Query 007989
Match_columns 582
No_of_seqs 683 out of 4121
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 18:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 8E-100 2E-104 832.9 43.6 497 66-582 2-501 (596)
2 KOG0734 AAA+-type ATPase conta 100.0 2.2E-94 4.7E-99 759.6 29.4 359 221-582 294-653 (752)
3 KOG0731 AAA+-type ATPase conta 100.0 9.2E-90 2E-94 764.1 41.6 486 93-582 163-662 (774)
4 CHL00176 ftsH cell division pr 100.0 7.9E-87 1.7E-91 748.3 49.8 488 91-582 47-534 (638)
5 PRK10733 hflB ATP-dependent me 100.0 3.3E-78 7.1E-83 684.1 51.8 501 62-582 3-504 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 3E-71 6.5E-76 612.1 40.5 402 173-582 2-405 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 2.4E-64 5.2E-69 515.0 17.0 259 219-477 139-398 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 6.3E-56 1.4E-60 520.9 31.0 292 256-560 1622-1968(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-51 2.6E-56 447.8 23.9 250 222-474 425-677 (693)
10 KOG0727 26S proteasome regulat 100.0 1.3E-50 2.7E-55 396.4 22.9 325 142-475 75-400 (408)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 5.9E-49 1.3E-53 421.2 24.3 247 225-474 505-772 (802)
12 KOG0729 26S proteasome regulat 100.0 4.6E-49 9.9E-54 387.9 19.6 269 210-478 156-425 (435)
13 KOG0726 26S proteasome regulat 100.0 7.6E-50 1.7E-54 397.4 13.2 300 171-475 130-430 (440)
14 KOG0728 26S proteasome regulat 100.0 3.5E-48 7.6E-53 378.9 21.6 258 221-478 137-395 (404)
15 KOG0652 26S proteasome regulat 100.0 3.3E-48 7.2E-53 380.9 19.0 255 220-474 160-415 (424)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-46 9E-51 399.3 20.7 228 224-454 183-414 (802)
17 PTZ00454 26S protease regulato 100.0 1.4E-43 3E-48 380.1 27.9 254 221-474 135-389 (398)
18 COG1223 Predicted ATPase (AAA+ 100.0 8.7E-44 1.9E-48 349.8 19.6 242 223-471 113-355 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 2.1E-43 4.5E-48 363.2 20.0 245 224-473 205-471 (491)
20 KOG0736 Peroxisome assembly fa 100.0 3.8E-43 8.2E-48 384.5 23.2 249 223-473 664-934 (953)
21 PRK03992 proteasome-activating 100.0 2.7E-42 5.9E-47 370.5 27.8 259 220-478 120-379 (389)
22 PTZ00361 26 proteosome regulat 100.0 5.2E-42 1.1E-46 370.6 23.6 254 221-474 173-427 (438)
23 KOG0651 26S proteasome regulat 100.0 1.9E-41 4.1E-46 340.6 13.1 252 222-473 123-375 (388)
24 COG0464 SpoVK ATPases of the A 100.0 5.6E-40 1.2E-44 363.1 24.2 245 224-471 235-483 (494)
25 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-39 3.6E-44 346.3 26.8 252 220-471 111-363 (364)
26 KOG0735 AAA+-type ATPase [Post 100.0 4.6E-40 1E-44 357.3 22.5 228 224-454 660-888 (952)
27 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-39 3.5E-44 374.7 26.0 247 225-473 447-712 (733)
28 KOG0739 AAA+-type ATPase [Post 100.0 3.2E-40 7E-45 329.6 13.2 227 222-454 124-353 (439)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 9E-39 1.9E-43 350.0 24.6 243 225-474 222-466 (489)
30 KOG0737 AAA+-type ATPase [Post 100.0 1.6E-38 3.5E-43 327.2 17.5 225 225-454 86-314 (386)
31 TIGR03689 pup_AAA proteasome A 100.0 9.7E-36 2.1E-40 326.1 24.7 255 220-476 171-483 (512)
32 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-34 2.4E-39 315.7 18.0 279 226-518 180-469 (693)
33 PLN00020 ribulose bisphosphate 100.0 3.6E-33 7.7E-38 290.4 23.4 263 226-501 110-394 (413)
34 KOG0741 AAA+-type ATPase [Post 100.0 3.9E-34 8.4E-39 303.2 15.0 280 223-503 211-531 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-32 5.1E-37 315.3 28.6 248 225-475 172-439 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 1.5E-32 3.3E-37 313.7 19.1 252 224-478 258-532 (1080)
37 KOG0740 AAA+-type ATPase [Post 100.0 5.5E-31 1.2E-35 279.8 15.3 244 224-473 146-406 (428)
38 PF01434 Peptidase_M41: Peptid 99.9 1.5E-27 3.4E-32 236.3 9.4 123 460-582 1-124 (213)
39 CHL00181 cbbX CbbX; Provisiona 99.9 3.2E-22 7E-27 206.8 21.2 212 230-454 22-257 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 3E-22 6.5E-27 206.9 20.0 210 231-454 22-256 (284)
41 TIGR02881 spore_V_K stage V sp 99.9 1.4E-21 3.1E-26 199.3 20.3 211 229-454 4-241 (261)
42 PF00004 AAA: ATPase family as 99.9 9E-22 2E-26 177.6 13.5 130 267-400 1-132 (132)
43 KOG0743 AAA+-type ATPase [Post 99.9 2E-21 4.4E-26 205.8 17.7 208 227-443 197-412 (457)
44 KOG0742 AAA+-type ATPase [Post 99.9 5E-21 1.1E-25 198.9 17.5 232 226-468 350-609 (630)
45 PRK00080 ruvB Holliday junctio 99.8 2.8E-19 6.1E-24 188.3 19.8 220 223-471 17-250 (328)
46 PF05496 RuvB_N: Holliday junc 99.8 6.6E-19 1.4E-23 173.5 18.8 195 225-448 18-226 (233)
47 TIGR00635 ruvB Holliday juncti 99.8 8E-19 1.7E-23 182.4 19.9 213 229-470 2-228 (305)
48 KOG0735 AAA+-type ATPase [Post 99.8 8.8E-19 1.9E-23 192.2 20.1 261 231-502 408-683 (952)
49 COG0464 SpoVK ATPases of the A 99.8 1.1E-18 2.4E-23 193.5 20.9 220 250-474 4-229 (494)
50 KOG0736 Peroxisome assembly fa 99.8 6.4E-18 1.4E-22 187.0 22.5 208 260-473 427-655 (953)
51 TIGR02902 spore_lonB ATP-depen 99.8 2.8E-18 6E-23 191.5 19.3 219 220-469 54-330 (531)
52 KOG0744 AAA+-type ATPase [Post 99.8 7.9E-19 1.7E-23 178.4 13.4 237 230-470 141-413 (423)
53 TIGR02639 ClpA ATP-dependent C 99.8 1.7E-18 3.7E-23 200.2 16.9 224 226-473 177-431 (731)
54 COG2256 MGS1 ATPase related to 99.8 7.1E-18 1.5E-22 176.5 17.5 204 226-472 19-239 (436)
55 TIGR00362 DnaA chromosomal rep 99.8 7.3E-18 1.6E-22 182.5 17.9 241 226-502 105-358 (405)
56 PRK00149 dnaA chromosomal repl 99.8 3.2E-18 7E-23 187.7 15.1 296 225-566 116-430 (450)
57 COG2255 RuvB Holliday junction 99.8 1.6E-17 3.5E-22 166.9 18.4 219 226-473 21-253 (332)
58 TIGR00763 lon ATP-dependent pr 99.8 1.2E-17 2.6E-22 194.2 18.4 201 231-451 320-554 (775)
59 PRK11034 clpA ATP-dependent Cl 99.8 6.8E-18 1.5E-22 194.1 16.1 225 226-474 181-436 (758)
60 PRK14956 DNA polymerase III su 99.8 2.5E-17 5.5E-22 179.2 19.4 213 221-468 8-243 (484)
61 PRK14962 DNA polymerase III su 99.7 5.6E-17 1.2E-21 178.2 19.2 206 222-469 5-240 (472)
62 PRK07003 DNA polymerase III su 99.7 9.8E-17 2.1E-21 180.7 19.8 210 221-465 6-238 (830)
63 PRK14961 DNA polymerase III su 99.7 1.6E-16 3.4E-21 169.8 20.2 214 221-469 6-242 (363)
64 PRK14088 dnaA chromosomal repl 99.7 2.1E-16 4.6E-21 172.7 21.4 298 225-565 99-413 (440)
65 PRK12402 replication factor C 99.7 2.6E-16 5.7E-21 165.2 21.2 214 219-469 3-247 (337)
66 PRK12323 DNA polymerase III su 99.7 5.9E-17 1.3E-21 180.4 16.8 210 221-465 6-243 (700)
67 PRK13342 recombination factor 99.7 1.3E-16 2.9E-21 173.2 19.2 202 223-471 4-219 (413)
68 PRK06645 DNA polymerase III su 99.7 1.8E-16 4E-21 175.0 20.3 217 220-468 10-253 (507)
69 PRK14960 DNA polymerase III su 99.7 1.3E-16 2.9E-21 178.0 19.2 206 222-468 6-240 (702)
70 PRK04195 replication factor C 99.7 1.6E-16 3.5E-21 175.7 19.9 211 220-467 3-221 (482)
71 TIGR02928 orc1/cdc6 family rep 99.7 4.1E-16 8.8E-21 165.9 22.0 222 228-471 12-274 (365)
72 PRK14958 DNA polymerase III su 99.7 1.6E-16 3.5E-21 176.2 18.2 207 221-468 6-241 (509)
73 KOG2004 Mitochondrial ATP-depe 99.7 8.9E-17 1.9E-21 176.9 15.1 177 219-415 399-597 (906)
74 PRK06893 DNA replication initi 99.7 8.2E-16 1.8E-20 154.2 19.8 213 223-468 8-227 (229)
75 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.1E-15 2.4E-20 151.6 20.3 204 226-468 10-225 (226)
76 PLN03025 replication factor C 99.7 5.8E-16 1.3E-20 162.6 19.0 204 221-467 3-219 (319)
77 PRK14964 DNA polymerase III su 99.7 4.9E-16 1.1E-20 170.5 18.9 204 223-467 5-237 (491)
78 PRK14949 DNA polymerase III su 99.7 6.7E-16 1.4E-20 176.9 19.8 209 222-465 7-238 (944)
79 PRK07994 DNA polymerase III su 99.7 6.1E-16 1.3E-20 174.4 19.1 206 222-468 7-241 (647)
80 PRK14086 dnaA chromosomal repl 99.7 1.4E-15 3.1E-20 169.5 21.7 295 225-564 282-594 (617)
81 PRK08691 DNA polymerase III su 99.7 6E-16 1.3E-20 174.1 18.8 213 221-468 6-241 (709)
82 PRK14087 dnaA chromosomal repl 99.7 4.7E-16 1E-20 170.3 17.0 269 265-568 142-431 (450)
83 PRK00411 cdc6 cell division co 99.7 2.3E-15 4.9E-20 161.9 21.8 222 228-472 27-283 (394)
84 PHA02544 44 clamp loader, smal 99.7 2.3E-15 5E-20 157.2 21.1 209 218-466 8-226 (316)
85 PRK08903 DnaA regulatory inact 99.7 2.4E-15 5.2E-20 150.0 20.1 202 224-469 11-224 (227)
86 PRK14963 DNA polymerase III su 99.7 1.6E-15 3.5E-20 167.9 20.4 203 223-467 6-236 (504)
87 PRK14951 DNA polymerase III su 99.7 1.1E-15 2.5E-20 171.8 19.1 213 221-468 6-246 (618)
88 PRK13341 recombination factor 99.7 1.8E-15 3.9E-20 173.4 20.9 211 221-470 18-246 (725)
89 TIGR03345 VI_ClpV1 type VI sec 99.7 1.5E-15 3.2E-20 177.7 19.7 217 226-467 182-427 (852)
90 PRK05563 DNA polymerase III su 99.7 2.2E-15 4.8E-20 169.0 20.1 205 222-467 7-240 (559)
91 TIGR02397 dnaX_nterm DNA polym 99.7 1.9E-15 4.2E-20 160.0 18.4 207 221-468 4-239 (355)
92 PRK14969 DNA polymerase III su 99.7 2.1E-15 4.5E-20 168.2 18.7 212 222-468 7-241 (527)
93 PRK12422 chromosomal replicati 99.7 6.7E-15 1.5E-19 160.9 21.5 305 225-566 105-424 (445)
94 PRK08084 DNA replication initi 99.7 8E-15 1.7E-19 147.6 20.4 207 224-468 15-233 (235)
95 COG3829 RocR Transcriptional r 99.7 3.4E-16 7.3E-21 169.5 10.7 217 225-468 239-495 (560)
96 COG0466 Lon ATP-dependent Lon 99.7 7.1E-16 1.5E-20 170.8 13.2 176 219-414 311-508 (782)
97 PRK14959 DNA polymerase III su 99.6 3.2E-15 6.9E-20 167.4 18.4 207 221-468 6-241 (624)
98 PRK10865 protein disaggregatio 99.6 2.4E-15 5.1E-20 176.3 18.0 201 226-451 173-401 (857)
99 PRK07133 DNA polymerase III su 99.6 4.3E-15 9.4E-20 168.5 19.2 214 220-468 7-240 (725)
100 PRK14952 DNA polymerase III su 99.6 5.6E-15 1.2E-19 165.7 19.0 211 223-467 5-240 (584)
101 PRK14957 DNA polymerase III su 99.6 5.6E-15 1.2E-19 164.3 18.9 205 222-467 7-240 (546)
102 CHL00095 clpC Clp protease ATP 99.6 4.6E-15 9.9E-20 173.7 18.9 163 226-413 174-353 (821)
103 PRK05896 DNA polymerase III su 99.6 4.9E-15 1.1E-19 165.2 18.1 212 220-467 5-240 (605)
104 PRK14970 DNA polymerase III su 99.6 4.8E-15 1E-19 158.4 17.4 215 220-469 6-231 (367)
105 PRK07764 DNA polymerase III su 99.6 5E-15 1.1E-19 171.8 18.5 212 222-467 6-242 (824)
106 PRK14965 DNA polymerase III su 99.6 6.4E-15 1.4E-19 166.0 18.5 205 222-467 7-240 (576)
107 PRK14953 DNA polymerase III su 99.6 1.1E-14 2.3E-19 160.9 19.4 213 221-468 6-241 (486)
108 KOG2028 ATPase related to the 99.6 3.7E-15 7.9E-20 153.8 14.1 205 225-470 132-367 (554)
109 PRK00440 rfc replication facto 99.6 2E-14 4.4E-19 149.6 20.0 208 219-469 5-224 (319)
110 PRK07940 DNA polymerase III su 99.6 9.9E-15 2.1E-19 157.1 17.9 182 229-440 3-211 (394)
111 PRK08727 hypothetical protein; 99.6 4.4E-14 9.6E-19 142.0 21.5 210 223-470 11-230 (233)
112 PRK08451 DNA polymerase III su 99.6 1.6E-14 3.5E-19 160.0 19.9 206 221-467 4-238 (535)
113 COG0593 DnaA ATPase involved i 99.6 2.6E-14 5.7E-19 152.8 20.0 300 224-564 80-390 (408)
114 PRK14955 DNA polymerase III su 99.6 1.1E-14 2.3E-19 157.5 17.1 217 221-468 6-254 (397)
115 PRK09111 DNA polymerase III su 99.6 1.8E-14 4E-19 162.2 19.5 214 220-468 13-254 (598)
116 PRK06647 DNA polymerase III su 99.6 2.4E-14 5.3E-19 160.4 19.5 212 222-468 7-241 (563)
117 TIGR03346 chaperone_ClpB ATP-d 99.6 1.3E-14 2.8E-19 170.5 17.8 202 226-452 168-397 (852)
118 PRK05342 clpX ATP-dependent pr 99.6 3E-14 6.5E-19 154.1 18.6 217 233-452 73-379 (412)
119 PRK05642 DNA replication initi 99.6 8.8E-14 1.9E-18 140.0 20.8 214 222-468 10-232 (234)
120 KOG0989 Replication factor C, 99.6 1.3E-14 2.8E-19 147.5 14.5 196 219-449 24-236 (346)
121 PRK06305 DNA polymerase III su 99.6 3.6E-14 7.7E-19 155.6 18.6 213 221-468 7-243 (451)
122 COG2204 AtoC Response regulato 99.6 3.8E-15 8.3E-20 161.3 10.4 212 227-466 137-386 (464)
123 PF00308 Bac_DnaA: Bacterial d 99.6 2.8E-14 6.2E-19 142.2 15.7 199 226-451 3-216 (219)
124 PTZ00112 origin recognition co 99.6 7.7E-14 1.7E-18 158.1 20.7 216 231-472 755-1007(1164)
125 PRK06620 hypothetical protein; 99.6 7.5E-14 1.6E-18 138.7 17.7 195 224-468 9-213 (214)
126 PRK10787 DNA-binding ATP-depen 99.6 2.6E-14 5.7E-19 165.7 16.5 220 228-468 319-579 (784)
127 PRK14954 DNA polymerase III su 99.6 7.4E-14 1.6E-18 157.7 19.4 216 222-468 7-254 (620)
128 TIGR02640 gas_vesic_GvpN gas v 99.6 2E-13 4.3E-18 139.7 20.5 187 266-473 23-259 (262)
129 PRK13407 bchI magnesium chelat 99.6 2.7E-14 5.9E-19 150.4 14.2 217 226-472 3-307 (334)
130 PRK14948 DNA polymerase III su 99.6 1E-13 2.2E-18 157.0 19.8 208 222-466 7-240 (620)
131 COG2812 DnaX DNA polymerase II 99.6 5.1E-14 1.1E-18 154.5 15.9 209 223-466 8-239 (515)
132 PRK14950 DNA polymerase III su 99.5 1.9E-13 4.1E-18 154.6 19.7 212 222-468 7-242 (585)
133 COG3604 FhlA Transcriptional r 99.5 1.8E-14 3.9E-19 154.5 9.4 200 227-451 219-456 (550)
134 PRK05201 hslU ATP-dependent pr 99.5 2.5E-13 5.4E-18 145.4 18.1 176 232-411 16-345 (443)
135 PRK15424 propionate catabolism 99.5 3.7E-14 8E-19 157.9 11.8 213 228-465 216-479 (538)
136 TIGR02329 propionate_PrpR prop 99.5 2.8E-14 6.2E-19 158.7 10.8 216 227-467 208-466 (526)
137 CHL00081 chlI Mg-protoporyphyr 99.5 1.1E-13 2.4E-18 146.2 14.2 225 225-474 11-325 (350)
138 TIGR00390 hslU ATP-dependent p 99.5 3.1E-13 6.8E-18 144.6 17.4 175 232-410 13-342 (441)
139 PRK14971 DNA polymerase III su 99.5 5.1E-13 1.1E-17 151.4 19.8 212 222-468 8-243 (614)
140 TIGR00382 clpX endopeptidase C 99.5 3.9E-13 8.5E-18 145.0 17.6 219 232-452 78-385 (413)
141 COG1221 PspF Transcriptional r 99.5 7E-14 1.5E-18 149.2 10.8 197 227-452 74-310 (403)
142 TIGR02974 phageshock_pspF psp 99.5 1.4E-13 3E-18 145.2 13.1 191 233-451 1-233 (329)
143 PF05673 DUF815: Protein of un 99.5 7.9E-13 1.7E-17 132.2 17.6 195 222-446 18-244 (249)
144 PRK11608 pspF phage shock prot 99.5 1.7E-13 3.7E-18 144.5 13.4 195 229-451 4-240 (326)
145 TIGR02903 spore_lon_C ATP-depe 99.5 1.4E-12 3E-17 148.2 21.3 218 225-470 148-429 (615)
146 TIGR01817 nifA Nif-specific re 99.5 1.1E-13 2.3E-18 155.3 12.1 213 225-466 190-440 (534)
147 PRK09087 hypothetical protein; 99.5 1.4E-12 3E-17 130.7 18.6 205 222-471 12-222 (226)
148 COG1224 TIP49 DNA helicase TIP 99.5 1.1E-12 2.3E-17 135.7 17.4 128 324-471 292-432 (450)
149 PRK11034 clpA ATP-dependent Cl 99.5 7.6E-13 1.6E-17 152.7 18.2 168 232-415 459-667 (758)
150 COG1474 CDC6 Cdc6-related prot 99.5 1.7E-12 3.7E-17 138.6 19.4 217 231-471 17-265 (366)
151 PRK10820 DNA-binding transcrip 99.5 1.6E-13 3.5E-18 153.2 11.9 209 226-464 199-447 (520)
152 TIGR02030 BchI-ChlI magnesium 99.5 6.4E-13 1.4E-17 140.3 15.4 218 229-474 2-312 (337)
153 PRK11388 DNA-binding transcrip 99.5 2E-13 4.3E-18 156.1 12.5 214 227-468 321-568 (638)
154 PRK05022 anaerobic nitric oxid 99.5 2.4E-13 5.2E-18 151.5 12.7 196 229-452 185-421 (509)
155 TIGR02639 ClpA ATP-dependent C 99.5 9.4E-13 2E-17 152.7 17.9 203 231-450 454-710 (731)
156 TIGR01650 PD_CobS cobaltochela 99.5 4.6E-13 1E-17 139.8 12.8 206 264-500 64-316 (327)
157 TIGR02442 Cob-chelat-sub cobal 99.4 1.5E-12 3.3E-17 148.5 15.9 216 229-473 2-306 (633)
158 PRK15429 formate hydrogenlyase 99.4 2.4E-12 5.1E-17 148.5 15.8 200 227-451 372-609 (686)
159 cd00009 AAA The AAA+ (ATPases 99.4 4E-12 8.6E-17 114.6 13.7 123 264-399 19-150 (151)
160 PRK09112 DNA polymerase III su 99.4 1.6E-11 3.4E-16 130.7 17.9 191 225-447 17-244 (351)
161 PHA02244 ATPase-like protein 99.4 3.2E-11 6.8E-16 127.6 18.8 148 228-403 94-263 (383)
162 PRK07471 DNA polymerase III su 99.3 3.7E-11 8.1E-16 128.4 18.3 187 225-445 13-240 (365)
163 TIGR03346 chaperone_ClpB ATP-d 99.3 3.9E-11 8.5E-16 141.3 19.8 205 231-451 565-825 (852)
164 TIGR00368 Mg chelatase-related 99.3 2.2E-11 4.8E-16 134.9 16.5 212 227-469 188-497 (499)
165 TIGR03345 VI_ClpV1 type VI sec 99.3 3.2E-11 6.9E-16 141.6 18.7 199 231-449 566-828 (852)
166 TIGR03015 pepcterm_ATPase puta 99.3 1.1E-10 2.3E-15 118.9 19.7 190 266-471 45-266 (269)
167 COG0714 MoxR-like ATPases [Gen 99.3 5.5E-11 1.2E-15 125.5 17.6 135 266-413 45-202 (329)
168 smart00350 MCM minichromosome 99.3 2.9E-11 6.3E-16 134.8 15.6 225 231-471 203-504 (509)
169 TIGR02915 PEP_resp_reg putativ 99.3 1.1E-11 2.4E-16 135.6 11.9 206 229-465 137-383 (445)
170 PF05621 TniB: Bacterial TniB 99.3 8.4E-11 1.8E-15 121.1 16.9 220 229-467 32-285 (302)
171 PRK10865 protein disaggregatio 99.3 1E-10 2.2E-15 137.6 19.3 166 230-415 567-780 (857)
172 PRK05564 DNA polymerase III su 99.3 1E-10 2.2E-15 122.6 16.7 177 228-442 1-189 (313)
173 PRK10923 glnG nitrogen regulat 99.3 1.5E-11 3.3E-16 135.5 10.8 209 229-468 136-385 (469)
174 COG0542 clpA ATP-binding subun 99.3 1.3E-10 2.8E-15 132.5 18.4 168 224-415 163-347 (786)
175 CHL00095 clpC Clp protease ATP 99.3 1E-10 2.2E-15 137.4 17.9 168 231-415 509-733 (821)
176 TIGR00678 holB DNA polymerase 99.3 8.3E-11 1.8E-15 114.0 14.0 144 262-434 12-183 (188)
177 PRK13531 regulatory ATPase Rav 99.3 1.9E-10 4.2E-15 125.5 18.1 212 232-474 21-286 (498)
178 TIGR00764 lon_rel lon-related 99.2 1.6E-10 3.5E-15 131.1 17.7 101 369-472 268-392 (608)
179 PRK11361 acetoacetate metaboli 99.2 4.1E-11 8.8E-16 131.4 12.1 209 229-468 141-390 (457)
180 TIGR02031 BchD-ChlD magnesium 99.2 6.6E-11 1.4E-15 133.9 13.3 191 266-473 18-260 (589)
181 smart00382 AAA ATPases associa 99.2 8.5E-11 1.8E-15 104.6 11.4 126 264-401 2-147 (148)
182 KOG1942 DNA helicase, TBP-inte 99.2 3.6E-10 7.9E-15 114.4 17.0 130 323-472 296-439 (456)
183 PRK07399 DNA polymerase III su 99.2 3.5E-10 7.7E-15 118.7 17.8 184 229-446 2-224 (314)
184 KOG1969 DNA replication checkp 99.2 4E-10 8.6E-15 125.5 18.6 215 217-455 257-519 (877)
185 COG2607 Predicted ATPase (AAA+ 99.2 7.2E-10 1.6E-14 109.8 18.3 195 223-447 52-277 (287)
186 KOG0991 Replication factor C, 99.2 1E-10 2.2E-15 115.2 12.3 205 220-468 16-234 (333)
187 TIGR00602 rad24 checkpoint pro 99.2 2.6E-10 5.5E-15 129.2 16.5 262 217-504 70-392 (637)
188 PF07728 AAA_5: AAA domain (dy 99.2 1.9E-11 4E-16 112.4 5.8 113 266-392 1-139 (139)
189 COG0542 clpA ATP-binding subun 99.2 1.1E-10 2.5E-15 132.9 13.0 161 231-414 491-705 (786)
190 TIGR01818 ntrC nitrogen regula 99.2 1.1E-10 2.3E-15 128.4 11.9 208 230-468 133-381 (463)
