.4
Q ss_pred ccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCCc--cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
.+.++++++.++.+|..+. .++++|++++|.++.++. .+..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3566666666666666443 266666776666666554 256666666666666666666555566666666666666
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 510 (582)
|+++.+....|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------------------EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------------------TTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------------------hcCCCCCEEEeCCCCcc
Confidence 66666666556666666666666666654433322 33456666666666655
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.2e-14 Score=122.84 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=84.7
Q ss_pred hcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCccc-ccCCCCCeE
Q 007984 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDF 142 (582)
Q Consensus 64 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L 142 (582)
+..+.+|++|++++|.++.++......++|++|++++|.+..+ ..+..+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4566777777777777776644333334777777777777765 45666777777777777777665433 667777777
Q ss_pred EcCCCcCCCCcc--ccccCCCCcEEEccCCcccccchh---hhcccccCcEEEccCCcc
Q 007984 143 KASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL 196 (582)
Q Consensus 143 ~l~~~~~~~i~~--~l~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~ 196 (582)
++++|.+..++. .+..+++|++|++++|.+..++.. .+..+++|+.++++++..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777766655 566666666666666666655443 355555555555555544
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=5e-13 Score=116.18 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=45.0
Q ss_pred cEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCc
Q 007984 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 462 (582)
+.++++++.++.+|..+ .++|++|++++|+++.++...+..+++|++|++++|.++.++...|..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 55666666666655432 2456666666666655555555555566666666555555554444555555555555554
Q ss_pred CCC
Q 007984 463 ASL 465 (582)
Q Consensus 463 l~~ 465 (582)
+++
T Consensus 88 l~~ 90 (177)
T 2o6r_A 88 LQS 90 (177)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=4.5e-13 Score=116.48 Aligned_cols=128 Identities=32% Similarity=0.434 Sum_probs=69.2
Q ss_pred CEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccc
Q 007984 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485 (582)
Q Consensus 406 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 485 (582)
+.+++++++++.++.. -.++|++|++++|.+..++...|..+++|++|++++|.++.+.+..|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 72 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF-------------- 72 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--------------
Confidence 4555655555555432 23556666666666665555555556666666666665554432222
Q ss_pred cccCchhhhccCCCCEEecCCCcCCccchh-hcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCc
Q 007984 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 558 (582)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~ 558 (582)
..+++|+.|++++|.++.++.. +..+++|++|++++|+++.+|+..+..+++|+.|++++|++..
T Consensus 73 --------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 --------DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp --------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 2334555555555555555432 4555556666666665555555554444556666666655543
No 139
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.49 E-value=1.7e-12 Score=128.03 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=46.6
Q ss_pred ccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccch
Q 007984 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478 (582)
Q Consensus 399 l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 478 (582)
+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..+...+|..|.+|+.+.+.++.+..+...+|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344444444444332 3333333444444444444432 24444444444444444444444444444444444444444
Q ss_pred hhhhccccccCch-hhhccCCCCEEecC
Q 007984 479 ELYLRMQLREAPT-DILRLQQLRILDLS 505 (582)
Q Consensus 479 ~L~l~~~~~~~~~-~~~~~~~L~~L~l~ 505 (582)
++.+...+..+.. .+.+|++|+.+.+.
T Consensus 314 ~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 314 SVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred EEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 4444333333322 34444555555554
No 140
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.49 E-value=2.2e-12 Score=127.21 Aligned_cols=308 Identities=12% Similarity=0.123 Sum_probs=150.2
Q ss_pred ccccCCCCcEEEccCCcccccchhhhcccccCcEEEccCCccCccc-hhhcCCCCccEEeCCCCcCccC-CcCCcCCCCC
Q 007984 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSL 232 (582)
Q Consensus 155 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L 232 (582)
++....+|+.+.+.. .++.|+..+|.+|.+|+.+.+..+ +..+. .+|..+ +|+.+.+..+ +..+ ..+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 466677888888865 588888888999999998888755 44443 355555 5666666543 3322 2233333 55
Q ss_pred cEEEcCCCcCcccchhhhccCCCcEEEcccCcccccchhhhcccccEEEccCCCCCC-CCccccCCCCCCeEEccCCCCc
Q 007984 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR 311 (582)
Q Consensus 233 ~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~~~~~L~~L~l~~~~~~ 311 (582)
+.+.+.++....-...+.. .+++.+.+ ..+ +.. -...+..+.+++.+.+......
