Query 007987
Match_columns 582
No_of_seqs 532 out of 1964
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05225 ketol-acid reductoiso 100.0 7.8E-90 1.7E-94 733.9 32.2 441 71-553 1-474 (487)
2 COG0059 IlvC Ketol-acid reduct 100.0 5.6E-81 1.2E-85 634.2 28.0 314 100-442 9-331 (338)
3 PRK13403 ketol-acid reductoiso 100.0 5.8E-75 1.3E-79 601.0 29.7 309 104-441 10-327 (335)
4 PRK05479 ketol-acid reductoiso 100.0 1.4E-69 3E-74 564.8 31.5 310 104-441 11-329 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 3.2E-65 6.9E-70 529.8 30.5 306 108-441 1-314 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 1.4E-40 2.9E-45 315.2 14.9 160 108-287 2-162 (165)
7 PF01450 IlvC: Acetohydroxy ac 100.0 5.5E-36 1.2E-40 280.4 7.7 140 294-441 1-145 (145)
8 COG0345 ProC Pyrroline-5-carbo 100.0 1.4E-31 3E-36 272.5 21.7 219 111-365 1-230 (266)
9 PRK12491 pyrroline-5-carboxyla 100.0 1.4E-30 3.1E-35 265.5 23.6 219 112-365 3-233 (272)
10 PRK06928 pyrroline-5-carboxyla 100.0 1.9E-27 4E-32 242.5 23.9 220 111-365 1-234 (277)
11 PTZ00431 pyrroline carboxylate 100.0 1.1E-26 2.3E-31 234.8 22.4 213 112-365 4-226 (260)
12 PRK07634 pyrroline-5-carboxyla 99.9 2.5E-25 5.3E-30 220.3 22.2 220 112-365 5-234 (245)
13 PRK07679 pyrroline-5-carboxyla 99.9 8.6E-25 1.9E-29 222.4 23.4 219 112-364 4-234 (279)
14 PLN02688 pyrroline-5-carboxyla 99.9 2.6E-24 5.7E-29 216.0 24.0 218 112-364 1-229 (266)
15 KOG3124 Pyrroline-5-carboxylat 99.9 4.3E-25 9.4E-30 221.7 16.2 218 112-365 1-231 (267)
16 PRK11880 pyrroline-5-carboxyla 99.9 1.2E-23 2.6E-28 211.4 22.9 219 111-364 2-230 (267)
17 PRK07680 late competence prote 99.9 1.9E-23 4.2E-28 211.7 22.3 218 112-365 1-231 (273)
18 PRK05225 ketol-acid reductoiso 99.9 5.9E-25 1.3E-29 236.4 9.2 152 278-441 327-484 (487)
19 TIGR00112 proC pyrroline-5-car 99.9 4.4E-22 9.5E-27 200.0 19.4 196 142-365 11-213 (245)
20 PRK06476 pyrroline-5-carboxyla 99.9 1.6E-21 3.6E-26 195.9 20.7 211 112-365 1-223 (258)
21 PRK06545 prephenate dehydrogen 99.8 1.1E-18 2.4E-23 184.4 21.1 219 112-349 1-221 (359)
22 PF01450 IlvC: Acetohydroxy ac 99.8 6.2E-20 1.4E-24 172.3 1.9 123 450-575 17-142 (145)
23 COG0287 TyrA Prephenate dehydr 99.7 3.7E-16 7.9E-21 160.9 17.4 195 112-328 4-201 (279)
24 PRK07417 arogenate dehydrogena 99.7 2.6E-15 5.6E-20 153.2 18.0 187 112-319 1-187 (279)
25 PRK08507 prephenate dehydrogen 99.7 4.6E-15 9.9E-20 150.8 19.0 194 112-333 1-202 (275)
26 PRK07502 cyclohexadienyl dehyd 99.7 5.7E-15 1.2E-19 152.3 19.9 186 112-320 7-200 (307)
27 PRK08655 prephenate dehydrogen 99.6 1.5E-14 3.2E-19 157.2 23.2 198 112-338 1-203 (437)
28 PRK14806 bifunctional cyclohex 99.6 1.5E-14 3.3E-19 165.3 21.0 208 112-349 4-226 (735)
29 PLN02256 arogenate dehydrogena 99.6 1.1E-14 2.4E-19 151.4 15.9 165 112-300 37-210 (304)
30 PRK06130 3-hydroxybutyryl-CoA 99.5 4.3E-13 9.4E-18 138.2 19.5 217 111-360 4-244 (311)
31 PRK12557 H(2)-dependent methyl 99.5 2E-12 4.3E-17 136.8 23.6 250 112-393 1-297 (342)
32 PF02153 PDH: Prephenate dehyd 99.5 1.7E-13 3.6E-18 139.0 14.4 187 126-327 1-187 (258)
33 PRK07531 bifunctional 3-hydrox 99.5 1.3E-11 2.9E-16 136.1 29.7 193 111-339 4-219 (495)
34 TIGR01724 hmd_rel H2-forming N 99.5 3.9E-12 8.4E-17 133.0 23.1 226 112-363 1-262 (341)
35 PRK08818 prephenate dehydrogen 99.5 1.9E-13 4E-18 145.9 12.9 155 112-302 5-163 (370)
36 PRK05808 3-hydroxybutyryl-CoA 99.5 2E-12 4.4E-17 131.8 19.4 153 111-287 3-177 (282)
37 PLN02712 arogenate dehydrogena 99.5 7.8E-13 1.7E-17 150.6 17.5 194 107-329 366-564 (667)
38 PRK11199 tyrA bifunctional cho 99.4 1.1E-11 2.4E-16 132.4 19.4 178 110-335 97-279 (374)
39 COG2084 MmsB 3-hydroxyisobutyr 99.4 9.3E-12 2E-16 128.8 18.1 152 112-287 1-157 (286)
40 PLN02545 3-hydroxybutyryl-CoA 99.4 1.3E-11 2.8E-16 126.7 18.7 153 111-287 4-178 (295)
41 PLN02712 arogenate dehydrogena 99.4 3.6E-12 7.8E-17 145.2 15.5 165 112-300 53-226 (667)
42 PF03807 F420_oxidored: NADP o 99.4 1.4E-12 3.1E-17 111.7 8.7 90 113-213 1-96 (96)
43 PF03446 NAD_binding_2: NAD bi 99.3 4E-12 8.6E-17 120.2 10.1 150 111-287 1-156 (163)
44 TIGR01915 npdG NADPH-dependent 99.3 1.6E-11 3.4E-16 121.4 14.6 156 112-287 1-183 (219)
45 PRK00094 gpsA NAD(P)H-dependen 99.3 3.6E-11 7.7E-16 123.6 16.4 149 111-286 1-172 (325)
46 PRK08293 3-hydroxybutyryl-CoA 99.3 2.9E-10 6.3E-15 116.6 21.2 214 111-362 3-248 (287)
47 PRK15059 tartronate semialdehy 99.3 1.1E-10 2.5E-15 120.6 18.2 194 112-335 1-202 (292)
48 TIGR00872 gnd_rel 6-phosphoglu 99.3 2.1E-10 4.7E-15 118.5 19.8 146 112-286 1-153 (298)
49 PRK13403 ketol-acid reductoiso 99.3 1.2E-11 2.5E-16 129.9 9.1 163 392-563 130-327 (335)
50 PRK09260 3-hydroxybutyryl-CoA 99.3 3.3E-10 7.2E-15 116.1 19.4 149 111-287 1-176 (288)
51 PRK15461 NADH-dependent gamma- 99.3 1.2E-10 2.7E-15 120.2 16.2 198 111-336 1-205 (296)
52 PRK06035 3-hydroxyacyl-CoA deh 99.3 1.2E-10 2.7E-15 119.4 15.9 152 111-287 3-180 (291)
53 PRK12490 6-phosphogluconate de 99.2 2.1E-10 4.5E-15 118.5 17.1 147 112-286 1-154 (299)
54 TIGR01505 tartro_sem_red 2-hyd 99.2 4.1E-10 8.9E-15 115.3 18.3 190 113-336 1-203 (291)
55 PRK14618 NAD(P)H-dependent gly 99.2 1.3E-10 2.9E-15 121.0 13.1 161 112-306 5-183 (328)
56 PRK06129 3-hydroxyacyl-CoA deh 99.2 1.3E-09 2.9E-14 112.9 20.1 195 111-337 2-219 (308)
57 PF10727 Rossmann-like: Rossma 99.2 3.4E-11 7.3E-16 111.1 7.1 114 112-237 11-127 (127)
58 TIGR01692 HIBADH 3-hydroxyisob 99.2 6E-10 1.3E-14 114.3 16.7 145 116-287 1-152 (288)
59 PRK09599 6-phosphogluconate de 99.2 1E-09 2.2E-14 113.5 17.9 147 112-286 1-154 (301)
60 PRK07530 3-hydroxybutyryl-CoA 99.2 6.4E-10 1.4E-14 114.1 16.3 152 111-287 4-178 (292)
61 PRK05479 ketol-acid reductoiso 99.2 7.5E-11 1.6E-15 124.4 8.8 112 450-562 200-328 (330)
62 PRK11559 garR tartronate semia 99.2 1.7E-09 3.6E-14 110.8 18.3 149 112-287 3-158 (296)
63 PLN02350 phosphogluconate dehy 99.1 1.1E-09 2.4E-14 121.2 16.9 152 111-286 6-167 (493)
64 PRK12439 NAD(P)H-dependent gly 99.1 4.6E-09 1E-13 110.8 19.8 204 111-349 7-233 (341)
65 COG2085 Predicted dinucleotide 99.1 1.2E-09 2.5E-14 108.6 14.0 155 111-287 1-174 (211)
66 PTZ00142 6-phosphogluconate de 99.1 2.6E-09 5.6E-14 117.6 17.0 151 111-287 1-162 (470)
67 TIGR00873 gnd 6-phosphoglucona 99.1 3.6E-09 7.8E-14 116.4 17.5 146 113-287 1-159 (467)
68 PRK07066 3-hydroxybutyryl-CoA 99.0 1.3E-08 2.8E-13 107.2 19.2 152 111-287 7-178 (321)
69 PRK08268 3-hydroxy-acyl-CoA de 99.0 2.5E-08 5.5E-13 110.8 22.1 149 110-287 6-181 (507)
70 TIGR03026 NDP-sugDHase nucleot 99.0 1.7E-08 3.6E-13 108.8 18.4 197 112-336 1-242 (411)
71 PLN02858 fructose-bisphosphate 99.0 1.2E-08 2.6E-13 124.5 18.4 197 111-337 324-532 (1378)
72 PRK14619 NAD(P)H-dependent gly 99.0 4.3E-08 9.3E-13 101.7 19.6 79 112-214 5-85 (308)
73 PTZ00345 glycerol-3-phosphate 99.0 5.7E-08 1.2E-12 104.1 20.6 214 109-349 9-252 (365)
74 PRK07819 3-hydroxybutyryl-CoA 98.9 5.6E-08 1.2E-12 100.4 18.9 152 111-287 5-181 (286)
75 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.9 3.5E-08 7.6E-13 109.6 18.4 152 111-287 5-179 (503)
76 PRK14620 NAD(P)H-dependent gly 98.9 1.7E-07 3.6E-12 97.7 20.2 168 112-312 1-189 (326)
77 PLN02858 fructose-bisphosphate 98.9 3.2E-08 7E-13 120.9 17.2 191 112-337 5-212 (1378)
78 COG0240 GpsA Glycerol-3-phosph 98.9 8.9E-08 1.9E-12 100.9 18.2 201 111-343 1-222 (329)
79 COG0111 SerA Phosphoglycerate 98.9 1.3E-08 2.9E-13 107.2 12.1 155 95-274 126-291 (324)
80 PRK07574 formate dehydrogenase 98.9 2.8E-08 6.1E-13 107.1 14.1 158 95-276 174-344 (385)
81 PRK11064 wecC UDP-N-acetyl-D-m 98.8 2E-07 4.3E-12 101.2 20.3 198 111-335 3-245 (415)
82 PF02826 2-Hacid_dh_C: D-isome 98.8 5.5E-09 1.2E-13 100.5 7.2 124 104-241 30-162 (178)
83 PRK06522 2-dehydropantoate 2-r 98.8 1.8E-07 3.9E-12 95.2 18.3 153 112-287 1-168 (304)
84 PRK13243 glyoxylate reductase; 98.8 1.3E-08 2.7E-13 107.5 10.1 136 106-268 146-290 (333)
85 KOG2380 Prephenate dehydrogena 98.8 7.9E-08 1.7E-12 101.2 15.6 164 112-300 53-226 (480)
86 PRK12921 2-dehydropantoate 2-r 98.8 1.4E-07 3E-12 96.4 17.1 96 112-215 1-106 (305)
87 TIGR03376 glycerol3P_DH glycer 98.8 1.9E-07 4.1E-12 99.2 18.6 208 113-349 1-243 (342)
88 PF01210 NAD_Gly3P_dh_N: NAD-d 98.8 1.4E-08 3E-13 95.8 9.0 95 113-214 1-106 (157)
89 PRK08410 2-hydroxyacid dehydro 98.8 2.6E-08 5.6E-13 104.2 11.0 145 106-277 141-295 (311)
90 PLN03139 formate dehydrogenase 98.8 2.6E-08 5.6E-13 107.4 11.0 158 94-275 180-350 (386)
91 COG0059 IlvC Ketol-acid reduct 98.8 1.3E-08 2.7E-13 105.8 8.1 112 450-562 201-329 (338)
92 PF02737 3HCDH_N: 3-hydroxyacy 98.8 1.3E-07 2.9E-12 91.5 14.6 146 113-287 1-173 (180)
93 COG1052 LdhA Lactate dehydroge 98.8 5.2E-08 1.1E-12 102.8 12.7 150 103-275 139-298 (324)
94 COG4007 Predicted dehydrogenas 98.8 2.9E-07 6.3E-12 94.0 17.3 226 111-363 1-263 (340)
95 TIGR00465 ilvC ketol-acid redu 98.8 1.7E-08 3.6E-13 106.1 8.8 110 450-560 186-311 (314)
96 PRK06436 glycerate dehydrogena 98.8 3.7E-08 8.1E-13 102.9 11.4 150 95-277 108-268 (303)
97 PRK08229 2-dehydropantoate 2-r 98.8 1.3E-07 2.9E-12 98.5 15.0 96 111-215 2-111 (341)
98 KOG0409 Predicted dehydrogenas 98.8 1.3E-07 2.9E-12 98.3 14.7 149 112-287 36-192 (327)
99 PRK15409 bifunctional glyoxyla 98.7 7.7E-08 1.7E-12 101.4 12.4 145 105-275 140-295 (323)
100 TIGR02437 FadB fatty oxidation 98.7 2.5E-06 5.3E-11 98.7 25.7 348 109-515 311-699 (714)
101 PLN02928 oxidoreductase family 98.7 6.7E-08 1.4E-12 102.7 11.6 159 96-276 146-322 (347)
102 PRK08605 D-lactate dehydrogena 98.7 4.3E-08 9.3E-13 103.4 9.4 117 105-237 141-267 (332)
103 PRK12480 D-lactate dehydrogena 98.7 7.8E-08 1.7E-12 101.5 11.1 116 105-237 141-265 (330)
104 TIGR01327 PGDH D-3-phosphoglyc 98.7 5.4E-08 1.2E-12 108.6 9.9 138 105-268 133-279 (525)
105 PRK06444 prephenate dehydrogen 98.7 2E-07 4.4E-12 92.0 12.3 131 112-305 1-132 (197)
106 PRK13581 D-3-phosphoglycerate 98.7 6.6E-08 1.4E-12 107.9 9.5 147 95-268 124-280 (526)
107 PRK06932 glycerate dehydrogena 98.7 1.9E-07 4.2E-12 97.9 12.3 147 106-278 143-299 (314)
108 PRK15469 ghrA bifunctional gly 98.6 8.8E-08 1.9E-12 100.5 9.5 146 96-268 123-277 (312)
109 TIGR02441 fa_ox_alpha_mit fatt 98.6 1.1E-06 2.4E-11 101.9 18.0 213 110-360 334-573 (737)
110 PRK11730 fadB multifunctional 98.6 1.6E-06 3.5E-11 100.2 18.8 347 109-509 311-694 (715)
111 PRK11790 D-3-phosphoglycerate 98.6 2.1E-07 4.6E-12 100.9 10.4 156 95-275 135-302 (409)
112 PRK06249 2-dehydropantoate 2-r 98.6 3.7E-06 8.1E-11 87.4 18.5 192 112-334 6-226 (313)
113 PRK11154 fadJ multifunctional 98.5 2.8E-06 6.1E-11 98.1 18.6 356 110-534 308-704 (708)
114 TIGR02440 FadJ fatty oxidation 98.5 1.1E-05 2.3E-10 93.3 22.8 342 110-515 303-684 (699)
115 PRK15182 Vi polysaccharide bio 98.5 2.3E-06 5E-11 93.4 16.3 197 112-336 7-242 (425)
116 COG1250 FadB 3-hydroxyacyl-CoA 98.5 5.6E-06 1.2E-10 87.0 18.1 152 111-287 3-177 (307)
117 PRK06487 glycerate dehydrogena 98.5 3.3E-07 7.2E-12 96.2 8.7 142 106-277 144-296 (317)
118 cd01065 NAD_bind_Shikimate_DH 98.5 1.3E-07 2.9E-12 87.1 5.0 100 108-214 17-118 (155)
119 TIGR02853 spore_dpaA dipicolin 98.5 5.5E-07 1.2E-11 93.5 10.1 94 106-212 147-240 (287)
120 KOG0069 Glyoxylate/hydroxypyru 98.5 5.6E-07 1.2E-11 95.3 10.0 119 105-237 157-284 (336)
121 PF00670 AdoHcyase_NAD: S-aden 98.4 4.6E-07 9.9E-12 87.2 7.5 96 105-215 18-113 (162)
122 PRK00961 H(2)-dependent methyl 98.4 1.4E-05 3E-10 82.6 18.4 199 158-389 125-335 (342)
123 PRK11861 bifunctional prephena 98.4 1.9E-06 4.1E-11 98.9 13.1 122 182-306 1-123 (673)
124 TIGR01723 hmd_TIGR 5,10-methen 98.4 1.9E-05 4.1E-10 81.7 18.5 200 158-390 123-334 (340)
125 PRK15438 erythronate-4-phospha 98.4 6.6E-07 1.4E-11 96.4 8.2 115 106-238 112-239 (378)
126 KOG0068 D-3-phosphoglycerate d 98.4 2.8E-06 6.1E-11 89.7 12.0 169 93-285 128-312 (406)
127 COG1023 Gnd Predicted 6-phosph 98.4 4.8E-06 1E-10 84.7 12.8 149 112-286 1-154 (300)
128 PRK00257 erythronate-4-phospha 98.4 7.9E-07 1.7E-11 95.9 7.7 139 106-275 112-264 (381)
129 PRK09287 6-phosphogluconate de 98.3 1.1E-05 2.5E-10 88.9 15.7 138 122-287 1-150 (459)
130 PTZ00075 Adenosylhomocysteinas 98.3 2.4E-06 5.1E-11 94.3 10.1 121 106-243 250-371 (476)
131 PRK15057 UDP-glucose 6-dehydro 98.2 1.9E-05 4.1E-10 85.4 15.0 92 112-214 1-119 (388)
132 PF14748 P5CR_dimer: Pyrroline 98.2 2.3E-06 5.1E-11 76.6 6.7 67 296-365 2-74 (107)
133 TIGR00936 ahcY adenosylhomocys 98.2 9.1E-06 2E-10 88.4 11.3 93 107-215 192-285 (406)
134 PLN02306 hydroxypyruvate reduc 98.2 5.6E-06 1.2E-10 89.5 9.3 151 106-275 161-330 (386)
135 PRK08306 dipicolinate synthase 98.1 1.2E-05 2.5E-10 83.9 9.9 94 106-212 148-241 (296)
136 PRK05476 S-adenosyl-L-homocyst 98.1 1.5E-05 3.2E-10 87.2 11.1 93 107-215 209-302 (425)
137 PRK13304 L-aspartate dehydroge 98.1 1.2E-05 2.6E-10 82.4 9.7 92 111-213 1-94 (265)
138 PLN02494 adenosylhomocysteinas 98.1 1.3E-05 2.8E-10 88.5 10.1 122 75-214 222-343 (477)
139 PLN02353 probable UDP-glucose 98.1 9.6E-05 2.1E-09 82.0 16.3 199 111-333 1-247 (473)
140 COG1893 ApbA Ketopantoate redu 98.1 0.00018 3.9E-09 75.6 17.2 165 112-306 1-181 (307)
141 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 1.4E-05 3E-10 78.0 8.2 93 112-212 1-120 (185)
142 PRK08269 3-hydroxybutyryl-CoA 98.0 0.00044 9.4E-09 72.9 19.8 206 122-361 1-244 (314)
143 PRK13302 putative L-aspartate 98.0 2.4E-05 5.1E-10 80.7 9.9 92 112-213 7-100 (271)
144 PRK14194 bifunctional 5,10-met 98.0 1.7E-05 3.7E-10 83.2 8.5 75 107-212 156-231 (301)
145 cd00401 AdoHcyase S-adenosyl-L 98.0 4.1E-05 9E-10 83.6 11.4 93 106-214 198-291 (413)
146 PRK05708 2-dehydropantoate 2-r 98.0 0.0001 2.2E-09 76.9 13.9 153 112-287 3-170 (305)
147 COG0362 Gnd 6-phosphogluconate 98.0 7.1E-05 1.5E-09 80.8 12.3 148 112-287 4-163 (473)
148 PF01408 GFO_IDH_MocA: Oxidore 98.0 5.8E-05 1.3E-09 66.7 9.7 80 113-200 2-84 (120)
149 cd05213 NAD_bind_Glutamyl_tRNA 97.9 3.3E-05 7.2E-10 80.8 9.0 96 108-212 176-273 (311)
150 COG4074 Mth H2-forming N5,N10- 97.9 0.00078 1.7E-08 68.2 17.8 200 158-389 123-333 (343)
151 PF02558 ApbA: Ketopantoate re 97.9 5.7E-05 1.2E-09 69.6 8.7 94 114-215 1-105 (151)
152 smart00859 Semialdhyde_dh Semi 97.8 8.7E-05 1.9E-09 66.7 7.8 97 113-214 1-101 (122)
153 PRK06141 ornithine cyclodeamin 97.7 6.1E-05 1.3E-09 79.0 7.2 85 112-209 126-216 (314)
154 PF01488 Shikimate_DH: Shikima 97.7 5.9E-05 1.3E-09 69.7 5.0 97 106-212 8-109 (135)
155 TIGR02371 ala_DH_arch alanine 97.6 0.00011 2.5E-09 77.4 7.7 94 111-214 128-224 (325)
156 PRK14188 bifunctional 5,10-met 97.6 0.00014 3E-09 76.3 8.2 77 107-215 155-232 (296)
157 cd01075 NAD_bind_Leu_Phe_Val_D 97.6 0.00014 3E-09 71.8 7.0 71 105-187 23-94 (200)
158 COG5495 Uncharacterized conser 97.5 0.0008 1.7E-08 68.4 11.6 210 112-354 11-228 (289)
159 PRK00045 hemA glutamyl-tRNA re 97.5 0.00014 3.1E-09 79.3 6.9 74 108-190 180-254 (423)
160 PRK00048 dihydrodipicolinate r 97.5 0.00047 1E-08 70.5 9.8 114 112-239 2-117 (257)
161 PRK14179 bifunctional 5,10-met 97.5 0.00034 7.4E-09 73.0 8.0 75 107-212 155-230 (284)
162 PRK13303 L-aspartate dehydroge 97.4 0.00093 2E-08 68.6 10.4 91 111-213 1-94 (265)
163 PF01113 DapB_N: Dihydrodipico 97.4 0.00053 1.1E-08 62.6 7.2 113 112-238 1-123 (124)
164 TIGR01035 hemA glutamyl-tRNA r 97.4 0.00032 6.9E-09 76.5 6.7 75 107-190 177-252 (417)
165 PRK07340 ornithine cyclodeamin 97.3 0.00049 1.1E-08 72.1 7.7 90 112-214 126-219 (304)
166 PRK06223 malate dehydrogenase; 97.3 0.0017 3.7E-08 67.4 11.1 69 111-186 2-78 (307)
167 COG2423 Predicted ornithine cy 97.3 0.00069 1.5E-08 72.2 8.2 95 110-214 129-227 (330)
168 PRK06407 ornithine cyclodeamin 97.3 0.00058 1.2E-08 71.6 7.2 93 111-214 117-214 (301)
169 PRK08618 ornithine cyclodeamin 97.3 0.0007 1.5E-08 71.4 7.7 91 112-214 128-223 (325)
170 PRK07589 ornithine cyclodeamin 97.3 0.0006 1.3E-08 73.0 7.3 97 110-215 128-228 (346)
171 KOG2304 3-hydroxyacyl-CoA dehy 97.2 0.0011 2.5E-08 67.3 8.5 152 111-287 11-191 (298)
172 PLN00203 glutamyl-tRNA reducta 97.2 0.0011 2.3E-08 74.6 9.2 85 108-199 264-353 (519)
173 TIGR00518 alaDH alanine dehydr 97.2 0.0011 2.5E-08 71.2 9.1 98 108-212 165-267 (370)
174 PRK06046 alanine dehydrogenase 97.2 0.00089 1.9E-08 70.7 7.4 91 112-214 130-225 (326)
175 TIGR00036 dapB dihydrodipicoli 97.2 0.0032 6.8E-08 64.9 11.2 96 111-218 1-106 (266)
176 TIGR02992 ectoine_eutC ectoine 97.2 0.00084 1.8E-08 70.9 7.0 89 112-211 130-223 (326)
177 TIGR01921 DAP-DH diaminopimela 97.1 0.0011 2.5E-08 70.4 7.9 86 112-210 4-89 (324)
178 PF01118 Semialdhyde_dh: Semia 97.1 0.0012 2.5E-08 59.8 6.8 92 113-214 1-99 (121)
179 COG0499 SAM1 S-adenosylhomocys 97.1 0.00098 2.1E-08 71.5 7.1 94 106-215 205-299 (420)
180 PRK04207 glyceraldehyde-3-phos 97.1 0.0037 7.9E-08 66.7 10.9 96 111-214 1-111 (341)
181 PRK06823 ornithine cyclodeamin 97.1 0.0012 2.6E-08 69.7 7.1 94 110-214 127-224 (315)
182 PRK13940 glutamyl-tRNA reducta 97.1 0.0009 1.9E-08 73.2 6.4 74 107-189 178-253 (414)
183 PF02423 OCD_Mu_crystall: Orni 97.1 0.00054 1.2E-08 72.0 4.5 94 112-214 129-226 (313)
184 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0012 2.5E-08 64.0 6.4 97 107-212 25-129 (194)
185 TIGR00745 apbA_panE 2-dehydrop 97.0 0.023 5.1E-07 57.6 16.0 86 121-215 1-97 (293)
186 COG0673 MviM Predicted dehydro 97.0 0.0023 4.9E-08 66.3 8.4 86 112-209 4-95 (342)
187 KOG2711 Glycerol-3-phosphate d 97.0 0.045 9.7E-07 58.7 17.9 212 112-352 22-268 (372)
188 TIGR03215 ac_ald_DH_ac acetald 97.0 0.0056 1.2E-07 64.1 11.1 91 112-213 2-96 (285)
189 TIGR01763 MalateDH_bact malate 97.0 0.0047 1E-07 64.8 10.7 67 112-187 2-78 (305)
190 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0019 4.1E-08 62.5 7.2 76 106-212 40-116 (168)
191 PRK08300 acetaldehyde dehydrog 97.0 0.0038 8.1E-08 65.9 9.7 92 112-214 5-103 (302)
192 COG0677 WecC UDP-N-acetyl-D-ma 97.0 0.0021 4.5E-08 69.9 7.8 151 112-287 10-201 (436)
193 COG0373 HemA Glutamyl-tRNA red 96.9 0.0015 3.3E-08 71.4 6.5 72 107-187 175-247 (414)
194 COG1712 Predicted dinucleotide 96.9 0.0047 1E-07 62.8 9.3 92 112-214 1-94 (255)
195 TIGR00507 aroE shikimate 5-deh 96.9 0.0014 3E-08 67.1 5.6 93 108-211 115-213 (270)
196 cd05311 NAD_bind_2_malic_enz N 96.9 0.0052 1.1E-07 62.0 9.3 93 106-211 21-127 (226)
197 PRK00258 aroE shikimate 5-dehy 96.9 0.0014 3E-08 67.5 5.4 77 107-191 120-198 (278)
198 PRK00436 argC N-acetyl-gamma-g 96.8 0.0055 1.2E-07 65.3 9.5 96 111-214 2-101 (343)
199 PRK06199 ornithine cyclodeamin 96.8 0.0021 4.7E-08 69.5 6.4 91 109-209 153-256 (379)
200 PF13380 CoA_binding_2: CoA bi 96.7 0.0074 1.6E-07 54.8 8.5 86 112-214 1-90 (116)
201 KOG1370 S-adenosylhomocysteine 96.7 0.0053 1.1E-07 64.8 8.4 137 60-215 168-304 (434)
202 cd05291 HicDH_like L-2-hydroxy 96.7 0.008 1.7E-07 62.8 9.9 67 112-188 1-78 (306)
203 PF02254 TrkA_N: TrkA-N domain 96.7 0.015 3.2E-07 51.2 10.0 94 114-214 1-99 (116)
204 PTZ00117 malate dehydrogenase; 96.7 0.011 2.4E-07 62.5 10.3 68 109-186 4-81 (319)
205 PRK12549 shikimate 5-dehydroge 96.6 0.0042 9.2E-08 64.6 6.9 75 107-190 124-204 (284)
206 PRK09310 aroDE bifunctional 3- 96.6 0.0042 9E-08 69.1 7.2 74 107-190 329-402 (477)
207 KOG2305 3-hydroxyacyl-CoA dehy 96.6 0.043 9.4E-07 56.2 13.5 204 112-341 4-238 (313)
208 PRK08291 ectoine utilization p 96.6 0.0041 8.9E-08 65.8 6.5 88 112-210 133-225 (330)
209 PRK14175 bifunctional 5,10-met 96.6 0.0058 1.2E-07 64.1 7.5 75 107-212 155-230 (286)
210 COG0569 TrkA K+ transport syst 96.6 0.012 2.5E-07 59.4 9.3 82 112-199 1-87 (225)
211 PRK09496 trkA potassium transp 96.5 0.012 2.5E-07 63.8 9.9 93 112-211 1-99 (453)
212 KOG2653 6-phosphogluconate deh 96.5 0.003 6.5E-08 67.7 5.2 93 112-212 7-105 (487)
213 PF02629 CoA_binding: CoA bind 96.5 0.0054 1.2E-07 53.5 5.9 89 112-212 4-95 (96)
214 PTZ00082 L-lactate dehydrogena 96.5 0.013 2.9E-07 62.0 9.8 69 108-186 4-82 (321)
215 cd05191 NAD_bind_amino_acid_DH 96.5 0.012 2.7E-07 50.1 7.7 66 106-211 19-85 (86)
216 PRK14189 bifunctional 5,10-met 96.5 0.0061 1.3E-07 63.9 6.9 75 107-212 155-230 (285)
217 COG1748 LYS9 Saccharopine dehy 96.5 0.0081 1.8E-07 65.4 8.0 79 111-196 1-86 (389)
218 PRK06718 precorrin-2 dehydroge 96.4 0.014 3.1E-07 57.8 8.9 85 106-199 6-91 (202)
219 cd05292 LDH_2 A subgroup of L- 96.4 0.015 3.3E-07 61.0 9.5 70 112-188 1-77 (308)
220 COG1004 Ugd Predicted UDP-gluc 96.4 0.012 2.7E-07 64.0 8.8 92 112-211 1-119 (414)
221 TIGR01850 argC N-acetyl-gamma- 96.4 0.016 3.6E-07 61.8 9.5 95 112-214 1-101 (346)
222 TIGR01809 Shik-DH-AROM shikima 96.3 0.0069 1.5E-07 62.8 6.3 77 107-190 122-202 (282)
223 PRK14192 bifunctional 5,10-met 96.3 0.01 2.3E-07 61.9 7.5 76 106-212 155-231 (283)
224 PRK13301 putative L-aspartate 96.3 0.021 4.6E-07 59.3 9.6 92 112-214 3-96 (267)
225 COG0686 Ald Alanine dehydrogen 96.3 0.0098 2.1E-07 63.1 7.1 95 112-212 169-268 (371)
226 PF00056 Ldh_1_N: lactate/mala 96.3 0.019 4.1E-07 53.7 8.4 69 112-186 1-77 (141)
227 PRK11579 putative oxidoreducta 96.3 0.017 3.7E-07 61.0 9.0 84 112-209 5-92 (346)
228 cd01339 LDH-like_MDH L-lactate 96.3 0.017 3.6E-07 60.2 8.7 64 114-186 1-74 (300)
229 PRK05678 succinyl-CoA syntheta 96.1 0.038 8.1E-07 58.1 10.1 116 112-243 9-128 (291)
230 TIGR00561 pntA NAD(P) transhyd 96.0 0.028 6.2E-07 63.3 9.6 94 112-212 165-284 (511)
231 PF13460 NAD_binding_10: NADH( 96.0 0.05 1.1E-06 51.1 9.7 66 114-188 1-70 (183)
232 PRK10206 putative oxidoreducta 96.0 0.027 5.9E-07 59.8 8.8 87 112-208 2-91 (344)
233 PRK04148 hypothetical protein; 95.9 0.065 1.4E-06 50.5 9.9 92 109-209 16-108 (134)
234 PRK00066 ldh L-lactate dehydro 95.9 0.047 1E-06 57.7 9.9 66 112-187 7-82 (315)
235 PRK05472 redox-sensing transcr 95.8 0.012 2.6E-07 58.4 5.0 81 112-199 85-167 (213)
236 TIGR02717 AcCoA-syn-alpha acet 95.8 0.04 8.6E-07 60.9 9.4 87 112-215 8-100 (447)
237 PRK10792 bifunctional 5,10-met 95.8 0.031 6.8E-07 58.6 8.0 75 107-212 156-231 (285)
238 PF05368 NmrA: NmrA-like famil 95.7 0.056 1.2E-06 53.1 9.4 69 114-188 1-74 (233)
239 PRK06719 precorrin-2 dehydroge 95.7 0.033 7.1E-07 53.2 7.4 87 101-200 5-92 (157)
240 PRK14982 acyl-ACP reductase; P 95.7 0.02 4.4E-07 61.4 6.5 94 106-212 151-246 (340)
241 COG0169 AroE Shikimate 5-dehyd 95.7 0.019 4.1E-07 60.2 6.0 96 107-211 123-225 (283)
242 PLN02819 lysine-ketoglutarate 95.7 0.021 4.6E-07 69.0 7.2 85 110-197 568-667 (1042)
243 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.04 8.7E-07 52.0 7.5 75 106-211 24-99 (140)
244 PRK09424 pntA NAD(P) transhydr 95.6 0.034 7.3E-07 62.7 8.2 96 109-212 164-285 (509)
245 cd00650 LDH_MDH_like NAD-depen 95.6 0.069 1.5E-06 54.5 9.7 65 114-186 1-78 (263)
246 PRK03659 glutathione-regulated 95.5 0.054 1.2E-06 62.0 9.6 75 112-193 401-479 (601)
247 PRK10669 putative cation:proto 95.5 0.059 1.3E-06 60.8 9.5 74 112-192 418-495 (558)
248 PF13241 NAD_binding_7: Putati 95.5 0.038 8.3E-07 48.8 6.4 75 107-196 4-78 (103)
249 cd05297 GH4_alpha_glucosidase_ 95.4 0.022 4.8E-07 62.4 5.8 82 112-196 1-92 (423)
250 COG2344 AT-rich DNA-binding pr 95.4 0.048 1E-06 54.3 7.4 105 112-236 85-194 (211)
251 PRK09496 trkA potassium transp 95.4 0.11 2.3E-06 56.4 11.0 93 112-211 232-330 (453)
252 PTZ00187 succinyl-CoA syntheta 95.4 0.068 1.5E-06 56.9 9.1 115 112-243 30-152 (317)
253 cd01079 NAD_bind_m-THF_DH NAD 95.4 0.039 8.5E-07 55.1 6.8 94 106-213 58-157 (197)
254 TIGR01019 sucCoAalpha succinyl 95.3 0.068 1.5E-06 56.1 8.6 115 112-243 7-126 (286)
255 TIGR02356 adenyl_thiF thiazole 95.2 0.091 2E-06 51.9 8.9 88 105-199 16-132 (202)
256 TIGR01546 GAPDH-II_archae glyc 95.1 0.096 2.1E-06 56.2 9.1 75 114-193 1-90 (333)
257 PF02882 THF_DHG_CYH_C: Tetrah 95.1 0.097 2.1E-06 50.6 8.3 75 107-212 33-108 (160)
258 TIGR02354 thiF_fam2 thiamine b 95.1 0.076 1.7E-06 52.7 7.7 103 104-214 15-146 (200)
259 PRK00683 murD UDP-N-acetylmura 95.1 0.068 1.5E-06 58.1 8.0 75 112-197 4-78 (418)
260 cd05293 LDH_1 A subgroup of L- 95.0 0.15 3.2E-06 54.0 10.1 68 112-186 4-79 (312)
261 PRK03562 glutathione-regulated 94.9 0.11 2.3E-06 60.0 9.5 75 112-193 401-479 (621)
262 TIGR01470 cysG_Nterm siroheme 94.9 0.19 4E-06 50.1 9.9 82 107-197 6-89 (205)
263 PRK14191 bifunctional 5,10-met 94.9 0.066 1.4E-06 56.3 7.0 75 107-212 154-229 (285)
264 cd05211 NAD_bind_Glu_Leu_Phe_V 94.9 0.074 1.6E-06 53.5 7.1 39 106-151 19-57 (217)
265 PRK14178 bifunctional 5,10-met 94.9 0.08 1.7E-06 55.5 7.5 75 107-212 149-224 (279)
266 PF03435 Saccharop_dh: Sacchar 94.8 0.071 1.5E-06 57.0 7.2 90 114-212 1-98 (386)
267 PRK05442 malate dehydrogenase; 94.8 0.12 2.7E-06 55.0 8.9 67 111-187 4-89 (326)
268 PRK12548 shikimate 5-dehydroge 94.8 0.068 1.5E-06 55.6 6.8 77 108-191 124-212 (289)
269 PRK14176 bifunctional 5,10-met 94.6 0.12 2.5E-06 54.5 8.1 75 107-212 161-236 (287)
270 PRK12749 quinate/shikimate deh 94.6 0.094 2E-06 54.9 7.4 78 107-191 121-209 (288)
271 cd01338 MDH_choloroplast_like 94.5 0.12 2.5E-06 55.1 8.0 66 112-187 3-87 (322)
272 PF01262 AlaDh_PNT_C: Alanine 94.5 0.063 1.4E-06 51.3 5.4 100 105-212 15-139 (168)
273 PLN02602 lactate dehydrogenase 94.5 0.27 5.9E-06 53.0 10.6 67 112-186 38-113 (350)
274 cd05290 LDH_3 A subgroup of L- 94.5 0.2 4.3E-06 53.0 9.5 68 113-187 1-77 (307)
275 cd05294 LDH-like_MDH_nadp A la 94.3 0.19 4.2E-06 52.9 9.1 67 112-187 1-81 (309)
276 PF03720 UDPG_MGDP_dh_C: UDP-g 94.2 0.16 3.5E-06 45.1 7.0 84 121-214 17-103 (106)
277 PRK06270 homoserine dehydrogen 94.2 0.16 3.5E-06 54.2 8.3 100 112-211 3-124 (341)
278 PRK00421 murC UDP-N-acetylmura 94.2 0.13 2.9E-06 56.4 7.8 70 106-185 3-73 (461)
279 cd01076 NAD_bind_1_Glu_DH NAD( 94.1 0.098 2.1E-06 53.0 6.1 32 106-144 27-58 (227)
280 TIGR01761 thiaz-red thiazoliny 94.0 0.2 4.2E-06 53.9 8.4 86 112-209 4-94 (343)
281 TIGR01759 MalateDH-SF1 malate 94.0 0.4 8.6E-06 51.1 10.5 70 112-187 4-88 (323)
282 PRK14183 bifunctional 5,10-met 93.9 0.17 3.6E-06 53.2 7.5 75 107-212 154-229 (281)
283 cd01336 MDH_cytoplasmic_cytoso 93.9 0.2 4.4E-06 53.2 8.2 73 112-186 3-86 (325)
284 cd00300 LDH_like L-lactate deh 93.9 0.22 4.8E-06 52.1 8.4 67 114-187 1-75 (300)
285 PTZ00325 malate dehydrogenase; 93.8 0.11 2.3E-06 55.4 6.0 76 105-187 3-85 (321)
286 PRK14186 bifunctional 5,10-met 93.8 0.18 4E-06 53.3 7.6 75 107-212 155-230 (297)
287 PLN00112 malate dehydrogenase 93.8 0.6 1.3E-05 52.0 11.8 75 112-187 101-185 (444)
288 PRK12475 thiamine/molybdopteri 93.8 0.3 6.5E-06 52.3 9.3 90 104-200 18-138 (338)
289 PRK14173 bifunctional 5,10-met 93.8 0.19 4.1E-06 52.9 7.6 75 107-212 152-227 (287)
290 PLN02516 methylenetetrahydrofo 93.6 0.19 4.1E-06 53.2 7.4 75 107-212 164-239 (299)
291 COG1064 AdhP Zn-dependent alco 93.6 0.26 5.7E-06 53.0 8.5 89 109-209 166-256 (339)
292 TIGR01745 asd_gamma aspartate- 93.6 0.3 6.6E-06 53.1 9.0 169 112-324 1-179 (366)
293 PRK14172 bifunctional 5,10-met 93.6 0.22 4.7E-06 52.3 7.6 74 107-211 155-229 (278)
294 PRK14169 bifunctional 5,10-met 93.5 0.22 4.9E-06 52.3 7.6 75 107-212 153-228 (282)
295 PRK14177 bifunctional 5,10-met 93.5 0.23 5E-06 52.2 7.7 75 107-212 156-231 (284)
296 PRK00676 hemA glutamyl-tRNA re 93.5 0.2 4.4E-06 53.9 7.4 64 106-186 170-234 (338)
297 PRK14170 bifunctional 5,10-met 93.5 0.23 4.9E-06 52.3 7.5 75 107-212 154-229 (284)
298 PRK14027 quinate/shikimate deh 93.4 0.15 3.2E-06 53.4 6.0 77 107-190 124-206 (283)
299 PRK14190 bifunctional 5,10-met 93.3 0.24 5.2E-06 52.1 7.5 75 107-212 155-230 (284)
300 PRK00141 murD UDP-N-acetylmura 93.3 0.19 4.1E-06 55.7 7.1 70 106-185 11-81 (473)
301 PRK01710 murD UDP-N-acetylmura 93.3 0.18 3.9E-06 55.5 6.8 71 106-185 10-84 (458)
302 PF00185 OTCace: Aspartate/orn 93.2 0.66 1.4E-05 44.3 9.7 69 109-188 1-83 (158)
303 cd00757 ThiF_MoeB_HesA_family 93.2 0.25 5.4E-06 49.6 7.1 28 105-133 16-43 (228)
304 PF00899 ThiF: ThiF family; I 93.2 0.23 5E-06 45.5 6.3 31 112-148 3-34 (135)
305 PRK14106 murD UDP-N-acetylmura 93.1 0.24 5.2E-06 53.9 7.5 72 108-188 3-78 (450)
306 KOG2741 Dimeric dihydrodiol de 93.1 0.3 6.5E-06 52.6 7.9 85 112-200 7-94 (351)
307 cd01492 Aos1_SUMO Ubiquitin ac 93.1 0.41 8.8E-06 47.3 8.3 37 104-147 15-52 (197)
308 cd08230 glucose_DH Glucose deh 93.0 0.8 1.7E-05 48.0 11.0 93 109-211 172-268 (355)
309 cd01485 E1-1_like Ubiquitin ac 93.0 0.45 9.8E-06 47.0 8.5 36 105-147 14-50 (198)
310 PRK14180 bifunctional 5,10-met 93.0 0.3 6.4E-06 51.4 7.5 75 107-212 155-230 (282)
311 TIGR01758 MDH_euk_cyt malate d 93.0 0.3 6.4E-06 52.0 7.6 67 113-187 1-84 (324)
312 PRK07688 thiamine/molybdopteri 93.0 0.55 1.2E-05 50.3 9.7 89 104-199 18-137 (339)
313 PRK14171 bifunctional 5,10-met 92.9 0.3 6.6E-06 51.5 7.5 75 107-212 156-231 (288)
314 COG0190 FolD 5,10-methylene-te 92.9 0.28 6.1E-06 51.5 7.2 76 106-212 152-228 (283)
315 cd01337 MDH_glyoxysomal_mitoch 92.9 0.69 1.5E-05 49.1 10.1 69 112-187 1-77 (310)
316 PRK06349 homoserine dehydrogen 92.8 0.28 6.1E-06 53.9 7.5 92 112-210 4-102 (426)
317 PRK01438 murD UDP-N-acetylmura 92.8 0.32 6.9E-06 53.6 7.9 69 108-186 14-86 (480)
318 PRK14166 bifunctional 5,10-met 92.8 0.32 7E-06 51.1 7.5 75 107-212 154-229 (282)
319 PRK14182 bifunctional 5,10-met 92.8 0.3 6.4E-06 51.4 7.2 75 107-212 154-229 (282)
320 COG1063 Tdh Threonine dehydrog 92.8 0.52 1.1E-05 50.3 9.2 91 112-211 170-268 (350)
321 PRK14187 bifunctional 5,10-met 92.7 0.33 7.2E-06 51.3 7.5 74 107-211 157-231 (294)
322 PF10728 DUF2520: Domain of un 92.7 0.7 1.5E-05 43.2 8.8 70 263-338 4-75 (132)
323 PLN02520 bifunctional 3-dehydr 92.6 0.24 5.1E-06 56.1 6.6 75 108-191 377-452 (529)
324 PLN02353 probable UDP-glucose 92.6 0.69 1.5E-05 51.9 10.2 100 107-214 321-449 (473)
325 PLN02968 Probable N-acetyl-gam 92.6 0.34 7.3E-06 52.8 7.5 93 112-214 39-136 (381)
326 TIGR01772 MDH_euk_gproteo mala 92.5 0.54 1.2E-05 49.9 8.8 68 113-187 1-76 (312)
327 PRK15076 alpha-galactosidase; 92.5 0.24 5.3E-06 54.7 6.4 74 111-189 1-86 (431)
328 PRK05562 precorrin-2 dehydroge 92.5 0.85 1.8E-05 46.5 9.8 98 92-199 8-106 (223)
329 PRK14193 bifunctional 5,10-met 92.5 0.37 8.1E-06 50.7 7.4 75 107-212 155-232 (284)
330 cd00704 MDH Malate dehydrogena 92.4 0.39 8.6E-06 51.1 7.7 64 113-186 2-84 (323)
331 PRK14174 bifunctional 5,10-met 92.4 0.35 7.6E-06 51.1 7.2 79 107-212 156-235 (295)
332 PLN02616 tetrahydrofolate dehy 92.3 0.35 7.5E-06 52.5 7.1 75 107-212 228-303 (364)
333 PLN02897 tetrahydrofolate dehy 92.2 0.37 8.1E-06 51.9 7.2 75 107-212 211-286 (345)
334 PRK05690 molybdopterin biosynt 92.2 0.57 1.2E-05 47.8 8.3 29 104-133 26-54 (245)
335 TIGR01851 argC_other N-acetyl- 92.2 0.69 1.5E-05 49.3 9.1 130 112-286 2-132 (310)
336 cd01483 E1_enzyme_family Super 92.2 1.1 2.3E-05 41.3 9.3 29 113-147 1-30 (143)
337 TIGR03366 HpnZ_proposed putati 92.2 0.95 2.1E-05 46.0 9.8 89 109-211 120-217 (280)
338 PRK01390 murD UDP-N-acetylmura 92.2 0.35 7.6E-06 53.1 7.2 66 107-184 6-71 (460)
339 PRK08644 thiamine biosynthesis 92.1 0.6 1.3E-05 46.7 8.1 38 104-148 22-60 (212)
340 COG1648 CysG Siroheme synthase 92.0 0.89 1.9E-05 45.8 9.2 81 106-195 8-89 (210)
341 PRK11863 N-acetyl-gamma-glutam 91.9 0.78 1.7E-05 48.9 9.2 80 112-214 3-83 (313)
342 PRK03369 murD UDP-N-acetylmura 91.9 0.51 1.1E-05 52.7 8.2 71 106-186 8-78 (488)
343 TIGR01202 bchC 2-desacetyl-2-h 91.9 0.78 1.7E-05 47.4 9.0 87 109-211 144-230 (308)
344 PRK12550 shikimate 5-dehydroge 91.9 0.38 8.2E-06 50.1 6.6 67 112-190 123-190 (272)
345 PRK08328 hypothetical protein; 91.8 0.85 1.8E-05 46.1 9.0 28 105-133 22-49 (231)
346 PRK05671 aspartate-semialdehyd 91.8 0.54 1.2E-05 50.4 7.8 87 112-214 5-99 (336)
347 PRK06728 aspartate-semialdehyd 91.7 3.3 7.1E-05 44.9 13.6 165 112-324 6-177 (347)
348 PRK02318 mannitol-1-phosphate 91.7 0.33 7.1E-06 52.5 6.2 84 112-202 1-104 (381)
349 PRK08762 molybdopterin biosynt 91.7 0.91 2E-05 49.0 9.5 88 105-199 130-246 (376)
350 PRK05086 malate dehydrogenase; 91.6 1.3 2.9E-05 46.8 10.4 71 112-187 1-78 (312)
351 PRK06598 aspartate-semialdehyd 91.6 2.4 5.2E-05 46.3 12.6 169 111-323 1-179 (369)
352 PRK14185 bifunctional 5,10-met 91.6 0.54 1.2E-05 49.7 7.4 75 107-212 154-233 (293)
353 TIGR00670 asp_carb_tr aspartat 91.5 0.53 1.2E-05 49.8 7.4 70 107-185 147-223 (301)
354 cd01487 E1_ThiF_like E1_ThiF_l 91.5 0.91 2E-05 44.0 8.4 30 113-148 1-31 (174)
355 PRK02472 murD UDP-N-acetylmura 91.4 0.59 1.3E-05 50.8 7.9 70 108-186 3-76 (447)
356 PRK09880 L-idonate 5-dehydroge 91.4 1.3 2.8E-05 46.3 10.1 92 109-211 169-265 (343)
357 PLN02383 aspartate semialdehyd 91.4 0.62 1.4E-05 50.1 7.9 88 112-214 8-102 (344)
358 PLN00106 malate dehydrogenase 91.3 0.47 1E-05 50.7 6.8 70 112-187 19-95 (323)
359 PLN00125 Succinyl-CoA ligase [ 91.2 0.99 2.1E-05 47.9 9.0 116 112-243 13-133 (300)
360 PF03447 NAD_binding_3: Homose 91.0 1.8 3.8E-05 38.6 9.2 82 118-209 1-87 (117)
361 COG0289 DapB Dihydrodipicolina 91.0 1.1 2.4E-05 46.8 8.8 161 111-285 2-179 (266)
362 TIGR02822 adh_fam_2 zinc-bindi 90.9 1.3 2.9E-05 46.3 9.6 88 109-211 165-253 (329)
363 KOG0022 Alcohol dehydrogenase, 90.9 0.38 8.3E-06 51.5 5.5 51 107-164 190-240 (375)
364 PRK02006 murD UDP-N-acetylmura 90.9 0.64 1.4E-05 51.7 7.6 71 108-188 5-81 (498)
365 TIGR02355 moeB molybdopterin s 90.8 0.83 1.8E-05 46.6 7.8 89 104-199 18-135 (240)
366 TIGR00978 asd_EA aspartate-sem 90.8 0.95 2.1E-05 48.3 8.5 94 112-214 1-106 (341)
367 PRK10537 voltage-gated potassi 90.8 1.2 2.7E-05 48.7 9.5 91 112-211 241-336 (393)
368 PRK14874 aspartate-semialdehyd 90.7 0.8 1.7E-05 48.8 7.8 88 112-214 2-96 (334)
369 COG0078 ArgF Ornithine carbamo 90.7 0.81 1.8E-05 48.6 7.6 85 108-203 151-248 (310)
370 COG2910 Putative NADH-flavin r 90.6 0.86 1.9E-05 45.7 7.3 95 112-215 1-107 (211)
371 PF04016 DUF364: Domain of unk 90.5 0.38 8.2E-06 45.6 4.7 89 105-211 6-94 (147)
372 PRK08306 dipicolinate synthase 90.5 1 2.2E-05 47.3 8.2 109 110-237 2-122 (296)
373 PF03059 NAS: Nicotianamine sy 90.3 1.2 2.5E-05 46.9 8.4 99 112-215 122-235 (276)
374 COG0771 MurD UDP-N-acetylmuram 90.3 0.62 1.4E-05 51.9 6.8 70 107-185 4-76 (448)
375 PRK05597 molybdopterin biosynt 90.3 1.1 2.4E-05 48.2 8.6 89 104-199 22-139 (355)
376 PRK04284 ornithine carbamoyltr 90.3 0.86 1.9E-05 48.9 7.6 70 107-185 152-231 (332)
377 PRK14804 ornithine carbamoyltr 90.2 1.1 2.3E-05 47.7 8.2 69 107-186 150-226 (311)
378 PRK14184 bifunctional 5,10-met 90.2 0.85 1.8E-05 48.1 7.3 79 107-212 154-233 (286)
379 PRK05600 thiamine biosynthesis 90.1 0.82 1.8E-05 49.6 7.4 90 104-200 35-153 (370)
380 PRK12809 putative oxidoreducta 90.1 1.2 2.7E-05 51.3 9.2 34 109-149 309-342 (639)
381 CHL00194 ycf39 Ycf39; Provisio 90.1 1.1 2.3E-05 46.6 7.9 69 112-187 1-73 (317)
382 PRK08040 putative semialdehyde 90.0 0.56 1.2E-05 50.4 6.0 168 112-324 5-177 (336)
383 TIGR01318 gltD_gamma_fam gluta 90.0 1.3 2.7E-05 49.2 8.9 34 109-149 140-173 (467)
384 TIGR01757 Malate-DH_plant mala 90.0 1.7 3.7E-05 47.7 9.7 22 112-133 45-67 (387)
385 COG0039 Mdh Malate/lactate deh 90.0 1.4 3.1E-05 47.0 8.9 71 112-186 1-77 (313)
386 PLN02586 probable cinnamyl alc 90.0 2 4.3E-05 45.6 10.1 91 109-209 183-275 (360)
387 TIGR03026 NDP-sugDHase nucleot 89.9 1.3 2.9E-05 48.1 8.8 88 107-210 310-408 (411)
388 PRK00779 ornithine carbamoyltr 89.7 2.3 5E-05 45.0 10.2 70 107-185 149-224 (304)
389 cd08237 ribitol-5-phosphate_DH 89.7 2.1 4.5E-05 45.0 9.8 88 109-210 163-254 (341)
390 COG0136 Asd Aspartate-semialde 89.6 5.1 0.00011 43.3 12.7 149 112-294 2-159 (334)
391 PRK12562 ornithine carbamoyltr 89.5 1.1 2.4E-05 48.2 7.6 71 107-186 153-233 (334)
392 PRK14181 bifunctional 5,10-met 89.5 1.1 2.4E-05 47.3 7.5 79 107-212 150-229 (287)
393 PRK12771 putative glutamate sy 89.4 1.1 2.4E-05 50.8 8.0 75 107-188 134-232 (564)
394 PRK08664 aspartate-semialdehyd 89.3 1.2 2.6E-05 47.7 7.8 94 112-214 4-109 (349)
395 COG0002 ArgC Acetylglutamate s 89.0 2.2 4.9E-05 46.1 9.5 95 111-213 2-102 (349)
396 PRK01713 ornithine carbamoyltr 89.0 1.2 2.6E-05 47.8 7.5 71 107-186 153-233 (334)
397 TIGR01771 L-LDH-NAD L-lactate 88.7 1.6 3.5E-05 45.9 8.2 66 116-187 1-73 (299)
398 PRK02102 ornithine carbamoyltr 88.5 1.4 3E-05 47.4 7.6 71 107-186 152-232 (331)
399 PRK12769 putative oxidoreducta 88.4 1.5 3.3E-05 50.6 8.4 34 109-149 326-359 (654)
400 PRK14168 bifunctional 5,10-met 88.1 1.4 3E-05 46.8 7.1 79 107-212 158-237 (297)
401 PRK04308 murD UDP-N-acetylmura 88.0 1.6 3.5E-05 47.7 8.0 68 108-185 3-74 (445)
402 PRK07878 molybdopterin biosynt 87.9 1.9 4.1E-05 47.0 8.3 28 105-133 37-64 (392)
403 PRK04690 murD UDP-N-acetylmura 87.8 1.5 3.3E-05 48.7 7.6 68 108-185 6-76 (468)
404 PF10100 DUF2338: Uncharacteri 87.8 2.7 5.9E-05 46.4 9.3 173 111-299 1-208 (429)
405 PRK08223 hypothetical protein; 87.7 2.6 5.7E-05 44.5 8.9 28 105-133 22-49 (287)
406 PRK03515 ornithine carbamoyltr 87.5 1.9 4.1E-05 46.4 7.9 70 107-185 153-232 (336)
407 PLN03075 nicotianamine synthas 87.5 3.1 6.8E-05 44.1 9.4 98 109-214 123-237 (296)
408 TIGR03693 ocin_ThiF_like putat 87.5 2.3 5E-05 49.3 8.8 99 109-214 128-242 (637)
409 PRK14573 bifunctional D-alanyl 87.4 1.5 3.2E-05 52.1 7.6 66 111-185 4-70 (809)
410 cd01486 Apg7 Apg7 is an E1-lik 87.4 1.5 3.3E-05 46.7 7.0 21 113-133 1-21 (307)
411 PLN00141 Tic62-NAD(P)-related 87.3 1.9 4.1E-05 43.0 7.3 38 106-150 13-51 (251)
412 PRK02255 putrescine carbamoylt 87.3 3 6.5E-05 45.0 9.2 71 107-186 151-230 (338)
413 COG0026 PurK Phosphoribosylami 87.2 0.93 2E-05 49.4 5.3 75 111-194 1-81 (375)
414 PRK07200 aspartate/ornithine c 87.2 1.9 4.2E-05 47.4 7.9 71 107-186 184-270 (395)
415 TIGR01087 murD UDP-N-acetylmur 87.0 1.5 3.2E-05 47.8 6.8 64 113-185 1-69 (433)
416 PRK06392 homoserine dehydrogen 86.9 1.6 3.5E-05 46.7 6.9 22 112-133 1-22 (326)
417 TIGR03570 NeuD_NnaD sugar O-ac 86.9 1.5 3.3E-05 41.5 6.1 76 113-199 1-80 (201)
418 PLN02342 ornithine carbamoyltr 86.9 2.1 4.5E-05 46.4 7.7 69 107-186 191-267 (348)
419 PRK07411 hypothetical protein; 86.8 1.8 4E-05 47.2 7.4 89 104-199 32-149 (390)
420 PRK06463 fabG 3-ketoacyl-(acyl 86.7 3.7 8.1E-05 40.6 9.0 83 108-214 5-89 (255)
421 PRK06019 phosphoribosylaminoim 86.6 1.3 2.8E-05 47.6 6.0 65 111-184 2-69 (372)
422 TIGR02819 fdhA_non_GSH formald 86.4 4.8 0.00011 43.6 10.3 95 109-210 185-297 (393)
423 PRK03803 murD UDP-N-acetylmura 86.1 2 4.2E-05 47.1 7.2 65 112-184 7-74 (448)
424 PLN02178 cinnamyl-alcohol dehy 86.1 4.9 0.00011 43.2 10.1 89 109-209 178-270 (375)
425 TIGR03649 ergot_EASG ergot alk 86.1 2.7 5.9E-05 42.5 7.8 66 113-188 1-77 (285)
426 cd01491 Ube1_repeat1 Ubiquitin 85.9 2.8 6.1E-05 44.2 8.0 36 105-147 14-50 (286)
427 TIGR01296 asd_B aspartate-semi 85.9 1.7 3.6E-05 46.7 6.4 162 113-321 1-169 (339)
428 PRK00856 pyrB aspartate carbam 85.9 3.6 7.8E-05 43.7 8.8 65 107-185 153-220 (305)
429 PRK07806 short chain dehydroge 85.8 10 0.00023 37.0 11.6 36 108-150 4-40 (248)
430 PRK06057 short chain dehydroge 85.7 4 8.6E-05 40.4 8.6 36 107-149 4-40 (255)
431 COG1004 Ugd Predicted UDP-gluc 85.7 2.1 4.6E-05 47.1 7.1 74 108-195 308-393 (414)
432 PLN02527 aspartate carbamoyltr 85.5 2.3 5.1E-05 45.1 7.2 71 107-185 148-225 (306)
433 TIGR01532 E4PD_g-proteo D-eryt 85.5 3.1 6.6E-05 44.6 8.1 94 113-212 1-120 (325)
434 PRK06182 short chain dehydroge 85.3 5.2 0.00011 40.1 9.3 71 109-187 2-83 (273)
435 PRK10637 cysG siroheme synthas 85.3 4 8.6E-05 45.4 9.2 86 101-196 4-90 (457)
436 PRK00517 prmA ribosomal protei 85.1 3.4 7.3E-05 42.0 7.9 90 109-211 119-212 (250)
437 cd08255 2-desacetyl-2-hydroxye 85.1 6.5 0.00014 39.2 9.9 91 108-211 96-189 (277)
438 PRK12814 putative NADPH-depend 85.1 3.8 8.3E-05 47.5 9.3 73 108-187 191-287 (652)
439 TIGR01082 murC UDP-N-acetylmur 85.0 2.2 4.8E-05 46.8 7.0 64 113-185 1-65 (448)
440 PRK12810 gltD glutamate syntha 85.0 3 6.6E-05 46.2 8.1 36 107-149 140-175 (471)
441 PRK14167 bifunctional 5,10-met 85.0 2.6 5.6E-05 44.8 7.2 79 107-212 154-233 (297)
442 PLN02477 glutamate dehydrogena 85.0 1.6 3.5E-05 48.2 5.9 32 106-144 202-233 (410)
443 PRK12409 D-amino acid dehydrog 84.9 1.2 2.7E-05 47.5 5.0 34 111-150 1-34 (410)
444 TIGR02469 CbiT precorrin-6Y C5 84.9 9.1 0.0002 33.1 9.6 94 109-210 19-120 (124)
445 PRK07825 short chain dehydroge 84.8 4.2 9E-05 40.7 8.4 86 108-215 3-89 (273)
446 KOG1495 Lactate dehydrogenase 84.8 8.2 0.00018 40.9 10.5 103 106-215 16-141 (332)
447 PRK05786 fabG 3-ketoacyl-(acyl 84.7 6.9 0.00015 38.0 9.6 37 108-151 3-40 (238)
448 TIGR03201 dearomat_had 6-hydro 84.7 4.7 0.0001 42.3 9.0 47 109-163 166-212 (349)
449 cd05188 MDR Medium chain reduc 84.5 10 0.00022 36.8 10.8 93 108-211 133-231 (271)
450 COG2227 UbiG 2-polyprenyl-3-me 84.4 6 0.00013 41.0 9.3 91 108-211 58-160 (243)
451 PRK05717 oxidoreductase; Valid 84.3 4.7 0.0001 39.9 8.4 37 106-149 6-43 (255)
452 PRK03806 murD UDP-N-acetylmura 84.2 3.1 6.6E-05 45.4 7.6 69 108-185 4-72 (438)
453 PRK08192 aspartate carbamoyltr 84.2 3.3 7.2E-05 44.6 7.7 71 107-185 156-233 (338)
454 COG1062 AdhC Zn-dependent alco 84.1 5.6 0.00012 43.2 9.3 72 108-190 184-266 (366)
455 TIGR03316 ygeW probable carbam 84.1 3.3 7.2E-05 45.0 7.7 71 107-186 167-253 (357)
456 cd08239 THR_DH_like L-threonin 84.0 7.1 0.00015 40.4 9.9 90 109-209 163-259 (339)
457 PRK13984 putative oxidoreducta 83.9 3.4 7.5E-05 47.1 8.2 34 109-149 282-315 (604)
458 TIGR00658 orni_carb_tr ornithi 83.9 3.3 7.2E-05 43.8 7.5 70 108-186 146-224 (304)
459 PRK11891 aspartate carbamoyltr 83.8 3.5 7.5E-05 45.9 7.8 72 107-186 238-316 (429)
460 PRK09242 tropinone reductase; 83.8 3.7 8E-05 40.6 7.4 88 108-214 7-98 (257)
461 cd08281 liver_ADH_like1 Zinc-d 83.6 7.8 0.00017 41.0 10.2 90 109-209 191-287 (371)
462 TIGR03451 mycoS_dep_FDH mycoth 83.4 9.2 0.0002 40.2 10.6 93 109-211 176-275 (358)
463 PLN02514 cinnamyl-alcohol dehy 83.3 7.4 0.00016 41.1 9.9 92 109-210 180-273 (357)
464 PRK10309 galactitol-1-phosphat 83.3 6.4 0.00014 41.0 9.3 47 109-162 160-206 (347)
465 TIGR01317 GOGAT_sm_gam glutama 83.1 4.8 0.0001 45.0 8.7 35 108-149 141-175 (485)
466 PRK08265 short chain dehydroge 83.0 6.1 0.00013 39.5 8.7 36 108-150 4-40 (261)
467 KOG3007 Mu-crystallin [Amino a 83.0 2 4.3E-05 45.3 5.2 97 113-217 140-242 (333)
468 PRK15182 Vi polysaccharide bio 82.9 6.9 0.00015 43.3 9.7 95 106-214 310-415 (425)
469 PLN02214 cinnamoyl-CoA reducta 82.9 5.7 0.00012 41.8 8.8 76 106-188 6-91 (342)
470 PLN03209 translocon at the inn 82.6 2.2 4.8E-05 49.1 5.9 40 106-152 76-116 (576)
471 cd08298 CAD2 Cinnamyl alcohol 82.6 6.7 0.00014 40.1 8.9 87 109-210 167-254 (329)
472 PRK08374 homoserine dehydrogen 82.4 6.4 0.00014 42.2 9.0 95 112-209 3-119 (336)
473 PRK07831 short chain dehydroge 82.4 5.3 0.00012 39.7 8.0 39 104-149 11-51 (262)
474 PRK07060 short chain dehydroge 82.4 4.9 0.00011 39.1 7.5 36 107-149 6-42 (245)
475 PRK09414 glutamate dehydrogena 82.2 3.3 7E-05 46.4 6.9 34 106-146 228-261 (445)
476 PLN02740 Alcohol dehydrogenase 82.1 7.9 0.00017 41.3 9.6 72 109-188 198-278 (381)
477 PRK02705 murD UDP-N-acetylmura 82.1 4.4 9.5E-05 44.4 7.8 67 113-185 2-75 (459)
478 PLN02662 cinnamyl-alcohol dehy 82.0 4.9 0.00011 41.1 7.7 71 110-187 4-85 (322)
479 cd05283 CAD1 Cinnamyl alcohol 81.7 7.1 0.00015 40.5 8.8 88 109-210 169-261 (337)
480 PRK13394 3-hydroxybutyrate deh 81.7 5.2 0.00011 39.3 7.5 36 108-150 5-41 (262)
481 PRK07231 fabG 3-ketoacyl-(acyl 81.6 5.4 0.00012 38.8 7.6 36 108-150 3-39 (251)
482 PRK01581 speE spermidine synth 81.6 8.7 0.00019 42.1 9.7 93 112-213 152-269 (374)
483 PRK11064 wecC UDP-N-acetyl-D-m 81.5 3.6 7.8E-05 45.2 6.9 75 106-193 316-401 (415)
484 PRK06079 enoyl-(acyl carrier p 81.5 6.1 0.00013 39.4 8.0 86 108-214 5-93 (252)
485 cd05313 NAD_bind_2_Glu_DH NAD( 81.2 2.3 5.1E-05 44.1 5.0 32 106-144 34-65 (254)
486 COG0334 GdhA Glutamate dehydro 81.2 3.9 8.5E-05 45.2 6.9 38 107-151 204-241 (411)
487 PRK09186 flagellin modificatio 81.2 6 0.00013 38.9 7.7 35 108-149 2-37 (256)
488 PRK04523 N-acetylornithine car 81.2 5.5 0.00012 42.9 7.9 70 108-186 166-252 (335)
489 PRK06138 short chain dehydroge 81.1 7.6 0.00016 37.9 8.4 35 108-149 3-38 (252)
490 PF01494 FAD_binding_3: FAD bi 80.8 2.6 5.6E-05 42.8 5.1 32 113-150 3-34 (356)
491 PRK14805 ornithine carbamoyltr 80.6 4.5 9.8E-05 42.9 7.0 70 107-186 144-222 (302)
492 TIGR03325 BphB_TodD cis-2,3-di 80.4 7.5 0.00016 38.7 8.2 35 108-149 3-38 (262)
493 PRK07984 enoyl-(acyl carrier p 80.4 8.3 0.00018 39.1 8.6 88 108-214 4-94 (262)
494 PRK10083 putative oxidoreducta 80.4 15 0.00033 37.8 10.7 92 108-209 159-256 (339)
495 cd08234 threonine_DH_like L-th 80.2 8.6 0.00019 39.3 8.8 90 109-209 159-254 (334)
496 PRK14031 glutamate dehydrogena 80.1 5 0.00011 44.9 7.4 33 106-145 224-256 (444)
497 cd08285 NADP_ADH NADP(H)-depen 80.0 9 0.00019 39.9 9.0 91 109-209 166-263 (351)
498 PRK05867 short chain dehydroge 79.8 5.4 0.00012 39.4 7.0 35 108-149 7-42 (253)
499 PRK12828 short chain dehydroge 79.7 15 0.00031 35.4 9.7 36 108-150 5-41 (239)
500 PRK07523 gluconate 5-dehydroge 79.5 6.3 0.00014 38.9 7.3 36 107-149 7-43 (255)
No 1
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=7.8e-90 Score=733.92 Aligned_cols=441 Identities=23% Similarity=0.307 Sum_probs=394.7
Q ss_pred ccccccchhhhhhhccccccceeeeccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 71 LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
.|||||++|++|+++++-- +.|. |.+|++....|+| |+|+|||||+||+++|+|||++ |++|+||+|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--r~~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKC--RFMD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccc--eecc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 4999999999999984321 1222 3349888999999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhccccc
Q 007987 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD 225 (582)
Q Consensus 151 -----sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~ 225 (582)
++++++|.+.||. +.+++|++++||+|++++||..+..++++|+|+||+|++|.++|||+|++. ++.