191 PF00158 Sigma54_activat: Sigm 99.2 1.4E-10 3.1E-15 111.1 10.8 122 233-378 1-143 (168)
192 PF01078 Mg_chelatase: Magnesi 99.2 4.3E-11 9.4E-16 117.4 7.4 142 229-403 1-204 (206)
193 PRK15115 response regulator Gl 99.2 9E-11 1.9E-15 128.4 10.7 206 232-468 135-381 (444)
194 COG0470 HolB ATPase involved i 99.2 6.1E-10 1.3E-14 116.0 16.2 150 231-411 1-178 (325)
195 COG3283 TyrR Transcriptional r 99.2 1.3E-10 2.9E-15 120.3 10.5 212 226-465 199-443 (511)
196 PF06068 TIP49: TIP49 C-termin 99.2 7.2E-10 1.6E-14 116.5 15.8 66 229-301 22-89 (398)
197 PRK11331 5-methylcytosine-spec 99.1 5.1E-10 1.1E-14 121.3 14.0 144 230-400 174-357 (459)
198 PRK09862 putative ATP-dependen 99.1 8E-10 1.7E-14 122.3 15.5 212 228-469 188-490 (506)
199 PRK04132 replication factor C 99.1 1.3E-09 2.8E-14 126.6 17.6 171 266-467 566-750 (846)
200 PRK05707 DNA polymerase III su 99.1 9.3E-10 2E-14 116.2 14.6 158 261-444 19-204 (328)
201 COG1219 ClpX ATP-dependent pro 99.1 1.7E-10 3.6E-15 118.1 8.3 131 232-364 62-203 (408)
202 KOG0741 AAA+-type ATPase [Post 99.1 1.3E-09 2.8E-14 117.6 15.3 156 244-411 524-683 (744)
203 COG1239 ChlI Mg-chelatase subu 99.1 8.1E-10 1.8E-14 117.5 13.6 213 227-473 13-324 (423)
204 PRK08058 DNA polymerase III su 99.1 1.8E-09 3.9E-14 114.2 16.3 175 229-445 3-206 (329)
205 COG3284 AcoR Transcriptional a 99.1 1.3E-10 2.8E-15 128.5 6.8 205 234-469 316-555 (606)
206 PRK10365 transcriptional regul 99.1 4.7E-10 1E-14 122.4 10.8 206 232-468 140-386 (441)
207 COG0606 Predicted ATPase with 99.0 5.3E-10 1.1E-14 120.5 9.2 210 227-469 175-483 (490)
208 PRK08116 hypothetical protein; 99.0 2.2E-09 4.9E-14 110.3 13.3 123 264-403 114-251 (268)
209 PTZ00111 DNA replication licen 99.0 6.2E-09 1.3E-13 120.6 16.1 130 264-409 492-652 (915)
210 COG1220 HslU ATP-dependent pro 99.0 5.3E-09 1.1E-13 108.0 13.0 83 325-411 252-346 (444)
211 PF07724 AAA_2: AAA domain (Cd 99.0 1.1E-09 2.4E-14 105.2 7.2 111 265-380 4-131 (171)
212 PF14532 Sigma54_activ_2: Sigm 99.0 8E-10 1.7E-14 102.0 6.0 127 234-402 1-137 (138)
213 smart00763 AAA_PrkA PrkA AAA d 98.9 1.1E-08 2.4E-13 108.4 14.5 84 229-319 48-144 (361)
214 PRK13765 ATP-dependent proteas 98.9 5.5E-09 1.2E-13 118.7 12.2 99 369-470 277-399 (637)
215 PF13177 DNA_pol3_delta2: DNA 98.9 6.2E-09 1.3E-13 99.1 9.9 133 235-400 1-160 (162)
216 PRK06871 DNA polymerase III su 98.9 3.9E-08 8.4E-13 103.6 16.7 152 261-440 21-200 (325)
217 PRK12377 putative replication 98.9 2E-08 4.3E-13 102.1 13.8 99 265-378 102-205 (248)
218 PRK06964 DNA polymerase III su 98.9 9.2E-09 2E-13 109.0 11.7 134 261-413 18-203 (342)
219 PRK08181 transposase; Validate 98.9 2.2E-08 4.9E-13 102.9 14.0 98 265-378 107-208 (269)
220 KOG0990 Replication factor C, 98.9 1.8E-08 4E-13 103.6 13.1 200 216-452 26-238 (360)
221 PRK07952 DNA replication prote 98.9 2.8E-08 6.1E-13 100.7 13.7 99 265-378 100-204 (244)
222 PRK07993 DNA polymerase III su 98.9 4.3E-08 9.3E-13 103.9 15.4 159 261-443 21-204 (334)
223 PRK08769 DNA polymerase III su 98.9 5.7E-08 1.2E-12 102.1 16.1 158 261-443 23-208 (319)
224 KOG1514 Origin recognition com 98.8 5.2E-08 1.1E-12 108.7 15.3 195 266-475 424-659 (767)
225 PRK06526 transposase; Provisio 98.8 2E-08 4.3E-13 102.5 10.4 100 264-379 98-201 (254)
226 KOG2680 DNA helicase TIP49, TB 98.8 1.7E-07 3.7E-12 95.6 16.4 129 324-472 289-430 (454)
227 KOG0745 Putative ATP-dependent 98.8 2.1E-08 4.5E-13 106.5 10.1 74 266-339 228-307 (564)
228 PF07726 AAA_3: ATPase family 98.8 2.4E-09 5.2E-14 97.5 2.1 111 266-392 1-129 (131)
229 KOG2035 Replication factor C, 98.8 2.3E-07 5.1E-12 93.9 16.2 184 220-434 2-220 (351)
230 PRK06835 DNA replication prote 98.8 6.5E-08 1.4E-12 102.2 12.6 109 265-388 184-303 (329)
231 PF01637 Arch_ATPase: Archaeal 98.7 9.8E-08 2.1E-12 93.8 12.6 184 234-442 2-233 (234)
232 PF03215 Rad17: Rad17 cell cyc 98.7 1.4E-07 3E-12 105.2 14.9 212 217-452 5-269 (519)
233 PRK08939 primosomal protein Dn 98.7 1.2E-07 2.6E-12 99.3 13.5 100 263-378 155-260 (306)
234 PRK06090 DNA polymerase III su 98.7 2.6E-07 5.7E-12 97.1 15.9 130 261-412 22-178 (319)
235 PRK13406 bchD magnesium chelat 98.7 6.4E-08 1.4E-12 109.3 11.9 189 265-473 26-252 (584)
236 PRK09183 transposase/IS protei 98.7 1.6E-07 3.5E-12 96.1 12.3 99 265-378 103-205 (259)
237 COG1484 DnaC DNA replication p 98.6 2.9E-07 6.3E-12 94.0 12.8 70 264-335 105-179 (254)
238 PF13173 AAA_14: AAA domain 98.6 2.5E-07 5.4E-12 84.3 11.1 118 265-405 3-126 (128)
239 KOG2227 Pre-initiation complex 98.6 8.5E-07 1.8E-11 95.4 16.6 224 230-474 149-418 (529)
240 PF01695 IstB_IS21: IstB-like 98.6 1.5E-07 3.2E-12 91.1 8.3 99 264-378 47-149 (178)
241 KOG1051 Chaperone HSP104 and r 98.6 4.5E-07 9.9E-12 105.2 13.3 131 231-378 562-710 (898)
242 PRK06921 hypothetical protein; 98.6 5.5E-07 1.2E-11 92.6 12.6 103 264-378 117-224 (266)
243 COG1241 MCM2 Predicted ATPase 98.6 2.9E-07 6.4E-12 104.5 11.1 189 265-472 320-593 (682)
244 PRK08699 DNA polymerase III su 98.5 6.1E-07 1.3E-11 94.8 12.5 132 261-412 18-183 (325)
245 PF00493 MCM: MCM2/3/5 family 98.5 5.7E-08 1.2E-12 102.9 3.0 218 231-471 24-326 (331)
246 KOG0480 DNA replication licens 98.5 8.5E-07 1.8E-11 98.1 11.2 223 229-472 343-644 (764)
247 PF13401 AAA_22: AAA domain; P 98.4 4.9E-07 1.1E-11 81.6 7.5 97 265-376 5-125 (131)
248 PF12775 AAA_7: P-loop contain 98.4 1.5E-06 3.3E-11 89.6 11.4 163 227-414 6-193 (272)
249 KOG0478 DNA replication licens 98.4 4E-06 8.7E-11 93.5 14.9 222 232-470 430-723 (804)
250 KOG1970 Checkpoint RAD17-RFC c 98.4 3.8E-06 8.2E-11 92.0 14.0 211 218-451 69-320 (634)
251 COG3267 ExeA Type II secretory 98.4 8.4E-06 1.8E-10 82.1 15.3 184 266-465 53-267 (269)
252 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.5E-06 3.2E-11 93.1 10.4 141 261-428 59-207 (362)
253 PF06480 FtsH_ext: FtsH Extrac 98.4 3.5E-07 7.7E-12 79.9 4.7 96 64-163 1-108 (110)
254 cd01120 RecA-like_NTPases RecA 98.3 2.3E-06 5E-11 79.1 9.1 110 267-380 2-138 (165)
255 PF05729 NACHT: NACHT domain 98.3 1E-05 2.2E-10 75.3 13.0 142 266-416 2-165 (166)
256 PRK05917 DNA polymerase III su 98.3 9.3E-06 2E-10 84.2 13.0 122 261-401 16-154 (290)
257 PF12774 AAA_6: Hydrolytic ATP 98.3 8.8E-06 1.9E-10 82.0 12.3 123 266-409 34-175 (231)
258 TIGR02237 recomb_radB DNA repa 98.2 5.3E-06 1.2E-10 81.5 10.0 115 260-377 8-148 (209)
259 PRK05818 DNA polymerase III su 98.2 3.8E-05 8.2E-10 78.3 14.6 121 262-401 5-147 (261)
260 PLN03210 Resistant to P. syrin 98.2 2.8E-05 6E-10 95.2 16.1 177 226-436 179-389 (1153)
261 PF13191 AAA_16: AAA ATPase do 98.1 4E-06 8.6E-11 79.9 5.7 59 233-300 2-63 (185)
262 PRK07276 DNA polymerase III su 98.1 0.0001 2.2E-09 76.7 16.4 129 261-411 21-172 (290)
263 KOG0482 DNA replication licens 98.1 1.2E-05 2.5E-10 87.2 9.5 220 231-472 342-639 (721)
264 PF00931 NB-ARC: NB-ARC domain 98.1 5.5E-05 1.2E-09 77.5 14.0 172 242-443 4-202 (287)
265 COG1485 Predicted ATPase [Gene 98.1 1.9E-05 4.1E-10 82.9 9.8 135 262-424 63-206 (367)
266 COG4650 RtcR Sigma54-dependent 98.0 2.3E-05 5E-10 80.1 10.0 193 261-471 205-443 (531)
267 PRK07132 DNA polymerase III su 98.0 0.00023 5E-09 74.5 17.4 127 262-412 16-160 (299)
268 KOG2383 Predicted ATPase [Gene 98.0 4.8E-05 1E-09 80.8 11.9 160 261-448 111-297 (467)
269 cd01124 KaiC KaiC is a circadi 98.0 4.1E-05 8.8E-10 73.4 10.7 101 267-378 2-139 (187)
270 PRK11823 DNA repair protein Ra 98.0 4E-05 8.6E-10 84.5 11.5 79 260-338 76-171 (446)
271 TIGR02688 conserved hypothetic 97.9 0.00018 3.9E-09 77.9 15.2 74 239-335 195-272 (449)
272 cd01121 Sms Sms (bacterial rad 97.9 5.4E-05 1.2E-09 81.5 10.6 79 260-338 78-173 (372)
273 PRK09361 radB DNA repair and r 97.9 6.9E-05 1.5E-09 74.6 10.1 116 260-377 19-160 (225)
274 KOG2170 ATPase of the AAA+ sup 97.9 0.00072 1.6E-08 69.8 17.3 213 232-472 83-320 (344)
275 KOG1051 Chaperone HSP104 and r 97.9 9.6E-05 2.1E-09 86.3 12.0 200 229-453 184-412 (898)
276 TIGR01618 phage_P_loop phage n 97.8 5.9E-05 1.3E-09 75.4 7.8 71 263-337 11-95 (220)
277 KOG0477 DNA replication licens 97.8 9.3E-05 2E-09 82.1 9.8 223 232-472 450-758 (854)
278 PF00910 RNA_helicase: RNA hel 97.8 9.3E-05 2E-09 65.4 7.9 23 267-289 1-23 (107)
279 TIGR02012 tigrfam_recA protein 97.7 0.00014 3E-09 76.7 10.1 118 260-377 51-190 (321)
280 PRK06067 flagellar accessory p 97.7 0.00015 3.3E-09 72.7 9.9 41 260-300 21-64 (234)
281 cd01394 radB RadB. The archaea 97.7 0.00022 4.7E-09 70.6 10.8 141 260-402 15-188 (218)
282 KOG2228 Origin recognition com 97.7 0.00022 4.9E-09 74.4 11.0 160 232-414 25-219 (408)
283 PHA00729 NTP-binding motif con 97.7 6.7E-05 1.5E-09 75.1 6.9 24 266-289 19-42 (226)
284 PRK15455 PrkA family serine pr 97.7 4.4E-05 9.5E-10 85.3 5.9 63 229-297 74-137 (644)
285 PRK08533 flagellar accessory p 97.7 0.00026 5.7E-09 71.3 11.0 76 261-336 21-130 (230)
286 PRK00131 aroK shikimate kinase 97.7 0.00013 2.8E-09 68.9 8.4 39 263-303 3-41 (175)
287 COG1618 Predicted nucleotide k 97.7 0.00019 4.2E-09 67.8 9.1 26 263-288 4-29 (179)
288 PF05707 Zot: Zonular occluden 97.7 5.5E-05 1.2E-09 73.9 5.3 124 267-402 3-147 (193)
289 PRK08118 topology modulation p 97.7 8.9E-05 1.9E-09 71.0 6.4 33 266-298 3-35 (167)
290 COG5271 MDN1 AAA ATPase contai 97.6 0.00015 3.2E-09 87.2 9.1 138 263-415 1542-1704(4600)
291 KOG0481 DNA replication licens 97.6 0.00014 3E-09 79.2 8.1 121 266-399 366-512 (729)
292 TIGR00416 sms DNA repair prote 97.6 0.00035 7.7E-09 77.2 11.6 78 260-337 90-184 (454)
293 KOG1968 Replication factor C, 97.6 0.00025 5.3E-09 83.4 10.8 211 219-450 308-535 (871)
294 PRK14722 flhF flagellar biosyn 97.6 0.00019 4.2E-09 77.1 9.1 110 262-386 135-266 (374)
295 TIGR02858 spore_III_AA stage I 97.6 0.00018 3.9E-09 74.2 8.5 113 265-399 112-256 (270)
296 PF13207 AAA_17: AAA domain; P 97.6 4.9E-05 1.1E-09 67.7 3.6 30 267-296 2-31 (121)
297 COG1373 Predicted ATPase (AAA+ 97.6 0.00061 1.3E-08 74.2 12.7 123 266-408 39-161 (398)
298 PF14516 AAA_35: AAA-like doma 97.6 0.0055 1.2E-07 65.1 19.5 174 266-448 33-244 (331)
299 PF07693 KAP_NTPase: KAP famil 97.6 0.0018 4E-08 67.7 15.6 78 322-414 171-263 (325)
300 cd00983 recA RecA is a bacter 97.6 0.00035 7.6E-09 73.8 10.0 117 261-377 52-190 (325)
301 PRK12723 flagellar biosynthesi 97.5 0.00063 1.4E-08 73.7 11.7 110 263-386 173-306 (388)
302 cd03283 ABC_MutS-like MutS-lik 97.5 0.00057 1.2E-08 67.3 10.4 104 265-382 26-151 (199)
303 PRK04296 thymidine kinase; Pro 97.5 0.00033 7.1E-09 68.4 8.1 70 266-335 4-90 (190)
304 cd01393 recA_like RecA is a b 97.5 0.00038 8.2E-09 69.1 8.6 116 260-376 15-166 (226)
305 cd00046 DEXDc DEAD-like helica 97.5 0.00076 1.7E-08 59.6 9.7 24 265-288 1-24 (144)
306 PF13671 AAA_33: AAA domain; P 97.5 0.00037 8E-09 63.7 7.8 37 267-305 2-38 (143)
307 PRK07261 topology modulation p 97.5 0.00018 4E-09 69.0 5.9 33 266-298 2-34 (171)
308 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00055 1.2E-08 68.4 9.5 117 260-377 15-168 (235)
309 cd01128 rho_factor Transcripti 97.4 0.0012 2.7E-08 67.3 11.8 111 266-376 18-164 (249)
310 PRK10536 hypothetical protein; 97.4 0.00071 1.5E-08 69.1 9.9 46 228-287 52-97 (262)
311 PF06745 KaiC: KaiC; InterPro 97.4 0.00063 1.4E-08 67.8 9.4 108 260-377 15-159 (226)
312 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0012 2.7E-08 66.5 11.5 40 260-299 17-59 (237)
313 PRK14532 adenylate kinase; Pro 97.4 0.00033 7.2E-09 67.7 7.0 36 266-303 2-37 (188)
314 PF00437 T2SE: Type II/IV secr 97.4 0.00015 3.2E-09 74.3 4.8 101 224-334 97-208 (270)
315 PRK09376 rho transcription ter 97.4 0.00055 1.2E-08 73.7 9.0 109 267-375 172-316 (416)
316 PRK04841 transcriptional regul 97.4 0.0054 1.2E-07 73.0 18.2 157 266-444 34-226 (903)
317 PRK05973 replicative DNA helic 97.4 0.0012 2.6E-08 66.8 10.7 40 260-299 60-102 (237)
318 PRK00771 signal recognition pa 97.4 0.0026 5.7E-08 69.9 14.1 72 262-335 93-187 (437)
319 PRK06762 hypothetical protein; 97.4 0.00073 1.6E-08 63.9 8.5 41 264-304 2-42 (166)
320 COG1116 TauB ABC-type nitrate/ 97.4 0.0003 6.5E-09 71.0 6.0 22 266-287 31-52 (248)
321 PRK12339 2-phosphoglycerate ki 97.4 0.003 6.4E-08 62.3 12.9 29 264-292 3-31 (197)
322 cd01122 GP4d_helicase GP4d_hel 97.3 0.00087 1.9E-08 68.5 9.1 39 260-298 26-68 (271)
323 KOG2543 Origin recognition com 97.3 0.0035 7.5E-08 66.7 13.4 162 230-414 5-193 (438)
324 PRK13948 shikimate kinase; Pro 97.3 0.00085 1.8E-08 65.3 8.4 43 262-306 8-50 (182)
325 cd00984 DnaB_C DnaB helicase C 97.3 0.0015 3.3E-08 65.5 10.5 39 260-298 9-51 (242)
326 PRK09354 recA recombinase A; P 97.3 0.0012 2.6E-08 70.4 9.9 77 261-337 57-152 (349)
327 cd01130 VirB11-like_ATPase Typ 97.3 0.00042 9.1E-09 67.3 5.8 68 265-332 26-109 (186)
328 TIGR02782 TrbB_P P-type conjug 97.3 0.00032 6.9E-09 73.5 5.3 66 265-332 133-213 (299)
329 PRK04040 adenylate kinase; Pro 97.3 0.0018 4E-08 63.2 10.2 35 264-300 2-38 (188)
330 PF06309 Torsin: Torsin; Inte 97.3 0.0014 3E-08 59.9 8.6 52 231-288 25-77 (127)
331 PRK14974 cell division protein 97.2 0.0021 4.7E-08 68.3 11.3 73 263-335 139-234 (336)
332 PF13604 AAA_30: AAA domain; P 97.2 0.0012 2.6E-08 64.8 8.8 97 266-378 20-132 (196)
333 cd00464 SK Shikimate kinase (S 97.2 0.00054 1.2E-08 63.5 6.0 39 266-306 1-39 (154)
334 PF03266 NTPase_1: NTPase; In 97.2 0.00045 9.8E-09 66.3 5.5 27 266-292 1-30 (168)
335 TIGR02238 recomb_DMC1 meiotic 97.2 0.0012 2.5E-08 69.7 9.1 116 260-376 92-243 (313)
336 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0027 5.9E-08 63.2 11.2 42 260-301 12-56 (224)
337 COG0703 AroK Shikimate kinase 97.2 0.00094 2E-08 64.1 7.4 32 265-296 3-34 (172)
338 PRK13947 shikimate kinase; Pro 97.2 0.00033 7.2E-09 66.4 4.3 31 266-296 3-33 (171)
339 PF00448 SRP54: SRP54-type pro 97.2 0.0011 2.4E-08 65.1 7.8 108 264-383 1-131 (196)
340 PRK04301 radA DNA repair and r 97.2 0.0017 3.7E-08 68.4 9.7 117 260-377 98-251 (317)
341 TIGR01420 pilT_fam pilus retra 97.2 0.001 2.3E-08 70.9 8.0 67 266-332 124-204 (343)
342 cd01131 PilT Pilus retraction 97.2 0.00067 1.4E-08 66.6 6.0 67 266-332 3-83 (198)
343 COG3854 SpoIIIAA ncharacterize 97.2 0.0032 7E-08 63.0 10.7 69 266-334 139-229 (308)
344 TIGR02236 recomb_radA DNA repa 97.2 0.0019 4.1E-08 67.7 9.8 116 260-376 91-244 (310)
345 PRK03839 putative kinase; Prov 97.1 0.00038 8.2E-09 66.9 3.9 31 266-296 2-32 (180)
346 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.0024 5.1E-08 63.7 9.8 39 260-298 16-57 (229)
347 PF10236 DAP3: Mitochondrial r 97.1 0.022 4.7E-07 60.1 17.2 130 312-442 142-308 (309)
348 PRK12724 flagellar biosynthesi 97.1 0.0077 1.7E-07 65.7 14.0 115 263-386 222-353 (432)
349 PRK13946 shikimate kinase; Pro 97.1 0.0013 2.8E-08 63.7 7.4 34 263-296 9-42 (184)
350 cd03216 ABC_Carb_Monos_I This 97.1 0.0015 3.3E-08 62.0 7.7 104 264-381 26-144 (163)
351 COG1066 Sms Predicted ATP-depe 97.1 0.0046 9.9E-08 66.5 11.8 81 266-346 95-191 (456)
352 PRK00625 shikimate kinase; Pro 97.1 0.00049 1.1E-08 66.4 4.2 31 266-296 2-32 (173)
353 PF05272 VirE: Virulence-assoc 97.1 0.0014 3.1E-08 64.5 7.6 124 240-399 34-168 (198)
354 PLN03187 meiotic recombination 97.1 0.0021 4.5E-08 68.6 9.2 116 260-376 122-273 (344)
355 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0041 8.9E-08 61.9 10.8 113 264-386 29-161 (213)
356 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0025 5.4E-08 65.3 9.4 39 260-298 32-73 (259)
357 cd00227 CPT Chloramphenicol (C 97.0 0.00062 1.3E-08 65.3 4.4 39 265-303 3-41 (175)
358 cd02020 CMPK Cytidine monophos 97.0 0.0018 3.9E-08 59.3 7.4 30 267-296 2-31 (147)
359 PLN02200 adenylate kinase fami 97.0 0.0008 1.7E-08 68.0 5.4 42 260-303 39-80 (234)
360 PTZ00035 Rad51 protein; Provis 97.0 0.0029 6.2E-08 67.4 9.8 115 260-375 114-264 (337)
361 KOG3347 Predicted nucleotide k 97.0 0.0013 2.8E-08 61.5 6.2 35 266-302 9-43 (176)
362 PRK11889 flhF flagellar biosyn 97.0 0.0048 1E-07 66.7 11.4 94 237-334 217-331 (436)
363 PRK13894 conjugal transfer ATP 97.0 0.00095 2.1E-08 70.5 6.0 69 265-333 149-229 (319)
364 PRK13900 type IV secretion sys 97.0 0.0014 2.9E-08 69.8 7.2 70 264-333 160-245 (332)
365 PRK09519 recA DNA recombinatio 97.0 0.0027 5.9E-08 74.0 10.2 116 260-375 56-193 (790)
366 PRK04328 hypothetical protein; 97.0 0.0059 1.3E-07 62.2 11.6 40 260-299 19-61 (249)
367 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00059 1.3E-08 65.4 4.0 35 267-303 2-36 (183)
368 PRK13695 putative NTPase; Prov 97.0 0.0082 1.8E-07 57.4 11.9 23 266-288 2-24 (174)
369 PRK13833 conjugal transfer pro 97.0 0.001 2.2E-08 70.4 6.0 68 265-332 145-224 (323)
370 PLN02674 adenylate kinase 97.0 0.0025 5.5E-08 64.8 8.7 39 263-303 30-68 (244)
371 PRK13949 shikimate kinase; Pro 97.0 0.00065 1.4E-08 65.1 4.0 31 266-296 3-33 (169)
372 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0045 9.7E-08 62.8 10.4 36 267-302 2-40 (249)
373 PRK05800 cobU adenosylcobinami 97.0 0.0032 7E-08 60.5 8.6 33 266-298 3-35 (170)
374 PF12780 AAA_8: P-loop contain 97.0 0.005 1.1E-07 63.5 10.4 91 232-334 9-100 (268)
375 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0022 4.7E-08 66.0 7.8 94 228-334 57-160 (264)
376 cd02027 APSK Adenosine 5'-phos 96.9 0.0031 6.7E-08 59.1 8.1 36 267-302 2-40 (149)
377 PRK14531 adenylate kinase; Pro 96.9 0.00088 1.9E-08 64.8 4.5 36 265-302 3-38 (183)
378 COG4619 ABC-type uncharacteriz 96.9 0.0066 1.4E-07 58.2 10.1 22 266-287 31-52 (223)
379 PRK06217 hypothetical protein; 96.9 0.00079 1.7E-08 65.0 4.2 31 266-296 3-33 (183)
380 TIGR02655 circ_KaiC circadian 96.9 0.0025 5.5E-08 71.1 8.7 77 260-336 259-366 (484)
381 PRK10867 signal recognition pa 96.9 0.013 2.7E-07 64.5 13.8 74 262-335 98-195 (433)
382 smart00487 DEXDc DEAD-like hel 96.9 0.0054 1.2E-07 57.6 9.7 33 265-297 25-62 (201)
383 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0029 6.3E-08 66.8 8.6 116 260-376 92-243 (316)
384 TIGR02788 VirB11 P-type DNA tr 96.9 0.0018 4E-08 68.0 7.1 71 261-333 141-228 (308)
385 smart00534 MUTSac ATPase domai 96.9 0.0071 1.5E-07 58.6 10.3 19 267-285 2-20 (185)
386 cd01125 repA Hexameric Replica 96.9 0.0038 8.2E-08 62.9 8.7 33 267-299 4-51 (239)