T Consensus 116 ~~i~lp~~~~~i~~~~F~~-~~l~~~~~----------------------~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYN-SSVKRIVI----------------------PKS-VTTIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp SEEECCTTCCEECTTTTTT-CCCCEEEE----------------------CTT-CCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred ccccCCCcccccccccccc-ceeeeeec----------------------cce-eeccccchhcccccccccccccccce
Confidence 5555543321111111211 12333322 211 111 1233556667776666554321
Q ss_pred cccccccCCCcHHHHHHHHhcCCCCCccccccchhhHHhhhhcccccccEEEecCCCCccCChhhhccCCccEEEcCCCc
Q 007984 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391 (582)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~ 391 (582)
......+ ... ........+..+..+..+.+....
T Consensus 172 ~~~~~~~--------------------------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 172 YVAENYV--------------------------------------------LYN--KNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp EEEETTE--------------------------------------------EEE--TTSSEEEECCTTCCCSEEECCTTC
T ss_pred eecccce--------------------------------------------ecc--cccceeccccccccccccccccce
Confidence 1110000 000 000111112223344555444432
Q ss_pred CCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCC
Q 007984 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471 (582)
Q Consensus 392 l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 471 (582)
.......+..+.+|+.+.+.. .+..+....|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..+...+|
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred eEEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 222223455666677776643 344455555667777777777544 66666666777777777776543 444555555
Q ss_pred CCCccchhhhh-ccccccCch-hhhccCCCCEEecCCCcCCccc-hhhcCCCCCCEEeCCCCcCCcCCCccccc
Q 007984 472 SSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLL 542 (582)
Q Consensus 472 ~~~~~L~~L~l-~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 542 (582)
.+|++|+++.+ .+.+..+.. .+.+|++|+.+++..+ ++.+. .+|.+|.+|+++.+..+ ++.+...+|.+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 55555555554 222333322 3444444444444322 33332 23444444444444332 44444444444
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.3e-13 Score=121.38 Aligned_cols=109 Identities=28% Similarity=0.414 Sum_probs=99.8
Q ss_pred ccccEEEecCCCCccCChh--hhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEee
Q 007984 357 VTSKELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~--~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 433 (582)
..++++++.++.+..++.. +..+++|++|++++|.++.+ |..+..+++|++|++++|++++++...|..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4789999999999988764 77899999999999999987 56899999999999999999998888889999999999
Q ss_pred CCCCCCccCCCccccCCCCCcEEeCCCCcCCC
Q 007984 434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (582)
Q Consensus 434 l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 465 (582)
+++|+++.+.+..+..+++|++|++++|.+..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999999888889999999999999998864
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=3.2e-13 Score=143.74 Aligned_cols=134 Identities=29% Similarity=0.357 Sum_probs=84.7
Q ss_pred hHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCC
Q 007984 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499 (582)
Q Consensus 420 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L 499 (582)
...+..+++|+.|++++|.+..++.. +..+++|++|+|++|.++ .++..+..+++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L 272 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLT-----------------------ELPAEIKNLSNL 272 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCS-----------------------CCCGGGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCc-----------------------ccChhhhCCCCC
Confidence 34455666666666666666655544 335666666666666554 234455667777
Q ss_pred CEEecCCCcCCccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccc-hHHHHHHHHhc
Q 007984 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG-TKAVLKYLKDK 578 (582)
Q Consensus 500 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 578 (582)
+.|+|++|.|+.+|..+.++++|++|+|++|+|+.+|..+ ..+++|+.|+|++|++....+..+... ......++.++
T Consensus 273 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 273 RVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp CEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhh-hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 7888888877777777777778888888888777777763 334778888888887776666666543 33333455554
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=9.4e-15 Score=129.68 Aligned_cols=127 Identities=29% Similarity=0.328 Sum_probs=85.0
Q ss_pred CccEEEcCCC--CccchhHhhcCCCCCcEEEcCCCCCcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccC
Q 007984 46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS 123 (582)
Q Consensus 46 ~l~~L~l~~~--~i~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 123 (582)