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 6899999999997 578999999999999999999989999999999999999999999999874 568
Q ss_pred CCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec--cCCCHHHHHHHHHHHHHhCCCc--ccccccccccccc
Q 007987 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSD 301 (582)
Q Consensus 226 ~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~--qd~tgeale~alala~aiG~~~--~iettf~~E~~sD 301 (582)
||+|++||||+||+||+.||++|++| +|+|++|||+ ||++|+++++|++|+.++|+++ +++|||++|+++|
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 99999999999999999999999994 8999999999 8999999999999999999996 8999999999999
Q ss_pred chhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhH
Q 007987 302 IFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPC 380 (582)
Q Consensus 302 lfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~ 380 (582)
||||| +|||+++++++++||.+|+.|++|++||+++.+++. +|+++|+++||..|++++|+ +++||.|.. .+.+
T Consensus 217 L~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~--tak~ga~~~--~~~~ 291 (487)
T PRK05225 217 LMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSN--PAKIRAFEL--SEQL 291 (487)
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccc--hhhcccccc--cHHH
Confidence 99999 999999999999999999999999999999999985 69999999999999999998 556998743 2455
Q ss_pred HHHH----HHHHHhccCChhhhHHHHhcccccccCCCCCCc-ch-hhhcChHHHHHHHHHccCCCCCCCCCCcchhHHHH
Q 007987 381 MEIL----YECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYA 454 (582)
Q Consensus 381 ~~~m----~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~~-~~-~i~~~~ie~vG~~lRa~~~~~~~g~~~p~t~gv~~ 454 (582)
|++| +++|++|+||+|+|+|+.+|. .|.+.+. |+ ++.+|++|++-. .+.+|-+++||..||+|
T Consensus 292 k~~m~p~f~~~~~~I~sG~fak~~m~d~~-----~~~~~l~~~r~~~~~~~~E~~~~------~~~~~~~~~~~erG~Lm 360 (487)
T PRK05225 292 KEIMAPLFQKHMDDIISGEFSSTMMADWA-----NDDKKLLTWREETGKTAFENAPQ------YEGKISEQEYFDKGVLM 360 (487)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHh-----cCChHHHHHHHHhhcCchhhccc------ccccchhHHHHhhhhHH
Confidence 6666 999999999999999999976 3556655 44 668999999743 45678889999999999
Q ss_pred HHHH-H----HHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccccccccchhHHHHHHHHhhh
Q 007987 455 ALMM-A----QIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAV 529 (582)
Q Consensus 455 ~~~~-a----~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~~~~~~~~~~~~~~~ 529 (582)
+.|+ | |+|+|++.||+|+++++||+.|. +++.|||.++||+||+.+||+||+||++...||--+.+ +++|..|
T Consensus 361 ~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~Gl~~M~~~iSdTAeyG~y~~g~~vi~~m-k~~l~~I 438 (487)
T PRK05225 361 VAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISDTAEYGNYLFSHAAVPLL-KDFMATL 438 (487)
T ss_pred HHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhhHhhcCCcccChHHHHHH-HHHHHHc
Confidence 9988 5 59999999999999999999999 99999999999999999999999999999999988555 7788899
Q ss_pred cCCCcc------------chhHHHhhhcChHHHHHH
Q 007987 530 DNDAPI------------NGDLISNFLSDPVHGAIE 553 (582)
Q Consensus 530 ~~~~~~------------~~~~~~~~~~~~~~~~~~ 553 (582)
++|+.. ...+....++||+++.=+
T Consensus 439 q~G~fak~~~e~~~g~~~l~~~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 439 QPGDLGKGLPSNAVDNAQLRDVNEAIRNHPIEQVGK 474 (487)
T ss_pred CCCHHHhhHHhccCCcHHHHHHHHHHhcCcHHHHHH
Confidence 888433 456777888999886543
No 2
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.6e-81 Score=634.21 Aligned_cols=314 Identities=32% Similarity=0.535 Sum_probs=295.2
Q ss_pred ccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccC
Q 007987 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (582)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~A 179 (582)
.+.++ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|+++||. +.+++|++++|
T Consensus 9 ~da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~A 75 (338)
T COG0059 9 EDADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRA 75 (338)
T ss_pred ccCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcC
Confidence 34444 58999 9999999999999999999999 999999999999999999999999 68999999999
Q ss_pred CeEEEeccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCC
Q 007987 180 DLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~G 258 (582)
|+|++++||..|.+||+ +|.|+|++|++|.|+||||+||. ++.||+|++||||+||+||+.||++|++ |+|
T Consensus 76 Dvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~-----G~G 147 (338)
T COG0059 76 DVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKE-----GFG 147 (338)
T ss_pred CEEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHc-----cCC
Confidence 99999999999999999 79999999999999999999984 6799999999999999999999999999 489
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHhCCCc--cccccccccccccchhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 007987 259 INSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYK 335 (582)
Q Consensus 259 v~aliAv~qd~tgeale~alala~aiG~~~--~iettf~~E~~sDlfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~ 335 (582)
+|++|+|+||+||+++++|++|++++|++| +++|||++|+++|||||| +|||++.++|.++||++|++||+||+||+
T Consensus 148 vP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~Ayf 227 (338)
T COG0059 148 VPALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYF 227 (338)
T ss_pred ceeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999986 899999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCC
Q 007987 336 NTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEG 412 (582)
Q Consensus 336 ~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g 412 (582)
||+|+++ +|+++|+|+||..|+++||| |++||.|..+.. ..+|+.|+++|++||||+|+++|++|++ .|
T Consensus 228 E~lhE~k-lIvdLiyegGi~~M~~siSn--TAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~-----~g 299 (338)
T COG0059 228 ECLHELK-LIVDLIYEGGITNMRYSISN--TAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQ-----AG 299 (338)
T ss_pred HHHHHHH-HHHHHHHHhhHHHHHHhcCC--HHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhh-----cC
Confidence 9999995 89999999999999999998 778999976652 3469999999999999999999999986 58
Q ss_pred CCCCc-ch-hhhcChHHHHHHHHHccCCCCCC
Q 007987 413 LPAFP-MG-KIDQTRMWKVGERVRSTRPAGDL 442 (582)
Q Consensus 413 ~~~~~-~~-~i~~~~ie~vG~~lRa~~~~~~~ 442 (582)
+|.|. ++ ..++|+||+||++||++|||.+.
T Consensus 300 ~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~~~ 331 (338)
T COG0059 300 RPKLEALREETAEHEIEKVGKELRKMMPWEKK 331 (338)
T ss_pred CHHHHHHHHHhhcChHHHHHHHHHHhcchhcc
Confidence 89988 44 55899999999999999999873
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=5.8e-75 Score=601.01 Aligned_cols=309 Identities=30% Similarity=0.502 Sum_probs=288.2
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
....|+| |||||||+|+||+++|++|+++ |++|+++++. +++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3578999 9999999999999999999999 9999988876 6678888888997 468999999999999
Q ss_pred EeccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 007987 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (582)
Q Consensus 184 LaVPd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~al 262 (582)
+++|+..+..++. +++++|++|++|+|+|||+|+|. +|.||+|++||||+||+||+.||++|++ |+|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~-----G~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQE-----GNGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHc-----CCCceeE
Confidence 9999988888986 69999999999999999999984 6799999999999999999999999999 4899999
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCc--cccccccccccccchhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007987 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 339 (582)
Q Consensus 263 iAv~qd~tgeale~alala~aiG~~~--~iettf~~E~~sDlfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ 339 (582)
|||+||+||++++++++|+++||++| +++|||++|+++|||||| +|||++.++|+++||++|++||+||+||+||+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999996 899999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCC
Q 007987 340 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 416 (582)
Q Consensus 340 ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~ 416 (582)
|+ +||+++|+|+|+.+|+++||| |+|||+|.+++. ..+|+.|+++|++||+|+|+|+|++||+ .|.|.|
T Consensus 229 e~-kli~dli~e~G~~~m~~~~S~--taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~-----~g~~~~ 300 (335)
T PRK13403 229 EL-KLIVDLMYEGGLTNMRHSISD--TAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQ-----AGRPTY 300 (335)
T ss_pred HH-HHHHHHHHHccHHHHHHhhCc--HHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----CCCHHH
Confidence 99 699999999999999999998 789999987753 5589999999999999999999999976 588988
Q ss_pred c--chhhhcChHHHHHHHHHccCCCCC
Q 007987 417 P--MGKIDQTRMWKVGERVRSTRPAGD 441 (582)
Q Consensus 417 ~--~~~i~~~~ie~vG~~lRa~~~~~~ 441 (582)
+ ++++++|+||+||++||++|||.+
T Consensus 301 ~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 301 NAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 7 346699999999999999999954
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.4e-69 Score=564.79 Aligned_cols=310 Identities=32% Similarity=0.524 Sum_probs=289.3
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
....|+| ++|+|||+|+||+++|++|+++ |++|++++++++++++.+.+.|+. ..+.++++++||+|+
T Consensus 11 ~~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~-----~~s~~eaa~~ADVVv 78 (330)
T PRK05479 11 DLSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFE-----VLTVAEAAKWADVIM 78 (330)
T ss_pred ChhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCe-----eCCHHHHHhcCCEEE
Confidence 3477899 9999999999999999999999 999988988878889999999997 358999999999999
Q ss_pred EeccchhHHHHH-HHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 007987 184 LLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (582)
Q Consensus 184 LaVPd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~al 262 (582)
+++||..+.+++ ++|+++|++|++|+++|||++++++. .||++++|||+|||+|++.||++|+. |+|+|++
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~-----G~Gv~~l 150 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEE-----GGGVPCL 150 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhc-----CCCceEE
Confidence 999999999999 67999999999999999999998754 88999999999999999999999999 5899999
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCc--cccccccccccccchhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007987 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 339 (582)
Q Consensus 263 iAv~qd~tgeale~alala~aiG~~~--~iettf~~E~~sDlfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ 339 (582)
+++++|+++++++++++|++++|+++ +++|||.+|+++|||||| +|||++.++++++||++|++||+||+||+||+|
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~ 230 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLH 230 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999995 899999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCC
Q 007987 340 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 416 (582)
Q Consensus 340 ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~ 416 (582)
|+ +||+++|+++|+.+|+++||| |+|||+|.+++. ..+|+.|+++|++||+|+|+|+|++||+ .|.|.|
T Consensus 231 e~-k~i~dl~~~~g~~~m~~~~s~--ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~-----~~~~~~ 302 (330)
T PRK05479 231 EL-KLIVDLIYEGGIANMRYSISN--TAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENK-----AGRPTF 302 (330)
T ss_pred HH-HHHHHHHHHccHHHHHHhcCc--HhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCcHHH
Confidence 99 589999999999999999998 789999977653 5689999999999999999999999976 588888
Q ss_pred c--chhhhcChHHHHHHHHHccCCCCC
Q 007987 417 P--MGKIDQTRMWKVGERVRSTRPAGD 441 (582)
Q Consensus 417 ~--~~~i~~~~ie~vG~~lRa~~~~~~ 441 (582)
+ ++++++|+||+||++||++|+|.+
T Consensus 303 ~~~~~~~~~~~~e~~g~~lr~~~~~~~ 329 (330)
T PRK05479 303 KALRREEAEHPIEKVGAKLRAMMPWIK 329 (330)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhccccc
Confidence 8 446799999999999999999965
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=3.2e-65 Score=529.80 Aligned_cols=306 Identities=33% Similarity=0.537 Sum_probs=278.8
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
|+| |+|+|||+|+||+++|++|+++ |++++++++.++++++.+.+.|+. +.++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888776778888888987 3568899999999999999
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 188 d~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|+.+.. +.++|.++++++.+|+++|||++++++. .||++++|||+|||+|++.||++|++ |+|+|++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~-----G~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKE-----GFGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhc-----CCCeeEEEEec
Confidence 995555 4557999999999999999999999865 78889999999999999999999999 48999988899
Q ss_pred cCCCHHHHHHHHHHHHHhCCCc--cccccccccccccchhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 343 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~--~iettf~~E~~sDlfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ei~g 343 (582)
+++++++++++++|++++|..| +++|+|++|+++|+|++| +||||+|||+.+++|++|+.|||||+||++|+||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999995 899999999999999999 9999999999999999999999999999999999976
Q ss_pred HHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc--hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--ch
Q 007987 344 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MG 419 (582)
Q Consensus 344 lia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~--~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~~--~~ 419 (582)
+++||+++|+..|+++||+ |+|||+|..+.. +.+|+.|+++|++||||+|+++|+++++ .|.|.|+ ++
T Consensus 221 -~~~l~~e~g~~~l~~~Vss--taeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~~~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRISN--TAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENE-----AGKPAFNTARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcCC--HHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhcc-----CCcHHHHHHHH
Confidence 9999999999999999997 778999855532 4478899999999999999999999864 5778887 44
Q ss_pred hhhcChHHHHHHHHHccCCCCC
Q 007987 420 KIDQTRMWKVGERVRSTRPAGD 441 (582)
Q Consensus 420 ~i~~~~ie~vG~~lRa~~~~~~ 441 (582)
++++|+||+||++||++|||++
T Consensus 293 ~~~~~~~e~vg~~lr~~~~~~~ 314 (314)
T TIGR00465 293 YESEHEIEKVGKELRAMVPAGK 314 (314)
T ss_pred HHhCCcHHHHHHHHHHhccCCC
Confidence 6799999999999999999975
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=1.4e-40 Score=315.21 Aligned_cols=160 Identities=44% Similarity=0.728 Sum_probs=137.8
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
|+| |+|+|||||+||+++|+||||| |++|+|++|+++++|++|++.||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 688 9999999999999999999999 999999999999999999999999 5899999999999999999
Q ss_pred chhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|..|.++|+ +|.|+|++|++|.|+|||+++| ..+.||++++|+|++||+||+.||++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~---~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHY---GLIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHC---TTS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhc---CcccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 7999999999999999999987 357899999999999999999999999995 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCC
Q 007987 267 QDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~ 287 (582)
||+|+++++++++|+++||++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999985
No 7
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=100.00 E-value=5.5e-36 Score=280.37 Aligned_cols=140 Identities=27% Similarity=0.447 Sum_probs=124.7
Q ss_pred ccccccccchhhh-hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhh
Q 007987 294 LEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 372 (582)
Q Consensus 294 f~~E~~sDlfgEq-vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~ 372 (582)
|++|+++|||||| +|||+++++|+++||++|++||+||.||++|+|++ ++|+++|+++|+.+|+++||| |++||++
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~-~lI~dli~~~Gi~~M~~~iS~--TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHET-KLIVDLIYEGGIYGMYDSISD--TAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHH-HHHHHHHHHHHHHHHHHTS-H--HHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcCC--HHHhHHH
Confidence 6799999999999 99999999999999999999999999999999995 799999999999999999997 7789999
Q ss_pred hccc-c-hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCC
Q 007987 373 YSAS-Y-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 441 (582)
Q Consensus 373 ~~~~-~-~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lRa~~~~~~ 441 (582)
..+. + .+++.+|+++|++|+||+|+|+|+.+++. |.|.+. ++++++|++|+||++||++|||+|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~-----g~~~l~~~~~~~~~~~~e~VG~~lR~~~~~~k 145 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQA-----GDPRLNAMREKIRNHPIEKVGEKLRAMMPWMK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT-----TSHHHHHHHHHHSTSHHHHHHHHHHHTHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcC-----CCHHHHHHHHhhcCCcchhHHHHHHHhccccC
Confidence 5543 2 56899999999999999999999999763 556655 558899999999999999999975
No 8
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.98 E-value=1.4e-31 Score=272.49 Aligned_cols=219 Identities=19% Similarity=0.262 Sum_probs=193.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G----~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++||+|||+|+||.+++.+|.++ | .+|++.++...+....+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47899999999999999999999 7 378888877666556788888873 567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
||+...+++.++.+ ..++++ |++++|+.+..+++ .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999998 667765 67999999999987 677 899999999999999 899999 787
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECI 341 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei 341 (582)
..+++++.++.+.++++++|.. ..++|...|.++ +++||+||| +|++.|++|+.|+|++.|++++.|++
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v-----~~v~E~~~da~T--aisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~ 205 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV-----VEVEESLMDAVT--ALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTV 205 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe-----EEechHHhhHHH--HHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999999985 444456666666 799999996 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 342 TGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 342 ~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
.| .++|+.+.|. ..|+++||.+.
T Consensus 206 ~G-aakll~e~~~~p~~Lr~~VtSPG 230 (266)
T COG0345 206 AG-AAKLLLESGEHPAELRDQVTSPG 230 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCcCCC
Confidence 99 9999999999 79999999754
No 9
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.97 E-value=1.4e-30 Score=265.53 Aligned_cols=219 Identities=19% Similarity=0.280 Sum_probs=187.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHH-HcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~----~ViVg~r~~sks~~~A~-~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+||+|||+|+||.+++.+|.++ |+ +|++.+++. .+.+.+. +.|+.. +.+..+++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~-~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNV-SNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCH-HHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 63 566655543 3344444 478754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|..+ |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999988875 56999999999876 5666678999999999999 899999 667
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECI 341 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei 341 (582)
.++++.+.++.+..+|..+|.. ...+|...|.++ +|+||+||| +|++.|++|+.|+++++|.+++.|++
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~-----~~~~E~~~d~~t--alsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT-----EVVNEKLMDVVT--SISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAV 208 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE-----EEEcHHHhhhHH--HhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8899999999999999999975 344566677776 799999995 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 342 TGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 342 ~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
.| .++|+.+.|. ..+++.|+.+.
T Consensus 209 ~G-~a~ll~~~~~~p~~l~~~V~sPG 233 (272)
T PRK12491 209 LG-SAKMVLETGIHPGELKDMVCSPG 233 (272)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCCc
Confidence 99 9999999888 79999999764
No 10
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.96 E-value=1.9e-27 Score=242.50 Aligned_cols=220 Identities=15% Similarity=0.189 Sum_probs=182.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHH-HHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G----~~ViVg~r~~sks~~~-A~~~G-~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
|++|+|||+|+||.+++.+|+++ | .+|++..++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999988 6 4676666643322222 22232 221 3577888999999999
Q ss_pred eccchhHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 007987 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
++|++...++++++.+++++++ +|++++|+.+..+++ .+|. .+|||+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 467999999988876 4553 58999999999999 789998 6
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHc-CCCHHHHHHHHH
Q 007987 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTEN-GMNEDLAYKNTV 338 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~-Gl~pe~Ay~~~~ 338 (582)
+...+++++.++.+..+|..+|.. ..++|.+.|.++ +|+||+||| ++++.|++++. |+++++|++++.
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~-----~~v~E~~~d~~t--al~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHV-----MTIREENMDIAS--NLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCE-----EEEchhhCceee--eeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 668889999999999999999985 344566677666 699999996 89999999999 799999999999
Q ss_pred HHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 339 ECITGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 339 ~ei~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
|++.| .++|+.++|. ..++++|+.+.
T Consensus 207 ~~~~G-~a~l~~~~~~~p~~l~~~v~spg 234 (277)
T PRK06928 207 FALAG-TGKLLVEEDYTFSGTIERVATKG 234 (277)
T ss_pred HHHHH-HHHHHHccCCCHHHHHHhCCCCC
Confidence 99999 9999999886 99999999764
No 11
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.95 E-value=1.1e-26 Score=234.75 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=178.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~----~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
+||+|||+|+||++++.+|.++ +. ++++.+++..+ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 6899999999999999999987 52 35544443211 24432 4577888899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeecc
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~q 267 (582)
|+...++++++.++++++.+|++++|+++..++. .++....++|+|||+|... |.|+.. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999888777889999999888765 4555567999999999777 567777 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 007987 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECITG 343 (582)
Q Consensus 268 d~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~g 343 (582)
+++.+..+.+..+|+.+|.. ..++|...|.++ +++||+||| ++++.|++++.|+++++|++++.|++.|
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~-----~~v~E~~~d~~t--a~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G 203 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII-----QEIKEKDMDIAT--AISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILG 203 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE-----EEEChHHcchhh--hhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88999999999999999975 444566777777 699999995 9999999999999999999999999999
Q ss_pred HHHHHHHHhcH--HHHHHhcCcch
Q 007987 344 IISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 344 lia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
.++|+.++|. ..++|+|+.+.
T Consensus 204 -~a~ll~~~~~~~~~l~~~v~spg 226 (260)
T PTZ00431 204 -SVHMVKASDQPVQQLKDDVCSPG 226 (260)
T ss_pred -HHHHHHhcCCCHHHHHHhCCCCC
Confidence 8999999985 89999999764
No 12
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=2.5e-25 Score=220.33 Aligned_cols=220 Identities=16% Similarity=0.197 Sum_probs=178.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC---ce-EEEEecCCc-ccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G---~~-ViVg~r~~s-ks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+||+|||+|+||.+++.+|.+. | .+ +++..|++. +..+.+...|+.. ..+.+++++++|+||+++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 5 23 545555433 3334444467653 467888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
||+.+.++++++.++++...+|++++|+.+..+++ .++.+..++++|||.|... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998886444567889999988876 5666678999999999877 6899994 556
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECIT 342 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~ 342 (582)
.+.++++.+.+.++|..+|.. .+..|.+.|.++ +++||+|+| ++++.|.+++.|+++++|++...+++.
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~-----~~~~e~~~~~~~--a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~ 211 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTS-----QLCTEEEVHQLT--AVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMIS 211 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCE-----EEECHHHcchHH--hhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778999999999999999986 334566677776 699999995 999999999999999999999999999
Q ss_pred HHHHHHHHHhc-HHHHHHhcCcch
Q 007987 343 GIISKIISTQG-MLAVYNSFSGED 365 (582)
Q Consensus 343 glia~lI~e~G-i~~m~d~vS~~~ 365 (582)
| .++++.+++ ..+++|+|+.+.
T Consensus 212 g-~~~~~~~~~~~~~l~~~v~spg 234 (245)
T PRK07634 212 G-SASMLEQTQDPANLREQVTTPG 234 (245)
T ss_pred H-HHHHHhCCCCHHHHHHhCCCCC
Confidence 9 788887743 389999998754
No 13
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.93 E-value=8.6e-25 Score=222.40 Aligned_cols=219 Identities=14% Similarity=0.178 Sum_probs=177.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCccc-HHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G----~~ViVg~r~~sks-~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+||+|||+|+||.+++.+|.++ | .++++.+|+..+. ...+...|+.. ..++.++++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 6 4677766654332 33344557764 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
||+.+.++++++.+.++++++|+ +++|+++..+.+ ..+.+.+|+++|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999898888766 569999887765 4556789999999998888 678886 666
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECI 341 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei 341 (582)
..+.+.+.++.++.+|..+|.. .+.+|...|.+. .++|++|++ ++++.|.+++.|++++.|++...+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~-----~~v~e~~~~~~~--a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~ 210 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV-----SVVEEEDMHAVT--ALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTM 210 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE-----EEeCHHHhhhHH--HhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7788899999999999999974 233333333333 699999995 89999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcc
Q 007987 342 TGIISKIISTQGM--LAVYNSFSGE 364 (582)
Q Consensus 342 ~glia~lI~e~Gi--~~m~d~vS~~ 364 (582)
.| .++++.+.+. ..+++.++.+
T Consensus 211 ~g-sa~~~~~~~~~~~~l~~~v~sp 234 (279)
T PRK07679 211 IG-AAEMLKASEKHPSILRKEITSP 234 (279)
T ss_pred HH-HHHHHHhcCCCHHHHHHhcCCC
Confidence 88 7788886654 8888988643
No 14
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.93 E-value=2.6e-24 Score=216.00 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=179.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~----~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
+||+|||+|+||.+++++|+++ |+ ++++.++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5799999999999999999998 76 77776243344456666778864 5678889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|+...++++++.+.++++++ |++++|+.+..+.. ..+.. +++++|||.|... |.|... ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999888888886 56779998776654 33333 7999999999987 567766 5667
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECIT 342 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~ 342 (582)
...+.+.++.++.+++.+|.. .+..|...|.+. .++|++|++ ++++.|++++.|+++++|++...+++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~~-----~~~~e~~~d~~~--~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~ 206 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGKI-----WVVDEKLLDAVT--GLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVL 206 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCCE-----EEeCHHHcchhH--hhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 778889999999999999963 334455566665 689999995 899999999999999999999999998
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcc
Q 007987 343 GIISKIISTQGM--LAVYNSFSGE 364 (582)
Q Consensus 343 glia~lI~e~Gi--~~m~d~vS~~ 364 (582)
| .++++.+.|. ..+++.|+.+
T Consensus 207 g-s~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 207 G-AAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCC
Confidence 7 8888888877 8899999874
No 15
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.93 E-value=4.3e-25 Score=221.73 Aligned_cols=218 Identities=20% Similarity=0.262 Sum_probs=189.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHH-HHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~----~ViVg~r~~sks~~~-A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++|||||.|+|..++++++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4699999999999999999988 76 4544444 3455555 78888875 566789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
+|+.+..++.++.+.+..+++| +.++|..+..+++ .++...+|||+|||+|..+ |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999999888888865 6999999988876 5667789999999999999 789996 898
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVEC 340 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~e 340 (582)
..+++.++.+++..++..+|.. .|.++++++.. .|+|++||| +|++.|.+|+.|+||.+||++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999975 44555555555 799999996 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 341 ITGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 341 i~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
+.| .++|+.++|. ..++|.||.|.
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPg 231 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPG 231 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCC
Confidence 999 9999999998 99999999765
No 16
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=211.37 Aligned_cols=219 Identities=17% Similarity=0.234 Sum_probs=175.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEEecCCcccHHHHHH-cCceecCCCcCCHHhhhccCCeEEEec
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G---~~ViVg~r~~sks~~~A~~-~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
|++|+|||+|+||.+++..|.++ | .+|.+.+|+.. ..+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 47899999999999999999988 7 46666666543 3444444 47653 467788889999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|+..+.++++++.+++ +..+|++++|+....++. .++.+.+++++|||.|... |.|++. +++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999887 344677999998877765 4555678999999998766 567765 6677
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECIT 342 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~ 342 (582)
.+.+.++++.+..+++.+|... ...+|.+.|.+. +++|++|+| ++++.+.+++.|+++++|.+...+++.
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~----~~~~e~~~d~~~--a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 207 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVV----WVDDEKQMDAVT--AVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVL 207 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEE----EECChHhcchHH--HHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8889999999999999999641 111244444444 799999974 889999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcc
Q 007987 343 GIISKIISTQGM--LAVYNSFSGE 364 (582)
Q Consensus 343 glia~lI~e~Gi--~~m~d~vS~~ 364 (582)
| .++++.+.|. ..+++.|+.+
T Consensus 208 g-~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 208 G-AAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCC
Confidence 8 7999988876 8888999864
No 17
>PRK07680 late competence protein ComER; Validated
Probab=99.92 E-value=1.9e-23 Score=211.70 Aligned_cols=218 Identities=14% Similarity=0.192 Sum_probs=172.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHc-CceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~----~ViVg~r~~sks~~~A~~~-G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++|+|||+|+||.+++.+|.++ |. +|.+..|+..+....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 63 5666666533322222333 5653 467888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
||+...++++++.++++++++| .+++|+++..++. .++ ..++++|||+|... +.|... ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888765 5777898877765 344 36999999988655 467776 445
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH----HHHHHHHHHH-cCCCHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI----VESLFRRFTE-NGMNEDLAYKNTVEC 340 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe-~Gl~pe~Ay~~~~~e 340 (582)
....+.+.++.+..++..+|.. .+..|...|.+. .++|++|+| ++++.+.+++ .|+++++|++...++
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~-----~~i~e~~~~~~~--~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP-----LVIEEDITRVSS--DIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEM 205 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE-----EEEChHhcchhh--hhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6667888899999999999964 333444444544 699999996 7999999998 899999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 341 ITGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 341 i~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
+.| .++|+.+++. ..|+++|+.+.
T Consensus 206 ~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 206 LIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 7799998875 88999999754
No 18
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.91 E-value=5.9e-25 Score=236.36 Aligned_cols=152 Identities=15% Similarity=0.255 Sum_probs=122.4
Q ss_pred HHHHHHhCCCccccccccc--cccccchhhh-hhhchHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 007987 278 LGWSVALGSPFTFATTLEQ--EYRSDIFGER-ILLGAVH-GIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 353 (582)
Q Consensus 278 lala~aiG~~~~iettf~~--E~~sDlfgEq-vLsG~~p-AlieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI~e~G 353 (582)
+.|-..+..+ .||++..- +..+.-|=|+ +|+|.+. +.+++.||++|++||+||+||+|++||+ +||+++|+++|
T Consensus 327 ~~~r~~~~~~-~~E~~~~~~~~~~~~~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~G 404 (487)
T PRK05225 327 LTWREETGKT-AFENAPQYEGKISEQEYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKR 404 (487)
T ss_pred HHHHHHhhcC-chhhcccccccchhHHHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 4555555554 23333221 1122234466 8998877 7899999999999999999999999999 69999999999
Q ss_pred HHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHH
Q 007987 354 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGE 431 (582)
Q Consensus 354 i~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~i~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~ 431 (582)
+++|+.+||| |||||+|..+ ..+...|+++|++||+|+|+|+| .+|+ .|.|.|+ ++++++|+||+||+
T Consensus 405 l~~M~~~iSd--TAeyG~y~~g--~~vi~~mk~~l~~Iq~G~fak~~-~e~~-----~g~~~l~~~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 405 LYEMNVVISD--TAEYGNYLFS--HAAVPLLKDFMATLQPGDLGKGL-PSNA-----VDNAQLRDVNEAIRNHPIEQVGK 474 (487)
T ss_pred HHHHHHHhhh--HhhcCCcccC--hHHHHHHHHHHHHcCCCHHHhhH-Hhcc-----CCcHHHHHHHHHHhcCcHHHHHH
Confidence 9999999998 8899998543 22446999999999999999999 7765 4778777 55789999999999
Q ss_pred HHHccCCCCC
Q 007987 432 RVRSTRPAGD 441 (582)
Q Consensus 432 ~lRa~~~~~~ 441 (582)
+||++|+||+
T Consensus 475 ~LR~~m~~m~ 484 (487)
T PRK05225 475 KLRGYMTDMK 484 (487)
T ss_pred HHHHHhHhhh
Confidence 9999999998
No 19
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.89 E-value=4.4e-22 Score=199.97 Aligned_cols=196 Identities=19% Similarity=0.248 Sum_probs=166.1
Q ss_pred eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcE-EEEecCchhhhhh
Q 007987 142 VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQ 220 (582)
Q Consensus 142 ~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~ 220 (582)
+|++..|+..+..+.+.+.|+.. ..++.++++++|+|||++||+.+.++++++.+.+.++++ |++++|+++..++
T Consensus 11 ~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~ 86 (245)
T TIGR00112 11 DIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS 86 (245)
T ss_pred eEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence 67777776545445556668764 567888999999999999999999999999988776665 6799999999887
Q ss_pred cccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccc
Q 007987 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (582)
Q Consensus 221 ~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~s 300 (582)
+ .++.+.+++|+|||+|... |+|++. ++..++++.+..+.+..+|..+|.. ...+|...
T Consensus 87 ~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~-----~~v~E~~~ 145 (245)
T TIGR00112 87 Q---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV-----VELPEALM 145 (245)
T ss_pred H---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE-----EEECHHHc
Confidence 6 5666678999999999998 789998 6778889999999999999999975 34456667
Q ss_pred cchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 301 DIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 301 DlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
|.++ +|+||+||| ++++.|++++.|+++++|.+++.|++.| .++|+.++|. ..+++.|+.+.
T Consensus 146 ~~~t--alsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~spg 213 (245)
T TIGR00112 146 DAVT--ALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSPG 213 (245)
T ss_pred chHH--hhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCCc
Confidence 7776 699999995 9999999999999999999999999999 9999988866 89999998754
No 20
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.88 E-value=1.6e-21 Score=195.93 Aligned_cols=211 Identities=16% Similarity=0.171 Sum_probs=162.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHc-CceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~---~ViVg~r~~sks~~~A~~~-G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
++|+|||+|+||.+++++|++. |+ .+.+..|+.++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999987 64 2445555433333333334 3543 5688889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||.|... +.|++.+ +..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998773 567775 56889999888876 4556678999999998886 5688773 322
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 342 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pA----lieAl~d~lVe~Gl~pe~Ay~~~~~ei~ 342 (582)
.+.++.+++.+|.. ..+.+|...|+|+. ++ ++|+ +++++.+.+++.|+++++|++...+++.
T Consensus 133 -------~~~~~~l~~~lG~~----~~~~~e~~~d~~~a--~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 198 (258)
T PRK06476 133 -------DPFVAALFDALGTA----VECDSEEEYDLLAA--AS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFA 198 (258)
T ss_pred -------HHHHHHHHHhcCCc----EEECChHhccceee--hh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 25789999999985 12335678888884 44 3455 5899999999999999999999999999
Q ss_pred HHHHHH-HHHhcH--HHHHHhcCcch
Q 007987 343 GIISKI-ISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 343 glia~l-I~e~Gi--~~m~d~vS~~~ 365 (582)
| .++| +.+++. ..++++|+.+.
T Consensus 199 G-~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 199 S-LAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred H-HHHHHHhcCCCCHHHHHHhCCCCC
Confidence 9 7888 577765 89999998754
No 21
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.81 E-value=1.1e-18 Score=184.39 Aligned_cols=219 Identities=16% Similarity=0.104 Sum_probs=156.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-s~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|+|||+|+||+++|++|++. |+++.+..++..+ ....+...|+. +....+++++++++|+||+++|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999998 8776665554322 22233334443 3334567888999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCC
Q 007987 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (582)
Q Consensus 191 ~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~ 269 (582)
..++++++.+ .++++++|+++++++...++......+...++|..|| ++|.. +..+..+......|.++++++.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e-~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSH-KSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCc-hhhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999875433221113456778999999 55543 1223332223345788889999989
Q ss_pred CHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Q 007987 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 349 (582)
Q Consensus 270 tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI 349 (582)
+.++++.++.++.++|+.. ....+.+.|.+. .+.+.+|.++-... +...|.+++.++.++.+...+ ++++.
T Consensus 151 ~~~~~~~v~~l~~~lGa~~----v~~~~~~HD~~~--A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRia 221 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAKF----VVLDAEEHDRAV--ALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRIA 221 (359)
T ss_pred CHHHHHHHHHHHHHcCCEE----EECCHHHHhHHH--hHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Ccccc
Confidence 9999999999999999751 112334445555 58999999866544 556688888898888887765 44444
No 22
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=99.77 E-value=6.2e-20 Score=172.27 Aligned_cols=123 Identities=23% Similarity=0.209 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccccccccchh---HHHHHHHH
Q 007987 450 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFD---YILTQQAL 526 (582)
Q Consensus 450 ~gv~~~~~~a~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~~~~---~~~~~~~~ 526 (582)
.|.+.++|.+++|+|.++||+|..++.|+++| +.++.++|+.+|+++|+++||+||++|.++|.|||. +.+++++|
T Consensus 17 ~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e-~~lI~dli~~~Gi~~M~~~iS~TAeyG~~~~~~r~~~~~k~~m~~~l 95 (145)
T PF01450_consen 17 CGGVHALVEAGFETLVEAGYSPEIAYFECLHE-TKLIVDLIYEGGIYGMYDSISDTAEYGAYTWGPRIIEAVKPLMKEIL 95 (145)
T ss_dssp THHHHHHHHHHHHHHHHTT--HHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHccHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999999999999999998 999999999999999999999999999999999999 66699999
Q ss_pred hhhcCCCccchhHHHhhhcChHHHHHHHhhccCCcceeecCCCCCcchh
Q 007987 527 VAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRP 575 (582)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (582)
+.|++|+..+.-+.++...+|. ..+.|.++|++....|+......||
T Consensus 96 ~~I~~G~fak~~i~e~~~g~~~--l~~~~~~~~~~~~e~VG~~lR~~~~ 142 (145)
T PF01450_consen 96 EDIQSGEFAKEWIEENQAGDPR--LNAMREKIRNHPIEKVGEKLRAMMP 142 (145)
T ss_dssp HHHHTTHHHHHHHHHHHTTSHH--HHHHHHHHSTSHHHHHHHHHHHTHT
T ss_pred HHhcCCcchHHHHHHhcCCCHH--HHHHHHhhcCCcchhHHHHHHHhcc
Confidence 9999999888888888888888 5567999999999988754333333
No 23
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.70 E-value=3.7e-16 Score=160.91 Aligned_cols=195 Identities=16% Similarity=0.208 Sum_probs=148.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceE-EEEecCCcccHHHHHHcCceecCCCcCCH-HhhhccCCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~V-iVg~r~~sks~~~A~~~G~~~~d~t~~~~-~Eav~~ADIVILaVPd~ 189 (582)
++|+|||+|.||+++|+.|+.. |+.+ +++.+....+.+.+.+.|+. |....+. .+++.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~--d~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVI--DELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcc--cccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 8866 45555555667788888887 3333343 67888899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhh-HHHHHhhcccccCCCceEEEeeccC
Q 007987 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~-vR~ly~~G~e~~G~Gv~aliAv~qd 268 (582)
+..++++++.|++++|++|++..+++-..++.-.-..|++++||..||.. |+. ...+| ++..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~-G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMF-GPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCC-CCccccccc--------CCCEEEEcCCCC
Confidence 99999999999999999999999886333322122566666999999954 552 23333 568899999998
Q ss_pred CCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCC
Q 007987 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGM 328 (582)
Q Consensus 269 ~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl 328 (582)
.+.+.++.+++++.++|+ +++.++.++|++. +. .+++.-+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~--~a--~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRV--MA--AVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHH--HH--HHHHHHHHHHHHHHHHHHhcCc
Confidence 889999999999999995 5777777766654 22 3455555566677666666555
No 24
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.66 E-value=2.6e-15 Score=153.22 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=132.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|+|||+|+||+++|+.|++. |++|++.++ +....+.+.+.|... . ..+..++++++|+||+++|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 4799999999999999999998 888766554 445577777777652 1 22333578899999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCCH
Q 007987 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (582)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tg 271 (582)
.++++++.++++++++|+++++++...++. .......+|..||... .. ...+..+......|.++++++.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HPm~G-~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHPMAG-TA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCCcCC-CC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 999999999999999999999987654433 1111235999999432 21 011222222223568888999999999
Q ss_pred HHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHH
Q 007987 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESL 319 (582)
Q Consensus 272 eale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl 319 (582)
++++.++.++..+|.. ++.. .+.+.|.+. .+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~---~~~~hD~~~--a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTA---DPEEHDRAV--ALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEc---CHHHHHHHH--HHHcchHHHHHHH
Confidence 9999999999999974 2222 223333333 4778888876533
No 25
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.66 E-value=4.6e-15 Score=150.82 Aligned_cols=194 Identities=17% Similarity=0.161 Sum_probs=132.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
++|+|||+|+||+++|++|++. |+ +|++ .+.+....+.+.+.|+.. . ..+..++. ++|+||+++|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~-~d~~~~~~~~~~~~g~~~--~-~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYG-YDHNELHLKKALELGLVD--E-IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEE-EcCCHHHHHHHHHCCCCc--c-cCCHHHHh-cCCEEEEeCcHH
Confidence 4799999999999999999988 75 5544 444444566777788752 1 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCC------ChhhHHHHHhhcccccCCCceEEE
Q 007987 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Png------pg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
.+.+++.++.+ ++++++|+++........+. +.--.+.++|+.||+. |.....++| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~--~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES--VPKHIRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH--HHHhcCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 99999888876554322211 0000135799999984 444433444 3577778
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCCHHHH
Q 007987 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNEDLA 333 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~pe~A 333 (582)
++.++.+.+..+.++.+++.+|.. ++.++.. +.|.... .+++.-+.+..++.+.+. .+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~---~hD~~~a-~vs~lph~~a~~l~~~~~-~~~~~~~~ 202 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGMR-IVYMDAK---EHDLHAA-YISHLPHIISFALANTVL-KEEDERNI 202 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCE-EEEeCHH---HHHHHHH-HHhHHHHHHHHHHHHHHH-hcCChHHH
Confidence 888888889999999999999964 3444433 3333332 345555555666666664 45555443
No 26
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.66 E-value=5.7e-15 Score=152.35 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=135.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
++|+|||+|+||.++++.|++. |+ +|++.+++ ....+.+.+.|+. +....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~--~~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLG--DRVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCC--ceecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 74 66655554 4456777777864 222456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCC------hhhHHHHHhhcccccCCCceEEE
Q 007987 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM------GPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngp------g~~vR~ly~~G~e~~G~Gv~ali 263 (582)
...++++++.++++++.+|+++++++...++.-.-..+.++.++..||... +....++| .|.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~--------~g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELF--------ENRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHH--------CCCeEEE
Confidence 999999999999999999998888764333221113456778999999542 22223444 3577878
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHH
Q 007987 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLF 320 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~ 320 (582)
++....+.++.+.++.++..+|.. .....+.+.|.+. .+.+.+|.++-.+.
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~----~~~~~~~~hD~~~--A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR----VEEMDPEHHDLVL--AITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE----EEEcCHHHHhHHH--HHHhhHHHHHHHHH
Confidence 888888889999999999999974 1222333444443 68999999865554
No 27
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.65 E-value=1.5e-14 Score=157.16 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=146.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|+||| +|+||.++|+.|++. |++|++..++..+..+.+.+.|+.. ..+..+++.++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888777765444446677778753 4577888999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCCcEEEeccCC-ChhhHHHHHhhcccccCCCceEEEeec
Q 007987 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~~~~~~i~~p~dv~VI~v~Png-pg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
..++++++.++++++++|++++++. ...+.+ .+|.++.+|..||.. |... .| .|..+++++.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPmaGp~~~---~~--------~g~~~il~p~ 136 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMFGPRTP---SL--------KGQVVILTPT 136 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCCCCCCc---cc--------CCCEEEEecC
Confidence 9999999999999999999887653 334443 456788999999852 3221 22 3566778888
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 338 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~ 338 (582)
.+.+++..+.+.+++..+|.. ++.++..++ |.+.. ..++.-+.+.-++...+.+.|++++.+...+.
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~~-v~~~~~e~H---D~~~a-~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGAR-VIVTSPEEH---DRIMS-VVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCCE-EEECCHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 878889999999999999974 333443333 33332 23333344466777788888999988776544
No 28
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.62 E-value=1.5e-14 Score=165.26 Aligned_cols=208 Identities=16% Similarity=0.137 Sum_probs=151.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
++|+|||+|+||.++++.|+.. |+ +|++.+++ ....+.+.+.|+. +....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~--~~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVI--DRGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCC--CcccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 73 66555554 3446677778875 222456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCCcEEEeccCCChh--h-------HHHHHhhcccccCC
Q 007987 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGP--S-------VRRLYVQGKEINGA 257 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~~~~~~i~~p~dv~VI~v~Pngpg~--~-------vR~ly~~G~e~~G~ 257 (582)
...++++++.++++++.+|+++++++ +..+++ .++. .+++++|++|.. . ...+|+
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~-------- 141 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEKSGVHAANADLFR-------- 141 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCcchhhhhhhHHhC--------
Confidence 99999999999999999999999886 444443 2332 134555665532 2 123333
Q ss_pred CceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHH-HHHHHHHHHHHcCCCHHHHHHH
Q 007987 258 GINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHG-IVESLFRRFTENGMNEDLAYKN 336 (582)
Q Consensus 258 Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pA-lieAl~d~lVe~Gl~pe~Ay~~ 336 (582)
|.++.+++..+.+.++.+.++.+++.+|.. .....|.+.|.+. +++|++|+ +.-++.+.+.+.|... .++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~----~~~~~~~~hD~~~--a~~~~~ph~~~~~l~~~l~~~~~~~-~~~~~ 214 (735)
T PRK14806 142 NHKVILTPLAETDPAALARVDRLWRAVGAD----VLHMDVAHHDEVL--AATSHLPHLLAFSLVDQLANREDNL-DIFRY 214 (735)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHcCCE----EEEcCHHHHhHHH--HHhcchHHHHHHHHHHHHhhcCChh-HHHhh
Confidence 456778888888999999999999999974 1222344455555 69999999 6777788887777644 57788
Q ss_pred HHHHHHHHHHHHH
Q 007987 337 TVECITGIISKII 349 (582)
Q Consensus 337 ~~~ei~glia~lI 349 (582)
+.+.+.+ ++++.
T Consensus 215 a~~~f~~-~tRia 226 (735)
T PRK14806 215 AAGGFRD-FTRIA 226 (735)
T ss_pred hccchhc-ccccc
Confidence 7777654 45444
No 29
>PLN02256 arogenate dehydrogenase
Probab=99.61 E-value=1.1e-14 Score=151.45 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=124.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav-~~ADIVILaVPd~a 190 (582)
++|+|||+|+||+++++.|++. |.+|++.+++. ..+.+.+.|+.. ..+.++++ .++|+||+++|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999988 88877665543 246667778763 56777776 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEecCch---hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 191 ~~~Vl~eI-~~~Lk~GaiL~~a~G~~---i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
..++++++ .++++++++|+++.+++ +..+.. .++.+.+||++||+.+...-... -.+.+.+++..
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGG--------WAGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCccc--------cCCCeEEEecc
Confidence 99999998 68899999988777643 444544 45667899999998855541111 23456555432
Q ss_pred ----cCCCHHHHHHHHHHHHHhCCCccccccccccccc
Q 007987 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (582)
Q Consensus 267 ----qd~tgeale~alala~aiG~~~~iettf~~E~~s 300 (582)
.+.++++++.++.+++.+|+ +++..+.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 45577899999999999996 5777777776665
No 30
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.53 E-value=4.3e-13 Score=138.20 Aligned_cols=217 Identities=13% Similarity=0.145 Sum_probs=142.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----cCceecC----------CCcCCHHhh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-----~G~~~~d----------~t~~~~~Ea 175 (582)
+++|+|||+|+||.++|..|..+ |++|++.+++. +..+.+.+ .|....+ ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999988 98887766543 33333332 1210000 013567788
Q ss_pred hccCCeEEEeccchh--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcc
Q 007987 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (582)
Q Consensus 176 v~~ADIVILaVPd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~ 252 (582)
++++|+||+++|++. ...++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999875 456888898888888776 6888888777655 3445568999999999876
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCCHHH
Q 007987 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNEDL 332 (582)
Q Consensus 253 e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~pe~ 332 (582)
+. .. .+++....+++.++.+..++..+|.. .+.- ..|.-|- ++-..+.+++..+...+-+.|+++++
T Consensus 145 ---~~-l~-~i~~g~~t~~~~~~~v~~l~~~~G~~-----~v~~--~~d~~G~-i~nr~~~~~~~Ea~~l~~~g~~~~~~ 211 (311)
T PRK06130 145 ---IP-LV-EVVRGDKTSPQTVATTMALLRSIGKR-----PVLV--KKDIPGF-IANRIQHALAREAISLLEKGVASAED 211 (311)
T ss_pred ---Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCE-----EEEE--cCCCCCc-HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 23 22 35567778899999999999999974 1111 1111111 22233344455455555566789988
Q ss_pred HHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 007987 333 AYKNTVECI------TGIISKIISTQGMLAVYNS 360 (582)
Q Consensus 333 Ay~~~~~ei------~glia~lI~e~Gi~~m~d~ 360 (582)
.....-+.. .| .-+++...|+..+.+.
T Consensus 212 id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~~~ 244 (311)
T PRK06130 212 IDEVVKWSLGIRLALTG-PLEQRDMNGLDVHLAV 244 (311)
T ss_pred HHHHHHhcCCCCccCCC-HHHHhhhhccchHHHH
Confidence 777543321 23 3345555566444433
No 31
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.52 E-value=2e-12 Score=136.81 Aligned_cols=250 Identities=14% Similarity=0.159 Sum_probs=156.5
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCcc----cHHHHHHcCceecCC
Q 007987 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (582)
Q Consensus 112 kkIgIIG~Gsm--------------------G~AiA~nLrds~~~~g~G~~ViVg~r~~sk----s~~~A~~~G~~~~d~ 167 (582)
+||.|-|.||| |.++|.+|.+. |++|++++++..+ ..+...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777777776 88999999998 9998888775431 344566778764
Q ss_pred CcCCHHhhhccCCeEEEeccchh-HHHHHHHHHhcCCCCcEEEEecCchhh----hhhcccccCCCCCcEEEeccCCChh
Q 007987 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG----HLQSMGLDFPKNIGVIAVCPKGMGP 242 (582)
Q Consensus 168 t~~~~~Eav~~ADIVILaVPd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~i~----~~~~~~i~~p~dv~VI~v~Pngpg~ 242 (582)
..+..++++++|+||+++|+.. ..+++++|.+++++|++|++++.+... .+.. .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5678889999999999999988 678999999999999998877665432 2222 233222334454544444
Q ss_pred hHHHHHhhcccccCCCceEEE-----eeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhchHHHH-
Q 007987 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLGAVHGI- 315 (582)
Q Consensus 243 ~vR~ly~~G~e~~G~Gv~ali-----Av~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG~~pAl- 315 (582)
+. |. -+.|... + +.....++++++.+..+++++|.. ++... .+..... .+...+.+.
T Consensus 148 v~------Ga--e~g~l~V-m~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~------~g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VP------GT--PQHGHYV-IAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP------ADVVSAVADMGSLVTAVA 211 (342)
T ss_pred cc------cc--ccchheE-EeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC------HHHHHHHHHHHHHHHHHH
Confidence 31 00 0112222 2 233345788999999999999974 11111 1122221 233333332
Q ss_pred ---HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc-------hhHHHHH
Q 007987 316 ---VESLFRRFTENG-MNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY-------YPCMEIL 384 (582)
Q Consensus 316 ---ieAl~d~lVe~G-l~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~-------~p~~~~m 384 (582)
+--.+-.+.+.| .|++++.+.+.|++.| +++|+.++|+..|.+.+... +--+.+-+-.. .-..+++
T Consensus 212 ~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (342)
T PRK12557 212 LSGVLDYYSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNPE--LLLRSASSMHLLEKQKDLDAALEIL 288 (342)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCHH--HHhhhHhhCCcchhhhhHHHHHHHH
Confidence 222333444554 4556666789999988 99999999999999987752 22222211111 1236677
Q ss_pred HHHHHhccC
Q 007987 385 YECYEDVAA 393 (582)
Q Consensus 385 ~e~~~~I~s 393 (582)
+++++++..