387 cd00544 CobU Adenosylcobinamid 96.9 0.005 1.1E-07 59.2 9.1 94 267-362 2-113 (169)
388 cd01428 ADK Adenylate kinase ( 96.9 0.0009 1.9E-08 64.5 4.0 35 267-303 2-36 (194)
389 PRK13764 ATPase; Provisional 96.9 0.0015 3.3E-08 74.2 6.3 70 264-334 257-335 (602)
390 PRK08154 anaerobic benzoate ca 96.9 0.0034 7.5E-08 66.0 8.6 33 262-294 131-163 (309)
391 COG4178 ABC-type uncharacteriz 96.9 0.0023 5E-08 72.3 7.7 53 313-380 523-575 (604)
392 TIGR02655 circ_KaiC circadian 96.9 0.0072 1.6E-07 67.5 11.6 41 260-300 17-61 (484)
393 PLN03186 DNA repair protein RA 96.9 0.0038 8.3E-08 66.6 8.9 117 260-377 119-271 (342)
394 PF01745 IPT: Isopentenyl tran 96.9 0.0014 3.1E-08 64.9 5.1 151 266-433 3-161 (233)
395 cd02021 GntK Gluconate kinase 96.9 0.00096 2.1E-08 61.9 3.8 33 267-301 2-34 (150)
396 PRK14730 coaE dephospho-CoA ki 96.9 0.0035 7.6E-08 61.5 8.0 42 266-309 3-44 (195)
397 PTZ00088 adenylate kinase 1; P 96.9 0.0012 2.6E-08 66.6 4.7 38 263-302 5-42 (229)
398 cd03238 ABC_UvrA The excision 96.9 0.0098 2.1E-07 57.5 10.9 114 265-399 22-162 (176)
399 TIGR03499 FlhF flagellar biosy 96.9 0.0036 7.9E-08 65.0 8.5 38 263-300 193-235 (282)
400 COG0563 Adk Adenylate kinase a 96.8 0.0016 3.5E-08 63.1 5.3 34 266-301 2-35 (178)
401 KOG0479 DNA replication licens 96.8 0.023 5.1E-07 63.3 14.6 148 232-397 302-480 (818)
402 PRK06581 DNA polymerase III su 96.8 0.044 9.5E-07 55.6 15.4 136 263-417 14-164 (263)
403 PRK06696 uridine kinase; Valid 96.8 0.0023 5.1E-08 63.8 6.5 40 263-302 21-63 (223)
404 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0071 1.5E-07 56.3 9.2 99 264-381 26-129 (144)
405 PRK13808 adenylate kinase; Pro 96.8 0.0035 7.5E-08 66.5 8.0 35 266-302 2-36 (333)
406 PF09848 DUF2075: Uncharacteri 96.8 0.0059 1.3E-07 65.3 9.9 23 266-288 3-25 (352)
407 PRK10416 signal recognition pa 96.8 0.017 3.6E-07 61.2 13.0 37 262-298 112-151 (318)
408 PTZ00202 tuzin; Provisional 96.8 0.043 9.3E-07 60.1 16.1 64 227-299 258-321 (550)
409 cd03115 SRP The signal recogni 96.8 0.0076 1.7E-07 57.3 9.6 34 267-300 3-39 (173)
410 PRK13851 type IV secretion sys 96.8 0.0022 4.9E-08 68.4 6.4 72 262-333 160-246 (344)
411 PF13481 AAA_25: AAA domain; P 96.8 0.0037 8.1E-08 60.2 7.4 73 266-338 34-156 (193)
412 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.9E-08 65.1 4.2 35 266-302 5-39 (215)
413 PRK06547 hypothetical protein; 96.8 0.0014 3.1E-08 63.1 4.3 34 262-295 13-46 (172)
414 TIGR01313 therm_gnt_kin carboh 96.8 0.0011 2.4E-08 62.4 3.5 32 267-300 1-32 (163)
415 PRK03731 aroL shikimate kinase 96.8 0.0015 3.2E-08 62.1 4.4 31 265-295 3-33 (171)
416 PF04665 Pox_A32: Poxvirus A32 96.8 0.021 4.5E-07 58.0 12.7 132 263-413 12-169 (241)
417 TIGR00152 dephospho-CoA kinase 96.8 0.0088 1.9E-07 57.9 9.8 41 267-309 2-42 (188)
418 COG4088 Predicted nucleotide k 96.7 0.0052 1.1E-07 60.5 7.8 22 267-288 4-25 (261)
419 PRK05057 aroK shikimate kinase 96.7 0.0017 3.6E-08 62.4 4.4 34 264-297 4-37 (172)
420 PHA02530 pseT polynucleotide k 96.7 0.0047 1E-07 64.1 8.1 40 264-304 2-41 (300)
421 PRK04220 2-phosphoglycerate ki 96.7 0.04 8.6E-07 57.7 14.8 40 262-302 90-129 (301)
422 PHA02774 E1; Provisional 96.7 0.0072 1.6E-07 68.0 9.8 33 265-297 435-468 (613)
423 PRK08233 hypothetical protein; 96.7 0.005 1.1E-07 58.6 7.6 33 265-297 4-37 (182)
424 TIGR00064 ftsY signal recognit 96.7 0.034 7.5E-07 57.5 14.2 38 262-299 70-110 (272)
425 PF08423 Rad51: Rad51; InterP 96.7 0.0035 7.6E-08 64.2 6.9 116 261-377 35-186 (256)
426 TIGR02525 plasmid_TraJ plasmid 96.7 0.0037 8.1E-08 67.4 7.3 68 266-333 151-235 (372)
427 COG2874 FlaH Predicted ATPases 96.7 0.01 2.2E-07 58.8 9.7 126 251-388 13-176 (235)
428 KOG3928 Mitochondrial ribosome 96.7 0.075 1.6E-06 57.3 16.6 50 395-445 405-458 (461)
429 cd03243 ABC_MutS_homologs The 96.7 0.0073 1.6E-07 59.3 8.6 21 266-286 31-51 (202)
430 cd03246 ABCC_Protease_Secretio 96.7 0.0072 1.6E-07 57.8 8.3 101 266-380 30-157 (173)
431 cd03228 ABCC_MRP_Like The MRP 96.7 0.0074 1.6E-07 57.5 8.4 103 264-382 28-158 (171)
432 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0099 2.1E-07 58.3 9.4 20 266-285 30-49 (200)
433 PRK14528 adenylate kinase; Pro 96.7 0.0018 4E-08 62.9 4.2 34 266-301 3-36 (186)
434 PRK05541 adenylylsulfate kinas 96.6 0.006 1.3E-07 58.3 7.7 41 262-302 5-48 (176)
435 PF02562 PhoH: PhoH-like prote 96.6 0.008 1.7E-07 59.6 8.6 23 266-288 21-43 (205)
436 TIGR01526 nadR_NMN_Atrans nico 96.6 0.0055 1.2E-07 65.0 8.0 70 265-335 163-243 (325)
437 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0052 1.1E-07 65.3 7.7 83 230-319 59-144 (358)
438 PRK14529 adenylate kinase; Pro 96.6 0.0038 8.2E-08 62.7 6.4 35 266-302 2-36 (223)
439 PLN02199 shikimate kinase 96.6 0.011 2.5E-07 61.5 10.0 31 266-296 104-134 (303)
440 PHA02624 large T antigen; Prov 96.6 0.0039 8.5E-08 70.3 7.0 119 262-399 429-560 (647)
441 COG1936 Predicted nucleotide k 96.6 0.0032 6.9E-08 60.4 5.4 34 266-302 2-35 (180)
442 COG5271 MDN1 AAA ATPase contai 96.6 0.0068 1.5E-07 73.8 9.0 134 266-414 890-1047(4600)
443 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0097 2.1E-07 55.8 8.6 104 265-383 26-144 (157)
444 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0021 4.5E-08 61.6 4.1 34 266-301 5-38 (188)
445 cd03222 ABC_RNaseL_inhibitor T 96.6 0.012 2.6E-07 57.0 9.3 101 266-380 27-133 (177)
446 COG1102 Cmk Cytidylate kinase 96.6 0.0019 4.1E-08 61.3 3.6 28 267-294 3-30 (179)
447 PF00406 ADK: Adenylate kinase 96.6 0.0049 1.1E-07 57.5 6.4 35 269-305 1-35 (151)
448 PRK09302 circadian clock prote 96.6 0.015 3.2E-07 65.4 11.3 42 260-301 27-72 (509)
449 cd02019 NK Nucleoside/nucleoti 96.6 0.0054 1.2E-07 49.8 5.8 31 267-297 2-33 (69)
450 PRK02496 adk adenylate kinase; 96.6 0.0022 4.7E-08 61.8 4.1 29 266-294 3-31 (184)
451 TIGR01351 adk adenylate kinase 96.6 0.0022 4.7E-08 63.4 4.0 34 267-302 2-35 (210)
452 COG2074 2-phosphoglycerate kin 96.5 0.045 9.8E-07 55.6 13.2 188 260-474 85-284 (299)
453 COG2805 PilT Tfp pilus assembl 96.5 0.021 4.6E-07 59.3 11.1 114 264-405 124-252 (353)
454 PRK05703 flhF flagellar biosyn 96.5 0.018 4E-07 63.2 11.5 37 264-300 221-262 (424)
455 PRK14527 adenylate kinase; Pro 96.5 0.0022 4.7E-08 62.4 3.9 37 263-301 5-41 (191)
456 COG2274 SunT ABC-type bacterio 96.5 0.0075 1.6E-07 70.2 8.9 67 311-399 615-681 (709)
457 cd03223 ABCD_peroxisomal_ALDP 96.5 0.015 3.3E-07 55.3 9.5 100 264-380 27-149 (166)
458 cd03247 ABCC_cytochrome_bd The 96.5 0.019 4E-07 55.1 10.2 104 264-382 28-160 (178)
459 PF05970 PIF1: PIF1-like helic 96.5 0.017 3.6E-07 62.2 10.5 39 263-301 21-62 (364)
460 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0091 2E-07 58.5 7.8 42 262-303 13-55 (199)
461 PRK00279 adk adenylate kinase; 96.5 0.0027 5.9E-08 62.9 4.1 34 267-302 3-36 (215)
462 PRK08099 bifunctional DNA-bind 96.4 0.0079 1.7E-07 65.5 7.9 39 264-302 219-257 (399)
463 cd03230 ABC_DR_subfamily_A Thi 96.4 0.027 5.8E-07 53.8 10.6 101 266-380 28-156 (173)
464 cd03227 ABC_Class2 ABC-type Cl 96.4 0.016 3.4E-07 54.9 8.9 22 264-285 21-42 (162)
465 COG0467 RAD55 RecA-superfamily 96.4 0.016 3.5E-07 59.1 9.4 44 260-303 19-65 (260)
466 PRK14737 gmk guanylate kinase; 96.4 0.0065 1.4E-07 59.2 6.2 26 263-288 3-28 (186)
467 PRK01184 hypothetical protein; 96.4 0.0031 6.7E-08 60.7 3.9 33 266-301 3-35 (184)
468 TIGR03819 heli_sec_ATPase heli 96.4 0.005 1.1E-07 65.7 5.8 69 265-333 179-263 (340)
469 PF13245 AAA_19: Part of AAA d 96.4 0.0052 1.1E-07 51.1 4.6 32 266-297 12-50 (76)
470 PF13238 AAA_18: AAA domain; P 96.3 0.0027 5.9E-08 56.4 3.0 22 267-288 1-22 (129)
471 PRK04182 cytidylate kinase; Pr 96.3 0.0036 7.7E-08 59.4 4.0 29 266-294 2-30 (180)
472 TIGR01425 SRP54_euk signal rec 96.3 0.04 8.6E-07 60.5 12.5 73 262-334 98-193 (429)
473 PRK00889 adenylylsulfate kinas 96.3 0.016 3.5E-07 55.2 8.4 39 264-302 4-45 (175)
474 TIGR01448 recD_rel helicase, p 96.3 0.012 2.7E-07 68.8 9.0 98 266-380 340-456 (720)
475 TIGR00767 rho transcription te 96.3 0.016 3.5E-07 62.8 9.1 23 266-288 170-192 (415)
476 PRK12727 flagellar biosynthesi 96.3 0.025 5.5E-07 63.3 10.9 36 263-298 349-389 (559)
477 PRK12337 2-phosphoglycerate ki 96.3 0.17 3.7E-06 55.9 17.1 72 395-473 386-457 (475)
478 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.016 3.4E-07 57.4 8.5 103 265-383 30-155 (204)
479 PRK09302 circadian clock prote 96.3 0.016 3.4E-07 65.1 9.3 77 260-336 269-376 (509)
480 COG3842 PotA ABC-type spermidi 96.3 0.006 1.3E-07 65.1 5.5 26 261-286 26-53 (352)
481 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.018 3.9E-07 61.9 9.3 66 266-333 136-222 (358)
482 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0044 9.5E-08 58.4 4.0 28 267-294 3-30 (171)
483 PF13521 AAA_28: AAA domain; P 96.2 0.0041 8.9E-08 58.7 3.7 34 267-301 2-35 (163)
484 COG2804 PulE Type II secretory 96.2 0.014 2.9E-07 64.6 8.1 96 225-334 232-338 (500)
485 cd03214 ABC_Iron-Siderophores_ 96.2 0.02 4.4E-07 55.0 8.5 104 265-381 26-160 (180)
486 TIGR02533 type_II_gspE general 96.2 0.012 2.6E-07 65.7 7.7 95 226-334 217-322 (486)
487 PRK10263 DNA translocase FtsK; 96.2 0.021 4.6E-07 69.2 10.0 75 325-412 1142-1218(1355)
488 PF01583 APS_kinase: Adenylyls 96.2 0.0071 1.5E-07 57.4 4.9 39 264-302 2-43 (156)
489 PRK12726 flagellar biosynthesi 96.2 0.023 5E-07 61.3 9.3 61 237-300 181-245 (407)
490 cd03215 ABC_Carb_Monos_II This 96.1 0.026 5.6E-07 54.4 8.9 24 265-288 27-50 (182)
491 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.016 3.5E-07 55.2 7.1 29 266-294 4-35 (159)
492 TIGR02768 TraA_Ti Ti-type conj 96.1 0.016 3.5E-07 68.0 8.7 71 265-335 369-451 (744)
493 PRK10436 hypothetical protein; 96.1 0.018 3.9E-07 63.9 8.5 92 227-333 194-297 (462)
494 PF13479 AAA_24: AAA domain 96.1 0.0079 1.7E-07 59.8 5.1 67 264-335 3-80 (213)
495 TIGR00150 HI0065_YjeE ATPase, 96.1 0.012 2.6E-07 54.4 5.9 27 265-291 23-49 (133)
496 cd03213 ABCG_EPDR ABCG transpo 96.1 0.039 8.5E-07 53.8 9.8 25 264-288 35-59 (194)
497 PRK12608 transcription termina 96.0 0.032 6.9E-07 60.1 9.8 23 266-288 135-157 (380)
498 COG5245 DYN1 Dynein, heavy cha 96.0 0.04 8.8E-07 67.0 11.2 178 263-453 1493-1718(3164)
499 PRK14526 adenylate kinase; Pro 96.0 0.0062 1.3E-07 60.6 4.1 35 266-302 2-36 (211)
500 PF07931 CPT: Chloramphenicol 96.0 0.0091 2E-07 57.7 5.0 38 266-303 3-40 (174)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-100 Score=832.93 Aligned_cols=497 Identities=55% Similarity=0.865 Sum_probs=445.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCceEEEEEecCccCCCceeEEEEEcC--
Q 007989 66 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 143 (582)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (582)
+|++++++++.+++.+.. ..+.+++|++|+.++..++|++|.+...+.........+ ....+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 577777777766766642 234679999999999999999999976552222222221 12233444
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccccccccc
Q 007989 144 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 223 (582)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 223 (582)
..+.++...+..+++.+....+... +.|..++..|++.+++++.++|++++...++ ++.+ .|++|+|+++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g---~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQGG---GGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCc-ccCCChHHHHHhcc
Confidence 3467899999999986655544333 5677778788777777776666554433221 2222 89999999999988
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
....++|+|++|+|++|+++.|+|++|++|.+|..+|+++|+|+||+||||||||+||||+|+|+++||+++|+++|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
|+|.+++++|++|++|++++||||||||||+++++|+.+.++++++++|++||||.+||||..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~d 463 (582)
+||+|||||||+|.++.||..+|++|++.|+++.++++++|+..+|+.|+||+++||+|++|||++.|.|+++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCccCccc-cccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHHHH
Q 007989 464 IDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFA 542 (582)
Q Consensus 464 l~~A~~~v~~g~~~~~~-~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l~~ 542 (582)
|++|++++++|.++++. .++++++.+||||+|||+++++++++++++|+||+|||+++|||+++|++|++++|+.++++
T Consensus 383 i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~ 462 (596)
T COG0465 383 IEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLD 462 (596)
T ss_pred hHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHH
Confidence 99999999999999885 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 543 RIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 543 ~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
+|+++||||||||++||. ++||||+||+++||++||.||
T Consensus 463 ~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mV 501 (596)
T COG0465 463 RIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMV 501 (596)
T ss_pred HHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhh
Confidence 999999999999999998 899999999999999999997
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-94 Score=759.57 Aligned_cols=359 Identities=57% Similarity=0.879 Sum_probs=347.5
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
..+...+++|+||.|+|++|++|+|+|++|++|++|.++|.+.||||||+||||||||+||||+|+|+++|||+.++++|
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF 373 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF 373 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
-++|+|++++++|++|..|+..+||||||||||++|.+|.... ..+..|++||||.+||||..+.+||||+|||.|+
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 9999999999999999999999999999999999999986521 2278999999999999999999999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 460 (582)
.||+||.||||||++|.++.||..+|.+||+.|+.+.+++.++|+..||+.|+||+|+||+|+||.|++.|+..+...|+
T Consensus 451 ~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~Vt 530 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVT 530 (752)
T ss_pred hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCccCccc-cccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHH
Q 007989 461 SKEIDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQ 539 (582)
Q Consensus 461 ~~dl~~A~~~v~~g~~~~~~-~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~ 539 (582)
+.+++.|.|++++|.+++.+ .+++.++++||||.|||||+.++.++.|++|+||.|||.++|.|.++|+.|++.+||.+
T Consensus 531 M~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q 610 (752)
T KOG0734|consen 531 MKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQ 610 (752)
T ss_pred HHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHH
Confidence 99999999999999999876 47788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 540 LFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 540 l~~~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
+++++.+|||||+|||++||.+++|+||++||++||++|++||
T Consensus 611 ~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MV 653 (752)
T KOG0734|consen 611 LLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMV 653 (752)
T ss_pred HHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-90 Score=764.13 Aligned_cols=486 Identities=57% Similarity=0.897 Sum_probs=406.0
Q ss_pred CccccHHHHH-HHHhcCCeeEEEEeeCceEEEEEecCccCCC--ceeEEEEEcCCCcHHHHHHHHh----cCcce-eecc
Q 007989 93 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFRE----KNIDF-AAHN 164 (582)
Q Consensus 93 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----~~~~~-~~~~ 164 (582)
..+++|.+|+ ++++.|.|.++.+...-....++........ ..+.+...+-. .+.+.++|.. -+++. ...+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4589999997 6899999999988642211111111111100 11222222221 2334444432 23321 1112
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCCCCCCccccccccc--ccccccCCCCcccccccchHHHH
Q 007989 165 AQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAKQ 241 (582)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dI~G~d~~k~ 241 (582)
........+...+..+++.+++++.++++.|++.+ +.+++++..+++.|+.++. ++..+..++++|+||+|++++|+
T Consensus 242 V~~~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK~ 321 (774)
T KOG0731|consen 242 VTYISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAKE 321 (774)
T ss_pred eEEeecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHHH
Confidence 11111122333333333337788888888888764 1223334344555665555 67778888899999999999999
Q ss_pred HHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhh
Q 007989 242 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE 321 (582)
Q Consensus 242 ~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~ 321 (582)
+|+|+|++|++|++|+++|+++|||+||+||||||||+||||+|+|+++||+.+++++|+++++|.+++++|++|..|+.
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~ 401 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARK 401 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcccccCC-CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccC
Q 007989 322 NAPCIVFVDEIDAVGRQRG-TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~~r~-~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~ 400 (582)
++||||||||||+++++|+ .+.+++++++++++||||.+||||..+.+|+|+|+||+++.||+||+|||||||+|.+++
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 9999999999999999994 456688999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcc
Q 007989 401 PDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV 479 (582)
Q Consensus 401 Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~ 479 (582)
||..+|.+|++.|+++.+++ +++++..+|.+|+||+|+||+|+||+|++.|+|++...|+..|+++|+++++.|.+++.
T Consensus 482 p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~ 561 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKS 561 (774)
T ss_pred CchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccc
Confidence 99999999999999999996 78889999999999999999999999999999999999999999999999999988765
Q ss_pred -ccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhh
Q 007989 480 -MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 558 (582)
