Query 007985
Match_columns 582
No_of_seqs 158 out of 1478
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 17:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 7E-113 2E-117 950.8 59.2 537 40-577 52-592 (600)
2 PRK12849 groEL chaperonin GroE 100.0 2E-111 4E-116 933.6 61.5 528 43-572 1-529 (542)
3 PRK00013 groEL chaperonin GroE 100.0 3E-111 7E-116 931.9 61.0 537 43-581 1-539 (542)
4 PRK12851 groEL chaperonin GroE 100.0 6E-111 1E-115 930.1 60.2 537 43-581 2-539 (541)
5 PRK12852 groEL chaperonin GroE 100.0 1E-110 2E-115 930.9 60.7 534 43-578 2-537 (545)
6 PRK12850 groEL chaperonin GroE 100.0 1E-110 3E-115 928.4 60.1 535 43-579 2-537 (544)
7 PTZ00114 Heat shock protein 60 100.0 6E-110 1E-114 925.3 60.7 529 41-570 11-544 (555)
8 PRK14104 chaperonin GroEL; Pro 100.0 1E-109 3E-114 919.3 60.0 534 44-579 3-539 (546)
9 TIGR02348 GroEL chaperonin Gro 100.0 7E-109 2E-113 912.1 59.7 521 45-567 2-523 (524)
10 cd03344 GroEL GroEL_like type 100.0 1E-108 2E-113 909.1 59.1 518 45-564 1-519 (520)
11 CHL00093 groEL chaperonin GroE 100.0 1E-108 2E-113 911.7 58.3 524 43-568 1-527 (529)
12 KOG0356 Mitochondrial chaperon 100.0 4E-105 8E-110 837.0 42.6 529 38-570 11-541 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 5E-92 1.1E-96 770.0 35.2 500 43-570 2-518 (524)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.2E-89 2.6E-94 762.0 47.9 462 47-567 3-527 (527)
15 TIGR02347 chap_CCT_zeta T-comp 100.0 2.6E-89 5.6E-94 757.4 49.6 462 44-569 8-529 (531)
16 cd03343 cpn60 cpn60 chaperonin 100.0 4.2E-89 9E-94 757.1 50.4 458 44-565 7-516 (517)
17 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1E-89 2.2E-94 754.4 45.1 452 45-566 5-483 (484)
18 TIGR02339 thermosome_arch ther 100.0 4.2E-89 9.2E-94 756.7 49.7 457 44-564 8-518 (519)
19 TIGR02340 chap_CCT_alpha T-com 100.0 3.7E-89 8E-94 759.0 48.7 465 46-569 6-533 (536)
20 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.5E-88 7.6E-93 750.1 49.6 456 45-564 16-526 (526)
21 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.4E-88 5.2E-93 750.4 48.0 461 47-564 3-514 (515)
22 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.6E-88 1.2E-92 748.2 49.6 461 45-566 9-520 (522)
23 TIGR02344 chap_CCT_gamma T-com 100.0 5.8E-88 1.3E-92 748.6 48.9 461 44-568 8-524 (525)
24 TIGR02345 chap_CCT_eta T-compl 100.0 8.8E-88 1.9E-92 745.8 48.3 460 44-565 10-519 (522)
25 TIGR02342 chap_CCT_delta T-com 100.0 1.6E-87 3.4E-92 743.0 48.0 462 47-565 4-516 (517)
26 TIGR02343 chap_CCT_epsi T-comp 100.0 1.8E-87 3.9E-92 743.9 48.4 456 45-564 20-530 (532)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.8E-87 1E-91 739.1 51.5 458 46-568 7-516 (517)
28 PTZ00212 T-complex protein 1 s 100.0 6.2E-87 1.3E-91 740.3 51.1 462 44-570 14-530 (533)
29 TIGR02346 chap_CCT_theta T-com 100.0 2E-87 4.4E-92 743.4 44.7 466 46-579 11-530 (531)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 5.8E-86 1.3E-90 724.4 46.4 440 44-564 8-479 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 2.7E-85 5.9E-90 724.5 51.6 459 46-569 8-518 (519)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.6E-84 3.4E-89 711.6 46.9 437 50-565 6-471 (472)
33 cd00309 chaperonin_type_I_II c 100.0 2.5E-84 5.5E-89 710.4 48.5 438 46-564 2-464 (464)
34 KOG0361 Chaperonin complex com 100.0 1.9E-85 4.1E-90 658.4 33.9 473 37-570 5-527 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1E-78 2.2E-83 669.8 44.1 440 64-567 1-485 (485)
36 KOG0363 Chaperonin complex com 100.0 8.7E-77 1.9E-81 592.6 33.8 464 44-572 10-525 (527)
37 KOG0358 Chaperonin complex com 100.0 6.4E-76 1.4E-80 588.9 29.8 459 49-565 23-533 (534)
38 KOG0360 Chaperonin complex com 100.0 6.6E-69 1.4E-73 552.0 29.7 466 46-571 13-541 (545)
39 KOG0364 Chaperonin complex com 100.0 2E-69 4.4E-74 550.9 23.0 466 40-569 7-524 (527)
40 KOG0362 Chaperonin complex com 100.0 7.8E-65 1.7E-69 525.3 39.7 450 51-568 25-523 (537)
41 KOG0359 Chaperonin complex com 100.0 5.4E-62 1.2E-66 496.0 24.2 451 51-566 16-515 (520)
42 KOG0357 Chaperonin complex com 100.0 8E-60 1.7E-64 467.6 21.2 374 35-566 9-396 (400)
43 cd03333 chaperonin_like chaper 99.9 9.9E-27 2.1E-31 229.0 20.5 192 182-449 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 1.5E-24 3.3E-29 220.2 20.4 198 194-450 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.1 5.5E-10 1.2E-14 130.4 14.9 207 195-460 334-578 (1598)
46 COG0459 GroL Chaperonin GroEL 96.9 0.0014 3E-08 73.3 6.4 89 273-377 259-354 (524)
47 smart00574 POX domain associat 43.8 74 0.0016 29.3 6.3 61 398-471 68-129 (140)
48 TIGR02345 chap_CCT_eta T-compl 38.6 14 0.00031 41.6 1.1 61 282-343 245-314 (522)
49 PRK13600 putative ribosomal pr 33.7 2.4E+02 0.0052 23.7 7.4 55 275-339 20-74 (84)
50 PF01113 DapB_N: Dihydrodipico 30.2 1.5E+02 0.0031 26.4 6.1 42 261-304 70-111 (124)
51 PF07526 POX: Associated with 27.8 1.6E+02 0.0034 27.2 5.9 60 399-471 69-129 (140)
52 PRK13601 putative L7Ae-like ri 25.4 2E+02 0.0044 23.9 5.6 55 276-340 16-70 (82)
53 PF03102 NeuB: NeuB family; I 23.1 2.3E+02 0.0051 28.6 6.7 80 274-356 103-213 (241)
54 PRK06683 hypothetical protein; 21.5 2.6E+02 0.0056 23.2 5.5 55 276-340 19-73 (82)
55 COG4148 ModC ABC-type molybdat 20.5 1.1E+02 0.0023 32.0 3.6 44 255-298 144-193 (352)
56 PTZ00072 40S ribosomal protein 20.4 1.9E+02 0.0042 26.8 4.8 57 136-192 27-93 (148)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.4e-113 Score=950.81 Aligned_cols=537 Identities=53% Similarity=0.833 Sum_probs=515.3
Q ss_pred ecccchhhhchH--HHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHH
Q 007985 40 VRASAKDIAFDQ--RSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIRE 116 (582)
Q Consensus 40 ~~~~~~~~~~g~--~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e 116 (582)
.+.++|++.||. ++|+.+++||..|+++|++||||+||+|||++ +|+|+|||||+||+|+|+++||++|+||+|+++
T Consensus 52 ~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~ 131 (600)
T PLN03167 52 KVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 131 (600)
T ss_pred hhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHH
Confidence 345689999999 79999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCch
Q 007985 117 VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDD 196 (582)
Q Consensus 117 ~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~ 196 (582)
+|++||+++||||||++||+++||+++.++++.|+||..|++||++|.+.+++.|+++++|+++ ++|.++|++|+++++
T Consensus 132 ~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~ 210 (600)
T PLN03167 132 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNY 210 (600)
T ss_pred HHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999976 679999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHH
Q 007985 197 LIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPL 276 (582)
Q Consensus 197 ~l~~li~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~ 276 (582)
.|++|+++|+.+++++|.|.++.|++++|++++++|++|++||.+|||++++++|+++++||+||++|++|++++++.++
T Consensus 211 ~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~ 290 (600)
T PLN03167 211 EVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGI 290 (600)
T ss_pred HHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHH
Confidence 99999999999999989999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCC
Q 007985 277 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 356 (582)
Q Consensus 277 le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~ 356 (582)
++++.+.|+||||++++|++++|++|+.|+++|.+++++||+|+|++.++++|+|||++||+++++++.|+++++++.++
T Consensus 291 le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~ 370 (600)
T PLN03167 291 LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEV 370 (600)
T ss_pred HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhH
Q 007985 357 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRI 436 (582)
Q Consensus 357 lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l 436 (582)
||+|++|++.+++++++++.++++.++.|+.+|+.+++.+.++|++++|++|+++|+|++++|+|||+|+.+++|+||++
T Consensus 371 LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i 450 (600)
T PLN03167 371 LGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRV 450 (600)
T ss_pred CceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHH
Confidence 99999999999999999998999999999999999999999999999999999999999999899999999999999999
Q ss_pred HhHHHHHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhh-cCC
Q 007985 437 EDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVK-DSE 515 (582)
Q Consensus 437 ~DAl~~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~-~~~ 515 (582)
+||++++++++++|+|||||++|++++.+|++++.+.++.++..+++++++||+.||++||+|||+|+.+++.+|+ +.+
T Consensus 451 ~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~ 530 (600)
T PLN03167 451 EDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDN 530 (600)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999988777788888889999999999999999999999999999997 446
Q ss_pred CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCC
Q 007985 516 WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPP 577 (582)
Q Consensus 516 ~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~ 577 (582)
+++|||+.+|+++||++.|||||+.||+++|++|+++|++||++|++|..+|+++++..+.|
T Consensus 531 ~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~~~~~~ 592 (600)
T PLN03167 531 PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNP 592 (600)
T ss_pred CCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999998876654433333
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-111 Score=933.57 Aligned_cols=528 Identities=58% Similarity=0.898 Sum_probs=511.8
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
|+|.+.||.+++..|++|+..|+++|+|||||+||+|||++ .|+++|||||+||+++|+++||.+|+||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~q 80 (542)
T PRK12849 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT 80 (542)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
|+++||||||+|+|+++||+++.+++++|+||..|++||++|++.+++.|+++++|+++.+++.++|+||++++++++++
T Consensus 81 d~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 160 (542)
T PRK12849 81 NDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGEL 160 (542)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~ 281 (582)
+++|+..++++|.+.++.|++++|++++++|++|++||.+|||.++.++|+++++||+|+++|+.+++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~ 240 (542)
T PRK12849 161 IAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240 (542)
T ss_pred HHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHH
Confidence 99999999988888889999999866999999999999999999988899999999999999999999999999999999
Q ss_pred hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR 361 (582)
Q Consensus 282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~ 361 (582)
+.|+||||++++|+++|+++|..|+++|.+++++||+|+|+++++++|+|||.+||+++++++.+..++++++++||+|+
T Consensus 241 ~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK12849 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985 362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN 441 (582)
Q Consensus 362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~ 441 (582)
+|++++++++++++|++++.+..|++++++++++++++|++++|+||++||+|++|||+|||+|+.+++|++|+++||++
T Consensus 321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~ 400 (542)
T PRK12849 321 RVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALN 400 (542)
T ss_pred EEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEE
Q 007985 442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYN 521 (582)
Q Consensus 442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d 521 (582)
++++++++|+|||||++|++++.+|.+++ +.++. +++++++|++||+.||++||+|||+|+.+++.+|++.++++|||
T Consensus 401 ~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~~~~G~d 478 (542)
T PRK12849 401 ATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGD-QAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELEDGFGFN 478 (542)
T ss_pred HHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhCCCccee
Confidence 99999999999999999999999999988 56555 56999999999999999999999999999999999877889999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCC
Q 007985 522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP 572 (582)
Q Consensus 522 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~ 572 (582)
+.+|+++||++.|||||+.+|.++|++|+++|++||+||++|..+|++..|
T Consensus 479 ~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 479 AATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred CCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 999999999999999999999999999999999999999999999977666
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3e-111 Score=931.90 Aligned_cols=537 Identities=58% Similarity=0.886 Sum_probs=511.1
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
|++.+.||.++|..|++|+..++++|++||||+||+|||++ .|+++|||||+||+|+|+++||++++||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~q 80 (542)
T PRK00013 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 80 (542)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+||+++++.++++
T Consensus 81 d~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~l 160 (542)
T PRK00013 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKL 160 (542)
T ss_pred CcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999889999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~ 281 (582)
+++|+..++++|.|.++.+....|.+++++|++|++||.+|||.+++++|+++++||+||++|+++++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~ 240 (542)
T PRK00013 161 IAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHH
Confidence 99999999988888887655444444999999999999999999998899999999999999999999999999999999
Q ss_pred hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR 361 (582)
Q Consensus 282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~ 361 (582)
+.|+||||++++|+++|+++|+.|+++|++++++||.|+|+++++++|+|||.+||+++++++.|.++++++.++||+|+
T Consensus 241 ~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK00013 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985 362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN 441 (582)
Q Consensus 362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~ 441 (582)
.|+++++++++|++|++++.+..|+++|+.+++++.+.|++++|+||++||+|+++||+|||+|+.+++|++|+++||++
T Consensus 321 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~ 400 (542)
T PRK00013 321 KVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALH 400 (542)
T ss_pred EEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC-CCceeE
Q 007985 442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS-EWTTGY 520 (582)
Q Consensus 442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~-~~~~G~ 520 (582)
++++++++|+|||||++|++++.+|.++ .+.++. +++++++|++||+.||++||+|||+|+.+++.+|++. ++++||
T Consensus 401 ~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~-~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~ 478 (542)
T PRK00013 401 ATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGD-EATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGY 478 (542)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChH-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeE
Confidence 9999999999999999999999999988 545554 5799999999999999999999999999999999874 567999
Q ss_pred EccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCCCC
Q 007985 521 NAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLM 581 (582)
Q Consensus 521 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~~~~~ 581 (582)
|+.+|+++||++.|||||+.||.++|++|+++|++||+||++|..+|++.+..|++.||-|
T Consensus 479 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~ 539 (542)
T PRK00013 479 NAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGM 539 (542)
T ss_pred eCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999977665555555543
No 4
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.2e-111 Score=930.08 Aligned_cols=537 Identities=55% Similarity=0.858 Sum_probs=514.2
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
|.+.+.||.+++..+++|+..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 81 (541)
T PRK12851 2 AAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKT 81 (541)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
|+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++++++++.++++
T Consensus 82 d~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~l 161 (541)
T PRK12851 82 NDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRL 161 (541)
T ss_pred hHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999889999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~ 281 (582)
+++|+..++++|.|.++.+....+++++++|++|++||.+|||++++++|+++++||+||++|+++++.+++.++++++.
T Consensus 162 v~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~ 241 (541)
T PRK12851 162 VAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHH
Confidence 99999999988887776654444555999999999999999999998999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR 361 (582)
Q Consensus 282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~ 361 (582)
+.|+||||++++|+++++++|+.|+++|.++++|||.|+|+++++++|+|||.+|||++++.+.+++++++++++||+|+
T Consensus 242 ~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~ 321 (541)
T PRK12851 242 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAK 321 (541)
T ss_pred HhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985 362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN 441 (582)
Q Consensus 362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~ 441 (582)
.|++.+++|+++++|++++++.+|+++++++++++.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||++
T Consensus 322 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~ 401 (541)
T PRK12851 322 KVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALH 401 (541)
T ss_pred EEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEE
Q 007985 442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYN 521 (582)
Q Consensus 442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d 521 (582)
++++++++|||||||++|++++..|++++.. .+ ++++++++|++||+.||++||+|||+|+.+++.+|++.+.++|||
T Consensus 402 a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~-~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~G~d 479 (541)
T PRK12851 402 ATRAAVEEGIVPGGGVALLRAVKALDKLETA-NG-DQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKPGGYGFN 479 (541)
T ss_pred HHHHHHHcCcccCchHHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCeeee
Confidence 9999999999999999999999999988764 44 467999999999999999999999999999999999877789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCCCC
Q 007985 522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLM 581 (582)
Q Consensus 522 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~~~~~ 581 (582)
+.+|+++||++.|||||+.+|.++|++|+++|++||+||++|..+|++.+.++..|||-|
T Consensus 480 ~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~ 539 (541)
T PRK12851 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGM 539 (541)
T ss_pred CCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999999999999999999999987777778888765
No 5
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.5e-111 Score=930.92 Aligned_cols=534 Identities=54% Similarity=0.843 Sum_probs=511.2
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
++|++.||.++|+.+++|+..|+++|++||||+||+|||++ .|+|+|||||+||+|+|+++||++++||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q 81 (545)
T PRK12852 2 AAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKT 81 (545)
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhc
Confidence 56899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
|+++||||||+|+||++||+++.+++++|+||..|++||++|++.+++.|+++++|+++.+++.++|++++++++.++++
T Consensus 82 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (545)
T PRK12852 82 NDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKM 161 (545)
T ss_pred CceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999889999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~ 281 (582)
+++|+.+++++|.|.++.|++..+.+++++|++|++||.+|||++++++|++.++||+||++|++++++++++++|+++.
T Consensus 162 i~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~ 241 (545)
T PRK12852 162 IAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVV 241 (545)
T ss_pred HHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHH
Confidence 99999999999999999999875545999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR 361 (582)
Q Consensus 282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~ 361 (582)
+.|+||||++++|+++|+++|+.|+++|.++|++||+|+|+++++++|+|||++|||++++.+.|.++++++.++||+|+
T Consensus 242 ~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~ 321 (545)
T PRK12852 242 QSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAK 321 (545)
T ss_pred HhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985 362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN 441 (582)
Q Consensus 362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~ 441 (582)
.|+++++++++++++++++.+.+|+++|+.+++++.+.|++++|+||++||+|++|||+|||+|+.+++|+||+++||+|
T Consensus 322 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~ 401 (545)
T PRK12852 322 KVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALN 401 (545)
T ss_pred EEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc-CCCceeE
Q 007985 442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-SEWTTGY 520 (582)
Q Consensus 442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~-~~~~~G~ 520 (582)
++++++++|+|||||++|++++.+|.+++.. .+ ++++++++|++||+.||++||+|||+|+.+++.+|++ .++++||
T Consensus 402 a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~-~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~ 479 (545)
T PRK12852 402 ATRAAVQEGIVPGGGVALLRAKKAVGRINND-NA-DVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGF 479 (545)
T ss_pred HHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-Cc-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeE
Confidence 9999999999999999999999999998765 44 4679999999999999999999999999999999987 4668999
Q ss_pred EccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCC
Q 007985 521 NAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQ 578 (582)
Q Consensus 521 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~~ 578 (582)
|+.+|+++||++.|||||+.||+++|++|+++|++||+||++|..+|+++..++..|+
T Consensus 480 d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~ 537 (545)
T PRK12852 480 DAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAG 537 (545)
T ss_pred eCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999877544443344
No 6
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-110 Score=928.41 Aligned_cols=535 Identities=53% Similarity=0.826 Sum_probs=512.3
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
|.|.+.||.+++..|++|+..|+++|++||||+||+|||++ .|+++|||||+||+++|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~q 81 (544)
T PRK12850 2 AAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKT 81 (544)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhh
Confidence 56889999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
|+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.++|.++|++|+++++.++++
T Consensus 82 d~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (544)
T PRK12850 82 NDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEM 161 (544)
T ss_pred cchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~ 281 (582)
+++|+.+++++|.|.++.+....+++++++|++|+++|.+|||+++.++|+.+++||+||++|+++++.+++.++++++.