.++...+++. .++.++..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 4455555544 45556667777777777777777777766 66777777777777777777766666667777777777
Q ss_pred CcCCcCCcccccCCCCCeEEcCCCcCCCCcc--ccccCCCCcEEEccCCcccc
Q 007984 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV 174 (582)
Q Consensus 124 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~--~l~~~~~L~~L~l~~~~i~~ 174 (582)
|.+..+| .+.++++|+.|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7776665 46666677777777776665543 46666667777776666543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.7e-14 Score=127.96 Aligned_cols=116 Identities=23% Similarity=0.285 Sum_probs=80.5
Q ss_pred CcccchhhhCCCCCcEEecCCCcCccCChhhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCCCccccccC
Q 007984 80 LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC 159 (582)
Q Consensus 80 ~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~ 159 (582)
++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++|.+..++ .+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 4455557777888888888877777776 677777788888877777777766666677777777777777664 56666
Q ss_pred CCCcEEEccCCcccccch-hhhcccccCcEEEccCCccC
Q 007984 160 SKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN 197 (582)
Q Consensus 160 ~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~ 197 (582)
++|++|++++|+++.++. ..+..+++|++|++++|.+.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 777777777776665543 34566666666666666653
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=1.2e-11 Score=106.41 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=88.2
Q ss_pred ccccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (582)
Q Consensus 357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (582)
+..+.++++++.++.+|..+ .+++++|++++|.++.++ ..+..+++|++|++++|+++.++...|..+++|++|+++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35578888888888888766 378888999998888874 467888889999999888888888778888899999998
Q ss_pred CCCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984 436 NNPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (582)
Q Consensus 436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (582)
+|+++.++...|..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888888877888888999999888765
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.7e-11 Score=104.39 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=85.6
Q ss_pred cccEEEecCCCCccCChhhhccCCccEEEcCCCcCCcCC-ccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCC
Q 007984 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436 (582)
Q Consensus 358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 436 (582)
..+.+++.++.++.+|..+. ++|++|++++|.++.++ ..+..+++|++|++++|+++.++...|..+++|++|++++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34678888888888887664 78888888888888864 4678888888888888888888877778888888888888
Q ss_pred CCCccCCCccccCCCCCcEEeCCCCcCC
Q 007984 437 NPLRQVPSDGFKDIPMLQILDLSYNIAS 464 (582)
Q Consensus 437 ~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 464 (582)
|++..++...|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888888777888888888888888765
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=5e-11 Score=102.39 Aligned_cols=106 Identities=27% Similarity=0.369 Sum_probs=89.4
Q ss_pred CccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (582)
Q Consensus 381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (582)
..+.++++++.++.+|..+. ++|++|++++|.++.+....|..+++|++|++++|+++.++...|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999987653 8899999999999999888899999999999999999999988889999999999999
Q ss_pred CcCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCC
Q 007984 461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510 (582)
Q Consensus 461 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 510 (582)
|.++.+.+..|..+ ++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNL----------------------KSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTC----------------------TTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCC----------------------CCCCEEEeCCCCCC
Confidence 99887766555544 56666777776655
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=4.1e-11 Score=103.26 Aligned_cols=107 Identities=22% Similarity=0.318 Sum_probs=89.5
Q ss_pred ccEEEcCCCcCCcCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCCC
Q 007984 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461 (582)
Q Consensus 382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 461 (582)
-+.++++++.++.+|..+. ++|++|++++|.++++++..|..+++|++|++++|+++.++...|..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3789999999999998664 88999999999999998888999999999999999999998888899999999999999
Q ss_pred cCCCCCCCCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCcCCcc
Q 007984 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI 512 (582)
Q Consensus 462 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 512 (582)
.++.+....|.. +++|+.|++++|.+...