Q Consensus 480 -~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~ 558 (582)
..+.++++.+||||+|||+++|++++.+|+.||+|+| |+++||+++.|.++ +++|+++|+++||++|||||||+++|
T Consensus 562 ~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~f 639 (774)
T KOG0731|consen 562 RVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVVF 639 (774)
T ss_pred hhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHHHHHHHHHHhCcchhhheec
Confidence 4578899999999999999999999999999999999 66999999999876 99999999999999999999999999
Q ss_pred CCCCcccChhhHHHHHHHHHHhcC
Q 007989 559 GEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 559 g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
| +++||||++||++||++|+.||
T Consensus 640 g-~~iTtga~ddl~kvT~~A~~~V 662 (774)
T KOG0731|consen 640 G-SEITTGAQDDLEKVTKIARAMV 662 (774)
T ss_pred C-CccCchhhccHHHHHHHHHHHH
Confidence 9 6899999999999999999997
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=7.9e-87 Score=748.28 Aligned_cols=488 Identities=72% Similarity=1.112 Sum_probs=435.5
Q ss_pred CCCccccHHHHHHHHhcCCeeEEEEeeCceEEEEEecCccCCCceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCcch
Q 007989 91 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 170 (582)
Q Consensus 91 ~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (582)
...++++||+|++++++|+|++|.+.+++....+....+..+.....+.+..|..++++++.|.++++++...+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 455679999999999999999999987654333322222212233456667775578999999999999988765443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccccccccccCCCCcccccccchHHHHHHHHHHHHh
Q 007989 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 250 (582)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l 250 (582)
++|...+.++++|++++++++|++.+.....+ +.....++++++++++.......++|+||+|++++|+++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKG--GPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 56777777887788777766655444322111 1112467899999888888888899999999999999999999999
Q ss_pred cCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEe
Q 007989 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 251 ~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfID 330 (582)
++++.|..+|.++|+|+||+||||||||++|+++|+++++||+++++++|.+.+.|.+.++++++|+.|+..+|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHH
Q 007989 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (582)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il 410 (582)
|||+++.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||+++.+++|+.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 99999999887777788899999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhH
Q 007989 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 490 (582)
Q Consensus 411 ~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va 490 (582)
+.|+++..+.+++++..+|..|+|||++||+++|++|++.|.++++..|+.+||++|+++++.|.+++...++++++++|
T Consensus 363 ~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA 442 (638)
T CHL00176 363 KVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIA 442 (638)
T ss_pred HHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999998877666778899999
Q ss_pred HHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcccChhhH
Q 007989 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (582)
Q Consensus 491 ~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~ga~~D 570 (582)
|||+||||+++++++++++++|||+|||+++||+++.|+++.+++||.+|+++|+++|||||||+++||++++|+||++|
T Consensus 443 ~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D 522 (638)
T CHL00176 443 YHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASND 522 (638)
T ss_pred HHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987899999999
Q ss_pred HHHHHHHHHhcC
Q 007989 571 LQQITGLAKQVI 582 (582)
Q Consensus 571 l~~at~~a~~mv 582 (582)
|++||+||++||
T Consensus 523 l~~AT~iA~~mv 534 (638)
T CHL00176 523 LQQVTNLARQMV 534 (638)
T ss_pred HHHHHHHHHHHH
Confidence 999999999997
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.3e-78 Score=684.06 Aligned_cols=501 Identities=51% Similarity=0.825 Sum_probs=436.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCceEEEEEecCccCCCceeEEEEE
Q 007989 62 RGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 141 (582)
Q Consensus 62 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (582)
++.+.|++++++++.++..+... ......++|+.|.+.+.++.+.++.+..+ .+. .. ..+ + ..+...
T Consensus 3 ~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tIK-~~--~~e-~---~~~~~~ 69 (644)
T PRK10733 3 KNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EIN-VT--KKD-S---NRYTTY 69 (644)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EEE-EE--EcC-C---ceEEEe
Confidence 56778877776666555554331 12345799999999999999999987532 221 11 111 1 233444
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccccccc
Q 007989 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (582)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 221 (582)
.|..++.++..+.++++.+........ .++..++..+.+.++++++++++.++++.+ ++...+.|++++..+.
T Consensus 70 ~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~~ 142 (644)
T PRK10733 70 IPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARML 142 (644)
T ss_pred CCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEecccccccc
Confidence 565567889999999998877654432 445555555556666677777777776533 1234678888888887
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.......+|+|+.|.+.+++++.++++++++++.|..++...|+|+||+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 77667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
+.+.+.++.+++++|+.++..+||||||||+|+++.+|+.+.++++.+..++++++|.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999999887777888999999999999999999999999999999999
Q ss_pred ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 007989 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (582)
Q Consensus 382 LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~ 461 (582)
||++++||||||+++.+++||.++|.+||+.|+++.++..++++..+|+.|+|||++||.++|++|+..|.++++..|+.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccCcc-ccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHH
Q 007989 462 KEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQL 540 (582)
Q Consensus 462 ~dl~~A~~~v~~g~~~~~-~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l 540 (582)
.|+++|++++..+.+++. ....++++.+||||+|||+++++++..+++++|+|+|||.++||+++.|.++..++||.+|
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 999999999999887654 3456788999999999999999999999999999999999999999999989989999999
Q ss_pred HHHHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 541 FARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 541 ~~~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
+++|+++|||||||+++||++++||||+|||++||+||++||
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv 504 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMV 504 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999999999999997
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3e-71 Score=612.08 Aligned_cols=402 Identities=66% Similarity=1.056 Sum_probs=368.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCCCCCCcccccccccccccccCCCCcccccccchHHHHHHHHHHHHhc
Q 007989 173 LFNLIGNLAFPLILIGG-LFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251 (582)
Q Consensus 173 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~ 251 (582)
|.+++.++.+|+++++. |+++.++..++ | +..+.++++++++..+..+.++|+||+|++++|+++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 45666666675655554 44455555532 1 34467889999999888999999999999999999999999999
Q ss_pred CchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeC
Q 007989 252 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (582)
Q Consensus 252 ~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 331 (582)
+++.|...|.++|+|+||+||||||||++|+++|+++++||+.+++++|.+.+.|.+.+.++++|+.|+..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHH
Q 007989 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (582)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~ 411 (582)
||.++.+++.+.++.+++..+++++||.+||++..+.+++||+|||+++.||++++||||||+.|++++|+.++|.+|++
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999888776666678888999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCcc-ccccccchhhH
Q 007989 412 VHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVA 490 (582)
Q Consensus 412 ~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~-~~~~~~k~~va 490 (582)
.++++.++..++++..++..+.|||++||+++|++|+..|.++++..|+.+|+++|++++..+.+.+. ..++++++.+|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99998888888899999999999999999999999999999999999999999999999998876543 34667889999
Q ss_pred HHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcccChhhH
Q 007989 491 YHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGD 570 (582)
Q Consensus 491 ~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~ga~~D 570 (582)
+||+||||++++++..+++++++|.|||.++||+++.|.++....|+.+++++|+++|||||||+++|| ++|+||++|
T Consensus 316 ~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G--~~s~Ga~~D 393 (495)
T TIGR01241 316 YHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFG--EVTTGASND 393 (495)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhc--CCCCCchHH
Confidence 999999999999998899999999999999999999998888899999999999999999999999999 589999999
Q ss_pred HHHHHHHHHhcC
Q 007989 571 LQQITGLAKQVI 582 (582)
Q Consensus 571 l~~at~~a~~mv 582 (582)
|++||++|+.||
T Consensus 394 l~~At~lA~~mv 405 (495)
T TIGR01241 394 IKQATNIARAMV 405 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999999996
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-64 Score=515.01 Aligned_cols=259 Identities=45% Similarity=0.770 Sum_probs=252.4
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.+.+++.+.++|+||.|+++++++++|.|+. |++|+.|..+|+++|+|||||||||||||+||||+|++.++.|+.+.+
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 4567788999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
|+|+.+|+|++++.+|++|+.|+.++||||||||||+++.+|.....+++.|.|+++.+||++||||.+..+|-||+|||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~ 457 (582)
+++.|||||+|||||||.|+||+||.++|.+||+.|.+++.+.+++|++.+|+.++|+|||||.++|.||.++|.|+.+.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcCccC
Q 007989 458 AISSKEIDDSIDRIVAGMEG 477 (582)
Q Consensus 458 ~It~~dl~~A~~~v~~g~~~ 477 (582)
.||++||.+|+++++....+
T Consensus 379 ~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 379 EVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred eecHHHHHHHHHHHHhcccc
Confidence 99999999999999876543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6.3e-56 Score=520.93 Aligned_cols=292 Identities=18% Similarity=0.310 Sum_probs=256.1
Q ss_pred hhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh-------------------------------
Q 007989 256 FTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------- 304 (582)
Q Consensus 256 ~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~------------------------------- 304 (582)
+.++|+.+|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4578999999999999999999999999999999999999999998643
Q ss_pred ------------hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc---CCCC
Q 007989 305 ------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTG 369 (582)
Q Consensus 305 ------------vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~---~~~~ 369 (582)
.+++..+++.+|+.|++++||||||||||+++.+ ++...++++|+.+||+.. ...+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCCC
Confidence 2233446899999999999999999999999754 223357899999999864 4568
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHH--cCCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH--GSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~--l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~e 446 (582)
|+||||||+|+.|||||+||||||+.|.|+.|+..+|++++..+ .++..+..+ +|++.+|+.|+|||||||+++|||
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNE 1852 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNE 1852 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864 455555543 679999999999999999999999
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecC------CCc
Q 007989 447 AAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR------GQA 520 (582)
Q Consensus 447 A~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~pr------g~a 520 (582)
|+..|.++++..|+.++++.|++++++|.+.+... ..++ .+++||+||||++.++++.+|+++|||+++ +.+
T Consensus 1853 AaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~-~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~ 1930 (2281)
T CHL00206 1853 ALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRS-VQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDS 1930 (2281)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccC-cchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCccc
Confidence 99999999999999999999999999998765432 2333 479999999999999999999999999632 457
Q ss_pred ceEEEeccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCC
Q 007989 521 RGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGE 560 (582)
Q Consensus 521 ~g~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~ 560 (582)
.||+|++|.+ ++++|.+++.+|++||||||||++||+.
T Consensus 1931 yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~ 1968 (2281)
T CHL00206 1931 YLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLP 1968 (2281)
T ss_pred ceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCc
Confidence 7999999865 8999999999999999999999999975
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-51 Score=447.80 Aligned_cols=250 Identities=44% Similarity=0.777 Sum_probs=237.2
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
..+.++++|+||+|++++|++|++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++++|+++.+.++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence 3567899999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
.++|+|++++.++++|++|+..+|||||+||||+++..|+... +.-..+++++||++|||+....+|+||||||+|+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 9999999999999999999999999999999999999997422 2567789999999999999999999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--CCc
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG--KAA 458 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~--~~~ 458 (582)
.||+||+||||||+.|+|++||.+.|.+||+.++++.++.+++|++.||..|+|||||||.++|++|+..|.++. -..
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~ 661 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATE 661 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 468
Q ss_pred cCHHHHHHHHHHHHcC
Q 007989 459 ISSKEIDDSIDRIVAG 474 (582)
Q Consensus 459 It~~dl~~A~~~v~~g 474 (582)
|+.+||++|+..+...
T Consensus 662 i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 662 ITWQHFEEALKAVRPS 677 (693)
T ss_pred ccHHHHHHHHHhhccc
Confidence 8999999999876443
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=396.42 Aligned_cols=325 Identities=34% Similarity=0.571 Sum_probs=291.4
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccccccc
Q 007989 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (582)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 221 (582)
+|-...++++...++.--+.....+ ++++.+++.+.--++.....+.+.++++.-.. -.|.....|-..+.
T Consensus 75 vplvigqfle~vdqnt~ivgsttgs----ny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~ 145 (408)
T KOG0727|consen 75 VPLVIGQFLEAVDQNTAIVGSTTGS----NYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLG 145 (408)
T ss_pred cchHHHHHHHhhhccCceeecccCC----ceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccC
Confidence 3433456777766665544443322 67888999888889988888889998775432 22333444444555
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
...++.+++.||.|+|-+|++++|.++. |.+.+.|++.|+++|+|||||||||||||+||+|+|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 6678899999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
+.+|.|++++.+|++|+.|+.++|+||||||||++..+|.....+.+.+.++.+.+||++||||....+|-||.|||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 460 (582)
.|||+|+||||+||.|+||+||..+++-++.....+..+++++|++.+..+.+..|++||..+|++|.+.|.|+++-.|.
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 007989 461 SKEIDDSIDRIVAGM 475 (582)
Q Consensus 461 ~~dl~~A~~~v~~g~ 475 (582)
..||++|...++...
T Consensus 386 ~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 386 QKDFEKAYKTVVKKD 400 (408)
T ss_pred HHHHHHHHHhhcCCc
Confidence 999999998876543
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-49 Score=421.20 Aligned_cols=247 Identities=44% Similarity=0.741 Sum_probs=230.8
Q ss_pred CCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
-++++|+||.|+++++.+|...+.+ +++|+.|+++|...|.||||+||||||||+||||+|+|++.+|+.+.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4789999999999999999987666 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
|+|++++.+|.+|..|+..+|||||+||+|+|.++|+.+. .....+++||||++|||.+.+.+|.||||||+||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999998743 4556789999999999999999999999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcC--CCCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHhC----
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRRG---- 455 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~--~~~l~~dvdl~~lA~~t~--G~sgadL~~lv~eA~~~A~r~~---- 455 (582)
||++||||||+..++++|+.++|.+||+.+.+ +.+++.|+|++.||+.+. |||||||+.+|++|.+.|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778999999999999887 9999999999999999998762
Q ss_pred ------------CCccCHHHHHHHHHHHHcC
Q 007989 456 ------------KAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 456 ------------~~~It~~dl~~A~~~v~~g 474 (582)
...++..||++|+.++.+.