T Consensus 162 v~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~ 241 (544)
T PRK12850 162 IAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVV 241 (544)
T ss_pred HHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHH
Confidence 99999999988888887666666666999999999999999999988899999999999999999999999999999999
Q ss_pred hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR 361 (582)
Q Consensus 282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~ 361 (582)
+.|+||||++++|+++++++|+.|+++|.+++++||+|+|+++++++|+|||++||+++++++.|++++++++++||+|+
T Consensus 242 ~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 321 (544)
T PRK12850 242 QSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAK 321 (544)
T ss_pred HhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985 362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN 441 (582)
Q Consensus 362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~ 441 (582)
+|++.+++|+++++|++++.+..|+++++++++++.++|++++|+||++||+|++|||+|||+|+.+++|++|+++||++
T Consensus 322 ~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~ 401 (544)
T PRK12850 322 RVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALH 401 (544)
T ss_pred EEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEE
Q 007985 442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYN 521 (582)
Q Consensus 442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d 521 (582)
++++++++|||||||++|++++..|+++ .+.++ ++++++++|++||+.||++||+|||+|+.+++.+|++.+.++|||
T Consensus 402 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~-~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~G~d 479 (544)
T PRK12850 402 ATRAAVEEGIVPGGGVALLRARSALRGL-KGANA-DETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELPGNFGFN 479 (544)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCCh-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCccee
Confidence 9999999999999999999999999988 44444 457999999999999999999999999999999999877789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCCCC
Q 007985 522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQG 579 (582)
Q Consensus 522 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~~~ 579 (582)
+.+|+++||++.|||||+.||.++|++|+++|++||++|++|..+|++.++++..||.
T Consensus 480 ~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~ 537 (544)
T PRK12850 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGP 537 (544)
T ss_pred CCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999998776665555553
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=6.4e-110 Score=925.34 Aligned_cols=529 Identities=54% Similarity=0.844 Sum_probs=510.3
Q ss_pred cccchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHh
Q 007985 41 RASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVAS 119 (582)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~ 119 (582)
+.+++++.+|.+++..|++||..|+++|++||||+||+|||++ +|+|+|||||+||+|+|+++||++|+||+|++++|+
T Consensus 11 ~~~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~ 90 (555)
T PTZ00114 11 RFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVAS 90 (555)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHH
Q 007985 120 KTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIG 199 (582)
Q Consensus 120 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~ 199 (582)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+++.++|+|+++++++++
T Consensus 91 ~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~ 170 (555)
T PTZ00114 91 KTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIG 170 (555)
T ss_pred hhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999998899999
Q ss_pred HHHHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHH
Q 007985 200 TMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEK 279 (582)
Q Consensus 200 ~li~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~ 279 (582)
+++++|+.+++++|.|.++.|++++|++++++|++|++||.+|||++++++|+++++||+||++|++|++++++.++|++
T Consensus 171 ~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~ 250 (555)
T PTZ00114 171 SLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEH 250 (555)
T ss_pred HHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccc-cCCcccCCCcCCcc
Q 007985 280 TTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGD-LGLLIENTSVEQLG 358 (582)
Q Consensus 280 i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~-~~~~~~~~~~~~lG 358 (582)
+.+.|+||||++++|+++|+++|..|+++|.+++++||+|++|++++++|+|||++||++++++. .+..++++++++||
T Consensus 251 i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG 330 (555)
T PTZ00114 251 AVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLG 330 (555)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999986 67778999999999
Q ss_pred eeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHh
Q 007985 359 TARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIED 438 (582)
Q Consensus 359 ~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~D 438 (582)
+|++|+++++++++++++++++.|+.|+++++.+++.+.++|++++|++|++||+|++|||+|||+|+.+++|++|+++|
T Consensus 331 ~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~D 410 (555)
T PTZ00114 331 SAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIED 410 (555)
T ss_pred CCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCcchhHHHHHHhhHhhhh--cccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc-CC
Q 007985 439 AKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD--KLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-SE 515 (582)
Q Consensus 439 Al~~~~~al~~gvVpGGGa~e~~l~~~L~~~~~--~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~-~~ 515 (582)
|++++++++++|||||||++|++++..|++++. +.++ ++++++++|++||+.||++||+|||+|+.+++.+|++ .+
T Consensus 411 al~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~-~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~ 489 (555)
T PTZ00114 411 ALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTP-DQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKD 489 (555)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCch-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999998864 3444 4579999999999999999999999999999999987 57
Q ss_pred CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCC
Q 007985 516 WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 570 (582)
Q Consensus 516 ~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~ 570 (582)
+++|||+.+|+++||++.|||||+.||+++|++|+++|++||+||++|..+|++.
T Consensus 490 ~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 490 PSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred CCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCccc
Confidence 7899999999999999999999999999999999999999999999999887664
No 8
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.4e-109 Score=919.34 Aligned_cols=534 Identities=53% Similarity=0.847 Sum_probs=510.6
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
+|.+.||.++|..|++|+..|+++|++||||+||+|||.+ .|+|+|||||+||+|+|++++|++++||+|++++|++||
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd 82 (546)
T PRK14104 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSA 82 (546)
T ss_pred cceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHHH
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMI 202 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li 202 (582)
+++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+++.++|++|+++++.+++++
T Consensus 83 ~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv 162 (546)
T PRK14104 83 DAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFL 162 (546)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887889999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHHh
Q 007985 203 ADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQ 282 (582)
Q Consensus 203 ~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~~ 282 (582)
++|+.+++++|.|.++.+++.+|++++++||+|++||.+|||++++++++.++++|+||++|.+++++++++|+|+++.+
T Consensus 163 ~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~ 242 (546)
T PRK14104 163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQ 242 (546)
T ss_pred HHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHH
Confidence 99999999999999998888876669999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEE
Q 007985 283 LRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARK 362 (582)
Q Consensus 283 ~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~ 362 (582)
.|+||||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++||+++++++.++.+++++.++||+|++
T Consensus 243 ~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~ 322 (546)
T PRK14104 243 TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKK 322 (546)
T ss_pred hCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred EEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHH
Q 007985 363 VTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNA 442 (582)
Q Consensus 363 v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~ 442 (582)
+++++++++++++|++++++.+|+++|+.+++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+++
T Consensus 323 v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a 402 (546)
T PRK14104 323 VMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHA 402 (546)
T ss_pred EEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc-CCCceeEE
Q 007985 443 TFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-SEWTTGYN 521 (582)
Q Consensus 443 ~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~-~~~~~G~d 521 (582)
+++++++|+|||||++|++++..|+++.. . +.++++++++|++||+.||++||+|||+|+.+++.+|+. ..+++|||
T Consensus 403 ~~~ai~~g~VpGGGa~e~~~s~~L~~~~~-~-~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d 480 (546)
T PRK14104 403 TRAAVEEGIVPGGGVALLRASEQLKGIKT-K-NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFD 480 (546)
T ss_pred HHHHHHcCcCcCchHHHHHHHHHHHHhhc-C-ChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEe
Confidence 99999999999999999999999998743 3 445679999999999999999999999999999999986 45679999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCC-CCCC
Q 007985 522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAA-PPQG 579 (582)
Q Consensus 522 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~-~~~~ 579 (582)
+.+|+++||++.|||||+.||+++|++|+++|++||+||++|..+|++....+. .|+|
T Consensus 481 ~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~~~~~~ 539 (546)
T PRK14104 481 SQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGG 539 (546)
T ss_pred CCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999977654444 3543
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7e-109 Score=912.07 Aligned_cols=521 Identities=60% Similarity=0.922 Sum_probs=502.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
+.+.||.+++..|++|+..++++|+|||||+||+|||++ .|+++|||||+||+|+|+++||++|+||+|++++|++||+
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 578999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHHHH
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIA 203 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~ 203 (582)
++||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++.+++.++|++|++++++++++++
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHHhc
Q 007985 204 DAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQL 283 (582)
Q Consensus 204 ~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~~~ 283 (582)
+|+..++++|.|.++.|+..+|.+++++|++|++||.+|||.+++++|++.++||+||++|+++++++++.++++++.+.
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~ 241 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQS 241 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHh
Confidence 99999999888888889888776699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEE
Q 007985 284 RAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV 363 (582)
Q Consensus 284 ~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v 363 (582)
|+||||++++|+++|+++|..|+++|++++++||.|+|+++++++|+|||++||+++++++.|++++++++++||+|+.|
T Consensus 242 g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v 321 (524)
T TIGR02348 242 GKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKV 321 (524)
T ss_pred CcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred EEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHH
Q 007985 364 TIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNAT 443 (582)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~ 443 (582)
++.++++++++++++++.+..|+++++++++++.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||++++
T Consensus 322 ~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~ 401 (524)
T TIGR02348 322 TVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNAT 401 (524)
T ss_pred EEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEEcc
Q 007985 444 FAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAM 523 (582)
Q Consensus 444 ~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d~~ 523 (582)
++++++|||||||++|++++..|.+ ..+.++ ++++++++|++||+.||++||+|||+|+.+++++|++.+.++|||+.
T Consensus 402 r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~-~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~G~d~~ 479 (524)
T TIGR02348 402 RAAVEEGIVPGGGVALLRAAAALEG-LKGDNE-DEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKESKGNFGFNAA 479 (524)
T ss_pred HHHHhcCCccCCcHHHHHHHHHHHH-hccCCh-HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCeeEeCc
Confidence 9999999999999999999999998 555555 45799999999999999999999999999999999876445999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 007985 524 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 567 (582)
Q Consensus 524 ~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p 567 (582)
+|+++||++.|||||+.||.++|++|+++|++||++|++|.+.|
T Consensus 480 ~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 480 TGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred CCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 99999999999999999999999999999999999999998765
No 10
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.1e-108 Score=909.14 Aligned_cols=518 Identities=60% Similarity=0.909 Sum_probs=503.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
+++.||.+++..|++||..|+++|+|||||+||+|||++ +|+|+|||||+||+|+|+++||++++||+|++++|++||+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 457899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHHHH
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIA 203 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~ 203 (582)
++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+|+++++++++++++
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHHhc
Q 007985 204 DAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQL 283 (582)
Q Consensus 204 ~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~~~ 283 (582)
+|+..++++|.|.++.|++++|++++++|++|++||.+|||.++|++|+++++||+|+++|+++++++++.++++++.+.
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~ 240 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99999998888989999999996699999999999999999999989999999999999999999999999999999999
Q ss_pred CCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEE
Q 007985 284 RAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV 363 (582)
Q Consensus 284 ~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v 363 (582)
|+||||++++|+++++++|..|+++|.+++++||+|+++++++++|+|||.+|||++++++++..+++++.++||+|++|
T Consensus 241 ~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v 320 (520)
T cd03344 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKV 320 (520)
T ss_pred CCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred EEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHH
Q 007985 364 TIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNAT 443 (582)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~ 443 (582)
++++++++++++|+++++++.|+++++++++++.++|++++|+||++||+|++|||+|||+|+.+++|++|+++||++++
T Consensus 321 ~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~ 400 (520)
T cd03344 321 VVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNAT 400 (520)
T ss_pred EEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEEcc
Q 007985 444 FAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAM 523 (582)
Q Consensus 444 ~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d~~ 523 (582)
++++++|+|||||++|++++.+|.+++. .++. +++++++|++||+.||++|++|||+|+.+++++|++.+.++|||..
T Consensus 401 k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~-~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~~~G~d~~ 478 (520)
T cd03344 401 RAAVEEGIVPGGGVALLRASPALDKLKA-LNGD-EKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGYDAA 478 (520)
T ss_pred HHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcCCEeEECC
Confidence 9999999999999999999999999886 5554 5799999999999999999999999999999999987779999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhc
Q 007985 524 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 564 (582)
Q Consensus 524 ~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 564 (582)
+|+++||++.|||||+.+|.++|++|+++|++||++|.+|.
T Consensus 479 ~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 479 TGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred CCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999999999999999999999999886
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1e-108 Score=911.74 Aligned_cols=524 Identities=56% Similarity=0.884 Sum_probs=503.1
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
|.|.+.||.++|+.+++||..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||++++|++|++++|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~ 80 (529)
T CHL00093 1 MSKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKT 80 (529)
T ss_pred CCceeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM 201 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 201 (582)
++++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.++|.+||++|+++++.++++
T Consensus 81 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~l 160 (529)
T CHL00093 81 NDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSM 160 (529)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCH-HHHHHHHHHH
Q 007985 202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI-KDIIPLLEKT 280 (582)
Q Consensus 202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~-~~i~~~le~i 280 (582)
+++|+.+++++|.|.++.|+..++.+++++|++|++||.+|||++++++|+++++||+|+++|++|+.. .+++++++++
T Consensus 161 v~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i 240 (529)
T CHL00093 161 IADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQV 240 (529)
T ss_pred HHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHH
Confidence 999999999889888877776666669999999999999999999999999999999999999999987 7899999999
Q ss_pred HhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCccee
Q 007985 281 TQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTA 360 (582)
Q Consensus 281 ~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~ 360 (582)
.+.++||||++++|+++++++|+.|+.+|++++++||.|+++++++++|+|||.+||+++++++.|.+++++++++||+|
T Consensus 241 ~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~ 320 (529)
T CHL00093 241 TKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQA 320 (529)
T ss_pred HhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred EEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHH
Q 007985 361 RKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAK 440 (582)
Q Consensus 361 ~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl 440 (582)
++|+++++++++++ .++++.+..|+++++++++.++++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl 399 (529)
T CHL00093 321 RRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAI 399 (529)
T ss_pred eEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHH
Confidence 99999999999998 56789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCcchhHHHHHHhhHhhhh-cccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCcee
Q 007985 441 NATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTG 519 (582)
Q Consensus 441 ~~~~~al~~gvVpGGGa~e~~l~~~L~~~~~-~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G 519 (582)
+++++++++|+|||||++|++++..|++++. +.++. +++++++|++||+.||++||+|||+|+.+++.+++..+.++|
T Consensus 400 ~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~-~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~~~~G 478 (529)
T CHL00093 400 NATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKED-ELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQDFEIG 478 (529)
T ss_pred HHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHccCCCEe
Confidence 9999999999999999999999999999875 45554 569999999999999999999999999999999988777899
Q ss_pred EEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCC
Q 007985 520 YNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK 568 (582)
Q Consensus 520 ~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~ 568 (582)
||+.+|+++||++.|||||+.||.++|+.|+++|++||++|++|..+|+
T Consensus 479 ~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 479 YNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE 527 (529)
T ss_pred EECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999998874
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-105 Score=837.02 Aligned_cols=529 Identities=52% Similarity=0.804 Sum_probs=517.2
Q ss_pred ceecccchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHH
Q 007985 38 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIRE 116 (582)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e 116 (582)
+.+| .+|++.||.++|..+++|++.|+|+|.+|+||+|||++|.+ +|+|+|||||+|+++++.+.++++|+||+|+++
T Consensus 11 ~~~r-~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~ 89 (550)
T KOG0356|consen 11 KCVR-YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQD 89 (550)
T ss_pred cccc-cccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHH
Confidence 3355 79999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCch
Q 007985 117 VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDD 196 (582)
Q Consensus 117 ~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~ 196 (582)
++.++++.+||||||+++|++++.+++.+-+.+|.+|..+.+|+.++.+.++++|+++++||++.+++.+||++|+++|.
T Consensus 90 va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~ 169 (550)
T KOG0356|consen 90 VANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDK 169 (550)
T ss_pred HHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHH
Q 007985 197 LIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPL 276 (582)
Q Consensus 197 ~l~~li~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~ 276 (582)
++++++.+|++++|++|+|+++.|.+++|++++++||.|++||++|||++++++..++|++|++|+++.+|+++++|.|.
T Consensus 170 ~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~ 249 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPA 249 (550)
T ss_pred HHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccC-CcccCCCcC
Q 007985 277 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLG-LLIENTSVE 355 (582)
Q Consensus 277 le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~-~~~~~~~~~ 355 (582)
||...+...||||++++|++++|.+|+.|++++.++++|||+|+||+.++..+.||+.+||++++.++.+ ++++.++.+
T Consensus 250 LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~ 329 (550)
T KOG0356|consen 250 LELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLE 329 (550)
T ss_pred HHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 889999999
Q ss_pred CcceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhh
Q 007985 356 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLR 435 (582)
Q Consensus 356 ~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~ 435 (582)
+||.++++.++.++++++.+.+++++++.||+|++..++.+.+.|+++++++|+++|+|++++|.|||.|+.|++|++++
T Consensus 330 dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~r 409 (550)
T KOG0356|consen 330 DLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDR 409 (550)
T ss_pred hcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCC
Q 007985 436 IEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSE 515 (582)
Q Consensus 436 l~DAl~~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~ 515 (582)
++||||++++|+++|+|||||+++++|+..|+++.. ..+.+++.|++++.+||..|.++|++|||.|+..++.|++.
T Consensus 410 v~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-- 486 (550)
T KOG0356|consen 410 VEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-- 486 (550)
T ss_pred HHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh--
Confidence 999999999999999999999999999999999876 45667889999999999999999999999999999999994
Q ss_pred CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCC
Q 007985 516 WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 570 (582)
Q Consensus 516 ~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~ 570 (582)
..+|||..+|+|+||++.||+||++|.+++|..|..+|+++++++.+|.+.|+++
T Consensus 487 ~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 487 DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccc
Confidence 4999999999999999999999999999999999999999999999999999987
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-92 Score=769.97 Aligned_cols=500 Identities=45% Similarity=0.661 Sum_probs=453.2
Q ss_pred cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985 43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT 121 (582)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~ 121 (582)
+++++.||.++|..|+.|+..|+++|++||||+||||||++ .|+|.|||||+||+|+|+++||. |+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~~q 77 (524)
T COG0459 2 MGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAKKQ 77 (524)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999 88999999999999999999998 99999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHH-----HHHHHHhhhcCCch
Q 007985 122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRD-----DIKAVATISAGNDD 196 (582)
Q Consensus 122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~-----~l~~va~ts~~~~~ 196 (582)
|+++||||||+|||+++||+++.+++.+|+||+.|++||++|.+.++++|++.++++++.+ ...++++.+.++++
T Consensus 78 d~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~ 157 (524)
T COG0459 78 DDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDE 157 (524)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChH
Confidence 9999999999999999999999999999999999999999999999999999999998655 44555555666679
Q ss_pred hHHHHHHHHHHHhCC-----CCcEEEe-cCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCH
Q 007985 197 LIGTMIADAIDKVGP-----DGVLSIE-SSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI 270 (582)
Q Consensus 197 ~l~~li~~ai~~v~~-----~g~I~i~-~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~ 270 (582)
++++++++|+.+++. ++++.++ .|++..|+ ++++||+|++||.+|||.++ +.++||+||++|++|+..
