RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007987
(582 letters)
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 726 bits (1877), Expect = 0.0
Identities = 451/511 (88%), Positives = 480/511 (93%), Gaps = 1/511 (0%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER-ILLG 310
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGER ILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 311 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 370
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 371 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 430
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 374
Query: 431 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM 490
E+VRSTRP DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFM
Sbjct: 375 EKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFM 434
Query: 491 HARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHG 550
HARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHG
Sbjct: 435 HARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHG 494
Query: 551 AIEVCAQLRPTVDISVPPDADFVRPELRQGS 581
AIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct: 495 AIEVCAELRPTVDISVPANADFVRPELRQSS 525
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 160 bits (407), Expect = 1e-44
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 32/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 345
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 346 SKIISTQGMLAVYNSFS 362
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
Score = 32.3 bits (74), Expect = 0.47
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 451 GVYAALMMAQIEILRKKGHS----YSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 506
G L+ A E L + G++ Y E ++E + VD M+ G++ M + S A
Sbjct: 200 GGCVELVKAGFETLVEAGYAPEMAYFECLHE-LKLIVD----LMYEGGIANMNYSISNNA 254
Query: 507 RLGSRKWAPR 516
G P
Sbjct: 255 EYGEYVTGPE 264
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 154 bits (392), Expect = 3e-41
Identities = 92/426 (21%), Positives = 163/426 (38%), Gaps = 61/426 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 341
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 342 TG--IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCM-EILYECYEDVAAGSEIR 398
G I++ + G+ + + S + + +AY+ S + EI+ ++ +I
Sbjct: 256 FGWETITEALKQGGITLMMDRLS--NPAKL-RAYALS--EQLKEIMAPLFQKHMD--DII 308
Query: 399 SVVLAGRRF---YEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAA 455
S + + + + ++ + + + A
Sbjct: 309 SGEFS-SGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKA 367
Query: 456 LMMAQIEILRKKGHS----YSEIINES-VIESVDSLNPFMHARGVSFMVDNCSTTARLGS 510
+ E + G Y E ++E +I ++ + + + M S TA G+
Sbjct: 368 GVELAFETMVDSGIIEESAYYESLHELPLI--ANT----IARKRLYEMNVVISDTAEYGN 421
Query: 511 RKWAPR 516
++
Sbjct: 422 YLFSYA 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 8e-10
Identities = 54/277 (19%), Positives = 84/277 (30%), Gaps = 93/277 (33%)
Query: 325 ENGMNEDLAYKN--------------TVECITGIISKIISTQ-GMLAVYNSFSGEDKKEF 369
E GM DL YK + I I+ L ++ F GE K
Sbjct: 1628 EQGMGMDL-YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH--FGGEKGKRI 1684
Query: 370 EKAYSASYYPCMEILYECYEDVAAGSE-IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWK 428
+ Y +++E D +E I + Y G + T+
Sbjct: 1685 RENY-------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLLSATQ--- 1730
Query: 429 VGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKK----------GHS---YS--- 472
T+PA L A E L+ K GHS Y+
Sbjct: 1731 ------FTQPA-----L--TLME------KAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 473 ---EIIN-ESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWA-----P-RFDYILT 522
++++ ES++E V RG++ + LG + P R +
Sbjct: 1772 SLADVMSIESLVEVV-------FYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 523 QQAL-VAVDNDAPINGDL--ISNFLSDPVHGAIEVCA 556
Q+AL V+ G L I N+ + V A
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVE---NQQYVAA 1856
Score = 55.8 bits (134), Expect = 3e-08
Identities = 102/653 (15%), Positives = 179/653 (27%), Gaps = 240/653 (36%)
Query: 1 MAAATLPFSRPI----PKFSPS---PSS-----ETLKEALKHLNLASFSSTAKSLRALKT 48
M A + RP+ P++ L+E F+ L
Sbjct: 1 MDAYST---RPLTLSHGSLEHVLLVPTASFFIASQLQE--------QFNKI------LPE 43
Query: 49 TTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
T G A + L FL + +S+ + + D + NL F
Sbjct: 44 PT-EGFAADDEPTTPAELVGKFL-GYVSSLVEPSKVGQFD----------QVLNLCLTEF 91
Query: 109 -------NGINQIGVIGWGSQGPAQAQNLRDSLAEA--KSDIVVKVGLRKGSRS-FAEAR 158
N I+ + + L + + I+ K K S S A
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 159 AAG-----------------FTEENGTLGDIYET--------ISGSDLVLL-LISDAAQA 192
G F E L D+Y+T I S L LI A
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 193 DN-YEKIFSCMK----PNSILGLSHGFLLGHLQSMGLDFPKNIGV------IAVCPK-GM 240