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1236677999999887654
No 12
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-49 Score=387.89 Aligned_cols=269 Identities=41% Similarity=0.712 Sum_probs=257.2
Q ss_pred cccccccccccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 210 PLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 210 ~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
|.....|-..+.++.++.++++||.|+.++++.++|+++. +-+|++|..+|+.+|+|||||||||||||++|||+|++.
T Consensus 156 ppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 156 PPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred CCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3345666677788899999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 007989 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (582)
Q Consensus 289 ~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~ 368 (582)
+..|+.+-+|+++.+|+|++++.+|++|+.|+....||||+||||++++.|.....+++.+.+++..+|+.++|||.+..
T Consensus 236 dacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg 315 (435)
T KOG0729|consen 236 DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 315 (435)
T ss_pred CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988777788899999999999999999999
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
++-|+.|||+|+.|||+|+||||+||.++|.+||+++|..||+.|.+......++-++.+|+.++.-+|++|+.+|.+|.
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteag 395 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAG 395 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHHcCccCc
Q 007989 449 ILAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~~v~~g~~~~ 478 (582)
++|.+..+...|..||.+|+++++.|..+-
T Consensus 396 mfairarrk~atekdfl~av~kvvkgy~kf 425 (435)
T KOG0729|consen 396 MFAIRARRKVATEKDFLDAVNKVVKGYAKF 425 (435)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887653
No 13
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-50 Score=397.39 Aligned_cols=300 Identities=34% Similarity=0.614 Sum_probs=273.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccccccccccCCCCcccccccchHHHHHHHHHHHH-
Q 007989 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 249 (582)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~- 249 (582)
.+++++++.+..-++-.++.+++..+.....|-......||. .-+..++.+.-+|+||.|++.+++++.|.++.
T Consensus 130 e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv-----~vmK~eKaP~Ety~diGGle~QiQEiKEsvELP 204 (440)
T KOG0726|consen 130 EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMV-----SVMKVEKAPQETYADIGGLESQIQEIKESVELP 204 (440)
T ss_pred hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccc-----eeeecccCchhhhcccccHHHHHHHHHHhhcCC
Confidence 567888877777888888887776654433221122223332 12445677788999999999999999999998
Q ss_pred hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEE
Q 007989 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 250 l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
|.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+-+++++.+|.|.+++.+|++|+.|..++|+|+||
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHH
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I 409 (582)
||||++|.+|-...+++..+.++++.+||+++|||.++..|-||.|||+.+.|||+|+||||+||.|+|+.||...++.|
T Consensus 285 DEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 285 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI 364 (440)
T ss_pred ehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 007989 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (582)
Q Consensus 410 l~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~ 475 (582)
|..|..+..+..+++++.+....+.+||+||..+|.+|.++|.|+.+..|+++||..|.++++...
T Consensus 365 f~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 365 FQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred EEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999999889999999999999999999999999999999999999998654
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-48 Score=378.88 Aligned_cols=258 Identities=40% Similarity=0.707 Sum_probs=248.6
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
.+++-++-+++-|.|.+.++++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.+|+++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 34556677999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
++.+|.|++.+.+|++|-.|+.++|+|||.||||.+|..|..+.++++.+.+++..+||+++|||+...++-||.|||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~I 459 (582)
+.|||||+||||+||.|+||+|+.+.|.+|++.|.++.++...+++..+|...+|.||+++..+|.+|.++|.|+.+-.|
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhv 376 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHV 376 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCccCc
Q 007989 460 SSKEIDDSIDRIVAGMEGT 478 (582)
Q Consensus 460 t~~dl~~A~~~v~~g~~~~ 478 (582)
|++||+-|+.+++.....+
T Consensus 377 tqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 377 TQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred cHHHHHHHHHHHHhccccc
Confidence 9999999999998765433
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-48 Score=380.86 Aligned_cols=255 Identities=38% Similarity=0.692 Sum_probs=245.3
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
+.++..+.-+++||.|++.++++|.|.+-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+.
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP 239 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP 239 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcch
Confidence 445667788999999999999999986655 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
.++.+|.|.+++.+|+.|..|+..+|+||||||+|++|.+|..+...++.+.+++..+||+++|||.++..|-||||||+
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~ 458 (582)
.+.|||+|+|+||+||.|+||.|+.+.|.+|++.|.++....++++++++|+.|++|+|+++..+|-+|.+.|.|++...
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcC
Q 007989 459 ISSKEIDDSIDRIVAG 474 (582)
Q Consensus 459 It~~dl~~A~~~v~~g 474 (582)
|+.+||.+++..+...
T Consensus 400 v~heDfmegI~eVqak 415 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQAK 415 (424)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999887653
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-46 Score=399.33 Aligned_cols=228 Identities=46% Similarity=0.778 Sum_probs=216.7
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
+.++++|+||.|++....+|.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC----CCeEEEEecCcc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 379 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~----~~viVIaaTN~~ 379 (582)
+.|++++++|++|++|+..+|||+||||||+++++|.. .+.+...+.+.|||+.||++... ..|+||+|||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999976 23444567899999999998654 579999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
|.|||+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||..|+||.||||..+|.+|+..|.+|
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=380.07 Aligned_cols=254 Identities=42% Similarity=0.692 Sum_probs=239.8
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
..+..++++|+||+|++.+|+++++.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++.+.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34567889999999999999999999875 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
+...|+|.+...++++|..|+..+||||||||+|.++.+|.....+.+.+.++.+.+++.++|++....+++||+|||++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998886554455667788999999999999888899999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~I 459 (582)
+.+||+++||||||+.|++++|+.++|.+||+.++.+..+..++++..++..|+||||+||.++|++|.+.|.++++..|
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 007989 460 SSKEIDDSIDRIVAG 474 (582)
Q Consensus 460 t~~dl~~A~~~v~~g 474 (582)
+.+||.+|+.+++.+
T Consensus 375 ~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 375 LPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998765
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.7e-44 Score=349.78 Aligned_cols=242 Identities=38% Similarity=0.662 Sum_probs=225.1
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+..++++|+||+|++++|+..+-++++|.+|++|..+ .|++||+|||||||||++|+|+|+++++||+.+.+.++..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3457899999999999999999999999999998766 5889999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.++|.++++++++|+.|++.+|||+||||+|+++-.|..+.-.| .....+|.||++|||...+.+|+.|||||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999986665422111 2456899999999999999999999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHhCCCccCH
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA-NLLNEAAILAGRRGKAAISS 461 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~-~lv~eA~~~A~r~~~~~It~ 461 (582)
|+++++ ||...|+|.+|+.++|.+|++.++++.++.-+.+++.++..|.||||+||. .++..|...|..+++..|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999999999999999999999996 68889999999999999999
Q ss_pred HHHHHHHHHH
Q 007989 462 KEIDDSIDRI 471 (582)
Q Consensus 462 ~dl~~A~~~v 471 (582)
+|++.|+.+.
T Consensus 346 edie~al~k~ 355 (368)
T COG1223 346 EDIEKALKKE 355 (368)
T ss_pred HHHHHHHHhh
Confidence 9999999873
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=363.16 Aligned_cols=245 Identities=37% Similarity=0.624 Sum_probs=223.4
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..++++|+||+|+.++|+-|+|.|-. +..|+.|+. ..++-||||++||||||||+||||+|.|++..||.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 56789999999999999999997766 888887663 3566799999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC-CC---eEEEEecCc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAATNR 378 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~-~~---viVIaaTN~ 378 (582)
+|-|++++.+|-+|+.|+..+|++|||||||+|+.+|+.. +.++...++-++||.+|||.... .+ |+|+||||.
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 9999999999999999999999999999999999999763 56777888999999999998653 34 899999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC--
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK-- 456 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~-- 456 (582)
|+.||+||+| ||..+|+||+||.++|..+++..++....+++++++.|+..++||||+||.++|++|.+.+.|+.-
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g 439 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAG 439 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999998621
Q ss_pred ---------------CccCHHHHHHHHHHHHc
Q 007989 457 ---------------AAISSKEIDDSIDRIVA 473 (582)
Q Consensus 457 ---------------~~It~~dl~~A~~~v~~ 473 (582)
..|++.||++|+.++.+
T Consensus 440 ~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 440 LTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred CCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 23778888888887654
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-43 Score=384.48 Aligned_cols=249 Identities=39% Similarity=0.705 Sum_probs=224.3
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.+-|+|+|+||+|.+++|.++++-++. |++|+.|. .|.+...|||||||||||||++|||+|.|+...|+++.+.++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 356899999999999999999999988 99998765 5677778999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc--CCCCeEEEEecCcc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRA 379 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~--~~~~viVIaaTN~~ 379 (582)
+||+|++++++|++|++|+..+|||||+||+|.++++||....+| .-..+++.|||.|||++. +..+|+||+|||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998743332 246789999999999998 46789999999999
Q ss_pred ccccccccCCCCccceeeccCCC-HHHHHHHHHHHcCCCCCCccccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhC--
Q 007989 380 DILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFDADVSLDVIAMRTP-GFSGADLANLLNEAAILAGRRG-- 455 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd-~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~-G~sgadL~~lv~eA~~~A~r~~-- 455 (582)
|.|||+|+||||||+.+++.+++ .+.+..+|+...++.++++++|+.++|+.++ .|||||+-.+|-.|.+.|.+|.
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999885 5568889999999999999999999999875 6999999999999999998862
Q ss_pred ---------------CCccCHHHHHHHHHHHHc
Q 007989 456 ---------------KAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 456 ---------------~~~It~~dl~~A~~~v~~ 473 (582)
.-.|+++||.++.++..+
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 125678888888887654
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.7e-42 Score=370.49 Aligned_cols=259 Identities=46% Similarity=0.753 Sum_probs=242.3
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
+.....+.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|.+++.+|+.++++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 344566789999999999999999998877 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++...|.|.+...++.+|+.++..+||||||||+|.++.+++....+++.+.++++.+++.+++++....+++||+|||+
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999888765555567788899999999999888889999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~ 458 (582)
++.+|++++||||||+.|+|++|+.++|.+||+.|+++..+..++++..++..|+||+++||+++|++|+..|.++++..
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~ 359 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTE 359 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCccCc
Q 007989 459 ISSKEIDDSIDRIVAGMEGT 478 (582)
Q Consensus 459 It~~dl~~A~~~v~~g~~~~ 478 (582)
|+.+||.+|++++.......
T Consensus 360 i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 360 VTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred cCHHHHHHHHHHHhcccccc
Confidence 99999999999997765544
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.2e-42 Score=370.58 Aligned_cols=254 Identities=39% Similarity=0.705 Sum_probs=240.4
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
..+..+.++|+||.|++++++++.+.+.. +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 35566789999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
+...|.|.++..++.+|+.|....||||||||||+++.+|....+++..+.+.++.++|.++|++....++.||+|||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998887665666777888999999999999888899999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~I 459 (582)
+.+|++++||||||+.|+|++||.++|.+||+.|+.+..+..+++++.++..+.|||++||.++|++|++.|.++++..|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 007989 460 SSKEIDDSIDRIVAG 474 (582)
Q Consensus 460 t~~dl~~A~~~v~~g 474 (582)
+.+||.+|+++++..
T Consensus 413 t~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 413 TQADFRKAKEKVLYR 427 (438)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
No 23
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=340.55 Aligned_cols=252 Identities=39% Similarity=0.670 Sum_probs=240.7
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
.+....++|+++.|.-++..++++.++. +.+|+.|.++|+++|++++||||||||||++|+++|...+++|+.++.+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 3445678999999999999999998887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
++.+.|+.++.+|+.|..|+...|||||+||||++++++.+.....+.+.+.||-+|+++||++.....|-+|+|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 99999999999999999999999999999999999999977777788899999999999999999999999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 460 (582)
.|||+|+||||+|+.+++|+|+...|..|++.|........++|.+.+.+..+||+++|+++.|.||-..|.+..+..+-
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl 362 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVL 362 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHh
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 007989 461 SKEIDDSIDRIVA 473 (582)
Q Consensus 461 ~~dl~~A~~~v~~ 473 (582)
.+|+..++.++..
T Consensus 363 ~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 363 HEDFMKLVRKQAD 375 (388)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=363.11 Aligned_cols=245 Identities=48% Similarity=0.790 Sum_probs=229.8
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..+.++|+|++|++++|+++.+.+.+ ++.++.|...|.++|+|+|||||||||||+||+|+|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45689999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
+|+|++++.++.+|..|+..+||||||||+|++...|+.+. +......++++|.+|++.+...+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999887532 222368999999999999999999999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCcc
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAI 459 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~-~~~I 459 (582)
|++++||||||+.++|++||..+|.+|++.|++... +..+++++.++..|+||+++||.++|++|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4688999999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHH
Q 007989 460 SSKEIDDSIDRI 471 (582)
Q Consensus 460 t~~dl~~A~~~v 471 (582)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999884
No 25
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.7e-39 Score=346.29 Aligned_cols=252 Identities=47% Similarity=0.780 Sum_probs=236.3
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
+.....+.++|+||+|++++++++.+.+.. +.+++.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 445567889999999999999999998876 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++...+.|.+...++.+|+.++...||||||||+|.++..+.....++..+.+.++.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998887665555667778899999999999877788999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~ 458 (582)
++.+|++++||||||+.|+|++|+.++|.+|++.++.+..+..++++..++..++||+++||.++|++|...|.++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 007989 459 ISSKEIDDSIDRI 471 (582)
Q Consensus 459 It~~dl~~A~~~v 471 (582)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999876
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-40 Score=357.32 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=217.3
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.+++.|+||+|+.++|+.+++.+++ -+.|..|.+.+.+.+.|||||||||||||+||-|+|...+..|+.+.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 45669999999999999999999998 78899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
+|.|.++..+|++|+.|+..+|||||+||+|.++++||-+..|- ..+++||||++|||.+.-.+|.|+|||.+|+.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV---TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc---hHHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 99999999999999999999999999999999999998755443 457999999999999999999999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
||||+||||+|+.++.++|+..+|.+|++........+.++|++.+|..|+|||||||..++..|.+.|.++
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988765
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-39 Score=374.72 Aligned_cols=247 Identities=45% Similarity=0.762 Sum_probs=229.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.+.++|+||+|++.+|++|.+.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|.+++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
|+|.+++.++.+|+.|+..+||||||||||+++..|+... .....+..+++||.+||++....+++||+|||+|+.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998886432 23346779999999999998888999999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~-------- 455 (582)
++++||||||+.+++++||.++|.+||+.+.++.++.++++++.+|..|+||||+||.++|++|+..|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ----------CCccCHHHHHHHHHHHHc
Q 007989 456 ----------KAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 456 ----------~~~It~~dl~~A~~~v~~ 473 (582)
...|+.+||.+|+.++.+
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987644
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-40 Score=329.60 Aligned_cols=227 Identities=35% Similarity=0.632 Sum_probs=205.2
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
+..++++.|+||+|++.+|+.|+|.|.. ++.|+.|.. +.++-+|+||||||||||++||+|+|.|++-.||+++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 4567899999999999999999998766 788877662 23456899999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCcc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~~ 379 (582)
+++|+|++++.++.+|+.|+.+.|+||||||||.+++.|+.+ .++...+.-.+||.+|.|... +.+|+|++|||.|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999888763 345566788899999999865 4689999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
+.||.|++| ||+++|+||+|+...|..+++.|+...+.. .+.|+..|++.|+||||+||.-+|+.|.+.-.|+
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887654 5678999999999999999999999999888765
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9e-39 Score=350.00 Aligned_cols=243 Identities=26% Similarity=0.450 Sum_probs=215.1
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
.+.++|+||+|++.+|+++.+....+ +..+...|.+.|+|+|||||||||||++|+++|++++.||+.++++.+...+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999999866543 3445678999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc
Q 007989 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 305 vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~ 384 (582)
+|.++.+++.+|+.|+..+||||||||||.++..+... +......+.+++++..|+. .+.+++||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654332 2234566788899998874 3567999999999999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~--~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 462 (582)
+++|+||||+.+++++|+.++|.+||+.|+++.... .+.+++.+|..|+||||+||+++|++|+..|..+++ .++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHH
Confidence 999999999999999999999999999999876533 478899999999999999999999999999987764 58999
Q ss_pred HHHHHHHHHHcC
Q 007989 463 EIDDSIDRIVAG 474 (582)
Q Consensus 463 dl~~A~~~v~~g 474 (582)
|+..|+.++.+-
T Consensus 455 dl~~a~~~~~Pl 466 (489)
T CHL00195 455 DILLALKQFIPL 466 (489)
T ss_pred HHHHHHHhcCCC
Confidence 999999887653
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=327.16 Aligned_cols=225 Identities=40% Similarity=0.640 Sum_probs=209.7
Q ss_pred CCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g-~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.-.++|+||.|++++++++++.|.. ++.|+.|..-+ .++|+||||+||||||||++|+|+|.+++.+|+.++++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3468999999999999999998877 99999886333 468899999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC--eEEEEecCccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRAD 380 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~--viVIaaTN~~~ 380 (582)
+|+|++.+.++.+|..|.+..||||||||+|.+.+.|+ .+.++.....-++|+..+||+.++.+ |+|+||||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999998884 34577778889999999999988765 99999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
.||.|++| |+.++++|++|+..+|.+||+..+++.++++++|+..+|..|.||||.||.++|+.|+...+++
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999988775
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.7e-36 Score=326.07 Aligned_cols=255 Identities=34% Similarity=0.590 Sum_probs=210.2
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 291 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------- 291 (582)
+..+..++++|+||+|++++++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 345667889999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred ---EEEeechhHHHHhhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 007989 292 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (582)
Q Consensus 292 ---fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~ 364 (582)
|+.++++++..+|+|++++.++.+|+.++.. .||||||||+|.++++|+.+. .++.....+++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhccc
Confidence 6677788999999999999999999998764 699999999999998886532 2334456789999999999
Q ss_pred cCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC-CCCCc---------cccHHHHHH----
Q 007989 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-KKFDA---------DVSLDVIAM---- 430 (582)
Q Consensus 365 ~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~-~~l~~---------dvdl~~lA~---- 430 (582)
....+++||+|||+++.|||+++||||||++|+|++|+.++|.+||+.++.. .++.. ..+...+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999864 23311 111222211
Q ss_pred -------------------------hCCCCcHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHcCcc
Q 007989 431 -------------------------RTPGFSGADLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGME 476 (582)
Q Consensus 431 -------------------------~t~G~sgadL~~lv~eA~~~A~r~----~~~~It~~dl~~A~~~v~~g~~ 476 (582)
.++.+||++|+++|.+|...|..+ +...|+.+|+..|+..-....+
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~ 483 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESE 483 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccc
Confidence 145578888888888888777755 3457888888888877654433
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=315.70 Aligned_cols=279 Identities=36% Similarity=0.602 Sum_probs=243.7
Q ss_pred CCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
..++ .++.|.......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhCC-CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 305 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 305 vG~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
.|++++.+|..|++|.+.+ |++|||||+|+++++|... ..-..++..+++..||+..+..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 9999999999999988652 2235678899999999999889999999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~d 463 (582)
++++| ||||+.+++..|+..+|.+|++.+.+++++.+++++..+|..+.||.|+||..+|++|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999888 8899
Q ss_pred HHHHHHHHHcCccCccccccccchhhHHHHHH---------HHHHHhhcCCCCCCCceeeecCC
Q 007989 464 IDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG---------HAICGTLTPGHDPVQKVTLVPRG 518 (582)
Q Consensus 464 l~~A~~~v~~g~~~~~~~~~~~k~~va~hEaG---------halv~~~~~~~~~v~kvti~prg 518 (582)
+..|...+.+...+.... +...+.|.++| ..-|.|-+.+.+...+..|.|..
T Consensus 409 ~~~A~~~i~psa~Re~~v---e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppk 469 (693)
T KOG0730|consen 409 FQEALMGIRPSALREILV---EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPK 469 (693)
T ss_pred HHHHHhcCCchhhhheec---cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCc
Confidence 999988777665554332 12224444444 22244555555556666665543
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.6e-33 Score=290.38 Aligned_cols=263 Identities=17% Similarity=0.208 Sum_probs=199.0
Q ss_pred CCCccccc-ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 226 TGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 226 ~~~~f~dI-~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
...+|+++ .|+--.+.-+..++..+... ....+|.++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34678888 66666666665555332211 12236889999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhh-----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc------------cCC
Q 007989 305 VGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------------EGN 367 (582)
Q Consensus 305 vG~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~------------~~~ 367 (582)
+|++++.+|++|+.|.. .+||||||||||+++++|+.. ......+.+..+|++.||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 479999999999999988632 12222333347888888753 345
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCC----CcHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG----FSGADLANL 443 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G----~sgadL~~l 443 (582)
.+|+||+|||+|+.|||+|+||||||+.+ .+|+.++|.+|++.++++..++ ..++..|+..++| |.||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 67999999999999999999999999864 5899999999999999998876 5789999999988 667766777
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHh
Q 007989 444 LNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGT 501 (582)
Q Consensus 444 v~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~ 501 (582)
..++...-..+- -++..-.+++...++........-.+-.+-|+||.++..
T Consensus 344 yd~~v~~~i~~~-------g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 344 YDDEVRKWIAEV-------GVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHHHh-------hHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 777665443321 233333334433333223333344556888999999864
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=303.17 Aligned_cols=280 Identities=33% Similarity=0.540 Sum_probs=228.1
Q ss_pred ccCCCCccccc--ccchHHHHHHH--HHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEeec
Q 007989 223 EPNTGVTFDDV--AGVDEAKQDFM--EVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISG 297 (582)
Q Consensus 223 ~~~~~~~f~dI--~G~d~~k~~L~--e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-pfi~is~ 297 (582)
.-.++..|+++ .|++..-..+- .++..+--|+...++|.+.-||+|||||||||||++||.+..-++. +--.+++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 34567888875 67766555443 2455578889999999999999999999999999999999987754 4456899
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhC--------CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~--------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~ 369 (582)
.+..++|+|++++++|.+|..|.+. .-.||++||||+++++|++..+ +..-..+++||||..|||.+.-++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhc
Confidence 9999999999999999999998431 1249999999999999987433 334467899999999999999999
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC----CCCccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
++||+-||+.|.+|+||+|||||.-++++.+||.++|.+|++.|.++. .+++++|+++||..|..||||+|+.+|+
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999998654 4779999999999999999999999999
Q ss_pred HHHHHHHHhC---------------CCccCHHHHHHHHHHHHcCccCcc--cc-------ccccchhhHHHHHHHHHHHh
Q 007989 446 EAAILAGRRG---------------KAAISSKEIDDSIDRIVAGMEGTV--MT-------DGKSKSLVAYHEVGHAICGT 501 (582)
Q Consensus 446 eA~~~A~r~~---------------~~~It~~dl~~A~~~v~~g~~~~~--~~-------~~~~k~~va~hEaGhalv~~ 501 (582)
.|...|..+. +-.|+++||..|++.+.+...... .. -..-.......+-|.-+|..