T Consensus 158 ~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~ 231 (524)
T COG0459 158 EIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIK 231 (524)
T ss_pred HHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEccccccc
Confidence 999999999999998 7776664 55666666 99999999999999998432 788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCccc
Q 007985 271 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 350 (582)
Q Consensus 271 ~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~ 350 (582)
+..++ ++...+.+.+|+++++++.++++..++.|.+++..++++|+.|+|+++++..|+|++++|+.++.+++.+ +
T Consensus 232 k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~---~ 307 (524)
T COG0459 232 KPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG---E 307 (524)
T ss_pred cccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---H
Confidence 99988 8888888889999999999999999999999999999999999999999999999999999999987654 1
Q ss_pred CCCcCCcceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHH
Q 007985 351 NTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAET-DSVYDSEKLAERIAKLSGGVAVIKVGAATETEL 429 (582)
Q Consensus 351 ~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~-~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l 429 (582)
....+|.|+.+...++.+....|.+. +.++++. .++|+++++++|.++ .+++|||+|||+|+.++
T Consensus 308 --~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~l 373 (524)
T COG0459 308 --RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVEL 373 (524)
T ss_pred --HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHH
Confidence 45678889998887777766665420 2334455 689999999999999 99999999999999999
Q ss_pred HHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 007985 430 EDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVV 508 (582)
Q Consensus 430 ~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi 508 (582)
+|+||++||||+++++++++| +|||||++|++++..|++++.+.++.++++|+++|++||+.||++|++|||+|+.+++
T Consensus 374 dE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~ 453 (524)
T COG0459 374 DEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVL 453 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999 9999999999999999988433333357899999999999999999999999999999
Q ss_pred HHhhcCC--CceeEEccCCcc-cccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCC
Q 007985 509 EKVKDSE--WTTGYNAMTDKY-ENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK 570 (582)
Q Consensus 509 ~~l~~~~--~~~G~d~~~g~i-~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~ 570 (582)
.+|++.+ +++|||+.+|++ .||++.|||||+.||+++|++|+|+|.++||+|++|.++|+++
T Consensus 454 ~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 454 SKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 9999975 359999999999 7899999999999999999999999999999999999999865
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-89 Score=762.00 Aligned_cols=462 Identities=23% Similarity=0.306 Sum_probs=417.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccccc
Q 007985 47 IAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSA 125 (582)
Q Consensus 47 ~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~ 125 (582)
...|.+++..|++||..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||+ |+|++++|++||+++
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~ 78 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEV 78 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999 99999999999999999999999 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhh-cccccC--CHHHHHHHHhhhcC-----C-ch
Q 007985 126 GDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRDDIKAVATISAG-----N-DD 196 (582)
Q Consensus 126 GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~--~~~~l~~va~ts~~-----~-~~ 196 (582)
||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|++ +++|++ +.+.|.++|+|+++ . .+
T Consensus 79 GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 79 GDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHH
Confidence 999999999999999999999999999999999999999999999996 899987 78889999999986 2 48
Q ss_pred hHHHHHHHHHHHhC---CCCc---------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEec
Q 007985 197 LIGTMIADAIDKVG---PDGV---------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTD 264 (582)
Q Consensus 197 ~l~~li~~ai~~v~---~~g~---------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 264 (582)
+|++++++|+..++ .+|. |....|++++|+ ++++|++|+++|.+| +|+++++||+|+++|
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~ 230 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLD 230 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEe
Confidence 99999999999985 2232 235689999999 999999999999987 478899999999999
Q ss_pred cCcCC-------------HHH-----------HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCC
Q 007985 265 QKISA-------------IKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPG 320 (582)
Q Consensus 265 ~~i~~-------------~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~ 320 (582)
++++. +.+ +.++++++.+.|++|||++++|++.++++|..++ ++++
T Consensus 231 ~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v---- 300 (527)
T cd03335 231 FNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAV---- 300 (527)
T ss_pred ccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEE----
Confidence 98743 222 3367888889999999999999999999999874 3544
Q ss_pred cchhhhHHHHHHHHHhCCeEeccccCCc-ccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhc
Q 007985 321 FGERRKALLQDIAIVTGAEFQAGDLGLL-IENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAET 396 (582)
Q Consensus 321 ~~~~~~~~l~~ia~~tG~~iis~~~~~~-~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~ 396 (582)
+++++++|+|||++|||+++++..+++ .+++++++||+|++|+ +++++|++|++|+++
T Consensus 301 -~~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~----------------- 362 (527)
T cd03335 301 -RRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKR----------------- 362 (527)
T ss_pred -EeCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 477899999999999999998543332 2345667899999999 678899999988653
Q ss_pred cchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccc
Q 007985 397 DSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLED 475 (582)
Q Consensus 397 ~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~ 475 (582)
++|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++.+..+
T Consensus 363 ------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~ 424 (527)
T cd03335 363 ------------------SSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGS 424 (527)
T ss_pred ------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCc
Confidence 689999999999999999999999999999999999 9999999999999999998776665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC------------CCceeEEccCCcccccccCCccccHHHHH
Q 007985 476 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAMTDKYENMLQAGVIDPAKVTR 543 (582)
Q Consensus 476 ~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~------------~~~~G~d~~~g~i~d~~~~gI~dp~~vk~ 543 (582)
. +++++++|++||+.||++||+|||+|+.+++.+|+.. ++++|||+.+|+++||++.|||||+.+|.
T Consensus 425 ~-~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~ 503 (527)
T cd03335 425 R-EQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKI 503 (527)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHH
Confidence 5 4699999999999999999999999999999999762 35789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhccCC
Q 007985 544 CALQNAASVAGMVLTTQAIVVEKP 567 (582)
Q Consensus 544 ~~l~~A~e~a~~lL~id~iI~~~p 567 (582)
++|+.|+|+|++|||||++|..+|
T Consensus 504 ~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 504 KSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHHHHHHHhhcceeecCC
Confidence 999999999999999999998766
No 15
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-89 Score=757.36 Aligned_cols=462 Identities=22% Similarity=0.312 Sum_probs=418.3
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
..+...|.+++..|+.+|..|+++|+|||||+||+|||++ .|+++|||||+||+++|+++||+ ++|++++|++||
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd 83 (531)
T TIGR02347 8 KAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQD 83 (531)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhh
Confidence 3457788999999999999999999999999999999999 99999999999999999999999 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhccccc---CCHHHHHHHHhhhcCC-----
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPI---EGRDDIKAVATISAGN----- 194 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v---~~~~~l~~va~ts~~~----- 194 (582)
+++||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++++ .+.+.|.++|+|++++
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~ 163 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPID 163 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999999999999999999999999999764 4778899999999864
Q ss_pred -chhHHHHHHHHHHHhCCCCc------EEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEecc
Q 007985 195 -DDLIGTMIADAIDKVGPDGV------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 265 (582)
Q Consensus 195 -~~~l~~li~~ai~~v~~~g~------I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 265 (582)
+++|++++++|+..+++++. |.+ ..|++..|+ ++++|++|+++|.+|+| +++++||+|+++|+
T Consensus 164 ~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~ 235 (531)
T TIGR02347 164 LADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPDM-------PRRVKNAYILTCNV 235 (531)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCCC-------ceeccCceEEEEeC
Confidence 78999999999999987653 343 578899999 99999999999999874 66899999999999
Q ss_pred CcCCH-------------HH-----------HHHHHHHHHhcCC-------C---EEEEecCccHHHHHHHHHhhhcCCc
Q 007985 266 KISAI-------------KD-----------IIPLLEKTTQLRA-------P---LLIIAEDVTGEALATLVVNKLRGIL 311 (582)
Q Consensus 266 ~i~~~-------------~~-----------i~~~le~i~~~~~-------~---lvii~~~i~~~al~~L~~n~~~g~~ 311 (582)
+++.. ++ +...++++.+.+. + ||+++++|++.++++|.+++
T Consensus 236 ~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~----- 310 (531)
T TIGR02347 236 SLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG----- 310 (531)
T ss_pred CCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC-----
Confidence 86432 22 3355677777551 4 89999999999999998865
Q ss_pred eEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEE---EEecceEEEEeCCCChHHHHHHHHH
Q 007985 312 NVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKV---TIRKDSTTIIADAASKDEIQARIAQ 388 (582)
Q Consensus 312 ~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~ri~~ 388 (582)
|++++ ++++++|+|||++|||++++ +++++++++||+|++| ++++++|++|++|+++
T Consensus 311 -I~~i~-----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------- 370 (531)
T TIGR02347 311 -IMALR-----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP--------- 370 (531)
T ss_pred -ceEEc-----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC---------
Confidence 35554 66789999999999999998 6899999999999999 5788899999998764
Q ss_pred HHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhH
Q 007985 389 LKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVP 467 (582)
Q Consensus 389 l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~ 467 (582)
++|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+
T Consensus 371 --------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~ 424 (531)
T TIGR02347 371 --------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLK 424 (531)
T ss_pred --------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999 99999999999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHH
Q 007985 468 AIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTR 543 (582)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~ 543 (582)
+++.+.++. +++++++|++||+.||++|++|||+|+.+++.+|+.. +.++|||+.+|+++||++.|||||+.+|+
T Consensus 425 ~~~~~~~~~-~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~ 503 (531)
T TIGR02347 425 EEKKSVKGK-AKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKK 503 (531)
T ss_pred HHhhcCCCH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHH
Confidence 987766665 5699999999999999999999999999999999763 35799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhccCCCC
Q 007985 544 CALQNAASVAGMVLTTQAIVVEKPKP 569 (582)
Q Consensus 544 ~~l~~A~e~a~~lL~id~iI~~~p~~ 569 (582)
++|++|+++|++|||||++|..+|+.
T Consensus 504 ~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 504 QLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 99999999999999999999988764
No 16
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.2e-89 Score=757.10 Aligned_cols=458 Identities=24% Similarity=0.400 Sum_probs=420.8
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
..+..+|.+++..|++||..|+++|++||||+||+|||++ +|+++|||||+||+|+|+++||. |+|++++|++||
T Consensus 7 ~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 82 (517)
T cd03343 7 GTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 82 (517)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999 99999999999999999999998 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcCCc-----
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAGND----- 195 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~~~----- 195 (582)
+++||||||+|+|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.+.+||+|+++++
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 999999999999999999999999999999999999999999999999999999996 7788999999999865
Q ss_pred -hhHHHHHHHHHHHhCCCCc---------EEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEe
Q 007985 196 -DLIGTMIADAIDKVGPDGV---------LSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVT 263 (582)
Q Consensus 196 -~~l~~li~~ai~~v~~~g~---------I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~ 263 (582)
++|++++++|+.++++++. |.+ +.|++++|| ++++|++|+++|.+|+| ++.++||+|+++
T Consensus 163 ~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl 234 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALL 234 (517)
T ss_pred HHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEE
Confidence 8999999999999976532 655 799999999 99999999999999874 567899999999
Q ss_pred ccC-------------cCCHHHHHHH-----------HHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCC
Q 007985 264 DQK-------------ISAIKDIIPL-----------LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAP 319 (582)
Q Consensus 264 d~~-------------i~~~~~i~~~-----------le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~ 319 (582)
|++ +++++++.++ ++++.+.|++|||++++|+++++++|..++ +++|+
T Consensus 235 ~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~-- 306 (517)
T cd03343 235 DAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR-- 306 (517)
T ss_pred eccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE--
Confidence 998 4777776654 558999999999999999999999998653 24554
Q ss_pred CcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHhhc
Q 007985 320 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAET 396 (582)
Q Consensus 320 ~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~ 396 (582)
++++++|+|||++||+++++ +++++++++||+|++|++. +++|++|++|+++
T Consensus 307 ---~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~----------------- 361 (517)
T cd03343 307 ---RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP----------------- 361 (517)
T ss_pred ---eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC-----------------
Confidence 66899999999999999999 6889998999999999864 8889999988764
Q ss_pred cchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccc
Q 007985 397 DSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLED 475 (582)
Q Consensus 397 ~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~ 475 (582)
..|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+..+
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999999999999 9999999999999999998776655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHH
Q 007985 476 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAAS 551 (582)
Q Consensus 476 ~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e 551 (582)
. +++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|++.||++.|||||+.+|+++|+.|+|
T Consensus 424 ~-~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e 502 (517)
T cd03343 424 R-EQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATE 502 (517)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHH
Confidence 5 569999999999999999999999999999999984 34679999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhcc
Q 007985 552 VAGMVLTTQAIVVE 565 (582)
Q Consensus 552 ~a~~lL~id~iI~~ 565 (582)
+|++||+||++|..
T Consensus 503 ~a~~iL~id~ii~~ 516 (517)
T cd03343 503 AATMILRIDDVIAA 516 (517)
T ss_pred HHHHHHhhhHhhhC
Confidence 99999999999964
No 17
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-89 Score=754.36 Aligned_cols=452 Identities=22% Similarity=0.317 Sum_probs=414.4
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
.+...|.+++..|+.+|..|+++|+|||||+||+|||++ .|+++|||||+||+++|+++||+ ++|+.++|++||+
T Consensus 5 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~ 80 (484)
T cd03342 5 AEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDD 80 (484)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhh
Confidence 356778999999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC---CHHHHHHHHhhhcCCc-----
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE---GRDDIKAVATISAGND----- 195 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~---~~~~l~~va~ts~~~~----- 195 (582)
++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.+.+||++|++++
T Consensus 81 ~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~ 160 (484)
T cd03342 81 ITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADL 160 (484)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhH
Confidence 99999999999999999999999999999999999999999999999999999997 7889999999999864
Q ss_pred -hhHHHHHHHHHHHhCCCC-c-------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccC
Q 007985 196 -DLIGTMIADAIDKVGPDG-V-------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 266 (582)
Q Consensus 196 -~~l~~li~~ai~~v~~~g-~-------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~ 266 (582)
+.|++++++|+..+++++ . |...+|++..|+ ++++|++|+++|.+|+| +++++||+|+++|++
T Consensus 161 ~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~ 232 (484)
T cd03342 161 ADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVS 232 (484)
T ss_pred HHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCC
Confidence 899999999999998765 2 344689999999 99999999999999874 678899999999999
Q ss_pred cCCHHH-HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEecccc
Q 007985 267 ISAIKD-IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDL 345 (582)
Q Consensus 267 i~~~~~-i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~ 345 (582)
++..+. +... ...+|||++++|++.++++|..|+ |+||+ ++++++|+|||++|||++++
T Consensus 233 le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~~l~~ia~~tGa~ii~--- 292 (484)
T cd03342 233 LEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMN--- 292 (484)
T ss_pred CCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHHHHHHHHHHhCCEEec---
Confidence 977654 2211 124699999999999999999885 57776 46788999999999999999
Q ss_pred CCcccCCCcCCcceeEEE---EEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEc
Q 007985 346 GLLIENTSVEQLGTARKV---TIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVG 422 (582)
Q Consensus 346 ~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~ 422 (582)
+++++++++||+|++| ++++++|+++++|+++ +.|||+||
T Consensus 293 --~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lr 335 (484)
T cd03342 293 --SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIK 335 (484)
T ss_pred --ccccCChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEe
Confidence 6899999999999999 4678899999998764 57999999
Q ss_pred CCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007985 423 AATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 501 (582)
Q Consensus 423 G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG 501 (582)
|+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++.+..+. +++++++|++||+.||++|++|||
T Consensus 336 g~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~-~~~~i~~~a~Al~~ip~~La~NaG 414 (484)
T cd03342 336 GPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGK-AKLGVQAFADALLVIPKTLAENSG 414 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999 99999999999999999987766665 569999999999999999999999
Q ss_pred CchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccC
Q 007985 502 VEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 566 (582)
Q Consensus 502 ~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~ 566 (582)
+|+.+++.+|+.. +.++|||+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 415 ~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 415 LDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred CCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999753 5679999999999999999999999999999999999999999999998653
No 18
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.2e-89 Score=756.68 Aligned_cols=457 Identities=26% Similarity=0.416 Sum_probs=419.4
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
..+..+|.+++..|++||..++++|++||||+||+|||++ +|+++|||||+||+|+|+++||. |+|++++|++||
T Consensus 8 ~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd 83 (519)
T TIGR02339 8 GTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 83 (519)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999 99999999999999999999998 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCC--HHHHHHHHhhhcCCc-----
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG--RDDIKAVATISAGND----- 195 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~l~~va~ts~~~~----- 195 (582)
+++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++. .+.|.++|+|+++++
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~ 163 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEV 163 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccch
Confidence 9999999999999999999999999999999999999999999999999999999863 678999999999754
Q ss_pred --hhHHHHHHHHHHHhCC---CCc---------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEE
Q 007985 196 --DLIGTMIADAIDKVGP---DGV---------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 261 (582)
Q Consensus 196 --~~l~~li~~ai~~v~~---~g~---------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 261 (582)
++|++++++|+.++++ +|. |....|++++|| ++++|++|+++|.+| +|+.+++||+|+
T Consensus 164 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIl 235 (519)
T TIGR02339 164 TKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIA 235 (519)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEE
Confidence 7899999999999974 553 334799999999 999999999999987 377889999999
Q ss_pred EeccC-------------cCCHHHHHHHHH-----------HHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEee
Q 007985 262 VTDQK-------------ISAIKDIIPLLE-----------KTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIK 317 (582)
Q Consensus 262 l~d~~-------------i~~~~~i~~~le-----------~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk 317 (582)
++|++ +++++++.++++ ++.+.|++|||++++|++.++++|..++ +.+|
T Consensus 236 ll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v- 308 (519)
T TIGR02339 236 LLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAV- 308 (519)
T ss_pred EEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEE-
Confidence 99998 677777776665 8999999999999999999999997654 2444
Q ss_pred CCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHh
Q 007985 318 APGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELA 394 (582)
Q Consensus 318 ~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~ 394 (582)
+++++++|+|||++||+++++ ++++++++.||+|++|++. +++|++|++|+++
T Consensus 309 ----~~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 364 (519)
T TIGR02339 309 ----RRVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--------------- 364 (519)
T ss_pred ----ecCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 467899999999999999999 6888888899999999865 4889999988654
Q ss_pred hccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcc
Q 007985 395 ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKL 473 (582)
Q Consensus 395 ~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~ 473 (582)
..|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++.+.
T Consensus 365 --------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~ 424 (519)
T TIGR02339 365 --------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKI 424 (519)
T ss_pred --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcC
Confidence 478999999999999999999999999999999999 99999999999999999987766
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 007985 474 EDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNA 549 (582)
Q Consensus 474 ~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A 549 (582)
.+. +++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|++.||++.|||||+.+|+++|+.|
T Consensus 425 ~~~-~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 503 (519)
T TIGR02339 425 GGR-EQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSA 503 (519)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHH
Confidence 665 469999999999999999999999999999999974 356799999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhc
Q 007985 550 ASVAGMVLTTQAIVV 564 (582)
Q Consensus 550 ~e~a~~lL~id~iI~ 564 (582)
+|+|++||++|++|.
T Consensus 504 ~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 504 TEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHhHhHHhh
Confidence 999999999999984
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-89 Score=759.04 Aligned_cols=465 Identities=22% Similarity=0.302 Sum_probs=419.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccc
Q 007985 46 DIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDS 124 (582)
Q Consensus 46 ~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~ 124 (582)
+...|.+++..|++||..|+++|++||||+||+|||++ +|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~ 81 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDRE 81 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhc-ccccC--CHHHHHHHHhhhcC------Cc
Q 007985 125 AGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKR-ARPIE--GRDDIKAVATISAG------ND 195 (582)
Q Consensus 125 ~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~-s~~v~--~~~~l~~va~ts~~------~~ 195 (582)
+||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++ ++|++ +.+++.++|+|+++ ++
T Consensus 82 ~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 82 VGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhH
Confidence 99999999999999999999999999999999999999999999999975 88987 77889999999987 57
Q ss_pred hhHHHHHHHHHHHhC---CCCc-------E--EEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEe
Q 007985 196 DLIGTMIADAIDKVG---PDGV-------L--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVT 263 (582)
Q Consensus 196 ~~l~~li~~ai~~v~---~~g~-------I--~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~ 263 (582)
++|++++++|+..++ .+|. | ..+.|+++.|+ ++++|++|+++|.+| +|+++++||+|+++
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~ 233 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACL 233 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEE
Confidence 899999999999986 2342 2 33799999888 999999999999886 47889999999999
Q ss_pred ccCcCCHH------------------------HHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCC
Q 007985 264 DQKISAIK------------------------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAP 319 (582)
Q Consensus 264 d~~i~~~~------------------------~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~ 319 (582)
|++++..+ .+.+.++.+.+.|++||+++++|++.++++|.++++ +++
T Consensus 234 ~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I------~~i--- 304 (536)
T TIGR02340 234 DFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGA------MGV--- 304 (536)
T ss_pred ecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCc------EEE---
Confidence 99874332 133667788899999999999999999999998753 544
Q ss_pred CcchhhhHHHHHHHHHhCCeEeccccCC-cccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 007985 320 GFGERRKALLQDIAIVTGAEFQAGDLGL-LIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAE 395 (582)
Q Consensus 320 ~~~~~~~~~l~~ia~~tG~~iis~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 395 (582)
+++++++|+|||++|||+++++..++ ..+++++++||+|++|+ +++++|++|++|+++
T Consensus 305 --~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 366 (536)
T TIGR02340 305 --RRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR---------------- 366 (536)
T ss_pred --ecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC----------------
Confidence 46789999999999999999865444 23456677899999999 788999999988654
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhccc
Q 007985 396 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLE 474 (582)
Q Consensus 396 ~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~ 474 (582)
.+|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+..