T Consensus 289 ~~~~~~~~~ 297 (342)
T PRK12557 289 ENLDEDLLK 297 (342)
T ss_pred HHHHHHHhh
Confidence 777777643
No 32
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.51 E-value=1.7e-13 Score=138.99 Aligned_cols=187 Identities=21% Similarity=0.217 Sum_probs=124.4
Q ss_pred HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCC
Q 007987 126 QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205 (582)
Q Consensus 126 iA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~G 205 (582)
+|+.|+++ |..++| ++.+.+....+.|++.|+.. ....+ .++++++|+||||+|+....++++++.+++++|
T Consensus 1 ~A~aL~~~----g~~~~v-~g~d~~~~~~~~a~~~g~~~--~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKA----GPDVEV-YGYDRDPETLEAALELGIID--EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHT----TTTSEE-EEE-SSHHHHHHHHHTTSSS--EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TT
T ss_pred ChHHHHhC----CCCeEE-EEEeCCHHHHHHHHHCCCee--eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCC
Confidence 57888888 222565 56676777889999999873 22333 678999999999999999999999999999999
Q ss_pred cEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhC
Q 007987 206 SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG 285 (582)
Q Consensus 206 aiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG 285 (582)
++|+++.+++...++.-.-.+|.+++||.+|| +.|+. +..|.........|.++++++..+.+.++++.+++++..+|
T Consensus 73 ~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~G 150 (258)
T PF02153_consen 73 AIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALG 150 (258)
T ss_dssp SEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT
T ss_pred cEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCC
Confidence 99999999863322221114567899999999 33553 22333334445568999999999888899999999999999
Q ss_pred CCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcC
Q 007987 286 SPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENG 327 (582)
Q Consensus 286 ~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~G 327 (582)
+ +++.++..+|++.-.+. +..-+.+.-++...+.+.+
T Consensus 151 a-~~~~~~~eeHD~~~A~v----shlpH~~a~al~~~~~~~~ 187 (258)
T PF02153_consen 151 A-RVVEMDAEEHDRIMAYV----SHLPHLLASALANTLAELS 187 (258)
T ss_dssp --EEEE--HHHHHHHHHHH----THHHHHHHHHHHHHHHHHH
T ss_pred C-EEEEcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 7 56677777776653333 3333334555555454333
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.51 E-value=1.3e-11 Score=136.10 Aligned_cols=193 Identities=13% Similarity=0.090 Sum_probs=133.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH------------------HcC-ceecCCCcCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~------------------~~G-~~~~d~t~~~ 171 (582)
++||+|||+|.||.++|.+|..+ |++|++.++..++...... ..| +.. ..+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47899999999999999999998 9999888776443211100 012 332 467
Q ss_pred HHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHH
Q 007987 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly 248 (582)
+++++++||+|+.++|++.. ..++.++.+.++++++| +-++|+.+..+.+ .+...-.++..||+.|.+.
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 88999999999999998864 34778888888888765 4667887776654 3344457899999998876
Q ss_pred hhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchH-HHHHHHHHHHHHHcC
Q 007987 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAV-HGIVESLFRRFTENG 327 (582)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~-pAlieAl~d~lVe~G 327 (582)
+. -..++.+..++++.++.+..++.++|.. .+.-+...+-| +++-+ .+++..++...-+.|
T Consensus 146 -------~~--Lvevv~g~~t~~e~~~~~~~~~~~lG~~-----~v~~~k~~~gf----i~nrl~~a~~~EA~~L~~~g~ 207 (495)
T PRK07531 146 -------LP--LVELVGGGKTSPETIRRAKEILREIGMK-----PVHIAKEIDAF----VGDRLLEALWREALWLVKDGI 207 (495)
T ss_pred -------Cc--eEEEcCCCCCCHHHHHHHHHHHHHcCCE-----EEeecCCCcch----hHHHHHHHHHHHHHHHHHcCC
Confidence 22 2235667778899999999999999975 11111122222 33333 333345555556778
Q ss_pred CCHHHHHHHHHH
Q 007987 328 MNEDLAYKNTVE 339 (582)
Q Consensus 328 l~pe~Ay~~~~~ 339 (582)
+++++.....-+
T Consensus 208 ~s~~~id~~~~~ 219 (495)
T PRK07531 208 ATTEEIDDVIRY 219 (495)
T ss_pred CCHHHHHHHHhh
Confidence 999988775443
No 34
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.49 E-value=3.9e-12 Score=132.99 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=162.0
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCC
Q 007987 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (582)
Q Consensus 112 kkIgIIG~Gsm--------------------G~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~~A~~~G~~~~d~ 167 (582)
+||.|-|.||| |.+||.+|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 46777777776 88999999999 999988877533 2345677788875
Q ss_pred CcCCHHhhhccCCeEEEeccchhHH-HHHHHHHhcCCCCcEEEEecCch---hhhhhccccc-CCCCCcEEEeccC-CCh
Q 007987 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLD-FPKNIGVIAVCPK-GMG 241 (582)
Q Consensus 168 t~~~~~Eav~~ADIVILaVPd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~---i~~~~~~~i~-~p~dv~VI~v~Pn-gpg 241 (582)
+.+..++++++|+||+++|+..+. +|+..+.+++++|++|++++-+. ++++-+..+. -++|+.|...||- -|+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678999999999999999988875 78888999999999998887554 2222111222 3589999999993 355
Q ss_pred hhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhchHHH----HH
Q 007987 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLGAVHG----IV 316 (582)
Q Consensus 242 ~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG~~pA----li 316 (582)
+.-.+.|.-+ |.. +.-..-+++++++....+++.+|.. -|+ ...|+.+.. -.|-.+.+ .|
T Consensus 151 ~~~~~~~~~~------~~~--~~~~~~A~ee~i~~~~el~~~~~~~-----~~~--~pa~l~~~v~Dm~s~vta~~~~gi 215 (341)
T TIGR01724 151 TPQHGHYVIG------GKP--TAGKEMATEEQISKCVELAKSTGKK-----AYV--VPADVTSAVADMGSLVTAVALAGV 215 (341)
T ss_pred CCCCceeeec------ccc--ccccccCCHHHHHHHHHHHHHhCCC-----eee--cchhhcchhhhHHHHHHHHHHHHH
Confidence 5533344432 222 1224567899999999999999985 221 233455432 12222233 25
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007987 317 ESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 363 (582)
Q Consensus 317 eAl~d~lVe-~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~ 363 (582)
-.-++.+++ .|-|.+++-..+.+++. .++.++...|+..|.+.+..
T Consensus 216 l~y~~~~t~i~~ap~~~~~~~~~~~l~-~~a~l~~~~Gi~~~~~~l~p 262 (341)
T TIGR01724 216 LDYYYVGTQIINAPKEMIEKQILMTLQ-TMASLVETSGVEGMAKAINP 262 (341)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcCH
Confidence 566677754 69999999999999886 49999999999999998875
No 35
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.49 E-value=1.9e-13 Score=145.95 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=115.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|+|||+ |.||+++|+.|++. .|++|+ |.+.. |....+.++++++||+||||||+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~---------------d~~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA---------------DPGSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC---------------ccccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166764 44431 1113467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeecc
Q 007987 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (582)
Q Consensus 191 ~~~Vl~eI~~~---Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~q 267 (582)
..++++++.++ +++|++|+++.+++-..++. ..+.+.+||..||.. |+....+ .+|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPMa-G~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPMT-APPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCCC-CCCCCcc--------cCCCeEEEeCCC
Confidence 99999999875 89999999999997443332 123356799999943 5442222 357899888764
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccccccccccccc
Q 007987 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302 (582)
Q Consensus 268 d~tgeale~alala~aiG~~~~iettf~~E~~sDl 302 (582)
..+..+.++.+++.+|+ .++.++.++|++.-.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~~A 163 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRVMA 163 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHHHH
Confidence 34557889999999996 467777777666533
No 36
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.48 E-value=2e-12 Score=131.82 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----------HHHHHcCceec--------C-CCcCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~----------~~A~~~G~~~~--------d-~t~~~ 171 (582)
|++|+|||+|.||.++|..|..+ |++|++.+++.++.. +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 47899999999999999999998 988877665433211 23334442100 0 00234
Q ss_pred HHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHH
Q 007987 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly 248 (582)
.+ .+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.+ .++..-+++++||+.|.+.
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~----- 147 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPV----- 147 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCccc-----
Confidence 44 57899999999998766 67999999999999987 6889998887765 3444457999999999998
Q ss_pred hhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
..++. ++++...+.+..+.+..++..+|..
T Consensus 148 -------~~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 148 -------MKLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred -------CccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34564 6778889999999999999999975
No 37
>PLN02712 arogenate dehydrogenase
Probab=99.47 E-value=7.8e-13 Score=150.58 Aligned_cols=194 Identities=12% Similarity=0.062 Sum_probs=130.9
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhc-cCCeEEEe
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~-~ADIVILa 185 (582)
.+++ ++|||||+|+||+++|++|++. |++|++.++.. . .+.+.+.|+.. ..+.++++. ++|+||++
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 3566 8999999999999999999988 88887666652 2 25566778763 567888775 58999999
Q ss_pred ccchhHHHHHHHHHh-cCCCCcEEEEecCc---hhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceE
Q 007987 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGF---LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~-~Lk~GaiL~~a~G~---~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~a 261 (582)
||+....++++++.+ .+++|++|+++.+. .+..+.. .+|.++++|+.||+.....-+..|.. ......|.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~-- 506 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV-- 506 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc--
Confidence 999999999998875 68999999988655 3444444 56778899999997755431111111 00011121
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCC
Q 007987 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMN 329 (582)
Q Consensus 262 liAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~ 329 (582)
+........+..+..+.++..+|+ ++++++.++|++.-. .+..+|- .+...+++.|++
T Consensus 507 -~v~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~~A-----~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 507 -RIGSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWHAA-----GSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred -EeCCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHHH-----HHHHHHH---HHHHHHHHCCCc
Confidence 111222233556667899999996 577788777663311 2233333 445777788875
No 38
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.41 E-value=1.1e-11 Score=132.36 Aligned_cols=178 Identities=10% Similarity=0.036 Sum_probs=123.9
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccc
Q 007987 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (582)
Q Consensus 110 gikkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd 188 (582)
.+++|+||| +|.||+++|+.|++. |+.|.+.++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 348999999 999999999999999 99887766531 12456778899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
....++++++.+ +++|++|+++++++. ..+.. ..+ .+||..||...... .+ ..|...++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~--~~fvg~HPm~G~~~------~~----~~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHS--GPVLGLHPMFGPDV------GS----LAKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCC--CCEEeeCCCCCCCC------cc----cCCCEEEE--
Confidence 999999999988 999999999987642 23322 222 26999999554322 11 13344433
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH-HHHHHHHHHHcCCCHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI-VESLFRRFTENGMNEDLAYK 335 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl-ieAl~d~lVe~Gl~pe~Ay~ 335 (582)
....++++.+.++.++..+|+ .++.++..+|++.-.+ ++ .+|-+ .-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~a~----vs-hLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNMAF----IQ-ALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334466788999999999996 4666665555544222 33 34544 44555666667887776544
No 39
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.40 E-value=9.3e-12 Score=128.82 Aligned_cols=152 Identities=22% Similarity=0.179 Sum_probs=110.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
+||+|||+|+||.+||.||.+. |+.+.+++|+.++..+.+++.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 4899999999999999999999 9999999998777778888889886 67889999999999999998888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 192 ~-~Vl~---eI~~~Lk~GaiL~~a~G~~i~~~~~-~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
. +|+. .+.+.+++|+++++++-+....-.+ ....-..+..++ =+|-.-+.. .. -.|.-. |-+.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A-------~~GtLt-imvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GA-------AAGTLT-IMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hh-------hhCceE-EEeC
Confidence 5 5773 5999999999999987664221100 000011233333 234221111 11 134444 3334
Q ss_pred cCCCHHHHHHHHHHHHHhCCC
Q 007987 267 QDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~ 287 (582)
. +.++.+.++-+++.+|..
T Consensus 139 G--~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc
Confidence 4 688999999999999984
No 40
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.40 E-value=1.3e-11 Score=126.72 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=112.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceec--------CCCcCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G~~~~--------d~t~~~ 171 (582)
+++|+|||+|.||.++|.+|..+ |++|++.+++..+ .+. ..+.|.... .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48899999999999999999998 9998777665332 221 222231000 001233
Q ss_pred HHhhhccCCeEEEecc--chhHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHH
Q 007987 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (582)
Q Consensus 172 ~~Eav~~ADIVILaVP--d~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly 248 (582)
..+++++||+||+++| ++....++.++.+.++++++| +.++|+.+..+.+ ......+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 4467899999999999 444466888999999999987 4889998877765 3344468999999888876
Q ss_pred hhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
+.. ..++.+...+.+..+.+..++.++|..
T Consensus 149 -------~~l--veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 149 -------MKL--VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred -------Cce--EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 122 336667788999999999999999975
No 41
>PLN02712 arogenate dehydrogenase
Probab=99.39 E-value=3.6e-12 Score=145.21 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=118.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav-~~ADIVILaVPd~a 190 (582)
++|+|||+|+||+++|++|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ +++|+||++||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 88886666542 235677788764 56777755 56999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee-
Q 007987 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (582)
Q Consensus 191 ~~~Vl~eI~-~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv- 265 (582)
..++++++. +++++|++|+++..++-. .+.. .+|.+.+||..||+. |+.. ...| -.|.+.+++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999999877632 2333 456788999999965 4442 1111 1234454442
Q ss_pred ---ccCCCHHHHHHHHHHHHHhCCCccccccccccccc
Q 007987 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (582)
Q Consensus 266 ---~qd~tgeale~alala~aiG~~~~iettf~~E~~s 300 (582)
......+..+..+.+|..+|+ ++++++.+++++.
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~ 226 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKY 226 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH
Confidence 222223456777899999996 5667776665554
No 42
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.38 E-value=1.4e-12 Score=111.69 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=72.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEE-ecCCcccHHHHHHcCceecCCCcC-CHHhhhccCCeEEEecc
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G---~~ViVg-~r~~sks~~~A~~~G~~~~d~t~~-~~~Eav~~ADIVILaVP 187 (582)
||||||+|+||.+++++|.++ | .+|.+. .|+..+..+.+.+.++.. .. +..|+++++|+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999998 8 688756 666556566677888653 34 79999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-EecC
Q 007987 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~-~a~G 213 (582)
|+...++++++ +.+.++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888754 5554
No 43
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.34 E-value=4e-12 Score=120.19 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=101.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
|++|||||+|+||.++|++|.++ |++|.++++.. ...+...+.|... +.++.|+++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 99998877654 3456666778876 7899999999999999999855
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 191 ~-~~Vl~e--I~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
+ .+++.+ +.+.+++|+++++++-.... .+.+ ..-.+++.+|- +|-.-+.. .-+ .|.-.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~-------~g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAE-------EGTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHH-------HTTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccc-------ccceEEEc
Confidence 5 678887 99999999999988766432 2222 11234666663 34221221 112 24433233
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC
Q 007987 265 VHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~~ 287 (582)
.. +.++.+.++.+++.+|..
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEEE
T ss_pred -cC--CHHHHHHHHHHHHHHhCC
Confidence 33 468999999999999963
No 44
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.34 E-value=1.6e-11 Score=121.40 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=109.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------cCceecCCCcCCHHhhhccCCeEE
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-------~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
+||+||| .|+||.+++..|.++ |++|+++.|+.++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5799997 999999999999998 88888887765443332221 13210 001246678899999999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEE-EEecCchh-----------------hhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-----------------~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
+++|++.+.++++++.+.++. ++| ..+.|+.+ ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 655 46677765 22333 355557899999999988754
Q ss_pred HHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHh-CCC
Q 007987 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~ai-G~~ 287 (582)
. .. .+.+...++| .. ++++++.+.++...+ |..
T Consensus 150 ~-~~-----~~~~~~~~v~-Gd--d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 D-VD-----DEVDCDVLVC-GD--DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred C-CC-----CCCCCCEEEE-CC--CHHHHHHHHHHHHhcCCCC
Confidence 3 11 1334555444 32 456999999999999 863
No 45
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.32 E-value=3.6e-11 Score=123.62 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=101.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------------ceecCCCcCCHHhhh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G--------------~~~~d~t~~~~~Eav 176 (582)
|++|+|||+|+||.++|.+|.++ |++|.+.++.. +..+...+.| +.. ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 57899999999999999999998 99887776643 3334344432 221 45677888
Q ss_pred ccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEe-cCchhh-------hhhcccccCCC-CCcEEEeccCCChhhHHHH
Q 007987 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 177 ~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~-------~~~~~~i~~p~-dv~VI~v~Pngpg~~vR~l 247 (582)
+++|+||+++|+....++++++.+.++++++|+.. .|+... .+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 99999999999998889999999999999876644 477532 2222 2232 133556677654443
Q ss_pred HhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 007987 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 248 y~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~ 286 (582)
+.|.+.++.... .+.+..+.+..++...|.
T Consensus 143 --------~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIAS-TDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEEe-CCHHHHHHHHHHhCCCCE
Confidence 234333222222 256778888888888885
No 46
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.29 E-value=2.9e-10 Score=116.59 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=135.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------------------------Cceec
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~-------------------------G~~~~ 165 (582)
+++|+|||.|.||.++|..|..+ |++|++.+++.. ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 47999999999999999999988 998877766532 23333211 2221
Q ss_pred CCCcCCHHhhhccCCeEEEeccch--hHHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChh
Q 007987 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (582)
Q Consensus 166 d~t~~~~~Eav~~ADIVILaVPd~--a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~ 242 (582)
..+.+++++++|+||.++|.+ ...++++++.+.++++++|+ ..+++.+..+.+ ..+...+++..||-.|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 457888899999999999966 45678899999999999874 555665554443 233345799999977755
Q ss_pred hHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHH
Q 007987 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRR 322 (582)
Q Consensus 243 ~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~ 322 (582)
. .-..-+.++...+++.++.+.+++..+|...+ ...-+..+.+ +.=.+.+++..++ .
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv----~v~~d~pgfi----~nRi~~~~~~ea~-~ 205 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPI----VLKKEQPGYI----LNSLLVPFLSAAL-A 205 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE----EecCCCCCHh----HHHHHHHHHHHHH-H
Confidence 4 23334666788899999999999999997411 1100111111 1112233333333 3
Q ss_pred HHHcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 007987 323 FTENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSFS 362 (582)
Q Consensus 323 lVe~Gl-~pe~Ay~~---~~~ei~glia~lI~e~Gi~~m~d~vS 362 (582)
+++.|+ ++++--.. .+..-.| .-+++-..|++.+++...
T Consensus 206 l~~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~~ 248 (287)
T PRK08293 206 LWAKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNITS 248 (287)
T ss_pred HHHcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHHH
Confidence 467775 46543332 2221223 345666777766555543
No 47
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.29 E-value=1.1e-10 Score=120.60 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=123.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
+||+|||+|+||.+++++|.+. |++|.+.++.. + .+...+.|... +.+..++++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 3799999999999999999999 99887777653 2 34555677764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 192 -~~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.++- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56663 367778899999988876533 1211 11234777776 68444333 2233 4433333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhh-chHHHHHHHHHHHHHHcCCCHHHHHH
Q 007987 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILL-GAVHGIVESLFRRFTENGMNEDLAYK 335 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLs-G~~pAlieAl~d~lVe~Gl~pe~Ay~ 335 (582)
.. +.++++.++.+++.+|.....-...-.=....+.. +.++ ..+.++.|++ ..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~-N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVAN-QIIVALNIEAVSEAL-LFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 33 57889999999999997411111101111111111 1122 2233334443 234688999998774
No 48
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.29 E-value=2.1e-10 Score=118.49 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=103.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh---hccCCeEEEeccc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea---v~~ADIVILaVPd 188 (582)
++|+|||+|+||.+++++|.+. |++|.+++|+.+ ..+...+.|... ..+.+++ ++++|+||+++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 4799999999999999999999 999887766543 455566667653 3455554 4568999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
....++++++.+++++|++|++.+... ...... .-..+++++-....+....- -.|. + +.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~---~~~~g~~~vda~vsGg~~~a-----------~~G~-~-~~ 133 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKL---LKEKGIHLLDCGTSGGVWGR-----------ERGY-C-FM 133 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHH---HHhcCCeEEecCCCCCHHHH-----------hcCC-e-ee
Confidence 988899999999999999988776542 211111 12356777764443322221 1353 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 007987 265 VHQDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~ 286 (582)
+.. +.++.+.++.+++.+|.
T Consensus 134 ~gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 134 IGG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred eCC--CHHHHHHHHHHHHHhcC
Confidence 455 57899999999999996
No 49
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.26 E-value=1.2e-11 Score=129.90 Aligned_cols=163 Identities=17% Similarity=0.114 Sum_probs=117.6
Q ss_pred cCChhhhHHHHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCC--CCCcch----------------hHHH
Q 007987 392 AAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLG--PLHPFT----------------AGVY 453 (582)
Q Consensus 392 ~sG~far~~i~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lRa~~~~~~~g--~~~p~t----------------~gv~ 453 (582)
..|...|+...++. |.|.+= .+.|...-+.-+..-++-..+..+ -+-++| +|-.
T Consensus 130 gpG~~vR~~y~~G~------Gvp~l~--av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~ 201 (335)
T PRK13403 130 SPGHLVRRVFQEGN------GVPALV--AVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGV 201 (335)
T ss_pred CCChHHHHHHHcCC------CceeEE--EEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHH
Confidence 57999999888875 667632 222322222222222222222211 123333 5556
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccc-cccccchhHHH---HHHHHhhh
Q 007987 454 AALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS-RKWAPRFDYIL---TQQALVAV 529 (582)
Q Consensus 454 ~~~~~a~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~-~~~~~~~~~~~---~~~~~~~~ 529 (582)
.+++.|++|+|.+.|++|..+++|++.|. ..+.+||.++|+++|+.+||+||+||. ..|.+.+++.. +.+++..|
T Consensus 202 ~~li~~gfe~lveaGy~pe~Ayfe~~he~-kli~dli~e~G~~~m~~~~S~taeyG~~~~g~~ii~~~~k~~m~~~l~~i 280 (335)
T PRK13403 202 TALVKAGFETLTEGGYRPEIAYFECLHEL-KLIVDLMYEGGLTNMRHSISDTAEFGDYVTGSRIVTDETKKEMKRVLTEI 280 (335)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhhCcHHhcCCccCCCcccCHHHHHHHHHHHHHh
Confidence 66688999999999999999999999998 999999999999999999999999999 55666667666 67888888
Q ss_pred cCCCcc-------------chhHHHhhhcChHHHHHHHhhccCCcce
Q 007987 530 DNDAPI-------------NGDLISNFLSDPVHGAIEVCAQLRPTVD 563 (582)
Q Consensus 530 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (582)
++|+-. ...+....++||+++.=+.-.+|+|-++
T Consensus 281 q~g~fa~~~~~e~~~g~~~~~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 281 QQGEFAKKWILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred cCCHHHHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 888443 4466777889999988777777776543
No 50
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.26 E-value=3.3e-10 Score=116.09 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cC-------------ceecC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-----------~G-------------~~~~d 166 (582)
+++|+|||.|.||.++|..|.++ |++|++.+++.+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 47899999999999999999998 999887766533 2333221 11 121
Q ss_pred CCcCCHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhh
Q 007987 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 167 ~t~~~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~ 243 (582)
..+.++++++||+||.++|++... .++.++.+.++++++| +.++.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 356778999999999999988753 5778898999999977 5677777666544 2333346888888766544
Q ss_pred HHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 244 vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
+--..++.+...+.+.++.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233346667788999999999999999974
No 51
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.26 E-value=1.2e-10 Score=120.16 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=123.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
|++|+|||+|+||.++|.+|.+. |++|.+++++.. ..+...+.|... ..+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999998 998887776544 355555667653 5688899999999999999986
Q ss_pred -HHHHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 007987 191 -QADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 191 -~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
...++. .+.+.+++|+++++.+-+... .+.+ .....++.++ =+|-.-+.. .=+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 455664 477888999998877655422 2211 0122456655 456432222 111 3444433
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007987 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNEDLAYKN 336 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~ 336 (582)
. .. +.+..+.+..+++.+|.....-...-.-....+..- .++++..+++--.+..+.+.|++++..+..
T Consensus 137 ~-gg--~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N-~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~ 205 (296)
T PRK15461 137 A-GG--TAEQVERATPILMAMGNELINAGGPGMGIRVKLINN-YMSIALNALSAEAAVLCEALGLSFDVALKV 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 33 568899999999999974111001000011111110 233333333333445567899998876543
No 52
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.25 E-value=1.2e-10 Score=119.43 Aligned_cols=152 Identities=17% Similarity=0.236 Sum_probs=112.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--------------cCceecC---------C
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~--------------~G~~~~d---------~ 167 (582)
+++|+|||+|.||.++|..|..+ |++|++.+++. +..+.+.+ .|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999998 99887766553 33332211 1211000 0
Q ss_pred CcCCHHhhhccCCeEEEeccchh--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhH
Q 007987 168 TLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (582)
Q Consensus 168 t~~~~~Eav~~ADIVILaVPd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~v 244 (582)
...+. ++++++|+||+++|++. ..++++++.+.++++++| +.++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 57899999999999886 356888999999999876 4677887776655 34445679999999999882
Q ss_pred HHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 245 R~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.++.. ..++.++++..+.+..++..+|..
T Consensus 152 ------------~~vEv--~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIEV--VRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEEE--eCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34443 468888999999999999999975
No 53
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.24 E-value=2.1e-10 Score=118.52 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=104.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeccc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~---ADIVILaVPd 188 (582)
++|||||+|+||.++|++|.+. |++|++++++.+ ..+.+.+.|... ..++++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999998 998887766543 345556678764 5688888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..++.++ =+|-.-+.. .= -.|. . +-
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~a-------~~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---GL-------RNGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---HH-------hcCC-e-EE
Confidence 8 667889999999999999998865532 22211 1 112456664 445332221 01 1355 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 007987 265 VHQDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~ 286 (582)
+.. ++++.+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAP 154 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcC
Confidence 455 56789999999999996
No 54
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.23 E-value=4.1e-10 Score=115.33 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=120.8
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHH
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~ 192 (582)
+|+|||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..++++++|+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999998 99988776654 4456666777764 567889999999999999987554
Q ss_pred -HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 193 -~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
.++ +.+.+.+++|++|++.+..... .+.+ ....+++.++- +|-. +... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEEe-
Confidence 455 3477888999998887665432 2222 01124677775 5732 2211 111 24444333
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh--hhhchHHH-HHHHH---HHHHHHcCCCHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER--ILLGAVHG-IVESL---FRRFTENGMNEDLAYKN 336 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq--vLsG~~pA-lieAl---~d~lVe~Gl~pe~Ay~~ 336 (582)
.. +++..+.+..++..+|... +.. ..... ++. ++.+.+.+ .++++ +..+.+.|++++..++.
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~~-~~~---g~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~ 203 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKNI-VLV---GGNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQA 203 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCCe-EEe---CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 4788999999999999741 111 00011 111 23333333 23333 44456889999877754
No 55
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=1.3e-10 Score=120.97 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=100.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHHhhhccCCe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~--------G~~~~d--~t~~~~~Eav~~ADI 181 (582)
++|+|||+|+||.++|.+|.+. |++|.++.|+..+ .+...+. |..... ....+++++++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7899999999999999999998 9998887775332 2323322 311000 014578888899999
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEE-EEecCch-----hhhhhcccc--cCCCCCcEEEeccCCChhhHHHHHhhccc
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-----i~~~~~~~i--~~p~dv~VI~v~Pngpg~~vR~ly~~G~e 253 (582)
||+++|+....++++ .++++.+| ..+.|+. ...+.+ .+ ....++ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~~----~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHHH----hcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 999999997666654 45667654 4666764 222222 01 011222 456778765554
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh
Q 007987 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER 306 (582)
Q Consensus 254 ~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq 306 (582)
+.|.+.+... ...+.+..+.+..++...|.. -....|+.+.+
T Consensus 142 --~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~--------v~~~~di~g~~ 183 (328)
T PRK14618 142 --ARFLPAATVV-ASPEPGLARRVQAAFSGPSFR--------VYTSRDRVGVE 183 (328)
T ss_pred --HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEE--------EEecCCccchh
Confidence 3455442222 223567788889999888853 22344666643
No 56
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.19 E-value=1.3e-09 Score=112.95 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=123.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G~~~~d---------~t~~ 170 (582)
|++|+|||.|.||.++|.+|.++ |++|++.+++.. ..+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999887776532 2232 2234531000 1246
Q ss_pred CHHhhhccCCeEEEeccchh--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHH
Q 007987 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a--~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~l 247 (582)
++.++++++|+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||-.|.+..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3557778877766665553 334555554544 34445579999997775541
Q ss_pred HhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcC
Q 007987 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENG 327 (582)
Q Consensus 248 y~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~G 327 (582)
.. ..++++...+.+.++.++.++..+|...+. ....... | ++--...+++..++..+-+.|
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~~v~----v~~~~~G-~---i~nrl~~a~~~EA~~l~~~g~ 209 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQSPVR----LRREIDG-F---VLNRLQGALLREAFRLVADGV 209 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCEEEE----ecCCCcc-H---HHHHHHHHHHHHHHHHHHcCC
Confidence 11 225667778899999999999999974110 1001111 1 111122234444444455667
Q ss_pred CCHHHHHHHH
Q 007987 328 MNEDLAYKNT 337 (582)
Q Consensus 328 l~pe~Ay~~~ 337 (582)
+++++.....
T Consensus 210 ~~~~~id~~~ 219 (308)
T PRK06129 210 ASVDDIDAVI 219 (308)
T ss_pred CCHHHHHHHH
Confidence 8888876643
No 57
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.19 E-value=3.4e-11 Score=111.12 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=73.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
.+|+|||.|+.|.++++.|.+. |+.|.....++..+.+++.. +.. +....+..|+++++|+|||+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~--~~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAA--FIG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCccccccccc--ccc-cccccccccccccCCEEEEEechHHH
Confidence 7899999999999999999999 98764333333334444433 221 22356778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhcccccCCCCCcEEEecc
Q 007987 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (582)
Q Consensus 192 ~~Vl~eI~~~--Lk~GaiL~~a~G~~-i~~~~~~~i~~p~dv~VI~v~P 237 (582)
.++.++|... +++|++|++++|-. ..-++- .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999887 89999999999864 222211 0124667777887
No 58
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.18 E-value=6e-10 Score=114.32 Aligned_cols=145 Identities=21% Similarity=0.139 Sum_probs=103.7
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh-HHHH
Q 007987 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (582)
Q Consensus 116 IIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a-~~~V 194 (582)
|||+|+||.++|++|.++ |++|++++++.+ ..+...+.|... ..++.++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999998 999888776544 356666778764 5688999999999999999855 4678
Q ss_pred H---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccC
Q 007987 195 Y---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (582)
Q Consensus 195 l---~eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd 268 (582)
+ +.+.+.+++|++|++.+++... .+.+ .....+++++- +|-.-+.. ..+. |...+++ ..
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~--~~~~~g~~~vd-aPv~Gg~~---~a~~-------g~l~~~~-gg- 134 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMD-APVSGGVG---GARA-------GTLTFMV-GG- 134 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-CCCCCCHH---HHhh-------CcEEEEE-CC-
Confidence 7 5788899999999988887643 2222 11224677765 36332222 2333 3444333 33
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 007987 269 VDGRATNVALGWSVALGSP 287 (582)
Q Consensus 269 ~tgeale~alala~aiG~~ 287 (582)
+.+..+.+..++..+|..
T Consensus 135 -~~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 135 -VAEEFAAAEPVLGPMGRN 152 (288)
T ss_pred -CHHHHHHHHHHHHHhcCC
Confidence 457889999999999974
No 59
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.17 E-value=1e-09 Score=113.48 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=105.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc---CCeEEEeccc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~---ADIVILaVPd 188 (582)
++|||||+|+||.++|++|.+. |++|++++++.+ ..+.+.+.|+.. ..+++|+++. +|+||+++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4799999999999999999998 999888776543 345556678775 5678888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
. ...++++.+.+.+++|++|++.+.... ..+.+ ..-..++.++- +|..-+..- . -.|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~----a------~~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG----L------ERGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH----H------hcCC-eEE-
Confidence 8 667788889999999998887654331 11211 11235777774 775433321 0 1354 433
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 007987 265 VHQDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~ 286 (582)
+.. +.++.+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 343 57889999999999997
No 60
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.17 E-value=6.4e-10 Score=114.08 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=109.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec--------C-CCcC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-----------~G~~~~--------d-~t~~ 170 (582)
+++|+|||.|.||.++|.+|..+ |++|++.+++.. ..+.+.+ .|.... . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 999887776533 2333221 232100 0 0134
Q ss_pred CHHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHH
Q 007987 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~l 247 (582)
++ +.++++|+||.++|.+.+ ..++++|.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 457899999999997643 467889999999999874 788888776655 23333578888987777762
Q ss_pred HhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 248 y~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.++ - +.++...+.+..+.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233 3 4556778899999999999999974
No 61
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.16 E-value=7.5e-11 Score=124.40 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccccccccc-hhHHH---HHHH
Q 007987 450 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPR-FDYIL---TQQA 525 (582)
Q Consensus 450 ~gv~~~~~~a~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~~-~~~~~---~~~~ 525 (582)
.|-.++++.+++|+|.+.|++|.++++|++.|. ..+.+||.++|+++|+.+||+||+||.+.|-|| +++.. +.++
T Consensus 200 ~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~-k~i~dl~~~~g~~~m~~~~s~ta~~g~~~~~~~~~~~~~~~~m~~~ 278 (330)
T PRK05479 200 CGGLTELIKAGFETLVEAGYQPEMAYFECLHEL-KLIVDLIYEGGIANMRYSISNTAEYGDYVSGPRVITEETKKEMKEV 278 (330)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcCcHhhcCccccCCcccCHHHHHHHHHH
Confidence 344456788999999999999999999999997 899999999999999999999999999887776 44444 6778
Q ss_pred HhhhcCCCc-------------cchhHHHhhhcChHHHHHHHhhccCCcc
Q 007987 526 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTV 562 (582)
Q Consensus 526 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (582)
+..|++|+- ....+....++||++..=+.-..|+|-.
T Consensus 279 ~~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~lr~~~~~~ 328 (330)
T PRK05479 279 LKDIQSGEFAKEWILENKAGRPTFKALRREEAEHPIEKVGAKLRAMMPWI 328 (330)
T ss_pred HHHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHhcccc
Confidence 888888843 3556667788999988777666666643
No 62
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.15 E-value=1.7e-09 Score=110.85 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=101.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|+|||+|.||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+.+++++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNP-EAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 98887665543 3355566677664 56788999999999999997766
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
. .++ +.+.+.+++|++|++++.+... .+.+ . ....++.++ -+|-.-+... . -.|...++.
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~-d~pv~g~~~~----a------~~g~l~i~~ 138 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEML-DAPVSGGEPK----A------IDGTLSVMV 138 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEE-EcCCCCCHHH----H------hhCcEEEEE
Confidence 4 455 3578889999999888766532 2222 0 112355554 2352211110 0 124434333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC
Q 007987 265 VHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~~ 287 (582)
.. +.+..+.+..+++.+|..
T Consensus 139 -gg--~~~~~~~~~~~l~~~~~~ 158 (296)
T PRK11559 139 -GG--DKAIFDKYYDLMKAMAGS 158 (296)
T ss_pred -CC--CHHHHHHHHHHHHHhcCC
Confidence 33 468899999999999974
No 63
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.13 E-value=1.1e-09 Score=121.17 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=105.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHHhhhcc---CCeEEE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~---~G~~~~d~t~~~~~Eav~~---ADIVIL 184 (582)
+.+|||||+|.||.+||+||.+. |++|.|++|+.++..+.... .|... -..+.+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 36799999999999999999999 99999998876554333321 14320 0015688888876 999999
Q ss_pred eccchhHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCce
Q 007987 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (582)
Q Consensus 185 aVPd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ 260 (582)
++|+.... +|++.+.+.|++|++|++.+-.... ...+ ..-.+++.++ -+|-.-+..- . -.|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fl-dapVSGG~~g------A----~~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYL-GMGVSGGEEG------A----RNGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-eCCCcCCHHH------h----cCCC-
Confidence 99987765 5888899999999999988654311 1111 1123567766 5663322221 0 1454
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCC
Q 007987 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 261 aliAv~qd~tgeale~alala~aiG~ 286 (582)
+ +-+.. +.++++.++-+++.+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 45565 67899999999999996
No 64
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.11 E-value=4.6e-09 Score=110.77 Aligned_cols=204 Identities=14% Similarity=0.144 Sum_probs=126.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---------ceecC--CCcCCHHhhhccC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G---------~~~~d--~t~~~~~Eav~~A 179 (582)
++||+|||.|+||.++|..|.+. | +++++.++ +...+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37899999999999999999988 7 45455443 22233333322 11000 0134677889999
Q ss_pred CeEEEeccchhHHHHHHHHHhcCCCCc-EEEEecCchh-------hhhhcccccCCCCCcEEEeccCCChhhHHHHHhhc
Q 007987 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i-------~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G 251 (582)
|+||+++|.+...+++++|.+++++++ +|+...|+.. ..+.+ .+|....+++..|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998886 4578889864 24443 3343334567888776655
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH---HHHHHHHHHHcCC
Q 007987 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI---VESLFRRFTENGM 328 (582)
Q Consensus 252 ~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl---ieAl~d~lVe~Gl 328 (582)
+.|.++.+.+... +.+ .++.+.+.+... .|.-+...|+.+.+ ++|.+--. .-.+.+ ++..|-
T Consensus 148 ----~~g~~t~~via~~-~~~---~~~~v~~lf~~~-----~~~v~~s~Di~gve-~~~alkNv~aia~G~~~-g~~~g~ 212 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQH---LATRLSPLFRTR-----RFRVYTTDDVVGVE-MAGALKNVFAIAVGMGY-SLGIGE 212 (341)
T ss_pred ----HcCCCeEEEEEeC-CHH---HHHHHHHHhCCC-----CEEEEEcCchHHHH-HHHHHHHHHHHHHHHHH-HhcCCc
Confidence 4577664444332 333 344555555543 44556778888876 66666542 223333 335564
Q ss_pred CHHHH-HHHHHHHHHHHHHHHH
Q 007987 329 NEDLA-YKNTVECITGIISKII 349 (582)
Q Consensus 329 ~pe~A-y~~~~~ei~glia~lI 349 (582)
...-| ...+++|+.. +++.+
T Consensus 213 n~~aali~~~~~E~~~-~~~a~ 233 (341)
T PRK12439 213 NTRAMVIARALREMTK-LGVAM 233 (341)
T ss_pred hHHHHHHHHHHHHHHH-HHHHh
Confidence 44422 3356666654 44333
No 65
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.11 E-value=1.2e-09 Score=108.62 Aligned_cols=155 Identities=20% Similarity=0.168 Sum_probs=105.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~-~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
||+|+|||.|+||.++|+.|.+. |++|+++.++.+++.+.+. ..+... +..+++++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 9999999887665554433 334332 2568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC-----ch-------------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhc
Q 007987 190 AQADNYEKIFSCMKPNSILGLSHG-----FL-------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G-----~~-------------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G 251 (582)
.+.++++++...+. |++|+++.- +. -..+++ .+|. -+||..-=+.+... +.++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~-akVVkAFn~i~a~~----l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPG-AKVVKAFNTIPAAV----LADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCC-cchhhhhcccCHHH----hccC
Confidence 99999999998886 888875531 11 011111 2222 24443333333333 3332
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 252 ~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
. ..+.....++| .. +.++++.+.++.+.+|..
T Consensus 143 ~-~~~~~~~v~va-gD--D~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 A-KPGGRRDVLVA-GD--DAEAKAVVAELAEDIGFR 174 (211)
T ss_pred C-CcCCceeEEEe-cC--cHHHHHHHHHHHHhcCcc
Confidence 2 11112333334 33 678999999999999875
No 66
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.08 E-value=2.6e-09 Score=117.65 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=102.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHHhhhc---cCCeEEE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~---~G~~~~d~t~~~~~Eav~---~ADIVIL 184 (582)
|.+|||||+|+||.++|++|.++ |++|.+++|+.++..+.... .|... ....+++|+++ ++|+||+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99998888765443222221 25321 12568888886 4899999
Q ss_pred eccchh-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCc
Q 007987 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (582)
Q Consensus 185 aVPd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv 259 (582)
++|+.. ..++++++.|+|++|++|++..... ...... .-.+++.++ -+|-.-|.. .=+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHH---HHh-------cCC
Confidence 877664 5678999999999999998876432 111111 223577766 455222222 111 344
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 260 ~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
+ +-+.. +.++.+.++-+++++|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 55555 578999999999999974
No 67
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.07 E-value=3.6e-09 Score=116.43 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=102.0
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---C--ceecCCCcCCHHhhh---ccCCeEEE
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~---G--~~~~d~t~~~~~Eav---~~ADIVIL 184 (582)
.|||||+|+||.+||+||.++ |++|++++|+.++. +...+. | +.. ..++++++ +++|+||+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99998888865553 333333 2 332 45677766 46899999
Q ss_pred eccc-hhHHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCc
Q 007987 185 LISD-AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (582)
Q Consensus 185 aVPd-~a~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv 259 (582)
++|+ +...++++++.++|++|++|++.+-.. ...... .-.+++.+|-+...| |.. .=+ .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsG-G~~---gA~-------~G~ 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSG-GEE---GAR-------KGP 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCC-CHH---HHh-------cCC
Confidence 9998 556779999999999999999886432 112111 224578877544443 222 011 343
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 260 ~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
+ +-+.. +.++.+.++-+++++|..
T Consensus 136 -~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 -S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 4 44555 578999999999999974
No 68
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=1.3e-08 Score=107.18 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=111.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC-----CCcCCHHh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A-----------~~~G~~~~d-----~t~~~~~E 174 (582)
+++|+|||.|.||.++|..+..+ |++|++.++.... .+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999998 9999887765321 2211 122221100 11457889
Q ss_pred hhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhc
Q 007987 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (582)
Q Consensus 175 av~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G 251 (582)
++++||+|+-++|..... .++.+|...++++++|. -++++.+..+.+ .....-+++.+||--|.+.+
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~------- 149 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLL------- 149 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccC-------
Confidence 999999999999977653 58889999999999774 456776665544 23334579999998888873
Q ss_pred ccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 252 KEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 252 ~e~~G~Gv~al-iAv~qd~tgeale~alala~aiG~~ 287 (582)
+.+ +.++..++++.++.+.+++..+|..
T Consensus 150 --------pLVEVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 150 --------PLVEVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred --------ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 321 4567788999999999999999964
No 69
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.03 E-value=2.5e-08 Score=110.78 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcC-------------ceec
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G-------------~~~~ 165 (582)
.+++|+|||+|.||..||.++..+ |++|++.+++.+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 458999999999999999999999 9999887765432 333 24455 232
Q ss_pred CCCcCCHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChh
Q 007987 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (582)
Q Consensus 166 d~t~~~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~ 242 (582)
..++++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.+ .....-+++.+|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 456655 56999999999987764 3677888888899988 5778887766654 222334688899988888
Q ss_pred hHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 243 ~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.+ ...- +..+...+.+.++.+..+++.+|..
T Consensus 151 v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 151 LM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred cC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 72 1222 4556678899999999999999975
No 70
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.99 E-value=1.7e-08 Score=108.84 Aligned_cols=197 Identities=15% Similarity=0.119 Sum_probs=117.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-------------------HcC-ceecCCCcCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~-------------------~~G-~~~~d~t~~~ 171 (582)
++|+|||+|.||.++|.+|.+. |++|++.+++..+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 4799999999999999999998 9998766654332 22211 123 332 356
Q ss_pred HHhhhccCCeEEEeccchh----------HHHHHHHHHhcCCCCcEEEEecCchhh---hh-h---cccccCCCCCc-EE
Q 007987 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HL-Q---SMGLDFPKNIG-VI 233 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a----------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~~-~---~~~i~~p~dv~-VI 233 (582)
..++++++|+||+++|+.. ...+++.|.+++++|++|++.+++... .+ . +.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 566777899999999998877754211 11 1 10000111233 25
Q ss_pred EeccCC--ChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhC-CCccccccccccccccchhhhhhhc
Q 007987 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERILLG 310 (582)
Q Consensus 234 ~v~Png--pg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG-~~~~iettf~~E~~sDlfgEqvLsG 310 (582)
..+|.. +|..+.+.+. .+.++. . .++++.+.+..++..++ ...+..++. ..-+.-. .+.+
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~K----l~~N 212 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIK----LAEN 212 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHH----HHHH
Confidence 677743 2222211111 223233 3 36789999999999997 332222221 1111111 3344
Q ss_pred hH----HHHHHHHHHHHHHcCCCHHHHHHH
Q 007987 311 AV----HGIVESLFRRFTENGMNEDLAYKN 336 (582)
Q Consensus 311 ~~----pAlieAl~d~lVe~Gl~pe~Ay~~ 336 (582)
.. -+++-.+...+.+.|+++++.+..
T Consensus 213 ~~~a~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 213 TFRAVKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44 445666677777888888876543
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=98.97 E-value=1.2e-08 Score=124.54 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=123.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
+++|||||+|+||.+||.+|.+. |++|.+++++..+ .+...+.|... ..++.++++++|+||+++|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9998887765433 44455667654 5788999999999999999554
Q ss_pred -HHHHHH---HHHhcCCCCcEEEEecCchhhh---hhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 007987 191 -QADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 191 -~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~~---~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
..+|+. .+.+.+++|+++++.+-..... +.+....-..++.++ =+|-..+... - ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---h-------hcCCceEE
Confidence 456762 4778899999998876554222 211000011466655 4564433331 1 24444433
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccc-cccccccccccchhhhhhhchHHHH-HHHHH---HHHHHcCCCHHHHHHHH
Q 007987 264 AVHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYRSDIFGERILLGAVHGI-VESLF---RRFTENGMNEDLAYKNT 337 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~~~i-ettf~~E~~sDlfgEqvLsG~~pAl-ieAl~---d~lVe~Gl~pe~Ay~~~ 337 (582)
+ .. +.+.++.++.+++.+|....+ -...-.-.... ++-+.+-+. +.++. ..+.++|++++..++..
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~K-----L~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVK-----MVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 467899999999999974111 00000000111 222333221 33333 45568999999887753
No 72
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=4.3e-08 Score=101.73 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=66.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|+|||+|+||.++|+.|.++ |++|.++.|+.. .+++++++++|+||+++|+..+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECChHHH
Confidence 7899999999999999999999 999988776531 2567888999999999999988
Q ss_pred HHHHHHHHhc-CCCCcEEEEec-Cc
Q 007987 192 ADNYEKIFSC-MKPNSILGLSH-GF 214 (582)
Q Consensus 192 ~~Vl~eI~~~-Lk~GaiL~~a~-G~ 214 (582)
.++++++.++ ++++++|+++. |+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 8999988774 78888776543 44
No 73
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=5.7e-08 Score=104.06 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=128.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhh-hhhcCCceEEEEecCCc---ccH-HHHHHc--------CceecCC--CcCCHH
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGS---RSF-AEARAA--------GFTEENG--TLGDIY 173 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~-~~~g~G~~ViVg~r~~s---ks~-~~A~~~--------G~~~~d~--t~~~~~ 173 (582)
.+.++|+|||.|++|.|+|..|.++- +...+|++|.++.|+.. +.. +.-.+. |+...+. ...|+.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 34368999999999999999999870 00001267777666532 111 111111 1111000 135678
Q ss_pred hhhccCCeEEEeccchhHHHHHHHHHh--cCCCCc-EEEEecCchhh---------hhhcccccCCCCCcEEEeccCCCh
Q 007987 174 ETISGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGMG 241 (582)
Q Consensus 174 Eav~~ADIVILaVPd~a~~~Vl~eI~~--~Lk~Ga-iL~~a~G~~i~---------~~~~~~i~~p~dv~VI~v~Pngpg 241 (582)
++++++|+||++||++...++++++.+ ++++++ +|+.+.|+... .+.+ .++..+- +..=|+.+.
T Consensus 89 eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~~-~LsGPs~A~ 164 (365)
T PTZ00345 89 EAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPCC-ALSGANVAN 164 (365)
T ss_pred HHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCeE-EEECCCHHH
Confidence 899999999999999999999999998 888776 45688888532 1111 1222222 234454433
Q ss_pred hhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH--HHHH
Q 007987 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI--VESL 319 (582)
Q Consensus 242 ~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl--ieAl 319 (582)
.+ ..|.|+.+++... ..+.+..+.+.+... .|.-.+-.|+.|-+ |||.+--+ |-++
T Consensus 165 Ev------------a~~~pt~~vias~----~~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE-l~galKNviAIa~G 222 (365)
T PTZ00345 165 DV------------AREEFSEATIGCE----DKDDALIWQRLFDRP-----YFKINCVPDVIGVE-VCGALKNIIALAAG 222 (365)
T ss_pred HH------------HcCCCcEEEEEeC----CHHHHHHHHHHhCCC-----cEEEEEcCCcccch-hhHHHHHHHHHHHH
Confidence 33 2466665555442 234555566666654 55566778899977 88888765 3344
Q ss_pred HHHHHHcCCCHHHHHH-HHHHHHHHHHHHHH
Q 007987 320 FRRFTENGMNEDLAYK-NTVECITGIISKII 349 (582)
Q Consensus 320 ~d~lVe~Gl~pe~Ay~-~~~~ei~glia~lI 349 (582)
.=.+...|..-.-|+. .++.||.. +++.+
T Consensus 223 i~dGl~~G~N~kaalitrgl~Em~~-l~~a~ 252 (365)
T PTZ00345 223 FCDGLGLGTNTKSAIIRIGLEEMKL-FGKIF 252 (365)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHH-HHHHh
Confidence 3334456665555544 57777754 44444
No 74
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.93 E-value=5.6e-08 Score=100.42 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G~~~~d---------~t~~ 170 (582)
+++|||||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47899999999999999999998 9999887765432 222 3334432000 0134
Q ss_pred CHHhhhccCCeEEEeccchhHH--HHHHHHHhcC-CCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHH
Q 007987 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~L-k~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ 246 (582)
+. +.++++|+||-++|.+... +++.++...+ +++++|. -++++.+..+.. .....-+++.+|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988774 4777888877 8899875 566776665544 22223468999998888873
Q ss_pred HHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHH-HhCCC
Q 007987 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSP 287 (582)
Q Consensus 247 ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~-aiG~~ 287 (582)
+..- +.++...+++.++.+..++. .+|..
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 2333 56688889999999999988 59974
No 75
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.93 E-value=3.5e-08 Score=109.61 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=109.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G~~~~d---------~t~~ 170 (582)
+++|+|||.|.||..||.++..+ |++|++.+++.++ .+. ..+.|..... ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 9999888776433 222 2334421000 0145
Q ss_pred CHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHH
Q 007987 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~l 247 (582)
++++ +.+||+||.++|+.... .++.++...++++++|. .++++.+..+.+ ......+++.+|.--|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6655 56999999999976553 47788888888888774 667777665443 23344578999998888873
Q ss_pred HhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 248 y~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
...- +..+...+++.++.+..+++.+|..
T Consensus 151 ----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4557788899999999999999975
No 76
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=1.7e-07 Score=97.69 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=101.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--Cce------ecCC--CcCCHHhhh-ccCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~--G~~------~~d~--t~~~~~Eav-~~AD 180 (582)
++|+|||.|+||.++|..|.++ |.+|.+..|+. +..+.-.+. +.. ..+. ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNH-TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH-HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 98887766643 222222221 111 0000 123555665 5899
Q ss_pred eEEEeccchhHHHHHHHHHh-cCCCCc-EEEEecCchh-------hhhhcccccCCCCCcE-EEeccCCChhhHHHHHhh
Q 007987 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGV-IAVCPKGMGPSVRRLYVQ 250 (582)
Q Consensus 181 IVILaVPd~a~~~Vl~eI~~-~Lk~Ga-iL~~a~G~~i-------~~~~~~~i~~p~dv~V-I~v~Pngpg~~vR~ly~~ 250 (582)
+||++||++...++++++.+ ++++++ +|++..|+.. ..+.. .+|.. ++ +.. +|+... ..
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~---~~~~~-~~~~~~---Gp~~a~-~~--- 142 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNE---ILPNN-PIAILS---GPSFAK-EI--- 142 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHH---HcCCC-ceEeec---CCcHHH-HH---
Confidence 99999999999999999998 888776 5668888842 12222 22322 22 222 444221 11
Q ss_pred cccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchH
Q 007987 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAV 312 (582)
Q Consensus 251 G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~ 312 (582)
+.+.+..+.... ...+.+..+++.++.. .|.-+...|+.+.+ +++.+
T Consensus 143 -----~~~~~~~~~~~~----~~~~~~~~l~~~l~~~-----~~~~~~~~Di~g~~-~~k~~ 189 (326)
T PRK14620 143 -----AEKLPCSIVLAG----QNETLGSSLISKLSNE-----NLKIIYSQDIIGVQ-IGAAL 189 (326)
T ss_pred -----HcCCCcEEEEec----CCHHHHHHHHHHHCCC-----CeEEEecCcchhhh-hHHHH
Confidence 122333233322 1224667788888875 55566777888875 34433
No 77
>PLN02858 fructose-bisphosphate aldolase
Probab=98.88 E-value=3.2e-08 Score=120.86 Aligned_cols=191 Identities=16% Similarity=0.111 Sum_probs=124.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|||||+|+||..||.||.+. |++|.+++++.++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888776444 45556678775 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCC--CcEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 007987 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (582)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~~~~~~i~~p~d--v~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~al 262 (582)
. +|+ +.+.+.+++|+++++++-.... .+.+ . .-.++ +.+| =+|-.-+.. .-+ .|--.+
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~-~-l~~~g~~~~~l-DaPVsGg~~---~A~-------~G~L~i 140 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK-K-LTERKEQIFLV-DAYVSKGMS---DLL-------NGKLMI 140 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH-H-HHhcCCceEEE-EccCcCCHH---HHh-------cCCeEE
Confidence 4 576 3588889999999887755422 2211 0 11234 5555 455322222 112 244332
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh----hhhchHHHH-HHHHHHH---HHHcCCCHHHHH
Q 007987 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER----ILLGAVHGI-VESLFRR---FTENGMNEDLAY 334 (582)
Q Consensus 263 iAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq----vLsG~~pAl-ieAl~d~---lVe~Gl~pe~Ay 334 (582)
++ .. +.+..+.+..+++.+|.....- .-+ .|.. ++-+++.+. +.++.|+ +.+.|++++..+
T Consensus 141 mv-GG--~~~~~~~~~p~l~~~g~~i~~~---~G~-----~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~ 209 (1378)
T PLN02858 141 IA-SG--RSDAITRAQPFLSAMCQKLYTF---EGE-----IGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIY 209 (1378)
T ss_pred EE-cC--CHHHHHHHHHHHHHhcCceEEe---cCC-----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 33 33 5678999999999999641000 000 1111 333333332 3444444 578999999888
Q ss_pred HHH
Q 007987 335 KNT 337 (582)
Q Consensus 335 ~~~ 337 (582)
...
T Consensus 210 ~vl 212 (1378)
T PLN02858 210 DII 212 (1378)
T ss_pred HHH
Confidence 753
No 78
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.88 E-value=8.9e-08 Score=100.95 Aligned_cols=201 Identities=19% Similarity=0.255 Sum_probs=133.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHHhhhccCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~--------G~~~~d--~t~~~~~Eav~~AD 180 (582)
+++|+|||.|+-|.|+|+-|.++ |++|.++.|+..- .+.-... |+...+ ....|+.++++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 37999999999999999999999 8888877664221 1111110 221100 11457899999999
Q ss_pred eEEEeccchhHHHHHHHHHhcCCCCcEE-EEecCch-------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcc
Q 007987 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (582)
Q Consensus 181 IVILaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~ 252 (582)
+|++++|-+.+.++++++.++++++++| +.+.|+. ...+++ .+|.+.-++..=|+....+
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV--------- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV--------- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH---------
Confidence 9999999999999999999999888865 4667774 223333 3454434445555443333
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH--HHHHHHHHHHcCCCH
Q 007987 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI--VESLFRRFTENGMNE 330 (582)
Q Consensus 253 e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl--ieAl~d~lVe~Gl~p 330 (582)
.+|.|+-+++... +. +.+..+...+=+. .|.--+..|..|-+ ++|.+--. |-+++--+...|-.-
T Consensus 142 ---a~g~pta~~vas~-d~---~~a~~v~~~f~~~-----~Frvy~~~Dv~Gve-igGAlKNViAIA~Gi~dGlg~G~Na 208 (329)
T COG0240 142 ---AQGLPTAVVVASN-DQ---EAAEKVQALFSSP-----YFRVYTSTDVIGVE-IGGALKNVIAIAAGIADGLGLGDNA 208 (329)
T ss_pred ---hcCCCcEEEEecC-CH---HHHHHHHHHhCCC-----cEEEEecCchhhhH-HHHHHHHHHHHHHHHHHHhhcChhH
Confidence 3578886776653 22 3334444444444 55555677888876 88887775 666666677777777
Q ss_pred HHHHH-HHHHHHHH
Q 007987 331 DLAYK-NTVECITG 343 (582)
Q Consensus 331 e~Ay~-~~~~ei~g 343 (582)
..|.. -++.||..
T Consensus 209 kaalitrGL~Em~r 222 (329)
T COG0240 209 KAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHhHHHHHHH
Confidence 76665 57777654
No 79
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=107.23 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=107.5
Q ss_pred ecccccccc-ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH
Q 007987 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (582)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~ 173 (582)
++|.|.... ....|.| ||+||||+|.+|..+|..|+.. |++|+++++..++ +.+...+... ..+++
T Consensus 126 ~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~Ld 192 (324)
T COG0111 126 RRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSLD 192 (324)
T ss_pred HcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccHH
Confidence 566776521 2347889 9999999999999999999987 9998766653333 2344455553 57899
Q ss_pred hhhccCCeEEEeccchhH-HHHHH-HHHhcCCCCcEEEEec-Cc------hhhhhhcccccCCCCCcEEEeccCCChhhH
Q 007987 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (582)
Q Consensus 174 Eav~~ADIVILaVPd~a~-~~Vl~-eI~~~Lk~GaiL~~a~-G~------~i~~~~~~~i~~p~dv~VI~v~Pngpg~~v 244 (582)
+++++||+|++.+|-..- ..++. +.+..||+|++++-++ |- .+..++++.+ -...+||.-..|..+.+.
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i-~gA~lDVf~~EPl~~~~p- 270 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI-AGAALDVFEEEPLPADSP- 270 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc-ceEEecCCCCCCCCCCCh-
Confidence 999999999999995544 45675 6788899999888554 43 2445555433 235788888888777655
Q ss_pred HHHHhhcccccCCCceEEEeecc-CCCHHHH
Q 007987 245 RRLYVQGKEINGAGINSSFAVHQ-DVDGRAT 274 (582)
Q Consensus 245 R~ly~~G~e~~G~Gv~aliAv~q-d~tgeal 274 (582)
+|.- -+.+++||- ..|.++.
