RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007987
(582 letters)
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 174 bits (443), Expect = 9e-50
Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 33/335 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 348
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV + +I +
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK-LIVDL 224
Query: 349 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 408
I G+ + + S + + + +++ G + L
Sbjct: 225 IYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWAL------ 278
Query: 409 EKE-GLPAF-PMGKID-QTRMWKVGERVRSTRPAG 440
E E G PAF K + + + KVG+ +R+ PAG
Sbjct: 279 ENEAGKPAFNTARKYESEHEIEKVGKELRAMVPAG 313
Score = 46.6 bits (111), Expect = 2e-05
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 451 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 510
G AL+ A + L + G+ E+V E + + ++ G++ M D S TA G+
Sbjct: 187 GGLTALIKAGFDTLVEAGYQPELAYFETVHE-LKLIVDLIYEGGITGMRDRISNTAEYGA 245
Query: 511 RKWAPRFDYIL 521
L
Sbjct: 246 LTRRRIIKEEL 256
>gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 338
Score = 173 bits (442), Expect = 2e-49
Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 56/345 (16%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 344
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY EC+ +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYF---ECLHEL 233
Query: 345 --ISKIISTQGMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSE 396
I +I G+ + S S + E+ + A M+ + +D+ +G
Sbjct: 234 KLIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMK---KVLKDIQSGEF 288
Query: 397 IRSVVL---AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 438
+ +L AGR E + + + KVG+ +R P
Sbjct: 289 AKEWILENQAGRPKLEAL------REETAEHEIEKVGKELRKMMP 327
Score = 38.3 bits (90), Expect = 0.008
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 455 ALMMAQIEILRKKGHS----YSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 510
AL+ A E L + G+ Y E ++E + + ++ G++ M + S TA G
Sbjct: 206 ALIKAGFETLVEAGYQPELAYFECLHE-----LKLIVDLIYEGGITNMRYSISNTAEYGD 260
Query: 511 RKWAPR 516
PR
Sbjct: 261 YTRGPR 266
>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 165
Score = 141 bits (359), Expect = 1e-39
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
>gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.
Length = 330
Score = 146 bits (371), Expect = 3e-39
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 32/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 341
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
>gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 146
Score = 125 bits (317), Expect = 5e-34
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 451 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 510
G L+ A E L + G+S EI + + + ++ G+S M D+ STTA G+
Sbjct: 18 GGLQGLIKAGFETLVEAGYS-PEIAYFETLHELKLIVDLIYEGGLSGMRDSISTTAEYGA 76
Query: 511 RKWAPRFD----YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISV 566
W PR IL ++ L + N L+ N +P + ++R V
Sbjct: 77 YLWGPRIITEATKILMKEILKDIQNGTFAKEWLLENSAGNPR--LNKERKEIREHPIEKV 134
Query: 567 PPDADFVRPELR 578
+ PEL+
Sbjct: 135 GKKLRKLMPELK 146
Score = 61.5 bits (150), Expect = 2e-11
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 294 LEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 352
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 353 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---A 403
G+ + +S S E+ + + + M+ E +D+ G+ + +L A
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLENSA 114
Query: 404 GRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 438
G KE +I + + KVG+++R P
Sbjct: 115 GNPRLNKE------RKEIREHPIEKVGKKLRKLMP 143
>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional.
Length = 335
Score = 112 bits (282), Expect = 2e-27
Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 37/330 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 347
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 348 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 407
++ G+ + +S S D EF + S E E + EI+ A +
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLT---EIQQGEFAKKWI 290
Query: 408 YEKE-GLPAF-PMGKIDQT-RMWKVGERVR 434
E + G P + M K +Q ++ KVGE +R
Sbjct: 291 LENQAGRPTYNAMKKAEQNHQLEKVGEELR 320
>gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.
Length = 487
Score = 80.4 bits (199), Expect = 6e-16
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 27/206 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGER-ILLG 310
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal
structure and biogenesis].
Length = 234
Score = 32.7 bits (75), Expect = 0.40
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 135 AEAKSDIVVKVGLRKGSRSFAEA------------RAAGFTEENGTLGDIYETISGSDLV 182
AE + V+K F A +A G + G + GS +
Sbjct: 142 AEEQVQEVLKALRPIIPIRFERAKVAVKIPVEYAGKAYGLLRKFGEIKKEEWQEDGSWIC 201
Query: 183 LLLISDAAQADNYEKI 198
+L I Q + YE +
Sbjct: 202 VLEIPAGNQDEFYELL 217
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 32.7 bits (75), Expect = 0.67
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 111 INQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
++ VIG G G + A+ LR+ LA VV V R S A + G +
Sbjct: 3 FGRVVVIGLGLIGGSFAKALRERGLARE----VVAVDRRAKSL--ELAVSLGVIDRGEE- 55
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKP 204
D+ E +SG+D+++L A EK+ + +KP
Sbjct: 56 -DLAEAVSGADVIVL----AVPVLAMEKVLADLKP 85
>gnl|CDD|220610 pfam10165, Ric8, Guanine nucleotide exchange factor synembryn.