T Consensus 367 -------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~ 427 (536)
T TIGR02340 367 -------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLG 427 (536)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCC
Confidence 479999999999999999999999999999999999 999999999999999998876655
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC------------CCceeEEccCCcccccccCCccccHHHH
Q 007985 475 DADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAMTDKYENMLQAGVIDPAKVT 542 (582)
Q Consensus 475 ~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~------------~~~~G~d~~~g~i~d~~~~gI~dp~~vk 542 (582)
+. +++++++|++||+.||++||+|||+|+.+++.+|+.. +.++|||+.+|+++||++.|||||+.+|
T Consensus 428 ~~-~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k 506 (536)
T TIGR02340 428 SR-EQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSK 506 (536)
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHH
Confidence 54 5699999999999999999999999999999999762 3479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhccCCCC
Q 007985 543 RCALQNAASVAGMVLTTQAIVVEKPKP 569 (582)
Q Consensus 543 ~~~l~~A~e~a~~lL~id~iI~~~p~~ 569 (582)
.++|+.|+|+|++||+||++|..+|++
T Consensus 507 ~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 507 VKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 999999999999999999999988754
No 20
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.5e-88 Score=750.06 Aligned_cols=456 Identities=24% Similarity=0.327 Sum_probs=414.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
.++.+|.+++..|++||..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||+ |+|++++|++||+
T Consensus 16 ~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 91 (526)
T cd03339 16 KKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQDD 91 (526)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhhh
Confidence 468999999999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC----CHHHHHHHHhhhcCC-----
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GRDDIKAVATISAGN----- 194 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~ts~~~----- 194 (582)
++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.|.++|+|+++.
T Consensus 92 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~ 171 (526)
T cd03339 92 EIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSR 171 (526)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999985 577899999999874
Q ss_pred -chhHHHHHHHHHHHhCCC-------Cc--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEec
Q 007985 195 -DDLIGTMIADAIDKVGPD-------GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTD 264 (582)
Q Consensus 195 -~~~l~~li~~ai~~v~~~-------g~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 264 (582)
.+.|++++++|+..+... .. |....|++++|| ++++|++|+++|.+|+| ++.++||||++++
T Consensus 172 ~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~ 243 (526)
T cd03339 172 CHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAILT 243 (526)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEEE
Confidence 378999999999887431 12 344799999999 99999999999999875 5577899999988
Q ss_pred cC-------------cCCHHH-----------HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCC
Q 007985 265 QK-------------ISAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPG 320 (582)
Q Consensus 265 ~~-------------i~~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~ 320 (582)
++ ++++++ +.++++++.+.|++|||++++|++.++++|..|++ .+|+.
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I------~av~~-- 315 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGL------PAVRW-- 315 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC------EEEEe--
Confidence 75 345554 66789999999999999999999999999998764 56654
Q ss_pred cchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---e--cceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 007985 321 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---R--KDSTTIIADAASKDEIQARIAQLKKELAE 395 (582)
Q Consensus 321 ~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~--~~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 395 (582)
+++.+|+|||++|||++++ ++++++++.||+|+.|+. + +++++++++|+++
T Consensus 316 ---v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~---------------- 371 (526)
T cd03339 316 ---VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS---------------- 371 (526)
T ss_pred ---CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC----------------
Confidence 4678899999999999999 689999999999999983 3 4678999988764
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhccc
Q 007985 396 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLE 474 (582)
Q Consensus 396 ~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~ 474 (582)
+.|||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++.+..
T Consensus 372 -------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 432 (526)
T cd03339 372 -------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCS 432 (526)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCC
Confidence 579999999999999999999999999999999998 999999999999999999877666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc-----CCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 007985 475 DADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNA 549 (582)
Q Consensus 475 ~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~-----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A 549 (582)
+. +++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.||+++|+.|
T Consensus 433 ~~-~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A 511 (526)
T cd03339 433 GI-EQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLA 511 (526)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHH
Confidence 65 479999999999999999999999999999999973 255799999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhc
Q 007985 550 ASVAGMVLTTQAIVV 564 (582)
Q Consensus 550 ~e~a~~lL~id~iI~ 564 (582)
+|+|++||+||++|.
T Consensus 512 ~e~a~~iL~iD~ii~ 526 (526)
T cd03339 512 TQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHhhhceecC
Confidence 999999999999873
No 21
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-88 Score=750.38 Aligned_cols=461 Identities=22% Similarity=0.321 Sum_probs=414.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccccc
Q 007985 47 IAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSA 125 (582)
Q Consensus 47 ~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~ 125 (582)
...+.+++..|+.+|..++++|++||||+||+|||++ +|+++|||||+||+|+|+++||+ ++|++++|++||+++
T Consensus 3 ~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~ 78 (515)
T cd03338 3 KEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEA 78 (515)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHh
Confidence 4556788999999999999999999999999999999 99999999999999999999999 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcC------Cchh
Q 007985 126 GDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAG------NDDL 197 (582)
Q Consensus 126 GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~------~~~~ 197 (582)
||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.|.++|+|+++ ++++
T Consensus 79 GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ 158 (515)
T cd03338 79 GDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSL 158 (515)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999999999986 77889999999998 4688
Q ss_pred HHHHHHHHHHHhCCCCc----------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCc
Q 007985 198 IGTMIADAIDKVGPDGV----------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKI 267 (582)
Q Consensus 198 l~~li~~ai~~v~~~g~----------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 267 (582)
+++++++|+.++++++. |.++.|++++|| ++++|++|+++|.+|++ |++.++||+|+++++++
T Consensus 159 ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~l 231 (515)
T cd03338 159 LAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCL 231 (515)
T ss_pred HHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccc
Confidence 99999999999987653 666799999999 99999999999999752 35678899999987764
Q ss_pred -------------CCH-----------HHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcch
Q 007985 268 -------------SAI-----------KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGE 323 (582)
Q Consensus 268 -------------~~~-----------~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~ 323 (582)
+++ +++.++++++.+.|++|||++++|++++++.++.|.+++ .+|++|+ +
T Consensus 232 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~ 305 (515)
T cd03338 232 SPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----D 305 (515)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----c
Confidence 222 345678999999999999999999544444444444432 4567775 6
Q ss_pred hhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchh
Q 007985 324 RRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVY 400 (582)
Q Consensus 324 ~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~ 400 (582)
+++++|+|||++|||++++ ++++++.+.||+|+.|++ +++.++++.+|.+
T Consensus 306 ~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~---------------------- 358 (515)
T cd03338 306 IEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN---------------------- 358 (515)
T ss_pred CCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC----------------------
Confidence 7899999999999999999 688899899999999986 3567888888754
Q ss_pred hHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHH
Q 007985 401 DSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADER 479 (582)
Q Consensus 401 ~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~ 479 (582)
++++|||+|||+|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++.+..+. ++
T Consensus 359 ------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~-~~ 425 (515)
T cd03338 359 ------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGV-EQ 425 (515)
T ss_pred ------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcH-HH
Confidence 13689999999999999999999999999999999999 99999999999999999987666555 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q 007985 480 LGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGM 555 (582)
Q Consensus 480 ~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 555 (582)
+++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.+|+++|+.|+++|++
T Consensus 426 ~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~ 505 (515)
T cd03338 426 YCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRM 505 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977 366899999999999999999999999999999999999999
Q ss_pred Hhchhhhhc
Q 007985 556 VLTTQAIVV 564 (582)
Q Consensus 556 lL~id~iI~ 564 (582)
||+||++|.
T Consensus 506 iL~ID~ii~ 514 (515)
T cd03338 506 ILKIDDIVL 514 (515)
T ss_pred Hhccchhhc
Confidence 999999985
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-88 Score=748.18 Aligned_cols=461 Identities=21% Similarity=0.324 Sum_probs=420.9
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
.+...|.+++..|+.+|..|+++|++||||+||+|||++ .|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 84 (522)
T cd03340 9 TDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDA 84 (522)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHh
Confidence 346678889999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCC------HHHHHHHHhhhcC----
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG------RDDIKAVATISAG---- 193 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~------~~~l~~va~ts~~---- 193 (582)
++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ .+.+.++|+|+++
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~ 164 (522)
T cd03340 85 EVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLI 164 (522)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999999999999999999999999864 5669999999976
Q ss_pred --CchhHHHHHHHHHHHhCCCC---c--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccC
Q 007985 194 --NDDLIGTMIADAIDKVGPDG---V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 266 (582)
Q Consensus 194 --~~~~l~~li~~ai~~v~~~g---~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~ 266 (582)
++++|++++++|+.++++++ . |....|++++|| ++++|++|+++|.+|+|. +|+++++||+|+++|++
T Consensus 165 ~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~ 239 (522)
T cd03340 165 ASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVE 239 (522)
T ss_pred hhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCC
Confidence 47899999999999998765 3 344689999999 899999999999999874 35677999999999998
Q ss_pred c-------------CCHHH-----------HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcc
Q 007985 267 I-------------SAIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFG 322 (582)
Q Consensus 267 i-------------~~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~ 322 (582)
+ +++.+ +.+.++.+.+.|+++|+++++|++.++++|..+++ +++ +
T Consensus 240 Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I------~~~-----~ 308 (522)
T cd03340 240 LELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDI------FCA-----G 308 (522)
T ss_pred CCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCc------EEE-----E
Confidence 4 44443 45678888999999999999999999999998753 444 4
Q ss_pred hhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhccch
Q 007985 323 ERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAETDSV 399 (582)
Q Consensus 323 ~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~ 399 (582)
++++++|++||++|||++++ +++++++++||+|+.|+ ++++++++|.+|..+
T Consensus 309 ~v~~~~l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------- 363 (522)
T cd03340 309 RVPEEDLKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------- 363 (522)
T ss_pred eCCHHHHHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------
Confidence 66889999999999999999 68899999999999998 578899999998653
Q ss_pred hhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhH
Q 007985 400 YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADE 478 (582)
Q Consensus 400 ~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~ 478 (582)
..+||++||+|+..++|.+|+++||++++++++++| +|||||++|++++.+|++++.+..+. +
T Consensus 364 ---------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~-~ 427 (522)
T cd03340 364 ---------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGK-Q 427 (522)
T ss_pred ---------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCH-H
Confidence 479999999999999999999999999999999998 99999999999999999987766555 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----C-CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHH
Q 007985 479 RLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----E-WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVA 553 (582)
Q Consensus 479 ~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~-~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 553 (582)
++++++|++||+.||++|++|||+|+.+++.+|+.. + .++|||+.+|+++||++.|||||+.||+++|+.|+|+|
T Consensus 428 ~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a 507 (522)
T cd03340 428 QLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAA 507 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999873 3 57999999999999999999999999999999999999
Q ss_pred HHHhchhhhhccC
Q 007985 554 GMVLTTQAIVVEK 566 (582)
Q Consensus 554 ~~lL~id~iI~~~ 566 (582)
++||+||++|..+
T Consensus 508 ~~iL~id~ii~~~ 520 (522)
T cd03340 508 CLILSVDETIKNP 520 (522)
T ss_pred HHHhhhhhheeCC
Confidence 9999999999764
No 23
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.8e-88 Score=748.55 Aligned_cols=461 Identities=23% Similarity=0.306 Sum_probs=418.9
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
..+...|.+++..|+.+|..|+++|+|||||+||+|||++ .|+++|||||+||+++|+++||+ |+|++++|++||
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~ 83 (525)
T TIGR02344 8 NTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQD 83 (525)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhh
Confidence 3457788999999999999999999999999999999999 99999999999999999999999 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcCC------
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAGN------ 194 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~~------ 194 (582)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.+.++|+|+++.
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 163 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRW 163 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhH
Confidence 999999999999999999999999999999999999999999999999999999986 567799999988654
Q ss_pred chhHHHHHHHHHHHhCCCC-----------cEEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEE
Q 007985 195 DDLIGTMIADAIDKVGPDG-----------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 261 (582)
Q Consensus 195 ~~~l~~li~~ai~~v~~~g-----------~I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 261 (582)
++.|++++++|+..+++++ .|++ .+|++++|| ++++|++|++++.++ +|+.+++||+|+
T Consensus 164 ~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIl 235 (525)
T TIGR02344 164 SDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIV 235 (525)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEE
Confidence 5899999999999998653 1333 579999998 999999999987764 478899999999
Q ss_pred EeccCcCC-------------HHHHHHH-----------HHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEee
Q 007985 262 VTDQKISA-------------IKDIIPL-----------LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIK 317 (582)
Q Consensus 262 l~d~~i~~-------------~~~i~~~-----------le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk 317 (582)
+++++++. ++++.++ ++++.+.|++||++++.|++.++++|..++ |+++
T Consensus 236 ll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av- 308 (525)
T TIGR02344 236 LLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAI- 308 (525)
T ss_pred EEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEE-
Confidence 99998744 4565554 448888999999999999999999998754 4554
Q ss_pred CCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcce-eEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHH
Q 007985 318 APGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARIAQLKKEL 393 (582)
Q Consensus 318 ~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l 393 (582)
+++++++|+|||++|||++++ ++++++++++|+ |+.|++ +++++++|++|+++
T Consensus 309 ----~~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~-------------- 365 (525)
T TIGR02344 309 ----RRVRKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP-------------- 365 (525)
T ss_pred ----ecCCHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC--------------
Confidence 578999999999999999999 688899999999 998886 56889999998664
Q ss_pred hhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhc
Q 007985 394 AETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDK 472 (582)
Q Consensus 394 ~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~ 472 (582)
.+|||+|||+|+.+++|.||+++||+++++++++++ +|||||++|++++.+|++++.+
T Consensus 366 ---------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~ 424 (525)
T TIGR02344 366 ---------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASK 424 (525)
T ss_pred ---------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999996 9999999999999999998776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC-----CCceeEEccCCcccccccCCccccHHHHHHHHH
Q 007985 473 LEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQ 547 (582)
Q Consensus 473 ~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~ 547 (582)
..+.+ ++++++|++||+.||++||+|||+|+.+++.+|+.. +.++|+|+.+|+++||++.|||||+.+|+++|+
T Consensus 425 ~~~~~-~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~ 503 (525)
T TIGR02344 425 LEGVQ-QWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYK 503 (525)
T ss_pred CCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHH
Confidence 66654 699999999999999999999999999999999762 457999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhccCCC
Q 007985 548 NAASVAGMVLTTQAIVVEKPK 568 (582)
Q Consensus 548 ~A~e~a~~lL~id~iI~~~p~ 568 (582)
.|+|+|++||+||++|..+|+
T Consensus 504 ~A~e~a~~iL~id~ii~~~~~ 524 (525)
T TIGR02344 504 TAIESACMLLRIDDIVSGVKK 524 (525)
T ss_pred HHHHHHHHHHhhhHHhhcCCC
Confidence 999999999999999988874
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-88 Score=745.82 Aligned_cols=460 Identities=20% Similarity=0.299 Sum_probs=418.0
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
+.+...|.+++..|+.+|..|+++|++||||+||+|||++ +| ++|||||+||+|+|+++||+ |+|++++|++||
T Consensus 10 ~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~ 84 (522)
T TIGR02345 10 GTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQD 84 (522)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHH
Confidence 4458889999999999999999999999999999999999 99 99999999999999999999 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC-----CHHHHHHHHhhhcC----
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----GRDDIKAVATISAG---- 193 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~~~l~~va~ts~~---- 193 (582)
+++||||||+|||+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.+.++|+|+++
T Consensus 85 ~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~ 164 (522)
T TIGR02345 85 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLI 164 (522)
T ss_pred HHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999997 45789999999976
Q ss_pred --CchhHHHHHHHHHHHhCCCC------cEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEecc
Q 007985 194 --NDDLIGTMIADAIDKVGPDG------VLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 265 (582)
Q Consensus 194 --~~~~l~~li~~ai~~v~~~g------~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 265 (582)
++++|++++++|+.++++++ .|....|++++|| ++++|++|+++|.+|||.+ |+.+++||+|+++|+
T Consensus 165 ~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 165 AHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNV 239 (522)
T ss_pred cchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEec
Confidence 57899999999999998652 2444589999999 7899999999999999844 667899999999999
Q ss_pred CcC-------------CHHH-----------HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCc
Q 007985 266 KIS-------------AIKD-----------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGF 321 (582)
Q Consensus 266 ~i~-------------~~~~-----------i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~ 321 (582)
+++ ++++ +...++++.+.|+++|+++++|++.++++|..+++ +++
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I------~~~----- 308 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNI------FCA----- 308 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCc------EEE-----
Confidence 863 3333 23556778888999999999999999999988653 444
Q ss_pred chhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccc
Q 007985 322 GERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDS 398 (582)
Q Consensus 322 ~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 398 (582)
+++...++++|+++||+++++ +++++++++||+|+.|+. +++++++|.+|+++
T Consensus 309 ~~v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~------------------- 364 (522)
T TIGR02345 309 GRVSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA------------------- 364 (522)
T ss_pred ecCCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC-------------------
Confidence 567889999999999999999 688999899999999984 46789999988553
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchh
Q 007985 399 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDAD 477 (582)
Q Consensus 399 ~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~ 477 (582)
.+|||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|++++.+..+.
T Consensus 365 ----------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~- 427 (522)
T TIGR02345 365 ----------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGK- 427 (522)
T ss_pred ----------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCH-
Confidence 479999999999999999999999999999999984 99999999999999999887766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHH
Q 007985 478 ERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVA 553 (582)
Q Consensus 478 ~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 553 (582)
+++++++|++||+.||++||+|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.||+++|++|+|+|
T Consensus 428 ~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a 507 (522)
T TIGR02345 428 QQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAA 507 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999976 3557999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcc
Q 007985 554 GMVLTTQAIVVE 565 (582)
Q Consensus 554 ~~lL~id~iI~~ 565 (582)
++||++|++|..
T Consensus 508 ~~iL~id~ii~~ 519 (522)
T TIGR02345 508 CTILSIDETIMN 519 (522)
T ss_pred HHHHhHHHHHhC
Confidence 999999999966
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-87 Score=743.02 Aligned_cols=462 Identities=21% Similarity=0.328 Sum_probs=410.6
Q ss_pred hhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccccc
Q 007985 47 IAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSA 125 (582)
Q Consensus 47 ~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~ 125 (582)
...+.+++..|+.+|..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||+ ++|++++|++||+++
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~ 79 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEA 79 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHh
Confidence 3566778899999999999999999999999999999 99999999999999999999999 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcCC------chh
Q 007985 126 GDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAGN------DDL 197 (582)
Q Consensus 126 GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~~------~~~ 197 (582)
||||||+|+|+++||+++.+++++|+||+.|++||++|.+.+++.|+++++|++ +.+.+.++|+|+++. .++
T Consensus 80 GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 80 GDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999987 788899999999863 367
Q ss_pred HHHHHHHHHHHhCC---CCc-----EE--EecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCc
Q 007985 198 IGTMIADAIDKVGP---DGV-----LS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKI 267 (582)
Q Consensus 198 l~~li~~ai~~v~~---~g~-----I~--i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 267 (582)
|++++++|+..+++ ++. |+ ...|++..|+ ++++|++|+++|.++ .+|++.++||+|+++++++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~L 232 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQI 232 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCC
Confidence 79999999999975 232 33 3589999999 999999999999874 2477788999999998875
Q ss_pred C-------------CH-----------HHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcch
Q 007985 268 S-------------AI-----------KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGE 323 (582)
Q Consensus 268 ~-------------~~-----------~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~ 323 (582)
+ ++ +++.++++++.+.|+||||++++|++++++.++.|.+.+ .+|+||+ +
T Consensus 233 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~-----~ 306 (517)
T TIGR02342 233 SPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK-----D 306 (517)
T ss_pred CCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----c
Confidence 2 22 235678999999999999999999544444444444433 4567775 6
Q ss_pred hhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE-E--ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchh
Q 007985 324 RRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT-I--RKDSTTIIADAASKDEIQARIAQLKKELAETDSVY 400 (582)
Q Consensus 324 ~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~-i--~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~ 400 (582)
+++++|+|||++|||++++ +++++++++||+|+.|+ + +++.++++.+|.+
T Consensus 307 v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~---------------------- 359 (517)
T TIGR02342 307 IEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN---------------------- 359 (517)
T ss_pred CCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 7899999999999999999 68889999999999998 3 4556777887754
Q ss_pred hHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHH
Q 007985 401 DSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADER 479 (582)
Q Consensus 401 ~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~ 479 (582)
++++|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|++++.+|++++.+..+. ++
T Consensus 360 ------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~-~~ 426 (517)
T TIGR02342 360 ------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGV-ES 426 (517)
T ss_pred ------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcH-HH
Confidence 24689999999999999999999999999999999985 99999999999999999987766665 46
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q 007985 480 LGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGM 555 (582)
Q Consensus 480 ~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 555 (582)
+++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.+|+++|++|+++|++
T Consensus 427 ~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~ 506 (517)
T TIGR02342 427 YCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRM 506 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977 356899999999999999999999999999999999999999
Q ss_pred Hhchhhhhcc
Q 007985 556 VLTTQAIVVE 565 (582)
Q Consensus 556 lL~id~iI~~ 565 (582)
||++|++|..