T Consensus 92 ~l~~l~~~~~~~----------------------l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDN----------------------LKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTT----------------------CTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhcc----------------------ccCCCEEEeCCCCcccc
Confidence 988766544544 45666677777766543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5e-12 Score=123.17 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=102.7
Q ss_pred ccCccEEEcCCCCccch-----hHhhc-CCCCCcEEEcCCCCCcc--cchhhhCCCCCcEEecCCCcCccC-----Chhh
Q 007984 44 AVDLQKLILAHNNIEKL-----KEDLR-NLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIMKI-----PDEI 110 (582)
Q Consensus 44 ~~~l~~L~l~~~~i~~~-----~~~~~-~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~l-----~~~~ 110 (582)
.+.+++|++++|.++.. ...+. ..++|++|+|++|.++. +......+++|++|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35688888888877632 22333 23678888888887763 222223455788888888877632 2222
Q ss_pred -hccCCccEEEccCCcCCc-----CCcccccCCCCCeEEcCCCcCCC-----CccccccCCCCcEEEccCCcccccchhh
Q 007984 111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL 179 (582)
Q Consensus 111 -~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~~~~~~~ 179 (582)
...++|++|++++|.+.. ++..+..+++|++|++++|.+.+ ++..+...++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245778888888887753 33445677788888888887763 3455677788888888888887554333
Q ss_pred ----hcccccCcEEEccCCccCc
Q 007984 180 ----IASWTMLTELIASKNLLNG 198 (582)
Q Consensus 180 ----~~~~~~L~~L~l~~~~~~~ 198 (582)
+...+.|++|++++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 3456788888888888754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=4.6e-13 Score=130.49 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=95.7
Q ss_pred cCCccEEEcCCCcCCcC-----Ccccc-CCCCCCEEEcccCcCCCCChHHh-hCCCCCCEeeCCCCCCccCCCccc----
Q 007984 379 AGEITKLDLSRNSIQEL-----PPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF---- 447 (582)
Q Consensus 379 ~~~L~~L~l~~~~l~~l-----~~~l~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~---- 447 (582)
.+.|++|++++|.++.. ...+. .+++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 57899999999998762 22233 34789999999999876444333 346789999999999876544333
Q ss_pred -cCCCCCcEEeCCCCcCCCCCCCC----CCCCccchhhhh-cccccc-----CchhhhccCCCCEEecCCCcCCc-----
Q 007984 448 -KDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYL-RMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 511 (582)
Q Consensus 448 -~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l-~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~----- 511 (582)
...++|++|++++|.+++..... +..+++|++|++ .+.+.. +...+..+++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35788999999999876432211 234455555555 332221 12234444555555555555542
Q ss_pred cchhhcCCCCCCEEeCCCCcCC
Q 007984 512 IPEGFKNLTSLTELDLSDNNIS 533 (582)
Q Consensus 512 l~~~~~~l~~L~~L~l~~n~l~ 533 (582)
++..+..+++|++|+|++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 2233444555555555555554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=3.2e-09 Score=103.08 Aligned_cols=105 Identities=22% Similarity=0.214 Sum_probs=93.1
Q ss_pred ccEEEecCC-CCccCChhhhccCCccEEEcCC-CcCCcCCc-cccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCC
Q 007984 359 SKELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435 (582)
Q Consensus 359 l~~l~l~~~-~~~~i~~~~~~~~~L~~L~l~~-~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 435 (582)
-..+++.+. .++.+|. +..+++|++|+|++ |.++.++. .|..+++|++|+|++|.++.+++..|..+++|++|+|+
T Consensus 10 ~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 10 SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 356788888 8999999 88889999999996 99999875 68999999999999999999988889999999999999
Q ss_pred CCCCccCCCccccCCCCCcEEeCCCCcCCC
Q 007984 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASL 465 (582)
Q Consensus 436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 465 (582)
+|+++.++...|..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999999888777766 9999999997754
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=3.2e-09 Score=103.07 Aligned_cols=98 Identities=28% Similarity=0.358 Sum_probs=88.4
Q ss_pred cEEEcCCC-cCCcCCccccCCCCCCEEEccc-CcCCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984 383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (582)