T Consensus 271 --L~~~--------pnV~~TPHia~~T~ea~ 291 (324)
T COG0111 271 --LWDL--------PNVILTPHIGGSTDEAQ 291 (324)
T ss_pred --hhcC--------CCeEECCcccccCHHHH
Confidence 3332 345568886 3444433
No 80
>PRK07574 formate dehydrogenase; Provisional
Probab=98.86 E-value=2.8e-08 Score=107.07 Aligned_cols=158 Identities=18% Similarity=0.111 Sum_probs=105.8
Q ss_pred eccccccc---cccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007987 95 RGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (582)
Q Consensus 95 ~~~r~~f~---~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~ 171 (582)
+.|+|... .....|.| ++|||||+|+||..+|+.|+.. |++|++.++... ..+.....|+.. ..+
T Consensus 174 ~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~ 241 (385)
T PRK07574 174 VEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----HVS 241 (385)
T ss_pred HhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----cCC
Confidence 44566432 12356899 9999999999999999999987 999877666432 233334556653 468
Q ss_pred HHhhhccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEeccCCChh
Q 007987 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~ 242 (582)
.+|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-. +..++++.+ -....||....|.-+.+
T Consensus 242 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i-~GAaLDV~~~EPlp~d~ 320 (385)
T PRK07574 242 FDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL-AGYAGDVWFPQPAPADH 320 (385)
T ss_pred HHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc-cEEEEecCCCCCCCCCC
Confidence 999999999999999977664 5775 688999999988754 3432 334444333 22456788777754444
Q ss_pred hHHHHHhhcccccCCCceEEEeecc-CCCHHHHHH
Q 007987 243 SVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (582)
Q Consensus 243 ~vR~ly~~G~e~~G~Gv~aliAv~q-d~tgeale~ 276 (582)
.. +.. -+.+++||- ..+.++.+.
T Consensus 321 pL---~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 321 PW---RTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred hH---HhC--------CCeEECCccccCcHHHHHH
Confidence 32 221 356778875 345555443
No 81
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.85 E-value=2e-07 Score=101.15 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=116.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh---------------
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea--------------- 175 (582)
+++|+|||+|.||.++|.+|.+. |++|++.+++. ...+. ...|... -.-...++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~-~~v~~-l~~g~~~--~~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQ-HAVDT-INRGEIH--IVEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCH-HHHHH-HHCCCCC--cCCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 99987665543 32332 3334321 001122222
Q ss_pred hccCCeEEEeccc----------hhHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhccccc--CC----CCCc-
Q 007987 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSMGLD--FP----KNIG- 231 (582)
Q Consensus 176 v~~ADIVILaVPd----------~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~----~~~~~i~--~p----~dv~- 231 (582)
+++||+||+++|+ ..+..+++.|.+++++|++|++.+.+... . +.+.... .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999997 46667788899999999998876654311 1 1111111 11 0111
Q ss_pred EEEecc--CCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhh
Q 007987 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILL 309 (582)
Q Consensus 232 VI~v~P--ngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLs 309 (582)
.+...| -.||..+.+... .+-++. . .+++..+.+..++..++...++-++. .+-+.-. .+.
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~K----l~~ 215 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCK----LTE 215 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHH----HHH
Confidence 244677 456666433221 333332 2 36788999999999998642222221 1111111 334
Q ss_pred chHHH----HHHHHHHHHHHcCCCHHHHHH
Q 007987 310 GAVHG----IVESLFRRFTENGMNEDLAYK 335 (582)
Q Consensus 310 G~~pA----lieAl~d~lVe~Gl~pe~Ay~ 335 (582)
+..-+ ++-.+...+-+.|+++++..+
T Consensus 216 N~~~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 216 NSFRDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44444 456666666678888876654
No 82
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.84 E-value=5.5e-09 Score=100.46 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=84.4
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
....+.| ++|||||+|.+|.++|+.|+.. |++|++.++.... .......++. ..+.+|++++||+|+
T Consensus 30 ~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~~l~ell~~aDiv~ 96 (178)
T PF02826_consen 30 PGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YVSLDELLAQADIVS 96 (178)
T ss_dssp TBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ESSHHHHHHH-SEEE
T ss_pred CccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----eeehhhhcchhhhhh
Confidence 4678999 9999999999999999999987 9998777665332 2335566776 579999999999999
Q ss_pred EeccchhHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEeccCCCh
Q 007987 184 LLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (582)
Q Consensus 184 LaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg 241 (582)
+++|-.... .++. +.+..||+|++++-. -|-. +..++++.+. ....||.-..|--+.
T Consensus 97 ~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~-ga~lDV~~~EP~~~~ 162 (178)
T PF02826_consen 97 LHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA-GAALDVFEPEPLPAD 162 (178)
T ss_dssp E-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE-EEEESS-SSSSSSTT
T ss_pred hhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc-eEEEECCCCCCCCCC
Confidence 999965543 4565 678899999988744 4532 3344442221 134566666664444
No 83
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.83 E-value=1.8e-07 Score=95.25 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=96.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC-------CCcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d-------~t~~~~~Eav~~ADIVIL 184 (582)
++|+|||.|+||..+|..|.++ |++|.+..|+.+ ..+...+.|+...+ ....+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 4799999999999999999998 888877776433 34445555763200 112345554 88999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcE-EEEecCch-hhhhhcccccCCCCCcEE------EeccCCChhhHHHHHhhcccccC
Q 007987 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-i~~~~~~~i~~p~dv~VI------~v~Pngpg~~vR~ly~~G~e~~G 256 (582)
+||.....++++.+.+++.++++ |+...|+. ...+.+ .+++. .++ .+...+|+... ..|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~---------~~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVR---------HTG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEE---------EcC
Confidence 99999999999999999988764 56777875 333333 23322 222 22233444441 114
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 257 ~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.|... +...++.. +..+.+.+++...|..
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~ 168 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLD 168 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCC
Confidence 45544 44333322 3455566777777753
No 84
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=107.53 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=95.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..|.| |+|||||+|+||.++|+.|+.. |++|+++++.... ..+...|+. ..+.++++++||+|+++
T Consensus 146 ~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~-----~~~l~ell~~aDiV~l~ 211 (333)
T PRK13243 146 YDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE-----YRPLEELLRESDFVSLH 211 (333)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-----ecCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999988 9988766654322 234445655 45889999999999999
Q ss_pred ccchhHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccC
Q 007987 186 ISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (582)
Q Consensus 186 VPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G 256 (582)
+|..... .++. +.+..||+|++|+.++ |-. +..++++.+ -...+||....|. |.+. ++..
T Consensus 212 lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i-~gAaLDV~~~EP~-~~~p---L~~~------ 280 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWI-AGAGLDVFEEEPY-YNEE---LFSL------ 280 (333)
T ss_pred CCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe-EEEEeccCCCCCC-CCch---hhcC------
Confidence 9976654 4664 7889999999988553 432 333444322 2235678877774 3222 3322
Q ss_pred CCceEEEeeccC
Q 007987 257 AGINSSFAVHQD 268 (582)
Q Consensus 257 ~Gv~aliAv~qd 268 (582)
-+.+++||-.
T Consensus 281 --~nvilTPHia 290 (333)
T PRK13243 281 --KNVVLAPHIG 290 (333)
T ss_pred --CCEEECCcCC
Confidence 3667888863
No 85
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.83 E-value=7.9e-08 Score=101.20 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=119.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhh-ccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav-~~ADIVILaVPd~a 190 (582)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ --..|+.+|..- ...+.+++ +..|+|+++|.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99888887764 345566677542 44555555 57999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecC---chhhhhhcccccCCCCCcEEEeccC-CChhhHHHHHhhcccccCCCceEEEee
Q 007987 191 QADNYEKIFSC-MKPNSILGLSHG---FLLGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 191 ~~~Vl~eI~~~-Lk~GaiL~~a~G---~~i~~~~~~~i~~p~dv~VI~v~Pn-gpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
+..|+...-+. +|.|+++++.-. +.....++ .+|+|.|++.+||. ||-.+ + ..++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv------n---h~wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV------N---HEWQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC------C---CccccCceEEEE
Confidence 99999876555 899998875544 33444445 68999999999995 33322 1 126788886654
Q ss_pred ccC----CCHHHHHHHHHHHHHhCCCccccccccccccc
Q 007987 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (582)
Q Consensus 266 ~qd----~tgeale~alala~aiG~~~~iettf~~E~~s 300 (582)
+.- ...+.-|..+.++...|+. ..+.+.+++++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegck-mVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCCe-EEEEEeeccccc
Confidence 432 2368899999999999986 444454555444
No 86
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.82 E-value=1.4e-07 Score=96.42 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=73.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHHhhhccCCeE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~---------t~~~~~Eav~~ADIV 182 (582)
++|+|||.|.||..+|..|.++ |++|.+..| . +..+...+.|+...+. ...+.+++.+.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5799999999999999999998 888877766 3 3344455566543110 123455666889999
Q ss_pred EEeccchhHHHHHHHHHhcCCCCcEE-EEecCch
Q 007987 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (582)
Q Consensus 183 ILaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~ 215 (582)
|+++|..+..++++++.++++++++| +...|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 99999999999999999999888765 4667875
No 87
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.82 E-value=1.9e-07 Score=99.22 Aligned_cols=208 Identities=15% Similarity=0.192 Sum_probs=124.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC--------ceEEEEecCC---cccHHHHHHc---------CceecCC--CcC
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARAA---------GFTEENG--TLG 170 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G--------~~ViVg~r~~---sks~~~A~~~---------G~~~~d~--t~~ 170 (582)
||+|||.|+.|.++|.-|.++ | ++|.++.|+. .+........ |+...+. ...
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 689999999999999999988 6 7888776632 1112111111 2211000 135
Q ss_pred CHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcE-EEEecCchhh---------hhhcccccCCCCCcEEEeccCCC
Q 007987 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGM 240 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~---------~~~~~~i~~p~dv~VI~v~Pngp 240 (582)
++++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++.++- +..=|+.+
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~~-~lsGP~~A 150 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPCG-VLSGANLA 150 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCeE-EeeCcchH
Confidence 7889999999999999999999999999999998874 5688888543 1111 1222222 23334333
Q ss_pred hhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH--HHH
Q 007987 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI--VES 318 (582)
Q Consensus 241 g~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl--ieA 318 (582)
..+ . .|.|+.+++.........+.++.+.+.+-.. .|.-..-.|+.|-+ |||.+--. |-+
T Consensus 151 ~Ev-----a-------~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~-----~frv~~s~Dv~GvE-l~galKNv~AIa~ 212 (342)
T TIGR03376 151 NEV-----A-------KEKFSETTVGYRDPADFDVDARVLKALFHRP-----YFRVNVVDDVAGVE-IAGALKNVVAIAA 212 (342)
T ss_pred HHH-----H-------cCCCceEEEEeCCCcchHHHHHHHHHHhCCC-----CEEEEEcCCcccch-hhHHHHHHHHHHH
Confidence 222 2 3565545544321111134455555555554 55556677889877 88888775 333
Q ss_pred HHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHH
Q 007987 319 LFRRFTENGMNEDLAYK-NTVECITGIISKII 349 (582)
Q Consensus 319 l~d~lVe~Gl~pe~Ay~-~~~~ei~glia~lI 349 (582)
+.=.+...|..-..|+. .++.||.. +++.+
T Consensus 213 Gi~~Gl~~g~N~~aalitrgl~Em~~-l~~~~ 243 (342)
T TIGR03376 213 GFVDGLGWGDNAKAAVMRRGLLEMIK-FARMF 243 (342)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHh
Confidence 33333345544444443 56666654 44444
No 88
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.82 E-value=1.4e-08 Score=95.77 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=69.3
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec----------CCCcCCHHhhhccCCeE
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~----------d~t~~~~~Eav~~ADIV 182 (582)
||+|||.|++|.++|.-|.+. |++|.++.|+. +..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99988877653 33333333222100 00145788999999999
Q ss_pred EEeccchhHHHHHHHHHhcCCCCcEEE-EecCc
Q 007987 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (582)
Q Consensus 183 ILaVPd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~ 214 (582)
++++|.+.+.+++++|.++++++++|+ ...||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998765 55677
No 89
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.80 E-value=2.6e-08 Score=104.24 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=99.5
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..|.| |||||||+|++|..+|+.++.. |.+|+++++.... ...++. ..+++|++++||+|+++
T Consensus 141 ~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~-----~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 141 GEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE-----RVSLEELLKTSDIISIH 203 (311)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce-----eecHHHHhhcCCEEEEe
Confidence 57899 9999999999999999999876 9998766553211 123554 45899999999999999
Q ss_pred ccchhHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccC
Q 007987 186 ISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (582)
Q Consensus 186 VPd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G 256 (582)
+|-.... .++. +.+..||+|++|+ .+-|-. +..++++.+. ..+||..-.|..+.+.. +.--
T Consensus 204 ~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP~~~~~pL---~~~~----- 273 (311)
T PRK08410 204 APLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEPMEKNHPL---LSIK----- 273 (311)
T ss_pred CCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCCCCCCChh---hccC-----
Confidence 9965554 4665 6888999999987 444532 4455554443 56788888885544432 2100
Q ss_pred CCceEEEeecc-CCCHHHHHHH
Q 007987 257 AGINSSFAVHQ-DVDGRATNVA 277 (582)
Q Consensus 257 ~Gv~aliAv~q-d~tgeale~a 277 (582)
.=-+.+++||- ..+.++.+..
T Consensus 274 ~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 274 NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCEEECCccccCCHHHHHHH
Confidence 00267788885 3455555443
No 90
>PLN03139 formate dehydrogenase; Provisional
Probab=98.79 E-value=2.6e-08 Score=107.39 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=105.6
Q ss_pred eeccccccc---cccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007987 94 VRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (582)
Q Consensus 94 ~~~~r~~f~---~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~ 170 (582)
++.|+|... .....|.| |+|||||+|.||..+|+.|+.. |++|+++++.. ...+...+.|+.. ..
T Consensus 180 ~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~~ 247 (386)
T PLN03139 180 VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----EE 247 (386)
T ss_pred HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----cC
Confidence 345566431 12357899 9999999999999999999987 99987665542 2233344566653 45
Q ss_pred CHHhhhccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCCh
Q 007987 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg 241 (582)
+++|++++||+|++++|..... .++. +++..||+|++|+.++ |-. +..++++.+ .....||..-.|..+.
T Consensus 248 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l-~GAaLDV~~~EPlp~d 326 (386)
T PLN03139 248 DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHI-GGYGGDVWYPQPAPKD 326 (386)
T ss_pred CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCc-eEEEEcCCCCCCCCCC
Confidence 8999999999999999976664 4665 6899999999988554 432 334444333 2245678777776555
Q ss_pred hhHHHHHhhcccccCCCceEEEeecc-CCCHHHHH
Q 007987 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (582)
Q Consensus 242 ~~vR~ly~~G~e~~G~Gv~aliAv~q-d~tgeale 275 (582)
+..+ .. -+.+++||- ..+.++.+
T Consensus 327 ~pL~---~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 327 HPWR---YM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred Chhh---cC--------CCeEEcccccccCHHHHH
Confidence 4422 11 256678876 23444443
No 91
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.79 E-value=1.3e-08 Score=105.84 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccccccccchhHHH----HHHH
Q 007987 450 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL----TQQA 525 (582)
Q Consensus 450 ~gv~~~~~~a~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~~~~~~~----~~~~ 525 (582)
.|-+.+++.|++|+|.+.|++|.-++.|.+. -+..+.+||.+.|+..|.+.||+||++|.+.|.||.-... +++.
T Consensus 201 cGgl~~li~agfetLvEaGy~PE~AyfE~lh-E~klIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~~~k~~mk~~ 279 (338)
T COG0059 201 CGGLQALIKAGFETLVEAGYQPELAYFECLH-ELKLIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDAETKEEMKKV 279 (338)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecHHhHHHHHHH
Confidence 5667778889999999999999999999998 4678889999999999999999999999999999765554 7888
Q ss_pred HhhhcCCCcc-------------chhHHHhhhcChHHHHHHHhhccCCcc
Q 007987 526 LVAVDNDAPI-------------NGDLISNFLSDPVHGAIEVCAQLRPTV 562 (582)
Q Consensus 526 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (582)
+..+++|+-. ...+.+.-++||++.+=+.-.++.|-+
T Consensus 280 l~dIq~G~Fak~~~~e~~~g~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~ 329 (338)
T COG0059 280 LKDIQSGEFAKEWILENQAGRPKLEALREETAEHEIEKVGKELRKMMPWE 329 (338)
T ss_pred HHHHhcChhHHHHHHhhhcCCHHHHHHHHHhhcChHHHHHHHHHHhcchh
Confidence 8888888544 444556667788877766666666644
No 92
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.78 E-value=1.3e-07 Score=91.53 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=100.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcC-------------ceecCCC
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEENGT 168 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G-------------~~~~d~t 168 (582)
||+|||.|.||.++|..+... |++|++.+.+.. ..+. ..+.| +..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---- 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISF---- 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE----
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc----
Confidence 699999999999999999999 999988776533 1111 11111 121
Q ss_pred cCCHHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 169 ~~~~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
..++++++ ++|+||=++|.... .++|.++.+.++++++| +-++++.+..+.+ ..+..-+++.+|+-.|.+.++
T Consensus 70 ~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 70 TTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp ESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT--
T ss_pred ccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc
Confidence 45778877 99999999997665 35999999999999987 5778898887765 333445799999988887621
Q ss_pred HHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.-= +.++...+++.++.+.+++..+|..
T Consensus 146 -------------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 -------------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp -------------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 122 5668889999999999999999864
No 93
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.78 E-value=5.2e-08 Score=102.81 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=102.7
Q ss_pred cccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeE
Q 007987 103 LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (582)
Q Consensus 103 ~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIV 182 (582)
.....++| ||+||||+|.+|.++|+.++.. |++|+++.+... .+...+.++. ..+.+|++++||+|
T Consensus 139 ~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~-----y~~l~ell~~sDii 204 (324)
T COG1052 139 LLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR-----YVDLDELLAESDII 204 (324)
T ss_pred ccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce-----eccHHHHHHhCCEE
Confidence 34568999 9999999999999999999865 999877766532 3333444455 35599999999999
Q ss_pred EEeccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhccc
Q 007987 183 LLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (582)
Q Consensus 183 ILaVPd~a~~~-Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e 253 (582)
+|.+|...... ++. +.+..||+|.+|+-.+ |-. +.-++++.+ -..+.||.--.|.-..+..+++-.
T Consensus 205 ~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i-~gaglDV~e~Ep~~~d~~l~~l~~---- 279 (324)
T COG1052 205 SLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKI-AGAGLDVFENEPALFDHPLLRLDN---- 279 (324)
T ss_pred EEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCc-ceEEeeecCCCCCCCChhHhhccC----
Confidence 99999777754 665 6888999999988443 432 444554333 345788888888644333221111
Q ss_pred ccCCCceEEEeecc-CCCHHHHH
Q 007987 254 INGAGINSSFAVHQ-DVDGRATN 275 (582)
Q Consensus 254 ~~G~Gv~aliAv~q-d~tgeale 275 (582)
. -+.+++||. ..|.+++.
T Consensus 280 ---~-~~vvltPHia~at~ea~~ 298 (324)
T COG1052 280 ---F-PNVVLTPHIASATEEARK 298 (324)
T ss_pred ---C-CCEEEccccccccHHHHH
Confidence 1 236788887 44544443
No 94
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.78 E-value=2.9e-07 Score=94.00 Aligned_cols=226 Identities=14% Similarity=0.202 Sum_probs=153.9
Q ss_pred CCEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHcCceecC
Q 007987 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (582)
Q Consensus 111 ikkIgIIG~Gsm--------------------G~AiA~nLrds~~~~g~G~~ViVg~r~----~sks~~~A~~~G~~~~d 166 (582)
++||+|.|+||| |..+|-.+..+ |++|+....+ +...|++-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 368888888887 45566666666 8888777653 335589999999986
Q ss_pred CCcCCHHhhhccCCeEEEeccch-hHHHHHHHHHhcCCCCcEEE---EecCchhhhhhcccccC-CCCCcEEEeccC-CC
Q 007987 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILG---LSHGFLLGHLQSMGLDF-PKNIGVIAVCPK-GM 240 (582)
Q Consensus 167 ~t~~~~~Eav~~ADIVILaVPd~-a~~~Vl~eI~~~Lk~GaiL~---~a~G~~i~~~~~~~i~~-p~dv~VI~v~Pn-gp 240 (582)
+.+..++++.+++.+|-||=. ..-.+.++|.+++..|++|+ -++.+.+.+.-+..+.. ++|+.|-..||- -|
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 667778999999999999977 55688899999999999986 33444443322333444 478999999995 46
Q ss_pred hhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-ccccccccccccccchhhhhhhchHHH--HHH
Q 007987 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERILLGAVHG--IVE 317 (582)
Q Consensus 241 g~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~-~~iettf~~E~~sDlfgEqvLsG~~pA--lie 317 (582)
|+...+.|.-+ |++-.. -.-+|+++.+++..++++.|.. +++. .|+.....=+|.+.. .+.
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~VaDmg~lvtav~l~ 214 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVADMGVLVTAVALS 214 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhhhhHHHHHHHHHH
Confidence 77655555543 222211 2246889999999999999975 2222 233332211222222 133
Q ss_pred HHHH---HHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007987 318 SLFR---RFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 363 (582)
Q Consensus 318 Al~d---~lV-e~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~ 363 (582)
+..| .+. -.|-|.|+--+....++ +.++.++-.+|+..|...+..
T Consensus 215 gvldyy~Vg~qIi~AP~eMIekQilmtL-qTmAsLvetsGi~g~~~~~n~ 263 (340)
T COG4007 215 GVLDYYYVGTQIIGAPKEMIEKQILMTL-QTMASLVETSGIDGMLKALNP 263 (340)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHHHHhcchhHHHHhcCH
Confidence 3333 333 47999999888777776 458999999999999887764
No 95
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.78 E-value=1.7e-08 Score=106.08 Aligned_cols=110 Identities=19% Similarity=0.108 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhccchhhhccccccccchhHHH---HHHHH
Q 007987 450 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL---TQQAL 526 (582)
Q Consensus 450 ~gv~~~~~~a~~~~l~~~~~~~s~~~~e~~~e~~~~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~~~~~~~---~~~~~ 526 (582)
.|...+.+.+.+|.|.+.|+++..+.+|.+.|..-+. .+|.+.|++.|.++||+||+||++.|.+.|++.+ +++.|
T Consensus 186 ~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~~-~l~~e~g~~~l~~~Vsstaeyg~~~~~~~~~~~~~~~~~~~~ 264 (314)
T TIGR00465 186 CGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLIV-DLIYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKIL 264 (314)
T ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHhcHHHHHHHcCCHHHcCcchhHHHhhHHHHHHHHHHH
Confidence 6888889999999999999999999999998885444 9999999999999999999999999999999988 88999
Q ss_pred hhhcCCCcc-------------chhHHHhhhcChHHHHHHHhhccCC
Q 007987 527 VAVDNDAPI-------------NGDLISNFLSDPVHGAIEVCAQLRP 560 (582)
Q Consensus 527 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (582)
..|++|+-. .+.+.+..++||++..=+.-..++|
T Consensus 265 ~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~vg~~lr~~~~ 311 (314)
T TIGR00465 265 KEIQNGEFAKEWALENEAGKPAFNTARKYESEHEIEKVGKELRAMVP 311 (314)
T ss_pred HHhCCChhhhhhhhhccCCcHHHHHHHHHHhCCcHHHHHHHHHHhcc
Confidence 999999433 3455666789998765444333333
No 96
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.78 E-value=3.7e-08 Score=102.95 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=98.2
Q ss_pred eccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHh
Q 007987 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (582)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~E 174 (582)
++|+|... ....|.| ++|||||+|+||.++|+.|+.. |++|++.++...+ .|+.. ...++++
T Consensus 108 ~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l~e 169 (303)
T PRK06436 108 KNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEPED 169 (303)
T ss_pred HcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCHHH
Confidence 34556543 2367999 9999999999999999988876 9998776654211 23321 1357899
Q ss_pred hhccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 175 TISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 175 av~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
++++||+|++++|..... .++. +.+..||+|++++.++ |-. +..+++..+ .....||..-.|..+.+.
T Consensus 170 ll~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i-~~a~lDV~~~EP~~~~~~-- 246 (303)
T PRK06436 170 IMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND-KYYLSDVWWNEPIITETN-- 246 (303)
T ss_pred HHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc-eEEEEccCCCCCCCccCC--
Confidence 999999999999977664 4665 6888899999887543 432 223333212 123457776677432221
Q ss_pred HHHhhcccccCCCceEEEeecc--CCCHHHHHHH
Q 007987 246 RLYVQGKEINGAGINSSFAVHQ--DVDGRATNVA 277 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~q--d~tgeale~a 277 (582)
=-+.+++||- ..+.+..+.+
T Consensus 247 ------------~~nviiTPHi~g~~t~e~~~~~ 268 (303)
T PRK06436 247 ------------PDNVILSPHVAGGMSGEIMQPA 268 (303)
T ss_pred ------------CCCEEECCccccccCHHHHHHH
Confidence 1367889993 3566554443
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.76 E-value=1.3e-07 Score=98.51 Aligned_cols=96 Identities=28% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--C-----------CcCCHHhhhc
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d--~-----------t~~~~~Eav~ 177 (582)
|++|+|||+|.||.++|..|.++ |++|.+.+|. +..+...+.|+...+ + ...+. ++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999999999999999999 9988877764 223444555654211 0 01233 5678
Q ss_pred cCCeEEEeccchhHHHHHHHHHhcCCCCcEEE-EecCch
Q 007987 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (582)
Q Consensus 178 ~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (582)
.+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 99999999999999999999999999988765 556775
No 98
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.76 E-value=1.3e-07 Score=98.28 Aligned_cols=149 Identities=20% Similarity=0.183 Sum_probs=103.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|||||+|+||.+|+.||.++ |+.|+|++|.-++ .+..++.|..+ ..++.|+++++|+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7899999999999999999999 9999999887554 56666778876 67899999999999999998877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEecCchh---hhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 007987 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 192 ~-~Vl~---eI~~~Lk~GaiL-~~a~G~~i---~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
. ++|- .+...+++|... ++++-+.- ..+.+ .+ -..+..+| =+|-. |-. ..= -.|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i-~~~~~~~v-DAPVS-Gg~--~~A-------~~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AI-SNKGGRFV-DAPVS-GGV--KGA-------EEGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HH-HhCCCeEE-ecccc-CCc--hhh-------hcCeEEEE
Confidence 5 5664 266777788865 57764431 12222 11 12344444 34411 111 011 13555544
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCC
Q 007987 264 AVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 264 Av~qd~tgeale~alala~aiG~~ 287 (582)
+ .. ++...+.+..+++.+|..
T Consensus 172 a-gG--de~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-GG--DEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-cC--cHHHHHHHHHHHHHhcce
Confidence 4 33 577888899999999964
No 99
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.74 E-value=7.7e-08 Score=101.35 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=97.6
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLr-ds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
...|.| |||||||+|++|..+|+.++ .. |++|++.++... .+.....|.. ..+.+|++++||+|+
T Consensus 140 g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~-----~~~l~ell~~sDvv~ 205 (323)
T PRK15409 140 GTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR-----YCDLDTLLQESDFVC 205 (323)
T ss_pred cCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE-----ecCHHHHHHhCCEEE
Confidence 357999 99999999999999999987 44 888876554321 2223345655 458999999999999
Q ss_pred EeccchhHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccc
Q 007987 184 LLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (582)
Q Consensus 184 LaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~ 254 (582)
+++|-.... .++. +.+..||+|++++-+ -|-. +..++++.+ -....||..-.|-.+.+. ++.-
T Consensus 206 lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i-~gAaLDVf~~EP~~~~~p---L~~~---- 277 (323)
T PRK15409 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI-HAAGLDVFEQEPLSVDSP---LLSL---- 277 (323)
T ss_pred EeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe-eEEEeecCCCCCCCCCch---hhcC----
Confidence 999966654 4665 688899999988744 3432 334444333 234577877777533333 2221
Q ss_pred cCCCceEEEeecc-CCCHHHHH
Q 007987 255 NGAGINSSFAVHQ-DVDGRATN 275 (582)
Q Consensus 255 ~G~Gv~aliAv~q-d~tgeale 275 (582)
-+.+++||- ..+.++.+
T Consensus 278 ----~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 278 ----PNVVAVPHIGSATHETRY 295 (323)
T ss_pred ----CCEEEcCcCCCCcHHHHH
Confidence 467788885 33444443
No 100
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.74 E-value=2.5e-06 Score=98.71 Aligned_cols=348 Identities=12% Similarity=0.125 Sum_probs=194.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcC-------------cee
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTE 164 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G-------------~~~ 164 (582)
+.+++|+|||.|.||..||..+..+ |++|++.+.+.+ ..++ ..+.| +..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999998 999987765432 2222 12222 121
Q ss_pred cCCCcCCHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCCh
Q 007987 165 ENGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (582)
Q Consensus 165 ~d~t~~~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg 241 (582)
..++ +.+++||+||=++|.+... +++.++-+.++++++| +-++++.+..+.+ .....-+|+..|+=-|.
T Consensus 384 ----~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~ 455 (714)
T TIGR02437 384 ----TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPV 455 (714)
T ss_pred ----eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCc
Confidence 2344 4578999999999976653 5999999999999988 4778888877765 23334579999998888
Q ss_pred hhHHHHHhhcccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchH-HHHHHHH
Q 007987 242 PSVRRLYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAV-HGIVESL 319 (582)
Q Consensus 242 ~~vR~ly~~G~e~~G~Gv~al-iAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~-pAlieAl 319 (582)
+. ++.+ |.++..++++.++.+.+++..+|...++ +. |.-| .+.+=+ .+++. -
T Consensus 456 ~~---------------~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~----v~----d~pG--fi~NRl~~~~~~-e 509 (714)
T TIGR02437 456 HR---------------MPLVEVIRGEKSSDETIATVVAYASKMGKTPIV----VN----DCPG--FFVNRVLFPYFG-G 509 (714)
T ss_pred cc---------------CceEeecCCCCCCHHHHHHHHHHHHHcCCEEEE----eC----Cccc--chHHHHHHHHHH-H
Confidence 87 3331 4557788999999999999999974211 11 1111 122222 22332 2
Q ss_pred HHHHHHcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChh
Q 007987 320 FRRFTENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSE 396 (582)
Q Consensus 320 ~d~lVe~Gl~pe~Ay~~~~~e---i~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~f 396 (582)
+-.+++.|.++++-=...-+. =.|+ -.++-..|++.+++.... -...+++.+...+ -..+++.. ..|.+
T Consensus 510 a~~l~~eG~~~~~ID~a~~~~~G~p~GP-f~l~D~~Gld~~~~i~~~-~~~~~~~~~~~~~---~~~l~~~v---~~G~l 581 (714)
T TIGR02437 510 FSKLLRDGADFVRIDKVMEKQFGWPMGP-AYLLDVVGIDTGHHAQAV-MAEGFPDRMGKDG---RDAIDALF---EAKRL 581 (714)
T ss_pred HHHHHHCCCCHHHHHHHHHhcCCCccCH-HHHHHhhhHHHHHHHHHH-HHHhcCcccccch---hHHHHHHH---HCCCC
Confidence 345678898887643321111 1242 346666677665543321 1122333211111 22444443 45777
Q ss_pred hhHHHHhcccccccC-CCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhC--CChhh
Q 007987 397 IRSVVLAGRRFYEKE-GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKG--HSYSE 473 (582)
Q Consensus 397 ar~~i~e~~~~~~~~-g~~~~~~~~i~~~~ie~vG~~lRa~~~~~~~g~~~p~t~gv~~~~~~a~~~~l~~~~--~~~s~ 473 (582)
.|+. ++.+|.-. +-.. ...+..+..+...=+..|. +..++ +..-+.+=++.++..--+.+| ++| .++++
T Consensus 582 G~K~---g~GfY~y~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~Rll~~~~nEa~~ll-~eGiva~~~d 653 (714)
T TIGR02437 582 GQKN---GKGFYAYEADKKG-KPKKLVDSSVLELLKPVVY--EQRDF-DDEEIIARMMIPMINETVRCL-EEGIVATAAE 653 (714)
T ss_pred cccC---CCEEEecccCcCc-cccCCCCHHHHHHHHHhhc--ccCCC-CHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHH
Confidence 6652 33333111 0000 0000112222222122222 11111 111234556666666666665 555 66644
Q ss_pred hhhhhHHHHhh------hcchhhhhccchhhhhccchhhhcccccccc
Q 007987 474 IINESVIESVD------SLNPFMHARGVSFMVDNCSTTARLGSRKWAP 515 (582)
Q Consensus 474 ~~~e~~~e~~~------~l~p~~~~~~~~~m~~~~s~ta~~g~~~~~~ 515 (582)
+|.-.+-..- =...|+...|++.+++.|..=+++|. .|.|
T Consensus 654 -ID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~~~g~-~~~p 699 (714)
T TIGR02437 654 -ADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYAELGA-LYQV 699 (714)
T ss_pred -HHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhCC-CCCC
Confidence 4544444432 12235666899998888885555563 3444
No 101
>PLN02928 oxidoreductase family protein
Probab=98.73 E-value=6.7e-08 Score=102.71 Aligned_cols=159 Identities=22% Similarity=0.199 Sum_probs=101.0
Q ss_pred ccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------ceecCC
Q 007987 96 GGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEENG 167 (582)
Q Consensus 96 ~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G--------~~~~d~ 167 (582)
+|+|.-+ ....+.| |+|||||+|.||..+|+.|+.. |++|++.++...+.. ....+ +.....
T Consensus 146 ~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (347)
T PLN02928 146 ARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEP--EDGLLIPNGDVDDLVDEKG 215 (347)
T ss_pred cCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhh--hhhhccccccccccccccC
Confidence 3455432 2357999 9999999999999999999977 999877655422211 11100 000001
Q ss_pred CcCCHHhhhccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEeccC
Q 007987 168 TLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (582)
Q Consensus 168 t~~~~~Eav~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~Pn 238 (582)
...+++|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-. +..++++.+ ....+||....|-
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i-~gAaLDV~~~EP~ 294 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL-GGLAIDVAWSEPF 294 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe-eEEEEccCCCCCC
Confidence 2468999999999999999966553 4665 688899999998855 3432 334444322 2346788887885
Q ss_pred CChhhHHHHHhhcccccCCCceEEEeeccC-CCHHHHHH
Q 007987 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (582)
Q Consensus 239 gpg~~vR~ly~~G~e~~G~Gv~aliAv~qd-~tgeale~ 276 (582)
-+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 295 ~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 295 DPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 44433 2322 4677888863 45454443
No 102
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.71 E-value=4.3e-08 Score=103.40 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=80.0
Q ss_pred cccccCCCEEEEEccchhHHHHHHHH-HHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nL-rds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
...|.| ++|||||+|+||.++|+.| +.. |++|++.++...+. ...++.. ..++++++++||+|+
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIv 205 (332)
T PRK08605 141 SRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVT 205 (332)
T ss_pred cceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEE
Confidence 467899 9999999999999999999 434 88876654432221 1223331 458899999999999
Q ss_pred EeccchhHHHHH--HHHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEecc
Q 007987 184 LLISDAAQADNY--EKIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (582)
Q Consensus 184 LaVPd~a~~~Vl--~eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~P 237 (582)
+++|.......+ .+..+.|++|++|+.+ -|.. +..+.++.+ -....||.-..|
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i-~gaalDV~~~Ep 267 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI-KGAALDTYEFER 267 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe-eEEEEecccCCC
Confidence 999988776654 3678899999988755 3542 223333222 123456776665
No 103
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.70 E-value=7.8e-08 Score=101.53 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=81.8
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
...|+| ++|||||+|+||.++|+.|+.. |++|++.++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 467899 9999999999999999999988 9998776654322111 1111 3578999999999999
Q ss_pred eccchhH-HHHHH-HHHhcCCCCcEEEE-ecCch------hhhhhcccccCCCCCcEEEecc
Q 007987 185 LISDAAQ-ADNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (582)
Q Consensus 185 aVPd~a~-~~Vl~-eI~~~Lk~GaiL~~-a~G~~------i~~~~~~~i~~p~dv~VI~v~P 237 (582)
++|.... ..++. ++++.|++|++|+. +-|-. +..++++.+ -....||..-.|
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i-~gaalDV~~~EP 265 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL-LGAAIDTYENEA 265 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe-eEEEEeccCCCC
Confidence 9997765 34454 78899999998774 44543 334443222 123567776666
No 104
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.69 E-value=5.4e-08 Score=108.57 Aligned_cols=138 Identities=18% Similarity=0.161 Sum_probs=96.1
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
...|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. +.+++|++++||+|++
T Consensus 133 g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~l~ell~~aDvV~l 199 (525)
T TIGR01327 133 GTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDDLDELLARADFITV 199 (525)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCCHHHHHhhCCEEEE
Confidence 357899 9999999999999999999987 99887665532 234556667653 4579999999999999
Q ss_pred eccchhHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhccccc
Q 007987 185 LISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (582)
Q Consensus 185 aVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~ 255 (582)
++|..... .++. +.+..||+|++|+.++ |-. +..++++.+ -...+||+--.|. +.+. ++.-
T Consensus 200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i-~gAaLDVf~~EP~-~~~p---L~~~----- 269 (525)
T TIGR01327 200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHV-RAAALDVFEKEPP-TDNP---LFDL----- 269 (525)
T ss_pred ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCe-eEEEEecCCCCCC-CCCh---hhcC-----
Confidence 99977554 4664 6788999999888554 421 334444333 2245677777773 2222 3322
Q ss_pred CCCceEEEeeccC
Q 007987 256 GAGINSSFAVHQD 268 (582)
Q Consensus 256 G~Gv~aliAv~qd 268 (582)
-+.+++||-.
T Consensus 270 ---~nvi~TPHia 279 (525)
T TIGR01327 270 ---DNVIATPHLG 279 (525)
T ss_pred ---CCeEECCCcc
Confidence 3667788863
No 105
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.67 E-value=2e-07 Score=92.03 Aligned_cols=131 Identities=15% Similarity=0.021 Sum_probs=95.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|+|||. |.||..++.-++++ |+.|. ++++|+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 48999998 99999999999999 98763 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCC
Q 007987 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~t 270 (582)
..++++++. .+|+++.+++-...+ ...++|..||.. |+. .++. |-..+++++ ..+.+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMf-Gp~------~a~~--~lf~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLF-GPM------SYND--GVHRTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCC-CCC------cCcc--cccceEEEE-CCCCC
Confidence 999998865 268899998754322 134799999954 422 1110 111245443 55667
Q ss_pred HHHHHHHHHHHHHhCCCccccccccccccccchhh
Q 007987 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (582)
Q Consensus 271 geale~alala~aiG~~~~iettf~~E~~sDlfgE 305 (582)
+++++.++++++ |+ ++++++.++|++.-.+..
T Consensus 101 ~~~~~~~~~l~~--G~-~~~~~t~eeHD~~~A~is 132 (197)
T PRK06444 101 DNYLNEINEMFR--GY-HFVEMTADEHDLLMSEIM 132 (197)
T ss_pred HHHHHHHHHHHc--CC-EEEEeCHHHHHHHHHHHH
Confidence 788889999998 64 688888888877644443
No 106
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.66 E-value=6.6e-08 Score=107.90 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=100.5
Q ss_pred ecccccccc-ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH
Q 007987 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (582)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~ 173 (582)
++|+|.... ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+...|+.. .+++
T Consensus 124 ~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~l~ 189 (526)
T PRK13581 124 KAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VSLD 189 (526)
T ss_pred HcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----EcHH
Confidence 345554321 2356899 9999999999999999999987 99987666542 234455677763 4899
Q ss_pred hhhccCCeEEEeccchhH-HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhH
Q 007987 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (582)
Q Consensus 174 Eav~~ADIVILaVPd~a~-~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~v 244 (582)
|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..++++.+ -...+||....|. |.+.
T Consensus 190 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i-~gAaLDVf~~EP~-~~~p- 266 (526)
T PRK13581 190 ELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV-AGAALDVFEKEPP-TDSP- 266 (526)
T ss_pred HHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe-eEEEEecCCCCCC-CCch-
Confidence 999999999999997755 45664 7889999999888553 432 334444322 2345677777773 3222
Q ss_pred HHHHhhcccccCCCceEEEeeccC
Q 007987 245 RRLYVQGKEINGAGINSSFAVHQD 268 (582)
Q Consensus 245 R~ly~~G~e~~G~Gv~aliAv~qd 268 (582)
++.. -+.+++||-.
T Consensus 267 --L~~~--------~nvilTPHia 280 (526)
T PRK13581 267 --LFEL--------PNVVVTPHLG 280 (526)
T ss_pred --hhcC--------CCeeEcCccc
Confidence 3322 3667888863
No 107
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.66 E-value=1.9e-07 Score=97.87 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=97.4
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..|+| |+|||||+|.+|..+|+.++.. |++|++..+.... ..... ..+.+|++++||+|+++
T Consensus 143 ~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-----~~~l~ell~~sDiv~l~ 204 (314)
T PRK06932 143 TDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-----YTPFEEVLKQADIVTLH 204 (314)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc-----cCCHHHHHHhCCEEEEc
Confidence 57999 9999999999999999999876 9988655432110 11111 35789999999999999
Q ss_pred ccchhHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccC
Q 007987 186 ISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (582)
Q Consensus 186 VPd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G 256 (582)
+|-.... .++. +.+..||+|++|+ .+-|-. +..++++.+ -....||..-.|-.+.+...+.+.+-
T Consensus 205 ~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i-~gAaLDV~~~EP~~~~~pl~~~~~~~----- 278 (314)
T PRK06932 205 CPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKI-AGAALDVLVKEPPEKDNPLIQAAKRL----- 278 (314)
T ss_pred CCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCc-cEEEEecCCCCCCCCCChhhHhhcCC-----
Confidence 9965554 4665 6888999999887 444542 334444333 23467888888855444432211121
Q ss_pred CCceEEEeecc-CCCHHHHHHHH
Q 007987 257 AGINSSFAVHQ-DVDGRATNVAL 278 (582)
Q Consensus 257 ~Gv~aliAv~q-d~tgeale~al 278 (582)
-+.+++||- ..+.++.+...
T Consensus 279 --pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 279 --PNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred --CCEEECCccccCcHHHHHHHH
Confidence 367788885 34555555443
No 108
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.65 E-value=8.8e-08 Score=100.47 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=95.0
Q ss_pred ccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh
Q 007987 96 GGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (582)
Q Consensus 96 ~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea 175 (582)
.|+|... ....++| +||||||+|+||..+|+.|+.. |++|++..+...+ . .++.. ..+..+++++
T Consensus 123 ~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~e~ 187 (312)
T PRK15469 123 SSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELSAF 187 (312)
T ss_pred hCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHHHH
Confidence 3455432 2246889 9999999999999999999987 9998766653221 1 12221 0113578999
Q ss_pred hccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHH
Q 007987 176 ISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (582)
Q Consensus 176 v~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ 246 (582)
+++||+|++++|..... .++. +.+..||+|++|+.++ |-. +..++++.+ -....||..-.|--+.+.
T Consensus 188 l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i-~gaalDVf~~EPl~~~~p--- 263 (312)
T PRK15469 188 LSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV-KGAMLDVFSREPLPPESP--- 263 (312)
T ss_pred HhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe-eeEEecCCCCCCCCCCCh---
Confidence 99999999999976664 5665 6888999999888554 432 334444323 123457776666432222
Q ss_pred HHhhcccccCCCceEEEeeccC
Q 007987 247 LYVQGKEINGAGINSSFAVHQD 268 (582)
Q Consensus 247 ly~~G~e~~G~Gv~aliAv~qd 268 (582)
++.. -+.+++||-.
T Consensus 264 l~~~--------~nvi~TPHia 277 (312)
T PRK15469 264 LWQH--------PRVAITPHVA 277 (312)
T ss_pred hhcC--------CCeEECCcCC
Confidence 2222 3667888863
No 109
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.61 E-value=1.1e-06 Score=101.92 Aligned_cols=213 Identities=11% Similarity=0.116 Sum_probs=136.0
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----------cHHHHHHcCceec-------C--CCcC
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE-------N--GTLG 170 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk----------s~~~A~~~G~~~~-------d--~t~~ 170 (582)
.+++|+|||.|.||..||..+..+ |++|++.+.+... .+++..+.|-... + ....
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 458999999999999999999988 9998877654321 1112222221100 0 0023
Q ss_pred CHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHH
Q 007987 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~l 247 (582)
++ +.+++||+||=++|.+... +++.++.+.++++++| +-++++.+..+.+ .....-+|+..|+=.|.+.+
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m--- 480 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKM--- 480 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccC---
Confidence 44 4678999999999976653 5999999999999987 4678888877765 23334579999998888873
Q ss_pred HhhcccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhch-HHHHHHHHHHHHHH
Q 007987 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGA-VHGIVESLFRRFTE 325 (582)
Q Consensus 248 y~~G~e~~G~Gv~al-iAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~-~pAlieAl~d~lVe 325 (582)
+.+ |..+..++++.++.+.+++..+|... ..+. ...-| +.+= +.+++..+. .+++
T Consensus 481 ------------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p----v~v~--d~pGF----i~NRi~~~~~~ea~-~lv~ 537 (737)
T TIGR02441 481 ------------QLLEIITHDGTSKDTLASAVAVGLKQGKVV----IVVK--DGPGF----YTTRCLGPMLAEVI-RLLQ 537 (737)
T ss_pred ------------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeE----EEEC--CcCCc----hHHHHHHHHHHHHH-HHHH
Confidence 321 45577889999999999999999741 1111 11111 2221 223333322 4678
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 007987 326 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 360 (582)
Q Consensus 326 ~Gl~pe~Ay~~~~~ei---~glia~lI~e~Gi~~m~d~ 360 (582)
.|+++++-=.. +... .| --.++-..|++.+++.
T Consensus 538 eGv~~~~ID~a-~~~~G~p~G-P~~l~D~vGld~~~~v 573 (737)
T TIGR02441 538 EGVDPKKLDKL-TTKFGFPVG-AATLADEVGVDVAEHV 573 (737)
T ss_pred cCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhHHHHHHH
Confidence 89988654443 2221 13 2355666666554443
No 110
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.60 E-value=1.6e-06 Score=100.23 Aligned_cols=347 Identities=12% Similarity=0.116 Sum_probs=191.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-----------HHHHcCceecC---------CC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~-----------~A~~~G~~~~d---------~t 168 (582)
+.+++|+|||.|.||..||.-+..+ |++|++.+.+.. ..+ +..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999988 999988776532 222 22222211000 00
Q ss_pred cCCHHhhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 169 ~~~~~Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
..++ +.+++||+||=++|..... +++.++.++++++++| +-++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5578999999999976653 5999999999999988 4778888877765 333445799999988888731
Q ss_pred HHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchH-HHHHHHHHHHHH
Q 007987 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAV-HGIVESLFRRFT 324 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~-pAlieAl~d~lV 324 (582)
.-= |.++..++++.++.+.+++..+|...+ .+. +..=| +.+=+ .+++.. +-.++
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv----~v~--d~pGf----v~nRi~~~~~~e-a~~lv 514 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPI----VVN--DCPGF----FVNRVLFPYFAG-FSQLL 514 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceE----Eec--CcCch----hHHHHHHHHHHH-HHHHH
Confidence 111 455778899999999999999997511 111 11111 22222 223222 33567
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHH
Q 007987 325 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVV 401 (582)
Q Consensus 325 e~Gl~pe~Ay~~~~~ei---~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~i 401 (582)
+.|.++++-=...-+.+ .| --+++-..|++.+++.... -...+++.+ +.+.-..+++. |..|.+.++
T Consensus 515 ~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~---v~~G~~G~k-- 584 (715)
T PRK11730 515 RDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAHHAQAV-MAEGFPDRM---KKDYRDAIDVL---FEAKRFGQK-- 584 (715)
T ss_pred HcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHHHHHHH-HHHhcCCcc---ccchhHHHHHH---HHCCCCccc--
Confidence 88888876443322211 24 2356666677655543321 111233211 11112244444 445766665
Q ss_pred HhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHhC--CChhhhhhh
Q 007987 402 LAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHP--FTAGVYAALMMAQIEILRKKG--HSYSEIINE 477 (582)
Q Consensus 402 ~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lRa~~~~~~~g~~~p--~t~gv~~~~~~a~~~~l~~~~--~~~s~~~~e 477 (582)
.++.||.-.. +. ..+.+..+-..+.+.++..... . .++.+ +.+=++..++---+.+ -++| -++++ ++.
T Consensus 585 -~g~GfY~y~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~nRll~~~~~Ea~~l-l~eGvva~~~d-ID~ 656 (715)
T PRK11730 585 -NGKGFYRYEE-DK--KGKPKKEVDPAVYELLAPVVQP-K-REFSDEEIIARMMIPMINEVVRC-LEEGIVASPAE-ADM 656 (715)
T ss_pred -cCCEeEeccc-CC--CcccccCCCHHHHHHHHHhccc-c-CCCCHHHHHHHHHHHHHHHHHHH-HhcCCcCCHHH-HHH
Confidence 2343432110 00 0011110001222333222210 0 01111 2344555554444444 4556 45544 465
Q ss_pred hHHHHhhh------cchhhhhccchhhhhccchhhhcc
Q 007987 478 SVIESVDS------LNPFMHARGVSFMVDNCSTTARLG 509 (582)
Q Consensus 478 ~~~e~~~~------l~p~~~~~~~~~m~~~~s~ta~~g 509 (582)
.....+-- ..-|+..-|++-+++.+..-+++|
T Consensus 657 a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~~~~ 694 (715)
T PRK11730 657 ALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYAHLG 694 (715)
T ss_pred HHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHcC
Confidence 55544431 122566679998888888655555
No 111
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.58 E-value=2.1e-07 Score=100.93 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=98.1
Q ss_pred ecccccccc-ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH
Q 007987 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (582)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~ 173 (582)
++|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++.. + ....++.. ..+++
T Consensus 135 ~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~-~----~~~~~~~~----~~~l~ 198 (409)
T PRK11790 135 HRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIED-K----LPLGNARQ----VGSLE 198 (409)
T ss_pred HcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCc-c----cccCCcee----cCCHH
Confidence 344554221 2357899 9999999999999999999877 99986655431 1 11123332 45899
Q ss_pred hhhccCCeEEEeccchhH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCCcEEEeccCCChhhH
Q 007987 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (582)
Q Consensus 174 Eav~~ADIVILaVPd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~v 244 (582)
|++++||+|++++|-... ..++. +.+..||+|++|+-. -|-. +..++++.+ -....||.--.|..+....
T Consensus 199 ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i-~gaalDVf~~EP~~~~~~~ 277 (409)
T PRK11790 199 ELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHL-AGAAIDVFPVEPKSNGDPF 277 (409)
T ss_pred HHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc-eEEEEcCCCCCCCCccccc
Confidence 999999999999996655 44665 688899999988744 3432 334444332 2235677766664332110
Q ss_pred H-HHHhhcccccCCCceEEEeeccC-CCHHHHH
Q 007987 245 R-RLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (582)
Q Consensus 245 R-~ly~~G~e~~G~Gv~aliAv~qd-~tgeale 275 (582)
. .++.. -+.+++||-. .|.++.+
T Consensus 278 ~~pL~~~--------~nvilTPHia~~t~ea~~ 302 (409)
T PRK11790 278 ESPLRGL--------DNVILTPHIGGSTQEAQE 302 (409)
T ss_pred cchhhcC--------CCEEECCcCCCCHHHHHH
Confidence 1 12222 3577888863 3444433
No 112
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.56 E-value=3.7e-06 Score=87.45 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=114.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------cCCHHhhhccCCeE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--d~t-------~~~~~Eav~~ADIV 182 (582)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+.-.+.|+... ++. ..+..+.....|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7899999999999999999998 99888877753 233445565421 110 11222346779999
Q ss_pred EEeccchhHHHHHHHHHhcCCCCcEE-EEecCchhh-hhhcccccCCCCCcEE------EeccCCChhhHHHHHhhcccc
Q 007987 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLG-HLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (582)
Q Consensus 183 ILaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~-~~~~~~i~~p~dv~VI------~v~Pngpg~~vR~ly~~G~e~ 254 (582)
|++||-.+..++++.+.+.++++.+| .+.-|+... .+.+ .+|+. +|+ .....+|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999888888999999999887755 566687532 3333 33432 233 33445666551 1
Q ss_pred cCCCceEEEeeccCCC-----HHHHHHHHHHHHHhCCCccccccccccccccchhhh---hhh----chHHHHHHHHHHH
Q 007987 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER---ILL----GAVHGIVESLFRR 322 (582)
Q Consensus 255 ~G~Gv~aliAv~qd~t-----geale~alala~aiG~~~~iettf~~E~~sDlfgEq---vLs----G~~pAlieAl~d~ 322 (582)
.|.|... |....... .+..+...+++...|.. .+...|+...+ .+. +.+.++.+.-...
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~--------~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~ 214 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID--------SQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDP 214 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC--------ceeCchHHHHHHhHhheecchhHHHHHhCCChHH
Confidence 1345433 44332222 34555566778887864 22344455554 332 3345555554444
Q ss_pred HHHcCCCHHHHH
Q 007987 323 FTENGMNEDLAY 334 (582)
Q Consensus 323 lVe~Gl~pe~Ay 334 (582)
+.+....++...
T Consensus 215 l~~~~~~~~l~~ 226 (313)
T PRK06249 215 LMADPDSRALIR 226 (313)
T ss_pred HHhCccHHHHHH
Confidence 555444344333
No 113
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.54 E-value=2.8e-06 Score=98.10 Aligned_cols=356 Identities=12% Similarity=0.100 Sum_probs=197.3
Q ss_pred CCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CC
Q 007987 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLr-ds~~~~g~G~~ViVg~r~~sks~~~-----------A~~~G~~~~d---------~t 168 (582)
.+++|+|||.|.||..+|..+. .. |++|++.+.+.. ..+. ..+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999987 77 999887765432 2222 2222211000 00
Q ss_pred cCCHHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 169 ~~~~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
..+. +++++||+||=++|.... .+++.++.++++|+++| +-++++.+..+.+ .....-+|+.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2334 567999999999997655 45999999999999988 4778888887765 233345799999988888731
Q ss_pred HHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHH
Q 007987 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTE 325 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe 325 (582)
.-= |.++...+++.++.+.++++.+|...+. .. +..-| +.-=.+.+++..+. .+++
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~----v~--d~pGf---i~nRl~~~~~~EA~-~lv~ 512 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIV----VR--DGAGF---YVNRILAPYINEAA-RLLL 512 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEE----Ee--ccCcH---HHHHHHHHHHHHHH-HHHH
Confidence 111 4568889999999999999999975211 11 11111 11122233433333 5677
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHHH
Q 007987 326 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVL 402 (582)
Q Consensus 326 ~Gl~pe~Ay~~~~~ei---~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~i~ 402 (582)
.|+++++-=. ++... .| .-.++-..|++.+++.... -...+++. +.|. ..+++. |..|.+.++
T Consensus 513 eGv~~~dID~-a~~~~G~p~G-Pf~~~D~~Gld~~~~i~~~-l~~~~~~~----~~~~-~~l~~~---v~~g~~G~k--- 578 (708)
T PRK11154 513 EGEPIEHIDA-ALVKFGFPVG-PITLLDEVGIDVGTKIIPI-LEAALGER----FSAP-AAFDKL---LNDDRKGRK--- 578 (708)
T ss_pred cCCCHHHHHH-HHHHcCCCCC-HHHHHHHhhhHHHHHHHHH-HHHHcCCC----CCCC-HHHHHH---HHCCCCccc---
Confidence 7887654322 22211 13 2345555666554443321 11223332 2221 234443 445666655
Q ss_pred hcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhH-----HHHHHHHHHHHHHHHhCC--Chhhhh
Q 007987 403 AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAG-----VYAALMMAQIEILRKKGH--SYSEII 475 (582)
Q Consensus 403 e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lRa~~~~~~~g~~~p~t~g-----v~~~~~~a~~~~l~~~~~--~~s~~~ 475 (582)
.++.||+-.+ . -+.++...-..+-+.++. .+..+++.| ++.+++---+.+ -++|. ++ |-+
T Consensus 579 ~g~GfY~y~~-~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~i~~Rll~~~~nEa~~l-l~eGvva~~-~dI 645 (708)
T PRK11154 579 NGRGFYLYGQ-K---GKKSKKQVDESVYPLLGI-------TPQSRLSANEIAERCVMLMLNEAVRC-LDEGIIRSA-RDG 645 (708)
T ss_pred CCceEEECCC-C---cccccccCCHHHHHHhcc-------CCCCCCCHHHHHHHHHHHHHHHHHHH-HHCCCcCCH-HHH
Confidence 2344432211 0 000111111112222211 122345555 444444444445 45664 44 455
Q ss_pred hhhHHHHhhh------cchhhhhccchhhhhccchhhh-ccccccccchhHHHHHHHHhhhcCCCc
Q 007987 476 NESVIESVDS------LNPFMHARGVSFMVDNCSTTAR-LGSRKWAPRFDYILTQQALVAVDNDAP 534 (582)
Q Consensus 476 ~e~~~e~~~~------l~p~~~~~~~~~m~~~~s~ta~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (582)
|..+.-.+-- ..-|+..-|++-++..+..-++ +|. .|.| .+.| ...+++|..
T Consensus 646 D~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p--~~~l----~~~~~~~~~ 704 (708)
T PRK11154 646 DIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTP--CERL----VEMAERGES 704 (708)
T ss_pred HHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCC--CHHH----HHHHHcCCC
Confidence 6666544432 2236677899999988887765 565 4555 2233 334566653
No 114
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.52 E-value=1.1e-05 Score=93.28 Aligned_cols=342 Identities=11% Similarity=0.094 Sum_probs=187.3
Q ss_pred CCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC---------CC
Q 007987 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLr-ds~~~~g~G~~ViVg~r~~sks~~~A-----------~~~G~~~~d---------~t 168 (582)
.+++|+|||.|.||..+|.-+. .+ |++|++.+.+.. ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 57 999987765532 22221 122211000 00
Q ss_pred cCCHHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHH
Q 007987 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (582)
Q Consensus 169 ~~~~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR 245 (582)
..++ +++++||+||=++|.... .+++.+|-++++++++| +-++++.+..+.+ .....-+|+.+|+-.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 568999999999997765 35999999999999987 4778888877765 233335799999988888731
Q ss_pred HHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHH
Q 007987 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTE 325 (582)
Q Consensus 246 ~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe 325 (582)
.-= |..+...+++.++.+.+++..+|...+ .+. +..-|- .--.+.+++..+ -.+++
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv----~v~--d~pGfi---~nRl~~~~~~Ea-~~l~~ 507 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPI----VVA--DKAGFY---VNRILAPYMNEA-ARLLL 507 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEE----EEc--cccchH---HHHHHHHHHHHH-HHHHH
Confidence 111 455778899999999999999997511 111 111121 112222333222 23467
Q ss_pred cCCCHHHHHHHH--HHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHHHh
Q 007987 326 NGMNEDLAYKNT--VECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLA 403 (582)
Q Consensus 326 ~Gl~pe~Ay~~~--~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~i~e 403 (582)
.|.++++.=... +.--.| .-.++-..|++.+++.... -..+||+. +.|. +.+++. |..|.+.++.