T Consensus 507 iL~iD~ii~~ 516 (517)
T TIGR02342 507 ILKIDDIVFT 516 (517)
T ss_pred Hhcccceeec
Confidence 9999999864
No 26
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-87 Score=743.90 Aligned_cols=456 Identities=24% Similarity=0.334 Sum_probs=413.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 45 KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 45 ~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
.+...|.+++..|++||..|+++|++||||+||+|||++ .|+++|||||+||+|+|+++||+ |+|++++|++||+
T Consensus 20 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~ 95 (532)
T TIGR02343 20 KKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDD 95 (532)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC----CHHHHHHHHhhhcCC-----
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE----GRDDIKAVATISAGN----- 194 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~----~~~~l~~va~ts~~~----- 194 (582)
++||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ +.+.|.++|+|+++.
T Consensus 96 ~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~ 175 (532)
T TIGR02343 96 EIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSK 175 (532)
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhH
Confidence 99999999999999999999999999999999999999999999999999999875 367899999999864
Q ss_pred -chhHHHHHHHHHHHhCC-C-C-----c--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEec
Q 007985 195 -DDLIGTMIADAIDKVGP-D-G-----V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTD 264 (582)
Q Consensus 195 -~~~l~~li~~ai~~v~~-~-g-----~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 264 (582)
.+.|++++++|+..+.. + + . |....|++++|| ++++|++|+++|.+|+| ++.++||+|++++
T Consensus 176 ~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~ 247 (532)
T TIGR02343 176 CHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQM-------PKEVKDAKIAILT 247 (532)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCCC-------CeeecCCcEEEEE
Confidence 46799999999998843 1 1 2 444699999999 99999999999999874 5677899999988
Q ss_pred cC-------------cCCHHHH-----------HHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCC
Q 007985 265 QK-------------ISAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPG 320 (582)
Q Consensus 265 ~~-------------i~~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~ 320 (582)
++ +++++++ .++++++.+.|++|||++++|++.++++|..|++ .+|+
T Consensus 248 ~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i------~~v~--- 318 (532)
T TIGR02343 248 CPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDL------PAVR--- 318 (532)
T ss_pred eeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCc------EEEE---
Confidence 65 3556555 6789999999999999999999999999999864 4555
Q ss_pred cchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---ec--ceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 007985 321 FGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RK--DSTTIIADAASKDEIQARIAQLKKELAE 395 (582)
Q Consensus 321 ~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~~--~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 395 (582)
++++.+|+|||++|||++++ +++++++++||+|++|+. +. ++++++++|+++
T Consensus 319 --~~~~~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------- 375 (532)
T TIGR02343 319 --WVGGHELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------- 375 (532)
T ss_pred --cCCHHHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------
Confidence 55678899999999999999 689999999999999983 33 478999988764
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhccc
Q 007985 396 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLE 474 (582)
Q Consensus 396 ~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~ 474 (582)
.+|||+|||+|+.+++|.||+++||+++++++++++ +|||||++|++++++|++++.+..
T Consensus 376 -------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 436 (532)
T TIGR02343 376 -------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYS 436 (532)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCC
Confidence 479999999999999999999999999999999996 999999999999999999877666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc-----CCCceeEEccCCcccccccCCccccHHHHHHHHHHH
Q 007985 475 DADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD-----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNA 549 (582)
Q Consensus 475 ~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~-----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A 549 (582)
+.+ ++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.||+++|+.|
T Consensus 437 ~~~-~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A 515 (532)
T TIGR02343 437 GVE-QYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLA 515 (532)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHH
Confidence 665 69999999999999999999999999999999974 256799999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhc
Q 007985 550 ASVAGMVLTTQAIVV 564 (582)
Q Consensus 550 ~e~a~~lL~id~iI~ 564 (582)
+|+|++||++|++|.
T Consensus 516 ~e~a~~iL~id~ii~ 530 (532)
T TIGR02343 516 TQLVRMILKIDDVIS 530 (532)
T ss_pred HHHHHHHHhHhhhcc
Confidence 999999999999985
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.8e-87 Score=739.10 Aligned_cols=458 Identities=22% Similarity=0.324 Sum_probs=414.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-C--CCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 46 DIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-F--GSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 46 ~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~--g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
+...|.+++..|+.||..|+++|++||||+||+|||++ . |+++|||||+||+|+|+++||. |+|++++|++||
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd 82 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQD 82 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999 5 9999999999999999999997 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC-----CHHHHHHHHhhhcCC---
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE-----GRDDIKAVATISAGN--- 194 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~-----~~~~l~~va~ts~~~--- 194 (582)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.|.++|+|+++.
T Consensus 83 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~ 162 (517)
T cd03336 83 DEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKIL 162 (517)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999984 246799999987653
Q ss_pred ---chhHHHHHHHHHHHhCCC---Cc--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccC
Q 007985 195 ---DDLIGTMIADAIDKVGPD---GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 266 (582)
Q Consensus 195 ---~~~l~~li~~ai~~v~~~---g~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~ 266 (582)
+++|++++++|+.+++.. .. |...+|++++|| ++++|+++++++.+ .|+++++||+|+++|++
T Consensus 163 ~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~ 233 (517)
T cd03336 163 TQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKRIENAKILIANTP 233 (517)
T ss_pred chhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCeeccccEEEEecC
Confidence 589999999999998532 22 444689999999 89999999987643 25778999999999997
Q ss_pred cC--------------CHHHH-----------HHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCc
Q 007985 267 IS--------------AIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGF 321 (582)
Q Consensus 267 i~--------------~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~ 321 (582)
++ +++++ ...++.+.+.|++++++++.|++.++++|..++ |++|+.|
T Consensus 234 le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v-- 305 (517)
T cd03336 234 MDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHA-- 305 (517)
T ss_pred CCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecC--
Confidence 64 45544 235778889999999999999999999998865 4788765
Q ss_pred chhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccc
Q 007985 322 GERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDS 398 (582)
Q Consensus 322 ~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 398 (582)
++.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|.++
T Consensus 306 ---~~~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------- 358 (517)
T cd03336 306 ---DFDGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAG------------------- 358 (517)
T ss_pred ---CHHHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCC-------------------
Confidence 466799999999999999 689999899999999973 57889999988653
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchh
Q 007985 399 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDAD 477 (582)
Q Consensus 399 ~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~ 477 (582)
++|||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++++..+.
T Consensus 359 ----------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~- 421 (517)
T cd03336 359 ----------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGK- 421 (517)
T ss_pred ----------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCH-
Confidence 589999999999999999999999999999999998 99999999999999999987766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHH
Q 007985 478 ERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVA 553 (582)
Q Consensus 478 ~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 553 (582)
+++++++|++||+.||++||+|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.||+++|+.|+|+|
T Consensus 422 ~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a 501 (517)
T cd03336 422 KSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAA 501 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999986 3667999999999999999999999999999999999999
Q ss_pred HHHhchhhhhccCCC
Q 007985 554 GMVLTTQAIVVEKPK 568 (582)
Q Consensus 554 ~~lL~id~iI~~~p~ 568 (582)
++||++|++|..+|+
T Consensus 502 ~~iL~id~ii~~~~~ 516 (517)
T cd03336 502 EMILRVDDIIKCAPR 516 (517)
T ss_pred HHHHhHhHHhhcCCC
Confidence 999999999999885
No 28
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.2e-87 Score=740.31 Aligned_cols=462 Identities=20% Similarity=0.320 Sum_probs=418.1
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-C-----CCeEEecChHHHhhhcccCCcchhhHHHHHHHH
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-F-----GSPKVVNDGVTIARAIELADPMENAGAALIREV 117 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~-----g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~ 117 (582)
+.+...|.+++..|+.||..|+++|+|||||+||+|||++ . |+++|||||+||+|+|+++||. |+|++++
T Consensus 14 ~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~ 89 (533)
T PTZ00212 14 GAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDI 89 (533)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHH
Confidence 4457788999999999999999999999999999999999 5 9999999999999999999997 9999999
Q ss_pred HhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHhhhc
Q 007985 118 ASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG-----RDDIKAVATISA 192 (582)
Q Consensus 118 a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~ts~ 192 (582)
|++||+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ .++|.++|+|++
T Consensus 90 a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l 169 (533)
T PTZ00212 90 SKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTL 169 (533)
T ss_pred HHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999864 577999999876
Q ss_pred CC------chhHHHHHHHHHHHhCCC---C--cEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEE
Q 007985 193 GN------DDLIGTMIADAIDKVGPD---G--VLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 261 (582)
Q Consensus 193 ~~------~~~l~~li~~ai~~v~~~---g--~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 261 (582)
+. .+.|++++++|+..+... . .|.+.+|++++|| ++++|+++++++.+ .|+++++||+|+
T Consensus 170 ~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIl 240 (533)
T PTZ00212 170 SSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKIL 240 (533)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEE
Confidence 53 478999999999988432 1 2455799999999 89999999998644 267889999999
Q ss_pred EeccCc--------------CCHHHHH-----------HHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEe
Q 007985 262 VTDQKI--------------SAIKDII-----------PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAI 316 (582)
Q Consensus 262 l~d~~i--------------~~~~~i~-----------~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aV 316 (582)
++|+++ ++++++. ..++.+.+.|++++++++.|++.++++|.+++ |++|
T Consensus 241 l~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~av 314 (533)
T PTZ00212 241 VANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAI 314 (533)
T ss_pred EEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEE
Confidence 999986 5555432 34778889999999999999999999998875 4666
Q ss_pred eCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHH
Q 007985 317 KAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKEL 393 (582)
Q Consensus 317 k~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l 393 (582)
+ ++++.+++|||++|||++++ +++++++++||+|+.|+ ++++++++|.+|..
T Consensus 315 r-----~v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~--------------- 369 (533)
T PTZ00212 315 E-----HADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK--------------- 369 (533)
T ss_pred e-----cCCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC---------------
Confidence 5 55778999999999999999 68899989999999998 67889999998854
Q ss_pred hhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhc
Q 007985 394 AETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDK 472 (582)
Q Consensus 394 ~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~ 472 (582)
+++|||+|||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++++
T Consensus 370 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~ 429 (533)
T PTZ00212 370 --------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKK 429 (533)
T ss_pred --------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999998 9999999999999999999776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCcccccccCCccccHHHHHHHHHH
Q 007985 473 LEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 548 (582)
Q Consensus 473 ~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~ 548 (582)
..+. +++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+++||++.|||||+.||+++|+.
T Consensus 430 ~~~~-~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~ 508 (533)
T PTZ00212 430 VEGK-KSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCS 508 (533)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHH
Confidence 6655 569999999999999999999999999999999984 35689999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhhccCCCCC
Q 007985 549 AASVAGMVLTTQAIVVEKPKPK 570 (582)
Q Consensus 549 A~e~a~~lL~id~iI~~~p~~~ 570 (582)
|+|+|++||+||++|..+|+++
T Consensus 509 A~e~a~~iL~id~ii~~~~~~~ 530 (533)
T PTZ00212 509 ATEAAEMILRVDDIIRCAPRQR 530 (533)
T ss_pred HHHHHHHHHhhhHhhhcCCccc
Confidence 9999999999999999887543
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-87 Score=743.36 Aligned_cols=466 Identities=22% Similarity=0.318 Sum_probs=413.0
Q ss_pred hhhchH-HHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhccc
Q 007985 46 DIAFDQ-RSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTND 123 (582)
Q Consensus 46 ~~~~g~-~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~ 123 (582)
...+|. +++..|+.+|..|+++|++||||+||+|||++ +|+++|||||+||+|+|+++||+ |+|++++|++||+
T Consensus 11 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~ 86 (531)
T TIGR02346 11 RHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQEN 86 (531)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhh
Confidence 345564 59999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhccc-ccCC---HHHHHHHHhhhcC-----C
Q 007985 124 SAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR-PIEG---RDDIKAVATISAG-----N 194 (582)
Q Consensus 124 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~-~v~~---~~~l~~va~ts~~-----~ 194 (582)
++||||||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ ++++ .+.+.++++|+++ +
T Consensus 87 ~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~ 166 (531)
T TIGR02346 87 EIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGN 166 (531)
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCch
Confidence 99999999999999999999999999999999999999999999999999986 7743 6789999998874 3
Q ss_pred chhHHHHHHHHHHHhCCCC--c-----E--EEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEecc
Q 007985 195 DDLIGTMIADAIDKVGPDG--V-----L--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQ 265 (582)
Q Consensus 195 ~~~l~~li~~ai~~v~~~g--~-----I--~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 265 (582)
+++|++++++|+.++++++ . | ....|++++|+ ++++|++|++++. .+++.++||+|+++++
T Consensus 167 ~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~ 236 (531)
T TIGR02346 167 EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSC 236 (531)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEec
Confidence 8999999999999998654 2 2 33589999998 9999999999832 1456789999999988
Q ss_pred Cc-------------CCHH-----------HHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCc
Q 007985 266 KI-------------SAIK-----------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGF 321 (582)
Q Consensus 266 ~i-------------~~~~-----------~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~ 321 (582)
++ ++++ .+.++++++.+.|++|||++++|++.++++|..++ |+||++|+
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~------I~av~~~~- 309 (531)
T TIGR02346 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYN------IMVLKIPS- 309 (531)
T ss_pred CcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCC------cEEEecCC-
Confidence 73 2332 35678999999999999999999999999887543 68888765
Q ss_pred chhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccc
Q 007985 322 GERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDS 398 (582)
Q Consensus 322 ~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 398 (582)
..+|+|||.+|||++++ ++++++.++||+|++|++ +++++.+|.+|..
T Consensus 310 ----~~~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------- 360 (531)
T TIGR02346 310 ----KFELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------- 360 (531)
T ss_pred ----HHHHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------
Confidence 45899999999999998 688898899999999985 4678888887642
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchh
Q 007985 399 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDAD 477 (582)
Q Consensus 399 ~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~ 477 (582)
.+++|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+..+.
T Consensus 361 --------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~- 425 (531)
T TIGR02346 361 --------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGL- 425 (531)
T ss_pred --------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCH-
Confidence 24789999999999999999999999999999999999 99999999999999999987766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhc----CCCceeEEccCCc--ccccccCCccccHHHHHHHHHHHHH
Q 007985 478 ERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKD----SEWTTGYNAMTDK--YENMLQAGVIDPAKVTRCALQNAAS 551 (582)
Q Consensus 478 ~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~----~~~~~G~d~~~g~--i~d~~~~gI~dp~~vk~~~l~~A~e 551 (582)
+++++++|++||+.||++|++|||+|+.+++.+|+. .+.++|||+.+|+ ++||++.|||||+.||+++|++|+|
T Consensus 426 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 505 (531)
T TIGR02346 426 DQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATE 505 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999976 3567999999999 5999999999999999999999999
Q ss_pred HHHHHhchhhhhccCCCCCCCCCCCCCC
Q 007985 552 VAGMVLTTQAIVVEKPKPKTPVAAPPQG 579 (582)
Q Consensus 552 ~a~~lL~id~iI~~~p~~~~~~~~~~~~ 579 (582)
+|++||+||++|..+|. .++..|++
T Consensus 506 ~a~~iL~id~ii~~~~~---~~~~~~~~ 530 (531)
T TIGR02346 506 AAVTVLRVDQIIMAKPA---GGPKPPQG 530 (531)
T ss_pred HHHHHhhhhHhhccCCC---CCCCCCCC
Confidence 99999999999988753 33444543
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.8e-86 Score=724.40 Aligned_cols=440 Identities=23% Similarity=0.340 Sum_probs=403.2
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
..+...|++++..|+.+|..|+++|++||||+||+|||++ .|+++|||||+||+++|+++||. |+|++++|++||
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~ 83 (480)
T cd03337 8 NTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQD 83 (480)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHH
Confidence 3457788999999999999999999999999999999999 99999999999999999999997 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcC------C
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAG------N 194 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~------~ 194 (582)
+++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|++ +.+.+.++++|+++ +
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~ 163 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRW 163 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhH
Confidence 999999999999999999999999999999999999999999999999999999987 78889999999987 3
Q ss_pred chhHHHHHHHHHHHhCCC--C---------cEEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEE
Q 007985 195 DDLIGTMIADAIDKVGPD--G---------VLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 261 (582)
Q Consensus 195 ~~~l~~li~~ai~~v~~~--g---------~I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 261 (582)
++.|++++++|+..++++ + .|++ .+|++..|| ++++|++|++++.+| +|+.+++||+|+
T Consensus 164 ~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIl 235 (480)
T cd03337 164 SDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIV 235 (480)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEE
Confidence 578999999999999754 2 1333 579999998 999999999998886 478899999999
Q ss_pred EeccCcCCHHHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEe
Q 007985 262 VTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 341 (582)
Q Consensus 262 l~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~ii 341 (582)
+++++++. |||++++|+++++++|.+|+ |++|+ ++++++|+|||++|||+++
T Consensus 236 ll~~~Le~-----------------lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~L~rIa~~tGa~ii 287 (480)
T cd03337 236 LLDCPLEY-----------------LVITEKGVSDLAQHYLVKAG------ITALR-----RVRKTDNNRIARACGATIV 287 (480)
T ss_pred EEecCcce-----------------EEEeCCCccHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEe
Confidence 99999775 99999999999999999875 46665 5689999999999999999
Q ss_pred ccccCCcccCCCcCCcce-eEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeE
Q 007985 342 AGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVA 417 (582)
Q Consensus 342 s~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~ 417 (582)
+ ++++++++.||+ |+.++. +++++++|++|+++ +.|
T Consensus 288 ~-----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~ 327 (480)
T cd03337 288 N-----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KAC 327 (480)
T ss_pred c-----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEE
Confidence 9 688888899999 555543 46788999988664 579
Q ss_pred EEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007985 418 VIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLI 496 (582)
Q Consensus 418 tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L 496 (582)
||+|||+|+.+++|.||+++||+++++++++++ +|||||++|++++.+|++++.+..+.+ ++++++|++||+.||++|
T Consensus 328 TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~-~~~~~~~a~al~~ip~~L 406 (480)
T cd03337 328 TILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVE-QWPYKAVASALEVIPRTL 406 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 999999999999999999887666654 699999999999999999
Q ss_pred HHhcCCchHHHHHHhhcC-----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhc
Q 007985 497 AHNAGVEGEVVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 564 (582)
Q Consensus 497 ~~NaG~d~~~vi~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 564 (582)
++|||+|+.+++.+|++. +.++|+|+.+|+++||++.|||||+.+|+++|++|+|+|++||++|++|.