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~q 529 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQ 529 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHH
Confidence 9999887652 246889999999998776432211 00 01223455666777777766
Q ss_pred hc
Q 007989 502 LT 503 (582)
Q Consensus 502 ~~ 503 (582)
.-
T Consensus 530 vk 531 (744)
T KOG0741|consen 530 VK 531 (744)
T ss_pred hh
Confidence 43
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-32 Score=315.33 Aligned_cols=248 Identities=49% Similarity=0.769 Sum_probs=225.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.+.++|+||+|++++++.+++.+.. +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
+.|.....++.+|+.+....|+||||||||.+..+++... .......+++|+..|+++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988775421 2233567889999999988888899999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC--------
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~-------- 455 (582)
++++|+|||++.+.+++|+.++|.+|++.+.+...+..+.+++.++..+.||+++|+..+|++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988888999999999999999999999999999887652
Q ss_pred -----------CCccCHHHHHHHHHHHHcCc
Q 007989 456 -----------KAAISSKEIDDSIDRIVAGM 475 (582)
Q Consensus 456 -----------~~~It~~dl~~A~~~v~~g~ 475 (582)
...++.+|+..|+..+.+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 13578899999998776544
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=313.70 Aligned_cols=252 Identities=35% Similarity=0.603 Sum_probs=223.0
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeec
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~ 297 (582)
....+.|++|+|.+.++++|+|.|.. |.+|+.|..+++.+|+|+|++||||||||+.|+|+|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34578999999999999999998877 999999999999999999999999999999999999877 568888889
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
++..++|+|+.++.++.+|++|++..|+|||+||||-+.+.|+.. .......++..||..|||+...+.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999998888542 12334567888999999999999999999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
+|+.+||+|+||||||+.+++++|+.+.|.+|+..|.++.... ....+..+|..+.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998765522 233468899999999999999999999999988742
Q ss_pred ----------------CccCHHHHHHHHHHHHcCccCc
Q 007989 457 ----------------AAISSKEIDDSIDRIVAGMEGT 478 (582)
Q Consensus 457 ----------------~~It~~dl~~A~~~v~~g~~~~ 478 (582)
..|...||-.|+.++.+...+.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 3466778888888877766554
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-31 Score=279.84 Aligned_cols=244 Identities=35% Similarity=0.556 Sum_probs=208.7
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..+.+.|+|++|++.+|+.+.+.+.+ +..|+.|..+ ..+++|+||.||||||||+|++|+|.|.+..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34578999999999999999999988 5558887754 345689999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecCccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~--~~~viVIaaTN~~~ 380 (582)
+|+|++++.++.+|..|+...|+|+||||+|.+..+|.. ..++.......++|.++++... +.+|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999999843 3455566777888888887654 45799999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC-CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC---
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--- 456 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~--- 456 (582)
.+|.+++| ||.++++|++||.+.|..+|+..+.+.+ ...+.+++.+++.|+|||+.||.++|.+|++--.+...
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999987773 33567899999999999999999999999876655433
Q ss_pred ----------CccCHHHHHHHHHHHHc
Q 007989 457 ----------AAISSKEIDDSIDRIVA 473 (582)
Q Consensus 457 ----------~~It~~dl~~A~~~v~~ 473 (582)
+.|+..|++.++..+.+
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhcc
Confidence 23445566666655443
No 38
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.94 E-value=1.5e-27 Score=236.34 Aligned_cols=123 Identities=44% Similarity=0.704 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHcCccCc-cccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHH
Q 007989 460 SSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQ 538 (582)
Q Consensus 460 t~~dl~~A~~~v~~g~~~~-~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~ 538 (582)
|++||++|+++++.|.+++ ...++++++++|+||+||||+++++++.+++.+|||+|||.++||+++.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 6899999999999999885 456788999999999999999999999899999999999999999999999888889999
Q ss_pred HHHHHHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 539 QLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 539 ~l~~~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
+++++|+++|||||||+++||++++|+||++||++||+||++||
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv 124 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMV 124 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999999996
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=3.2e-22 Score=206.80 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=162.7
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc---eEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeechh
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pk---gvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s~ 299 (582)
+++++|++++|+++.+++.++..++.+...|...|. ++||+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 458999999999999999987777777788876653 58999999999999999998875 24799999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
+...++|..+..++.+|+.+.. +||||||+|.+...++. ++.....+..|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 9999999888888888888743 69999999999653321 223455667777777643 3568888887643
Q ss_pred c-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCcccc---HHHHHH----hCCCCcHHHHHHHHH
Q 007989 380 D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVS---LDVIAM----RTPGFSGADLANLLN 445 (582)
Q Consensus 380 ~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvd---l~~lA~----~t~G~sgadL~~lv~ 445 (582)
. .++|+|.+ ||+..|+|+.++.+++.+|++.++.+.. +.++.. .+.+.+ .+.| ++++++++++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~G-NaR~vrn~ve 248 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFA-NARSVRNALD 248 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence 2 34699999 9999999999999999999999987544 333322 222222 2334 6999999999
Q ss_pred HHHHHHHHh
Q 007989 446 EAAILAGRR 454 (582)
Q Consensus 446 eA~~~A~r~ 454 (582)
.|...-..+
T Consensus 249 ~~~~~~~~r 257 (287)
T CHL00181 249 RARMRQANR 257 (287)
T ss_pred HHHHHHHHH
Confidence 887665443
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=3e-22 Score=206.87 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=166.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCC---CceEEEEcCCCCcHHHHHHHHHHhcC-------CCEEEeechhH
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEF 300 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~---pkgvLL~GPpGTGKT~LArAlA~e~~-------~pfi~is~s~~ 300 (582)
++++|++++|+++.+++.++..++.+.+.|... ..+++|+||||||||++|+++|..+. .+|++++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 369999999999999999988888888888875 34899999999999999999988762 37999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc-
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA- 379 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~- 379 (582)
...+.|..+..++++|+++.. ++|||||+|.+.+.+.. .+.....++.|+..|+. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHH
Confidence 999999888888899988744 69999999998543221 23344566777777764 23578888887643
Q ss_pred -c---cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHH--------hCCCCcHHHHHHHHH
Q 007989 380 -D---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAM--------RTPGFSGADLANLLN 445 (582)
Q Consensus 380 -~---~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~--------~t~G~sgadL~~lv~ 445 (582)
+ .++|+|.+ ||+..|+|+.++.+++.+|++.++++.. +.++. ...+.. .|+| |+++++|+++
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~G-N~R~lrn~ve 247 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFA-NARSIRNAID 247 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCC-hHHHHHHHHH
Confidence 3 24899999 9999999999999999999999987653 33322 233322 5788 9999999999
Q ss_pred HHHHHHHHh
Q 007989 446 EAAILAGRR 454 (582)
Q Consensus 446 eA~~~A~r~ 454 (582)
.|......+
T Consensus 248 ~~~~~~~~r 256 (284)
T TIGR02880 248 RARLRQANR 256 (284)
T ss_pred HHHHHHHHH
Confidence 997766543
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=1.4e-21 Score=199.33 Aligned_cols=211 Identities=20% Similarity=0.323 Sum_probs=161.0
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCC---ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeech
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~p---kgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s 298 (582)
.+++++|++++|+++++++.+..........|.+.+ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 478999999999999999998766555556676643 478999999999999999999864 3488999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++...++|.....++++|+.+. ++||||||+|.+.+. +..+.....++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998874 469999999999531 11223345678888888754 345666666543
Q ss_pred cc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCC--CccccHHHHH----------HhCCCCcHHHHH
Q 007989 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVSLDVIA----------MRTPGFSGADLA 441 (582)
Q Consensus 379 ~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l--~~dvdl~~lA----------~~t~G~sgadL~ 441 (582)
.+ .++|++.+ ||+..+.++.++.+++.+|++.++..... +++. +..++ ....| +++.+.
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~g-n~R~~~ 228 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFS-NARYVR 228 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCc-hHHHHH
Confidence 22 46889999 99989999999999999999998875543 3332 33332 12345 899999
Q ss_pred HHHHHHHHHHHHh
Q 007989 442 NLLNEAAILAGRR 454 (582)
Q Consensus 442 ~lv~eA~~~A~r~ 454 (582)
|+++.|......+
T Consensus 229 n~~e~a~~~~~~r 241 (261)
T TIGR02881 229 NIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987666443
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=9e-22 Score=177.61 Aligned_cols=130 Identities=45% Similarity=0.774 Sum_probs=116.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCC-CeEEEEeCCCcccccCCCCCCC
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 345 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~ 345 (582)
|||+||||||||++|+.+|..++.+++.+++.++.+.+.+...+.++++|++++... ||||||||+|.+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999987761 23
Q ss_pred CChHHHHHHHHHHhhhcCccCC-CCeEEEEecCccccccccccCCCCccceeeccC
Q 007989 346 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 346 ~~~e~~~~L~~LL~~ld~~~~~-~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~ 400 (582)
........+++|+..++..... .+++||++||.++.++++++| +||++.+++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4666778899999999887665 569999999999999999998 89999998864
No 43
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-21 Score=205.79 Aligned_cols=208 Identities=24% Similarity=0.340 Sum_probs=162.5
Q ss_pred CCcccccccchHHHHHHHH-HHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 227 GVTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e-~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
+-+|+.++=-.+.|+++.+ +.+|++..+-|.+.|...-||.|||||||||||+++.|+|++++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 3689999999999999887 556688999999999999999999999999999999999999999999888766332
Q ss_pred hhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCC---CCC-hHHHHHHHHHHhhhcCccCCC--CeEEEEecCcc
Q 007989 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG---GGN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRA 379 (582)
Q Consensus 306 G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~---~~~-~e~~~~L~~LL~~ld~~~~~~--~viVIaaTN~~ 379 (582)
.. .++.++..+... +||+|++||+-..-+..... ..+ ....-++..||+.+||+-+.. .-|||.|||.+
T Consensus 274 --n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 377777766444 69999999997543332111 111 123468999999999997766 68999999999
Q ss_pred ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC-CCccccHHHHHHhCCCCcHHHHHHH
Q 007989 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANL 443 (582)
Q Consensus 380 ~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~lA~~t~G~sgadL~~l 443 (582)
+.|||||+||||.|.+|++...+..+-+.+++.++.... ..--.+++.+...+. .|+||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 999999999999999999999999999999999986532 111111333333333 599998653
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5e-21 Score=198.86 Aligned_cols=232 Identities=22% Similarity=0.350 Sum_probs=174.1
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
..-.|++|+-....+..++.+...-.+.+. ...+=+++|+|||||||||++|+-+|...|..+-.+.+.+.... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 344699999999999999988877555443 22234589999999999999999999999999999888876542 2
Q ss_pred hhhhhHHHHHHHHHhhCC-CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc
Q 007989 306 GVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 306 G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~ 384 (582)
..+...+..+|+.+++.. .-+|||||.|++..+|.. ...++.....||.||-.-- ....+++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 234567889999997754 458999999999877754 2234556678999886542 23457999999999999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCC------------------------Cc---cccHHHHHHhCCCCcH
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF------------------------DA---DVSLDVIAMRTPGFSG 437 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l------------------------~~---dvdl~~lA~~t~G~sg 437 (582)
++-. |||.+|+|++|..++|..++..|+.++-. .. +.-+.+.|+.|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9988 99999999999999999999887744311 11 1125678999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
++|..++---...+.-+..-.++..-|++.+
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v 609 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERV 609 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 9999998754433333333444554554444
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=2.8e-19 Score=188.27 Aligned_cols=220 Identities=25% Similarity=0.329 Sum_probs=165.9
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.+.++.+|+|++|+++.++.+...+...+.+ ..++.++||+||||||||++|+++|++++.++...++..+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 3455679999999999999999888764332 234668999999999999999999999999988877654321
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh------cC-cc------CCCC
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FE------GNTG 369 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l------d~-~~------~~~~ 369 (582)
...+..++... ..+++|||||||.+. ...++.+..+++.. +. .. .-.+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12344444433 346799999999982 22333343333321 00 00 1134
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
+.+|++||++..++++|++ ||...+.+++|+.+++.+|++..+...... ++..+..++..+.| +++.+.++++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 7899999999999999988 998899999999999999999887655433 22337889999998 8899999999988
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~~v 471 (582)
..|..++...|+.+++..+++.+
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHh
Confidence 88877777889999999998764
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=6.6e-19 Score=173.53 Aligned_cols=195 Identities=28% Similarity=0.373 Sum_probs=132.0
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
-++.+|+|++|+++.+..+.-+++..+... ....++|||||||+|||+||+.+|++.+++|..+++..+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 456799999999999999888777654321 12337999999999999999999999999999998854321
Q ss_pred hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc-----CccCC--------CCeE
Q 007989 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GFEGN--------TGII 371 (582)
Q Consensus 305 vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld-----~~~~~--------~~vi 371 (582)
...+..++...+. ..||||||||.+ +...++.|...++.-. |-..+ +.+.
T Consensus 89 ----~~dl~~il~~l~~--~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ----AGDLAAILTNLKE--GDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----CHHHHHHHHT--T--T-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----HHHHHHHHHhcCC--CcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 2234444444433 469999999999 4555556555554211 11111 2589
Q ss_pred EEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 372 VIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 372 VIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
+|+||++...|.+.|+. ||.-...+..++.++..+|++.......+.-+ ....++|.++.| +++-..++++.+.
T Consensus 152 ligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 99999999999999999 99988899999999999999988776665533 236789999999 9998888877653
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=8e-19 Score=182.38 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=157.6
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhh
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 308 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~ 308 (582)
+|+|++|++++++.|...+...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6999999999999998888653322 134567999999999999999999999999887776543221
Q ss_pred hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc-------Cc------cCCCCeEEEEe
Q 007989 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-------GF------EGNTGIIVIAA 375 (582)
Q Consensus 309 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld-------~~------~~~~~viVIaa 375 (582)
...+...+... ..+.+|||||+|.+. ...+..+..+++... +. ....++++|++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~-----------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhC-----------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11233333332 346799999999983 223333333332211 00 01234889999
Q ss_pred cCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 376 TN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..++.++..+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999998 998889999999999999999877644332 22336789999998 7899999999988888777
Q ss_pred CCCccCHHHHHHHHHH
Q 007989 455 GKAAISSKEIDDSIDR 470 (582)
Q Consensus 455 ~~~~It~~dl~~A~~~ 470 (582)
+...|+.+++.++++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 7788999999999987
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.8e-19 Score=192.16 Aligned_cols=261 Identities=21% Similarity=0.241 Sum_probs=195.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHHHHhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~~~~vG 306 (582)
.|++-...+|++.-+ ....| ...+.++||+||+|+|||.|+++++.++ .+.+.+++|+.+...-+.
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 566666666665444 22222 2334579999999999999999999987 356778999998877777
Q ss_pred hhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh-cCc-cCCCCeEEEEecCccccccc
Q 007989 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGF-EGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 307 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l-d~~-~~~~~viVIaaTN~~~~LD~ 384 (582)
...+.++.+|.++.+++|+||++|++|.+.+..+. .++......+.++.++.++ +.+ ..+..+.|||+.+....++|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 78888999999999999999999999999772222 2233334445555555433 222 33456799999999999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh----CCCcc
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----GKAAI 459 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~----~~~~I 459 (582)
-|.+|++|+-++.++.|+..+|.+||+..+.+.... ..-|++.++..|+||...||..++.+|...|..+ +.+.+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999988776532 2234556999999999999999999999888732 33488
Q ss_pred CHHHHHHHHHHHHcCccCccccc----cccchhhHHHHHHHHHHHhh
Q 007989 460 SSKEIDDSIDRIVAGMEGTVMTD----GKSKSLVAYHEVGHAICGTL 502 (582)
Q Consensus 460 t~~dl~~A~~~v~~g~~~~~~~~----~~~k~~va~hEaGhalv~~~ 502 (582)
|.++|.+++....+-.-+..... ..-..+-.+||+-.++...+
T Consensus 637 tke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVI 683 (952)
T ss_pred hHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHH
Confidence 99999999998776544432221 12234557888888776543
No 49
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=193.53 Aligned_cols=220 Identities=44% Similarity=0.727 Sum_probs=198.4
Q ss_pred hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEE
Q 007989 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 250 l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
+..++.+..++..+|++++++||||||||++++++|.+ +..++.+++.+....+.|....+.+.+|+.+...+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 66668899999999999999999999999999999999999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHH
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I 409 (582)
||+|.+.+.+.. .........+.+++..++++.... +++++.||++..+|+++++|+||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988866 233345678889999999888444 8999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHHcC
Q 007989 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------KAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 410 l~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~------~~~It~~dl~~A~~~v~~g 474 (582)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999988888888999999999999999999999999999998885 4568899999999987653
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.4e-18 Score=187.01 Aligned_cols=208 Identities=25% Similarity=0.439 Sum_probs=174.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccC
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 339 (582)
+...--.+||+|+||||||++++++|.++|.+++.++|.++...-.+..+..+...|..|+...|+|||+-++|.++..+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34444579999999999999999999999999999999999998888888899999999999999999999999998544
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC
Q 007989 340 GTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (582)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~~ld~~~-~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~ 418 (582)
.. +..-...+.++.++. .|.+. ...+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.++....
T Consensus 507 dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 507 DG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred CC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 32 223344455666555 44444 45689999999999999999998 7777899999999999999999999999
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh---C-----------------CCccCHHHHHHHHHHHHc
Q 007989 419 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR---G-----------------KAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 419 l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~---~-----------------~~~It~~dl~~A~~~v~~ 473 (582)
+..++.+..++.+|+||+.+||..++..+-..+..+ . ...++++||.+|+++...
T Consensus 581 ~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~ 655 (953)
T KOG0736|consen 581 LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK 655 (953)
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHH
Confidence 999999999999999999999999988773333211 1 157899999999997653
No 51
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.79 E-value=2.8e-18 Score=191.48 Aligned_cols=219 Identities=21% Similarity=0.292 Sum_probs=153.0
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------C
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------G 289 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~ 289 (582)
.+.++.++.+|+|++|++++++.++..+. ...+.++||+||||||||++|+++..++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 34566788999999999999988875431 1234589999999999999999997642 4
Q ss_pred CCEEEeechh-------HHHHhhhhhh----------------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCC
Q 007989 290 VPFFSISGSE-------FVEMFVGVGA----------------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 346 (582)
Q Consensus 290 ~pfi~is~s~-------~~~~~vG~~~----------------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~ 346 (582)
.||+.++|.. +.+...+... .....++..+ ...+|||||||.+
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L----------- 187 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL----------- 187 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC-----------
Confidence 6899999863 1111111100 0001123333 2369999999999
Q ss_pred ChHHHHHHHHHHhhhcC---------c--------------cCCCCeEEE-EecCccccccccccCCCCccceeeccCCC
Q 007989 347 NDEREQTLNQLLTEMDG---------F--------------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 347 ~~e~~~~L~~LL~~ld~---------~--------------~~~~~viVI-aaTN~~~~LD~aLlrpgRFdr~I~i~~Pd 402 (582)
+...+..|..++++-.- . ....++.+| +|||.|+.+++++++ |+. .+.+++++
T Consensus 188 ~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~ 264 (531)
T TIGR02902 188 HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLL 264 (531)
T ss_pred CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCC
Confidence 44455555555543100 0 011234555 555779999999999 885 78888889
Q ss_pred HHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 403 IRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 403 ~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
.+++.+|++..+++..+. ++..++.++..+. +++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 265 ~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999999988766543 2223566666543 8999999999999999888888999999999975
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.9e-19 Score=178.43 Aligned_cols=237 Identities=22% Similarity=0.268 Sum_probs=173.9
Q ss_pred ccccccchHHHHHHHHHHHH-hcCchhhhhh-cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeech
Q 007989 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~-g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s 298 (582)
|+.++=-...|++|...+.. +.-.++-..- =+..-|-+||+||||||||+|+||+|..+ ...++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55666667788888876644 3222211111 01223569999999999999999999976 3468899999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhC---CCe--EEEEeCCCcccccCCCC-CCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKEN---APC--IVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~---~P~--ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
.+.++|++++-+.+..+|++.... ..+ .++|||+++++..|.+. .+..+...-+++|.+|+++|.+....+|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999887542 222 45699999999888443 333455677899999999999999999999
Q ss_pred EEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-------------CCCc-----cccHHHHHH-hCC
Q 007989 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------------KFDA-----DVSLDVIAM-RTP 433 (582)
Q Consensus 373 IaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-------------~l~~-----dvdl~~lA~-~t~ 433 (582)
++|+|..+.||.|+.. |-|-+.++.+|+...|.+|++..+.+. .+.. +.....+.. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 999999999999999999998765321 0101 111222222 258
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 434 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
|.||+-|+.+=--|...- -....|+.++|..|+-.
T Consensus 379 gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 999999888765554332 22357888888777643
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=1.7e-18 Score=200.16 Aligned_cols=224 Identities=22% Similarity=0.348 Sum_probs=164.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+-++++++|.++..+.+.+++..- ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 4568999999999888766655322 23479999999999999999999987 6789999
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
+++.+. ..|.|+.+++++.+|+.+.+..|+||||||+|.+.+.+... ++....... |...+. +..+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~~~~~---L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMDASNL---LKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHHHHHH---HHHHHh----CCCeEEE
Confidence 998888 46889999999999999988889999999999997654321 122222233 333332 4679999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC----CC-CccccHHHHHHhCCCC-----cHH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KF-DADVSLDVIAMRTPGF-----SGA 438 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~----~l-~~dvdl~~lA~~t~G~-----sga 438 (582)
++||..+ ..|++|.| ||+ .|+++.|+.+++.+|++...... .. -.+..+..++..+..| -+.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999754 47999999 997 79999999999999999655431 11 1233355566555443 244
Q ss_pred HHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHc
Q 007989 439 DLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~----~~~~It~~dl~~A~~~v~~ 473 (582)
-.-.++++|+.....+ .+..|+.+|+.+++.+...