+ + + + ++ P++ +LL S L IGV + G
Sbjct: 206 EKVFTQGLNILEWLENPSNTP--DKDYLLSIPISCPL-----IGVIQLAHYVVTAKLLGF 258
Query: 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300
P R Y++G + G+ ++ A+ A + E +
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAI-------AE----------------TDSWESFFV- 294
Query: 301 DIFGERILLGAVHGIVESLFR---RFTENGMNEDLAYKNTVECITGIISKIISTQG---- 353
+V + LF R E N L + + +G
Sbjct: 295 ----------SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-------NEGVPSP 337
Query: 354 MLAVYNSFSGEDKKEFEK--AYSASYYPCMEILYECYEDVAAGSEI------RSVVLAG- 404
ML++ S +++ + + S+ P + + I +++V++G
Sbjct: 338 MLSI----SNLTQEQVQDYVNKTNSHLPAGKQVE-----------ISLVNGAKNLVVSGP 382
Query: 405 -------RRFYEKEGLPAFPMGKIDQTRMWKVGER--VRSTR--PAGDLGPLHPFTAGVY 453
K P+ +DQ+R+ ER S R P PF
Sbjct: 383 PQSLYGLNLTLRKAKAPS----GLDQSRI-PFSERKLKFSNRFLPVAS-----PF----- 427
Query: 454 AALMMAQIEILRKKGHS-YSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRK 512
HS ++ + + + VSF +
Sbjct: 428 ---------------HSHLLVPASDLINKDLVK-------NNVSF------NAKDIQ--- 456
Query: 513 WAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPT--VD 563
P +D T I+ ++ + PV E Q + T +D
Sbjct: 457 -IPVYD---TFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHILD 503
Score = 45.0 bits (106), Expect = 7e-05
Identities = 69/415 (16%), Positives = 109/415 (26%), Gaps = 188/415 (45%)
Query: 16 SPSPSSETLKEA--------LKHLNLASFSSTAKSL--------RALKTTTGRGSAL-SA 58
S +P + L + + LA + TAK L LK TG L +A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 59 --------W----MASETALKTPFLL-----------DFETSVFKKD----------MIS 85
W ++ A+ F + S+ + M+S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 86 LADRDEYIVRGGRDLFNL-LPDA-------FNGINQIGVIGWGSQGPAQAQNLRDSLAEA 137
+++ + V+ + N LP NG + V+ GP Q SL
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVS----GPPQ------SLY-- 387
Query: 138 KSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK 197
+ + LRK A+A SG D Q+ +
Sbjct: 388 ----GLNLTLRK-------AKAP----------------SGLD----------QS----R 406
Query: 198 I-FSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCP---KGMGPSV----RRLYV 249
I FS K S+ FL P + P + P+ + L
Sbjct: 407 IPFSERKLK----FSNRFL-----------P--VAS----PFHSHLLVPASDLINKDLVK 445
Query: 250 QGKEINGAGINSSFAVHQDVDGR----------------ATNVALGWSVALGSPFTFATT 293
N I V+ DG + + W T
Sbjct: 446 NNVSFNAKDIQ--IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI-- 501
Query: 294 LEQEYRSDIFGERILLGAVHGIVESLFRRFTE-------------NGMNEDLAYK 335
L+ FG G G+ L R + ++D +K
Sbjct: 502 LD-------FGP----GGASGL-GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 43.9 bits (103), Expect = 2e-04
Identities = 55/321 (17%), Positives = 93/321 (28%), Gaps = 124/321 (38%)
Query: 120 GSQGPAQAQNLRDSLAEAK------------------SDIV--------VKVGLRKGSR- 152
GSQ +L + A+ DIV + G KG R
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 153 ----------SFAEARAAG---FTEENGTLGDIYETISGSDLVL----------LLISDA 189
+ + + F E N T +L L+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG----LDFPKNIGVIAVCPKG-MGPS- 243
F +K ++ F GH S+G L M
Sbjct: 1743 --------AFEDLKSKGLIPADATF-AGH--SLGEYAAL----------ASLADVMSIES 1781
Query: 244 -VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302
V ++ +G + AV +D GR +N + +A+ P A + QE
Sbjct: 1782 LVEVVFYRGMTMQ-------VAVPRDELGR-SNYGM---IAIN-PGRVAASFSQE----- 1824
Query: 303 FGERILLGAVHGIVESLFRRFTE-------NGMNE------DLAYKNTVECITGIISKII 349
A+ +VE + +R N N+ DL ++ +T ++ I
Sbjct: 1825 --------ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR---ALDTVTNVL-NFI 1872
Query: 350 STQG--MLAVYNSFSGEDKKE 368
Q ++ + S S E+ +
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEG 1893
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 55.1 bits (132), Expect = 2e-08
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 5e-05
Identities = 35/286 (12%), Positives = 83/286 (29%), Gaps = 83/286 (29%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNIGV 232
DN++ + +C K +I+ S L + + FP + +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
Score = 39.1 bits (90), Expect = 0.005
Identities = 47/346 (13%), Positives = 94/346 (27%), Gaps = 105/346 (30%)
Query: 284 LGSPFTFATTLEQEYRSDIFGERILLGAVHGIVESLFRRFTENGMNED---LAYKNTVEC 340
+ S + R +F LL +V+ +F E + + L E
Sbjct: 55 IMSK----DAVSGTLR--LFW--TLLSKQEEMVQ----KFVEEVLRINYKFLMSPIKTEQ 102
Query: 341 I--TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 398
+ + I + L YN D + F K Y+ S L + E+R
Sbjct: 103 RQPSMMTRMYIEQRDRL--YN-----DNQVFAK-YNVSRLQPYLKLRQALL------ELR 148
Query: 399 S---VVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVY-- 453
V++ +G+ GK W + ++
Sbjct: 149 PAKNVLI--------DGVLGS--GK-----TWVALDVCL------SYKVQCKMDFKIFWL 187
Query: 454 --------AALMMAQIEILRKKGHSYSEIINESV-----IESV-DSLNPFMHARGV--SF 497