T Consensus 407 a~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 407 AQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999999999999773 45799999999999999999999999999999999999999999999874
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-85 Score=724.52 Aligned_cols=459 Identities=22% Similarity=0.345 Sum_probs=412.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-C--CCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcc
Q 007985 46 DIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-F--GSPKVVNDGVTIARAIELADPMENAGAALIREVASKTN 122 (582)
Q Consensus 46 ~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~--g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d 122 (582)
+...|.+++..|++|+..++++|++||||+||+|||++ . |+++|||||+||+|+|+++||. |+|++++|++||
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd 83 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQD 83 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhH
Confidence 46678889999999999999999999999999999999 6 9999999999999999999997 999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHhhhcCC---
Q 007985 123 DSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG-----RDDIKAVATISAGN--- 194 (582)
Q Consensus 123 ~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~ts~~~--- 194 (582)
+++||||||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++ .++|.++|+|+++.
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~ 163 (519)
T TIGR02341 84 DEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKIL 163 (519)
T ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999853 46799999998864
Q ss_pred ---chhHHHHHHHHHHHhCCC---CcEEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccC
Q 007985 195 ---DDLIGTMIADAIDKVGPD---GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK 266 (582)
Q Consensus 195 ---~~~l~~li~~ai~~v~~~---g~I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~ 266 (582)
.+.|++++++|+..+... ..|.+ .+|++++|+ ++++|+++++.+.+ .|+.+++||+|+++|++
T Consensus 164 ~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~ 234 (519)
T TIGR02341 164 SQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTP 234 (519)
T ss_pred hhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecC
Confidence 378999999999988431 23554 489999999 89999999997543 25778999999999998
Q ss_pred cCC--------------HHHH-----------HHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCc
Q 007985 267 ISA--------------IKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGF 321 (582)
Q Consensus 267 i~~--------------~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~ 321 (582)
++. ++++ ...++.+.+.|++++++++.|++.++++|..++ |++|+.|
T Consensus 235 Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~-- 306 (519)
T TIGR02341 235 MDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHA-- 306 (519)
T ss_pred CCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecC--
Confidence 642 3222 234678889999999999999999999998765 5777765
Q ss_pred chhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhccc
Q 007985 322 GERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAETDS 398 (582)
Q Consensus 322 ~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~ 398 (582)
++.+|+|||++|||++++ +++++++++||+|+.|+ ++++++++|.+|.++
T Consensus 307 ---~~~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------- 359 (519)
T TIGR02341 307 ---DFEGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLG------------------- 359 (519)
T ss_pred ---CHHHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCCC-------------------
Confidence 466999999999999999 68889889999999887 357889999988653
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchh
Q 007985 399 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDAD 477 (582)
Q Consensus 399 ~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~ 477 (582)
++|||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|++++.+|++++++..+.
T Consensus 360 ----------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~- 422 (519)
T TIGR02341 360 ----------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGK- 422 (519)
T ss_pred ----------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCCh-
Confidence 689999999999999999999999999999999996 99999999999999999987766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHH
Q 007985 478 ERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVA 553 (582)
Q Consensus 478 ~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 553 (582)
+++++++|++||+.||++||+|||+|+.+++.+|+.. +.++|||+.+|+++||++.|||||+.||+++|+.|+|+|
T Consensus 423 ~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 502 (519)
T TIGR02341 423 EALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAA 502 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999773 567999999999999999999999999999999999999
Q ss_pred HHHhchhhhhccCCCC
Q 007985 554 GMVLTTQAIVVEKPKP 569 (582)
Q Consensus 554 ~~lL~id~iI~~~p~~ 569 (582)
++||++|++|..+|+.
T Consensus 503 ~~iL~id~ii~~~~~~ 518 (519)
T TIGR02341 503 EVILRVDNIIKAAPRA 518 (519)
T ss_pred HHHHhHHHHHhcCCCC
Confidence 9999999999999853
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-84 Score=711.64 Aligned_cols=437 Identities=22% Similarity=0.305 Sum_probs=396.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCCC
Q 007985 50 DQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDG 128 (582)
Q Consensus 50 g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GDG 128 (582)
+++++..|+.+|..|+++|++||||+||+|||++ +|++++||||+||+|+|+++||+ ++|++++|++||+++|||
T Consensus 6 ~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDG 81 (472)
T cd03341 6 LEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDG 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCC
Confidence 4789999999999999999999999999999999 99999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccc-cC---CHHHHHHHHhhhcC-----CchhHH
Q 007985 129 TTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP-IE---GRDDIKAVATISAG-----NDDLIG 199 (582)
Q Consensus 129 TTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~-v~---~~~~l~~va~ts~~-----~~~~l~ 199 (582)
|||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++ ++ +.+.+..+++|+++ ++++|+
T Consensus 82 TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 82 TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999876 53 45678888888753 468999
Q ss_pred HHHHHHHHHhCCC--Cc-------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCH
Q 007985 200 TMIADAIDKVGPD--GV-------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAI 270 (582)
Q Consensus 200 ~li~~ai~~v~~~--g~-------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~ 270 (582)
+++++|+.+++++ |. |....|++++|| ++++|++|++.+ .+++++++||+|++++++++.
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~---------~~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREP---------EGSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEcccc---------CCCceeccCCcEEEEeccccC-
Confidence 9999999999865 43 334589999999 999999998743 234578999999999999887
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCccc
Q 007985 271 KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIE 350 (582)
Q Consensus 271 ~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~ 350 (582)
|++|||++++|+++++++|..+ +|++|++| ++.+|+|||++||+++++ +++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~-----~~~~Le~Ia~~tGa~ii~-----~~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKIN-----SKFELRRLCRTVGATPLP-----RLG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeC-----CHHHHHHHHHHhCCEEec-----ccc
Confidence 8999999999999999997653 36888866 477899999999999999 688
Q ss_pred CCCcCCcceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHH
Q 007985 351 NTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATET 427 (582)
Q Consensus 351 ~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~ 427 (582)
+++++++|+|++|++. ++++++|.+|.+. +++|||+|||+|+.
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------------------~~~~TI~lrG~t~~ 327 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKED----------------------------------SKIATIVLRGATQN 327 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------------------------------CCeEEEEEECCCHH
Confidence 8888999999999864 4889999987541 36899999999999
Q ss_pred HHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Q 007985 428 ELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEV 506 (582)
Q Consensus 428 ~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~ 506 (582)
+++|+||+++||++++++++++| +|||||++|++++.+|++++.+..+. +++++++|++||+.||++|++|||+|+.+
T Consensus 328 ~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~-~~~~~~~~a~al~~ip~~L~~NaG~d~~~ 406 (472)
T cd03341 328 ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGL-EQYAIKKFAEAFEVVPRTLAENAGLDATE 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999 99999999999999999987766554 57999999999999999999999999999
Q ss_pred HHHHhhc----CCCceeEEccCC--cccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhcc
Q 007985 507 VVEKVKD----SEWTTGYNAMTD--KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 565 (582)
Q Consensus 507 vi~~l~~----~~~~~G~d~~~g--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 565 (582)
++.+|+. .+.++|||+.+| +++||++.|||||+.||+++|++|+|+|++||+||++|..
T Consensus 407 ~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 407 VLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999965 255799999999 9999999999999999999999999999999999999854
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-84 Score=710.40 Aligned_cols=438 Identities=37% Similarity=0.550 Sum_probs=404.4
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccc
Q 007985 46 DIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDS 124 (582)
Q Consensus 46 ~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~ 124 (582)
...+|++++..|++||..|+++|++||||+||+|||++ +|++++||||+||+|+|+++||. ++|+++++++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~~ 77 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDDE 77 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHhH
Confidence 45788999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccc--cCCHHHHHHHHhhhcC------Cch
Q 007985 125 AGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARP--IEGRDDIKAVATISAG------NDD 196 (582)
Q Consensus 125 ~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~--v~~~~~l~~va~ts~~------~~~ 196 (582)
+||||||+++|+++|++++.+++++|+||..|++||+.|++.+++.|+++++| +.+.+++.++|+|+++ +++
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 157 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDD 157 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999 6678899999999998 689
Q ss_pred hHHHHHHHHHHHhCC------CCcEEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcC
Q 007985 197 LIGTMIADAIDKVGP------DGVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKIS 268 (582)
Q Consensus 197 ~l~~li~~ai~~v~~------~g~I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 268 (582)
++++++++|+.++++ .+.|++ ..|++++|| ++++|++|+++|.+|+| +++++||+|+++|++++
T Consensus 158 ~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 158 FLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcc
Confidence 999999999999987 456655 589999999 89999999999999874 67899999999999988
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCc
Q 007985 269 AIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLL 348 (582)
Q Consensus 269 ~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~ 348 (582)
. ||++.++|+++++++|..++ |++|+ ++++++|+|||.+||+++++ +
T Consensus 230 ~-----------------lIi~~~~I~~~al~~L~~~~------I~~v~-----~~~~~~L~~Ia~~tGa~ii~-----~ 276 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKLG------IMAVR-----RVRKEDLERIAKATGATIVS-----R 276 (464)
T ss_pred e-----------------EEecCCCcCHHHHHHHHHCC------eEEEE-----eCCHHHHHHHHHHhCCEEec-----c
Confidence 7 77788889999999998854 57775 46899999999999999998 6
Q ss_pred ccCCCcCCcceeEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCC
Q 007985 349 IENTSVEQLGTARKVTI---RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAAT 425 (582)
Q Consensus 349 ~~~~~~~~lG~~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t 425 (582)
+++++++.+|+|+.|++ +++++++|.+|.. +++|||+|||+|
T Consensus 277 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG~t 321 (464)
T cd00309 277 LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRGAT 321 (464)
T ss_pred cccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeCCc
Confidence 88888899999999985 4567888887754 258999999999
Q ss_pred HHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 007985 426 ETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEG 504 (582)
Q Consensus 426 ~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~ 504 (582)
+.+++|+||+++||+++++++++++ +|||||++|++++++|++++.+.++. +++++++|++||+.||++|++|||+|+
T Consensus 322 ~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~-~~~~~~~~a~aL~~ip~~L~~NaG~d~ 400 (464)
T cd00309 322 EVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGK-EQLGIEAFADALEVIPRTLAENAGLDP 400 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999999999999999999999995 99999999999999999987765554 579999999999999999999999999
Q ss_pred HHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhc
Q 007985 505 EVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV 564 (582)
Q Consensus 505 ~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 564 (582)
.+++.+|+.. ..++|+|..+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|.
T Consensus 401 ~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 401 IEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999874 34789999999999999999999999999999999999999999999974
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-85 Score=658.43 Aligned_cols=473 Identities=19% Similarity=0.290 Sum_probs=434.0
Q ss_pred cceecccchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHH
Q 007985 37 RFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIR 115 (582)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~ 115 (582)
++++--.+++-..|+-..-+|+.+|..+++.|++||||+||||+|++ .|+.+|+|||+||+|-+++-||+ |+.++
T Consensus 5 ~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlV 80 (543)
T KOG0361|consen 5 PIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLV 80 (543)
T ss_pred CEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHH
Confidence 44444457888889989999999999999999999999999999999 99999999999999999999999 99999
Q ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--C----HHHHHHHHh
Q 007985 116 EVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--G----RDDIKAVAT 189 (582)
Q Consensus 116 e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~ 189 (582)
++|++||.++||||||+|+|++|+|+++--+++.|+||..|+++|++|...+++.|+++++.++ + ++.|.+.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999886 2 456888999
Q ss_pred hhcC------CchhHHHHHHHHHHHhCCCC---c--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCe
Q 007985 190 ISAG------NDDLIGTMIADAIDKVGPDG---V--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENA 258 (582)
Q Consensus 190 ts~~------~~~~l~~li~~ai~~v~~~g---~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~ 258 (582)
|+++ +.++|++|++||+..++.+. . |++++|++++|| .+++|+-|.+.|....| |.+|++|.||
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~Np 235 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNP 235 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCc
Confidence 9875 36899999999999987542 1 677899999999 79999999999998887 5678899999
Q ss_pred eEEEeccCc-------------CCHHHH-----------HHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEE
Q 007985 259 RVLVTDQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVA 314 (582)
Q Consensus 259 ~Ill~d~~i-------------~~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~ 314 (582)
||++++.++ ++++++ ...|+++..+|.++|+..-.|.|.|.+||+.+.+
T Consensus 236 kIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi------- 308 (543)
T KOG0361|consen 236 KILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI------- 308 (543)
T ss_pred eEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-------
Confidence 999998753 455544 3578899999999999999999999999998754
Q ss_pred EeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHH
Q 007985 315 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKK 391 (582)
Q Consensus 315 aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~ 391 (582)
.|-|++++++|.|+..+||+++++ +..++.++.||.|..|+ +++++|-+|+||+..
T Consensus 309 ----FCAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a------------ 367 (543)
T KOG0361|consen 309 ----FCAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA------------ 367 (543)
T ss_pred ----eecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc------------
Confidence 366899999999999999999998 68999999999999997 689999999999764
Q ss_pred HHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhh
Q 007985 392 ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIK 470 (582)
Q Consensus 392 ~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~ 470 (582)
..||+++||+-++.++|.+|++|||++++|.|+++. +|+|||++||++|+.|++++
T Consensus 368 -----------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S 424 (543)
T KOG0361|consen 368 -----------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYS 424 (543)
T ss_pred -----------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhh
Confidence 479999999999999999999999999999999998 99999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHH
Q 007985 471 DKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCAL 546 (582)
Q Consensus 471 ~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l 546 (582)
.++.++. ++.+.+|++||+.||++||.|+|+|...++++|+.. +.|||+|.+++.+.|+++.+||||..||.+++
T Consensus 425 ~ti~gK~-q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai 503 (543)
T KOG0361|consen 425 RTIAGKQ-QLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAI 503 (543)
T ss_pred cccCcHH-HHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHH
Confidence 9988875 589999999999999999999999999999999884 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhccCCCCC
Q 007985 547 QNAASVAGMVLTTQAIVVEKPKPK 570 (582)
Q Consensus 547 ~~A~e~a~~lL~id~iI~~~p~~~ 570 (582)
..|+|+|++||++|..|..++...
T Consensus 504 ~aateAa~lIlsvDeTikn~~S~~ 527 (543)
T KOG0361|consen 504 TAATEAACLILSVDETIKNPKSQS 527 (543)
T ss_pred HHHHHhhhheEehhhhhcCCcccC
Confidence 999999999999999998776443
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1e-78 Score=669.76 Aligned_cols=440 Identities=30% Similarity=0.477 Sum_probs=402.5
Q ss_pred HHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCCCcchHHHHHHHHHHH
Q 007985 64 LSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKL 142 (582)
Q Consensus 64 la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GDGTTt~vvLa~~Ll~~ 142 (582)
|+++|++||||+||+|||.+ .|++++||||+||+++++++||+ ++|+++++++|++++||||||+++|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999 99999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCH-HHHHHHHhhhcCCc------hhHHHHHHHHHHHhCCC---
Q 007985 143 GLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGR-DDIKAVATISAGND------DLIGTMIADAIDKVGPD--- 212 (582)
Q Consensus 143 ~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~-~~l~~va~ts~~~~------~~l~~li~~ai~~v~~~--- 212 (582)
+.+++++|+||..|++||+.+.+.+++.|+++++++++. +.+.++|+|+++++ +++++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999876 89999999999876 89999999999544321
Q ss_pred Cc--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHH------------------
Q 007985 213 GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKD------------------ 272 (582)
Q Consensus 213 g~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~------------------ 272 (582)
+. +....|++.+|| ++++|++|+++|.++ +|+++++||+|++++++++..+.
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 12 344688899999 899999999999886 46778899999999998876655
Q ss_pred -----HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCC
Q 007985 273 -----IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGL 347 (582)
Q Consensus 273 -----i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~ 347 (582)
+.++++++.+.|++|||++++|++.++++|..|++ .+ +.++++++|++|+.+||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~-----i~~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LV-----IRRVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EE-----ESSEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hc-----cccchHHHHHhhhcccCCcEec-----
Confidence 78999999999999999999999999999998875 33 3577999999999999999999
Q ss_pred cccCCCcCCcceeEEE---EEecceEEEEeC--CCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEc
Q 007985 348 LIENTSVEQLGTARKV---TIRKDSTTIIAD--AASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVG 422 (582)
Q Consensus 348 ~~~~~~~~~lG~~~~v---~i~~~~~~~~~~--~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~ 422 (582)
++++++++++|+|+.+ ++++++++++++ |. .+..+||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEec
Confidence 6788888889999999 567899999983 42 2468999999
Q ss_pred CCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007985 423 AATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAG 501 (582)
Q Consensus 423 G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG 501 (582)
|+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++.+.++. +++++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~-~~~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGK-EQLAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999986 99999999999999999888765554 579999999999999999999999
Q ss_pred CchHHHHHHhhc---CCCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCC
Q 007985 502 VEGEVVVEKVKD---SEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKP 567 (582)
Q Consensus 502 ~d~~~vi~~l~~---~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p 567 (582)
+|+.+++++|+. .++++|||+.+|++.||.+.|||||+.+|+++|+.|+|+|++||+||++|..+|
T Consensus 417 ~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 417 LDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp STHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred CCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999988 577999999999999999999999999999999999999999999999999886
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-77 Score=592.56 Aligned_cols=464 Identities=21% Similarity=0.346 Sum_probs=415.2
Q ss_pred chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec---CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhh
Q 007985 44 AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE---FGSPKVVNDGVTIARAIELADPMENAGAALIREVASK 120 (582)
Q Consensus 44 ~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~---~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~ 120 (582)
......|+.+|.+.+.|...+.|+|+|||||+||+||+.. .|.+.|||||+||||++.+++|. |++|++.++-
T Consensus 10 ~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~v 85 (527)
T KOG0363|consen 10 GATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKV 85 (527)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccc
Confidence 3445678999999999999999999999999999999987 47899999999999999999999 9999999999
Q ss_pred cccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCC-----HHHHHHHHhhhcC--
Q 007985 121 TNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEG-----RDDIKAVATISAG-- 193 (582)
Q Consensus 121 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-----~~~l~~va~ts~~-- 193 (582)
||+++||||||++||+++||+++.+++.+.+||+.|+.||+.|...+++.|.+.++.-.+ +++|.++|+|.+.
T Consensus 86 QD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SK 165 (527)
T KOG0363|consen 86 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSK 165 (527)
T ss_pred cccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876442 5789999999764
Q ss_pred ----CchhHHHHHHHHHHHhCCCCc-----EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEec
Q 007985 194 ----NDDLIGTMIADAIDKVGPDGV-----LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTD 264 (582)
Q Consensus 194 ----~~~~l~~li~~ai~~v~~~g~-----I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 264 (582)
+.++|++++++|+.++...++ |.+..|++++|| .+-+|+.+++.+-. +.|+.++||+||+-+
T Consensus 166 iLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIAN 236 (527)
T KOG0363|consen 166 ILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIAN 236 (527)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEec
Confidence 368999999999999865442 555799999999 78999999985422 357789999999987
Q ss_pred cCc--------------CCH-----------HHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCC
Q 007985 265 QKI--------------SAI-----------KDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAP 319 (582)
Q Consensus 265 ~~i--------------~~~-----------~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~ 319 (582)
.++ .+. +++...++++.++|+|+.|-.+-|-++-.++|.... |++|...
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dag------i~aIEHA 310 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAG------IMAIEHA 310 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcC------cceeecc
Confidence 653 222 135677899999999999999888888888887643 4666654
Q ss_pred CcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhc
Q 007985 320 GFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAET 396 (582)
Q Consensus 320 ~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~ 396 (582)
.| +-.||++.+||+.++| ++++++...||+|+.++ ++++++.-|+||..