Q Consensus 383 ~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (582)
..++.+++ .++.+|. +..+++|++|+|++ |.++.++...|..+++|+.|+|++|.++.+.+..|..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688887 8999999 99999999999996 999999988899999999999999999999998899999999999999
Q ss_pred CcCCCCCCCCCCCCccchhhhh
Q 007984 461 NIASLPENPPFSSLPHLQELYL 482 (582)
Q Consensus 461 n~l~~~~~~~~~~~~~L~~L~l 482 (582)
|.++.+.+..|..++ |+.|++
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEEC
T ss_pred CccceeCHHHcccCC-ceEEEe
Confidence 999988777777666 777777
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.9e-08 Score=96.89 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=79.6
Q ss_pred hhhccCCccEEEccCCcCCcCCcccccCCCCCeEEcCCCcCCC-Ccccc--ccCCCCcEEEccCC--c------ccccch
Q 007984 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDL--ADCSKMSKLDVEGN--K------LTVLSN 177 (582)
Q Consensus 109 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-i~~~l--~~~~~L~~L~l~~~--~------i~~~~~ 177 (582)
.+..+|+|+.|+++++.-..++. + ..++|++|++..|.+.. ....+ ..+++|++|++..+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34455666666666553122322 2 25666666666655441 11122 24666666666321 1 111111
Q ss_pred hh-hcccccCcEEEccCCccCc-cchhh---cCCCCccEEeCCCCcCcc-----CCcCCcCCCCCcEEEcCCCcCcc-cc
Q 007984 178 NL-IASWTMLTELIASKNLLNG-MPETI---GSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSA-LP 246 (582)
Q Consensus 178 ~~-~~~~~~L~~L~l~~~~~~~-~~~~l---~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~-l~ 246 (582)
.. ...+++|++|.+.+|.+.. ....+ ..+++|++|+++.|.+.. ++..+..+++|+.|++++|.++. ..
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 10 1235677777777766532 11111 246788888888887763 33444567888888888888772 22
Q ss_pred hhhhc-cCCCcEEEcccCc
Q 007984 247 AELGK-LSKLGTLDLHSNQ 264 (582)
Q Consensus 247 ~~l~~-~~~L~~L~l~~~~ 264 (582)
..+.. + ...++++.++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 22332 2 3456666655
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=1e-08 Score=89.04 Aligned_cols=113 Identities=13% Similarity=0.155 Sum_probs=66.4
Q ss_pred hHhhcCCCCCcEEEcCCC-CCc-----ccchhhhCCCCCcEEecCCCcCcc-----CChhhhccCCccEEEccCCcCCc-
Q 007984 61 KEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKE- 128 (582)
Q Consensus 61 ~~~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~- 128 (582)
...+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. +...+...++|++|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345566666666776666 655 233355556666677766666652 33344455666666666666652
Q ss_pred ----CCcccccCCCCCeEEc--CCCcCCC-----CccccccCCCCcEEEccCCccc
Q 007984 129 ----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLT 173 (582)
Q Consensus 129 ----l~~~~~~~~~L~~L~l--~~~~~~~-----i~~~l~~~~~L~~L~l~~~~i~ 173 (582)
+...+...++|++|++ ++|.+.. +.+.+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555666666666 5566552 3445556666777777666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=2.3e-08 Score=86.83 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=87.3
Q ss_pred ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCcc-----cchhhhCCCCCcEEecCCCcCcc-----CC
Q 007984 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP 107 (582)
Q Consensus 44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~-----l~ 107 (582)
++.|++|++++| .+. .+.+.+...++|++|+|++|.+.. +...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 788999999998 876 345678888999999999999873 44567778899999999999883 45
Q ss_pred hhhhccCCccEEEc--cCCcCCc-----CCcccccCCCCCeEEcCCCcCC
Q 007984 108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT 150 (582)
Q Consensus 108 ~~~~~~~~L~~L~l--~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~ 150 (582)
..+...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66778889999999 8888872 4456677899999999999765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=3.2e-08 Score=95.35 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCcccccCCCCCeEEcCCCcCCCCccccccCCCCcEEEccCCcccccchhhhc--ccccCcEEEccCC--c------cCc
Q 007984 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA--SWTMLTELIASKN--L------LNG 198 (582)
Q Consensus 129 l~~~~~~~~~L~~L~l~~~~~~~i~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~--~------~~~ 198 (582)
+...+..+|+|+.|.++++.-..++. + ..++|++|++..+.+..-....+. .+++|++|++..+ . +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 44455677889999998773223333 3 378888888887776643333333 6778888877421 1 111