T Consensus 508 ~G~~~~dID~a~~~~G~p~G-Pf~l~D~vGld~~~~i~~~-l~~~~~~~----~~~~-~~l~~~---v~~G~lG~ks--- 574 (699)
T TIGR02440 508 EGEPVEHIDKALVKFGFPVG-PITLLDEVGIDVGAKISPI-LEAELGER----FKAP-AVFDKL---LSDDRKGRKN--- 574 (699)
T ss_pred CCCCHHHHHHHHHHcCCCcC-HHHHHHHhchHHHHHHHHH-HHHhcCCC----CCCc-HHHHHH---HHCCCCcccC---
Confidence 888776543332 111113 3445566666555443321 11234442 2332 244543 4456666542
Q ss_pred cccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhH-----HHHHHHHHHHHHHHHhCC--Chhhhhh
Q 007987 404 GRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAG-----VYAALMMAQIEILRKKGH--SYSEIIN 476 (582)
Q Consensus 404 ~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lRa~~~~~~~g~~~p~t~g-----v~~~~~~a~~~~l~~~~~--~~s~~~~ 476 (582)
++.||+-.+-.. ..+.|..=.++.... +..+++.| ++.+++---..+ -++|. ++ |-+|
T Consensus 575 g~GfY~y~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~g~v~~Rll~~~~~Ea~~l-l~eGvva~~-~dID 639 (699)
T TIGR02440 575 GKGFYLYGAATK-------KKAVDESVYGLLGIK------PGVDKEASAVAERCVMLMLNEAVRC-LDEGVIRSP-RDGD 639 (699)
T ss_pred CcEEEeCCCCCC-------cCCCCHHHHHHhCcC------CCCCCCHHHHHHHHHHHHHHHHHHH-HHCCCcCCH-HHHH
Confidence 333321111000 001111111111111 12245555 444444444444 45564 55 4456
Q ss_pred hhHHHHhhh------cchhhhhccchhhhhccchhh-hcccccccc
Q 007987 477 ESVIESVDS------LNPFMHARGVSFMVDNCSTTA-RLGSRKWAP 515 (582)
Q Consensus 477 e~~~e~~~~------l~p~~~~~~~~~m~~~~s~ta-~~g~~~~~~ 515 (582)
....-..-- ...|+..-|++-+++.+..-+ ++|. .|.|
T Consensus 640 ~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~-~~~p 684 (699)
T TIGR02440 640 IGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD-RFTP 684 (699)
T ss_pred HHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CcCC
Confidence 555544422 224566678888888777654 3554 4444
No 115
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.52 E-value=2.3e-06 Score=93.42 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=111.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec------------CCCcCCHHhhhccC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~------------d~t~~~~~Eav~~A 179 (582)
+||+|||+|.||..+|.+|.+ |++|++.+++..+ .+... .|..+- .-.+.+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~~~~-ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVNKKR-ILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCCHHH-HHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 789999999999999999754 6787665554333 33333 443200 00133445678999
Q ss_pred CeEEEeccchh-------HHHHH---HHHHhcCCCCcEEEEec----Cchhh----hhhc-ccccCCCCCcEEEe---cc
Q 007987 180 DLVLLLISDAA-------QADNY---EKIFSCMKPNSILGLSH----GFLLG----HLQS-MGLDFPKNIGVIAV---CP 237 (582)
Q Consensus 180 DIVILaVPd~a-------~~~Vl---~eI~~~Lk~GaiL~~a~----G~~i~----~~~~-~~i~~p~dv~VI~v---~P 237 (582)
|+||+++|... ...++ +.|.+++++|++|++.+ |..-. .+++ .++.. .-++..+ .|
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~--~~~~~~~~~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTF--NQDFYVGYSPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCc--CCCeeEeeCCCc
Confidence 99999999551 12343 46899999999887665 33321 2221 11211 1233333 34
Q ss_pred CCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCc-cccccccccccccchhhhhhhchHHH--
Q 007987 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERILLGAVHG-- 314 (582)
Q Consensus 238 ngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~-~iettf~~E~~sDlfgEqvLsG~~pA-- 314 (582)
-.+|..+.++. -.+- +.... +.+..+.+..+...+.... +..++ ..+-+.-. .+.++.-+
T Consensus 156 v~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~AE~~K----l~~N~~~av~ 218 (425)
T PRK15182 156 INPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAES-IKVAEAAK----VIENTQRDLN 218 (425)
T ss_pred CCCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecC-HHHHHHHH----HHHHHHHHHH
Confidence 44555432111 1233 33343 4677788888888886321 12222 11111111 34445444
Q ss_pred --HHHHHHHHHHHcCCCHHHHHHH
Q 007987 315 --IVESLFRRFTENGMNEDLAYKN 336 (582)
Q Consensus 315 --lieAl~d~lVe~Gl~pe~Ay~~ 336 (582)
++-.++..+-+.|++.++.+.-
T Consensus 219 Ia~~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 219 IALVNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5666777777889998876654
No 116
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.51 E-value=5.6e-06 Score=87.04 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=109.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceecC---------CCcCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s----------ks~~~A~~~G~~~~d---------~t~~~ 171 (582)
+++|+|||.|.||+.+|..+... |++|++.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999998877 899888776522 223333334422110 00122
Q ss_pred HHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHH
Q 007987 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly 248 (582)
+. ++++||+||=+++-..- .+++.++-.+.+|+++| +-.+++++..+.+. ....-+|+..|+--|.+.
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~---~~rper~iG~HFfNP~~~----- 147 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA---LKRPERFIGLHFFNPVPL----- 147 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH---hCCchhEEEEeccCCCCc-----
Confidence 22 78999999999995544 46999999999999998 57888888777552 222346999999888887
Q ss_pred hhcccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 249 ~~G~e~~G~Gv~al-iAv~qd~tgeale~alala~aiG~~ 287 (582)
++.+ +......+++.++.+.+++..+|.+
T Consensus 148 ----------m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 148 ----------MPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ----------ceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3332 3445677889999999999999953
No 117
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.49 E-value=3.3e-07 Score=96.20 Aligned_cols=142 Identities=21% Similarity=0.164 Sum_probs=95.4
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..|.| |+|||||+|++|..+|+.++.. |++|+++++.... ..+. ..+++|++++||+|+++
T Consensus 144 ~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-----~~~l~ell~~sDiv~l~ 204 (317)
T PRK06487 144 VELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-----RLPLDELLPQVDALTLH 204 (317)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc-----ccCHHHHHHhCCEEEEC
Confidence 46899 9999999999999999999876 9998765543211 1122 34789999999999999
Q ss_pred ccchhHH-HHHH-HHHhcCCCCcEEEE-ecCch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHh-hccccc
Q 007987 186 ISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV-QGKEIN 255 (582)
Q Consensus 186 VPd~a~~-~Vl~-eI~~~Lk~GaiL~~-a~G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~-~G~e~~ 255 (582)
+|-.... .++. +.+..||+|++|+- +-|-. +..++++.+ ....+||.-..|-.+.+. ++. +-
T Consensus 205 lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i-~gAaLDVf~~EP~~~~~p---l~~~~~---- 276 (317)
T PRK06487 205 CPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHL-GGAATDVLSVEPPVNGNP---LLAPDI---- 276 (317)
T ss_pred CCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe-eEEEeecCCCCCCCCCCc---hhhcCC----
Confidence 9966554 4665 68889999998874 44532 334444322 234678888888544433 222 11
Q ss_pred CCCceEEEeecc-CCCHHHHHHH
Q 007987 256 GAGINSSFAVHQ-DVDGRATNVA 277 (582)
Q Consensus 256 G~Gv~aliAv~q-d~tgeale~a 277 (582)
-+.+++||- ..+.+..+..
T Consensus 277 ---pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 277 ---PRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred ---CCEEECCccccCCHHHHHHH
Confidence 366788885 3344544433
No 118
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.49 E-value=1.3e-07 Score=87.12 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=67.0
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+..++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 566 8999999999999999999987 6 5677776654443444444443100001456777789999999999
Q ss_pred cchhH-HHHHHHHHhcCCCCcEEEEecCc
Q 007987 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 187 Pd~a~-~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+..+ .+-.......++++++|++++-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 99886 11110012336789888877543
No 119
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.49 E-value=5.5e-07 Score=93.45 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=71.3
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..++| ++|+|||+|.+|.++|+.|+.. |.+|++.+|+..+ .+.+.+.|+.. -...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~--~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIP--FPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCee--ecHHHHHHHhccCCEEEEC
Confidence 46788 9999999999999999999988 8898888876433 44455566652 0123567888999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|...+. ++..+.|+++.+|++.+
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDla 240 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLA 240 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeC
Confidence 9975321 35667789999888775
No 120
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.48 E-value=5.6e-07 Score=95.32 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=88.5
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
...++| |+|||+|+|++|..+|+.|... |..+.+..| .+...+.+.+.+.. ..+.++.+.++|+|++
T Consensus 157 g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r-~~~~~~~~~~~~~~-----~~d~~~~~~~sD~ivv 223 (336)
T KOG0069|consen 157 GYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSR-TQLPPEEAYEYYAE-----FVDIEELLANSDVIVV 223 (336)
T ss_pred cccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeecc-cCCchhhHHHhccc-----ccCHHHHHhhCCEEEE
Confidence 477899 9999999999999999999987 854444444 34446666666665 4688999999999999
Q ss_pred eccchhHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCCcEEEecc
Q 007987 185 LISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (582)
Q Consensus 185 aVPd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~~~~~~i~~p~dv~VI~v~P 237 (582)
+.|..... .+++ ++..+||+|.+|+ .+=|-- ..-+.++. ....+.||.--.|
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~-i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 224 NCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGK-IAGAGLDVFEPEP 284 (336)
T ss_pred ecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCC-cccccccccCCCC
Confidence 99988775 4776 7899999999877 444432 22333322 2445788888888
No 121
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.44 E-value=4.6e-07 Score=87.15 Aligned_cols=96 Identities=23% Similarity=0.265 Sum_probs=68.1
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.-.|.| |++.|+|||..|..+|+.||.. |.+|+|...++ -..-+|...||. +.+.+++++++|+||.
T Consensus 18 ~~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DP-i~alqA~~dGf~-----v~~~~~a~~~adi~vt 84 (162)
T PF00670_consen 18 NLMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDP-IRALQAAMDGFE-----VMTLEEALRDADIFVT 84 (162)
T ss_dssp -S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSH-HHHHHHHHTT-E-----EE-HHHHTTT-SEEEE
T ss_pred ceeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECCh-HHHHHhhhcCcE-----ecCHHHHHhhCCEEEE
Confidence 356788 9999999999999999999998 99998887654 445667789998 4689999999999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
+|-...+ +-.+.+..||+|++|..+..|.
T Consensus 85 aTG~~~v--i~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 85 ATGNKDV--ITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp -SSSSSS--B-HHHHHHS-TTEEEEESSSST
T ss_pred CCCCccc--cCHHHHHHhcCCeEEeccCcCc
Confidence 9987553 1235667799999998777664
No 122
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.44 E-value=1.4e-05 Score=82.57 Aligned_cols=199 Identities=17% Similarity=0.194 Sum_probs=136.4
Q ss_pred HHcCceecCCCcCCHHhhhccCCeEEEeccchh-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCCcE
Q 007987 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGV 232 (582)
Q Consensus 158 ~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-~~~~~i~~p~dv~V 232 (582)
++.|+.+ +.|-.|+++++|++|+=+|-.. +.++.++|.++++.|++|+.+.-++ +.+ ++. .=++|+.|
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgI 197 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNV 197 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCe
Confidence 3478886 5677899999999999999766 7899999999999999998665443 222 222 23689999
Q ss_pred EEeccCC-ChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhc
Q 007987 233 IAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLG 310 (582)
Q Consensus 233 I~v~Png-pg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG 310 (582)
...||-+ |++. |-.. ++ ..-+++++.+....+++..|.. -|+ ...|+.+.. -.|-
T Consensus 198 sS~HPaaVPgt~--------------Gq~~-i~-egyAtEEqI~klveL~~sa~k~-----ay~--~PA~lvspV~DMgS 254 (342)
T PRK00961 198 TSYHPGAVPEMK--------------GQVY-IA-EGYADEEAVEKLYEIGKKARGN-----AFK--MPANLIGPVCDMCS 254 (342)
T ss_pred eccCCCCCCCCC--------------Ccee-cc-cccCCHHHHHHHHHHHHHhCCC-----eee--cchhhcchhhhHHH
Confidence 9999933 2222 2222 22 4577999999999999999985 221 233444432 1222
Q ss_pred hHHHH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHH
Q 007987 311 AVHGI----VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILY 385 (582)
Q Consensus 311 ~~pAl----ieAl~d~lVe-~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~ 385 (582)
.+.+. +-.-++.+++ .|-|.+++-..+.++|.. ++.++...|+..|.+.+... +--|.+-|--..|..+++.
T Consensus 255 ~VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLnPe--aL~~tAdSM~~~~~q~~L~ 331 (342)
T PRK00961 255 AVTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALDPG--ALLGTADSMCFGPLADILP 331 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcCHH--HHhhhhhhcccchHHHHHH
Confidence 23332 5555666665 599999999999998864 99999999999999998762 2233322222345555555
Q ss_pred HHHH
Q 007987 386 ECYE 389 (582)
Q Consensus 386 e~~~ 389 (582)
..|+
T Consensus 332 ~aL~ 335 (342)
T PRK00961 332 TALK 335 (342)
T ss_pred HHHH
Confidence 4444
No 123
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.42 E-value=1.9e-06 Score=98.85 Aligned_cols=122 Identities=13% Similarity=-0.060 Sum_probs=94.2
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCC-CcEEEeccCCChhhHHHHHhhcccccCCCce
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~d-v~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ 260 (582)
||||+|+....++++++.++++++++|+|+.+++-..++...-.++.+ .+||..|| +.|.+ ...|+.....+.+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 799999999999999999999999999999999743332211134433 57999999 33444 2344444444456899
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh
Q 007987 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER 306 (582)
Q Consensus 261 aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq 306 (582)
+++|+.++.+.++++.+++++..+|+ +++.++.++|++.-.+..+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~A~iSh 123 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVFAAVSH 123 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHHHHHhh
Confidence 99999999999999999999999995 5888888888887666655
No 124
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.41 E-value=1.9e-05 Score=81.73 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=138.3
Q ss_pred HHcCceecCCCcCCHHhhhccCCeEEEeccchh-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCCcE
Q 007987 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGV 232 (582)
Q Consensus 158 ~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-~~~~~i~~p~dv~V 232 (582)
+..|+.+ +.|-.|+++++|++|+=+|-.. +.++.++|.++++.|++|+.+.-++ +.+ ++. .=++|+.|
T Consensus 123 EdaGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~---l~R~DvgV 195 (340)
T TIGR01723 123 EDLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED---LGREDLNV 195 (340)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh---hCcccCCe
Confidence 3578886 5677899999999999999766 7899999999999999998665443 222 222 22589999
Q ss_pred EEeccCC-ChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhc
Q 007987 233 IAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLG 310 (582)
Q Consensus 233 I~v~Png-pg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG 310 (582)
...||-+ |++. |- .++ ...-+++++.+....+++.+|.. -|+ ...|+.+.. -.|-
T Consensus 196 sS~HPaaVPgt~--------------~q-~Yi-~egyAtEEqI~klveL~~sa~k~-----ay~--~PA~LvspV~DMgS 252 (340)
T TIGR01723 196 TSYHPGCVPEMK--------------GQ-VYI-AEGYASEEAVNKLYELGKKARGK-----AFK--MPANLLGPVCDMCS 252 (340)
T ss_pred eccCCCCCCCCC--------------Cc-eEe-ecccCCHHHHHHHHHHHHHhCCC-----eee--cchhhccchhhHHH
Confidence 9999933 2222 21 223 36788999999999999999985 221 333344432 1222
Q ss_pred hHHHH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHH
Q 007987 311 AVHGI----VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILY 385 (582)
Q Consensus 311 ~~pAl----ieAl~d~lVe-~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~ 385 (582)
.+.+. +-.-++..++ .|-|.+++-..+.++|+. ++.++.++|+..|.+.+.. .+--|.+-|--..|..+++.
T Consensus 253 ~VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLnP--eaL~~tAdSM~~~~~q~~L~ 329 (340)
T TIGR01723 253 AVTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALDP--AALLGTADSMNFGPLADILP 329 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH--HHHhhhhhhcccchHHHHHH
Confidence 23332 5555666665 599999999999999864 9999999999999999876 22333332223355555665
Q ss_pred HHHHh
Q 007987 386 ECYED 390 (582)
Q Consensus 386 e~~~~ 390 (582)
..|+-
T Consensus 330 ~aL~v 334 (340)
T TIGR01723 330 TALEV 334 (340)
T ss_pred HHHHH
Confidence 55443
No 125
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.40 E-value=6.6e-07 Score=96.40 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..++| +||||||+|+||+.+|+.|+.. |++|++.++.... ...+.. ..++++++++||+|++.
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 35789 9999999999999999999987 9998766532111 111112 46899999999999999
Q ss_pred ccchh-----HHHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccC
Q 007987 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (582)
Q Consensus 186 VPd~a-----~~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pn 238 (582)
+|-.. ...++. +.+..||+|++|+-++ |-. +..++++.+ .....||.--.|.
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~-~ga~LDV~e~EP~ 239 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK-LSVVLDVWEGEPE 239 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC-cEEEEecCCCCCC
Confidence 99544 334564 6888999999988554 432 334433222 2235677777774
No 126
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.38 E-value=2.8e-06 Score=89.66 Aligned_cols=169 Identities=20% Similarity=0.150 Sum_probs=116.8
Q ss_pred eeeccccccccc-cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007987 93 IVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (582)
Q Consensus 93 i~~~~r~~f~~~-~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~ 171 (582)
-++.|+|...+. .-.+.| ||+||||+|.+|+-+|..++.- |..++.++.- ...+++++.|+. ..+
T Consensus 128 s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq-----~vs 193 (406)
T KOG0068|consen 128 SMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ-----LVS 193 (406)
T ss_pred eeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce-----eee
Confidence 356678877544 788999 9999999999999999999987 8887665554 346788889998 689
Q ss_pred HHhhhccCCeEEEeccchhHH-HHHH-HHHhcCCCCcEEEEec-C-c-----hhhhhhcccccCCCCCcEEEeccCCChh
Q 007987 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-G-F-----LLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~~-~Vl~-eI~~~Lk~GaiL~~a~-G-~-----~i~~~~~~~i~~p~dv~VI~v~Pngpg~ 242 (582)
.+|+++.||+|-|.+|-.... .++. +-+..||+|..|+-++ | + .+.-++++++ -..-+||.-..|...+.
T Consensus 194 l~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~v-aGaAlDVy~~Epp~~~~ 272 (406)
T KOG0068|consen 194 LEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQV-AGAALDVYPEEPPKNGW 272 (406)
T ss_pred HHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcc-cceeeecccCCCCccch
Confidence 999999999999999965554 4665 6778899999777443 3 3 2334444322 34457788777766542
Q ss_pred hHHHHHhhcccccCCCceEEEeeccCCCH-H-----HHHHHHHHHHHhC
Q 007987 243 SVRRLYVQGKEINGAGINSSFAVHQDVDG-R-----ATNVALGWSVALG 285 (582)
Q Consensus 243 ~vR~ly~~G~e~~G~Gv~aliAv~qd~tg-e-----ale~alala~aiG 285 (582)
. +++- +. -+.+.+||+..+- | +.|.++++...+.
T Consensus 273 ~-~~Lv-~h-------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~ 312 (406)
T KOG0068|consen 273 D-SELV-SH-------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYIN 312 (406)
T ss_pred h-HHHh-cC-------CceeecCccccchHHHHHHHHHHHHHHHHHHhc
Confidence 2 2222 21 3556789986554 2 3344444444444
No 127
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=4.8e-06 Score=84.67 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=106.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhh---ccCCeEEEeccc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav---~~ADIVILaVPd 188 (582)
++||.||+|.||..+.++|.+. |++++ +++.+....+.+..+|.+. +.+++|.+ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 5899999999999999999999 99875 5555667788889999774 56666655 346799999998
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEecCchhhh-hhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 189 ~a~-~~Vl~eI~~~Lk~GaiL~~a~G~~i~~-~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
..+ .++++++.+.|.+|.+|++-.-.+.+. +......-.++++++-+=-.+-..-. --.+++-+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~-------------~~G~~lMiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGA-------------ERGYCLMIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhh-------------hcCceEEec
Confidence 844 579999999999999998876443221 11111134578888865443321111 112234555
Q ss_pred cCCCHHHHHHHHHHHHHhCC
Q 007987 267 QDVDGRATNVALGWSVALGS 286 (582)
Q Consensus 267 qd~tgeale~alala~aiG~ 286 (582)
. ++++.+...-+|+++--
T Consensus 137 G--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 137 G--DEEAVERLEPIFKALAP 154 (300)
T ss_pred C--cHHHHHHHHHHHHhhCc
Confidence 5 68999999999999874
No 128
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.36 E-value=7.9e-07 Score=95.86 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=91.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..++| ++|||||+|+||..+|+.|+.. |++|++.++.... ...+.. ..+++|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~~~~~~-----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----AEGDGD-----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccCcc-----ccCHHHHHhhCCEEEEe
Confidence 45788 9999999999999999999987 9998766542211 111122 46899999999999999
Q ss_pred ccchh-----HHHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcc
Q 007987 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (582)
Q Consensus 186 VPd~a-----~~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~ 252 (582)
+|... ...++. +.+..||+|++|+-++ |-. +..++++.+ ....+||..-.|. +.+. +.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i-~~a~LDV~e~EP~-~~~~---L~---- 245 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGED-LDAVLDVWEGEPQ-IDLE---LA---- 245 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC-cEEEEeCCCCCCC-CChh---hh----
Confidence 99654 334564 6888899999987553 432 233333211 2235677776774 2222 11
Q ss_pred cccCCCceEEEeecc-CCCHHHHH
Q 007987 253 EINGAGINSSFAVHQ-DVDGRATN 275 (582)
Q Consensus 253 e~~G~Gv~aliAv~q-d~tgeale 275 (582)
..+.+++||- ..+.+...
T Consensus 246 -----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 246 -----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred -----hCCEEEcCccccCCHHHHH
Confidence 1367788886 34545443
No 129
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.32 E-value=1.1e-05 Score=88.94 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHHhhhcc---CCeEEEeccchhH-HH
Q 007987 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (582)
Q Consensus 122 mG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~----G~~~~d~t~~~~~Eav~~---ADIVILaVPd~a~-~~ 193 (582)
||.+||+||.+. |++|.|++|+.++..+..... |+.. +.+++|+++. +|+||+++|+... .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999888766554444332 4654 6789998875 8999999998766 56
Q ss_pred HHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCC
Q 007987 194 NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (582)
Q Consensus 194 Vl~eI~~~Lk~GaiL~~a~G~~----i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~ 269 (582)
|++++.++|.+|.+|++.+-.. ....+. .-.+++.+| -+|-.-|.. .= -.|. + +-+..
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~---l~~~Gi~fv-dapVSGG~~---gA-------~~G~-s-iM~GG-- 132 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKE---LAEKGIHFI-GMGVSGGEE---GA-------LHGP-S-IMPGG-- 132 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHH---HHhcCCeEE-ecCCCCCHH---HH-------hcCC-E-EEEeC--
Confidence 8889999999999999886432 111111 123567766 455222222 01 1354 4 45566
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 007987 270 DGRATNVALGWSVALGSP 287 (582)
Q Consensus 270 tgeale~alala~aiG~~ 287 (582)
+.++.+.++-+++++|..
T Consensus 133 ~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 133 QKEAYELVAPILEKIAAK 150 (459)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 578999999999999974
No 130
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.31 E-value=2.4e-06 Score=94.35 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=86.5
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..+.| ++|+|||+|.+|..+|+.|+.. |.+|++..+...+ ...+...|+. ..+++++++++|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 46889 9999999999999999999987 9988777654333 3355667886 46789999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhh
Q 007987 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 186 VPd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~ 243 (582)
+.. ..++. +.+..||+|.+|+.++-+....... .+....++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~-aL~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVA-ELEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHH-HHHhcCCceeecccCCCCeEE
Confidence 753 34665 6788899999988665443211101 011113678888888765444
No 131
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.24 E-value=1.9e-05 Score=85.41 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=62.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----------------cCceecCCCcCCHHhh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~----------------~G~~~~d~t~~~~~Ea 175 (582)
+||+|||+|.||..+|..+ .. |++|++.+++. ...+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d~-~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDILP-SRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECCH-HHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 4799999999999999655 46 88886655543 33343332 11111 001336778
Q ss_pred hccCCeEEEeccch-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 176 v~~ADIVILaVPd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
++++|+||+++|.. ...++++.|.+ +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999954 44567778877 6899988766533
No 132
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.24 E-value=2.3e-06 Score=76.63 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccccccchhhhhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007987 296 QEYRSDIFGERILLGAVHGI----VESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 365 (582)
Q Consensus 296 ~E~~sDlfgEqvLsG~~pAl----ieAl~d~lVe~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi--~~m~d~vS~~~ 365 (582)
+|.+.|.++ +++||+||| ++++.+.+++.|+++++|.+++.|++.| .++++.+++. ..+++.|+.+.
T Consensus 2 ~E~~~d~~t--alsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tPg 74 (107)
T PF14748_consen 2 DEDQFDAAT--ALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTPG 74 (107)
T ss_dssp SGGGHHHHH--HHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-TT
T ss_pred CHHHHhHHH--HHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCCC
Confidence 466666666 799999995 8999999999999999999999999998 8999998875 89999999754
No 133
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.19 E-value=9.1e-06 Score=88.42 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.7
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..++..+ ...|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999988 9998877655443 4667778987 456788999999999988
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 007987 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 187 Pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (582)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44565 5788899999988665544
No 134
>PLN02306 hydroxypyruvate reductase
Probab=98.18 E-value=5.6e-06 Score=89.48 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=92.8
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCc-------eecC-CCcCCHHhhh
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYETI 176 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-A~~~G~-------~~~d-~t~~~~~Eav 176 (582)
..+.| ++|||||+|.+|..+|+.|+.. +|++|++.++........ ....|. ...+ ....+++|++
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~-----fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEG-----FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 56899 9999999999999999998632 388987665542211111 011221 0000 0134799999
Q ss_pred ccCCeEEEeccchhH-HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCCcEEEeccCCChhhHHHH
Q 007987 177 SGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (582)
Q Consensus 177 ~~ADIVILaVPd~a~-~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~l 247 (582)
++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..++++.+ ....+||.--.|- |.+. +
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~~---L 309 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKPG---L 309 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccch---H
Confidence 999999999996554 44665 6888999999988543 432 334444322 2345677777773 2221 3
Q ss_pred HhhcccccCCCceEEEeecc-CCCHHHHH
Q 007987 248 YVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (582)
Q Consensus 248 y~~G~e~~G~Gv~aliAv~q-d~tgeale 275 (582)
+.. -+.+++||- ..|.+..+
T Consensus 310 ~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 310 ADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred hhC--------CCEEECCccccCcHHHHH
Confidence 322 367788885 34444433
No 135
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.12 E-value=1.2e-05 Score=83.88 Aligned_cols=94 Identities=22% Similarity=0.360 Sum_probs=72.6
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..+.| ++++|||+|.+|.+++..|+.. |.+|++.+|+..+ .+.+...|+... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~~-~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSAH-LARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 44678 9999999999999999999988 8888888776433 566777787631 123567888999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|+.. +-++....|+++.+|++.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2346777899999988765
No 136
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.12 E-value=1.5e-05 Score=87.24 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
.+.| ++|+|||+|.+|..+|+.|+.. |.+|++.++...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999988 9998887665444 4556667887 457889999999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 007987 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 187 Pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (582)
... .++. +....||+|.+|+.++.+.
T Consensus 276 G~~---~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GNK---DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCH---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 653 3565 6788899999988776665
No 137
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.11 E-value=1.2e-05 Score=82.41 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=62.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~-sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
|++|||||+|.||..++.+|.+. +.+++++...+.+ .+..+.+...|... +.+.++++.+.|+|++++|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 46899999999999999999875 1135544333333 33333344455543 568888889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecC
Q 007987 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (582)
Q Consensus 190 a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (582)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 98887776544 344 4444444
No 138
>PLN02494 adenosylhomocysteinase
Probab=98.09 E-value=1.3e-05 Score=88.51 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=84.2
Q ss_pred ccchhhhhhhccccccceeeeccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH
Q 007987 75 ETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (582)
Q Consensus 75 ~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~ 154 (582)
|-...+..--+.-|+.+.+|.+ ........+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ .
T Consensus 222 nds~~K~~fDn~yGtgqS~~d~---i~r~t~i~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~ 290 (477)
T PLN02494 222 NDSVTKSKFDNLYGCRHSLPDG---LMRATDVMIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-A 290 (477)
T ss_pred cChhhhhhhhccccccccHHHH---HHHhcCCccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-h
Confidence 4444444333455665655543 11222334789 9999999999999999999987 9888776554333 3
Q ss_pred HHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 155 AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 155 ~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..|...|+.. .+.+++++++|+||.++..... +..+.+..||+|.+|+.++-+
T Consensus 291 ~eA~~~G~~v-----v~leEal~~ADVVI~tTGt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 291 LQALMEGYQV-----LTLEDVVSEADIFVTTTGNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred HHHHhcCCee-----ccHHHHHhhCCEEEECCCCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 5677788873 4788999999999997765422 235677889999998766543
No 139
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.07 E-value=9.6e-05 Score=81.99 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=110.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-----------------C--ceecCCCcCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------------G--FTEENGTLGD 171 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~-----------------G--~~~~d~t~~~ 171 (582)
|++|+|||+|.+|..+|..|.+. |.|++|+..+ .++...+...+. | +.. ..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD-~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVD-ISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEE-CCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 47999999999999999999876 3457775444 333222221111 1 111 245
Q ss_pred HHhhhccCCeEEEecc-ch--------------hHHHHHHHHHhcCCCCcEEEEec----CchhhhhhcccccCCCCCc-
Q 007987 172 IYETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSMGLDFPKNIG- 231 (582)
Q Consensus 172 ~~Eav~~ADIVILaVP-d~--------------a~~~Vl~eI~~~Lk~GaiL~~a~----G~~i~~~~~~~i~~p~dv~- 231 (582)
..+++++||++|+||| |. .+..+.++|.+++++|++|++-+ |..- .+......-.++.+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCe
Confidence 6778999999999986 22 34557778999999999876554 4431 11110000011233
Q ss_pred EEEecc--CCChhhHHHHHhhcccccCCCceEEE-eeccC-CCHHHHHHHHHHHHHhCC-Cccccccccccccccchhhh
Q 007987 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGER 306 (582)
Q Consensus 232 VI~v~P--ngpg~~vR~ly~~G~e~~G~Gv~ali-Av~qd-~tgeale~alala~aiG~-~~~iettf~~E~~sDlfgEq 306 (582)
.|...| -.||..+++.+. .+-++ ....+ ...++.+.+.++...+-. ..++.|+. ++-++-.
T Consensus 151 ~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K---- 216 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSK---- 216 (473)
T ss_pred EEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHH----
Confidence 244566 345555544332 45433 32222 225678888888887742 22333332 2222222
Q ss_pred hhhchHHH----HHHHHHHHHHHcCCCHHHH
Q 007987 307 ILLGAVHG----IVESLFRRFTENGMNEDLA 333 (582)
Q Consensus 307 vLsG~~pA----lieAl~d~lVe~Gl~pe~A 333 (582)
...++.-+ |+..+.+..-+.|++..+.
T Consensus 217 ~~eN~~ra~~Iaf~NEla~lce~~giD~~eV 247 (473)
T PLN02353 217 LAANAFLAQRISSVNAMSALCEATGADVSQV 247 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 33444433 5666666666777766543
No 140
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.05 E-value=0.00018 Score=75.63 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=102.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc--------CCHHhhhccCCeEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--------GDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~--------~~~~Eav~~ADIVI 183 (582)
+||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-++.|....+..- .+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 5899999999999999999998 8666665554 225666667875432111 12234566899999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEE-EEecCch-hhhhhcccccCCCCCcEE-Eecc-----CCChhhHHHHHhhccccc
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVI-AVCP-----KGMGPSVRRLYVQGKEIN 255 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-i~~~~~~~i~~p~dv~VI-~v~P-----ngpg~~vR~ly~~G~e~~ 255 (582)
++||-.+..++++.+.|.+++.+.| ++--|.. .+.+.+ .+|.. .++ .+.+ ++|+.++ ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 9999999999999999999999865 4556774 333433 34444 232 2333 4555552 11
Q ss_pred CCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh
Q 007987 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER 306 (582)
Q Consensus 256 G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq 306 (582)
|.|... +........+..+...+.++..|.. -|...|+....
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~--------~~~~~di~~~~ 181 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE--------VELHPDILAAI 181 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC--------eEEcHHHHHHH
Confidence 334444 3322222224455555556666653 34555555544
No 141
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.04 E-value=1.4e-05 Score=78.04 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=59.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--------------CC---CcCCHHh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--------------d~---t~~~~~E 174 (582)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+. ...|...- .+ ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 6899999999999999999999 99875 55554432322 22332110 00 0356788
Q ss_pred hhccCCeEEEeccch----------hHHHHHHHHHhcCCCCcEEEEec
Q 007987 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 175 av~~ADIVILaVPd~----------a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+++++|++|+|+|.. ....+++.|.++++++++|++-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 899999999999832 24557778999999999887665
No 142
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.04 E-value=0.00044 Score=72.87 Aligned_cols=206 Identities=13% Similarity=0.065 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcc-----------------cHHHHHHcCceec-------CC--CcC--CHH
Q 007987 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----------------SFAEARAAGFTEE-------NG--TLG--DIY 173 (582)
Q Consensus 122 mG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-----------------s~~~A~~~G~~~~-------d~--t~~--~~~ 173 (582)
||..||..+..+ |++|++.+.+... .++.+.+.|.... +. ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999888 9999888776421 1122223332110 00 011 256
Q ss_pred hhhccCCeEEEeccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhh
Q 007987 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (582)
Q Consensus 174 Eav~~ADIVILaVPd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~ 250 (582)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.+ ..+..-+++.+|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 7899999999999977764 48889999999999874 556677666654 23233479999998887762
Q ss_pred cccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHHHcCCC
Q 007987 251 GKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMN 329 (582)
Q Consensus 251 G~e~~G~Gv~al-iAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lVe~Gl~ 329 (582)
+.+ +..+...+.+.++.+..++..+|...+. ..+.. | +++.....+++..+...+-+.|.+
T Consensus 146 ---------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~----v~d~~----G-fi~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 146 ---------PLVEVSPSDATDPAVVDRLAALLERIGKVPVV----CGPSP----G-YIVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEE----ecCCC----C-cchHHHHHHHHHHHHHHHHhCCCC
Confidence 221 3456688899999999999999975111 11110 1 134444455555555566677789
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHhc
Q 007987 330 EDLAYKNTVECI------TGIISKIISTQGMLAVYNSF 361 (582)
Q Consensus 330 pe~Ay~~~~~ei------~glia~lI~e~Gi~~m~d~v 361 (582)
+++......... .| .-+++-..|+...++..
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~~ 244 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYAS 244 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHHH
Confidence 988776543331 13 34455666665555443
No 143
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.02 E-value=2.4e-05 Score=80.66 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=63.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~Vi-Vg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|||||+|.||..++++|.+.. .++++. +.++...+..+.+.+.|... .+.+.++++.++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156654 34444334444555556421 15688999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 007987 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (582)
+.++..... +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 887776544 4565 4444444
No 144
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=1.7e-05 Score=83.22 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|+|||.| .||..+|.+|.+. |..|.+..+.. .++.+++++||+||.+
T Consensus 156 ~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 156 DLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVAA 209 (301)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5789 999999996 9999999999998 99888775431 2567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++.... ++. ..+++|++|++++
T Consensus 210 vg~~~~---v~~--~~ik~GaiVIDvg 231 (301)
T PRK14194 210 VGRPRL---IDA--DWLKPGAVVIDVG 231 (301)
T ss_pred cCChhc---ccH--hhccCCcEEEEec
Confidence 997643 221 1278999888763
No 145
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.99 E-value=4.1e-05 Score=83.55 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=73.9
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..+.| ++|+|||+|.+|..+++.++.. |.+|++.++. +.....|...|+. ..+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYE-----VMTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCE-----EccHHHHHcCCCEEEEC
Confidence 34789 9999999999999999999988 9888776554 4447888899986 34667889999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (582)
+... .++. +....+++|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 8753 3455 467889999988766543
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.99 E-value=0.0001 Score=76.86 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=93.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceec-CCC--c----CCHHhhhccCCeEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~-~~G~~~~-d~t--~----~~~~Eav~~ADIVI 183 (582)
++|+|||+|.||+-+|-.|.++ |.+|.+..|... ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 6899999999999999999998 888877766432 233333 3355321 111 0 01112235679999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhcccccCCCC-----CcEEEeccCCChhhHHHHHhhcccccC
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKN-----IGVIAVCPKGMGPSVRRLYVQGKEING 256 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-~~~~~~~i~~p~d-----v~VI~v~Pngpg~~vR~ly~~G~e~~G 256 (582)
++||-....++++.+.+++.++++| .+-.|+.. ..+.. .+|.+ +-.+.+....|+.+. ..|
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v~---------~~~ 143 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRVV---------FAG 143 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEEE---------Eec
Confidence 9999998889999999999998865 56678863 23333 34443 122334445666662 113
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 257 ~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.|... +.... ++..+...+++...|..
T Consensus 144 ~g~~~-~G~~~---~~~~~~l~~~l~~ag~~ 170 (305)
T PRK05708 144 HGFTW-LGDPR---NPTAPAWLDDLREAGIP 170 (305)
T ss_pred eEEEE-EcCCC---CcchHHHHHHHHhcCCC
Confidence 33322 44322 23344455677776753
No 147
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=7.1e-05 Score=80.75 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=103.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC----ceecCCCcCCHHhh---hccCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G----~~~~d~t~~~~~Ea---v~~ADIVIL 184 (582)
..||+||+|.||+.+|+|+.+. |+.|.|++|..++..+.-.+.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4699999999999999999999 9999999998887666655554 232 4567765 456678888
Q ss_pred eccchh-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCc
Q 007987 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (582)
Q Consensus 185 aVPd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv 259 (582)
.|+-.. ...++++++|+|.+|.+|++..-.. ++...+ .-.+++.||..==.| |.|.--.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 888753 4568889999999999999876432 222222 234678888532221 11111111
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 260 ~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
|+ |-|.. +.++++.+.-++.+|-+.
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhh
Confidence 33 44454 679999999999999875
No 148
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.95 E-value=5.8e-05 Score=66.67 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=60.9
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeccch
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s-ks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVILaVPd~ 189 (582)
+|||||+|.+|..+...+++. ..+++++...+.+. +....+++.|+.. ..+.+++++ +.|+|++++|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCCc
Confidence 799999999999999998876 12456543444443 3334466788875 788999887 789999999999
Q ss_pred hHHHHHHHHHh
Q 007987 190 AQADNYEKIFS 200 (582)
Q Consensus 190 a~~~Vl~eI~~ 200 (582)
.+.++......
T Consensus 74 ~h~~~~~~~l~ 84 (120)
T PF01408_consen 74 SHAEIAKKALE 84 (120)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99888876544
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.92 E-value=3.3e-05 Score=80.83 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=68.8
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.|.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 678 9999999999999999999986 5 4677777765565677777776420 1234567889999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEec
Q 007987 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~L-k~GaiL~~a~ 212 (582)
|......+++.+.... +++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666554
No 150
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=97.91 E-value=0.00078 Score=68.17 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=134.0
Q ss_pred HHcCceecCCCcCCHHhhhccCCeEEEecc-chhHHHHHHHHHhcCCCCcEEEEecCchhh-h---hhcccccCCCCCcE
Q 007987 158 RAAGFTEENGTLGDIYETISGSDLVLLLIS-DAAQADNYEKIFSCMKPNSILGLSHGFLLG-H---LQSMGLDFPKNIGV 232 (582)
Q Consensus 158 ~~~G~~~~d~t~~~~~Eav~~ADIVILaVP-d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-~---~~~~~i~~p~dv~V 232 (582)
+..|+.+ ..+..|++++||+||.=.| -..|.++++++.+.+++|++|+++.-+... | .+. .-+++.+|
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed---~gredlnv 195 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFED---MGREDLNV 195 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHH---hCccccce
Confidence 4567775 5677899999999999887 456788999999999999999988765422 1 122 23578999
Q ss_pred EEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh-hhhch
Q 007987 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLGA 311 (582)
Q Consensus 233 I~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq-vLsG~ 311 (582)
-.-||-+ .+.+ +|-.+ |+ +..+++++.+..-.+.+---+. .|+ ....|.|-. -.|..
T Consensus 196 tsyhpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-----afk--~pa~llgpvcdmcsa 253 (343)
T COG4074 196 TSYHPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-----AFK--VPAYLLGPVCDMCSA 253 (343)
T ss_pred eccCCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-----ccc--CcHHhhchHHHHHHH
Confidence 9999944 3331 34333 44 6678888887766665433221 111 223355554 45555
Q ss_pred HHHHHHHH---HHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHH
Q 007987 312 VHGIVESL---FRRFT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 386 (582)
Q Consensus 312 ~pAlieAl---~d~lV--e~Gl~pe~Ay~~~~~ei~glia~lI~e~Gi~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e 386 (582)
+.+++-|+ |+-.| -.|-|-+.|...+.+.+.+ |++++.+.|++.|-+.+.. .+-.|.+-|-.+.|+.+++..
T Consensus 254 vtaivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeealdp--aallgtadsmnfgpladilpt 330 (343)
T COG4074 254 VTAIVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALDP--AALLGTADSMNFGPLADILPT 330 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCH--HHhhCccccccccchHHHhHH
Confidence 56553333 22222 2599999999999999875 9999999999999999875 334555444445677777765
Q ss_pred HHH
Q 007987 387 CYE 389 (582)
Q Consensus 387 ~~~ 389 (582)
.++
T Consensus 331 ale 333 (343)
T COG4074 331 ALE 333 (343)
T ss_pred HHH
Confidence 554
No 151
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.88 E-value=5.7e-05 Score=69.60 Aligned_cols=94 Identities=19% Similarity=0.267 Sum_probs=70.2
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC----------cCCHHhhhccCCeEE
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t----------~~~~~Eav~~ADIVI 183 (582)
|+|||.|.||.-+|-.|... |.+|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 79999999999999999988 99887776653 3455566777542111 011123567899999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEE-EEecCch
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~ 215 (582)
++||-.+..++++.+++++.+++.| ++--|+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 9999999999999999999998654 5666875
No 152
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.77 E-value=8.7e-05 Score=66.69 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcC-ceecCCCcCCHHhh-hccCCeEEEeccc
Q 007987 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (582)
Q Consensus 113 kIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg-~r~~sks~~~A~~~G-~~~~d~t~~~~~Ea-v~~ADIVILaVPd 188 (582)
+|+||| .|.+|..++..|.+. .++++... .++.++....+...+ +....-...+..+. ..++|+||+++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 589999999999884 15554333 222221111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999888766778999999999886
No 153
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.73 E-value=6.1e-05 Score=79.00 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=61.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHc---C--ceecCCCcCCHHhhhccCCeEEEe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~---G--~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
++|+|||+|.||..+++.+... .+ .+|.+.+|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~-----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV-----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 8999999999999999877652 03 47888888766555555442 4 332 56788999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEE
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
||.. ..++.. ..+++|++|.
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEE
Confidence 9965 334432 4578898543
No 154
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.65 E-value=5.9e-05 Score=69.67 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC---ceecCCCcCCHHhhhccCCe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G---~~~~d~t~~~~~Eav~~ADI 181 (582)
..++| +++.|||.|-+|++++..|.+. |. +|.+.+|+.++..+.+...+ +.. ....+..+.++++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 46788 9999999999999999999998 87 48888987666666666652 211 114456677899999
Q ss_pred EEEeccchhHHHHHHHHHhcCCCC-cEEEEec
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~G-aiL~~a~ 212 (582)
||.+||-... .+-++..+...+. .++++.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999997655 2222333322222 3677764
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.65 E-value=0.00011 Score=77.44 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=63.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH---HcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~---~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
-+++||||+|.||..+++.|.... ..-+|.|++++.++....+. +.|+.. ..+.+.++++++||+|+.+||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 378999999999999999887640 12367777776554333333 345321 115789999999999999998
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
... .++. ...++||+.|.-.+..
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCC
Confidence 642 3343 2356899987655544
No 156
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00014 Score=76.31 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=59.9
Q ss_pred cccCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|+||| .|.||..+|.+|.+. |..|.++..+. + ++++++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-~------------------~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-R------------------DLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-C------------------CHHHHHhcCCEEEEe
Confidence 4789 9999999 999999999999998 99888764221 1 346788999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
++...+ +++. ++++|++|+++ |++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDv-Gin 232 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDV-GIN 232 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEc-CCc
Confidence 997653 3321 28899988876 443
No 157
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.59 E-value=0.00014 Score=71.75 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.3
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhc-cCCeEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~-~ADIVI 183 (582)
...++| |+|+|+|+|+||.++++.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 356889 9999999999999999999998 9998866554333223333436552 34455553 799998
Q ss_pred Eecc
Q 007987 184 LLIS 187 (582)
Q Consensus 184 LaVP 187 (582)
.+..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6655
No 158
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.0008 Score=68.43 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=127.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~----~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
..++|||.|..|.+..+..-+- ++.. +. -.++|.+.|+. .+.. ..+.+...+-.++||.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c--s~-i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC--SA-ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee--hh-hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5789999999999954433222 3322 11 12344555543 2222 2344444455678888888
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCchhh-hhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee-
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv- 265 (582)
|..+.++.... ..+||++|.+++|++-. .+.. .-+.+.--..+||+.......+--++.+ +.- |.+
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl~-----d~~--~~i~ 144 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRLK-----DTI--FGIT 144 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhCc-----ccE--EEee
Confidence 88665555433 34789999999999732 2211 0112444567999998888766666542 322 333
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh--hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER--ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 343 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq--vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~~ei~g 343 (582)
..| +-...++++++.-+|+.. --+.|.+-.+||.. ..++...++.--..+.+...|.++-++.-+.+--+.|
T Consensus 145 eaD--~~g~ai~q~la~emgg~~----f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g 218 (289)
T COG5495 145 EAD--DVGYAIVQSLALEMGGEP----FCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG 218 (289)
T ss_pred ccc--ccccHHHHHHHHHhCCCc----eeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH
Confidence 333 345577899999999962 12345556699987 5677777777777788889999988777664433333
Q ss_pred HHHHHHHHhcH
Q 007987 344 IISKIISTQGM 354 (582)
Q Consensus 344 lia~lI~e~Gi 354 (582)
..+-+++.|.
T Consensus 219 -~~~n~~qrg~ 228 (289)
T COG5495 219 -ALENTLQRGQ 228 (289)
T ss_pred -HHHHHHHhhh
Confidence 3333333443
No 159
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.55 E-value=0.00014 Score=79.28 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=56.7
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
+.| ++|+|||+|.||..+++.|+.. |. +|++.+|+..+..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 180 ~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISST 250 (423)
T ss_pred ccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEECC
Confidence 678 9999999999999999999987 87 677787765555566777664310 1235667889999999999
Q ss_pred cchh
Q 007987 187 SDAA 190 (582)
Q Consensus 187 Pd~a 190 (582)
+...
T Consensus 251 ~s~~ 254 (423)
T PRK00045 251 GAPH 254 (423)
T ss_pred CCCC
Confidence 8443
No 160
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.52 E-value=0.00047 Score=70.46 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=70.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
++|+|||+ |.||..++..+.+. .+++++...+.+..........|+.. ..++++++++.|+|+.++||..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~~ 72 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPEA 72 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHHH
Confidence 68999998 99999999988764 15666554544332222223334432 4678888888999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCCcEEEeccCC
Q 007987 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG 239 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Png 239 (582)
..++..... +.|. +|+-..|++....+. .....+.++++ ..||.
T Consensus 73 ~~~~~~~al---~~G~~vvigttG~s~~~~~~-l~~aa~~~~v~-~s~n~ 117 (257)
T PRK00048 73 TLENLEFAL---EHGKPLVIGTTGFTEEQLAE-LEEAAKKIPVV-IAPNF 117 (257)
T ss_pred HHHHHHHHH---HcCCCEEEECCCCCHHHHHH-HHHHhcCCCEE-EECcc
Confidence 877666543 3455 333355777543322 11122445544 45544
No 161
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00034 Score=73.05 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=59.1
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|+|||. |.||..+|..|.+. |..|.+. + ++ ..++++.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~-~--s~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLT-H--SR----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEE-C--CC----------------CCCHHHHHhhCCEEEEe
Confidence 4789 99999999 99999999999998 9888775 2 11 12567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++.... ++. .++++|++|++++
T Consensus 209 vg~~~~---v~~--~~ik~GavVIDvg 230 (284)
T PRK14179 209 IGRGHF---VTK--EFVKEGAVVIDVG 230 (284)
T ss_pred cCcccc---CCH--HHccCCcEEEEec
Confidence 997654 221 2388999988763
No 162
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.40 E-value=0.00093 Score=68.64 Aligned_cols=91 Identities=22% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceecCCCcCCHHhhhccCCeEEEeccc
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~--~G~~~~d~t~~~~~Eav~~ADIVILaVPd 188 (582)
|++|||||+|.||..+++.|.+. .++++...........+.... .+... +.+++++..+.|+|+.++|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47899999999999999999865 134433332222111111111 24443 56777764568999999999
Q ss_pred hhHHHHHHHHHhcCCCCc-EEEEecC
Q 007987 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (582)
..+.++...+. +.|+ +++.+.|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 88866666543 4555 3444444
No 163
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.37 E-value=0.00053 Score=62.64 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=66.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cH--HHHH-----HcCceecCCCcCCHHhhhccCCeE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF--AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-s~--~~A~-----~~G~~~~d~t~~~~~Eav~~ADIV 182 (582)
++|+|+|+ |.||+.+++.+.+. .++++..+.++... .. +... ..|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 48999999 99999999999984 17776555544321 00 1111 234443 46789999999999
Q ss_pred EEeccchhHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCCcEEEeccC
Q 007987 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238 (582)
Q Consensus 183 ILaVPd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pn 238 (582)
|-.+-|+...+.++....+ |. +|+=..|++-..++. ...+.+.++++ ..||
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~-l~~~a~~~~vl-~a~N 123 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQIDE-LEELAKKIPVL-IAPN 123 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHHH-HHHHTTTSEEE-E-SS
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHHHH-HHHHhccCCEE-EeCC
Confidence 9999877777777654443 44 456678987332211 01123445555 5565
No 164
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.36 E-value=0.00032 Score=76.52 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=56.9
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.+...|... -...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~--i~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEA--VKFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeE--eeHHHHHHHHhhCCEEEEC
Confidence 4778 9999999999999999999988 8 478787776555555666666431 0123566788999999999
Q ss_pred ccchh
Q 007987 186 ISDAA 190 (582)
Q Consensus 186 VPd~a 190 (582)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
No 165
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.35 E-value=0.00049 Score=72.09 Aligned_cols=90 Identities=21% Similarity=0.172 Sum_probs=65.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc---CceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~---G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
++|+|||+|.||..++..+... .++ +|.+.+|...+..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 8999999999999999999753 144 6777777655555555443 33320 3578899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
... .++.. .++||+.|.-....
T Consensus 198 s~~--Pl~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 198 SRT--PVYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred CCC--ceeCc---cCCCCCEEEecCCC
Confidence 664 34542 47899877765544
No 166
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.31 E-value=0.0017 Score=67.35 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=43.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--cCceec--CCC---cCCHHhhhccCCeE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NGT---LGDIYETISGSDLV 182 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~--~G~~~~--d~t---~~~~~Eav~~ADIV 182 (582)
|+||+|||.|+||..+|..+... |+ ++++.+...++....+.+ ...... +.. ..+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999998876 54 777776644332222211 111000 000 2344 568999999
Q ss_pred EEec
Q 007987 183 LLLI 186 (582)
Q Consensus 183 ILaV 186 (582)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 167
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00069 Score=72.16 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH---HcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~---~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+...++|||+|.|+..|.+.++.- +++ +|.|+.|+.....+.+. +.+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 244 67777777554444442 333210 12367889999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
||... .++. ...|+||+.|.-+.+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 4444 3467899988766654
No 168
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.27 E-value=0.00058 Score=71.60 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=64.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHHhhhccCCeEEEe
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~----~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
-++++|||+|.||..+++.+..- ..+ +|.|+.|..++..+.+.+ .|+.. ..+.+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38899999999999999998874 144 677777765554444333 24321 1157899999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+-.. .+++ ...++||+.|.-...+
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCC
Confidence 99543 4443 2356888877655544
No 169
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.0007 Score=71.38 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=63.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~----~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++|+|||+|.||.+++..+... .++ +|.+.+|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8899999999999999887643 154 566777765554444432 24421 11567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|-. ..++. ..+++|+.|.-...+
T Consensus 201 ~s~--~p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 201 NAK--TPVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCC--CcchH---HhcCCCcEEEecCCC
Confidence 965 23443 567999988766554
No 170
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.0006 Score=72.99 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHHhhhccCCeEEEe
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~---~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+-++++|||+|.||..+++.+..- ..+ +|.|+.|...+..+.+.+ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v-----r~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL-----LGIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh-----CCceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 337899999999999999988764 134 677777765543333322 24321 1157899999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
|+......+++. ..++||+.|.-...+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCCC
Confidence 975432344541 3568998776555443
No 171
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.24 E-value=0.0011 Score=67.31 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=102.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceecC-------------
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------------- 166 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-----------~G~~~~d------------- 166 (582)
++.|+|||.|.||..+|+-...+ |++|++.+++.. ...+|.+ .+... +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~~-aL~~A~~~I~~sl~rvakKk~~~-~~~~~~e~v~~~l~ 82 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANED-ALSRATKAISSSLKRVAKKKKAD-DPVALEEFVDDTLD 82 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCHH-HHHHHHHHHHHHHHHHHhhcccC-ChhhHHHHHHHHHH
Confidence 48899999999999999999888 999887765532 2333322 11110 0
Q ss_pred --CCcCCHHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCCcEEEeccCCCh
Q 007987 167 --GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (582)
Q Consensus 167 --~t~~~~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg 241 (582)
.+..+..+++++||+||=++-...- .+++++|-..-++.+++. -.+.+.+..+.. .....-.|...|=--|.
T Consensus 83 ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPv 159 (298)
T KOG2304|consen 83 RIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPV 159 (298)
T ss_pred HHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCc
Confidence 1134567888889998876653322 346666666667787764 667777776644 23344567788877777
Q ss_pred hhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 242 ~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
+++. +-+ +.-+.+.+++-......+.+++|.+
T Consensus 160 PvMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 160 PVMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hhHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 7742 222 2336788999999999999999974
No 172
>PLN00203 glutamyl-tRNA reductase
Probab=97.24 E-value=0.0011 Score=74.63 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~-G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+.+ ++|+|||.|.||..++.+|... |. +|++.+|+..+....+.+. |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999988 86 6888888766655555554 2211000134567889999999999
Q ss_pred ccch---hHHHHHHHHH
Q 007987 186 ISDA---AQADNYEKIF 199 (582)
Q Consensus 186 VPd~---a~~~Vl~eI~ 199 (582)
|+-. ...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 8632 2244555443
No 173
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.23 E-value=0.0011 Score=71.22 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC--cCCHHhhhccCCeEEEe
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--LGDIYETISGSDLVLLL 185 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t--~~~~~Eav~~ADIVILa 185 (582)
+.+ .+|.|||+|.+|...++.++.. |.+|++.+++..+....+...|....... ..++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 88887777654332233333443210000 12356778999999999
Q ss_pred ccc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 007987 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd--~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (582)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2223333 45666789999888765
No 174
>PRK06046 alanine dehydrogenase; Validated
Probab=97.17 E-value=0.00089 Score=70.69 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~----~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++|+|||+|.||..++.++... .++ .+.+.++...+..+.+.+ .|+.. ..+.+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 155 455555554333333332 24321 01457888887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|... .++. ...+++|+.|.-.+..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3443 2356899887655544
No 175
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.17 E-value=0.0032 Score=64.86 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=62.5
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEec-CCccc--HHHHHH-----cCceecCCCcCCHHhhhccCCe
Q 007987 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 111 ikkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r-~~sks--~~~A~~-----~G~~~~d~t~~~~~Eav~~ADI 181 (582)
|.+|+||| +|.||..+++.+.+. .+++++...+ .++.. .+.+.. .|+.. ..+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999999864 1677655544 32221 122222 23432 4577777557899
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCc-EEEEecCchhhh
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ 218 (582)
||.++||....+++..... .|. +|+-..|++...
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~ 106 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEED 106 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHH
Confidence 9999999888777765443 444 444445886443
No 176
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.16 E-value=0.00084 Score=70.89 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=62.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~----G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++++|||+|.||..++..|... .++ +|.|..|+..+..+.+.+. |+.. ..+.+.++++++||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 155 6778887766555554432 5432 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
|... .++. ...+++|+.|...
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEee
Confidence 9643 3443 1346889876643
No 177
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.15 E-value=0.0011 Score=70.35 Aligned_cols=86 Identities=9% Similarity=0.133 Sum_probs=55.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
.+|+|||+|+||..++..+.+. .+++++...+.+.. .......+... ..+.+++..+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~-~~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGA-ETLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcH-HHHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 16776443343321 11222234332 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q 007987 192 ADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~ 210 (582)
.+.. .+.|+.|.-+++
T Consensus 74 ~~~~---~~~L~aG~NVV~ 89 (324)
T TIGR01921 74 IPEQ---APYFAQFANTVD 89 (324)
T ss_pred HHHH---HHHHHcCCCEEE
Confidence 4443 344555654443
No 178
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.13 E-value=0.0012 Score=59.75 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.3
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEE-EecCC--cccHHHHHH--cCceecCCCcC-CHHhhhccCCeEEEe
Q 007987 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (582)
Q Consensus 113 kIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViV-g~r~~--sks~~~A~~--~G~~~~d~t~~-~~~Eav~~ADIVILa 185 (582)
||+||| .|.+|..+.+.|.+. ..++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1344333 23332 233333211 01110 0011 123456899999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888776 4578888888775
No 179
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.13 E-value=0.00098 Score=71.47 Aligned_cols=94 Identities=24% Similarity=0.257 Sum_probs=76.3
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
-.+.| |++.|.|||-.|...|+.||.. |.+|+|..-.+-+ .-+|.-+||. +..++|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 34678 9999999999999999999977 9899887655444 4566778999 57899999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 007987 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 186 VPd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (582)
|-.... +. +.+..||+|++|.-+.-|+
T Consensus 272 TGnkdV---i~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKDV---IRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcCc---cCHHHHHhccCCeEEecccccc
Confidence 987543 43 5667799999988766565
No 180
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.07 E-value=0.0037 Score=66.73 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceec-----------CC---CcCCHHhh
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~-~~A~~~G~~~~-----------d~---t~~~~~Ea 175 (582)
|.||||+|+|.||+.+++.+.+. .+++++...+...... ..++..|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998864 1567655554332211 22333343200 00 02356777
Q ss_pred hccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 176 v~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999998887766643 4457778888874
No 181
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.07 E-value=0.0012 Score=69.72 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHH---HHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A---~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+-++++|||+|.||..+++.+..- ..+ +|.|+.|..++..+.+ ++.|+.. ..+.+.++++++||+|+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEe
Confidence 338999999999999999998764 133 6778777755544333 2235432 1146789999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+-.. .+++ ...++||+.|.-.+.+
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCC
Confidence 98543 4553 2357899887655544
No 182
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.06 E-value=0.0009 Score=73.24 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G-~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.++| ++|.|||.|-||.+++.+|.+. |. ++++.+|+..+....+.+.| ... ....+..+.+.++|+||.
T Consensus 178 ~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIIIA 248 (414)
T ss_pred CccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEEE
Confidence 4678 9999999999999999999988 86 68888887666667777654 221 012345678899999999
Q ss_pred eccch
Q 007987 185 LISDA 189 (582)
Q Consensus 185 aVPd~ 189 (582)
||+-.
T Consensus 249 aT~a~ 253 (414)
T PRK13940 249 AVNVL 253 (414)
T ss_pred CcCCC
Confidence 99843
No 183
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.06 E-value=0.00054 Score=72.01 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=53.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~---~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
++++|||+|.||..++..+..- +++ +|.|+.|+..+..+.+.+ .|+.+ ..+.+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV-----RPIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH-----S--SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHh-----CCceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 7899999999999999999875 144 677777764433332222 24432 125789999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
-..-..+++ ...+++|+.|.-....
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 665213343 2467889877655544
No 184
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.05 E-value=0.0012 Score=64.02 Aligned_cols=97 Identities=21% Similarity=0.147 Sum_probs=61.6
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcC---CHHhhhcc
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETISG 178 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~----G~~~~d~t~~---~~~Eav~~ 178 (582)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+..+..+.+... +......... +..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 4678 99999996 99999999999988 888877777544333333222 2110000012 23477889
Q ss_pred CCeEEEeccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 179 ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|+||.++|.... .........+++.++++..
T Consensus 98 ~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence 9999999997775 1112222345566777653
No 185
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.04 E-value=0.023 Score=57.55 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--C--------CcCCHHhhhccCCeEEEeccchh
Q 007987 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 121 smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d--~--------t~~~~~Eav~~ADIVILaVPd~a 190 (582)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999988 8888777664 334445556754311 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCch
Q 007987 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (582)
..++++.+.+++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999999887654 556774
No 186
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.00 E-value=0.0023 Score=66.25 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=61.4
Q ss_pred CEEEEEccchhH-HHHHHHHHHhhhhhcCC--ceE-EEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEe
Q 007987 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~GsmG-~AiA~nLrds~~~~g~G--~~V-iVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILa 185 (582)
.+|||||+|.++ ..++..+++. + +.+ .+.+++.++..+.+.+.|+.. ...+.+++++. .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999655 5688888876 4 333 333455556667788888741 26789998876 5999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEE
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
+|+..+.++.. ..|+.|+-|.