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 4457777777544322 2356999999999988653
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=7.1e-18 Score=176.48 Aligned_cols=204 Identities=29% Similarity=0.431 Sum_probs=146.2
Q ss_pred CCCcccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 226 TGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~---L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
++.+++|++|++...-+ |+..++. ....+++||||||||||+||+.||+..+.+|..+|+
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA----- 81 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA----- 81 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc-----
Confidence 46799999999987643 3333331 112379999999999999999999999999999997
Q ss_pred HhhhhhhhHHHHHHHHHhhCC----CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec--
Q 007989 303 MFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-- 376 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT-- 376 (582)
+..+.+.+|.+|+.|++.. ..||||||||.+ +...| ..||-.++ +..+++|+||
T Consensus 82 --v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQ---D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 82 --VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQ---DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred --ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhh---hhhhhhhc----CCeEEEEeccCC
Confidence 4456678999999995532 479999999999 22233 34555554 5678999887
Q ss_pred CccccccccccCCCCccceeeccCCCHHHHHHHHHHHc--CCCCCC------ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG--SNKKFD------ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 377 N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l--~~~~l~------~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
|+.-.+.+||++ |. +++++.+.+.++..++++.-+ ....+. ++...+.++..+.| ..+-.-|+++.+.
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~~ 217 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLLELAA 217 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHHHHHH
Confidence 666689999999 77 478999999999999988733 222222 23346788888888 5555555555555
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
..+ +.+. .++.+++++.+.+..
T Consensus 218 ~~~-~~~~-~~~~~~l~~~l~~~~ 239 (436)
T COG2256 218 LSA-EPDE-VLILELLEEILQRRS 239 (436)
T ss_pred Hhc-CCCc-ccCHHHHHHHHhhhh
Confidence 544 2232 344777777776543
No 55
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=7.3e-18 Score=182.48 Aligned_cols=241 Identities=19% Similarity=0.330 Sum_probs=162.8
Q ss_pred CCCcccc-cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechh
Q 007989 226 TGVTFDD-VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (582)
Q Consensus 226 ~~~~f~d-I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~ 299 (582)
+..+|++ ++|.+.. .....+......|. ....+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4678999 5564432 12222222222221 223479999999999999999999876 67899999999
Q ss_pred HHHHhhhhhhh-HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
|...+...... ....+.+..+ .+.+|+|||+|.+.++. ..+..+..++..+. .+...+||+++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~---~~~~~iiits~~~ 242 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALH---ENGKQIVLTSDRP 242 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHH---HCCCCEEEecCCC
Confidence 88765443221 1222222222 35799999999984321 22333334443332 2334566666666
Q ss_pred ccc---ccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 379 ~~~---LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
|+. +++.+.+ ||.. .+.+++||.++|.+|++..+....+. ++..++.+|.+..+ +.++|+.+++.....|.
T Consensus 243 p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 243 PKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 654 5688888 8875 79999999999999999988665443 33447889999998 99999999999988886
Q ss_pred HhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhh
Q 007989 453 RRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTL 502 (582)
Q Consensus 453 r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~ 502 (582)
..+ ..||.+.+++++...... .++.+..+++-++++..+
T Consensus 320 ~~~-~~it~~~~~~~L~~~~~~----------~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 320 LTG-KPITLELAKEALKDLLRA----------KKKEITIENIQEVVAKYY 358 (405)
T ss_pred HhC-CCCCHHHHHHHHHHhccc----------cCCCCCHHHHHHHHHHHc
Confidence 655 569999999988765322 123467788888887664
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=3.2e-18 Score=187.71 Aligned_cols=296 Identities=18% Similarity=0.320 Sum_probs=189.0
Q ss_pred CCCCcccccc-cchH--HHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEee
Q 007989 225 NTGVTFDDVA-GVDE--AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS 296 (582)
Q Consensus 225 ~~~~~f~dI~-G~d~--~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is 296 (582)
.+..+|++.+ |... +...++++. .+|. ....+++||||||||||+|+++++.++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~---~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVA---ENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHH---hCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899955 4322 333333332 2321 123469999999999999999999987 56799999
Q ss_pred chhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 297 ~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
+.+|...+.........+.|..... .+++|+|||+|.+..+ +..++.+..++..+ ..+...+||+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l---~~~~~~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK---------ERTQEEFFHTFNAL---HEAGKQIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC---------HHHHHHHHHHHHHH---HHCCCcEEEECC
Confidence 9999877654432222223333222 4679999999998432 12233333333332 223345677666
Q ss_pred Ccccc---ccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 007989 377 NRADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAI 449 (582)
Q Consensus 377 N~~~~---LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~ 449 (582)
..|.. +++.|.+ ||.. .+.+++||.++|.+|++..+...+ ++++ .++.||....| +.++|..+++....
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e-~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE-VLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 66655 6788888 9975 799999999999999999886543 4444 48899999998 99999999999988
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcc----eEEE
Q 007989 450 LAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR----GLTW 525 (582)
Q Consensus 450 ~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~----g~~~ 525 (582)
.|...+ ..||.+.+++++..+.... ++.+...++-++|+..+--. ...+.-..|.+.. -..+
T Consensus 329 ~~~~~~-~~it~~~~~~~l~~~~~~~----------~~~~~~~~i~~~v~~~~~i~---~~~l~~~~R~~~~~~aR~iam 394 (450)
T PRK00149 329 YASLTG-KPITLELAKEALKDLLAAQ----------KKKITIENIQKVVAEYYNIK---VSDLKSKSRTRNIARPRQIAM 394 (450)
T ss_pred HHHhhC-CCCCHHHHHHHHHHhhccC----------CCCCCHHHHHHHHHHHcCCC---HHHHhCCCCCcccChHHHHHH
Confidence 886665 4599999999998764211 12355666777776654321 1111111111111 1122
Q ss_pred eccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcccC
Q 007989 526 FIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTG 566 (582)
Q Consensus 526 ~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~g 566 (582)
|+-.+ ++... +.+|...+|||-+-.++.+...+..-
T Consensus 395 yl~~~----~~~~s-~~~Ig~~fg~rdhstV~~a~~~i~~~ 430 (450)
T PRK00149 395 YLAKE----LTDLS-LPEIGRAFGGRDHTTVLHAVRKIEKL 430 (450)
T ss_pred HHHHH----hcCCC-HHHHHHHcCCCCHhHHHHHHHHHHHH
Confidence 22111 11112 47899999999999998876554443
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.6e-17 Score=166.91 Aligned_cols=219 Identities=26% Similarity=0.351 Sum_probs=170.2
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
++.+|+|.+|++++|+.|.-++..-+..+ ...-++||+||||.|||+||..+|+|+|+.+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 46789999999999999998887654432 23458999999999999999999999999999888865432
Q ss_pred hhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh--c-----CccC------CCCeEE
Q 007989 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--D-----GFEG------NTGIIV 372 (582)
Q Consensus 306 G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l--d-----~~~~------~~~viV 372 (582)
+..+-.++.....+ +||||||||++. ...++++.--++.. | |... -+.+.+
T Consensus 91 ---~gDlaaiLt~Le~~--DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 ---PGDLAAILTNLEEG--DVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ---hhhHHHHHhcCCcC--CeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 23344445444433 699999999993 33444544443321 1 1111 125889
Q ss_pred EEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 373 IaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
|+||.+...|...|+. ||.....+..++.++..+|++.......+.- +....++|+++.| +++=...++++..-.|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999998876655542 2336789999999 9999999999999999
Q ss_pred HHhCCCccCHHHHHHHHHHHHc
Q 007989 452 GRRGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 452 ~r~~~~~It~~dl~~A~~~v~~ 473 (582)
.-++...|+.+-..+|+.....
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCc
Confidence 9899999999988888876543
No 58
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.76 E-value=1.2e-17 Score=194.20 Aligned_cols=201 Identities=27% Similarity=0.351 Sum_probs=139.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH---------
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~--------- 301 (582)
+|+.|++++|+.+.+.+...... +...+..+||+||||||||++|+++|++++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 46899999999999876643211 111223799999999999999999999999999999876432
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC-----cc--------CCC
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~-----~~--------~~~ 368 (582)
..|+|....++...|..+....| ||||||||.+.+.... + ..+.|+..+|. |. ...
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-----~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-----D-----PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-----C-----HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24567777788888888876666 7889999999743211 1 12344444432 11 124
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC-----CCCCC------ccccHHHHHH-hCCCCc
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-----NKKFD------ADVSLDVIAM-RTPGFS 436 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~-----~~~l~------~dvdl~~lA~-~t~G~s 436 (582)
++++|+|||.++.++++|++ ||+ .|+++.|+.+++.+|++.++. ...+. .+..+..+++ .+..+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 78999999999999999999 996 789999999999999988752 12221 1122444444 333445
Q ss_pred HHHHHHHHHHHHHHH
Q 007989 437 GADLANLLNEAAILA 451 (582)
Q Consensus 437 gadL~~lv~eA~~~A 451 (582)
.++|+..+...+..+
T Consensus 540 ~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 540 VRNLERQIEKICRKA 554 (775)
T ss_pred ChHHHHHHHHHHHHH
Confidence 566665555444333
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=6.8e-18 Score=194.09 Aligned_cols=225 Identities=22% Similarity=0.324 Sum_probs=162.8
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
..-.++.++|.++..+++.+++..- .+.++||+||||||||++|+++|... ++.++.+
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 3456889999999999888877642 13378999999999999999999864 4556666
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
+.+.+. ..|.|..+.+++.+|+.+....++||||||||.+.+.+.. .++..+....+..++. +..+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeEEE
Confidence 666655 3577888899999999998888899999999999765432 1122233333333332 5679999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcccc-----HHHHHHh-----CCCCcHH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-----LDVIAMR-----TPGFSGA 438 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd-----l~~lA~~-----t~G~sga 438 (582)
++||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++. +...+.. ...+-+.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9999876 47999999 996 799999999999999997655443332222 2222222 2335566
Q ss_pred HHHHHHHHHHHHHH----HhCCCccCHHHHHHHHHHHHcC
Q 007989 439 DLANLLNEAAILAG----RRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 439 dL~~lv~eA~~~A~----r~~~~~It~~dl~~A~~~v~~g 474 (582)
....++++|+.... ...+..|+.+|+.+.+.+...-
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARI 436 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCC
Confidence 88899999986442 2234568999999998876543
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.5e-17 Score=179.18 Aligned_cols=213 Identities=19% Similarity=0.251 Sum_probs=154.7
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------E
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 293 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------i 293 (582)
+.+++++.+|+||+|++.+.+.|...+.. .+.++.+||+||||||||++|+++|+.+++.- .
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 45677889999999999999988887752 23456799999999999999999999987631 0
Q ss_pred E-eechhHHHH----h------hhhhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 294 S-ISGSEFVEM----F------VGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 294 ~-is~s~~~~~----~------vG~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
. -+|.++... + ...+...+|++.+.+. .....|+||||+|.+. ...+|.||
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALL 142 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALL 142 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHH
Confidence 0 011111110 0 1122345666655543 2345699999999992 24678888
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..++. +...+++|.+|+.++.|.+++++ |+. ++.+..++.++-.+.++..+....+. ++..+..|++...| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 88874 44678999999999999999999 885 68888888888888888877654443 33458889999999 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+|..+++..+...+ ...|+.+++.+.+
T Consensus 217 RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 217 RDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 99999999876542 2358887776554
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.6e-17 Score=178.18 Aligned_cols=206 Identities=17% Similarity=0.293 Sum_probs=149.4
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~----------- 290 (582)
.++.++.+|+|++|++.+++.|+..+.. .+.|.++||+||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3566788999999999998888776652 235668999999999999999999998865
Q ss_pred -------------CEEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 291 -------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
.++.++++. ..+...+|.+.+.+.. ....||||||+|.+. ...
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEA 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHH
Confidence 244443321 1223445665555432 234699999999982 234
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHh
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMR 431 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~ 431 (582)
++.|+..++.. ...+++|++|+.++.+++++.+ |+. .+.+.+|+.++...+++..+.... +++ ..++.|+..
T Consensus 134 ~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~-eal~~Ia~~ 207 (472)
T PRK14962 134 FNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDR-EALSFIAKR 207 (472)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Confidence 56777777642 3467777777778899999999 885 899999999999999888765433 333 347888988
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
+.| +.+++.+.+..+...+ + ..||.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 887 7888878777655432 2 2499999988764
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=9.8e-17 Score=180.67 Aligned_cols=210 Identities=17% Similarity=0.238 Sum_probs=151.9
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE--Ee---
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--SI--- 295 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi--~i--- 295 (582)
..+++++.+|+||+|++.+++.|.+.++ +.++++.+||+||+|||||++|+++|+.+++.-- ..
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 3456788899999999999999888775 2345678899999999999999999998875210 00
Q ss_pred ---echhHHHH----h------hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 296 ---SGSEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 296 ---s~s~~~~~----~------vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
+|..+.+. + ...+...++++++.+.. ....|+||||+|.|. ....|.||
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALL 140 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAML 140 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHH
Confidence 11111110 0 01233457777776542 234699999999992 23567788
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+....+. ++..+..|++...| +.
T Consensus 141 KtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 87774 34578899999999999999999 88 488999999999988888877654443 33447889999999 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
++..+++.++..+. ...|+.+++.
T Consensus 215 RdALsLLdQAia~~----~~~It~~~V~ 238 (830)
T PRK07003 215 RDALSLTDQAIAYS----ANEVTETAVS 238 (830)
T ss_pred HHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 99999988887543 2345555444
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-16 Score=169.79 Aligned_cols=214 Identities=22% Similarity=0.278 Sum_probs=151.9
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 294 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~------ 294 (582)
..+++++.+|+||+|++.+++.+...+.. .+.|+.+||+||||+|||++|+++|++++++.-.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34567788999999999999998877752 2356689999999999999999999988643110
Q ss_pred --eechhHHHH-----h-h----hhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 295 --ISGSEFVEM-----F-V----GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 295 --is~s~~~~~-----~-v----G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
.+|.++... + + ......++++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLL 140 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALL 140 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHH
Confidence 012221110 0 0 0223446666665432 224699999999981 23456777
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..++.. ...+.+|.+|+.++.+.+++.+ |+ ..+++++|+.++..++++..++..+.. ++..++.++..+.| ++
T Consensus 141 k~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777643 3456677777778889999988 77 478999999999999998877654432 33447788988888 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
+++.++++.+... +...|+.+++.+++.
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 9999998887643 456799988887653
No 64
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.1e-16 Score=172.72 Aligned_cols=298 Identities=15% Similarity=0.212 Sum_probs=186.1
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechh
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~ 299 (582)
.+..+|++.+--+.-......+.....+|.. ..+++||||||+|||+|++++++++ +..++++++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4567999987333333233333333333321 3469999999999999999999975 46789999999
Q ss_pred HHHHhhhhhh-hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 300 FVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~-~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
|...+..... ..+. -|.......+.+|+|||++.+..+. ..+..+..++..+. .....+|+++.+.
T Consensus 171 f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~---~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELH---DSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHH---HcCCeEEEECCCC
Confidence 8876644321 1222 2443333467899999999884321 12222333333322 2334566666666
Q ss_pred ccc---ccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCC--CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 379 ~~~---LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
|+. +++.+.+ ||.. .+.+++||.+.|.+|++..+.. ..++++ .++.||....| +.++|+.+++.....+
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 664 5677888 7754 7889999999999999988764 334444 38899999998 9999999999988887
Q ss_pred HHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcce----EEEec
Q 007989 452 GRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARG----LTWFI 527 (582)
Q Consensus 452 ~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g----~~~~~ 527 (582)
...+ ..||.+.+.+++..+.... ..+..+..+++-.+++..+-- ....+.-..|....- ..+|+
T Consensus 314 ~~~~-~~it~~~a~~~L~~~~~~~--------~~~~~i~~~~I~~~V~~~~~i---~~~~l~s~~R~~~i~~aR~iamyl 381 (440)
T PRK14088 314 ETTG-EEVDLKEAILLLKDFIKPN--------RVKAMDPIDELIEIVAKVTGV---SREEILSNSRNVKALLARRIGMYV 381 (440)
T ss_pred HHhC-CCCCHHHHHHHHHHHhccc--------cccCCCCHHHHHHHHHHHcCC---cHHHHhCCCCCccccHHHHHHHHH
Confidence 6666 4599999999987764321 112235667777777765421 122222122221111 11222
Q ss_pred cCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCccc
Q 007989 528 PSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTT 565 (582)
Q Consensus 528 p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~ 565 (582)
-.+ ++... +..|+..+| |-.-.++.+...+..
T Consensus 382 ~r~----~~~~s-~~~Ig~~fg-r~hstV~~a~~~i~~ 413 (440)
T PRK14088 382 AKN----YLGSS-LRTIAEKFN-RSHPVVVDSVKKVKD 413 (440)
T ss_pred HHH----HhCCC-HHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 111 11112 477888886 888888887654443
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.73 E-value=2.6e-16 Score=165.16 Aligned_cols=214 Identities=20% Similarity=0.293 Sum_probs=144.4
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEE
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (582)
.+|.+++.+.+|++++|.+++++.|.+.+.. + . +.++||+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS---P--------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC---C--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 3688888999999999999999988887752 1 1 12699999999999999999999873 4678
Q ss_pred EeechhHHHHh-------------hhh-------hhhHHHHHHHHHhh-----CCCeEEEEeCCCcccccCCCCCCCCCh
Q 007989 294 SISGSEFVEMF-------------VGV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (582)
Q Consensus 294 ~is~s~~~~~~-------------vG~-------~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~ 348 (582)
+++++++.... .+. ....++.+.+.... ..+.+|+|||+|.+ ..
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~ 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------RE 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CH
Confidence 88988765321 111 11223333333322 23469999999988 22
Q ss_pred HHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHH
Q 007989 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDV 427 (582)
Q Consensus 349 e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~ 427 (582)
..++.+..+++ .... ...+|.+++.+..+.+.|.+ |+ ..+.+.+|+.++..++++..+++..+. ++..++.
T Consensus 140 ~~~~~L~~~le---~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 140 DAQQALRRIME---QYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHHHHHHHHHH---hccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 33444444443 3222 23455556566677778877 76 478999999999999998877655443 3445788
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
++..+.| +.+++.+.+..+ +. +...||.+++.+++.
T Consensus 212 l~~~~~g-dlr~l~~~l~~~---~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG-DLRKAILTLQTA---AL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC-CHHHHHHHHHHH---HH--cCCCCCHHHHHHHhC
Confidence 8888876 666665555543 32 234799999887654
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=5.9e-17 Score=180.42 Aligned_cols=210 Identities=17% Similarity=0.218 Sum_probs=151.9
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
..+++++.+|+||+|++.+++.|.+.+.. .++++.+||+||+|||||++|+.+|+.+++.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 34567788999999999999999888863 2456689999999999999999999998761
Q ss_pred ---EEEe-echhHHH----Hh------hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 ---FFSI-SGSEFVE----MF------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 ---fi~i-s~s~~~~----~~------vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
+-.+ +|..+.. .+ ...+...+|++.+.+.. ....|+||||+|.+. ...
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~A 140 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHA 140 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHH
Confidence 1111 1111110 00 01234556777766532 335799999999992 246
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t 432 (582)
.|.||..|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.++..+....+.. +..++.|++..
T Consensus 141 aNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7889988874 44578889999999999999999 88 5889999999998888887765544432 23367889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
.| +.++..+++.++.... ...|+.+++.
T Consensus 216 ~G-s~RdALsLLdQaia~~----~~~It~~~V~ 243 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAYS----AGNVSEEAVR 243 (700)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 98 9999999998876432 2346555443
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=1.3e-16 Score=173.16 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=147.7
Q ss_pred ccCCCCcccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 223 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~---L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
++.++.+|+|++|+++.... +.+.+.. . .+.+++|+||||||||++|+++|...+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~---~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA---G---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc---C---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 44567799999999999766 6666542 1 2337999999999999999999999999999998753
Q ss_pred HHHHhhhhhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 300 FVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
. +.+.++.+++.+. .....+|||||+|.+ +... .+.|+..++ ...+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~---q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQ---QDALLPHVE----DGTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHH---HHHHHHHhh----cCcEEEEEe
Confidence 2 2344566666653 235689999999998 2222 344555444 245677766
Q ss_pred c--CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 376 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-----KFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 376 T--N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-----~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
| |....+++++++ |+ ..+.+++++.++...+++..+... .+. +..++.++..+.| +.+.+.++++.+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 345578999999 88 688999999999999998876432 233 2336778888877 8888888888876
Q ss_pred HHHHHhCCCccCHHHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~~v 471 (582)
.. ...|+.+++.+++...
T Consensus 202 ~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKR 219 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhh
Confidence 54 4568888888877654
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.8e-16 Score=174.99 Aligned_cols=217 Identities=19% Similarity=0.287 Sum_probs=159.4
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE------
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------ 293 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi------ 293 (582)
.+.+++++.+|+|++|++.+++.|...+.. .+.|+++||+||||||||++|+++|+.+++.--
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 345677889999999999999988876652 345678999999999999999999999876311
Q ss_pred ------EeechhHHHH----h------hhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 294 ------SISGSEFVEM----F------VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 294 ------~is~s~~~~~----~------vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
.-+|..+.+. + ...+...++++++.+... ...|++|||+|.+. ...