Q ss_pred cchhh--cCCCCccEEeCCCCcCcc-CCcCC---cCCCCCcEEEcCCCcCcc-----cchhhhccCCCcEEEcccCcccc
Q 007984 199 MPETI--GSLSRLIRLDLHQNRILS-IPSSI---SGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKE 267 (582)
Q Consensus 199 ~~~~l--~~~~~L~~L~l~~~~~~~-~~~~l---~~~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~~~~ 267 (582)
+...+ ..+++|+.|++.+|.+.. .+..+ ..+++|++|+++.|.+.. ++..+..+++|+.|++++|.++.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11122 235667777776666541 11111 235566666666666553 22233445666666666665553
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=2.3e-07 Score=78.09 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=68.3
Q ss_pred cCChhhhccCCccEEEcCCCcCCcC-CccccCCCCCCEEEcccC-cCCCCChHHhhCC----CCCCEeeCCCCC-CccCC
Q 007984 371 AIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVP 443 (582)
Q Consensus 371 ~i~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l----~~L~~L~l~~~~-l~~~~ 443 (582)
.+|........|++|++++|.+++. -..+..|++|++|++++| .+++.....+..+ ++|++|++++|. +++..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3444333345789999999987762 234678899999999998 5888776667764 579999999985 77655
Q ss_pred CccccCCCCCcEEeCCCCc
Q 007984 444 SDGFKDIPMLQILDLSYNI 462 (582)
Q Consensus 444 ~~~~~~~~~L~~L~l~~n~ 462 (582)
-..+..+++|++|++++|.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 4557788999999998873
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.6e-07 Score=79.06 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=68.6
Q ss_pred CCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCC-CccCCCccccC----CCCCcEEeCCCCc-CCCCCC
Q 007984 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKD----IPMLQILDLSYNI-ASLPEN 468 (582)
Q Consensus 395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~~ 468 (582)
+|.....-..|++||+++|.+++.....+.+|++|++|++++|. +++..-..+.. +++|++|++++|. +++.+
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G- 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG- 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence 45433334579999999999999887888999999999999995 66644334444 3579999999884 44322
Q ss_pred CCCCCCccchhhhhccccccCchhhhccCCCCEEecCCCc-CCc
Q 007984 469 PPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQS 511 (582)
Q Consensus 469 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~ 511 (582)
...+.++++|+.|++++|. ++.
T Consensus 132 ---------------------l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 ---------------------IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ---------------------HHHGGGCTTCCEEEEESCTTCCC
T ss_pred ---------------------HHHHhcCCCCCEEECCCCCCCCc
Confidence 2235567888889998883 553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=3.6e-06 Score=76.63 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCCCCcEEecCCCcCccC---ChhhhccCCccEEEccCCcCCcCCcccccCC--CCCeEEcCCCcCCC-Cc-------cc
Q 007984 89 ELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------ED 155 (582)
Q Consensus 89 ~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~l~~~~~~~-i~-------~~ 155 (582)
.+++|++|+|++|.+..+ +..+..+++|+.|++++|.+..+ ..+..+. +|++|++.+|.+.. ++ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 455555555555555533 23344555555555555555544 1222222 56666666665542 22 12
Q ss_pred cccCCCCcEEE
Q 007984 156 LADCSKMSKLD 166 (582)
Q Consensus 156 l~~~~~L~~L~ 166 (582)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55666666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=1.8e-05 Score=72.07 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=68.3
Q ss_pred EEcCCCCccchhH----hhcCCCCCcEEEcCCCCCcccc---hhhhCCCCCcEEecCCCcCccCChhhhccC--CccEEE
Q 007984 50 LILAHNNIEKLKE----DLRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFD 120 (582)
Q Consensus 50 L~l~~~~i~~~~~----~~~~~~~L~~L~L~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~ 120 (582)
++++.+....++. ....+++|++|+|++|.+..++ ..+..+++|++|+|++|.+..+ ..+..+. +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 5666665554432 2256889999999999888653 5667899999999999998876 3344444 899999
Q ss_pred ccCCcCC-cCC-------cccccCCCCCeEEc
Q 007984 121 CSSNQLK-ELP-------SSLGRCLNLSDFKA 144 (582)
Q Consensus 121 l~~~~~~-~l~-------~~~~~~~~L~~L~l 144 (582)
+++|.+. .+| ..+..+++|+.||-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999886 333 23668899998874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=2.4e-05 Score=67.15 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=57.7