T Consensus 75 tp~~~H~e~~~---~AL~aGkhVl 95 (342)
T COG0673 75 TPNALHAELAL---AALEAGKHVL 95 (342)
T ss_pred CCChhhHHHHH---HHHhcCCEEE
Confidence 99999988774 3455676544
No 187
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.00 E-value=0.045 Score=58.71 Aligned_cols=212 Identities=13% Similarity=0.155 Sum_probs=116.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhh-cCCceEEEEecC---CcccHHHHHH-----------cC------ceecCCCcC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRK---GSRSFAEARA-----------AG------FTEENGTLG 170 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~-g~G~~ViVg~r~---~sks~~~A~~-----------~G------~~~~d~t~~ 170 (582)
++|+|||.|+=|.++|+.+..+-.+. -+..+|..+.+. +.+.....+- -| +.. +.
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA----v~ 97 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA----VP 97 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe----cc
Confidence 78999999999999999988761111 111233333222 1110111110 01 121 56
Q ss_pred CHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcc-cccCC---------CCCcEEEeccCC
Q 007987 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSM-GLDFP---------KNIGVIAVCPKG 239 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~~~~~-~i~~p---------~dv~VI~v~Png 239 (582)
|+.+++++||+++..+|.+-...++++|..+++++.. |+.+.||... +.+ ++.++ -.+. +..=||-
T Consensus 98 dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~--~~g~~i~liS~iI~~~lgI~~~-vL~GaNi 174 (372)
T KOG2711|consen 98 DLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVG--EEGPGIRLISQIIHRALGIPCS-VLMGANI 174 (372)
T ss_pred hHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceecc--CCCCceeehHHHHHHHhCCCce-eecCCch
Confidence 7899999999999999999999999999999999986 7788888643 110 01111 1222 3334555
Q ss_pred ChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHH--HH
Q 007987 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGI--VE 317 (582)
Q Consensus 240 pg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAl--ie 317 (582)
...+-.+.|-++ -|+... ..+.-.+..++|. . ..|.--+-.|+.+- -|||.+--+ +-
T Consensus 175 A~EVa~~~f~e~----------tIg~~~--~~~~~~~l~~lf~---~-----p~FrV~~~~D~~~V-Ei~GaLKNVvAia 233 (372)
T KOG2711|consen 175 ASEVANEKFCET----------TIGYKD--KKEAGILLKKLFR---T-----PYFRVVVVEDADGV-EICGALKNVVAIA 233 (372)
T ss_pred HHHHHhccccce----------eEeccc--hhhcchHHHHHhC---C-----CceEEEEeccchHh-HHhhhHHhHHHHh
Confidence 444444444432 122221 1111112233332 2 23444455565553 288888775 55
Q ss_pred HHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHh
Q 007987 318 SLFRRFTENGMNEDLAY-KNTVECITGIISKIISTQ 352 (582)
Q Consensus 318 Al~d~lVe~Gl~pe~Ay-~~~~~ei~glia~lI~e~ 352 (582)
|+|=.+...|-.-..|. +..+-|+.. .+++++-+
T Consensus 234 aGfvdGL~~g~NTkaAi~r~Gl~Em~~-F~~~f~p~ 268 (372)
T KOG2711|consen 234 AGFVDGLGLGNNTKAAIIRLGLLEMIK-FATHFYPG 268 (372)
T ss_pred hhhhhhccCCcchHHHHHHhhHHHHHH-HHHHhCCC
Confidence 66655566665555443 344444443 44444444
No 188
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.99 E-value=0.0056 Score=64.12 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=62.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk--s~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVILaVP 187 (582)
.+|||||+|++|.-++..+... .++++....+.+.. .++.|++.|+.. +..+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 14554433332232 346788888753 1346777775 5788999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecC
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (582)
+..+.+...... +.|+.|++-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999988776543 45776665443
No 189
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.99 E-value=0.0047 Score=64.85 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=43.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-----Cceec-CC---CcCCHHhhhccCCe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFTEE-NG---TLGDIYETISGSDL 181 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~-----G~~~~-d~---t~~~~~Eav~~ADI 181 (582)
+||+|||.|.||..+|..|... |+ +|++.+.... ...++.. +.... .. ...+.++ +++||+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~--l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDi 72 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEG--IPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDI 72 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCC--hhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCE
Confidence 6899999999999999999887 65 7766655432 2222211 10000 00 0245665 789999
Q ss_pred EEEecc
Q 007987 182 VLLLIS 187 (582)
Q Consensus 182 VILaVP 187 (582)
||++.+
T Consensus 73 VIitag 78 (305)
T TIGR01763 73 VVITAG 78 (305)
T ss_pred EEEcCC
Confidence 999987
No 190
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.99 E-value=0.0019 Score=62.50 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=56.7
Q ss_pred ccccCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~Gsm-G~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
..|+| ++|.|||.|-| |..+++.|... |.+|.+..|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45788 99999999997 88899999988 88877766531 245678999999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|+-.. ++.. ..++++.+|++.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2331 1356677777554
No 191
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.97 E-value=0.0038 Score=65.90 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=65.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHHhhhc-----cCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s--ks~~~A~~~G~~~~d~t~~~~~Eav~-----~ADIVIL 184 (582)
.+|||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. +..+.+++++ +.|+||.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5799999999999988888764 1455543333322 3346688888763 1356788774 5899999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
++|...+.+...... +.|+.|++....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999999988777654 468877766544
No 192
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0021 Score=69.87 Aligned_cols=151 Identities=20% Similarity=0.286 Sum_probs=93.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-------------------cHHHHHHcC-ceecCCCcCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------------------SFAEARAAG-FTEENGTLGD 171 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-------------------s~~~A~~~G-~~~~d~t~~~ 171 (582)
.+|+|||+|-+|..+|..+.++ |++| +|.+-+++ ..+.+.+.| +.. ..+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7899999999999999999998 9887 45544331 133456666 332 345
Q ss_pred HHhhhccCCeEEEeccchhH----------HHHHHHHHhcCCCCcEEEEec----Cch---hhh-hhc-ccccCCCCCcE
Q 007987 172 IYETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLSH----GFL---LGH-LQS-MGLDFPKNIGV 232 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~----------~~Vl~eI~~~Lk~GaiL~~a~----G~~---i~~-~~~-~~i~~p~dv~V 232 (582)
.++ ++.||++++|||...- ....+.|++.|++|++|++=+ |.+ +.. ++. .++.++.|..+
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 554 4589999999984311 223346999999999876443 443 112 222 45666655433
Q ss_pred EEecc--CCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 007987 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (582)
Q Consensus 233 I~v~P--ngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~ 287 (582)
.-+| -.||...+++-. .+-+|. .++++..+++.++-+.+=..
T Consensus 158 -aysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~ 201 (436)
T COG0677 158 -AYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEG 201 (436)
T ss_pred -eeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEE
Confidence 3344 345666444432 333333 45778888887777766544
No 193
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.92 E-value=0.0015 Score=71.39 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=61.2
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-.+..+.|.+.|... -...+..+.+.++|+||.+
T Consensus 175 ~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISS 245 (414)
T ss_pred cccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEe
Confidence 3788 9999999999999999999998 85 78899998888889999999552 1244567789999999999
Q ss_pred cc
Q 007987 186 IS 187 (582)
Q Consensus 186 VP 187 (582)
|.
T Consensus 246 Ts 247 (414)
T COG0373 246 TS 247 (414)
T ss_pred cC
Confidence 86
No 194
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.91 E-value=0.0047 Score=62.85 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=62.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceE-EEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~V-iVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
.+|+|||||.+|..+..-+++- ..+++. .+.++..++....+...+.. .+.+++|.+++.|+|+=|.++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 013444 44444433333333333333 35789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007987 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (582)
..+...++.. .|. +|+.+-|.
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9888877654 443 55666554
No 195
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.89 E-value=0.0014 Score=67.14 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=59.9
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHHh-hhccCCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~---G~~~~d~t~~~~~E-av~~ADIVI 183 (582)
.++ +++.|||.|.+|.+++..|.+. |.+|.+.+|+..+..+.+... |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999988 888888877655444444432 2211 223333 345799999
Q ss_pred EeccchhHHHHHH-HH-HhcCCCCcEEEEe
Q 007987 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (582)
Q Consensus 184 LaVPd~a~~~Vl~-eI-~~~Lk~GaiL~~a 211 (582)
.++|......+-+ .+ ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754322100 01 2345677776655
No 196
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.86 E-value=0.0052 Score=61.95 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=63.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCC----ccc-------HHHHHHcCceecCCCcCC
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~---~ViVg~r~~----sks-------~~~A~~~G~~~~d~t~~~ 171 (582)
..+++ ++|.|+|.|.+|.+++..|.+. |+ ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35778 9999999999999999999987 86 477778762 222 23344432111 0136
Q ss_pred HHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+.++++++|+||-++|+.... +++...|.++.+|.+.
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~l 127 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFAL 127 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEe
Confidence 778889999999999865543 2344455566666543
No 197
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.86 E-value=0.0014 Score=67.52 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=54.6
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCc-CCHHhhhccCCeEEE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~-~~~~Eav~~ADIVIL 184 (582)
.+++ +++.|||.|.+|.+++..|.+. | .+|++.+|+..+..+.+.+.+-.. .-.+ .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 9999999999999999999988 8 478888887555444444433110 0001 133466788999999
Q ss_pred eccchhH
Q 007987 185 LISDAAQ 191 (582)
Q Consensus 185 aVPd~a~ 191 (582)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 198
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.81 E-value=0.0055 Score=65.30 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceec-CCCcCCHH-hhhccCCeEEEec
Q 007987 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (582)
Q Consensus 111 ikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G-~~~~-d~t~~~~~-Eav~~ADIVILaV 186 (582)
|++|+|||+ |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...+.|+||+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 478999997 99999999998865 14555443333222112222222 1100 00122222 2457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+..+.++..++.. .|+.|++.++-
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcc
Confidence 99998888877643 58878877653
No 199
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.79 E-value=0.0021 Score=69.53 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=61.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-----C---ceecCCCcCCHHhhhccC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----G---FTEENGTLGDIYETISGS 179 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~-----G---~~~~d~t~~~~~Eav~~A 179 (582)
++-++++|||+|.||..+.+.+..-. ..+ +|.|+.|...+..+.+.+. | +.+ +.+.++++++|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~A 224 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGS 224 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCC
Confidence 34479999999999999999987641 024 6777777655444333322 3 222 57899999999
Q ss_pred CeEEEeccchh----HHHHHHHHHhcCCCCcEEE
Q 007987 180 DLVLLLISDAA----QADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 180 DIVILaVPd~a----~~~Vl~eI~~~Lk~GaiL~ 209 (582)
|+|+.+|+-.. ...+++ ...++||+.|.
T Consensus 225 DIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 225 DIVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred CEEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 99999997432 123443 23568898765
No 200
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.74 E-value=0.0074 Score=54.76 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.6
Q ss_pred CEEEEEc----cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc
Q 007987 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG----~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP 187 (582)
|+|+||| -+..|.-+..+|++. |++|+--+.+. . .-.|... +.++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~-~-----~i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKG-G-----EILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTC-S-----EETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCc-e-----EECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 98875443332 1 1145553 6678874478999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
++...++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987653 344455555543
No 201
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.73 E-value=0.0053 Score=64.85 Aligned_cols=137 Identities=22% Similarity=0.209 Sum_probs=95.3
Q ss_pred hhhhccccCccccccccchhhhhhhccccccceeeeccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcC
Q 007987 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (582)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~ 139 (582)
|.+.-.+.-|. .+-|-++-+.|--+|-|-.|.++-+ .-...--.+.| |...|.|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dg---ikraTDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDG---IKRATDVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhh---hhhhhhheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 33333333333 4566666666666666666655432 00112344678 9999999999999999999987
Q ss_pred CceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 140 G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
|..|+|..-.+-. .-+|.-.|+. +.+++|+++++|+++.+|--..+ +..+.+..||.++||.-..-|.
T Consensus 237 g~~VivTEiDPI~-ALQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPIC-ALQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchH-HHHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 8888776544333 3445567998 68999999999999999986555 4557788899999998665554
No 202
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.73 E-value=0.008 Score=62.81 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=46.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc-------Cc--eecCCCcCCHHhhhccCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~-------G~--~~~d~t~~~~~Eav~~AD 180 (582)
+||+|||+|.+|.++|..|... |+ ++++.++...+....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999887 74 6777776554433333321 11 11 12344 4578999
Q ss_pred eEEEeccc
Q 007987 181 LVLLLISD 188 (582)
Q Consensus 181 IVILaVPd 188 (582)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999875
No 203
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.71 E-value=0.015 Score=51.24 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=61.5
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHh----hhccCCeEEEeccch
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~E----av~~ADIVILaVPd~ 189 (582)
|.|+|+|.+|..+++.|++. +.++++.. .+....+.+++.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 67999999999999999998 77776554 44555788888887543333344322 357899999999988
Q ss_pred hHHHHHH-HHHhcCCCCcEEEEecCc
Q 007987 190 AQADNYE-KIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 190 a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (582)
...-.+- .+....+...++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6644333 333333334456555543
No 204
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.65 E-value=0.011 Score=62.47 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=44.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--c-----C--ceecCCCcCCHHhhhcc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----G--FTEENGTLGDIYETISG 178 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~--~-----G--~~~~d~t~~~~~Eav~~ 178 (582)
+. +||+|||.|++|.+++..+... |+ ++++.+.+.......+.+ . + ... ....+.+ ++++
T Consensus 4 ~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~~ 73 (319)
T PTZ00117 4 KR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIKD 73 (319)
T ss_pred CC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhCC
Confidence 45 8999999999999999998877 63 665555543322222211 1 1 111 0023555 7799
Q ss_pred CCeEEEec
Q 007987 179 SDLVLLLI 186 (582)
Q Consensus 179 ADIVILaV 186 (582)
||+||++.
T Consensus 74 ADiVVita 81 (319)
T PTZ00117 74 SDVVVITA 81 (319)
T ss_pred CCEEEECC
Confidence 99999998
No 205
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.62 E-value=0.0042 Score=64.57 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-----ceecCCCcCCHHhhhccCC
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G-----~~~~d~t~~~~~Eav~~AD 180 (582)
.+++ ++|.|||+|.+|.+++..|.+. |+ +|.+.+|...+..+.+...+ ... ....+..+.++++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 3567 8999999999999999999988 87 78888887666555555432 110 00223455678899
Q ss_pred eEEEeccchh
Q 007987 181 LVLLLISDAA 190 (582)
Q Consensus 181 IVILaVPd~a 190 (582)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999653
No 206
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.61 E-value=0.0042 Score=69.13 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=51.8
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+... ....+.. .+.++|+||+++
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEcC
Confidence 4577 8999999999999999999998 8888877776444334444433221 0011222 256899999999
Q ss_pred cchh
Q 007987 187 SDAA 190 (582)
Q Consensus 187 Pd~a 190 (582)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 207
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.59 E-value=0.043 Score=56.20 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=122.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceec----------CCCcCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s----------ks~~~A~~~G~~~~----------d~t~~~ 171 (582)
.||+|+|-|.+|+++|.-+..+ |++|..++-..+ +...+.++.|.... -+.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 999877765432 22233334443210 022567
Q ss_pred HHhhhccCCeEEEeccchhH--HHHHHHHHhcCCCCcEEEEecC-chhhhhhcccccCCCCCcEEEeccCCChhhHHHHH
Q 007987 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (582)
Q Consensus 172 ~~Eav~~ADIVILaVPd~a~--~~Vl~eI~~~Lk~GaiL~~a~G-~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly 248 (582)
+.|++++|=.|-=|+|..-. ..+|..+-..+.|.+|+.-+.. |.-..+-. + +...-.++-+||--|---+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCccc----
Confidence 89999998888889996655 3466666666667766653322 22111111 1 1234567889995554431
Q ss_pred hhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccccccccc-ccchhhh-hhhchHHHHHH------HHH
Q 007987 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR-SDIFGER-ILLGAVHGIVE------SLF 320 (582)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~~iettf~~E~~-sDlfgEq-vLsG~~pAlie------Al~ 320 (582)
- ..- +.|++-.+++..+...++...+|-.. .+.+.|.. ..+=-.| ++|+=.-.++. .-.
T Consensus 151 -P--------LvE-lVPaPwTsp~tVdrt~~lM~sigq~p---V~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 -P--------LVE-LVPAPWTSPDTVDRTRALMRSIGQEP---VTLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred -c--------hhe-eccCCCCChhHHHHHHHHHHHhCCCC---cccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 0 111 56677889999999999999999642 12222111 1111122 22222222222 234
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 007987 321 RRFTENGMNEDLAYKNTVECI 341 (582)
Q Consensus 321 d~lVe~Gl~pe~Ay~~~~~ei 341 (582)
|.-..+|+-|-+|+.-.++++
T Consensus 218 D~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred HHHHhcCCCcchhcccchhhh
Confidence 666788999999998777764
No 208
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.58 E-value=0.0041 Score=65.78 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=60.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHHhhhccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~----G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++|+|||+|.||.+++..+... .++ +|.+..|+.++..+.+.+. |+.. ....+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 7999999999999999999863 144 6777777655544444432 4431 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
|-.. .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 34432 23678876643
No 209
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0058 Score=64.07 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=58.8
Q ss_pred cccCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~Gs-mG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.|+| ++|.|||.|. +|..+|..|... |..|++..++. .++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEEC
Confidence 5899 9999999988 999999999988 88887775421 2456789999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++-... +.. ..+++|++|++++
T Consensus 209 vg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 209 VGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCcc---cCH--HHcCCCcEEEEcC
Confidence 986432 321 3478898888765
No 210
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.012 Score=59.36 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=57.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCceecCCCcCC---HHhh-hccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-A~~~G~~~~d~t~~~---~~Ea-v~~ADIVILaV 186 (582)
|+|.|||+|..|..+|+.|.+. |++|++-++...+..+. +.+.+.....+...+ +.++ +.++|+++.+|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 99887766654443331 222443321111222 4455 78899999999
Q ss_pred cchhHHHHHHHHH
Q 007987 187 SDAAQADNYEKIF 199 (582)
Q Consensus 187 Pd~a~~~Vl~eI~ 199 (582)
..+.+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
No 211
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.55 E-value=0.012 Score=63.83 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=59.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCceecCCCcCC---HHhh-hccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-~G~~~~d~t~~~---~~Ea-v~~ADIVILaV 186 (582)
|+|.|||+|.+|.++++.|++. |+++++..++.. ..+.+.+ .|+....+...+ .+++ ++++|.||+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~-~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEE-RLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5799999999999999999998 888876655433 3444443 454321111222 3445 78899999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEe
Q 007987 187 SDAAQADNYEKIFSCM-KPNSILGLS 211 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~L-k~GaiL~~a 211 (582)
++......+......+ +...+|..+
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9877655444433333 333444433
No 212
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.003 Score=67.72 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=69.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-H-cCceecCCCcCCHHhhh---ccCCeEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~-~-~G~~~~d~t~~~~~Eav---~~ADIVILaV 186 (582)
..||.||++.||+.+++|+.+. |+.|.+++|..++.-+... + .|-.+ -...+++|.+ +.--.|+|++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i--~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKI--IGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcc--cCCCCHHHHHHhcCCCcEEEEEe
Confidence 4599999999999999999999 9999999998765432221 1 23221 0145777765 5578999999
Q ss_pred cchhHHH-HHHHHHhcCCCCcEEEEec
Q 007987 187 SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 187 Pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+-....+ .++++.|+|.+|.+|++-.
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 9777665 6678999999999988754
No 213
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.52 E-value=0.0054 Score=53.52 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaVPd~ 189 (582)
.+++|+|+|+.|.+++..+.+. . |+.+....+.+++.... .-.|+.+ ..+++++.+. .|+.+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 44333333322221111 1136654 3477777766 99999999999
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEec
Q 007987 190 AQADNYEKIFS-CMKPNSILGLSH 212 (582)
Q Consensus 190 a~~~Vl~eI~~-~Lk~GaiL~~a~ 212 (582)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 88888877544 3322 555654
No 214
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.51 E-value=0.013 Score=62.03 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=44.0
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCccc----HHHHHHc---C--ceecCCCcCCHHhhhc
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARAA---G--FTEENGTLGDIYETIS 177 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks----~~~A~~~---G--~~~~d~t~~~~~Eav~ 177 (582)
++. +||+|||.|+||.++|..+... |+ ++++.+...... .+..... + .... ...+. ++++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhC
Confidence 445 8999999999999999998877 75 655555443321 2222111 1 1110 12355 5789
Q ss_pred cCCeEEEec
Q 007987 178 GSDLVLLLI 186 (582)
Q Consensus 178 ~ADIVILaV 186 (582)
+||+||++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
No 215
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.48 E-value=0.012 Score=50.13 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.8
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
..+++ ++++|+|+|.||..++..|.+. +. ++.+.++ |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34778 9999999999999999999987 43 4544433 99999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998754422 2334456788877654
No 216
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.0061 Score=63.88 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=58.3
Q ss_pred cccCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~Gsm-G~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+++|||.|.. |..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 4789 99999999988 99999999988 8887664221 23567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++-.. ++. ..++|+|++|++++
T Consensus 209 vG~~~---~i~--~~~ik~gavVIDVG 230 (285)
T PRK14189 209 VGKRN---VLT--ADMVKPGATVIDVG 230 (285)
T ss_pred CCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99433 343 26789999887764
No 217
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0081 Score=65.42 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=57.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcC---c--eecCCC-cCCHHhhhccCCeEE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENGT-LGDIYETISGSDLVL 183 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G---~--~~~d~t-~~~~~Eav~~ADIVI 183 (582)
|++|.|||+|.+|++.|..|.++ | .+|.+.+|+..+ .+++...+ + ...|-. .....+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 58999999999999999999888 6 789998887544 33443332 1 110110 123567899999999
Q ss_pred EeccchhHHHHHH
Q 007987 184 LLISDAAQADNYE 196 (582)
Q Consensus 184 LaVPd~a~~~Vl~ 196 (582)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999988877775
No 218
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.43 E-value=0.014 Score=57.80 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=57.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G-~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-.++| ++|.|||.|.+|...++.|.+. |.+|+|..+.-.+........| +..... ... .+.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~~-~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EFE-PSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CCC-hhhcCCceEEEE
Confidence 35889 9999999999999999999998 8887776554333222322333 221011 111 234678999999
Q ss_pred eccchhHHHHHHHHH
Q 007987 185 LISDAAQADNYEKIF 199 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~ 199 (582)
+|.+...-..+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988766554443
No 219
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.42 E-value=0.015 Score=61.02 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--Cceec---CCCcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~--G~~~~---d~t~~~~~Eav~~ADIVIL 184 (582)
+||+|||.|.+|.++|..|... |+ ++++.+++..+....+... ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 4799999999999999999988 74 6666665433222222211 11000 0001344 56899999999
Q ss_pred eccc
Q 007987 185 LISD 188 (582)
Q Consensus 185 aVPd 188 (582)
+++.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9875
No 220
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.012 Score=63.99 Aligned_cols=92 Identities=16% Similarity=0.179 Sum_probs=61.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--------------CC---CcCCHHh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--------------d~---t~~~~~E 174 (582)
|||+|||.|=.|...+..|.+. |++|+.. +.++...+ ....|..+= .+ ...+.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~-~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVE-LLNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHH-HHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899999999999999999998 9987544 43321111 112221100 00 1357888
Q ss_pred hhccCCeEEEeccchh----------HHHHHHHHHhcCCCCcEEEEe
Q 007987 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 175 av~~ADIVILaVPd~a----------~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+++++|++|++||... ...+.++|.++++..++|+.=
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~K 119 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIK 119 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEc
Confidence 9999999999987321 234666899999776766533
No 221
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.36 E-value=0.016 Score=61.83 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceec--CCCc--CCHHhhhccCCeEEEe
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~Vi-Vg~r~~sks~~~A~~~G~~~~--d~t~--~~~~Eav~~ADIVILa 185 (582)
++|+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +-.+ .+.+++.+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 47999998 99999999999864 145555 322222111111111221000 0001 2455666689999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
+|.....++..++.. .|+.|++.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877643 57778777653
No 222
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.33 E-value=0.0069 Score=62.81 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=54.2
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcC---CHHhhhccCCeE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~---~~~Eav~~ADIV 182 (582)
.++| +++.|||.|-+|++++..|.+. |. +|.|.+|+.++..+.+...+....-.... +..+++.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 3678 8999999999999999999988 87 68888887666556555433110000011 223556789999
Q ss_pred EEeccchh
Q 007987 183 LLLISDAA 190 (582)
Q Consensus 183 ILaVPd~a 190 (582)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
No 223
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.30 E-value=0.01 Score=61.94 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=57.1
Q ss_pred ccccCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~Gs-mG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-.++| |++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 35789 9999999997 999999999988 8877776641 1234566789999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|+... .+. ...+++|++|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996322 232 24578999887663
No 224
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.29 E-value=0.021 Score=59.33 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=59.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh-hccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea-v~~ADIVILaVPd~a 190 (582)
+||||||||.||..++..|.+.. -.++++...+++.....+.. ...... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 68999999999999999987530 00344433344432211111 122332 6788886 688999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007987 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (582)
..+....+.. .|. +++.+-|-
T Consensus 75 v~e~~~~iL~---~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCLT---AGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHHh---cCCCEEEEChhH
Confidence 8887776643 444 45555554
No 225
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0098 Score=63.09 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=65.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCCcCCHHhhhccCCeEEEe--cc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLL--IS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--d~t~~~~~Eav~~ADIVILa--VP 187 (582)
-||.|||.|-.|..-|+-...- |-+|.+.+.+..+....-...|.... -.+...++++++++|+||-+ +|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999888766544 77898888765443333333343310 11223478899999999975 45
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEec
Q 007987 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 188 d~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (582)
-...+. +.+++...||||++|++++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 555555 4457888999999988664
No 226
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.28 E-value=0.019 Score=53.70 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=44.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc----Cce-ecCCCcCCHHhhhccCCeEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFT-EENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~----G~~-~~d~t~~~~~Eav~~ADIVI 183 (582)
+||+|||. |+.|.++|..|... ++ ++++.++...+....+.+. .+. ..........+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEE
Confidence 58999999 99999999999987 54 6666665533333222221 010 00000124567789999999
Q ss_pred Eec
Q 007987 184 LLI 186 (582)
Q Consensus 184 LaV 186 (582)
++.
T Consensus 75 ita 77 (141)
T PF00056_consen 75 ITA 77 (141)
T ss_dssp ETT
T ss_pred Eec
Confidence 976
No 227
>PRK11579 putative oxidoreductase; Provisional
Probab=96.28 E-value=0.017 Score=60.99 Aligned_cols=84 Identities=10% Similarity=0.131 Sum_probs=54.6
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHHhhhc--cCCeEEEecc
Q 007987 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~-AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~-G~~~~d~t~~~~~Eav~--~ADIVILaVP 187 (582)
.+|||||+|.+|. .++..+... .+++++...+.+.+ +.+... +... ..+.+++++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDAT--KVKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHH--HHHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466777654 15665433333322 112223 2222 568899885 5799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 007987 188 DAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
+..+.++.... |+.|+-|.
T Consensus 74 ~~~H~~~~~~a---l~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAA---LEAGKHVV 92 (346)
T ss_pred cHHHHHHHHHH---HHCCCeEE
Confidence 99998776654 34566544
No 228
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.27 E-value=0.017 Score=60.19 Aligned_cols=64 Identities=28% Similarity=0.253 Sum_probs=40.2
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH---HcC------ceecCCCcCCHHhhhccCCeEE
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG------FTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~---~~G------~~~~d~t~~~~~Eav~~ADIVI 183 (582)
|+|||.|.||..+|..|... |+ +|++.+.+.......+. ..+ ... ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999998876 65 77776655332111111 111 011 001343 5689999999
Q ss_pred Eec
Q 007987 184 LLI 186 (582)
Q Consensus 184 LaV 186 (582)
+++
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 977
No 229
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.05 E-value=0.038 Score=58.14 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=77.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeccc
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaVPd 188 (582)
.+|.|.|. |++|..+.++|++. |+.+++...+.. .. .+-.|+.. +.++.|+-.. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~-~~--~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGK-GG--TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCC-CC--CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999995 88999999999987 776443444320 00 12257764 6788887776 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCCcEEEeccCCChhh
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~-~~i~~p~dv~VI~v~Pngpg~~ 243 (582)
....+++++... ..-+.+|++++||.+...++ ..+.-..+++++. ||+.|..
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG--PNc~Gi~ 128 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG--PNCPGII 128 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC--CCCCccc
Confidence 999999988554 23345788999997542000 0011123555554 8887765
No 230
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.02 E-value=0.028 Score=63.26 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=65.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--C---------CCc--CC-------
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N---------GTL--GD------- 171 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--d---------~t~--~~------- 171 (582)
.++.|||+|.+|...++.++.. |..|++.+++. ...+.++..|.... + ++. .+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~-~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999988 88876665554 45778887876520 0 000 01
Q ss_pred ---HHhhhccCCeEEEec--cchhHHH-HHHHHHhcCCCCcEEEEec
Q 007987 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 172 ---~~Eav~~ADIVILaV--Pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (582)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 334578899999987 2211223 3456788899999988664
No 231
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.98 E-value=0.05 Score=51.10 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.9
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeccc
Q 007987 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (582)
Q Consensus 114 IgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~---~~Eav~~ADIVILaVPd 188 (582)
|.|+|. |.+|..+++.|.+. |++|++..|+.++..+ ..++....+.+.+ +.++++++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887554333 4455432333444 45678899999999984
No 232
>PRK10206 putative oxidoreductase; Provisional
Probab=95.97 E-value=0.027 Score=59.83 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=54.3
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeccc
Q 007987 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~-AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVILaVPd 188 (582)
-+|||||+|.++. .++..+.... .+++++...+.+.+..+.+.+.+... ...+.+++++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999764 4556554320 14565433443333334455555221 1568999885 57999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE
Q 007987 189 AAQADNYEKIFSCMKPNSIL 208 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL 208 (582)
..+.++..+.. +.|+-|
T Consensus 75 ~~H~~~~~~al---~aGkhV 91 (344)
T PRK10206 75 DSHFEYAKRAL---EAGKNV 91 (344)
T ss_pred hHHHHHHHHHH---HcCCcE
Confidence 99987776543 345533
No 233
>PRK04148 hypothetical protein; Provisional
Probab=95.88 E-value=0.065 Score=50.46 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=67.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHHhhhccCCeEEEecc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Eav~~ADIVILaVP 187 (582)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... +......-+.-+++|+|--.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 789999999 899999999988 99875 55555666778888776432 2223334577899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 007987 188 DAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
|.....-+-+++..++..-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777766667777665554444
No 234
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.85 E-value=0.047 Score=57.74 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=43.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH----c----CceecCCCcCCHHhhhccCCe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A----GFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~----~----G~~~~d~t~~~~~Eav~~ADI 181 (582)
+||+|||+|.+|.++|..|... |+ ++.+.+....+....+.+ . .... +..+. +.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i---~~~~~-~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI---YAGDY-SDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE---EeCCH-HHhCCCCE
Confidence 7999999999999999999987 76 666666544332222221 1 1111 12233 56899999
Q ss_pred EEEecc
Q 007987 182 VLLLIS 187 (582)
Q Consensus 182 VILaVP 187 (582)
||++.-
T Consensus 77 vIitag 82 (315)
T PRK00066 77 VVITAG 82 (315)
T ss_pred EEEecC
Confidence 999653
No 235
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.83 E-value=0.012 Score=58.43 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=51.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeccch
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaVPd~ 189 (582)
++|+|||+|.+|.+++..+... ..|++++...+.++..... .-.|+.. ....++.+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1277765444443221111 1123321 113456677654 99999999999
Q ss_pred hHHHHHHHHH
Q 007987 190 AQADNYEKIF 199 (582)
Q Consensus 190 a~~~Vl~eI~ 199 (582)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 236
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.80 E-value=0.04 Score=60.90 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=67.0
Q ss_pred CEEEEEcc----chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~----GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
++|+|||. |+.|..+.++|++. |+ +|+ ....... .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 453 3333211 2357664 56888887788999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
+|++...+++++... ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998655 34456788999985
No 237
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.031 Score=58.63 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=58.0
Q ss_pred cccCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~Gs-mG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||.|. .|..++.-|... |..|.+..+. ..++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 156 DTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVVA 209 (285)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 9999999998 999999999887 8888776432 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++++|++|++++
T Consensus 210 vG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 210 VGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred CCCccc---cc--HHHcCCCcEEEEcc
Confidence 953332 22 15678999888765
No 238
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.74 E-value=0.056 Score=53.13 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=51.3
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHHcCceecCCCcCC---HHhhhccCCeEEEeccc
Q 007987 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (582)
Q Consensus 114 IgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-s~~~A~~~G~~~~d~t~~~---~~Eav~~ADIVILaVPd 188 (582)
|.|+|. |.+|++++..|.+. +++|.+..|+.++ ..+..+..|+........+ +.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 9999888887532 3345566777542222333 55689999999999993
No 239
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.73 E-value=0.033 Score=53.24 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=58.0
Q ss_pred cccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHHhhhccC
Q 007987 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (582)
Q Consensus 101 f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G-~~~~d~t~~~~~Eav~~A 179 (582)
|| ..-.|+| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+. .+.+ +.. +...... +-+.++
T Consensus 5 ~P-~~l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l-~~l~~i~~-~~~~~~~-~dl~~a 71 (157)
T PRK06719 5 YP-LMFNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEM-KELPYITW-KQKTFSN-DDIKDA 71 (157)
T ss_pred cc-eEEEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHH-HhccCcEE-EecccCh-hcCCCc
Confidence 56 3357899 9999999999999999999998 8887766332 22222 2222 221 1111222 236789
Q ss_pred CeEEEeccchhHHHHHHHHHh
Q 007987 180 DLVLLLISDAAQADNYEKIFS 200 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~ 200 (582)
|+||.+|.+...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887666655443
No 240
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.72 E-value=0.02 Score=61.41 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=61.6
Q ss_pred ccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 106 ~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
..++| ++|.|+|. |.||..+++.|... .|. ++++..|+..+....+.+.+. +...+.++++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~----~~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGG----GKILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhcc----ccHHhHHHHHccCCEEE
Confidence 46888 99999998 89999999999743 043 666666654444444444321 12456788999999999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
.++...... ++.. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 988743221 1210 2346777777664
No 241
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.019 Score=60.18 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHH--hhhccCCeEE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLVL 183 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~--Eav~~ADIVI 183 (582)
..+| +++.|+|.|-.+.|++..|.+. |. +|+|.+|+.++..+.+...+-........... +...++|+||
T Consensus 123 ~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliI 195 (283)
T COG0169 123 DVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLI 195 (283)
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEE
Confidence 4467 9999999999999999999999 86 78899998777666666554110000011111 2222699999
Q ss_pred EeccchhHHHH----HHHHHhcCCCCcEEEEe
Q 007987 184 LLISDAAQADN----YEKIFSCMKPNSILGLS 211 (582)
Q Consensus 184 LaVPd~a~~~V----l~eI~~~Lk~GaiL~~a 211 (582)
.+||....... +. ...++++.++.++
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 99997766432 12 3456677777644
No 242
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.67 E-value=0.021 Score=68.99 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=53.5
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhh---------cCCceEEEEecCCcccHHHHHHc-Cc--eecCCCcCCHHh---
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEA---------KSDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE--- 174 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~---------g~G~~ViVg~r~~sks~~~A~~~-G~--~~~d~t~~~~~E--- 174 (582)
.+++|+|||+|.||..++..|.+. .+. ..+..|.|+++...+..+.+... ++ ...| +.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~~ 644 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLLK 644 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHHH
Confidence 348999999999999999999765 100 00123666665433333333333 42 1101 345444
Q ss_pred hhccCCeEEEeccchhHHHHHHH
Q 007987 175 TISGSDLVLLLISDAAQADNYEK 197 (582)
Q Consensus 175 av~~ADIVILaVPd~a~~~Vl~e 197 (582)
+++++|+|+.|+|+..+..+...
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHH
Confidence 44689999999999988777764
No 243
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.64 E-value=0.04 Score=52.03 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.5
Q ss_pred ccccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-.++| |+|.|||-+ ..|..++.-|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 35789 999999966 7899999999887 8887765432 1245678999999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
++.-.. +++ ...+|+|++|++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 233 3458899987743
No 244
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.63 E-value=0.034 Score=62.66 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=65.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC---------c----CCH-
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT---------L----GDI- 172 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~--d~t---------~----~~~- 172 (582)
.| .+|.|||+|.+|..-++.++.. |.+|++.++ +....+.+++.|.... +.. . .+.
T Consensus 164 pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~-~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDT-RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHH
Confidence 46 8999999999999999999988 887665554 4456788999997510 100 0 010
Q ss_pred -------HhhhccCCeEEEeccchh--HHHH-HHHHHhcCCCCcEEEEec
Q 007987 173 -------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 173 -------~Eav~~ADIVILaVPd~a--~~~V-l~eI~~~Lk~GaiL~~a~ 212 (582)
.+.++++|+||-++.-.. ...+ .++....||+|.+|++.+
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 112357999999886322 2344 477788899999877653
No 245
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.61 E-value=0.069 Score=54.49 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=42.2
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHH-------c-CceecCCCcCCHHhhhccCC
Q 007987 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (582)
Q Consensus 114 IgIIG~-GsmG~AiA~nLrds~~~~g~G----~~ViVg~r~~sks~~~A~~-------~-G~~~~d~t~~~~~Eav~~AD 180 (582)
|+|||. |.+|..++..|... | .++.+.+....+....+.+ . .... ....+..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4676666543322221111 0 1111 01245578899999
Q ss_pred eEEEec
Q 007987 181 LVLLLI 186 (582)
Q Consensus 181 IVILaV 186 (582)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
No 246
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.54 E-value=0.054 Score=61.96 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=55.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH----hhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~----Eav~~ADIVILaVP 187 (582)
.+|.|+|+|.+|..+++.|++. |+++++-+ .+++..+.+++.|...--|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 88876654 4556678888888754222233322 12678999999999
Q ss_pred chhHHH
Q 007987 188 DAAQAD 193 (582)
Q Consensus 188 d~a~~~ 193 (582)
+.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 986653
No 247
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.49 E-value=0.059 Score=60.82 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=54.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH----hhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~----Eav~~ADIVILaVP 187 (582)
.+|.|+|+|.+|..+++.|++. |+++++-+. +++..+.+++.|+..-.+...+.+ .-++++|.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~-d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIET-SRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3799999999999999999998 888766554 455577788888754323333322 12568999999999
Q ss_pred chhHH
Q 007987 188 DAAQA 192 (582)
Q Consensus 188 d~a~~ 192 (582)
++...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87654
No 248
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.48 E-value=0.038 Score=48.80 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=48.8
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
.++| ++|.|||.|.+|..=++.|.+. |.+|.|..... . ..+..+... -...++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~-~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----E-FSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----H-HHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----h-hhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 3688 9999999999999999999998 88887765542 1 112223221 123346688899999999
Q ss_pred cchhHHHHHH
Q 007987 187 SDAAQADNYE 196 (582)
Q Consensus 187 Pd~a~~~Vl~ 196 (582)
.+....+-+.
T Consensus 69 ~d~~~n~~i~ 78 (103)
T PF13241_consen 69 DDPELNEAIY 78 (103)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9877654333
No 249
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.45 E-value=0.022 Score=62.43 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=48.7
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHHH--------HcCceecCCCcCCHHhhhccCCe
Q 007987 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~--nLrds~~~~g~G~~ViVg~r~~sks~~~A~--------~~G~~~~d~t~~~~~Eav~~ADI 181 (582)
.||+|||.|++|.+.+. .+.... +-.|.+|++.+++..+ .+... ..+....=....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998776 443210 1125677766654332 22111 11111000014577899999999
Q ss_pred EEEeccchhHHHHHH
Q 007987 182 VLLLISDAAQADNYE 196 (582)
Q Consensus 182 VILaVPd~a~~~Vl~ 196 (582)
||.+++........+
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999766554443
No 250
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.44 E-value=0.048 Score=54.31 Aligned_cols=105 Identities=12% Similarity=0.223 Sum_probs=64.6
Q ss_pred CEEEEEccchhHHHHHHHH--HHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nL--rds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVILaVP 187 (582)
.++.|||+|++|+|++..- .+. |++++-..+.++...-.- -.++.+ ....++++.++ +.|+.||+||
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~-~~~v~V--~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTK-IGDVPV--YDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCcc-cCCeee--echHHHHHHHHhcCccEEEEEcc
Confidence 6899999999999998642 234 777776666544322111 122332 11345666676 6889999999
Q ss_pred chhHHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCCcEEEec
Q 007987 188 DAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (582)
Q Consensus 188 d~a~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~ 236 (582)
-....++.+.+.. .+| .++-|+..- +..|+++.|.-+.
T Consensus 156 a~~AQ~vad~Lv~aGVk--GIlNFtPv~---------l~~pe~V~V~~iD 194 (211)
T COG2344 156 AEHAQEVADRLVKAGVK--GILNFTPVR---------LQVPEGVIVENID 194 (211)
T ss_pred HHHHHHHHHHHHHcCCc--eEEeccceE---------ecCCCCcEEEEee
Confidence 8777777776543 232 255555422 2567777665544
No 251
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.42 E-value=0.11 Score=56.39 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=57.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHH----hhhccCCeEEEe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~--G~~~~d~t~~~~~----Eav~~ADIVILa 185 (582)
++|.|||+|.+|..+++.|.+. |.++++.+.+. +..+...+. ++..-.+...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~-~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDP-ERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 88887665543 334444443 3321112222322 235789999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+++...--+...+...+.+..++..+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 99764433333344444455555433
No 252
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.42 E-value=0.068 Score=56.93 Aligned_cols=115 Identities=11% Similarity=0.169 Sum_probs=80.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEec
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s--ks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaV 186 (582)
.+|.|-| .|.+|.-+++.+++. |-+|+.|..+.. .... ..|+.. ..++.|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6899999 599999999999999 888888887643 2221 137764 6789999887 89999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhhh---hhcccccCCCCCcEEEeccCCChhh
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~---~~~~~i~~p~dv~VI~v~Pngpg~~ 243 (582)
|+....+.+.|.... .-..+|+++.||..+. +++ .+.-..++.+ +=||+||-.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~-~~~~~~g~rl--iGPNc~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKH-ALLSQNKTRL--IGPNCPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHH-HHhhcCCCEE--ECCCCceEE
Confidence 999998888774431 1234788999997542 211 1111134444 459988866
No 253
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.39 E-value=0.039 Score=55.06 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=61.6
Q ss_pred ccccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC-cCC----HHhhhccC
Q 007987 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGD----IYETISGS 179 (582)
Q Consensus 106 ~~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t-~~~----~~Eav~~A 179 (582)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.+.+............-. .+ ..+ +.+.+++|
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs---~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE---KHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc---cccccchhhHHHHHhhhC
Confidence 35899 999999977 7899999999888 888877653321111100000000 00 012 67889999
Q ss_pred CeEEEeccchhHHHHHHHHHhcCCCCcEEEEecC
Q 007987 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (582)
|+||.+++..... +. ...+|+|++|++++-
T Consensus 128 DIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 128 DVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 9999999965431 22 345789999988763
No 254
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.30 E-value=0.068 Score=56.10 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=78.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeccc
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaVPd 188 (582)
.+|.|.| -|.+|..+-.+|+.. |.+++.+..++ +.. .+-.|+.. +.++.|+-+. .|++++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~~--~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KGG--TTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CCc--ceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6799999 799999999999988 88766666543 111 12357764 6688887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccC--CCCCcEEEeccCCChhh
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDF--PKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~--p~dv~VI~v~Pngpg~~ 243 (582)
....+++++... ..-+.+|++++||.... +...... ..+++++. ||+.|..
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~~-~~~l~~~a~~~girilG--PNc~Gii 126 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVHD-MLKVKRYMEESGTRLIG--PNCPGII 126 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHcCCEEEC--CCCceEE
Confidence 999999988554 22345788999996431 1100011 12445544 8887776
No 255
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.25 E-value=0.091 Score=51.93 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=54.1
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHc----
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~-------------------sks~~~A~~~---- 160 (582)
.+.|+. ++|.|||+|.+|..++++|... |+ ++.+.++.. .|....++..
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 567788 9999999999999999999998 77 555554431 1111111111
Q ss_pred -Ccee--cCCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 161 -G~~~--~d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
.+.. .+..+. +..+.++++|+||.++........+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 011111 23467889999999987655555666543
No 256
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.11 E-value=0.096 Score=56.18 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=47.9
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcCceec-----------CC---CcCCHHhhhcc
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks-~~~A~~~G~~~~-----------d~---t~~~~~Eav~~ 178 (582)
|||+|+|.+|..+++.+... .+++++...+..... ...|...|+... +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156665444432221 133443332110 00 03468888899
Q ss_pred CCeEEEeccchhHHH
Q 007987 179 SDLVLLLISDAAQAD 193 (582)
Q Consensus 179 ADIVILaVPd~a~~~ 193 (582)
+|+|+.++|......
T Consensus 76 vDiVve~Tp~~~~~~ 90 (333)
T TIGR01546 76 VDIVVDATPGGIGAK 90 (333)
T ss_pred CCEEEECCCCCCChh
Confidence 999999999776644
No 257
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.08 E-value=0.097 Score=50.59 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=50.8
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.+
T Consensus 33 ~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVSA 86 (160)
T ss_dssp STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE-
T ss_pred CCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEeee
Confidence 4889 999999988 6999999999998 8877664332 12456788999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... ++ ...+|+|++|+++.
T Consensus 87 ~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 87 VGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp SSSTT----B---GGGS-TTEEEEE--
T ss_pred eccccc---cc--cccccCCcEEEecC
Confidence 985332 22 34679999888764
No 258
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.05 E-value=0.076 Score=52.66 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=60.0
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC---Cc-------------ccHHH--HH---H-c
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS-------------RSFAE--AR---A-A 160 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~---~s-------------ks~~~--A~---~-~ 160 (582)
..+.|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.++. .+ +.... ++ + .
T Consensus 15 ~q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 15 IVQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HHHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC
Confidence 3567788 9999999999999999999998 77 45555443 11 00000 00 0 0
Q ss_pred C-cee--cCCCc--CCHHhhhccCCeEEEeccchhHHH-HHHHHHhcCCCCcEEEEecCc
Q 007987 161 G-FTE--ENGTL--GDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 161 G-~~~--~d~t~--~~~~Eav~~ADIVILaVPd~a~~~-Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
. ... .+..+ .+..+.++++|+||-++-+..... +++++...++...+++ .+|+
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 0 110 00001 123456788999999964434443 4566766665543444 5665
No 259
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.068 Score=58.05 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=47.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchhH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~ 191 (582)
++|.|||+|.+|.++|+.|++. |.+|++.+++.. .... .+... +......+...+++|+||.+.+....
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~~ 72 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKKE 72 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCCC
Confidence 8899999999999999999998 988765554322 1211 11110 00012233445779999998765544
Q ss_pred HHHHHH
Q 007987 192 ADNYEK 197 (582)
Q Consensus 192 ~~Vl~e 197 (582)
.+.+++
T Consensus 73 ~~~l~~ 78 (418)
T PRK00683 73 HPWVQA 78 (418)
T ss_pred cHHHHH
Confidence 444443
No 260
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.00 E-value=0.15 Score=53.99 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceecCC-C-cCCHHhhhccCCeEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENG-T-LGDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~----~~G~~~~d~-t-~~~~~Eav~~ADIVI 183 (582)
.||+|||+|.+|.++|..|... |+ ++++.+.+..+....+. ...+..... . ..++++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999877 65 56555544332222222 221110000 1 245554 79999999
Q ss_pred Eec
Q 007987 184 LLI 186 (582)
Q Consensus 184 LaV 186 (582)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 261
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.94 E-value=0.11 Score=59.96 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH----hhhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~----Eav~~ADIVILaVP 187 (582)
++|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|..+--|...+.+ .-+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 8887655 44455677788888754322233332 23568999999999
Q ss_pred chhHHH
Q 007987 188 DAAQAD 193 (582)
Q Consensus 188 d~a~~~ 193 (582)
|+....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876654
No 262
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.88 E-value=0.19 Score=50.13 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=55.1
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~-G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.|+| ++|.|||.|.+|..-++.|.+. |.+|+|......+.+....+. .+....+.. . .+.+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEEC
Confidence 4889 9999999999999999999998 888877655433333333333 333211111 2 3446789999999
Q ss_pred ccchhHH-HHHHH
Q 007987 186 ISDAAQA-DNYEK 197 (582)
Q Consensus 186 VPd~a~~-~Vl~e 197 (582)
+.+.... .++..
T Consensus 77 t~d~~ln~~i~~~ 89 (205)
T TIGR01470 77 TDDEELNRRVAHA 89 (205)
T ss_pred CCCHHHHHHHHHH
Confidence 9987553 34443
No 263
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.066 Score=56.27 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=57.4
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-| ..|..+|.-|.+. |..|.+... ++ .++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs---~t----------------~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 154 EIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHI---LT----------------KDLSFYTQNADIVCVG 207 (285)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeC---Cc----------------HHHHHHHHhCCEEEEe
Confidence 5789 999999999 9999999999988 888776532 11 2356789999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+..... +. ..++++|++|++++
T Consensus 208 vG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 208 VGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred cCCCCc---CC--HHHcCCCcEEEEee
Confidence 975433 32 23568999988764
No 264
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.85 E-value=0.074 Score=53.52 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=31.7
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s 151 (582)
..++| ++|+|.|+|++|..+|+.|.+. |..++...+.+.
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDG 57 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 46789 9999999999999999999998 886544444444
No 265
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.85 E-value=0.08 Score=55.49 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.4
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| +++.|||.+ ..|..++.-|... |..|.+..+. ..++.+.+++||+||.+
T Consensus 149 ~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~A 202 (279)
T PRK14178 149 SIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVSA 202 (279)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEEC
Confidence 5899 999999999 9999999999877 7777766532 12467889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++-. .++. ...+|+|++|++++
T Consensus 203 vgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 203 AGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCcc---cccC--HHHcCCCcEEEEee
Confidence 9733 2333 12368999988765
No 266
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.81 E-value=0.071 Score=57.05 Aligned_cols=90 Identities=19% Similarity=0.126 Sum_probs=54.1
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCC-c-eEEEEecCCcccHHHHHH-c--CceecCCCcCC---HHhhhccCCeEEEe
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G-~-~ViVg~r~~sks~~~A~~-~--G~~~~d~t~~~---~~Eav~~ADIVILa 185 (582)
|.|||+|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888865443333322 1 22110001233 45688999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+|+.....+++.. ++.|.-.++.+
T Consensus 75 ~gp~~~~~v~~~~---i~~g~~yvD~~ 98 (386)
T PF03435_consen 75 AGPFFGEPVARAC---IEAGVHYVDTS 98 (386)
T ss_dssp SSGGGHHHHHHHH---HHHT-EEEESS
T ss_pred CccchhHHHHHHH---HHhCCCeeccc
Confidence 9998666666532 22344445533
No 267
>PRK05442 malate dehydrogenase; Provisional
Probab=94.78 E-value=0.12 Score=55.02 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCc------ccHHHHHHc-----CceecCCCcCC
Q 007987 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLGD 171 (582)
Q Consensus 111 ikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~-------~ViVg~r~~s------ks~~~A~~~-----G~~~~d~t~~~ 171 (582)
..||+|||+ |.+|.++|..|... |+ ++++.+.... ..++..... .... ..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ecC
Confidence 479999998 99999999988765 33 4544444221 122222221 1111 234
Q ss_pred HHhhhccCCeEEEecc
Q 007987 172 IYETISGSDLVLLLIS 187 (582)
Q Consensus 172 ~~Eav~~ADIVILaVP 187 (582)
..+.+++||+||++.-
T Consensus 74 ~y~~~~daDiVVitaG 89 (326)
T PRK05442 74 PNVAFKDADVALLVGA 89 (326)
T ss_pred hHHHhCCCCEEEEeCC
Confidence 4578899999998653
No 268
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.77 E-value=0.068 Score=55.64 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=49.0
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCC---cccHHHHHHc---C--ceecCCCcC---CHHhh
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYET 175 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~-ViVg~r~~---sks~~~A~~~---G--~~~~d~t~~---~~~Ea 175 (582)
++| +++.|+|.|-+|.|++..|.+. |.+ |.+.+|+. .+..+.+.+. + ......... +..+.
T Consensus 124 ~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~ 196 (289)
T PRK12548 124 VKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAE 196 (289)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhh
Confidence 567 8999999999999999999988 885 88888764 3333333221 1 000000011 12345
Q ss_pred hccCCeEEEeccchhH
Q 007987 176 ISGSDLVLLLISDAAQ 191 (582)
Q Consensus 176 v~~ADIVILaVPd~a~ 191 (582)
++++|+||.+||....
T Consensus 197 ~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 197 IASSDILVNATLVGMK 212 (289)
T ss_pred hccCCEEEEeCCCCCC
Confidence 5678899998886543
No 269
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.12 Score=54.49 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred cccCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~Gs-mG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||.|. .|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 161 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 161 DIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 9999999998 999999999988 8777765421 23567788999999997
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+--.. .+. ...+++|++|++++
T Consensus 215 vG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 215 TGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred cCCcc---ccC--HHHcCCCcEEEEec
Confidence 76432 222 23678999988764
No 270
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.61 E-value=0.094 Score=54.87 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=51.1
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCc---ccHHHHHHcCceecC-CCcCCH------Hhh
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGDI------YET 175 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~s---ks~~~A~~~G~~~~d-~t~~~~------~Ea 175 (582)
.++| +++.|||.|-.++|++..|... |. ++.|.+|+.. +..+.+...+..... -.+.+. .+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3577 8999999999999999999887 76 7888888632 434444432210000 001122 235
Q ss_pred hccCCeEEEeccchhH
Q 007987 176 ISGSDLVLLLISDAAQ 191 (582)
Q Consensus 176 v~~ADIVILaVPd~a~ 191 (582)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6679999999997653
No 271
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.54 E-value=0.12 Score=55.06 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=41.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcc------cHHHHHHc-----CceecCCCcCCH
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~-------~ViVg~r~~sk------s~~~A~~~-----G~~~~d~t~~~~ 172 (582)
+||+|||+ |.+|.++|..|... |+ ++++.+..... ..+..... .+.. ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999999876 44 45555442211 12222111 1111 1234
Q ss_pred HhhhccCCeEEEecc
Q 007987 173 YETISGSDLVLLLIS 187 (582)
Q Consensus 173 ~Eav~~ADIVILaVP 187 (582)
.+.+++||+||++.-
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 577899999999653
No 272
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.52 E-value=0.063 Score=51.31 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=62.3
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC-----------------
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~----------------- 167 (582)
+..+.. .+|.|+|.|..|..-+.-+..- |.++++.+.. ....+.....+.....-
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344455 7999999999999999998887 9988776554 33334444444321000
Q ss_pred -----CcCCHHhhhccCCeEEE--eccchhHHHHHH-HHHhcCCCCcEEEEec
Q 007987 168 -----TLGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (582)
Q Consensus 168 -----t~~~~~Eav~~ADIVIL--aVPd~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (582)
+.....+.++.+|+||. ..|....+.++. +....|+++.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 00124567889999996 445666666664 6777899999998774
No 273
>PLN02602 lactate dehydrogenase
Probab=94.46 E-value=0.27 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=41.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceecCCCc---CCHHhhhccCCeE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENGTL---GDIYETISGSDLV 182 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~----~~G~~~~d~t~---~~~~Eav~~ADIV 182 (582)
+||+|||.|.+|.++|..|... ++ ++++.+....+....+. ...+.. ...+ .+.+ .+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~-~~~i~~~~dy~-~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLP-RTKILASTDYA-VTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCC-CCEEEeCCCHH-HhCCCCEE
Confidence 5999999999999999999877 65 55555544332222222 111110 0001 2444 48999999
Q ss_pred EEec
Q 007987 183 LLLI 186 (582)
Q Consensus 183 ILaV 186 (582)
|++.
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 9974
No 274
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.45 E-value=0.2 Score=52.95 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=42.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCccc----HHHHHHcCcee-c--CCCcCCHHhhhccCCeEE
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS----FAEARAAGFTE-E--NGTLGDIYETISGSDLVL 183 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks----~~~A~~~G~~~-~--d~t~~~~~Eav~~ADIVI 183 (582)
||+|||.|.+|.++|..|... ++ ++++.+....+. .+.....-+.. . ..+..+ .+.+++||+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 699999999999999999877 65 565555543322 22222221110 0 001223 46789999999
Q ss_pred Eecc
Q 007987 184 LLIS 187 (582)
Q Consensus 184 LaVP 187 (582)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9653
No 275
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.34 E-value=0.19 Score=52.87 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=41.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHH-------HcCc--eecCCCcCCHHhhhc
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~--sks~~~A~-------~~G~--~~~d~t~~~~~Eav~ 177 (582)
+||+|||. |..|..++..|... |+ +|++.++.. .+....+. ..+. .. . ...+. +.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d~-~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSDL-SDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCCH-HHhC
Confidence 58999998 99999999999887 65 466666532 11111110 1111 11 0 01243 5689
Q ss_pred cCCeEEEecc
Q 007987 178 GSDLVLLLIS 187 (582)
Q Consensus 178 ~ADIVILaVP 187 (582)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999885
No 276
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.24 E-value=0.16 Score=45.14 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--HcCceecCCCcCCHHhhhccCCeEEEeccchhHHH-HHHH
Q 007987 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEK 197 (582)
Q Consensus 121 smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~--~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a~~~-Vl~e 197 (582)
+-+..++..|++. |.+|.+.+..-........ ..++.. ..+.+++++++|+||++++-....+ -+++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~ 86 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDEEEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWEE 86 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHHHHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccChHHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHHH
Confidence 6777888888888 9998776654332222111 246764 5688999999999999999988877 4667
Q ss_pred HHhcCCCCcEEEEecCc
Q 007987 198 IFSCMKPNSILGLSHGF 214 (582)
Q Consensus 198 I~~~Lk~GaiL~~a~G~ 214 (582)
+...|+++.+|++.-|+
T Consensus 87 ~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 87 IAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHSCSSEEEEESSST
T ss_pred HHHhcCCCCEEEECccc
Confidence 88888888889888765
No 277
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.24 E-value=0.16 Score=54.17 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=54.7
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hh-hhcCCceEEEE-ecCC------cccHH----HHHHcCceec-C--CCcCCHH
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVG-LRKG------SRSFA----EARAAGFTEE-N--GTLGDIY 173 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds---~~-~~g~G~~ViVg-~r~~------sks~~----~A~~~G~~~~-d--~t~~~~~ 173 (582)
.+|+|||+|.||..+++.|++. +. ..|.+++++.. +++. .-..+ .+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999998764 11 11334554322 3211 01122 2222332110 0 0123677
Q ss_pred hhh--ccCCeEEEeccchhHH-HH-HHHHHhcCCCCcEEEEe
Q 007987 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGLS 211 (582)
Q Consensus 174 Eav--~~ADIVILaVPd~a~~-~V-l~eI~~~Lk~GaiL~~a 211 (582)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 777 3689999999986552 22 33345556677765543
No 278
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.18 E-value=0.13 Score=56.43 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=49.3
Q ss_pred ccccCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~A-iA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
+..++ ++|.|||+|..|.+ +|+-|++. |.+|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45667 89999999999999 89999998 99987766543332333455677641 1223345678999887
Q ss_pred e
Q 007987 185 L 185 (582)
Q Consensus 185 a 185 (582)
.
T Consensus 73 s 73 (461)
T PRK00421 73 S 73 (461)
T ss_pred C
Confidence 3
No 279
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.13 E-value=0.098 Score=52.96 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=28.9
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~Vi 144 (582)
..++| ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 55788 9999999999999999999988 88876
No 280
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.01 E-value=0.2 Score=53.95 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=59.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEecc---
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViV-g~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVP--- 187 (582)
.+|||||+ .+|..++..++.. ..+++++. .++..++..+.|++.|+.. ..+.+|++.+.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999876 11355533 3344456667888888763 6889999988888888774
Q ss_pred -chhHHHHHHHHHhcCCCCcEEE
Q 007987 188 -DAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 188 -d~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
+..+.++..+ .|+.|+-|.