T Consensus 311 DF-----dGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------ 362 (527)
T KOG0363|consen 311 DF-----DGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------ 362 (527)
T ss_pred cc-----hhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeeccccc------------------
Confidence 44 5678999999999999 79999999999999987 68999999999843
Q ss_pred cchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccc
Q 007985 397 DSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLED 475 (582)
Q Consensus 397 ~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~ 475 (582)
|..|||++||+|++.+||.+|++|||||++....++. +|.|||+.||..+..+.+++...++
T Consensus 363 -----------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pG 425 (527)
T KOG0363|consen 363 -----------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPG 425 (527)
T ss_pred -----------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCc
Confidence 4579999999999999999999999999999999997 9999999999999999999988887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHH
Q 007985 476 ADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAAS 551 (582)
Q Consensus 476 ~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e 551 (582)
.+ ..++++|++||.++|.+||.|+|+|+.+++.+|+.. ...+|+|..+|++.||.+.||+|.+.+|.+.+.+|.|
T Consensus 426 ke-a~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasE 504 (527)
T KOG0363|consen 426 KE-ALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASE 504 (527)
T ss_pred hh-hHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHH
Confidence 75 689999999999999999999999999999999985 5789999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhccCCCCCCC
Q 007985 552 VAGMVLTTQAIVVEKPKPKTP 572 (582)
Q Consensus 552 ~a~~lL~id~iI~~~p~~~~~ 572 (582)
.|.||||+|.||...|+++.+
T Consensus 505 aae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 505 AAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHhhhhhhhcCCccccc
Confidence 999999999999999998754
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-76 Score=588.86 Aligned_cols=459 Identities=22% Similarity=0.326 Sum_probs=411.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCC
Q 007985 49 FDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGD 127 (582)
Q Consensus 49 ~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GD 127 (582)
..++.|.+|+.+.+.++|+++|||||+||||||.. .|+++|||||+||||.|++-||. |+++++++..||.++||
T Consensus 23 kp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGD 98 (534)
T KOG0358|consen 23 KPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGD 98 (534)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccC
Confidence 45788999999999999999999999999999999 99999999999999999999999 99999999999999999
Q ss_pred CcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcC------CchhHH
Q 007985 128 GTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAG------NDDLIG 199 (582)
Q Consensus 128 GTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~------~~~~l~ 199 (582)
||||+|+|++.||+.+.+|+++|+||..|...|+.|.+..+++|++++.|++ +++.|.+-|+||+| +...++
T Consensus 99 GTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~lla 178 (534)
T KOG0358|consen 99 GTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLA 178 (534)
T ss_pred CceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999998886 78889999999986 357899
Q ss_pred HHHHHHHHHhCC-C-------CcEEE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCc--
Q 007985 200 TMIADAIDKVGP-D-------GVLSI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKI-- 267 (582)
Q Consensus 200 ~li~~ai~~v~~-~-------g~I~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i-- 267 (582)
.+.++|+.++.. . ..|++ +.|+.++|+ ++++|++|+...... ..|..+++++|-++.+.|
T Consensus 179 pmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~ 250 (534)
T KOG0358|consen 179 PMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISP 250 (534)
T ss_pred hHHHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecC
Confidence 999999998743 1 12443 689999999 999999999865432 145678888888776643
Q ss_pred -----------CCHH-----------HHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhh
Q 007985 268 -----------SAIK-----------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERR 325 (582)
Q Consensus 268 -----------~~~~-----------~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~ 325 (582)
+++. .++.+++++++.|++++++++.|=.++++-|..|.+. .+++++|| ++.
T Consensus 251 PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik-----die 324 (534)
T KOG0358|consen 251 PKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK-----DIE 324 (534)
T ss_pred CCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc-----ccc
Confidence 2221 2568889999999999999999988888888887773 47789887 567
Q ss_pred hHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEE----ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhh
Q 007985 326 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTI----RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYD 401 (582)
Q Consensus 326 ~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i----~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~ 401 (582)
+++.|-+++.+|.++++ +++..+++.||+++-++. ++++++-+.|+.+.
T Consensus 325 Rediefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~---------------------- 377 (534)
T KOG0358|consen 325 REDIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA---------------------- 377 (534)
T ss_pred HhhHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC----------------------
Confidence 89999999999999999 699999999999999974 45578888876553
Q ss_pred HHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHH
Q 007985 402 SEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERL 480 (582)
Q Consensus 402 ~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~ 480 (582)
|..++|++||.+...++|.+|++|||||++|+.++.. ++||||+.|+.++..|.+++.+..+.+ .|
T Consensus 378 ------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~-~y 444 (534)
T KOG0358|consen 378 ------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVE-AY 444 (534)
T ss_pred ------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccch-hH
Confidence 5789999999999999999999999999999999986 999999999999999999999888875 58
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHH
Q 007985 481 GADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMV 556 (582)
Q Consensus 481 ~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~l 556 (582)
++++|++||+.||.+||+|||++|..++.+|++. +.++|++.+.|.+.||++..|+.|+.|..++++.|+|++.+|
T Consensus 445 c~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~I 524 (534)
T KOG0358|consen 445 CWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSI 524 (534)
T ss_pred HHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 689999999999999999999999999999999999999999
Q ss_pred hchhhhhcc
Q 007985 557 LTTQAIVVE 565 (582)
Q Consensus 557 L~id~iI~~ 565 (582)
|+||+++..
T Consensus 525 LKIDDIv~a 533 (534)
T KOG0358|consen 525 LKIDDIVNA 533 (534)
T ss_pred hhhhhhccc
Confidence 999999753
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-69 Score=551.95 Aligned_cols=466 Identities=22% Similarity=0.285 Sum_probs=412.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccc
Q 007985 46 DIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDS 124 (582)
Q Consensus 46 ~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~ 124 (582)
+...|+..|..|..++..++++|++||||-|++||+++ +|++.+||||+|||+.+.++||+ +++|++.++.||++
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~e 88 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEE 88 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhcccc
Confidence 45678889999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhh-cccccC--CHHHHHHHHhhhcCC------c
Q 007985 125 AGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK-RARPIE--GRDDIKAVATISAGN------D 195 (582)
Q Consensus 125 ~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~-~s~~v~--~~~~l~~va~ts~~~------~ 195 (582)
+|||||++++++++||+++.+|+..++||..|+.||+.|+..+++++++ .++|++ +++.|.++++|+++. .
T Consensus 89 vgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 89 VGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccch
Confidence 9999999999999999999999999999999999999999999999976 578887 567899999998753 5
Q ss_pred hhHHHHHHHHHHHhCC---CC---------cEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEe
Q 007985 196 DLIGTMIADAIDKVGP---DG---------VLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVT 263 (582)
Q Consensus 196 ~~l~~li~~ai~~v~~---~g---------~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~ 263 (582)
++|++++++|+..+.- +| +|-+-+|.+.-|| .++.|+-++....+. .|+..+.|+||+++
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacl 240 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACL 240 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeE
Confidence 8999999999986532 23 2444699999999 799999999876663 47888999999999
Q ss_pred ccCc-------------CCHHHH-----------HHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCC
Q 007985 264 DQKI-------------SAIKDI-----------IPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAP 319 (582)
Q Consensus 264 d~~i-------------~~~~~i-----------~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~ 319 (582)
|+.+ .+++++ .+-++++...|+++|+++++|||..+.+|+.+.. +
T Consensus 241 d~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veaga------m----- 309 (545)
T KOG0360|consen 241 DFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA------M----- 309 (545)
T ss_pred ecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcch------h-----
Confidence 9863 445433 2346688899999999999999999999998753 3
Q ss_pred CcchhhhHHHHHHHHHhCCeEeccccCCcc-cCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 007985 320 GFGERRKALLQDIAIVTGAEFQAGDLGLLI-ENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAE 395 (582)
Q Consensus 320 ~~~~~~~~~l~~ia~~tG~~iis~~~~~~~-~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 395 (582)
++++.++++|++|+++||+++++..-++.- +..++..+|+|+.|. +++++++++.+...
T Consensus 310 AVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka----------------- 372 (545)
T KOG0360|consen 310 AVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA----------------- 372 (545)
T ss_pred hhHHHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc-----------------
Confidence 447889999999999999999994322221 245678899999986 68999999987532
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhccc
Q 007985 396 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLE 474 (582)
Q Consensus 396 ~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~ 474 (582)
..|+|++||++++.+||++|++|||+++++..++++ +|||||++|.+++-+|++++.+..
T Consensus 373 -------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~ 433 (545)
T KOG0360|consen 373 -------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVG 433 (545)
T ss_pred -------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCc
Confidence 258999999999999999999999999999999999 999999999999999999999887
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC------------CCceeEEccCCcccccccCCccccHHHH
Q 007985 475 DADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS------------EWTTGYNAMTDKYENMLQAGVIDPAKVT 542 (582)
Q Consensus 475 ~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~------------~~~~G~d~~~g~i~d~~~~gI~dp~~vk 542 (582)
++++ +++.-|+.||..||++|+-|++.|+.+++.+++.. ..++|.|..+|++.|.++.|++||..+|
T Consensus 434 srE~-laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~k 512 (545)
T KOG0360|consen 434 SREQ-LAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVK 512 (545)
T ss_pred cHHH-HHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceee
Confidence 7765 78888999999999999999999999999999884 2489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhccCCCCCC
Q 007985 543 RCALQNAASVAGMVLTTQAIVVEKPKPKT 571 (582)
Q Consensus 543 ~~~l~~A~e~a~~lL~id~iI~~~p~~~~ 571 (582)
...|+.|+|.+..+||+|++|.-.|..+.
T Consensus 513 vksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 513 VKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred hhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 99999999999999999999987776553
No 39
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-69 Score=550.91 Aligned_cols=466 Identities=22% Similarity=0.311 Sum_probs=419.7
Q ss_pred ecccchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHH
Q 007985 40 VRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVA 118 (582)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a 118 (582)
+.+....+..|..++..|+++.+.++|+++++|||+.|.||+.+ .|.+..||||..|+++|++.||. |+-+.+++
T Consensus 7 ~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~ 82 (527)
T KOG0364|consen 7 VLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELS 82 (527)
T ss_pred ecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhh
Confidence 33445666778888899999999999999999999999999999 99999999999999999999999 99999999
Q ss_pred hhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccC--CHHHHHHHHhhhcC---
Q 007985 119 SKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIE--GRDDIKAVATISAG--- 193 (582)
Q Consensus 119 ~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~--- 193 (582)
.+||+++||||||+++|++|+|..+..++++|+||..+++.|.+|++.++..++++++|++ +...++.+..++..
T Consensus 83 rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~ 162 (527)
T KOG0364|consen 83 RTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKF 162 (527)
T ss_pred hcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999888876 55568878777654
Q ss_pred ---CchhHHHHHHHHHHHhCCC-Cc---------EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeE
Q 007985 194 ---NDDLIGTMIADAIDKVGPD-GV---------LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARV 260 (582)
Q Consensus 194 ---~~~~l~~li~~ai~~v~~~-g~---------I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~I 260 (582)
..+..+.+..+|+++++.+ |. +.+++|+.++|| ++++|+.+.+...|| +|+..++||+|
T Consensus 163 ~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hp-------kmrr~Ienpri 234 (527)
T KOG0364|consen 163 NSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHP-------KMRRAIENPRI 234 (527)
T ss_pred hhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcH-------HHHHHhhcCcE
Confidence 3577899999999999865 32 344799999999 899999999999997 47789999999
Q ss_pred EEeccCcCC------------------------HHHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEe
Q 007985 261 LVTDQKISA------------------------IKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAI 316 (582)
Q Consensus 261 ll~d~~i~~------------------------~~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aV 316 (582)
+++|+++.. .+++..+++.+....++||++.+++++.|.++|.++++.
T Consensus 235 vLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT-------- 306 (527)
T KOG0364|consen 235 VLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANIT-------- 306 (527)
T ss_pred EEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCch--------
Confidence 999998521 234567888999999999999999999999999988753
Q ss_pred eCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcce-eEEEEE---ecceEEEEeCCCChHHHHHHHHHHHHH
Q 007985 317 KAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGT-ARKVTI---RKDSTTIIADAASKDEIQARIAQLKKE 392 (582)
Q Consensus 317 k~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~~~~~~~~i~~ri~~l~~~ 392 (582)
++++.++.+..+|+.+||+++++ .++++.+.+.|+ |+.+++ ++++|+||..|.+|
T Consensus 307 ---~~rr~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~p------------- 365 (527)
T KOG0364|consen 307 ---AIRRLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEP------------- 365 (527)
T ss_pred ---hhhhhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCC-------------
Confidence 55788999999999999999999 699999999996 778874 68899999999887
Q ss_pred HhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhh
Q 007985 393 LAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKD 471 (582)
Q Consensus 393 l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~ 471 (582)
..|||++||+|...++|.+|.+.||+.+.++.+-++ ++||||++||..++.|.+.+.
T Consensus 366 ----------------------kaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa 423 (527)
T KOG0364|consen 366 ----------------------KACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSA 423 (527)
T ss_pred ----------------------cceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999999999998 999999999999999998766
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCcccccccCCccccHHHHHHHHH
Q 007985 472 KLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQ 547 (582)
Q Consensus 472 ~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~ 547 (582)
...+- +++.+.+++.||+.+|++|++|+|.++...+..++.. ...+|+|.++|.++||.+.|+|||..+|.+..+
T Consensus 424 ~~~GV-ekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~k 502 (527)
T KOG0364|consen 424 LMTGV-EKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGK 502 (527)
T ss_pred hccch-hccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhh
Confidence 55555 4689999999999999999999999999988888774 467899999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhccCCCC
Q 007985 548 NAASVAGMVLTTQAIVVEKPKP 569 (582)
Q Consensus 548 ~A~e~a~~lL~id~iI~~~p~~ 569 (582)
+|++.++++||+|++++.+.++
T Consensus 503 tavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 503 TAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred HHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999877543
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-65 Score=525.28 Aligned_cols=450 Identities=22% Similarity=0.300 Sum_probs=396.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCCCc
Q 007985 51 QRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGT 129 (582)
Q Consensus 51 ~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GDGT 129 (582)
+++...|+++|+.|+++++|+|||+||+||+++ +|+..+|||.+||+|+++++||+ |+||+++++.|+++.||||
T Consensus 25 e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDgt 100 (537)
T KOG0362|consen 25 EEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDGT 100 (537)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCCc
Confidence 567889999999999999999999999999999 99999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhccc----ccCCHHHHHHHHhhh-----cCCchhHHH
Q 007985 130 TTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR----PIEGRDDIKAVATIS-----AGNDDLIGT 200 (582)
Q Consensus 130 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~----~v~~~~~l~~va~ts-----~~~~~~l~~ 200 (582)
+++|+|+++||+++.++|..|++|.+|+.||+.|.+.+++.|.++-. ++.|.+ .+++++ ..+.+++++
T Consensus 101 nfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l~~ 177 (537)
T KOG0362|consen 101 NFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFLTK 177 (537)
T ss_pred eEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHHHHHH
Confidence 99999999999999999999999999999999999999999998753 333444 444443 345799999
Q ss_pred HHHHHHHHhCCCC-----cE--EEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccC-------
Q 007985 201 MIADAIDKVGPDG-----VL--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQK------- 266 (582)
Q Consensus 201 li~~ai~~v~~~g-----~I--~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~------- 266 (582)
++++|+..+.+.+ +| .+..|+++++| .++.||+|.+. +++...+-+.++|.++.|+
T Consensus 178 lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~---------~eG~v~~ak~arvAvf~cP~d~~~TE 247 (537)
T KOG0362|consen 178 LVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRD---------PEGEVKSAKDARVAVFACPFDIAQTE 247 (537)
T ss_pred HHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccc---------cCCcccccccceeEEEecCCCccccc
Confidence 9999999988763 34 44799999999 89999999985 2344456788999999998
Q ss_pred ------cCCHHHHH-----------HHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHH
Q 007985 267 ------ISAIKDII-----------PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALL 329 (582)
Q Consensus 267 ------i~~~~~i~-----------~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l 329 (582)
|++++++. ..++.+...|+++|++.+.+++.+|+++.. .++++++.+ ++.+|
T Consensus 248 tkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnk------y~ImVlqi~-----Sk~eL 316 (537)
T KOG0362|consen 248 TKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK------YKIMVLQIN-----SKFDL 316 (537)
T ss_pred CcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhcc------ccEEEEEec-----cHhhH
Confidence 56666553 456677788999999999999999998733 457888875 68999
Q ss_pred HHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHH
Q 007985 330 QDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLA 406 (582)
Q Consensus 330 ~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~ 406 (582)
.+++...||.+++ .+..+....+|+|.+|. ++++.++.|.....
T Consensus 317 rrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~---------------------------- 363 (537)
T KOG0362|consen 317 RRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST---------------------------- 363 (537)
T ss_pred HHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC----------------------------
Confidence 9999999999998 68888889999999986 56777777765321
Q ss_pred HHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHH
Q 007985 407 ERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIV 485 (582)
Q Consensus 407 ~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~ 485 (582)
.+.++|+++||+|+..+|+.||.++|+++..+...+++ ++||+|++|++|+..|.++..++++.++ ++++.|
T Consensus 364 ------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q-~Aik~f 436 (537)
T KOG0362|consen 364 ------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQ-LAIKKF 436 (537)
T ss_pred ------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcch-hHHHHH
Confidence 13579999999999999999999999999999999998 9999999999999999999999999875 899999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhcC---CCceeEEccCC-cccccccCCccccHHHHHHHHHHHHHHHHHHhchhh
Q 007985 486 QKALVAPASLIAHNAGVEGEVVVEKVKDS---EWTTGYNAMTD-KYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 561 (582)
Q Consensus 486 a~AL~~i~~~L~~NaG~d~~~vi~~l~~~---~~~~G~d~~~g-~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~ 561 (582)
++||+..|++|++|+|+++.+++.++... ....|+|..-. ...|+.+.||||-+.+|.++++.|+++|.++|++|+
T Consensus 437 a~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDq 516 (537)
T KOG0362|consen 437 AEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQ 516 (537)
T ss_pred HHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhh
Confidence 99999999999999999999999999875 34568888765 589999999999999999999999999999999999
Q ss_pred hhccCCC
Q 007985 562 IVVEKPK 568 (582)
Q Consensus 562 iI~~~p~ 568 (582)
||..+|.
T Consensus 517 iimak~a 523 (537)
T KOG0362|consen 517 IIMAKKA 523 (537)
T ss_pred eeEeccc
Confidence 9998865
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-62 Score=496.01 Aligned_cols=451 Identities=22% Similarity=0.345 Sum_probs=398.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCCCc
Q 007985 51 QRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGT 129 (582)
Q Consensus 51 ~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GDGT 129 (582)
..+...|+.+..-+.+.+++.+||+|..||+++ .|++++|+||.+.+++|+++||. +-++..++..||+..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCc
Confidence 446677888999999999999999999999999 99999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCC------chhHHHHHH
Q 007985 130 TTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGN------DDLIGTMIA 203 (582)
Q Consensus 130 Tt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~------~~~l~~li~ 203 (582)
||+|+|.+||++++..++..|+||..|..||+.|.+.++++|+..+.+++ ++.|..+++|+++. -+.+.++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-~~~L~~va~tsl~Tkv~~~la~~lt~~vv 170 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-RETLKDVARTSLRTKVHAELADVLTPIVV 170 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-HHHHHHHHHHhhcCcccHHHHhHhHHHHH
Confidence 99999999999999999999999999999999999999999997777774 78899999999875 367888889
Q ss_pred HHHHHhCC-CCcE-----EE--ecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCC------
Q 007985 204 DAIDKVGP-DGVL-----SI--ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISA------ 269 (582)
Q Consensus 204 ~ai~~v~~-~g~I-----~i--~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~------ 269 (582)
+|+..+.. ++.| .+ -...+..|+ .+++|+++|+|-.||. |++.++|++||+++.+++.