Q ss_pred hhcCCCCCcEEEcCCC-CCc-----ccchhhhCCCCCcEEecCCCcCc-----cCChhhhccCCccEEEccCCcCC----
Q 007984 63 DLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK---- 127 (582)
Q Consensus 63 ~~~~~~~L~~L~L~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~---- 127 (582)
.+..-+.|++|+|+++ .+. .+..++.....|+.|+|++|.+. .+...+...+.|++|++++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455566666666654 554 23345555666666666666665 23344445556666666666655
Q ss_pred -cCCcccccCCCCCeEEcCCC---cCC-----CCccccccCCCCcEEEccCC
Q 007984 128 -ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGN 170 (582)
Q Consensus 128 -~l~~~~~~~~~L~~L~l~~~---~~~-----~i~~~l~~~~~L~~L~l~~~ 170 (582)
.+...+..-+.|++|+++++ .+. .+.+.+...++|++|++..+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 22233444455666666543 222 23344555566666666544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.75 E-value=3.1e-05 Score=66.41 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=80.9
Q ss_pred ccCccEEEcCCC-Ccc-----chhHhhcCCCCCcEEEcCCCCCc-----ccchhhhCCCCCcEEecCCCcCc-----cCC
Q 007984 44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP 107 (582)
Q Consensus 44 ~~~l~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~L~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~-----~l~ 107 (582)
-+.|++|+|+++ .|. .+.+++.....|+.|+|++|.+. .+..++.....|++|+|+.|.|. .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 568999999885 666 34567888889999999999888 34557778889999999999988 344
Q ss_pred hhhhccCCccEEEccCCc---CC-----cCCcccccCCCCCeEEcCCCcCC
Q 007984 108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCIT 150 (582)
Q Consensus 108 ~~~~~~~~L~~L~l~~~~---~~-----~l~~~~~~~~~L~~L~l~~~~~~ 150 (582)
..+...+.|++|+++++. +. .+...+..-++|+.|+++.+.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 556667789999998653 33 23445677789999998876543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=0.00016 Score=57.94 Aligned_cols=71 Identities=34% Similarity=0.522 Sum_probs=56.7
Q ss_pred CEEecCCCcCC--ccchhhcCCCCCCEEeCCCCcCCcCCCcccccccccceeeccCCCCCcchHHHhccchHHHHHHHHh
Q 007984 500 RILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 577 (582)
Q Consensus 500 ~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (582)
..++.+++.++ .+|..+ -++|++|+|++|+|+.++...+...++|+.|+|.+|++.- +.....+..|+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C------dC~l~~l~~wl~~ 82 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC------DCRLVPLRAWLAG 82 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC------SGGGHHHHHHHHT
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec------cCccHHHHHHHHh
Confidence 47889999998 898653 2379999999999999999998888999999999999863 4445555555554
Q ss_pred c
Q 007984 578 K 578 (582)
Q Consensus 578 ~ 578 (582)
.
T Consensus 83 ~ 83 (130)
T 3rfe_A 83 R 83 (130)
T ss_dssp S
T ss_pred C
Confidence 3
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0039 Score=49.79 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=29.9
Q ss_pred EEEcCCCcCC--cCCccccCCCCCCEEEcccCcCCCCChHHhhCCCCCCEeeCCCCCC
Q 007984 384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439 (582)
Q Consensus 384 ~L~l~~~~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 439 (582)
.++.++..++ .+|..+. ++|++|+|++|.++.++...|..+++|+.|+|.+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555555 5554322 3456666666666666555556666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.27 E-value=0.12 Score=38.72 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=20.6
Q ss_pred CCCCChHHhhCCCCCCEeeCCCCCCccCCCccccCCCCCcEEeCCC
Q 007984 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460 (582)
Q Consensus 415 l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 460 (582)
++.+...+|.+|.+|+.+.|.. .++.|...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 3444444444445555444432 24444444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.42 E-value=0.21 Score=37.30 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=34.1
Q ss_pred CCCCccCCCccccCCCCCcEEeCCCCcCCCCCCCCCCCCccchhhhh
Q 007984 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482 (582)
Q Consensus 436 ~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 482 (582)
+..++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 34566777777778888888877764 67777777888888887777
Done!