Ric8 is involved in the EGL-30 neurotransmitter
signalling pathway. It is a guanine nucleotide exchange
factor that regulates neurotransmitter secretion.
Length = 439
Score = 31.5 bits (72), Expect = 1.3
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 18 SPSSETLKEALKHLNLASFSSTAKSLRALKTTTGRGSALSAWMASET---------ALKT 68
SPS + +EALK L A F S R L G G L+ + + +
Sbjct: 40 SPSEDVRREALKCLCNALFLSPK--ARQLFVDLGLGEGLAERLKEDEETPSDDEFFDSRL 97
Query: 69 PFLLDFETSVFKKDMISLADRDEYIV 94
FLL + +K +I ++
Sbjct: 98 LFLLTALRTDDRKQLIDEHHGLSLLL 123
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B
alpha/beta/delta family [Translation, ribosomal
structure and biogenesis].
Length = 301
Score = 30.8 bits (70), Expect = 1.6
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 20/165 (12%)
Query: 35 SFSSTAKSLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIV 94
TA+ L++++ RG++ W+A A + E ++ + + I
Sbjct: 5 EVDETAEKLKSMEI---RGAS---WIA-IAAAEA-----LEILASDSQAPTVEELIDAIR 52
Query: 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154
L P A + N I + +N R SL +A + + +V
Sbjct: 53 ELSETLVKARPTAVSLGNLIRFVL-RDSSGGDKENRRQSLIKAAQEFIDRVEK------- 104
Query: 155 AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
A+ R A E GD+ T S S VL ++ AA K+
Sbjct: 105 AKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVI 149
>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.
Length = 154
Score = 30.3 bits (69), Expect = 1.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 126 QAQNLRDSLAEAKSDIVVKVGL-----RKGSRSFAEARAAGFT 163
QA LRD++ E K VV +G+ K SR FAE FT
Sbjct: 49 QACGLRDNMDELKKAGVVVLGISTDKPEKLSR-FAEKELLNFT 90
>gnl|CDD|144068 pfam00336, DNA_pol_viral_C, DNA polymerase (viral) C-terminal
domain.
Length = 245
Score = 30.7 bits (69), Expect = 1.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 427 WKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSL 486
WKV +R+ G LG + PFT YAALM I ++ ++S + ++ + L
Sbjct: 30 WKVCQRI-----VGLLGFVAPFTQCGYAALMPLYHCIQSRQAFTFSLLYKSFLLSQYEEL 84
Query: 487 NPFMHARGV 495
P RG
Sbjct: 85 YPVARQRGG 93
>gnl|CDD|224072 COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy
production and conversion].
Length = 195
Score = 29.3 bits (66), Expect = 4.0
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 385 YECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ----------TRMWKVGERVR 434
Y C E G +I VV A R KEGL PM K + + + +R
Sbjct: 89 YTCTERCPRGVKIVEVVKALRNIAVKEGLIE-PMLKAHREVLETVITTGNHAVPINKELR 147
Query: 435 STRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGH 469
+ R A L L T + AL Q+ I++
Sbjct: 148 AKRKALGLDELPETTKKIQEALESVQL-IIKTLIF 181
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 27.9 bits (63), Expect = 4.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
IG+IG G+ G A A+ LA A ++V+ R ++ A A G T
Sbjct: 2 IGIIGAGNMGEALARG----LAAAGHEVVI-ANSRNPEKAAALAEELGV---KATAVSNE 53
Query: 174 ETISGSDLVLLLI 186
E + +D+V L +
Sbjct: 54 EAVEEADVVFLAV 66
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 29.4 bits (66), Expect = 5.9
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 449 TAGVYAALMMAQIEILRKKGHS---YSEIINESVIESVDSLNPFM 490
T G YAA++ AQ I + KG+S Y + +++ +E V S N F+
Sbjct: 250 TIGNYAAVLKAQ-SIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFI 293
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 29.1 bits (66), Expect = 6.3
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I IG G G A NL + E V V R ++ AAG T
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHE------VTVYNRTPEKAAELLAAAGATVA----ASPA 52
Query: 174 ETISGSDLVLLLISDAAQADN----YEKIFSCMKPNSIL 208
E + +D+V+ ++ D A + +KP +I+
Sbjct: 53 EAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIV 91
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 159
Score = 28.3 bits (64), Expect = 6.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 117 IGWGSQGP------AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTE 164
IG GS P AQA+ L +L E D+ V + +R G S EA +A G
Sbjct: 60 IGGGS--PLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDR 115
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 28.9 bits (65), Expect = 7.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 397 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 446
+RSV R+ ++ G+ F M +ID+ + KV E A D GP+H
Sbjct: 173 LRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAED-GPIH 221
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 27.4 bits (62), Expect = 9.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 451 GVYAALMMAQIEILRKKGHSYSEIINE 477
G+ AAL++ EIL + G S SE++ E
Sbjct: 83 GILAALLVL--EILAETGKSLSELLEE 107
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,165,571
Number of extensions: 3025333
Number of successful extensions: 2672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2631
Number of HSP's successfully gapped: 35
Length of query: 582
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 480
Effective length of database: 6,413,494
Effective search space: 3078477120
Effective search space used: 3078477120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)