T Consensus 75 P~~~H~e~a~~---aL~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARA---LLARGIHVL 94 (343)
T ss_pred CCccHHHHHHH---HHhCCCeEE
Confidence 4566665554 345676554
No 281
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.95 E-value=0.4 Score=51.13 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=41.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccHHHHHH--cCceec-CC--CcCCHHhhh
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGFTEE-NG--TLGDIYETI 176 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~-------~ViVg~r~~--sks~~~A~~--~G~~~~-d~--t~~~~~Eav 176 (582)
.||+|||. |.+|.++|..|... |+ ++++.+... ++....+.+ +..... .. ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 455555432 112222221 111000 00 013445788
Q ss_pred ccCCeEEEecc
Q 007987 177 SGSDLVLLLIS 187 (582)
Q Consensus 177 ~~ADIVILaVP 187 (582)
++||+||++.-
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999999653
No 282
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.17 Score=53.19 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+... + ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs---~----------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHI---F----------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CcCHHHHHhhCCEEEEe
Confidence 4789 999999999 8999999999887 777765532 1 12456789999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++++|++|+++.
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEee
Confidence 985432 32 34578999888764
No 283
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.89 E-value=0.2 Score=53.21 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=41.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHHhhhccCC
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSD 180 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds-~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~---------t~~~~~Eav~~AD 180 (582)
.||+|||. |.+|.+++..|... +.....+.++++.++........+...-+. |. ...+..++++++|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~--d~~~~~~~~~~~~~~~~~~l~~aD 80 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQ--DCAFPLLKSVVATTDPEEAFKDVD 80 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehh--hccccccCCceecCCHHHHhCCCC
Confidence 47999999 99999999999875 000001236666665332111111111111 10 0245568889999
Q ss_pred eEEEec
Q 007987 181 LVLLLI 186 (582)
Q Consensus 181 IVILaV 186 (582)
+||++.
T Consensus 81 iVI~tA 86 (325)
T cd01336 81 VAILVG 86 (325)
T ss_pred EEEEeC
Confidence 999864
No 284
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.88 E-value=0.22 Score=52.12 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=41.6
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--Ccee-cCCC---cCCHHhhhccCCeEEEe
Q 007987 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT---LGDIYETISGSDLVLLL 185 (582)
Q Consensus 114 IgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~--G~~~-~d~t---~~~~~Eav~~ADIVILa 185 (582)
|+|||+|.+|.++|..|... |+ ++++.+...++....+.+. .... .... ..+ .+.+++||+||++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 68999999999999999887 74 5666665443322222210 1000 0000 123 4688999999998
Q ss_pred cc
Q 007987 186 IS 187 (582)
Q Consensus 186 VP 187 (582)
..
T Consensus 74 ag 75 (300)
T cd00300 74 AG 75 (300)
T ss_pred CC
Confidence 76
No 285
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.84 E-value=0.11 Score=55.41 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=45.3
Q ss_pred cccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHHHc-CceecCCCc-CCHHhhhc
Q 007987 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA-GFTEENGTL-GDIYETIS 177 (582)
Q Consensus 105 ~~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~--sks~~~A~~~-G~~~~d~t~-~~~~Eav~ 177 (582)
|.+++. +||+|||. |.+|.+++..|... ++ ++++.+... ....+..... .+...+.+- .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 356677 99999999 99999999999865 43 555555421 1111211101 112101111 22267899
Q ss_pred cCCeEEEecc
Q 007987 178 GSDLVLLLIS 187 (582)
Q Consensus 178 ~ADIVILaVP 187 (582)
++|+||++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998654
No 286
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.18 Score=53.26 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=57.4
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999976 7899999999988 8777665321 13567788999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-.. ++. ..++|+|++|+++.
T Consensus 209 vGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 209 AGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 233 34678999888764
No 287
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.78 E-value=0.6 Score=52.04 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=41.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcC--Cc--eEEEEecCCcccHHHHHH--cCc-eecCC-C-cCCHHhhhccCCe
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AGF-TEENG-T-LGDIYETISGSDL 181 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~--G~--~ViVg~r~~sks~~~A~~--~G~-~~~d~-t-~~~~~Eav~~ADI 181 (582)
-||+|||. |++|.++|-.|... .=.|. ++ +++..+...++....+.+ ++. ..... . ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 99999999988753 00110 22 455444444333322221 111 00000 0 1234577899999
Q ss_pred EEEecc
Q 007987 182 VLLLIS 187 (582)
Q Consensus 182 VILaVP 187 (582)
||++.-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999653
No 288
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.78 E-value=0.3 Score=52.30 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=56.9
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccH---HHHH
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEAR 158 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~---------------------sks~---~~A~ 158 (582)
..+.|++ ++|.|||+|..|..+|.+|..+ |+ ++.+.++.. ++.. +...
T Consensus 18 ~Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 18 GQRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred HHHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 3577888 9999999999999999999998 76 555554431 0100 1111
Q ss_pred H--cCceec----CCCcCCHHhhhccCCeEEEeccchhHHHHHHHHHh
Q 007987 159 A--AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (582)
Q Consensus 159 ~--~G~~~~----d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~ 200 (582)
+ .++.++ +.+..+.+++++++|+||.++-+....-++.++..
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~ 138 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQ 138 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 1 122110 11112356788999999999976665556666543
No 289
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.76 E-value=0.19 Score=52.93 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=57.1
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|... |..|.+.... ..++++.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999966 7899999999887 7777665321 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++|+|++|+++.
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDVG 227 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985432 32 35678999888764
No 290
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.64 E-value=0.19 Score=53.20 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=57.4
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|... |..|.+... + ..++++.+++||+||.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs---~----------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHS---R----------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999977 7899999999887 877776532 1 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-. .++. ..++|+|++|+++.
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEee
Confidence 9753 2333 35678999888764
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.64 E-value=0.26 Score=53.02 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=56.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHHhhh-ccCCeEEEec
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-SGSDLVLLLI 186 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Eav-~~ADIVILaV 186 (582)
.| ++|+|+|+|-.|+--.+-++.. |.+|+...++. +..+.|++.|.... +..-.+..+.+ +.+|+|+.++
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~~-~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRSE-EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCCh-HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 46 8999999998888877777777 88887666654 44788899886421 11111122233 3399999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 007987 187 SDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
++.. ++.-.+.|+++-.++
T Consensus 238 ~~~~----~~~~l~~l~~~G~~v 256 (339)
T COG1064 238 GPAT----LEPSLKALRRGGTLV 256 (339)
T ss_pred Chhh----HHHHHHHHhcCCEEE
Confidence 9322 333334455555544
No 292
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.60 E-value=0.3 Score=53.05 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=92.5
Q ss_pred CEEEEEcc-chhHHHHHHHHH-HhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCCH-H-hhhccCCeEEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLr-ds~~~~g~G~~---ViVg~r~~sks~~~A~~~G~~~~d~t~~~~-~-Eav~~ADIVIL 184 (582)
++|||||+ |..|+.+.+.|. +. .+. ++..... ++..+ ...|.-....+.+. . +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~--~~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQA--APSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCC--cCCCCCCcceEEcCcccccccCCCEEEE
Confidence 57999996 999999999888 44 442 2222111 11111 11111000012222 1 35678999999
Q ss_pred eccchhHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEE
Q 007987 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~al 262 (582)
+.+.....++..... +.| ++|++.++.. ..-+|++.| -|--....+..... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~---------Rmd~dVPLV--VPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASSL---------RMKDDAVII--LDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChhh---------hcCCCCCEE--eCCcCHHHHHhHHh-------CCcCe-
Confidence 998876666655544 467 6788877652 122344443 45443343332111 35533
Q ss_pred EeeccCCCHHHHHHHH-HHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHH
Q 007987 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFT 324 (582)
Q Consensus 263 iAv~qd~tgeale~al-ala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lV 324 (582)
|+ +++++--.+-.++ .+.+..|-.+++-||+. .+||.+...++.+.+...
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQ-----------AvSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQ-----------AASGGGARHMRELLTQMG 179 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEech-----------hhhhcCHHHHHHHHHHHH
Confidence 23 3444544444444 44445665566666643 489998887777765543
No 293
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.57 E-value=0.22 Score=52.29 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.2
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4799 999999976 7899999999988 8777665421 13567888999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+.-... +. ..++|+|++|+++
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 32 3457899998876
No 294
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.51 E-value=0.22 Score=52.27 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=57.2
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999976 7899999999887 8777665321 13467888999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++|+|++|+++.
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEee
Confidence 985443 32 34678999888764
No 295
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.51 E-value=0.23 Score=52.24 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=57.5
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999976 8899999999987 7777665321 23567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++|+|++|+++.
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 32 35678999888764
No 296
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.50 E-value=0.2 Score=53.85 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.4
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
..++| ++|.|||.|-||.-.+++|++. |. ++++.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34788 9999999999999999999998 86 68888886421 111100 0011133468999998
Q ss_pred ec
Q 007987 185 LI 186 (582)
Q Consensus 185 aV 186 (582)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 297
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.46 E-value=0.23 Score=52.30 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=57.1
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+... + ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs---~----------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHS---R----------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CCCHHHHHhhCCEEEEe
Confidence 4889 999999977 7899999999887 777766532 1 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++|+|++|+++.
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985442 32 34678999888764
No 298
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.40 E-value=0.15 Score=53.37 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=50.8
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCC--CcCC---HHhhhccCC
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~--t~~~---~~Eav~~AD 180 (582)
.++| +++.|||.|-.|+|++-.|.+. |. ++.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 3567 8999999999999999999988 87 67788887555555554321000000 0112 233456789
Q ss_pred eEEEeccchh
Q 007987 181 LVLLLISDAA 190 (582)
Q Consensus 181 IVILaVPd~a 190 (582)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999998543
No 299
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.35 E-value=0.24 Score=52.07 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=57.0
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|... |..|.+... + ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs---~----------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHS---K----------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeC---C----------------chhHHHHHHhCCEEEEe
Confidence 4789 999999966 8999999999887 777766532 1 23567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-.. ++. ..++++|++|++++
T Consensus 209 vG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 209 VGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred cCCCC---cCC--HHHcCCCCEEEEee
Confidence 97543 232 24568999988764
No 300
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.30 E-value=0.19 Score=55.74 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=48.6
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC-CHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~-~~~Eav~~ADIVIL 184 (582)
..+.+ ++|.|+|+|..|.++++-|++. |.+|.+.+++.....+...+.|+... .. ...+-+.+.|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 45667 8999999999999999999999 98877766543332233345687641 11 22344678899887
Q ss_pred e
Q 007987 185 L 185 (582)
Q Consensus 185 a 185 (582)
.
T Consensus 81 S 81 (473)
T PRK00141 81 S 81 (473)
T ss_pred C
Confidence 4
No 301
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.25 E-value=0.18 Score=55.50 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=49.9
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHcCceecCCCcCCHHhhhccCCe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks----~~~A~~~G~~~~d~t~~~~~Eav~~ADI 181 (582)
..+.+ ++|+|+|+|.-|.++|+-|++. |+.|.+.++..... .+...+.|+....+ ....+.+.+.|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 66778 9999999999999999999999 99887766543211 13355668754110 122355678999
Q ss_pred EEEe
Q 007987 182 VLLL 185 (582)
Q Consensus 182 VILa 185 (582)
||+.
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9885
No 302
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.20 E-value=0.66 Score=44.35 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.6
Q ss_pred cCCCEEEEEc--cchhHHHHHHHHHHhhhhhcCCceEEEEecCC----c--ccH----HHHHHcCc--eecCCCcCCHHh
Q 007987 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (582)
Q Consensus 109 ~gikkIgIIG--~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~----s--ks~----~~A~~~G~--~~~d~t~~~~~E 174 (582)
+| +||++|| .+++..|++..+... |.++.+....+ . .-. +.+.+.|. .. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999988 98866655443 1 112 22333453 32 468999
Q ss_pred hhccCCeEEEeccc
Q 007987 175 TISGSDLVLLLISD 188 (582)
Q Consensus 175 av~~ADIVILaVPd 188 (582)
+++++|+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999886655
No 303
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.20 E-value=0.25 Score=49.57 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHh
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds 133 (582)
.+.|+. ++|.|||+|..|..++++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
No 304
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.17 E-value=0.23 Score=45.46 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r 148 (582)
++|.|||+|..|..++.+|..+ |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999998 77 5555553
No 305
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.14 E-value=0.24 Score=53.89 Aligned_cols=72 Identities=24% Similarity=0.198 Sum_probs=49.0
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----HHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~----~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
+++ |+|.|||.|.+|.++|..|.+. |.+|++.++.....+ +...+.|....- .....+...+.|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999887766532222 222334554210 112234557799999
Q ss_pred Eeccc
Q 007987 184 LLISD 188 (582)
Q Consensus 184 LaVPd 188 (582)
+++-.
T Consensus 74 ~~~g~ 78 (450)
T PRK14106 74 VSPGV 78 (450)
T ss_pred ECCCC
Confidence 97653
No 306
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.14 E-value=0.3 Score=52.61 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceE-EEEecCCcccHHHHHHcCceecCCCcCCHHhhhccC--CeEEEeccc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~V-iVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~A--DIVILaVPd 188 (582)
-++||+|+|.|++=.+++|.-. +++ ++.| -|..++-+++.+.|+..++. .-....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s--~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PES--NHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-ccc--CcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4689999999999999998765 222 5543 23444455666778888882 123367899999877 999999999
Q ss_pred hhHHHHHHHHHh
Q 007987 189 AAQADNYEKIFS 200 (582)
Q Consensus 189 ~a~~~Vl~eI~~ 200 (582)
.++.++.-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999887765544
No 307
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.06 E-value=0.41 Score=47.33 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=30.6
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~ 147 (582)
..+.|+. ++|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 15 ~Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 15 AQKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 4577888 9999999999999999999998 77 344444
No 308
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.05 E-value=0.8 Score=48.01 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHHh--hhccCCeEEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~--~sks~~~A~~~G~~~~d~t~~~~~E--av~~ADIVIL 184 (582)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++..+.+++.|....+..-.+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 67 8999999999999999999988 8877666553 3455778888887531110011111 1235799999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
++.... .+.+....++++..++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 997432 445555667776655433
No 309
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.02 E-value=0.45 Score=46.99 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.1
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~ 147 (582)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 567788 9999999999999999999998 77 444444
No 310
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.99 E-value=0.3 Score=51.39 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIsA 208 (282)
T PRK14180 155 KTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIVA 208 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEEc
Confidence 5889 999999976 7899999999887 7777665321 13456778999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++++|++|+++.
T Consensus 209 vGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 209 VGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred cCCcCc---CC--HHHcCCCcEEEEec
Confidence 985443 32 24578999988764
No 311
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.96 E-value=0.3 Score=52.05 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=39.7
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcccHHHHHHcCceecCCC---------cCCHHhh
Q 007987 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEENGT---------LGDIYET 175 (582)
Q Consensus 113 kIgIIG~-GsmG~AiA~nLrds~~~~g~G~-------~ViVg~r~~sks~~~A~~~G~~~~d~t---------~~~~~Ea 175 (582)
+|+|||+ |.+|.+++..|... ++ ++++.+........++...-+. |.. ..+..+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~--d~~~~~~~~~~~~~~~~~~ 72 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELM--DCAFPLLDGVVPTHDPAVA 72 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehh--cccchhcCceeccCChHHH
Confidence 5899999 99999999999875 43 3555554322111111111111 000 1244578
Q ss_pred hccCCeEEEecc
Q 007987 176 ISGSDLVLLLIS 187 (582)
Q Consensus 176 v~~ADIVILaVP 187 (582)
+++||+||++.-
T Consensus 73 ~~~aDiVVitAG 84 (324)
T TIGR01758 73 FTDVDVAILVGA 84 (324)
T ss_pred hCCCCEEEEcCC
Confidence 899999999653
No 312
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.96 E-value=0.55 Score=50.34 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccHH---HHH
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EAR 158 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~---------------------sks~~---~A~ 158 (582)
..+.|+. .+|.|||+|.+|..+|.+|..+ |+ ++.+.++.. .+... ...
T Consensus 18 ~Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~ 90 (339)
T PRK07688 18 GQQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE 90 (339)
T ss_pred HHHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH
Confidence 3567788 9999999999999999999988 77 565555431 11111 111
Q ss_pred Hc--Ccee--c--CCCcCCHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 159 AA--GFTE--E--NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 159 ~~--G~~~--~--d~t~~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
+. .+.. . +-+..+..+.++++|+||.++-......++.++.
T Consensus 91 ~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 91 EINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 11 1110 0 1011234567889999999988777666666654
No 313
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.95 E-value=0.3 Score=51.45 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=56.8
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+... + ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs---~----------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHS---K----------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999887 777766532 1 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-.. .+. ..++|+|++|+++.
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98432 232 34678999888764
No 314
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=92.93 E-value=0.28 Score=51.50 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=57.7
Q ss_pred ccccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-.|.| +++.|||-+ ..|..+++-|... +..|.+.... ..+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 35789 999999988 5799999999987 8877765432 1345677899999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++--... +. .+.+|+|++|+++.
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9874333 22 56788999888774
No 315
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.86 E-value=0.69 Score=49.14 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=42.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecC--CcccHHHHHHcC-ceecCCC-c-CCHHhhhccCCeEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENGT-L-GDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~--~sks~~~A~~~G-~~~~d~t-~-~~~~Eav~~ADIVI 183 (582)
+||+|||. |++|.++|..|... ++ ++++.+.+ .....+...... ... .+. . .++.+.+++||+||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i-~~~~~~~~~y~~~~daDivv 73 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKV-TGYLGPEELKKALKGADVVV 73 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceE-EEecCCCchHHhcCCCCEEE
Confidence 58999999 99999999999877 65 45444433 122233332211 111 000 1 22357889999999
Q ss_pred Eecc
Q 007987 184 LLIS 187 (582)
Q Consensus 184 LaVP 187 (582)
++.-
T Consensus 74 itaG 77 (310)
T cd01337 74 IPAG 77 (310)
T ss_pred EeCC
Confidence 9653
No 316
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.85 E-value=0.28 Score=53.95 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=51.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhh---h-hhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~---~-~~g~G~~Vi-Vg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVIL 184 (582)
.+|||||+|.+|..++..|.+.. . ..|.++++. |.+++..+ .......+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 57999999999999998886541 1 123344443 23333211 1100001111 1457888885 4699999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEE
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
+++..... .+-+...|+.|+-|+.
T Consensus 79 ~tg~~~~~--~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPA--RELILKALEAGKHVVT 102 (426)
T ss_pred CCCCchHH--HHHHHHHHHCCCeEEE
Confidence 98763221 2233455667776543
No 317
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.83 E-value=0.32 Score=53.63 Aligned_cols=69 Identities=28% Similarity=0.187 Sum_probs=47.9
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
+++ ++|.|||.|..|.+.|..|++. |.+|.+.++.+. ...+..++.|+... ..+..+....+|+||
T Consensus 14 ~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~Vv 83 (480)
T PRK01438 14 WQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLVV 83 (480)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEEE
Confidence 567 8999999999999999999998 998877664432 11234556687641 111112345689999
Q ss_pred Eec
Q 007987 184 LLI 186 (582)
Q Consensus 184 LaV 186 (582)
+++
T Consensus 84 ~s~ 86 (480)
T PRK01438 84 TSP 86 (480)
T ss_pred ECC
Confidence 876
No 318
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.81 E-value=0.32 Score=51.12 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=56.8
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999887 7777655321 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++|+|++|+++.
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEec
Confidence 985433 22 34578999888764
No 319
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.78 E-value=0.3 Score=51.37 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=56.4
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. +..|.+... + ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs---~----------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHS---R----------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999977 7899999999887 777766432 1 13466788999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-.. ++. ..++|+|++|+++.
T Consensus 208 vGk~~---~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 208 IGKAE---LVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEee
Confidence 98422 333 34578999988764
No 320
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.76 E-value=0.52 Score=50.30 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=57.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCceecCCCcC-CHH----hhh--ccCCeEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~-~G~~~~d~t~~-~~~----Eav--~~ADIVI 183 (582)
.++.|+|+|.+|.-.++.++.. |...++..+.++...+.|++ .|......... +.. +.. ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888877 76444444555566888888 45432100001 111 222 2489999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
-++- ....+.+....++++-.|++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 333566666677776655433
No 321
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.70 E-value=0.33 Score=51.28 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=56.6
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999977 7899999999887 7777665321 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+.-... +. ..++|+|++|+++
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985433 22 3457899988876
No 322
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=92.66 E-value=0.7 Score=43.23 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=52.3
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhh--hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007987 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER--ILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 338 (582)
Q Consensus 263 iAv~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEq--vLsG~~pAlieAl~d~lVe~Gl~pe~Ay~~~~ 338 (582)
|+++. ++++++.+..++..+|.. .....+..--+||.. +.|+++.+++....+.+.++|++++.|++.-.
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~----~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~ 75 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR----PFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL 75 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE----EEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc----eEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 45565 788999999999999985 122233344489988 57999999999999999999999999886533
No 323
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.58 E-value=0.24 Score=56.12 Aligned_cols=75 Identities=25% Similarity=0.186 Sum_probs=48.7
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh-hccCCeEEEec
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea-v~~ADIVILaV 186 (582)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|+.++..+.+...+... -...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEecc
Confidence 667 8999999999999999999998 8888887776444444444433211 001122221 23467777777
Q ss_pred cchhH
Q 007987 187 SDAAQ 191 (582)
Q Consensus 187 Pd~a~ 191 (582)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 76543
No 324
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.58 E-value=0.69 Score=51.86 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=66.6
Q ss_pred cccCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-----cee-------
Q 007987 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------- 164 (582)
Q Consensus 107 ~l~gikkIgIIG~----------GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G-----~~~------- 164 (582)
.++| ++|+|+|+ .+-...++..|.+. |.+|.+++..-.. .+.....+ +..
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4788 99999998 56777888888887 9988777654211 11111121 100
Q ss_pred ------cCCCcCCHHhhhccCCeEEEeccchhHHHH-HHHHHhcCCCCcEEEEecCc
Q 007987 165 ------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 165 ------~d~t~~~~~Eav~~ADIVILaVPd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (582)
.-..+.+..+++++||+||++|.-....++ ++++.+.|++..+|++.-+.
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 001134567899999999999998887653 56777777765577887665
No 325
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=92.58 E-value=0.34 Score=52.84 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecC-CCcCCHH-hhhccCCeEEEec
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s--ks~~~A~~~G~~~~d-~t~~~~~-Eav~~ADIVILaV 186 (582)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999995 89999999887765 1446544443221 1111110 0000000 0011222 2257899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|.....++.+.+ +.|..|++.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 997666666553 457777777654
No 326
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.50 E-value=0.54 Score=49.94 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=41.4
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHHHcC-ceecCCCc-C-CHHhhhccCCeEEE
Q 007987 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTL-G-DIYETISGSDLVLL 184 (582)
Q Consensus 113 kIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~--sks~~~A~~~G-~~~~d~t~-~-~~~Eav~~ADIVIL 184 (582)
||+|||+ |.+|.++|..|... ++ ++++.+... ....+...... ... -+.. . +..+++++||+||+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i-~~~~~~~~~~~~~~daDivvi 73 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASV-KGFSGEEGLENALKGADVVVI 73 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceE-EEecCCCchHHHcCCCCEEEE
Confidence 6999999 99999999999876 55 555555432 12223222111 111 0000 1 23578999999999
Q ss_pred ecc
Q 007987 185 LIS 187 (582)
Q Consensus 185 aVP 187 (582)
+.-
T Consensus 74 taG 76 (312)
T TIGR01772 74 PAG 76 (312)
T ss_pred eCC
Confidence 764
No 327
>PRK15076 alpha-galactosidase; Provisional
Probab=92.49 E-value=0.24 Score=54.70 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHH--------HHcCc--eecCCCcCCHHhhhcc
Q 007987 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGF--TEENGTLGDIYETISG 178 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~--nLrds~~~~g~G~~ViVg~r~~sks~~~A--------~~~G~--~~~d~t~~~~~Eav~~ 178 (582)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+... ...+.+ ...+. .. ....|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid~-er~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDIDP-ERLEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCCH-HHHHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 479999999999977665 55421 011144666655443 222211 11221 11 113566899999
Q ss_pred CCeEEEeccch
Q 007987 179 SDLVLLLISDA 189 (582)
Q Consensus 179 ADIVILaVPd~ 189 (582)
||+||.++-..
T Consensus 76 ADfVv~ti~vg 86 (431)
T PRK15076 76 ADYVINAIQVG 86 (431)
T ss_pred CCEEeEeeeeC
Confidence 99999987653
No 328
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.47 E-value=0.85 Score=46.45 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=60.7
Q ss_pred eeeeccccccccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcC
Q 007987 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLG 170 (582)
Q Consensus 92 ~i~~~~r~~f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~-~~A~~~G~~~~d~t~~ 170 (582)
.|+......|| ..-.++| ++|.|||.|.+|..=+..|.+. |.+|.|.-..-.+.. +.+....+..... ..
T Consensus 8 ~~~~~~~~~~p-i~l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r-~~ 78 (223)
T PRK05562 8 DIYNEENKYMF-ISLLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKG-NY 78 (223)
T ss_pred HHhhccCCEee-eEEECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeC-CC
Confidence 34443334455 2345568 8999999999999989999988 887776654432223 3333222332111 12
Q ss_pred CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 171 ~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
+.. -+..+++||.||.|...-+-+.+..
T Consensus 79 ~~~-dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DKE-FIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred ChH-HhCCCcEEEECCCCHHHHHHHHHHH
Confidence 333 3578999999999987765444443
No 329
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.47 E-value=0.37 Score=50.69 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=56.0
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHH--hhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrd--s~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
.++| |++.|||-+ ..|..++.-|.. . +..|.+.... ..++.+.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 4789 999999966 889999999976 5 6666665321 135678899999999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
.++.-... +. ..++|+|++|+++.
T Consensus 209 ~AvGkp~~---i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 209 AAAGVAHL---VT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 99985432 32 34678999888764
No 330
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.42 E-value=0.39 Score=51.09 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=39.9
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccH----HHHHHc-----CceecCCCcCCHH
Q 007987 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (582)
Q Consensus 113 kIgIIG~-GsmG~AiA~nLrds~~~~g~G~-------~ViVg~r~~--sks~----~~A~~~-----G~~~~d~t~~~~~ 173 (582)
||+|||+ |.+|.+++..|... |+ ++++.+... +... +..... +... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355555443 2111 111110 1111 13456
Q ss_pred hhhccCCeEEEec
Q 007987 174 ETISGSDLVLLLI 186 (582)
Q Consensus 174 Eav~~ADIVILaV 186 (582)
+++++||+||++.
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999864
No 331
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.41 E-value=0.35 Score=51.12 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=54.6
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+.+.. .+..|.+.... ..++++.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 156 ETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4789 999999976 7899999998762100 05566554321 13467889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++-. .++. ..++|+|++|++++
T Consensus 214 vg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 214 IGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred cCcc---CccC--HHHcCCCCEEEEee
Confidence 9644 2333 23458999988764
No 332
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.31 E-value=0.35 Score=52.52 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=56.5
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. +..|.+... + ..++.+.+++||+||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs---~----------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHS---R----------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999966 7899999999887 777766532 1 23567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ...+|+|++|+++.
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEecc
Confidence 985433 22 34578999888753
No 333
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.23 E-value=0.37 Score=51.94 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=56.2
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999976 7899999999877 7777655321 12456789999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ...+|+|++|+++.
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEcc
Confidence 985433 22 34578999988764
No 334
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.23 E-value=0.57 Score=47.83 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.5
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHh
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds 133 (582)
..+.|+. ++|.|||+|..|..++++|...
T Consensus 26 ~Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 26 GQEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 3577888 9999999999999999999988
No 335
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.22 E-value=0.69 Score=49.29 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
.||+||| -|-.|.-+.+-|.+. ..+++. .....+. +. ..+.+++++++|+||+++|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPDRR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEecccc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 688888888888764 133442 2322111 22 2345667788999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeeccCCC
Q 007987 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~t 270 (582)
..++.+.+. ..|..|++.+|-- .+.+ +++-+.|--... .|+..++ ... |+ .+.+.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf---------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY---------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH---------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 877777653 3688888887641 1212 566666744332 2333332 222 33 44445
Q ss_pred HHHHHHHHHHHHHhCC
Q 007987 271 GRATNVALGWSVALGS 286 (582)
Q Consensus 271 geale~alala~aiG~ 286 (582)
.-+.-++++=+...|.
T Consensus 117 aTa~~LaL~PL~~~~l 132 (310)
T TIGR01851 117 PTGFIALMRPLVEAGI 132 (310)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5555555555555554
No 336
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.16 E-value=1.1 Score=41.34 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.3
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~ 147 (582)
+|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 77 454444
No 337
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.16 E-value=0.95 Score=46.00 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=56.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcC--CHHhhh------ccC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLG--DIYETI------SGS 179 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~-ViVg~r~~sks~~~A~~~G~~~~d~t~~--~~~Eav------~~A 179 (582)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+.+..+.+++.|+.. .+. +..+.+ ...
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATA---LAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcE---ecCchhhHHHHHHHhCCCCC
Confidence 57 8999999999999999999888 886 5444 44445578888888742 111 111111 247
Q ss_pred CeEEEeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
|+||-++.... .+++....++++..++..
T Consensus 189 d~vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 88888875422 344444556665554433
No 338
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.16 E-value=0.35 Score=53.05 Aligned_cols=66 Identities=29% Similarity=0.280 Sum_probs=45.8
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++.... .....+.|+.. . ..+ .+.+.+.|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~-~--~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITT-A--DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCccc-c--CCC-hhHHcCCCEEEE
Confidence 3678 8999999999999999999998 9988766543222 22344567763 1 112 234568999886
No 339
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.08 E-value=0.6 Score=46.74 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=30.9
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r 148 (582)
..+.|+. .+|.|||+|.+|..++++|... |+ ++++.+.
T Consensus 22 ~q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 22 LLEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 3577888 9999999999999999999988 76 3544443
No 340
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.98 E-value=0.89 Score=45.76 Aligned_cols=81 Identities=17% Similarity=0.036 Sum_probs=55.0
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~-sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-.|+| ++|.|||-|..|..=++.|.+. |-+|+|....- ++....+.+.++..-+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 45789 9999999999999999999988 88877765543 2323333344422111 123444444 4999999
Q ss_pred eccchhHHHHH
Q 007987 185 LISDAAQADNY 195 (582)
Q Consensus 185 aVPd~a~~~Vl 195 (582)
+|+|....+-+
T Consensus 79 At~d~~ln~~i 89 (210)
T COG1648 79 ATDDEELNERI 89 (210)
T ss_pred eCCCHHHHHHH
Confidence 99998775533
No 341
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.94 E-value=0.78 Score=48.92 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=53.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
.+|+||| .|..|..+.+-|... ..+++. .....+.. . ..+.++..+++|+||+|+|...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-----p~~~l~-~~~s~~~~------~--------~~~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-----SDIELL-SIPEAKRK------D--------AAARRELLNAADVAILCLPDDA 62 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-----CCeEEE-EEecCCCC------c--------ccCchhhhcCCCEEEECCCHHH
Confidence 6899999 799999999988765 023432 22221111 1 1122345678999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCc
Q 007987 191 QADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..++.+++.. .|..|++.++-
T Consensus 63 s~~~~~~~~~---~g~~VIDlSad 83 (313)
T PRK11863 63 AREAVALIDN---PATRVIDASTA 83 (313)
T ss_pred HHHHHHHHHh---CCCEEEECChh
Confidence 8887777643 58888877764
No 342
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.94 E-value=0.51 Score=52.66 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=49.8
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++.. ...+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~-~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDP-DALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 99887765432 234445666875311 11234556789998885
Q ss_pred c
Q 007987 186 I 186 (582)
Q Consensus 186 V 186 (582)
.
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 343
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.88 E-value=0.78 Score=47.44 Aligned_cols=87 Identities=9% Similarity=-0.008 Sum_probs=55.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd 188 (582)
+| +++.|+|.|.+|...++-++.. |.++++..+......+.|.+.++. ...++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i------~~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVL------DPEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhcccc------ChhhccCCCCCEEEECCCC
Confidence 56 7899999999999999988887 887555555444445556554432 1111122357999999986
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 007987 189 AAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
.. .++...+.++++-.+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566666655433
No 344
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=91.85 E-value=0.38 Score=50.08 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=48.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccchh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~a 190 (582)
+++.|||.|-.++|++-.|.+. |. +|.|.+|+.++..+.+...+.. ..+ .-....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 87 5888888766665666554432 111 001245899999999654
No 345
>PRK08328 hypothetical protein; Provisional
Probab=91.84 E-value=0.85 Score=46.13 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.0
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHh
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds 133 (582)
.+.|++ .+|.|||+|..|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999988
No 346
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.77 E-value=0.54 Score=50.42 Aligned_cols=87 Identities=23% Similarity=0.189 Sum_probs=52.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc---ccHHHHHHcC--ceecCCCcCCHHhhhccCCeEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~s---ks~~~A~~~G--~~~~d~t~~~~~Eav~~ADIVI 183 (582)
.+|+|||. |..|..+.+-|.++ ++ ..+....+.. +... -.| +... -.+..+ ++++|+||
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~~~l~~~---~~~~~~-~~~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAGKNLRVR---EVDSFD-FSQVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCCcceEEe---eCChHH-hcCCCEEE
Confidence 68999995 99999999999865 43 1122333211 1111 111 1110 112233 47899999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
+++|.....++.+++.. .|..|++.+|-
T Consensus 72 la~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 72 FAAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred EcCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 99997766665555433 57778877764
No 347
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=91.70 E-value=3.3 Score=44.88 Aligned_cols=165 Identities=11% Similarity=0.111 Sum_probs=91.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHH-hhhhhcCCce---EEEEec--CCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGLR--KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrd-s~~~~g~G~~---ViVg~r--~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.+|||||+ |..|..+.+-|.+ . .++ +..... ...+......+ ..... -.+.+ ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999996 9999999998874 4 443 322222 22222211111 11210 12333 3478999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliA 264 (582)
++|.....++..+.. +.|..|++.++.- ...++++ .+.|--.....+ + -.| +|+
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~f---------R~~~~vp--lvvPEvN~e~i~----~-----~~~---iIa 128 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSEY---------RMAHDVP--LVVPEVNAHTLK----E-----HKG---IIA 128 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchhh---------cCCCCCC--eEeCCcCHHHHh----c-----cCC---EEE
Confidence 999987777776643 3688888887642 1223444 344533222221 1 013 234
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHH
Q 007987 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFT 324 (582)
Q Consensus 265 v~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lV 324 (582)
+++++.-++-+++.=+...+.. +..-.+.|. .+||.+...++.+.+...
T Consensus 129 -nPnC~tt~~~laL~PL~~~~~i--------~~v~V~t~q--avSGAG~~gv~eL~~qt~ 177 (347)
T PRK06728 129 -VPNCSALQMVTALQPIRKVFGL--------ERIIVSTYQ--AVSGSGIHAIQELKEQAK 177 (347)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCc--------cEEEEEEee--cccccchhhHHHHHHHHH
Confidence 5556666666665544444432 112222333 589998888887776654
No 348
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=91.68 E-value=0.33 Score=52.49 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=49.9
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce---e-cCC-C---------c--CCHH-
Q 007987 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (582)
Q Consensus 112 kkIgIIG~GsmG~Ai-A~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~---~-~d~-t---------~--~~~~- 173 (582)
|||.++|.|++|+++ +.-|.++ |++|+..+. ++...+.-.+.|.- . .++ . + .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~-~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDV-NQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEEC-CHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 579999999999977 5555556 787755543 33344555555641 1 011 0 0 0112
Q ss_pred --hhhccCCeEEEeccchhHHHHHHHHHhcC
Q 007987 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (582)
Q Consensus 174 --Eav~~ADIVILaVPd~a~~~Vl~eI~~~L 202 (582)
+.+.++|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 23447788888888776666665555544
No 349
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.65 E-value=0.91 Score=49.04 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=53.6
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC-------------------CcccHHHHHHc----
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~-------------------~sks~~~A~~~---- 160 (582)
.+.|++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 456788 9999999999999999999988 76 45555443 11211111111
Q ss_pred -Cceec--CCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 161 -G~~~~--d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
.+.+. ..... +..+.+++.|+||.++-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 11111 23456788999999987665555555543
No 350
>PRK05086 malate dehydrogenase; Provisional
Probab=91.61 E-value=1.3 Score=46.82 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=41.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHc-CceecCC-CcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENG-TLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks----~~~A~~~-G~~~~d~-t~~~~~Eav~~ADIVIL 184 (582)
+||+|||. |.+|.+++..|...+ +.+.++.+.+++ +.. .+..... -... .+ ...++.+.++++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i-~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKI-KGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceE-EEeCCCCHHHHcCCCCEEEE
Confidence 68999999 999999999885521 113355555543 222 2221100 0111 00 01355678899999999
Q ss_pred ecc
Q 007987 185 LIS 187 (582)
Q Consensus 185 aVP 187 (582)
+.-
T Consensus 76 taG 78 (312)
T PRK05086 76 SAG 78 (312)
T ss_pred cCC
Confidence 775
No 351
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.60 E-value=2.4 Score=46.31 Aligned_cols=169 Identities=16% Similarity=0.229 Sum_probs=91.1
Q ss_pred CCEEEEEcc-chhHHHHHH-HHHHhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCC--HHhhhccCCeEE
Q 007987 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVL 183 (582)
Q Consensus 111 ikkIgIIG~-GsmG~AiA~-nLrds~~~~g~G~~---ViVg~r~~sks~~~A~~~G~~~~d~t~~~--~~Eav~~ADIVI 183 (582)
|.+|||||+ |..|.-+.+ -|.+. .+. +.. ..+. ++-..- ..|.-....+.+ ..+.++++|+||
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~--~~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAA--PSFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcc--cccCCCcceEEecCChhHhcCCCEEE
Confidence 468999996 999999997 55555 453 433 2221 111100 011100001111 123457899999
Q ss_pred EeccchhHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceE
Q 007987 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~a 261 (582)
+++|.....++..++.. .| .+|++.++.- ...+ +|..+-|--.....+..-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f---------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAASTL---------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChHH---------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99998877777776543 57 5677777642 1112 4555567554444332101 24333
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCC-ccccccccccccccchhhhhhhchHHHHHHHHHHHH
Q 007987 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRF 323 (582)
Q Consensus 262 liAv~qd~tgeale~alala~aiG~~-~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~l 323 (582)
|+ +++++.-+.-+++.=+...|.. +++-+| |. .+||++...++.+.+..
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVst---------~q--avSGAG~~g~~eL~~qt 179 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVMT---------YQ--AASGAGARNMRELLTQM 179 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEEe---------ee--cccccCHHHHHHHHHHH
Confidence 33 5555655666666555555543 222222 33 58888877776666543
No 352
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.55 E-value=0.54 Score=49.73 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G----~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADI 181 (582)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+... + ..++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs---~----------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHS---R----------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecC---C----------------CCCHHHHHhhCCE
Confidence 4889 999999977 7899999999865 4 35555432 1 1356788899999
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
||.++.-... +. ...+|+|++|+++.
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9999985443 32 35678999988764
No 353
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=91.52 E-value=0.53 Score=49.78 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=52.0
Q ss_pred cccCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCCCcCCHHhhhccC
Q 007987 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (582)
Q Consensus 107 ~l~gikkIgIIG~G---smG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~~A~~~G~~~~d~t~~~~~Eav~~A 179 (582)
.++| .||++||-| ++..+++..+... |+++.+....+- .-.+.+++.|.... ...++++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999985 9999999999887 988877655421 22355666665421 146899999999
Q ss_pred CeEEEe
Q 007987 180 DLVLLL 185 (582)
Q Consensus 180 DIVILa 185 (582)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 998874
No 354
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.50 E-value=0.91 Score=43.96 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.6
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r 148 (582)
+|+|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 76 3555444
No 355
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.44 E-value=0.59 Score=50.82 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.6
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc---ccHHHHHHcCceecCCCcCCHHhhhcc-CCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s---ks~~~A~~~G~~~~d~t~~~~~Eav~~-ADIVI 183 (582)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 467 9999999999999999999999 998877664322 1223344557653100 123344444 89888
Q ss_pred Eec
Q 007987 184 LLI 186 (582)
Q Consensus 184 LaV 186 (582)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 744
No 356
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.43 E-value=1.3 Score=46.34 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHHhhhc---cCCeEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Eav~---~ADIVI 183 (582)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ .+..+.+++.|.... +..-.+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999988887 87 45544444 455788888887420 100112233222 279999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
-++.... .++.....+++|-.++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9887532 344444566676655443
No 357
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=91.42 E-value=0.62 Score=50.09 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=54.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEE-E-ecCCcccHHHHHHcCceecCCCcCCH-HhhhccCCeEEE
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~---~ViV-g-~r~~sks~~~A~~~G~~~~d~t~~~~-~Eav~~ADIVIL 184 (582)
.+|+||| .|..|..+.+-|.++ ++ ++.. . .+...+.... .|... .+.+. .+.+.++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 6899999 688999998888775 44 3221 1 2222222221 12111 02111 245588999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
++|.....++.++.. +.|..|++.++.
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999987777777543 368888888764
No 358
>PLN00106 malate dehydrogenase
Probab=91.33 E-value=0.47 Score=50.67 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc--ccHHHHHHcCc-eecC-CCcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~s--ks~~~A~~~G~-~~~d-~t~~~~~Eav~~ADIVIL 184 (582)
.||+|||. |.+|.++|..|... ++ ++++.+.... ...+....... ...+ ....+..++++++|+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 54 5555554331 11222111111 1101 012345788999999999
Q ss_pred ecc
Q 007987 185 LIS 187 (582)
Q Consensus 185 aVP 187 (582)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 653
No 359
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=91.24 E-value=0.99 Score=47.88 Aligned_cols=116 Identities=9% Similarity=0.132 Sum_probs=78.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhcc--CCeEEEeccc
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~--ADIVILaVPd 188 (582)
.+|.|.| .|.-|..+-..++.. |-+++.|..... .. .+-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~-~~--~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKK-GG--TEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCC-CC--ceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 799999999999988 888888876542 00 12257764 5688887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhccccc--CCCCCcEEEeccCCChhh
Q 007987 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD--FPKNIGVIAVCPKGMGPS 243 (582)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~--~p~dv~VI~v~Pngpg~~ 243 (582)
....+.+++.... .-..+|++++||.-.-.++.... -..+++++ =||+.|..
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi--GPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI--GPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE--CCCCceee
Confidence 9999988875541 22347889999963321110001 11234444 38887665
No 360
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.01 E-value=1.8 Score=38.60 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=47.7
Q ss_pred ccchhHHHHHHHHHHhhhhhcCCceEEE-EecC--CcccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEEeccchhHH
Q 007987 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (582)
Q Consensus 118 G~GsmG~AiA~nLrds~~~~g~G~~ViV-g~r~--~sks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVILaVPd~a~~ 192 (582)
|+|.+|.+++..|...-.. .+++++. ..++ -...+......... ..+.++++. +.|+||=+++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 2344433 2333 11222222222222 578888888 899999999988877
Q ss_pred HHHHHHHhcCCCCcEEE
Q 007987 193 DNYEKIFSCMKPNSILG 209 (582)
Q Consensus 193 ~Vl~eI~~~Lk~GaiL~ 209 (582)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 766654 34566544
No 361
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=91.00 E-value=1.1 Score=46.79 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=88.2
Q ss_pred CCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccH----HHH---HHcCceecCCCcCCHHhhhccCCe
Q 007987 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (582)
Q Consensus 111 ikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~-sks~----~~A---~~~G~~~~d~t~~~~~Eav~~ADI 181 (582)
+.||+|+|+ |.||+.+.+.+... .++++..+.... +.+. ..+ ...|+.. ..+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 378999998 99999999999876 146655554432 2211 111 1223332 2345667788999
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhH--HHHHhhcccccC-CC
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~v--R~ly~~G~e~~G-~G 258 (582)
+|=-+-|....+.++....+ +-.+|+=.-||+-..++. .-...+.+++| ++||.+--+. -.+-++-....+ .-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~--~~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEH--GKPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHc--CCCeEEECCCCCHHHHHH-HHHHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 99999888877777654332 122566677886332221 01123446666 7888765441 111111000111 11
Q ss_pred ceEEEeecc-----CCCHHHHHHHHHHHHHhC
Q 007987 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (582)
Q Consensus 259 v~aliAv~q-----d~tgeale~alala~aiG 285 (582)
+-- |-.|. -+||.|+.+++.++++.|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 222 22222 356777777777777777
No 362
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.90 E-value=1.3 Score=46.25 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=59.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH-HhhhccCCeEEEecc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~-~Eav~~ADIVILaVP 187 (582)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ .+..+.+++.|+.. +.+. .+.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999988888877 8877655554 44578999999753 2221 111234688887766
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 007987 188 DAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
.. ..+....+.++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666677777665443
No 363
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.87 E-value=0.38 Score=51.49 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=44.7
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~ 164 (582)
.-+| .+++|+|+|..|.|.+++.|.. |..-|+|.+-++...++|++.|++.
T Consensus 190 v~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 190 VEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred cCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 3467 8999999999999999999998 8766789888888899999999984
No 364
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.86 E-value=0.64 Score=51.74 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.5
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHc--CceecCCCcC-CHHhhhccCCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s-ks~~~A~~~--G~~~~d~t~~-~~~Eav~~ADIVI 183 (582)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 457 8999999999999999999998 998876554322 222333344 43321 12 2345667899999
Q ss_pred Ee--ccc
Q 007987 184 LL--ISD 188 (582)
Q Consensus 184 La--VPd 188 (582)
.. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 85 555
No 365
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.84 E-value=0.83 Score=46.60 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=53.7
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccH---HHHHHc
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA 160 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~-------------------sks~---~~A~~~ 160 (582)
..+.|++ .+|.|||+|-+|..++.+|..+ |+ ++++.++.. .|.. +...+.
T Consensus 18 ~q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i 90 (240)
T TIGR02355 18 GQEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI 90 (240)
T ss_pred HHHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH
Confidence 3577888 9999999999999999999988 66 344433221 0111 111111
Q ss_pred --Ccee--cCCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 161 --GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 161 --G~~~--~d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
.+.+ .+..+. +..+.++++|+||.++-.......+.+..
T Consensus 91 np~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 91 NPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 1111 011121 24467889999999987766655666543
No 366
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=90.81 E-value=0.95 Score=48.28 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=54.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCC-cccHHHHHHcCc------e--ecCCCcCC-HHhhhccC
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKG-SRSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~-sks~~~A~~~G~------~--~~d~t~~~-~~Eav~~A 179 (582)
++|+|||+ |-||..+++.|... . ++++...+.. +..........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 47999995 89999999987665 3 4554432322 111111111111 0 00000111 12345789
Q ss_pred CeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988877765533 57777777664
No 367
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.77 E-value=1.2 Score=48.75 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=55.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHh----hhccCCeEEEecc
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~E----av~~ADIVILaVP 187 (582)
..|-|+|+|.+|..+++.|++. |.++++.+.+ + .+.....|...-.|...+.+. -+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8777665543 1 233343443221222333221 3568999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 007987 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (582)
++...-..-.....+.|+ +++..+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876644332223334443 455544
No 368
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.72 E-value=0.8 Score=48.78 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=54.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCc--ccHHHHHHcCceecCCCcCCHH-hhhccCCeEEE
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~---~ViVg~r~~s--ks~~~A~~~G~~~~d~t~~~~~-Eav~~ADIVIL 184 (582)
++|+||| .|..|..+.+-|.+. |+ ++....+..+ +... -.|... .+.+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7899999 689999999988876 54 3333333221 2111 112111 022221 33478999999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
++|.....++.+.+. +.|..|++.++-
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCch
Confidence 999887777776643 467777776653
No 369
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=90.68 E-value=0.81 Score=48.62 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=56.8
Q ss_pred ccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHH----HHcC--ceecCCCcCCHHhhh
Q 007987 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYETI 176 (582)
Q Consensus 108 l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~A----~~~G--~~~~d~t~~~~~Eav 176 (582)
|+| +||++||=| ||+.++......- |+++.+.-..+ +.-.+.| .+.| +.. ..|+.+++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999966 8888888877766 99888876542 2333333 4445 443 46899999
Q ss_pred ccCCeEEEeccchhH--HHHHHHHHhcCC
Q 007987 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (582)
Q Consensus 177 ~~ADIVILaVPd~a~--~~Vl~eI~~~Lk 203 (582)
++||+|.-=|....- .+.+++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999876654322 223444444444
No 370
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=90.63 E-value=0.86 Score=45.66 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=60.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HHhhhccCCeEEEecc
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~---~~Eav~~ADIVILaVP 187 (582)
|||+||| -|..|..+++-..+. |++|....|+.++.... .|.......+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6899999 699999999999999 99988777875543221 333221222333 3356778899999764
Q ss_pred ch------hHHHHHHHHHhcCCC-Cc-EEEEecCch
Q 007987 188 DA------AQADNYEKIFSCMKP-NS-ILGLSHGFL 215 (582)
Q Consensus 188 d~------a~~~Vl~eI~~~Lk~-Ga-iL~~a~G~~ 215 (582)
.. .+.+..+.+...++. |. -+.++.|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 223333345555554 44 256666653
No 371
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=90.51 E-value=0.38 Score=45.63 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=51.0
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.+..+| ++|++||+ +.+ ++..|+.. +.++.|.+++... ... ...++. ....++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEE
Confidence 356678 99999997 333 66777765 7788888776322 111 112232 3567889999999987
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
.-. ...-..+++|..+.++++.+++.
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEE
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEE
Confidence 432 12223445555555555554433
No 372
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.46 E-value=1 Score=47.32 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEeccch
Q 007987 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (582)
Q Consensus 110 gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaVPd~ 189 (582)
| ++|+|||--.=-..+++.|.+. |++|.+..-++.. . ...|+.. +.+.+++++++|+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888888899999988 9988774322211 1 2347764 456788999999999998863
Q ss_pred hH----HH-------HH-HHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEecc
Q 007987 190 AQ----AD-------NY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCP 237 (582)
Q Consensus 190 a~----~~-------Vl-~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~P 237 (582)
.- .. .+ .+....|++|+++.. |+...++.+ ..-..++.++-.+|
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~--G~~~~~~~~--~~~~~gi~~~~~~~ 122 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIFS--GIANPYLKE--LAKETNRKLVELFE 122 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEEE--ecCCHHHHH--HHHHCCCeEEEEec
Confidence 11 11 12 356777888875442 432222211 01134666665555
No 373
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=90.32 E-value=1.2 Score=46.86 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=47.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---------cCceecCCCcCCHHhhhccCCeE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~---------~G~~~~d~t~~~~~Eav~~ADIV 182 (582)
++|+|||.|.+-.+...-.+.. +.|..+ .+.+.++...+.+++ .+.....+...+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~v-~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGARV-HNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--EE-EEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCeE-EEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987765554443 113333 455655544444432 11111000111222235678999
Q ss_pred EEeccch----hHHHHHHHHHhcCCCCcEEE--EecCch
Q 007987 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (582)
Q Consensus 183 ILaVPd~----a~~~Vl~eI~~~Lk~GaiL~--~a~G~~ 215 (582)
+++.=.. .-.++++.|..+|++|+.|+ .++|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9987766 45679999999999999876 667763
No 374
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.31 E-value=0.62 Score=51.95 Aligned_cols=70 Identities=26% Similarity=0.283 Sum_probs=47.7
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks---~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
.+.+ |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......|+....+... .+...++|+||
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~--~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHD--DEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCccc--hhccccCCEEE
Confidence 3456 9999999999999999999999 99998887543221 12223456543222111 25677889988
Q ss_pred Ee
Q 007987 184 LL 185 (582)
Q Consensus 184 La 185 (582)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 73
No 375
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.29 E-value=1.1 Score=48.17 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=54.0
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHH---Hc
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA 160 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~-------------------sks~~~A~---~~ 160 (582)
..+.|+. .+|.|||+|..|..++++|... |+ ++.+.++.. .|....++ +.
T Consensus 22 ~q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~ 94 (355)
T PRK05597 22 GQQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL 94 (355)
T ss_pred HHHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH
Confidence 3577888 9999999999999999999988 76 444444321 01111111 11
Q ss_pred --Cceec--CCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 161 --GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 161 --G~~~~--d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
.+.++ ..... +..+.+++.|+||.++-+-....++.+..
T Consensus 95 np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 95 NPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 01111 23467899999999987765555666543
No 376
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=90.27 E-value=0.86 Score=48.89 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=49.1
Q ss_pred cccCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~G--smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~----~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| +||++||-+ ++..|++..+... |+++.+...+. ....+ .+++.|... ....++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 3778 999999975 8888998888877 88877665432 12222 233456321 0156899999
Q ss_pred ccCCeEEEe
Q 007987 177 SGSDLVLLL 185 (582)
Q Consensus 177 ~~ADIVILa 185 (582)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 377
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=90.23 E-value=1.1 Score=47.74 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.7
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cH----HHHHHcC-ceecCCCcCCHHhhhcc
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk--s~----~~A~~~G-~~~~d~t~~~~~Eav~~ 178 (582)
.++| +||++||- +++..+++..+... |+++.+.-.+.-. -. +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999996 69999999998877 9888776554311 11 2233344 332 4689999999
Q ss_pred CCeEEEec
Q 007987 179 SDLVLLLI 186 (582)
Q Consensus 179 ADIVILaV 186 (582)
+|+|...+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
No 378
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.21 E-value=0.85 Score=48.12 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=55.1
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+. ..+.+..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~--~~~~~AtVt~~hs~-------------------t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAP--GKFANATVTVCHSR-------------------TPDLAEECREADFLFVA 211 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCC--cccCCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4789 999999977 7899999999872 00005566554421 12467889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ..++++|++|++++
T Consensus 212 vG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 212 IGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred cCCCCc---CC--HHHcCCCCEEEEee
Confidence 964332 32 23458999888764
No 379
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.14 E-value=0.82 Score=49.62 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccH---HHHHHc
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA 160 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~-------------------sks~---~~A~~~ 160 (582)
..+.|+. .+|.|||+|-.|..++.+|... |+ ++.+.++.. .|.. +...+.
T Consensus 35 ~q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~ 107 (370)
T PRK05600 35 QQERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI 107 (370)
T ss_pred HHHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH
Confidence 3577888 9999999999999999999988 76 454444320 0111 011111
Q ss_pred --Cce--ecCCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHHh
Q 007987 161 --GFT--EENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIFS 200 (582)
Q Consensus 161 --G~~--~~d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~ 200 (582)
.+. .....+. +..+.+++.|+||-++-.-....++.++..
T Consensus 108 np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 108 QPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 1011111 244678899999999888777667776543
No 380
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.09 E-value=1.2 Score=51.31 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~ 342 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRH 342 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCC
Confidence 58 9999999999999999999998 9888877654
No 381
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.07 E-value=1.1 Score=46.61 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HHhhhccCCeEEEecc
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~---~~Eav~~ADIVILaVP 187 (582)
|||.|+| .|.+|..++..|.+. |++|++..|+.++. ......|+....+.+.+ ..++++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999998 99988777754332 11122354321122233 4567889999998764
No 382
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.04 E-value=0.56 Score=50.40 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=88.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHHhh-hccCCeEEEec
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds-~~~~g~G~~ViVg~r~--~sks~~~A~~~G~~~~d~t~~~~~Ea-v~~ADIVILaV 186 (582)
.+|+|||. |..|.-+.+-|..+ ++ ..++...... ..+.....- .... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 78999995 99999999988774 10 1243322221 122222100 0122 2233332 26899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEeec
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~ 266 (582)
|.....++.++.. +.|..|++.++-- .+.++++ .+-|---...+ +.+++ .+ +|+ +
T Consensus 75 p~~~s~~~~~~~~---~~g~~VIDlS~~f---------Rl~~~vP--~~lPEvn~~~l-~~i~~------~~---iIA-n 129 (336)
T PRK08040 75 GREASAAYAEEAT---NAGCLVIDSSGLF---------ALEPDVP--LVVPEVNPFVL-ADYRN------RN---IIA-V 129 (336)
T ss_pred CHHHHHHHHHHHH---HCCCEEEECChHh---------cCCCCCc--eEccccCHHHH-hhhcc------CC---EEE-C
Confidence 9987777776653 3588888877642 1111332 33442222111 11111 12 233 5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHHHHH
Q 007987 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFT 324 (582)
Q Consensus 267 qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d~lV 324 (582)
+++..-++-+++.=+...|.. +..-.|.+. ..||++-+.++.+.+...
T Consensus 130 PgC~~t~~~laL~PL~~~~~i--------~~viV~t~q--gvSGAG~~~~~~L~~qt~ 177 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGL--------SRLHVTNLL--SASAHGKAAVDALAGQSA 177 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------eEEEEEeec--cccccChhhHHHHHHHHH
Confidence 555555666655544444432 112223333 588888888777665443
No 383
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.02 E-value=1.3 Score=49.23 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=30.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~ 173 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRH 173 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Confidence 67 9999999999999999999998 9888777554
No 384
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=90.00 E-value=1.7 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh
Q 007987 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (582)
Q Consensus 112 kkIgIIG~-GsmG~AiA~nLrds 133 (582)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 68999999 99999999999876
No 385
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.00 E-value=1.4 Score=46.98 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=40.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceec--CCCc-C-CHHhhhccCCeEEEe
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGTL-G-DIYETISGSDLVLLL 185 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~--~G~~~~--d~t~-~-~~~Eav~~ADIVILa 185 (582)
+||+|||.|.+|.+.|..|... +.+-++++.+....+..-.|.+ ++.... +..+ . ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 2233555555542222211111 111000 0001 1 114678999999997
Q ss_pred c
Q 007987 186 I 186 (582)
Q Consensus 186 V 186 (582)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
No 386
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.99 E-value=2 Score=45.59 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEec
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t-~~~~~Eav~~ADIVILaV 186 (582)
.| ++|.|+|.|.+|...++.++.. |.+|++......+..+.+++.|+... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999999888 88776655554454556667786320 000 001222233579998887
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 007987 187 SDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
.... .+++....++++-.++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6422 3444445566655544
No 387
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.85 E-value=1.3 Score=48.12 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=62.0
Q ss_pred cccCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~----------GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| ++|+|.|+ .+-...++..|.+. |.+|.+++..-.. ... ...+. +.+..+++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 3688 99999998 55777888888888 9998877654222 111 11211 45778999
Q ss_pred ccCCeEEEeccchhHHH-HHHHHHhcCCCCcEEEE
Q 007987 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (582)
Q Consensus 177 ~~ADIVILaVPd~a~~~-Vl~eI~~~Lk~GaiL~~ 210 (582)
+++|+|++++......+ -++.+...+++ .+|++
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999888765 35667766654 35555
No 388
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=89.74 E-value=2.3 Score=45.03 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=50.0
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----cHHH-HHHcCceecCCCcCCHHhhhccCC
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE-ARAAGFTEENGTLGDIYETISGSD 180 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk----s~~~-A~~~G~~~~d~t~~~~~Eav~~AD 180 (582)
.++| .||++||- ++..++++..+..- |++|.+.....-. ..+. +++.|... ....+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASI--EVTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeE--EEEcCHHHHhCCCC
Confidence 4788 89999997 78999999998877 8887766543211 1111 55567432 01468899999999
Q ss_pred eEEEe
Q 007987 181 LVLLL 185 (582)
Q Consensus 181 IVILa 185 (582)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 389
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.66 E-value=2.1 Score=44.98 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=55.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHH-hhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhc--cCCeEEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrd-s~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~--~ADIVIL 184 (582)
.| .++.|+|+|.+|...++-++. . | .+|++..+. +...+.+++.|... ..++..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 36 899999999999988887775 3 3 356555444 34456666655431 1112222 4799998
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEE
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
++........+++....++++-.++.