++ ++L + +++ + S I S+ L + ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 498 MV-DNCSTTARLGSRKWAPR----FDY-----ILTQQALVAVDNDAPINGDLISNFLSDP 547
+V N + F+ + T+ V A + + S
Sbjct: 248 LVLLNV----------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 548 VHGAIEVCAQLRPTVDISV---PPDADFVRP--------ELRQGSN 582
+ EV + L +D P + P +R G
Sbjct: 298 LTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 42.9 bits (100), Expect = 2e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.9 bits (80), Expect = 0.058
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
I IG+G + A L + + LR + + A A E D
Sbjct: 26 TIAFIGFGEAAQSIAGGLGG----RNAARLAAYDLRFNDPAASGALRARAAELGVEPLDD 81
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
I+ +D+VL L+ AA + ++
Sbjct: 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVF 117
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 32.2 bits (73), Expect = 0.35
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G++G G + A L S V V GSR+ R A +
Sbjct: 31 VGILGSGDFARSLATRL------VGSGFKVVV----GSRNP--KRTARLFPSAAQVTFQE 78
Query: 174 ETISGSDLVLLLISDAAQAD 193
E +S +++ + + +
Sbjct: 79 EAVSSPEVIFVAVFREHYSS 98
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 31.7 bits (71), Expect = 0.49
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +G G+ + L+D + + SRS AR G +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYE------IGYIL----SRSIDRARNLA-EVYGGKAATLE 53
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227
+ + +V +++ D + + P
Sbjct: 54 KHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHP 107
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 31.3 bits (71), Expect = 0.79
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G IG+G A A L +A + + A G + +
Sbjct: 27 LGFIGFGEAASAIASGL----RQAGAIDMAAYDAASAESWRPRAEELGVS----CKASVA 78
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
E D++ L++ A + ++ + ++
Sbjct: 79 EVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALY 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.90
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 25 KEALKHL--NLASFS-STAKSLRALKTT 49
K+ALK L +L ++ +A +L A+K T
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIKAT 45
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 1.8
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG G+ A+ L K +V+V SR+ AR E D+
Sbjct: 13 IVLIGAGNLATNLAKALY-----RKGFRIVQVY----SRTEESARELAQKVEAEYTTDLA 63
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213
E + L ++ + D+A A+ + I + +++ + G
Sbjct: 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAG 103
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 29.5 bits (67), Expect = 2.8
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 397 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 446
+R V + + F M ID+ + KV ER P+H
Sbjct: 175 LRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIH 224
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 29.8 bits (67), Expect = 2.8
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 384 LYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLG 443
LY + ++ V+L G K+G AF G DQ + G + S A +
Sbjct: 89 LYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGG-DQRIRGRSGYQYASGDTADTVD 147
Query: 444 PLHPFTAGVYAALMMAQIEILRK 466
+ + I + K
Sbjct: 148 VARAGRLHILE--VQRLIRFMPK 168
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 28.8 bits (65), Expect = 4.6
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 397 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 446
+R V + G+ F M ++D+ + KV E S P+H
Sbjct: 179 LRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIH 228
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 28.7 bits (65), Expect = 5.3
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 397 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 446
+RS+ +R ++ G+ + M ++D+ + ++ E V PLH
Sbjct: 167 VRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKH--LQG-LPLH 213
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 27.2 bits (61), Expect = 5.9
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 15/41 (36%)
Query: 449 TAGVYAALMMAQIEI---------------LRKKGHSYSEI 474
+ + + A+IEI L++KG + E
Sbjct: 6 HHHHHGSAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEY 46
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 28.3 bits (63), Expect = 8.6
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 363 GEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMG 419
+ +EKA ++ IL E Y G+E R VL G + A +G
Sbjct: 542 SANLASYEKAIDIAFTEDSAILVEEY---IEGTEYRFFVLEGDCIAVLLRVAANVVG 595
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,022,889
Number of extensions: 569301
Number of successful extensions: 1278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1246
Number of HSP's successfully gapped: 36
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)