RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007987
(582 letters)
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 412 bits (1060), Expect = e-142
Identities = 255/287 (88%), Positives = 271/287 (94%), Gaps = 1/287 (0%)
Query: 294 LEQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 352
LEQEY+SDIFGER ILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 353 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEG 412
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEG
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEG 120
Query: 413 LPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYS 472
LPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYS
Sbjct: 121 LPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYS 180
Query: 473 EIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDND 532
EIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN
Sbjct: 181 EIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNG 240
Query: 533 APINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 579
APIN DLISNFLSDPVH AI VCAQLRP+VDISV DADFVRPELRQ
Sbjct: 241 APINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 287
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 282 bits (723), Expect = 6e-93
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 144 bits (364), Expect = 7e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
>d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 145
Score = 104 bits (262), Expect = 3e-27
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Query: 295 EQEYRSDIFGER-ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 353
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 354 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 413
Y+ + + E+ + + + G + + G Y
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 414 PAFPMGKIDQTRMWKVGERVRSTRP 438
+ ++GE++R+ P
Sbjct: 122 ---YRRNNAAHPIEQIGEKLRAMMP 143
Score = 40.7 bits (95), Expect = 9e-05
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 451 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 510
G L+ A E L + G++ E + + + M+ G++ M + S A G
Sbjct: 18 GGCVELVKAGFETLVEAGYAPEMAYFE-CLHELKLIVDLMYEGGIANMNYSISNNAEYGE 76
Query: 511 RKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSD 546
P ++ A+ +G+ F+++
Sbjct: 77 YVTGPEVINAESRAAMRNALKRIQ-DGEYAKMFITE 111
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 35.7 bits (81), Expect = 0.007
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFR 116
>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 27.3 bits (60), Expect = 2.0
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 444 PLHPFTAGVYAALMMAQIEILRKKGHSYSEIINE 477
F G+Y+A + +EIL + + +
Sbjct: 77 RWFGFDDGIYSAARL--LEILSQDQRDSEHVFSA 108
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 26.4 bits (57), Expect = 6.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 113 QIGVIGWGSQGPAQAQNLRDS 133
++G IG+G A LR
Sbjct: 2 RVGFIGFGEVAQTLASRLRSR 22
>d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger
[TaxId: 5061]}
Length = 261
Score = 27.1 bits (59), Expect = 6.2
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 311 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGII------SKIISTQGMLAVYNS 360
+ GI E L+ R E AY + + II + G + ++
Sbjct: 2 STQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDT 57
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 26.5 bits (58), Expect = 9.8
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKHL 31
P P F+PS E L +A+
Sbjct: 28 KGGPGSAVSPYPTFNPSSDVEALHKAITVK 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,125,656
Number of extensions: 99701
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 13
Length of query: 582
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,171,896
Effective search space: 576572832
Effective search space used: 576572832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)