T Consensus 171 ~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Ein 242 (520)
T KOG0359|consen 171 DSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEIN 242 (520)
T ss_pred hhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccc
Confidence 99888763 3322 11 244566777 7999999999999985 7889999999999987532
Q ss_pred -------HHH-----------HHHHHHHHHhcC---CCEE-EEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhH
Q 007985 270 -------IKD-----------IIPLLEKTTQLR---APLL-IIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKA 327 (582)
Q Consensus 270 -------~~~-----------i~~~le~i~~~~---~~lv-ii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~ 327 (582)
.+| +..-++++...+ +.+| |.+++||+..|..|+++++ + ++++.++.
T Consensus 243 sgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gI------l-----aLRRAKRR 311 (520)
T KOG0359|consen 243 SGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGI------L-----ALRRAKRR 311 (520)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcch------H-----HHHHHhhh
Confidence 221 122344555443 3345 6688999999999988753 3 45788999
Q ss_pred HHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEE---EecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHH
Q 007985 328 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVT---IRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEK 404 (582)
Q Consensus 328 ~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~ 404 (582)
.|||+..+|||..+. +++++++++||+|+.|+ +++++|||+++|.+|
T Consensus 312 NmERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p------------------------- 361 (520)
T KOG0359|consen 312 NMERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP------------------------- 361 (520)
T ss_pred hHHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC-------------------------
Confidence 999999999999998 79999999999999997 589999999999987
Q ss_pred HHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHH
Q 007985 405 LAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGAD 483 (582)
Q Consensus 405 l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~ 483 (582)
+.|||+++|||++.+.+.|+.++|++++++++++++ ++||+|++|+.++.+|+...++.+++. ++|++
T Consensus 362 ----------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra-~~g~~ 430 (520)
T KOG0359|consen 362 ----------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRA-YLGVK 430 (520)
T ss_pred ----------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchh-hhhHH
Confidence 469999999999999999999999999999999998 999999999999999998887777775 69999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHhhcC--CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhh
Q 007985 484 IVQKALVAPASLIAHNAGVEGEVVVEKVKDS--EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQA 561 (582)
Q Consensus 484 ~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~--~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~ 561 (582)
+|++||..+|++|++|+|+|..+.+.+|... ...+|+|+.+|+..+....||||.+.||++.|.+++-+|+.||-+|+
T Consensus 431 afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDE 510 (520)
T KOG0359|consen 431 AFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDE 510 (520)
T ss_pred HHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999888774 33569999999999999999999999999999999999999999999
Q ss_pred hhccC
Q 007985 562 IVVEK 566 (582)
Q Consensus 562 iI~~~ 566 (582)
++...
T Consensus 511 i~rAG 515 (520)
T KOG0359|consen 511 IIRAG 515 (520)
T ss_pred HHHcc
Confidence 99653
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-60 Score=467.55 Aligned_cols=374 Identities=24% Similarity=0.306 Sum_probs=347.0
Q ss_pred Cccc-eeccc-chhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHH
Q 007985 35 YRRF-AVRAS-AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGA 111 (582)
Q Consensus 35 ~~~~-~~~~~-~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga 111 (582)
.+|| .+|.+ .+.+.+|.++.++++-+..+++.++++||||+|++|++.. .|.+.+|||| .|++ +
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----a 75 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----A 75 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----H
Confidence 4666 46644 7799999999999999999999999999999999999999 9999999999 6788 9
Q ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhh
Q 007985 112 ALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATIS 191 (582)
Q Consensus 112 ~Ll~e~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts 191 (582)
+|+...+..|+.++|||||.+++|++.+++++.+++..|+||..|..||+++...+++.|++.+.+++
T Consensus 76 kLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------------ 143 (400)
T KOG0357|consen 76 KLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------------ 143 (400)
T ss_pred HHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999998877664
Q ss_pred cCCchhHHHHHHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHH
Q 007985 192 AGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIK 271 (582)
Q Consensus 192 ~~~~~~l~~li~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~ 271 (582)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccC
Q 007985 272 DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIEN 351 (582)
Q Consensus 272 ~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~ 351 (582)
+..+++.+++.|.+|+||+|++||+|.++|..|++ |..+|+.-.++|-||+.|||+++. .+++
T Consensus 144 -f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l-----------pavrwVGGpEiEliAiaT~grIVp-----rF~e 206 (400)
T KOG0357|consen 144 -FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL-----------PAVRWVGGPEIELIAIATGGRIVP-----RFSE 206 (400)
T ss_pred -HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC-----------CceeecCCcceEEEEeecCCeeec-----cHhh
Confidence 33467888999999999999999999999999886 667788888999999999999998 6999
Q ss_pred CCcCCcceeEEEEE-----ecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCH
Q 007985 352 TSVEQLGTARKVTI-----RKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATE 426 (582)
Q Consensus 352 ~~~~~lG~~~~v~i-----~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~ 426 (582)
++++.||+++.|+. ++|+...++.|++. ...||.|||.+.
T Consensus 207 L~~~kLG~aglVrE~sfgttkdkmlviEqc~ns-----------------------------------kaVTifvRg~Nk 251 (400)
T KOG0357|consen 207 LTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS-----------------------------------KAVTIFVRGGNK 251 (400)
T ss_pred hCHhhccccceEEEEecccccceEEEEEecCCC-----------------------------------ceEEEEEecCcc
Confidence 99999999999973 48899999999885 468999999999
Q ss_pred HHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 007985 427 TELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGE 505 (582)
Q Consensus 427 ~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~ 505 (582)
..++|.||++|||||++|+.+++. +|+|||++|+.|+-++.+.+.++++.+ ++++.+|++||++||..|++|+|++|.
T Consensus 252 mii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~e-qya~rafa~ale~ipmalaensgl~pi 330 (400)
T KOG0357|consen 252 MIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIE-QYAFRAFADALESIPMALAENSGLDPI 330 (400)
T ss_pred eeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHH-HHHHHHHHHHHhhcchhhhhccCCCch
Confidence 999999999999999999999997 999999999999999999999888876 589999999999999999999999999
Q ss_pred HHHHHhhcC-----CCceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccC
Q 007985 506 VVVEKVKDS-----EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEK 566 (582)
Q Consensus 506 ~vi~~l~~~-----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~ 566 (582)
+.+++++.. ++.+|+|+.-..--||.+.+|+||+..|++.+..|++++.|+|++|+|+...
T Consensus 331 ~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~ 396 (400)
T KOG0357|consen 331 ETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG 396 (400)
T ss_pred hhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence 999988773 7899999988788899999999999999999999999999999999998654
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=9.9e-27 Score=228.98 Aligned_cols=192 Identities=34% Similarity=0.451 Sum_probs=168.2
Q ss_pred HHHHHHHhhhcC-----CchhHHHHHHHHHHHhCC------CCcEE--EecCCCccccceeeeeeEEeeecccCCCccCc
Q 007985 182 DDIKAVATISAG-----NDDLIGTMIADAIDKVGP------DGVLS--IESSSSFETTVEVEEGMEIDRGYISPQFVTNP 248 (582)
Q Consensus 182 ~~l~~va~ts~~-----~~~~l~~li~~ai~~v~~------~g~I~--i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~ 248 (582)
+++.++|+|+++ +++.+++++++|+..+++ .+.|. ..+|++..|| ++++|++|+++|.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468899999998 789999999999999987 24444 4699999999 8999999999999986
Q ss_pred ccCceeecCeeEEEeccCcCCHHHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHH
Q 007985 249 EKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKAL 328 (582)
Q Consensus 249 ~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~ 328 (582)
|+.+++||+|++++++++. ||+++++|++.++++|..++ +++|+ ++++.+
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~-----~~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVR-----RVKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEE-----eCCHHH
Confidence 5678999999999999876 88888889999999998854 46665 468899
Q ss_pred HHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEEe---cceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHH
Q 007985 329 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR---KDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKL 405 (582)
Q Consensus 329 l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l 405 (582)
|+|||.+||+++++ ++++++++.||+|++|++. ++.+++|.+|..+
T Consensus 126 l~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999999 6888888999999999864 4568888887542
Q ss_pred HHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhc
Q 007985 406 AERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEE 449 (582)
Q Consensus 406 ~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~ 449 (582)
..|||+|||+|+.+++|.||+++||++++++++++
T Consensus 175 ---------~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 ---------KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ---------CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 57999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.93 E-value=1.5e-24 Score=220.16 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=166.8
Q ss_pred CchhHHHHHHHHHHHhCCC----------CcE--EEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEE
Q 007985 194 NDDLIGTMIADAIDKVGPD----------GVL--SIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVL 261 (582)
Q Consensus 194 ~~~~l~~li~~ai~~v~~~----------g~I--~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Il 261 (582)
+.++|++++++|+..+.++ ..| .+.+|++++|| ++++|++|++.+.++ +|+.+++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 3688999999999988532 124 44699999999 999999999987774 478899999999
Q ss_pred EeccCcCCH------H-----------HHHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchh
Q 007985 262 VTDQKISAI------K-----------DIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGER 324 (582)
Q Consensus 262 l~d~~i~~~------~-----------~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~ 324 (582)
++++++... . .+...++++...|+++|+++++|++.++++|.++++ +++ +++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI------~~v-----~~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGI------TLV-----LNV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCC------EEE-----Eec
Confidence 999987321 1 245678899999999999999999999999988753 544 467
Q ss_pred hhHHHHHHHHHhCCeEeccccCCc-ccCCCcCCcceeEEEEE---ec-----ceEEEEeCCCChHHHHHHHHHHHHHHhh
Q 007985 325 RKALLQDIAIVTGAEFQAGDLGLL-IENTSVEQLGTARKVTI---RK-----DSTTIIADAASKDEIQARIAQLKKELAE 395 (582)
Q Consensus 325 ~~~~l~~ia~~tG~~iis~~~~~~-~~~~~~~~lG~~~~v~i---~~-----~~~~~~~~~~~~~~i~~ri~~l~~~l~~ 395 (582)
++.+|++||++|||++++ + .+.++++.||+|+.|++ ++ +++++|++|..+
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~---------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE---------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC----------------
Confidence 899999999999999998 5 45788889999999985 33 589999998653
Q ss_pred ccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC
Q 007985 396 TDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG 450 (582)
Q Consensus 396 ~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g 450 (582)
..|||+|||+|+..++|.||.++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 479999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.13 E-value=5.5e-10 Score=130.42 Aligned_cols=207 Identities=19% Similarity=0.311 Sum_probs=163.5
Q ss_pred chhHHHHHHHHHHHhCCC----------Cc--EEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEE
Q 007985 195 DDLIGTMIADAIDKVGPD----------GV--LSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLV 262 (582)
Q Consensus 195 ~~~l~~li~~ai~~v~~~----------g~--I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill 262 (582)
.+-+..++++|...+.++ +. |+.+.||+..|| +++.|+++.+...+ ..|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceEE
Confidence 456788889999888664 12 455799999999 99999999997665 35778999999999
Q ss_pred eccCc---------CCHHH--------HHHHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhh
Q 007985 263 TDQKI---------SAIKD--------IIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERR 325 (582)
Q Consensus 263 ~d~~i---------~~~~~--------i~~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~ 325 (582)
+.+++ .+.+. +...+.++...+++++++.++|++.|.++|..- |+.-++ +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ecc
Confidence 98764 33332 345677788889999999999999999988653 443222 557
Q ss_pred hHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEEe--------cceEEEEeCCCChHHHHHHHHHHHHHHhhcc
Q 007985 326 KALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIR--------KDSTTIIADAASKDEIQARIAQLKKELAETD 397 (582)
Q Consensus 326 ~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i~--------~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~ 397 (582)
...|+||++.||+.|++ +++.++...||+|..+++. ...++||+||..+
T Consensus 475 ~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~------------------ 531 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKP------------------ 531 (1598)
T ss_pred HHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCC------------------
Confidence 88999999999999998 6888999999999999852 3456888898765
Q ss_pred chhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHH-HhcCcccCcchhHH
Q 007985 398 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAA-IEEGIVPGGGAALV 460 (582)
Q Consensus 398 ~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~a-l~~gvVpGGGa~e~ 460 (582)
-.|||+++|.+..++.+.|+-++-++-++-+. ++.-++.--|+...
T Consensus 532 -----------------lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~ 578 (1598)
T KOG0230|consen 532 -----------------LGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASIS 578 (1598)
T ss_pred -----------------CCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccc
Confidence 25899999999999999999999988888754 45457776666443
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0014 Score=73.26 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCC-EEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHH-HHHHHHhCCeEeccccCCccc
Q 007985 273 IIPLLEKTTQLRAP-LLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALL-QDIAIVTGAEFQAGDLGLLIE 350 (582)
Q Consensus 273 i~~~le~i~~~~~~-lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l-~~ia~~tG~~iis~~~~~~~~ 350 (582)
+..+++.+.+.+.+ +++++++|+|.+.++|..+.+ . ..+++.++++ ++|+.++||++++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I------l-----t~~~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI------L-----TGRRVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc------e-----ecceecchhhHHHHHHccCceEEe-----ecc
Confidence 44667788899999 889999999999999988653 3 3466778888 7999999999999 789
Q ss_pred CCCcCCcce--eEEEEE---ecceEEEEeCCC
Q 007985 351 NTSVEQLGT--ARKVTI---RKDSTTIIADAA 377 (582)
Q Consensus 351 ~~~~~~lG~--~~~v~i---~~~~~~~~~~~~ 377 (582)
+.++..+|. |..|+. ++++++++.+|.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 999974 456667776664
No 47
>smart00574 POX domain associated with HOX domains.
Probab=43.80 E-value=74 Score=29.29 Aligned_cols=61 Identities=21% Similarity=0.156 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhh
Q 007985 398 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKD 471 (582)
Q Consensus 398 ~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~ 471 (582)
+..||..++.+.++|- ..++|.+++++.-..-++..+..- .|+|+|++-.+.+-+|+..+.
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4456667777777763 457788888877777777776664 789999988888777776543
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=38.60 E-value=14 Score=41.58 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=50.3
Q ss_pred hcCCCEEEEecCccH-----HHHHHHHHhhhcCC----ceEEEeeCCCcchhhhHHHHHHHHHhCCeEecc
Q 007985 282 QLRAPLLIIAEDVTG-----EALATLVVNKLRGI----LNVAAIKAPGFGERRKALLQDIAIVTGAEFQAG 343 (582)
Q Consensus 282 ~~~~~lvii~~~i~~-----~al~~L~~n~~~g~----~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~ 343 (582)
+...++.+..+++++ +++..+..++.+++ .++++++.| +++...++|++..++++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 334578888899988 88888888887764 488999987 99999999999999999887764
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=33.70 E-value=2.4e+02 Score=23.70 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCe
Q 007985 275 PLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAE 339 (582)
Q Consensus 275 ~~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~ 339 (582)
+.++.+.+-...+|++++|+++.....|..--.+..++++-|. .+++|..+||..
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~----------s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFK----------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC----------CHHHHHHHhCCC
Confidence 4455666667889999999998877655432112234444332 245677777765
No 50
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=30.17 E-value=1.5e+02 Score=26.42 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=31.9
Q ss_pred EEeccCcCCHHHHHHHHHHHHhcCCCEEEEecCccHHHHHHHHH
Q 007985 261 LVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVV 304 (582)
Q Consensus 261 ll~d~~i~~~~~i~~~le~i~~~~~~lvii~~~i~~~al~~L~~ 304 (582)
.++|+. .++.....++.+.+.|+|+|+-.-+.+++-+..+..
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 455654 788888889999999999999999999888777755
No 51
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=27.83 E-value=1.6e+02 Score=27.20 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC-cccCcchhHHHHHHhhHhhhh
Q 007985 399 VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG-IVPGGGAALVHLSDHVPAIKD 471 (582)
Q Consensus 399 ~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g-vVpGGGa~e~~l~~~L~~~~~ 471 (582)
..++.-++.+.++|- ..++|.+++++.-..-++..+..- .|.|.|++-.+.+-+|+..+.
T Consensus 69 ~~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 69 PAERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred hhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 345556666666663 456777777776666666666654 788999988888877776553
No 52
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=25.41 E-value=2e+02 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeE
Q 007985 276 LLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 340 (582)
Q Consensus 276 ~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~i 340 (582)
.++.+.+.+..|||++.|+++.....|..--....+++. . ....++|..++|-.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~--~--------~~t~~eLG~A~G~~v 70 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV--Y--------IDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE--E--------eCCHHHHHHHHCCcc
Confidence 355556667899999999998877766431111123332 1 123457777787653
No 53
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.08 E-value=2.3e+02 Score=28.56 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEecCcc----HHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHH------------------
Q 007985 274 IPLLEKTTQLRAPLLIIAEDVT----GEALATLVVNKLRGILNVAAIKAPGFGERRKALLQD------------------ 331 (582)
Q Consensus 274 ~~~le~i~~~~~~lvii~~~i~----~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~------------------ 331 (582)
.++|+++.+.|+|+||..+.-+ +.|+..| +..|.-+++...++.--..+.++++-
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~---~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SD 179 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMSTLEEIERAVEVL---REAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSD 179 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHH---HHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE
T ss_pred HHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHH---HhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCC
Q ss_pred ---------HHHHhCCeEeccccCCcccCCCcCC
Q 007985 332 ---------IAIVTGAEFQAGDLGLLIENTSVEQ 356 (582)
Q Consensus 332 ---------ia~~tG~~iis~~~~~~~~~~~~~~ 356 (582)
+|.+.||++|-.++.++-+...+++
T Consensus 180 Ht~g~~~~~~AvalGA~vIEKHfTldr~~~g~Dh 213 (241)
T PF03102_consen 180 HTDGIEAPIAAVALGARVIEKHFTLDRNLKGPDH 213 (241)
T ss_dssp -SSSSHHHHHHHHTT-SEEEEEB-S-TTSCSTTG
T ss_pred CCCCcHHHHHHHHcCCeEEEEEEECCCCCCCCCh
No 54
>PRK06683 hypothetical protein; Provisional
Probab=21.47 E-value=2.6e+02 Score=23.22 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeE
Q 007985 276 LLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEF 340 (582)
Q Consensus 276 ~le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~i 340 (582)
.++.+.+-...+||+++|+++.....+..--....+++.-+ ...++|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~----------~t~~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV----------ESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE----------CCHHHHHHHhCCcc
Confidence 35555666789999999999987776542111112333211 13457777888654
No 55
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.52 E-value=1.1e+02 Score=31.97 Aligned_cols=44 Identities=18% Similarity=0.542 Sum_probs=36.1
Q ss_pred ecCeeEEEeccCcCCH-----HHHHHHHHHHHh-cCCCEEEEecCccHHH
Q 007985 255 FENARVLVTDQKISAI-----KDIIPLLEKTTQ-LRAPLLIIAEDVTGEA 298 (582)
Q Consensus 255 ~~n~~Ill~d~~i~~~-----~~i~~~le~i~~-~~~~lvii~~~i~~~a 298 (582)
+..|.+|+.|.|+.+. .|++|++|.+.+ .+.|++-++-++++.+
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 4678999999997665 489999999886 5899999998877644
No 56
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=20.43 E-value=1.9e+02 Score=26.81 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhhCCCChHHHHHHHHHHH----------HHHHHHHhhcccccCCHHHHHHHHhhhc
Q 007985 136 AREIIKLGLLSVTSGANPVSLKRGIDKTV----------HGLVEELEKRARPIEGRDDIKAVATISA 192 (582)
Q Consensus 136 a~~Ll~~~~~li~~g~~p~~I~~g~~~a~----------~~~~~~L~~~s~~v~~~~~l~~va~ts~ 192 (582)
..++-+..+++-++|..|++|---++... +.+.++|++...--+-+|||+.+.+-+.
T Consensus 27 ~eeVe~~I~klaKkG~~pSqIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~iPeDly~LikKAv 93 (148)
T PTZ00072 27 SSEVEDQICKLAKKGLTPSQIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAV 93 (148)
T ss_pred HHHHHHHHHHHHHCCCCHhHhhhhhhhccCccceeeccchHHHHHHHhcCCCCCCchHHHHHHHHHH
Confidence 45677778888899999999876666443 5677888887754455688888877665
Done!