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 88743334456666667777665543
No 390
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.64 E-value=5.1 Score=43.31 Aligned_cols=149 Identities=13% Similarity=0.131 Sum_probs=80.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--e-EEEEecC--CcccHHHHHHcCc--eecCCCcCCHHhhhccCCeEE
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLRK--GSRSFAEARAAGF--TEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~--~-ViVg~r~--~sks~~~A~~~G~--~~~d~t~~~~~Eav~~ADIVI 183 (582)
++|||+| .|..|..+.+.|.++ .+ . +.+.-.. ..+.. ..-.|. ...+ .+. .....++.|++|
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~--~~f~~~~~~v~~-~~~-~~~~~~~~Divf 71 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKY--IEFGGKSIGVPE-DAA-DEFVFSDVDIVF 71 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCcc--ccccCccccCcc-ccc-cccccccCCEEE
Confidence 7899998 699999999999886 33 2 2222222 11211 111122 1100 011 123456899999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEE
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~ali 263 (582)
.+.+.....++.++.. +.|.+|++.++.. ..-+|+++ |-|--..... ..|++ +| .+|
T Consensus 72 ~~ag~~~s~~~~p~~~---~~G~~VIdnsSa~---------Rm~~DVPL--VVPeVN~~~l-~~~~~------rg--~Ii 128 (334)
T COG0136 72 FAAGGSVSKEVEPKAA---EAGCVVIDNSSAF---------RMDPDVPL--VVPEVNPEHL-IDYQK------RG--FII 128 (334)
T ss_pred EeCchHHHHHHHHHHH---HcCCEEEeCCccc---------ccCCCCCE--ecCCcCHHHH-Hhhhh------CC--CEE
Confidence 9999887777777655 4688888887652 12234443 4453322221 12222 34 323
Q ss_pred eeccCCCHHHHHHHH-HHHHHhCCCccccccc
Q 007987 264 AVHQDVDGRATNVAL-GWSVALGSPFTFATTL 294 (582)
Q Consensus 264 Av~qd~tgeale~al-ala~aiG~~~~iettf 294 (582)
+ +.+++-..+-.++ -|....|..++.-||.
T Consensus 129 a-npNCst~~l~~aL~PL~~~~~i~~v~VsTy 159 (334)
T COG0136 129 A-NPNCSTIQLVLALKPLHDAFGIKRVVVSTY 159 (334)
T ss_pred E-CCChHHHHHHHHHHHHHhhcCceEEEEEEe
Confidence 3 6666665554444 3444466555555553
No 391
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=89.49 E-value=1.1 Score=48.21 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred cccCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~G--smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~----~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| .||++||-+ ++..+++..+... |+++.+.-... ....+ .+++.|... ....++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKI--TLTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 3678 999999976 7899999988877 88877665432 11122 233445321 0146899999
Q ss_pred ccCCeEEEec
Q 007987 177 SGSDLVLLLI 186 (582)
Q Consensus 177 ~~ADIVILaV 186 (582)
+++|+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 392
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.47 E-value=1.1 Score=47.29 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=54.8
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.+..++ .+..|.+... + ..++.+.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~AtVtvchs---~----------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQKHPD--TNATVTLLHS---Q----------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhCcCC--CCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999765000 0234544321 1 23567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-.. ++. ..++|+|++|+++.
T Consensus 208 vG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEec
Confidence 98543 232 34578999988764
No 393
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.40 E-value=1.1 Score=50.78 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=50.6
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC--------------------cccHHHHHHcCceec-
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~--------------------sks~~~A~~~G~~~~- 165 (582)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+.. ....+.+.+.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999998 88887765321 122456777886421
Q ss_pred CCCc-C--CHHhhhccCCeEEEeccc
Q 007987 166 NGTL-G--DIYETISGSDLVLLLISD 188 (582)
Q Consensus 166 d~t~-~--~~~Eav~~ADIVILaVPd 188 (582)
+... . +.++.-...|+||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 133334467999998864
No 394
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.32 E-value=1.2 Score=47.73 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=53.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-HHHHcCcee--------cCCC--cCCHHhhhccC
Q 007987 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGT--LGDIYETISGS 179 (582)
Q Consensus 112 kkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~-~A~~~G~~~--------~d~t--~~~~~Eav~~A 179 (582)
.+|+|+| .|.+|..+.+.|.+. ..++++...+..+..-+ .....++.. .+-. ..+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 7899998 899999999988865 12355433233211100 110011100 0000 1233 345789
Q ss_pred CeEEEeccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCch
Confidence 999999999877666655433 56667766653
No 395
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.04 E-value=2.2 Score=46.13 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceecCCCcCCHHhh-hccCCeEEE
Q 007987 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (582)
Q Consensus 111 ikkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~----~G~~~~d~t~~~~~Ea-v~~ADIVIL 184 (582)
|.||+||| -|--|.-+.+-|... ..+++.....+..+-...... .|.....-...+.+++ ..++|+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 466666666666543 134544333221111111111 1211000001233443 445899999
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecC
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (582)
|+|+..-.++..++.. +|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999988888777543 4555777765
No 396
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=88.95 E-value=1.2 Score=47.83 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=48.8
Q ss_pred cccCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccH----HHHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~G--smG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~----~~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| .||++||-+ ++..|++..+... |+++.+...+.- ... +.+.+.|... ....++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARI--TVTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999986 6888888888777 888777654321 111 2234456331 0157899999
Q ss_pred ccCCeEEEec
Q 007987 177 SGSDLVLLLI 186 (582)
Q Consensus 177 ~~ADIVILaV 186 (582)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 397
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.70 E-value=1.6 Score=45.91 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=39.6
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC--ceecCCC-cCCHHhhhccCCeEEEecc
Q 007987 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENGT-LGDIYETISGSDLVLLLIS 187 (582)
Q Consensus 116 IIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~--~G--~~~~d~t-~~~~~Eav~~ADIVILaVP 187 (582)
|||.|.+|.++|..|... ++ ++++.+....+....+.+ +. +..-+-. ..+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 565555544333322222 11 1100000 1233467899999999654
No 398
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=88.48 E-value=1.4 Score=47.35 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=49.0
Q ss_pred cccCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHH----HHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~G--smG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~----~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| +||++||-+ ++..+++..+... |+++.+...+.- .-.+ .++..|... ....++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKI--TITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999997 7888888888776 888766654321 1112 233456431 0146889999
Q ss_pred ccCCeEEEec
Q 007987 177 SGSDLVLLLI 186 (582)
Q Consensus 177 ~~ADIVILaV 186 (582)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 399
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.39 E-value=1.5 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.| ++|+|||.|..|.+.|..|+.. |++|+|..+.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~ 359 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRH 359 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 57 9999999999999999999998 9988887653
No 400
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.12 E-value=1.4 Score=46.81 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=54.2
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |+|.|||-+ ..|..++.-|.+.. ...+..|.+... + ..++++.+++||+||.+
T Consensus 158 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~atVtv~hs---~----------------T~~l~~~~~~ADIvVsA 215 (297)
T PRK14168 158 ETSG-AEVVVVGRSNIVGKPIANMMTQKG--PGANATVTIVHT---R----------------SKNLARHCQRADILIVA 215 (297)
T ss_pred CCCC-CEEEEECCCCcccHHHHHHHHhcc--cCCCCEEEEecC---C----------------CcCHHHHHhhCCEEEEe
Confidence 4889 999999966 88999999987650 000235555322 1 13567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+.-... +. ...+|+|++|+++.
T Consensus 216 vGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 216 AGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEecC
Confidence 874332 32 34578999888753
No 401
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.05 E-value=1.6 Score=47.70 Aligned_cols=68 Identities=22% Similarity=0.190 Sum_probs=45.4
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCC-HHhhhccCCeEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-s~~~A~~--~G~~~~d~t~~~-~~Eav~~ADIVI 183 (582)
+++ ++|.|+|.|..|.+.|+-|.+. |..|.+.+..... ..+..++ .|+... ... ..+...+.|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 457 8999999999999999999998 9988766544322 1222222 366531 111 233456899999
Q ss_pred Ee
Q 007987 184 LL 185 (582)
Q Consensus 184 La 185 (582)
..
T Consensus 73 ~s 74 (445)
T PRK04308 73 LS 74 (445)
T ss_pred EC
Confidence 84
No 402
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.88 E-value=1.9 Score=47.04 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHh
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds 133 (582)
.+.|+. .+|.|||+|..|..++.+|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 566788 9999999999999999999988
No 403
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.82 E-value=1.5 Score=48.70 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~---~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 567 9999999999999999999998 999888764322111 1222222221 1 1122355678999988
Q ss_pred e
Q 007987 185 L 185 (582)
Q Consensus 185 a 185 (582)
.
T Consensus 76 S 76 (468)
T PRK04690 76 S 76 (468)
T ss_pred C
Confidence 3
No 404
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.77 E-value=2.7 Score=46.40 Aligned_cols=173 Identities=20% Similarity=0.150 Sum_probs=98.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH--HHHHHc--Cceec----------------CCCc
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~--~~A~~~--G~~~~----------------d~t~ 169 (582)
|.+|-|+|.|..+--+|..++.. +- +|-+..|.+.++. -.+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999975 32 4444455433333 222222 21100 2223
Q ss_pred CCHHhhhccCCeEEEeccchhHHHHHHHHHh-cCCC-CcEEEEecCchhhhhhcccc-cCCCCCcEEEe----------c
Q 007987 170 GDIYETISGSDLVLLLISDAAQADNYEKIFS-CMKP-NSILGLSHGFLLGHLQSMGL-DFPKNIGVIAV----------C 236 (582)
Q Consensus 170 ~~~~Eav~~ADIVILaVPd~a~~~Vl~eI~~-~Lk~-GaiL~~a~G~~i~~~~~~~i-~~p~dv~VI~v----------~ 236 (582)
.+.+++..+=|.+|||||-++..+|+++|.+ .|+. .++|.++..|.-+.+.+..+ ....++.||.. .
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 4567777778999999999999999997643 2333 33566665553222211111 12236666643 2
Q ss_pred cCCChhhHHHHHhhcccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCc-ccccccccccc
Q 007987 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYR 299 (582)
Q Consensus 237 Pngpg~~vR~ly~~G~e~~G~Gv~aliAv~qd~tgeale~alala~aiG~~~-~iettf~~E~~ 299 (582)
...|-++.-...+. ...+. ..+.....++....+++.+|-.. +..+-+..|.+
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 33343443322222 22233 33445567888889999999753 35555555544
No 405
>PRK08223 hypothetical protein; Validated
Probab=87.73 E-value=2.6 Score=44.51 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHh
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds 133 (582)
.+.|+. .+|.|||+|-.|..++.+|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 577888 9999999999999999999988
No 406
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=87.55 E-value=1.9 Score=46.41 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=49.2
Q ss_pred cccCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccH----HHHHHcCceecCCCcCCHHhhh
Q 007987 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (582)
Q Consensus 107 ~l~gikkIgIIG~G--smG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~----~~A~~~G~~~~d~t~~~~~Eav 176 (582)
.++| .||++||-+ ++..+++..+... |+++.+.-.+.- .-. +.+++.|... ....++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i--~~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNI--TLTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999986 7899999988877 888777654321 111 2344456332 0156899999
Q ss_pred ccCCeEEEe
Q 007987 177 SGSDLVLLL 185 (582)
Q Consensus 177 ~~ADIVILa 185 (582)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999885
No 407
>PLN03075 nicotianamine synthase; Provisional
Probab=87.53 E-value=3.1 Score=44.14 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=59.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-----CceecCCC---cCCHHhh---hc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEENGT---LGDIYET---IS 177 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~-----G~~~~d~t---~~~~~Ea---v~ 177 (582)
.. ++|+.||+|..|-+-..-++..++ +- .+++.+.++...+.|++. |+. +.. ..+..+. ..
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccccC
Confidence 45 899999999987755444433211 22 346777766656555542 221 000 1222222 35
Q ss_pred cCCeEEEecc----chhHHHHHHHHHhcCCCCcEEEE--ecCc
Q 007987 178 GSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (582)
Q Consensus 178 ~ADIVILaVP----d~a~~~Vl~eI~~~Lk~GaiL~~--a~G~ 214 (582)
+-|+|++.+= .....++++.+...|+||.++++ +||.
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 7899999851 24557799999999999998764 4553
No 408
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=87.45 E-value=2.3 Score=49.25 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=59.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eE--EEEecCCc------ccHHHHHHc--Cce--ecCC-CcCCHHh
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EENG-TLGDIYE 174 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~V--iVg~r~~s------ks~~~A~~~--G~~--~~d~-t~~~~~E 174 (582)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. .-+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999998 76 22 22232222 234555552 211 1011 1335778
Q ss_pred hhccCCeEEEeccchhHHHHHHHHHhcCCCCc--EEEEecCc
Q 007987 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHGF 214 (582)
Q Consensus 175 av~~ADIVILaVPd~a~~~Vl~eI~~~Lk~Ga--iL~~a~G~ 214 (582)
+++..|+|++++-+..+..+-.-....++.|+ +.....|.
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~ 242 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ 242 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 99999999999886655432221122233443 44566665
No 409
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.41 E-value=1.5 Score=52.09 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=46.5
Q ss_pred CCEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 111 ikkIgIIG~GsmG~Ai-A~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+++|.|||+|..|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3679999999999997 9999998 99987666543333344456687642 12233556789999873
No 410
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=87.38 E-value=1.5 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEccchhHHHHHHHHHHh
Q 007987 113 QIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds 133 (582)
||.|||+|..|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
No 411
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.31 E-value=1.9 Score=43.04 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.5
Q ss_pred ccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 106 ~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
+..++ ++|.|+|. |.+|..+++.|.+. |++|++..|+.
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~ 51 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDV 51 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCH
Confidence 44556 89999995 99999999999998 99887666653
No 412
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=87.25 E-value=3 Score=44.96 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=48.4
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHHhhhc
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~----A~~~G~~~~d~t~~~~~Eav~ 177 (582)
.++| .||++||- .++..+++..+..- |++|.+.-.+. ..-.+. +...|... ....+++++++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSV--LVTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeE--EEEcCHHHHhC
Confidence 4788 99999997 58888888888776 88877665432 112222 23346321 01468899999
Q ss_pred cCCeEEEec
Q 007987 178 GSDLVLLLI 186 (582)
Q Consensus 178 ~ADIVILaV 186 (582)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 413
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=87.25 E-value=0.93 Score=49.35 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC---CHHhhhccCCeEEE---
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLL--- 184 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~---~~~Eav~~ADIVIL--- 184 (582)
+++|||||-|..|.=|++.-+.- |+++++.+.. +.+........... ...+ .+.+++++||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~--~~~dD~~al~ela~~~DViT~EfE 71 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIV--AAYDDPEALRELAAKCDVITYEFE 71 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceee--cCCCCHHHHHHHHhhCCEEEEeec
Confidence 38999999999999999998887 9998776543 22222222233331 0112 36688889999865
Q ss_pred eccchhHHHH
Q 007987 185 LISDAAQADN 194 (582)
Q Consensus 185 aVPd~a~~~V 194 (582)
-+|.++...+
T Consensus 72 ~V~~~aL~~l 81 (375)
T COG0026 72 NVPAEALEKL 81 (375)
T ss_pred cCCHHHHHHH
Confidence 3444443333
No 414
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=87.23 E-value=1.9 Score=47.41 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred cccCCCEEEEEcc-----c---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcC
Q 007987 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (582)
Q Consensus 107 ~l~gikkIgIIG~-----G---smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~----A~~~G~~~~d~t~~ 170 (582)
.++| +||+|+|. | ++..+++..+..- |+++.+.-.++ +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3677 89999985 4 6778888888776 88887765542 122233 444563210 146
Q ss_pred CHHhhhccCCeEEEec
Q 007987 171 DIYETISGSDLVLLLI 186 (582)
Q Consensus 171 ~~~Eav~~ADIVILaV 186 (582)
++++++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 415
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=87.00 E-value=1.5 Score=47.75 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH----HHH-HcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~----~A~-~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+|.|||+|..|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.+.++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEEC
Confidence 589999999999999999999 9998776654332121 122 2477541 11224556789988873
No 416
>PRK06392 homoserine dehydrogenase; Provisional
Probab=86.95 E-value=1.6 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred CEEEEEccchhHHHHHHHHHHh
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDS 133 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds 133 (582)
++|+|||+|++|..+++.|++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 3799999999999999998773
No 417
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=86.91 E-value=1.5 Score=41.51 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=48.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHH---hhhccCCeEEEeccch
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLLLISDA 189 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~---Eav~~ADIVILaVPd~ 189 (582)
++.|+|.|..|..++..|++. |++++...+.+.... ...-.|+.. +.+.+ +..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 378999999999999999988 998765555432211 112246553 33333 3344568899999754
Q ss_pred hH-HHHHHHHH
Q 007987 190 AQ-ADNYEKIF 199 (582)
Q Consensus 190 a~-~~Vl~eI~ 199 (582)
.. .++++.+.
T Consensus 70 ~~~~~i~~~l~ 80 (201)
T TIGR03570 70 KLRRRLFEKLK 80 (201)
T ss_pred HHHHHHHHHHH
Confidence 44 44555544
No 418
>PLN02342 ornithine carbamoyltransferase
Probab=86.87 E-value=2.1 Score=46.40 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=49.3
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcC---ceecCCCcCCHHhhhcc
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~A~~~G---~~~~d~t~~~~~Eav~~ 178 (582)
.++| .||++||-+ ++..+++..+... |+++.+..... ....+.+++.| +.. ..++++++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4788 999999974 7888888888776 88877665432 12234455545 332 5688999999
Q ss_pred CCeEEEec
Q 007987 179 SDLVLLLI 186 (582)
Q Consensus 179 ADIVILaV 186 (582)
||+|...+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
No 419
>PRK07411 hypothetical protein; Validated
Probab=86.83 E-value=1.8 Score=47.18 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=54.6
Q ss_pred ccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHH---Hc
Q 007987 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA 160 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~-------------------sks~~~A~---~~ 160 (582)
..+.|+. .+|.|||+|..|..++++|..+ |+ ++++.+... .|....++ +.
T Consensus 32 ~q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~ 104 (390)
T PRK07411 32 GQKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI 104 (390)
T ss_pred HHHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH
Confidence 3567888 9999999999999999999988 66 333333210 01111111 11
Q ss_pred --Ccee--cCCCcC--CHHhhhccCCeEEEeccchhHHHHHHHHH
Q 007987 161 --GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (582)
Q Consensus 161 --G~~~--~d~t~~--~~~Eav~~ADIVILaVPd~a~~~Vl~eI~ 199 (582)
.+.+ ....+. +..+.+++.|+||.++-+-...-++.++.
T Consensus 105 np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 105 NPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 011111 23467889999999988777766777654
No 420
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.67 E-value=3.7 Score=40.63 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=50.0
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE-e
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-L 185 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL-a 185 (582)
++| |++.|+|. |-+|.++++.|.+. |.+|++..++..+..+.....+ ...+.+ .
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~Dl 60 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCDV 60 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEecC
Confidence 567 99999995 79999999999988 9887765554322111111111 111211 2
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
+.+....++++++...+.+=.+|++.+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 33445566777776655433467777776
No 421
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=86.62 E-value=1.3 Score=47.65 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=41.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HHhhhccCCeEEE
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~---~~Eav~~ADIVIL 184 (582)
|++|+|||.|..|.-+++.+++. |+++++.+..... ........... ....| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~-pa~~~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDS-PAAQVADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCC-chhHhCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 9998776654222 11111222221 11233 4567788888643
No 422
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=86.35 E-value=4.8 Score=43.56 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=61.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc-CCHHhh----h--ccCCe
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYET----I--SGSDL 181 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~-~~~~Ea----v--~~ADI 181 (582)
.| .+|.|+|.|.+|...++-++.. |.++++..+.+....+.|++.|+..-+... .+..+. . ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 46 8999999999999999998888 887555544445568888988874211111 122222 2 24799
Q ss_pred EEEeccchhH-----------HHHHHHHHhcCCCCcEEEE
Q 007987 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 182 VILaVPd~a~-----------~~Vl~eI~~~Lk~GaiL~~ 210 (582)
||-++-.... ...+++....+++|-.|++
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 9998875421 1356655566777665543
No 423
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.12 E-value=2 Score=47.12 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCCHHhhhccCCeEEE
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk-s~~~A~~--~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
-+|.|||+|..|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~ 74 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIII 74 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEE
Confidence 4799999999999999999998 9988766654322 2232333 36653100 112345678999887
No 424
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.07 E-value=4.9 Score=43.17 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=56.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC---HHhhhccCCeEEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~---~~Eav~~ADIVIL 184 (582)
.| .+|.|.|.|.+|...++-++.. |.+|++..+..++..+.+++.|.... + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 46 8999999999999999999988 88776655544444667777786320 0 011 1222334799998
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEE
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
++.... .+.+....++++-.++
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEE
Confidence 876432 2333344455555443
No 425
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=86.05 E-value=2.7 Score=42.51 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.7
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HHhhh------cc-CCe
Q 007987 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (582)
Q Consensus 113 kIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~---~~Eav------~~-ADI 181 (582)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........+ +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789996 99999999999998 999888888654321 1222110111233 33455 45 899
Q ss_pred EEEeccc
Q 007987 182 VLLLISD 188 (582)
Q Consensus 182 VILaVPd 188 (582)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988874
No 426
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=85.94 E-value=2.8 Score=44.21 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.6
Q ss_pred cccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007987 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (582)
Q Consensus 105 ~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~ 147 (582)
.+.|+. .+|.|||+|..|..+|+||.-+ |+ .+.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456677 8999999999999999999988 77 454444
No 427
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=85.89 E-value=1.7 Score=46.67 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=86.6
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCce---EEEEecC--CcccHHHHHHcCceecCCCcCCH-HhhhccCCeEEEe
Q 007987 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (582)
Q Consensus 113 kIgIIG-~GsmG~AiA~nLrds~~~~g~G~~---ViVg~r~--~sks~~~A~~~G~~~~d~t~~~~-~Eav~~ADIVILa 185 (582)
+|+||| .|..|..+.+-|.+. ++. +.+..+. ..+... -.|... .+.+. .+.+++.|+||++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 589999 899999999988776 552 3222222 122222 112111 01111 2345889999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCCcEEEeccCCChhhHHHHHhhcccccCCCceEEEee
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~~~~~~i~~p~dv~VI~v~Pngpg~~vR~ly~~G~e~~G~Gv~aliAv 265 (582)
+|.....++.+++. +.|..|++.++.. .+.+++++ +-|--- ++.+.... -.+ +|+
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~~---------R~~~~~p~--~vpevN----~~~i~~~~---~~~---iia- 123 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSAF---------RMDPDVPL--VVPEVN----LEDLKEFN---TKG---IIA- 123 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHHH---------hCCCCCCE--EeCCcC----HHHHhhCc---cCC---EEE-
Confidence 99987777766543 4577777777642 11112332 334221 22222210 012 243
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCccccccccccccccchhhhhhhchHHHHHHHHHH
Q 007987 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFR 321 (582)
Q Consensus 266 ~qd~tgeale~alala~aiG~~~~iettf~~E~~sDlfgEqvLsG~~pAlieAl~d 321 (582)
..+.+..++-.++.-+...+.. +..-.+.++ ..+|.+...++.++.
T Consensus 124 np~C~~t~~~l~l~pL~~~~~i--------~~i~vtt~~--~vSgaG~~~~~~l~~ 169 (339)
T TIGR01296 124 NPNCSTIQMVVVLKPLHDEAKI--------KRVVVSTYQ--AVSGAGNAGVEELYN 169 (339)
T ss_pred CCCcHHHHHHHHHHHHHHhcCc--------cEEEEEeee--chhhcChhhHHHHHH
Confidence 4555666777776666554442 222233343 477877776666543
No 428
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=85.88 E-value=3.6 Score=43.67 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.1
Q ss_pred cccCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEE
Q 007987 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (582)
Q Consensus 107 ~l~gikkIgIIG~---GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVI 183 (582)
.++| +||++||- +++..|++..+..- |+++.+...++-.... . ..+.. ..++++++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999999887 8887766543211000 0 01222 578999999999887
Q ss_pred Ee
Q 007987 184 LL 185 (582)
Q Consensus 184 La 185 (582)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
No 429
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.82 E-value=10 Score=37.03 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.2
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999988 98887766653
No 430
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.71 E-value=4 Score=40.45 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.9
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.++| ++|.|+|. |.+|.++++.|.+. |.+|++..++
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3778 99999997 89999999999988 9888776654
No 431
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.65 E-value=2.1 Score=47.14 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.9
Q ss_pred ccCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHHhh
Q 007987 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (582)
Q Consensus 108 l~gikkIgIIG~G----------smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~--G~~~~d~t~~~~~Ea 175 (582)
++| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999974 3344555666666 8888776553 22333322 2332 5789999
Q ss_pred hccCCeEEEeccchhHHHHH
Q 007987 176 ISGSDLVLLLISDAAQADNY 195 (582)
Q Consensus 176 v~~ADIVILaVPd~a~~~Vl 195 (582)
+++||+|++++..+...++=
T Consensus 374 ~~~aDaivi~tew~ef~~~d 393 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLD 393 (414)
T ss_pred HhhCCEEEEeccHHHHhccC
Confidence 99999999999988887643
No 432
>PLN02527 aspartate carbamoyltransferase
Probab=85.54 E-value=2.3 Score=45.06 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=49.0
Q ss_pred cccCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHHhhhccC
Q 007987 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (582)
Q Consensus 107 ~l~gikkIgIIG~G---smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~A~~~G~~~~d~t~~~~~Eav~~A 179 (582)
.++| .||++||-+ ++..+++..+... .|+++.+...+. ....+.+++.|... ....++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEW--EESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEE--EEEcCHHHHhCCC
Confidence 3788 999999976 5889999887653 167776665432 22344555556532 1146889999999
Q ss_pred CeEEEe
Q 007987 180 DLVLLL 185 (582)
Q Consensus 180 DIVILa 185 (582)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
No 433
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=85.45 E-value=3.1 Score=44.65 Aligned_cols=94 Identities=19% Similarity=0.108 Sum_probs=51.7
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCc----------------eecCCC---cC--
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGF----------------TEENGT---LG-- 170 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~-~sks~~~A~~~G~----------------~~~d~t---~~-- 170 (582)
+|||+|+|.+|+.+.+.|.++. .+.+++|+-.++. +.+......+++- .. ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v-~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHV-NGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEE-CCeEEEEEEc
Confidence 5999999999999999988650 0013665433332 2222233333221 00 000 11
Q ss_pred -CHHhh---hccCCeEEEeccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 171 -DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 171 -~~~Ea---v~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
++++. -.+.|+||.|++.....+... .+++.|+.+++.+
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~---~~l~aGa~~V~~S 120 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGE---RHIRAGAKRVLFS 120 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHH---HHHHcCCeEEEec
Confidence 23221 147899999999876655544 3456786655443
No 434
>PRK06182 short chain dehydrogenase; Validated
Probab=85.31 E-value=5.2 Score=40.10 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH---Hhhhc-------
Q 007987 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (582)
Q Consensus 109 ~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~---~Eav~------- 177 (582)
++ ++|.|.|. |-+|.++++.|.+. |.+|++..|+..+ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999995 79999999999988 9988776665333 2222233332111112332 23333
Q ss_pred cCCeEEEecc
Q 007987 178 GSDLVLLLIS 187 (582)
Q Consensus 178 ~ADIVILaVP 187 (582)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5699998764
No 435
>PRK10637 cysG siroheme synthase; Provisional
Probab=85.30 E-value=4 Score=45.43 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=55.8
Q ss_pred cccccccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHHhhhccC
Q 007987 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (582)
Q Consensus 101 f~~~~~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G-~~~~d~t~~~~~Eav~~A 179 (582)
|| ..-.|+| ++|.|||-|.+|..=++.|.+. |.+|.|.-..-.+......+.| +....+.. . .+-++++
T Consensus 4 ~P-~~~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~ 73 (457)
T PRK10637 4 LP-IFCQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTC 73 (457)
T ss_pred ec-eEEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCC
Confidence 45 3356899 9999999999999999999988 8877665443222232222333 22111111 2 2446889
Q ss_pred CeEEEeccchhHHHHHH
Q 007987 180 DLVLLLISDAAQADNYE 196 (582)
Q Consensus 180 DIVILaVPd~a~~~Vl~ 196 (582)
++||.||.|...-+-+.
T Consensus 74 ~lv~~at~d~~~n~~i~ 90 (457)
T PRK10637 74 WLAIAATDDDAVNQRVS 90 (457)
T ss_pred EEEEECCCCHHHhHHHH
Confidence 99999999987654333
No 436
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=85.14 E-value=3.4 Score=41.95 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=55.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHHhhhccCCeEEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~----G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
.| ++|.-||||+ | .++..+... |...+++.+.++...+.|++. ++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999998 5 445555555 554356777666555555543 3310 0000000014799887
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
-.....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665556667888899999998877654
No 437
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.12 E-value=6.5 Score=39.15 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=56.2
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCCHHhh--hccCCeEEE
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~-ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea--v~~ADIVIL 184 (582)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++ .....+..+.+++.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVG-VDPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-ECCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999999988887 877 644 44434446677877721 1111111111 135799998
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344555566666555433
No 438
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.06 E-value=3.8 Score=47.54 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=48.9
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--------------------ccHHHHHHcCceecCC
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s--------------------ks~~~A~~~G~~~~d~ 167 (582)
-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 457 8999999999999999999998 888877765321 0134455667653211
Q ss_pred Cc----CCHHhhhccCCeEEEecc
Q 007987 168 TL----GDIYETISGSDLVLLLIS 187 (582)
Q Consensus 168 t~----~~~~Eav~~ADIVILaVP 187 (582)
+. .+.++.....|.||+++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 123444456899999875
No 439
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=84.99 E-value=2.2 Score=46.81 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.2
Q ss_pred EEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 113 kIgIIG~GsmG~A-iA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999998 99987766443333344455677641 11223456789998873
No 440
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.99 E-value=3 Score=46.16 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.9
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.-.+ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 3467 8999999999999999999998 9888777653
No 441
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.97 E-value=2.6 Score=44.80 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
.++| |++.|||-+ ..|..++.-|.... ...+..|.+... + ..++++.+++||+||.|
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKA--DGGNATVTVCHS---R----------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCc--cCCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4899 999999976 78999999987530 000235555322 1 13567789999999998
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 007987 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (582)
Q Consensus 186 VPd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (582)
+--.. ++. ..++|+|++|+++.
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEcc
Confidence 86433 232 25678999988764
No 442
>PLN02477 glutamate dehydrogenase
Probab=84.96 E-value=1.6 Score=48.18 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~Vi 144 (582)
..++| ++|+|.|+|++|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 46889 9999999999999999999988 88776
No 443
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=84.93 E-value=1.2 Score=47.54 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 111 ikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
|++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 47899999999999999999998 99988877653
No 444
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=84.87 E-value=9.1 Score=33.13 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=53.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCce---ecCCCcCC-HHhhhccCC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFT---EENGTLGD-IYETISGSD 180 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~----~~G~~---~~d~t~~~-~~Eav~~AD 180 (582)
.+ ++|.-||+|. +.++..+.+.. .+.++ ++.+.+....+.++ ..+.. ...+.... ........|
T Consensus 19 ~~-~~vldlG~G~--G~~~~~l~~~~----~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS--GSITIEAARLV----PNGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC--CHHHHHHHHHC----CCceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 7899999998 33333333320 02344 56665544444433 23321 10000011 112335789
Q ss_pred eEEEeccchhHHHHHHHHHhcCCCCcEEEE
Q 007987 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 181 IVILaVPd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
+|++.-++....++++++...|++|..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
No 445
>PRK07825 short chain dehydrogenase; Provisional
Probab=84.84 E-value=4.2 Score=40.72 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=50.5
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEec
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+..+..+.+...+ . .+ .-.+|+ .
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~---------~~-~~~~D~----~ 60 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAELG-L---------VV-GGPLDV----T 60 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhc-c---------ce-EEEccC----C
Confidence 567 89999996 78999999999998 9988777664322111111111 0 00 112232 2
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (582)
.++...++++++.....+=.+|+..+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 34444556666665443334677777763
No 446
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=84.81 E-value=8.2 Score=40.95 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=56.9
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--C--ceecCC-CcCCHHhhhcc
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG-TLGDIYETISG 178 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~--~ViVg~r~~sks~~~A~~~--G--~~~~d~-t~~~~~Eav~~ 178 (582)
..++. .||.|+|.|+.|.|.|..+.-+ |+ ++.+.+-...+..-++... | |...-. +....-.+.++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34455 8999999999999999998877 65 4444333333322222221 1 211000 01112245678
Q ss_pred CCeEEEeccchhH------------HHHHHHHHhcC---CCCcEEEEe-cCch
Q 007987 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLS-HGFL 215 (582)
Q Consensus 179 ADIVILaVPd~a~------------~~Vl~eI~~~L---k~GaiL~~a-~G~~ 215 (582)
+|+||+..--.+. .++++.|.|.+ .|++++.++ -.+.
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD 141 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD 141 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH
Confidence 9999997643222 23555555544 577776544 4443
No 447
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.70 E-value=6.9 Score=37.99 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s 151 (582)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999988 998877776543
No 448
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=84.69 E-value=4.7 Score=42.27 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~ 163 (582)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|+.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGAD 212 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCc
Confidence 46 8999999999999999999988 8876554443 4456777877863
No 449
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=84.51 E-value=10 Score=36.81 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=56.2
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHHhh-----hccCCe
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Ea-----v~~ADI 181 (582)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..++ ....+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 356 8999999999999999988887 8877655544 334556666664310 1001112221 245899
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
|+.+++.. ..+..+...++++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2344444555555554433
No 450
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=84.39 E-value=6 Score=40.97 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=62.7
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHHhhhc---cCC
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~----~~G~~~~d~t~~~~~Eav~---~AD 180 (582)
|.| ++|.=|||| |+.++.-|... |.+| .|.+-.++..+.|+ +.|+.. +-...+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 45777777776 8776 57776666666665 445542 222345666665 569
Q ss_pred eEEE-----eccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 181 IVIL-----aVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
+|+. -+|+... ++......+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 8887 3555443 777888899999877665
No 451
>PRK05717 oxidoreductase; Validated
Probab=84.29 E-value=4.7 Score=39.91 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=30.7
Q ss_pred ccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 106 ~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
-.++| |+|.|+|. |.+|.++++.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 34678 99999995 89999999999988 8888766554
No 452
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.18 E-value=3.1 Score=45.41 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=43.4
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa 185 (582)
+.+ ++|.|||+|..|.+.+.-|++. |.+|.+.+...........+.|+....+ ....+.++..|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEEC
Confidence 346 8999999999999999988888 9888665543322111112337653110 1223456778977763
No 453
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=84.16 E-value=3.3 Score=44.63 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=49.0
Q ss_pred cccCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHHhhhccC
Q 007987 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (582)
Q Consensus 107 ~l~gikkIgIIG~---GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~A~~~G~~~~d~t~~~~~Eav~~A 179 (582)
.++| .||++||- +++..+++..|... .|+++.+....+ ....+.+++.|.... ...+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999997 58899988876533 177776665432 223455555564321 146889999999
Q ss_pred CeEEEe
Q 007987 180 DLVLLL 185 (582)
Q Consensus 180 DIVILa 185 (582)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 454
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=84.14 E-value=5.6 Score=43.23 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH----------Hhhhc
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS 177 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~----------~Eav~ 177 (582)
-.| .+++|+|+|-+|.|-.++++.. |-..|++.+.+....+.|++.|.+. +.+. .++..
T Consensus 184 ~~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 184 EPG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred CCC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcC
Confidence 345 7899999999999999999988 7766778887777789999999863 2211 22333
Q ss_pred -cCCeEEEeccchh
Q 007987 178 -GSDLVLLLISDAA 190 (582)
Q Consensus 178 -~ADIVILaVPd~a 190 (582)
.+|.+|-++-...
T Consensus 253 gG~d~~~e~~G~~~ 266 (366)
T COG1062 253 GGADYAFECVGNVE 266 (366)
T ss_pred CCCCEEEEccCCHH
Confidence 6888888887544
No 455
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=84.06 E-value=3.3 Score=45.01 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=47.4
Q ss_pred cccCCCEEEEEccc--------hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcC
Q 007987 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (582)
Q Consensus 107 ~l~gikkIgIIG~G--------smG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~----A~~~G~~~~d~t~~ 170 (582)
.|+| +||+|+|.| ++..|++..+... |+++.+.-..+ +...+. +.+.|... ....
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~--~~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKF--NIVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 3678 899999853 4557788877776 88877765442 122232 33456432 0147
Q ss_pred CHHhhhccCCeEEEec
Q 007987 171 DIYETISGSDLVLLLI 186 (582)
Q Consensus 171 ~~~Eav~~ADIVILaV 186 (582)
++++++++||+|...+
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
No 456
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.01 E-value=7.1 Score=40.37 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=55.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceec-CCCcCCH---Hhhhc--cCCe
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSDL 181 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~-ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~---~Eav~--~ADI 181 (582)
.| .+|.|+|.|.+|...++-++.. |.+ |++..+ +....+.+++.|+... +..-.+. .+... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~-~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDP-SPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 47 8999999999999999999888 887 655433 3445677788886320 1000111 12222 4799
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9988876543 233334455555444
No 457
>PRK13984 putative oxidoreductase; Provisional
Probab=83.90 E-value=3.4 Score=47.11 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~ 315 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESL 315 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 56 8999999999999999999998 9888776543
No 458
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=83.86 E-value=3.3 Score=43.83 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=48.5
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHH----HHHcCceecCCCcCCHHhhhcc
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETISG 178 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~~----A~~~G~~~~d~t~~~~~Eav~~ 178 (582)
++| .||++||- ++...|++..+... |+++.+...+.- ...+. +.+.|... ....++++++++
T Consensus 146 l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSV--ELTHDPVEAVKG 216 (304)
T ss_pred CCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHhCC
Confidence 788 89999996 68889999888877 888776654321 11122 34455321 014688999999
Q ss_pred CCeEEEec
Q 007987 179 SDLVLLLI 186 (582)
Q Consensus 179 ADIVILaV 186 (582)
+|+|....
T Consensus 217 aDvvy~~~ 224 (304)
T TIGR00658 217 ADVIYTDV 224 (304)
T ss_pred CCEEEEcC
Confidence 99999853
No 459
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=83.82 E-value=3.5 Score=45.94 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=49.4
Q ss_pred cccCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHHhhhccC
Q 007987 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (582)
Q Consensus 107 ~l~gikkIgIIG~---GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~----sks~~~A~~~G~~~~d~t~~~~~Eav~~A 179 (582)
.++| +||++||- +++..+++..+... .|+++.+.-.+. +...+.+.+.|.... ...++++++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~-----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALY-----RGLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHh-----cCCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3788 99999998 48999999987542 177776654432 122344555564321 146889999999
Q ss_pred CeEEEec
Q 007987 180 DLVLLLI 186 (582)
Q Consensus 180 DIVILaV 186 (582)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999844
No 460
>PRK09242 tropinone reductase; Provisional
Probab=83.78 E-value=3.7 Score=40.63 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=52.2
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEEe-
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVILa- 185 (582)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|+.++ .+...+ ...+.....++.++.
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~-~~~~~~-----------~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDADA-LAQARD-----------ELAEEFPEREVHGLAA 67 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHH-HHHHHH-----------HHHhhCCCCeEEEEEC
Confidence 578 99999995 79999999999988 9988777665322 111111 111111123333332
Q ss_pred --ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 186 --VPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..+..+...++++...+.+=.+|+..+|.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23344455666666555444467777775
No 461
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.62 E-value=7.8 Score=41.03 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=53.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHHhhhc-----cCCe
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Eav~-----~ADI 181 (582)
.| .+|.|+|.|.+|...++-++.. |. +|++. ..++...+.+++.|+... +..-.+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAV-DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 8999999999999999988888 88 45444 444455778888886320 100011112121 3789
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
||-++.... .+......++++-.++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 988886422 2333333455544443
No 462
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=83.43 E-value=9.2 Score=40.24 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=55.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHHh----hhc--cCCe
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TIS--GSDL 181 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~E----av~--~ADI 181 (582)
.| .+|.|+|.|.+|...++-++.. |.+.++....+.+..+.+++.|.... +..-.+..+ +.. ..|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999998888 88523444444455778888886310 100112212 221 4788
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEEEe
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (582)
|+-++... ..+++....++++-.++..
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 88887642 2233334455665554433
No 463
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.35 E-value=7.4 Score=41.11 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHHhhhccCCeEEEec
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t-~~~~~Eav~~ADIVILaV 186 (582)
.| .++.|+|.|.+|...++-++.. |.++++..+.+.+....+++.|.... +.. ...+.+.....|+||-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8899999999999999998888 88776655544443334455776310 000 001122223569999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
.... .++.....++++..++.
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLIL 273 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEE
Confidence 7432 34444455666655443
No 464
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=83.29 E-value=6.4 Score=41.01 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=35.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~ 162 (582)
.| .+|.|.|.|.+|.+.++-++.. |.++++.........+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999888 88644444433444666777775
No 465
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=83.12 E-value=4.8 Score=44.99 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.1
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
-.| ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 141 ~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~ 175 (485)
T TIGR01317 141 RTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFERE 175 (485)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecC
Confidence 357 8999999999999999999998 8888777543
No 466
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.98 E-value=6.1 Score=39.48 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
++| |++.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 79999999999998 99887776653
No 467
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=82.96 E-value=2 Score=45.34 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.6
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcC-CceEEEEecCCcccHHHHHHcC-----ceecCCCcCCHHhhhccCCeEEEec
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~-G~~ViVg~r~~sks~~~A~~~G-----~~~~d~t~~~~~Eav~~ADIVILaV 186 (582)
-..|+|.|.|+..+...-.+. -. =.+|.++++....+.+.|...- +..+-....+.+++++.+|+|+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999988765543 01 1268889998877777776221 1111112456889999999999998
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhh
Q 007987 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (582)
Q Consensus 187 Pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~ 217 (582)
+-..- ++ ....++||+.|-.+.+|.-+
T Consensus 216 lsteP--il--fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEP--IL--FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCc--ee--eeeeecCCceEeeeccCCch
Confidence 85321 11 12467899988888888633
No 468
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=82.87 E-value=6.9 Score=43.31 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=63.2
Q ss_pred ccccCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhh
Q 007987 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (582)
Q Consensus 106 ~~l~gikkIgIIG~----------GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Ea 175 (582)
+.++| ++|+|.|+ .+-+..++..|++. |.+|.+++..-.. ....+..|... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCccc----c-h-hhh
Confidence 34788 99999998 57788888888888 9988877543111 11112334321 1 1 235
Q ss_pred hccCCeEEEeccchhHHHH-HHHHHhcCCCCcEEEEecCc
Q 007987 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 176 v~~ADIVILaVPd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (582)
+++||+|+++|.-....++ ++.+...++...+|++.-+.
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 7789999999998887653 56676666644577776554
No 469
>PLN02214 cinnamoyl-CoA reductase
Probab=82.85 E-value=5.7 Score=41.83 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=47.7
Q ss_pred ccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HH--Hc---CceecCCCcC---CHHhh
Q 007987 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR--AA---GFTEENGTLG---DIYET 175 (582)
Q Consensus 106 ~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~-A~--~~---G~~~~d~t~~---~~~Ea 175 (582)
..+++ ++|.|.|. |-+|..++..|.+. |++|++..|...+.... .. .. .+......+. +..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34567 89999997 99999999999998 99887666643321111 01 11 1111011122 24567
Q ss_pred hccCCeEEEeccc
Q 007987 176 ISGSDLVLLLISD 188 (582)
Q Consensus 176 v~~ADIVILaVPd 188 (582)
++.+|+||.+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 7889999987743
No 470
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.58 E-value=2.2 Score=49.07 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.7
Q ss_pred ccccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007987 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (582)
Q Consensus 106 ~~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sk 152 (582)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|+..+
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 44567 89999995 89999999999998 9998877776443
No 471
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.57 E-value=6.7 Score=40.14 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHh-hhccCCeEEEecc
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~E-av~~ADIVILaVP 187 (582)
+| .+|.|.|.|.+|.+.++.++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.+++
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcCC
Confidence 56 7999999999999999988887 88876655543 3456667777632 111111 2235688888766
Q ss_pred chhHHHHHHHHHhcCCCCcEEEE
Q 007987 188 DAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
.. ..++++...++++..++.
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEE
Confidence 43 346666667776665543
No 472
>PRK08374 homoserine dehydrogenase; Provisional
Probab=82.44 E-value=6.4 Score=42.17 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=50.3
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hh-hhcCCceEE-EEecCCc---------ccH-HHHHHcCceec--C--C-CcCC
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds---~~-~~g~G~~Vi-Vg~r~~s---------ks~-~~A~~~G~~~~--d--~-t~~~ 171 (582)
.+|+|+|+|++|..+++.|.+. +. ..|..++|+ |.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773 11 122224432 2232211 011 11111121000 0 0 0115
Q ss_pred HHhhh--ccCCeEEEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 172 ~~Eav--~~ADIVILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
.++.+ .++|+||=+++++...+++.+. ++.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 4789999999877666665543 34555444
No 473
>PRK07831 short chain dehydrogenase; Provisional
Probab=82.43 E-value=5.3 Score=39.69 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=31.9
Q ss_pred ccccccCCCEEEEEcc-c-hhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 104 LPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 104 ~~~~l~gikkIgIIG~-G-smG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
....++| +++.|.|. | -+|.++++.|.+. |.+|++..+.
T Consensus 11 ~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 11 GHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred cccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3456778 99999997 6 5999999999988 9988776654
No 474
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.40 E-value=4.9 Score=39.11 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=30.6
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.++| +++.|.|. |.+|..+++.|.+. |++|++..|+
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~ 42 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARN 42 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 3677 99999997 79999999999988 9888776654
No 475
>PRK09414 glutamate dehydrogenase; Provisional
Probab=82.17 E-value=3.3 Score=46.35 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.8
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg 146 (582)
..++| ++|+|.|+|++|...|+.|.+. |.+|+..
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVav 261 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTC 261 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEE
Confidence 45889 9999999999999999999888 8877544
No 476
>PLN02740 Alcohol dehydrogenase-like
Probab=82.15 E-value=7.9 Score=41.32 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=46.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHHhhhc-----cC
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~-~ViVg~r~~sks~~~A~~~G~~~~-d~t~--~~~~Eav~-----~A 179 (582)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ .+...+.+++.|...- +..- .+..+.+. ..
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGVDI-NPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEEcC-ChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 87 4654443 4455788888886310 1000 01222221 37
Q ss_pred CeEEEeccc
Q 007987 180 DLVLLLISD 188 (582)
Q Consensus 180 DIVILaVPd 188 (582)
|+||-++-.
T Consensus 270 dvvid~~G~ 278 (381)
T PLN02740 270 DYSFECAGN 278 (381)
T ss_pred CEEEECCCC
Confidence 888888774
No 477
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.09 E-value=4.4 Score=44.36 Aligned_cols=67 Identities=28% Similarity=0.307 Sum_probs=43.3
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----HHHHHcCceecCCCcCCH---HhhhccCCeEEEe
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLLL 185 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~----~~A~~~G~~~~d~t~~~~---~Eav~~ADIVILa 185 (582)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... +.-++.|+...-+...+. .+...+.|+||..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999998 998877665432212 123355765311111111 1356788998883
No 478
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.96 E-value=4.9 Score=41.05 Aligned_cols=71 Identities=18% Similarity=0.126 Sum_probs=44.7
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH--HHHHH-c----CceecCCCcC---CHHhhhcc
Q 007987 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-A----GFTEENGTLG---DIYETISG 178 (582)
Q Consensus 110 gikkIgIIG-~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~--~~A~~-~----G~~~~d~t~~---~~~Eav~~ 178 (582)
| ++|.|.| .|-+|..++..|.+. |++|++..|+..... ..... . .+....+.+. ...+++++
T Consensus 4 ~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (322)
T PLN02662 4 G-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDG 76 (322)
T ss_pred C-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcC
Confidence 5 8999999 699999999999998 998876666533211 11111 1 1110011122 35567888
Q ss_pred CCeEEEecc
Q 007987 179 SDLVLLLIS 187 (582)
Q Consensus 179 ADIVILaVP 187 (582)
.|+||.+..
T Consensus 77 ~d~Vih~A~ 85 (322)
T PLN02662 77 CEGVFHTAS 85 (322)
T ss_pred CCEEEEeCC
Confidence 999888764
No 479
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=81.71 E-value=7.1 Score=40.51 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=56.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC--C---HHhhhccCCeEE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG--D---IYETISGSDLVL 183 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~--~---~~Eav~~ADIVI 183 (582)
+| .+|.|.|.|.+|.+.++.++.. |.++++..+. ....+.+.+.|+.. .+. + ..+.-...|+|+
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~---vi~~~~~~~~~~~~~~~d~v~ 237 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADE---FIATKDPEAMKKAAGSLDLII 237 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcE---EecCcchhhhhhccCCceEEE
Confidence 56 7899999999999999988887 8877665544 34466677777531 111 1 112234579999
Q ss_pred EeccchhHHHHHHHHHhcCCCCcEEEE
Q 007987 184 LLISDAAQADNYEKIFSCMKPNSILGL 210 (582)
Q Consensus 184 LaVPd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (582)
-+++... .+.+....++++..++.
T Consensus 238 ~~~g~~~---~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 238 DTVSASH---DLDPYLSLLKPGGTLVL 261 (337)
T ss_pred ECCCCcc---hHHHHHHHhcCCCEEEE
Confidence 8888652 23444555655544443
No 480
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.66 E-value=5.2 Score=39.35 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|..
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 567 99999996 89999999999998 98887666653
No 481
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.60 E-value=5.4 Score=38.84 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.4
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
+++ ++|.|+|. |.+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 89999999999988 99887766653
No 482
>PRK01581 speE spermidine synthase; Validated
Probab=81.60 E-value=8.7 Score=42.13 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=56.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---------CceecCCC----cCCHHhhh--
Q 007987 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYETI-- 176 (582)
Q Consensus 112 kkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~---------G~~~~d~t----~~~~~Eav-- 176 (582)
++|.|||+| .|.++...|+.. +..-++....++.-.+.|++. ++. |.. ..|..+.+
T Consensus 152 krVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHHHHh
Confidence 899999988 555555555443 343345555566667777752 110 000 23333322
Q ss_pred --ccCCeEEEeccchhH--------HHHHHHHHhcCCCCcEEEEecC
Q 007987 177 --SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (582)
Q Consensus 177 --~~ADIVILaVPd~a~--------~~Vl~eI~~~Lk~GaiL~~a~G 213 (582)
..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999998876422 4467788999999988765444
No 483
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.51 E-value=3.6 Score=45.21 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred ccccCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHHh
Q 007987 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (582)
Q Consensus 106 ~~l~gikkIgIIG~----------GsmG~AiA~nLrds~~~~g~G-~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~E 174 (582)
..++| ++|+|.|+ .+-...+++.|++. | .+|.+++..-.. .......... ..+.+|
T Consensus 316 ~~~~~-~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~------gg~~v~~~DP~~~~-~~~~~~~~~~-----~~~~~~ 382 (415)
T PRK11064 316 KRASE-VKIACFGLAFKPNIDDLRESPAMEIAELIAQW------HSGETLVVEPNIHQ-LPKKLDGLVT-----LVSLDE 382 (415)
T ss_pred cCcCC-CEEEEEeeEECCCCcchhhChHHHHHHHHHhc------CCcEEEEECCCCCc-hhhhccCcee-----eCCHHH
Confidence 34678 99999998 45667788888877 7 787766553221 1111111222 457889
Q ss_pred hhccCCeEEEeccchhHHH
Q 007987 175 TISGSDLVLLLISDAAQAD 193 (582)
Q Consensus 175 av~~ADIVILaVPd~a~~~ 193 (582)
++++||+|+++|+-....+
T Consensus 383 ~~~~ad~vvi~t~~~~~~~ 401 (415)
T PRK11064 383 ALATADVLVMLVDHSQFKA 401 (415)
T ss_pred HHhCCCEEEECCCCHHhcc
Confidence 9999999999999887754
No 484
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.50 E-value=6.1 Score=39.43 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=51.3
Q ss_pred ccCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 108 l~gikkIgIIG~G---smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 5 l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl--- 64 (252)
T PRK06079 5 LSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV--- 64 (252)
T ss_pred cCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC---
Confidence 678 999999985 7999999999988 9998777654 2211111111 1 00000 112332
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
+.++.+.++++++.....+=.+|+..+|+
T Consensus 65 -~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 -ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred -CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 44555667777776544332356777776
No 485
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=81.23 E-value=2.3 Score=44.12 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.1
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~Vi 144 (582)
..++| ++|+|.|+|++|...|+-|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56789 9999999999999999999988 98876
No 486
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=81.21 E-value=3.9 Score=45.24 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred cccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007987 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (582)
Q Consensus 107 ~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~s 151 (582)
.|+| ++|+|=|+||.|.-.|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 988877665543
No 487
>PRK09186 flagellin modification protein A; Provisional
Probab=81.18 E-value=6 Score=38.86 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.5
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
++| |+|.|.|. |.+|.+++..|.+. |++|++..|+
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~ 37 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADID 37 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecC
Confidence 567 99999996 79999999999988 9888766554
No 488
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=81.16 E-value=5.5 Score=42.90 Aligned_cols=70 Identities=14% Similarity=-0.002 Sum_probs=46.0
Q ss_pred c-cCCCEEEEEccc-------hhHHHHHHHHHHhhhhhcCCceEEEEec-CC----cccHHH----HHHcCceecCCCcC
Q 007987 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (582)
Q Consensus 108 l-~gikkIgIIG~G-------smG~AiA~nLrds~~~~g~G~~ViVg~r-~~----sks~~~----A~~~G~~~~d~t~~ 170 (582)
+ +| +||+|+|.| ++..+++..+... |+++.+... +. ..-.+. +.+.|... ....
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSL--TVSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 6 78 899776543 6788888877776 888877665 31 111222 34456322 0146
Q ss_pred CHHhhhccCCeEEEec
Q 007987 171 DIYETISGSDLVLLLI 186 (582)
Q Consensus 171 ~~~Eav~~ADIVILaV 186 (582)
++++++++||+|....
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999854
No 489
>PRK06138 short chain dehydrogenase; Provisional
Probab=81.13 E-value=7.6 Score=37.94 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=29.8
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
|+| |+|.|+|. |.+|.++++.|.+. |.+|++..|+
T Consensus 3 ~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~ 38 (252)
T PRK06138 3 LAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRD 38 (252)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCC
Confidence 577 99999996 79999999999988 8887766664
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=80.82 E-value=2.6 Score=42.82 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 113 kIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
.|.|||.|.-|.+.|..|.+. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 689999999999999999999 99998887753
No 491
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=80.56 E-value=4.5 Score=42.88 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=46.6
Q ss_pred cccCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHH----HHHHcCceecCCCcCCHHhhhc
Q 007987 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETIS 177 (582)
Q Consensus 107 ~l~gikkIgIIG~G-smG~AiA~nLrds~~~~g~G~~ViVg~r~~s----ks~~----~A~~~G~~~~d~t~~~~~Eav~ 177 (582)
.++| +||++||-+ ++..|++..+... |+++.+.-...- ...+ .+++.|.... ...+ .++++
T Consensus 144 ~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~~ 213 (302)
T PRK14805 144 DVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAIE 213 (302)
T ss_pred CcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHHC
Confidence 4788 999999975 7778888888776 888777654321 1112 2334464321 1244 46899
Q ss_pred cCCeEEEec
Q 007987 178 GSDLVLLLI 186 (582)
Q Consensus 178 ~ADIVILaV 186 (582)
++|+|...+
T Consensus 214 ~aDvvy~~~ 222 (302)
T PRK14805 214 GHDAIYTDT 222 (302)
T ss_pred CCCEEEeec
Confidence 999999865
No 492
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=80.43 E-value=7.5 Score=38.70 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=29.5
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
++| |++.|+|. |-+|.++++.|.+. |.+|++..|+
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~ 38 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKS 38 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCC
Confidence 567 89999996 68999999999998 9988776664
No 493
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.39 E-value=8.3 Score=39.11 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=50.4
Q ss_pred ccCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHHhhhccCCeEEE
Q 007987 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (582)
Q Consensus 108 l~gikkIgIIG~G---smG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~d~t~~~~~Eav~~ADIVIL 184 (582)
++| |++.|.|.+ -+|.++|+.|.+. |.+|++..++ .+..+.+.+. .. . .... ..-.+|+
T Consensus 4 l~~-k~~lITGas~~~GIG~aia~~la~~------G~~vil~~r~-~~~~~~~~~~--~~-~--~~~~--~~~~~Dl--- 65 (262)
T PRK07984 4 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQN-DKLKGRVEEF--AA-Q--LGSD--IVLPCDV--- 65 (262)
T ss_pred cCC-CEEEEeCCCCCccHHHHHHHHHHHC------CCEEEEEecc-hhHHHHHHHH--Hh-c--cCCc--eEeecCC---
Confidence 678 999999997 4999999999988 9888776554 2212222211 10 0 0000 0111332
Q ss_pred eccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 007987 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (582)
Q Consensus 185 aVPd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (582)
..++.+..+++++.....+=.+|+..+|+
T Consensus 66 -~~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 66 -AEDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred -CCHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 34455566777765544222367777775
No 494
>PRK10083 putative oxidoreductase; Provisional
Probab=80.37 E-value=15 Score=37.76 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred ccCCCEEEEEccchhHHHHHHHHHH-hhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHHhhhc----cCCe
Q 007987 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (582)
Q Consensus 108 l~gikkIgIIG~GsmG~AiA~nLrd-s~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~Eav~----~ADI 181 (582)
-.| .+|.|+|.|.+|.+.++.++. . |..+++.....+...+.+.+.|+..- +..-.+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999998887774 5 77655555554555777788886310 100012233332 2468
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
||-++.... .+.+....++++-.++
T Consensus 232 vid~~g~~~---~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 232 IIDAACHPS---ILEEAVTLASPAARIV 256 (339)
T ss_pred EEECCCCHH---HHHHHHHHhhcCCEEE
Confidence 887776321 2344444555544443
No 495
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.25 E-value=8.6 Score=39.34 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=52.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCcee-cCCCcCCHHh----hhccCCeE
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYE----TISGSDLV 182 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~-ViVg~r~~sks~~~A~~~G~~~-~d~t~~~~~E----av~~ADIV 182 (582)
.| .+|.|+|.|.+|.+.++.++.. |.+ +++..+ +++..+.+.+.|... .+..-.+..+ .-+..|+|
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEE
Confidence 56 8999999999999999998887 887 544433 344456666666521 0100011110 12458999
Q ss_pred EEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 183 LLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 183 ILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
+-+++.. ..+.+....|+++..++
T Consensus 231 ~~~~~~~---~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 231 IEATGVP---KTLEQAIEYARRGGTVL 254 (334)
T ss_pred EECCCCh---HHHHHHHHHHhcCCEEE
Confidence 9888632 23444444555554443
No 496
>PRK14031 glutamate dehydrogenase; Provisional
Probab=80.13 E-value=5 Score=44.92 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred ccccCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE
Q 007987 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (582)
Q Consensus 106 ~~l~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViV 145 (582)
..|+| ++|+|.|+|+.|...|+.|.+. |.+|++
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVa 256 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVT 256 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEE
Confidence 45899 9999999999999999999998 988765
No 497
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.03 E-value=9 Score=39.90 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=55.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHH----hhh--ccCCe
Q 007987 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (582)
Q Consensus 109 ~gikkIgIIG~GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~sks~~~A~~~G~~~~-d~t~~~~~----Eav--~~ADI 181 (582)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +..-.+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999988887 88544455544556788888886310 10001111 122 24788
Q ss_pred EEEeccchhHHHHHHHHHhcCCCCcEEE
Q 007987 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (582)
Q Consensus 182 VILaVPd~a~~~Vl~eI~~~Lk~GaiL~ 209 (582)
|+-++... ..+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88877743 23444455555555443
No 498
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.84 E-value=5.4 Score=39.43 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.3
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
++| |++.|.|. |.+|.++++.|.+. |.+|++..|+
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999997 78999999999998 9988776664
No 499
>PRK12828 short chain dehydrogenase; Provisional
Probab=79.69 E-value=15 Score=35.39 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=30.3
Q ss_pred ccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007987 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (582)
Q Consensus 108 l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~~ 150 (582)
++| |+|.|+|. |.+|.++++.|.+. |.+|++..|+.
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 567 99999995 89999999999988 88877766653
No 500
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=79.53 E-value=6.3 Score=38.92 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=30.7
Q ss_pred cccCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007987 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (582)
Q Consensus 107 ~l~gikkIgIIG~-GsmG~AiA~nLrds~~~~g~G~~ViVg~r~ 149 (582)
.|+| |+|.|.|. |.+|.++++.|.+. |.+|++..|+
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3678 99999995 89999999999988 9988776654
Done!