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a 144 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGA 144 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHH
Confidence 0112222110 0 112345678888777432 34699999999982 245
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
++.|+..++. ....+++|.+|+.++.+.+++.+ |+ ..+++..++.++..++++..++..+.. ++..++.++..+
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778877773 34567888888888899999998 88 478999999999999999888765543 233478899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.| +.+++.++++.+..++... ...||.+++.+.+
T Consensus 220 ~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ll 253 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAKS-DNIISPQVINQML 253 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHH
Confidence 88 9999999999988766322 2368888877654
No 69
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.3e-16 Score=177.96 Aligned_cols=206 Identities=18% Similarity=0.280 Sum_probs=151.9
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (582)
.+++++.+|+||+|++.+++.|...+. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 355678899999999999999888876 23456789999999999999999999998762
Q ss_pred --------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.+ +. ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~---~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------ST---HS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CH---HH
Confidence 22232221 1133456776665532 34579999999998 22 35
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.+.|+..++. ....+.+|.+|+.+..+.+.+++ |+. ++.+..++.++..+.++..+.+..+. ++..+..++..+
T Consensus 135 ~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 135 FNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6677777774 33556777778888888888887 884 88999999999888888877655433 334478899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 88 999999998887643 35568888876643
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=1.6e-16 Score=175.74 Aligned_cols=211 Identities=23% Similarity=0.305 Sum_probs=148.9
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
+|.+++.+.+|+|++|.+++++.+.+.+....+ ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 588899999999999999999999998875442 234679999999999999999999999999999999887
Q ss_pred HHHHhhhhhhhHHHHHHHHHhh------CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 300 FVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
.... ..++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++ ..+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEE
Confidence 5421 122333222221 246799999999984321 1123444555554 2234566
Q ss_pred EecCccccccc-cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 374 AATNRADILDS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 374 aaTN~~~~LD~-aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
.++|.+..+++ .|.+ |+ ..|.|+.|+..+...+++..+...++. ++..++.|+..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 67788877776 5555 44 579999999999999999887554432 23347888887766 6777777666544
Q ss_pred HHhCCCccCHHHHHHH
Q 007989 452 GRRGKAAISSKEIDDS 467 (582)
Q Consensus 452 ~r~~~~~It~~dl~~A 467 (582)
.+...|+.+++...
T Consensus 208 --~~~~~it~~~v~~~ 221 (482)
T PRK04195 208 --EGYGKLTLEDVKTL 221 (482)
T ss_pred --cCCCCCcHHHHHHh
Confidence 34456777766533
No 71
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.72 E-value=4.1e-16 Score=165.89 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=155.0
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEeech
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 298 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s 298 (582)
...++++|.++.+++|...+...... ..|.+++|+||||||||+++++++.++. +++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 34468999999999888887653221 2355799999999999999999987642 578888986
Q ss_pred hHHH----------Hhh--hh--------hhhHHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 299 EFVE----------MFV--GV--------GASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 299 ~~~~----------~~v--G~--------~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
.... .+. +. ..+.+..+++... ...+.||+|||+|.+... .+..+.+|
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhH
Confidence 4321 111 11 0112344444443 345789999999999521 12355666
Q ss_pred HhhhcC-ccCCCCeEEEEecCccc---cccccccCCCCcc-ceeeccCCCHHHHHHHHHHHcCC----CCCCccc--cHH
Q 007989 358 LTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN----KKFDADV--SLD 426 (582)
Q Consensus 358 L~~ld~-~~~~~~viVIaaTN~~~---~LD~aLlrpgRFd-r~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dv--dl~ 426 (582)
+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.. ..+++++ -+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 554221 12235788999998875 57888877 775 57999999999999999988752 1122222 123
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
.++..+.| ..+.+.++|+.|+..|..++...|+.+|+.+|++.+
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34555667 788888999999999999999999999999999876
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.6e-16 Score=176.17 Aligned_cols=207 Identities=16% Similarity=0.245 Sum_probs=151.5
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
..+++++.+|+||+|++.+++.|...+.. .+.|+.+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 45677888999999999999999988863 2456679999999999999999999998763
Q ss_pred ---------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHH
Q 007989 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (582)
Q Consensus 292 ---------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (582)
++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HH
Confidence 33333221 1233456777766532 234699999999992 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHh
Q 007989 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (582)
Q Consensus 353 ~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (582)
..|.||..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++-.+.++..+++.+.. ++..+..++..
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467788887743 3457777777888888888888 77 477888888888777777766554433 33347788988
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 888 999999999888643 34567877776543
No 73
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.9e-17 Score=176.92 Aligned_cols=177 Identities=24% Similarity=0.404 Sum_probs=134.4
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
.+.......+-=+|-.|++++|+++.|++.--+.. |.-..+-++|+||||+|||+++|+||..+|..|+.+|..
T Consensus 399 n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG 472 (906)
T KOG2004|consen 399 NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG 472 (906)
T ss_pred hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence 33443444455678999999999999987652221 222345699999999999999999999999999999975
Q ss_pred hHHH---------HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc----
Q 007989 299 EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---- 365 (582)
Q Consensus 299 ~~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~---- 365 (582)
.+.+ .|+|..+.++-+.++..+-..| +++|||||.+|+... |+ .. ..||+.+|.-.
T Consensus 473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q-----GD--Pa---sALLElLDPEQNanF 541 (906)
T KOG2004|consen 473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ-----GD--PA---SALLELLDPEQNANF 541 (906)
T ss_pred ccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC-----CC--hH---HHHHHhcChhhccch
Confidence 5443 5899999999999999988888 666899999973221 11 11 23444333211
Q ss_pred ---------CCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC
Q 007989 366 ---------GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (582)
Q Consensus 366 ---------~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~ 415 (582)
.-++|++|||.|..+.|+++|+. |+. .|+++-+..++..+|.+.|+-
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 12369999999999999999999 886 899999999999999998873
No 74
>PRK06893 DNA replication initiation factor; Validated
Probab=99.70 E-value=8.2e-16 Score=154.18 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
...+..+|++.+|.+... .+....+.... .....++||||||||||+|++|+|+++ +....+++..+
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345677999999876432 11112111111 111258999999999999999999875 45666666653
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
.... ..+.++... ...+|+|||++.+.. ..+.+..+..+++.+.. .+..++|++++..|
T Consensus 78 ~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~--~~~~illits~~~p 136 (229)
T PRK06893 78 SQYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE--QGKTLLLISADCSP 136 (229)
T ss_pred hhhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCCh
Confidence 2211 112333332 346999999999842 23344456666655431 12234566666667
Q ss_pred cccc---ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 380 DILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 380 ~~LD---~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
+.++ +.|.++.++...+.++.||.++|.+|++.++....+. ++..++.|+.+.+| +.+.+.++++.....+..++
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC
Confidence 7664 7888844455688999999999999999877544332 23337899999998 99999999998754444334
Q ss_pred CCccCHHHHHHHH
Q 007989 456 KAAISSKEIDDSI 468 (582)
Q Consensus 456 ~~~It~~dl~~A~ 468 (582)
..||...+++++
T Consensus 216 -~~it~~~v~~~L 227 (229)
T PRK06893 216 -RKLTIPFVKEIL 227 (229)
T ss_pred -CCCCHHHHHHHh
Confidence 469998888765
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.70 E-value=1.1e-15 Score=151.56 Aligned_cols=204 Identities=16% Similarity=0.207 Sum_probs=138.7
Q ss_pred CCCccccccc--chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 226 TGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 226 ~~~~f~dI~G--~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
...+|++.++ .+.+.+.+++.+. ...+.+++|+||||||||++|++++.++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4567888873 4445665555543 1235589999999999999999998876 578999999887
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
.... .++++... .+.+|+|||+|.+.. ..+.++.+..++..+.. ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCeEEEECCCChH
Confidence 6532 23333322 235899999999831 11224455555554322 22334444444444
Q ss_pred ccc---ccccCCCCc--cceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 007989 381 ILD---SALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (582)
Q Consensus 381 ~LD---~aLlrpgRF--dr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r 453 (582)
.++ +.|.+ |+ ..++.+++|+.+++..+++.++.+.. ++++ .+..++..|+| +.+++.++++++...+..
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRHGSR-DMGSLMALLDALDRASLA 211 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 432 66776 66 46899999999999999988765433 3333 36888889998 999999999998876666
Q ss_pred hCCCccCHHHHHHHH
Q 007989 454 RGKAAISSKEIDDSI 468 (582)
Q Consensus 454 ~~~~~It~~dl~~A~ 468 (582)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 55 469988887664
No 76
>PLN03025 replication factor C subunit; Provisional
Probab=99.70 E-value=5.8e-16 Score=162.60 Aligned_cols=204 Identities=21% Similarity=0.216 Sum_probs=140.0
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEEe
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI 295 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----pfi~i 295 (582)
|.+++++.+|+|++|++++++.|+.++..- ..| ++||+||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 678889999999999999999888776521 122 6999999999999999999999733 35566
Q ss_pred echhHHHHhhhhhhhHHHHHHHHHh-------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 007989 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (582)
Q Consensus 296 s~s~~~~~~vG~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~ 368 (582)
+.++... ...+++..+... ...+.|++|||+|.+ ....++.+ +..++... .
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL---~~~lE~~~--~ 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQAL---RRTMEIYS--N 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHH---HHHHhccc--C
Confidence 6654321 123444333221 123579999999999 23334444 44444332 2
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
...+|.++|.++.+.++|++ |+ ..++++.|+.++....++..+++.++. ++..++.++....| +.+.+.+.++.+
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~ 204 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 204 (319)
T ss_pred CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 34566678888888899998 77 478999999999999888877554432 23347888888877 666666666522
Q ss_pred HHHHHHhCCCccCHHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A 467 (582)
. .+...|+.+++.+.
T Consensus 205 ~-----~~~~~i~~~~v~~~ 219 (319)
T PLN03025 205 H-----SGFGFVNQENVFKV 219 (319)
T ss_pred H-----hcCCCCCHHHHHHH
Confidence 2 13456888777654
No 77
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.9e-16 Score=170.53 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=153.8
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC------------
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~------------ 290 (582)
.++++.+|+||+|++.+++.|.+.+.. .+.|+++||+||||+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 356778999999999999988877652 356779999999999999999999997643
Q ss_pred ------------CEEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHH
Q 007989 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (582)
Q Consensus 291 ------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (582)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 233343321 1234567777777643 234699999999982 2467
Q ss_pred HHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCC
Q 007989 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (582)
Q Consensus 355 ~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~ 433 (582)
|.|+..++. +...+++|.+|+.++.+.+.+++ |+. .+++..++.++..+.++..+.+.+.. ++..++.+++.+.
T Consensus 134 NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888874 34567777788888889999998 874 68999999999888888877654433 3344788999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 434 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
| +.+++.++++.+..++ + ..||.+++.+.
T Consensus 209 G-slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 8 9999999999987655 2 36888888765
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6.7e-16 Score=176.87 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=148.4
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEE
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~ 294 (582)
.+++++.+|+||+|++.+++.|+..+.. .++|+.+||+||||||||++|+++|+.+++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 4567788999999999999998877752 2456678999999999999999999998764 111
Q ss_pred e-echhHHHH-------hh---hhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh
Q 007989 295 I-SGSEFVEM-------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (582)
Q Consensus 295 i-s~s~~~~~-------~v---G~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (582)
+ +|-.+.+. +- ..+...+|++.+.+.. +...|+||||+|.+ ....+|.||.
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L--------------T~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML--------------SRSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc--------------CHHHHHHHHH
Confidence 1 11111110 00 0123446666655532 33469999999999 2346788888
Q ss_pred hhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHH
Q 007989 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (582)
Q Consensus 360 ~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (582)
.|+. ....+++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+....+. .+..+..|+..+.| +.+
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 34567777788888889999998 87 578999999999998888877544332 23347889999998 999
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 439 DLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
++.+++..+... +...++.+++.
T Consensus 216 ~ALnLLdQala~----~~~~It~~~V~ 238 (944)
T PRK14949 216 DALSLTDQAIAF----GGGQVMLTQVQ 238 (944)
T ss_pred HHHHHHHHHHHh----cCCcccHHHHH
Confidence 999999887733 23345555443
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6.1e-16 Score=174.42 Aligned_cols=206 Identities=18% Similarity=0.302 Sum_probs=151.7
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (582)
.++.++.+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 3456778999999999999988887763 2356678999999999999999999998763
Q ss_pred --------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++.+++++ ..+...+|++.+.+.. +...|+||||+|.+. ...
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a 135 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHS 135 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHH
Confidence 12222211 1123456666665532 344699999999992 346
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.|.||..|+. +...+++|.+|+.++.|.+.+++ |+ ..+.|..++.++-.+.++..+....+. ++..+..|+..+
T Consensus 136 ~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7888888874 44567788888888999999999 87 689999999999988888877544433 334477899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.| +.++..+++..|... +...|+.+++.+.+
T Consensus 211 ~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 211 DG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 98 999999999887643 23457776666544
No 80
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=1.4e-15 Score=169.54 Aligned_cols=295 Identities=18% Similarity=0.267 Sum_probs=185.3
Q ss_pred CCCCcccccccchHH---HHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEee
Q 007989 225 NTGVTFDDVAGVDEA---KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS 296 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~---k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is 296 (582)
....+|++.+.-+.- ...+..+++ ++. .....++|||++|||||+|++|+++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 356799998744332 222333332 221 112359999999999999999999976 57889999
Q ss_pred chhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 297 ~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
+.+|.+.+.........+.|.... ..+++|+||||+.+..+ +..+..+..+++.+. .+.+-+||++.
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk~IIITSd 418 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANKQIVLSSD 418 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCCCEEEecC
Confidence 999998776543332233454332 24689999999999432 223334444544442 22334555444
Q ss_pred Cccc---cccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 007989 377 NRAD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (582)
Q Consensus 377 N~~~---~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~ 450 (582)
..|. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....+. ++..++.|+.+..+ +.++|+.+++.....
T Consensus 419 ~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~ 495 (617)
T PRK14086 419 RPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAF 495 (617)
T ss_pred CChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Confidence 4443 56888998 8866 77999999999999999988765544 23347889999887 999999999998877
Q ss_pred HHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcc----eEEEe
Q 007989 451 AGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR----GLTWF 526 (582)
Q Consensus 451 A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~----g~~~~ 526 (582)
|...+ ..||.+.+++++..++... ++..+...++-++|+..+--. +..+.-..|.... -..+|
T Consensus 496 a~~~~-~~itl~la~~vL~~~~~~~---------~~~~it~d~I~~~Va~~f~v~---~~dl~s~~R~~~i~~aRqiAMY 562 (617)
T PRK14086 496 ASLNR-QPVDLGLTEIVLRDLIPED---------SAPEITAAAIMAATADYFGLT---VEDLCGTSRSRVLVTARQIAMY 562 (617)
T ss_pred HHhhC-CCCCHHHHHHHHHHhhccc---------cCCcCCHHHHHHHHHHHhCCC---HHHHhCCCCCcccchHHHHHHH
Confidence 76655 5599999988887654321 122345556666666554321 1111111122111 11223
Q ss_pred ccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcc
Q 007989 527 IPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVT 564 (582)
Q Consensus 527 ~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~ 564 (582)
+-. .++... +.+|...+| |-.-.+++++..|.
T Consensus 563 L~r----~lt~~S-l~~IG~~Fg-RdHSTV~~A~~kI~ 594 (617)
T PRK14086 563 LCR----ELTDLS-LPKIGQQFG-RDHTTVMHADRKIR 594 (617)
T ss_pred HHH----HHcCCC-HHHHHHHhC-CChhHHHHHHHHHH
Confidence 211 112222 377888887 88888888764443
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6e-16 Score=174.08 Aligned_cols=213 Identities=19% Similarity=0.270 Sum_probs=153.9
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE-------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi------- 293 (582)
..+++++.+|+||+|++.+++.|...+.. .++|+++||+||+|+|||++|+++|+.++++-.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 34567788999999999999999888762 345778999999999999999999998865311
Q ss_pred Ee-echhHHHH----------hhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 294 SI-SGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 294 ~i-s~s~~~~~----------~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
.+ +|..+... -...+...++++++.+.. ....|+||||+|.+. ...++.||
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALL 140 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAML 140 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHH
Confidence 00 11111100 011233467777776532 234699999999881 23567788
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..|+.. ...+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++-.+.++..+...++. ++..+..|++...| +.
T Consensus 141 KtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 888743 3457778888888889888887 87 468888999999888888887765543 23347889999988 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+++.++++.+... +...|+.+++...+
T Consensus 215 RdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 215 RDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 9999999888764 34467877776654
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=4.7e-16 Score=170.31 Aligned_cols=269 Identities=15% Similarity=0.263 Sum_probs=175.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechhHHHHhhhhhhh---HHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~~~~~~vG~~~~---~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
.+++|||++|+|||+|++|+++++ +..++++++.+|...+...... .+.. |.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999998854 5788999999998876543222 2222 22211 245699999999984
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc---ccccccCCCCccc--eeeccCCCHHHHHHHHH
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILK 411 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~---LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~ 411 (582)
. .+..+..+..++..+. ...+.+|+++...|+. +++.|.+ ||.. .+.+.+|+.++|.+|++
T Consensus 220 ~---------k~~~~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 Y---------KEKTNEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred C---------CHHHHHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 2 2233444555554443 2333455555555543 5788888 8875 78899999999999999
Q ss_pred HHcCCCCC---CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHcCccCccccccccch
Q 007989 412 VHGSNKKF---DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAISSKEIDDSIDRIVAGMEGTVMTDGKSKS 487 (582)
Q Consensus 412 ~~l~~~~l---~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~-~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~ 487 (582)
..++...+ -++..++.|+....| +++.|.++|+.+...+.... ...||.+.+++++..+... ++.
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~----------~~~ 354 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTS----------KLG 354 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcccc----------ccC
Confidence 98876442 233347889999998 99999999999987765553 3679999999988764211 112
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcce----EEEeccCCCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCc
Q 007989 488 LVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARG----LTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEV 563 (582)
Q Consensus 488 ~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g----~~~~~p~~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~ 563 (582)
.+...++-++|+.++--. +..+.-..|.+..- ..+|+-. .+|... +.+|...+|||-+-.+++++..+
T Consensus 355 ~~t~~~I~~~Va~~~~i~---~~dl~s~~R~~~i~~~RqiamyL~r----~~t~~s-l~~IG~~FggrdHsTV~~a~~ki 426 (450)
T PRK14087 355 ILNVKKIKEVVSEKYGIS---VNAIDGKARSKSIVTARHIAMYLTK----EILNHT-LAQIGEEFGGRDHTTVINAERKI 426 (450)
T ss_pred CCCHHHHHHHHHHHcCCC---HHHHhCCCCCccccHHHHHHHHHHH----HHcCCC-HHHHHHHhCCCChHHHHHHHHHH
Confidence 355666777777654321 11121112221111 1223211 122223 47899999999999999987655
Q ss_pred ccChh
Q 007989 564 TTGAA 568 (582)
Q Consensus 564 ~~ga~ 568 (582)
..--.
T Consensus 427 ~~~~~ 431 (450)
T PRK14087 427 EKMLK 431 (450)
T ss_pred HHHHH
Confidence 54443
No 83
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=2.3e-15 Score=161.93 Aligned_cols=222 Identities=21% Similarity=0.265 Sum_probs=154.5
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechhHHH
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE 302 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~~~~ 302 (582)
...+.++|.++..+++...+...... ..|.+++|+||||||||++++.++.++ ++++++++|.....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35578999999999888877542211 234579999999999999999998876 57899999864321
Q ss_pred ----------Hhhhh-------hhh-HHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 303 ----------MFVGV-------GAS-RVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 303 ----------~~vG~-------~~~-~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
.+.+. ..+ .+..+.+... ...+.||+|||+|.+.... ..+.+..|+..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhc
Confidence 11110 111 1222233322 2456899999999995211 12356667666554
Q ss_pred ccCCCCeEEEEecCccc---cccccccCCCCcc-ceeeccCCCHHHHHHHHHHHcCCC----CCCccccHHHHHHhC---
Q 007989 364 FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADVSLDVIAMRT--- 432 (582)
Q Consensus 364 ~~~~~~viVIaaTN~~~---~LD~aLlrpgRFd-r~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvdl~~lA~~t--- 432 (582)
.. ..++.+|+++|..+ .+++.+.+ ||. ..+.+++++.++..+|++.+++.. .+ ++..++.+++.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV-DDEVLDLIADLTARE 244 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC-CHhHHHHHHHHHHHh
Confidence 43 23688888888653 56777766 664 478999999999999999887532 22 233356666666
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
.| ..+.+.++|..|+..|..++...|+.+|+.+|++++.
T Consensus 245 ~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 245 HG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 45 5677779999999999999999999999999998873
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=2.3e-15 Score=157.23 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=140.3
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
..+|.+++++.+|+|++|.+++++.+...+.. ...|+.+||+||||+|||++|++++++.+.+++++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 34688899999999999999999988888751 2346677779999999999999999999999999998
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
++ . . .......+.+...... ...+++|+|||+|.+. ..+.+..+..++++. ..++.+|.++
T Consensus 77 ~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~ 138 (316)
T PHA02544 77 SD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITA 138 (316)
T ss_pred Cc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEc
Confidence 76 1 1 1111111222111111 1356899999999882 223344454444432 3456788899
Q ss_pred CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC---------CCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---------NKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 377 N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~---------~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
|.++.+++++.+ ||. .+.++.|+.+++.++++..+. +..++++ .+..++....| |++.+++..
T Consensus 139 n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 139 NNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred CChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHH
Confidence 999999999999 885 789999999999877664322 2233322 24666665554 344555444
Q ss_pred HHHHHHhCCCccCHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~ 466 (582)
...+. ...++.+++..
T Consensus 211 ~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHc---cCCCCHHHHHH
Confidence 43332 24577666544
No 85
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=2.4e-15 Score=149.97 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=137.4
Q ss_pred cCCCCccccccc--chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 224 PNTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 224 ~~~~~~f~dI~G--~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
..++.+|+++.+ .+.+...+++... +...+.+++|+||||||||+||++++.++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 445678999773 3445554444443 12234589999999999999999998865 7799999998
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC-
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN- 377 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN- 377 (582)
++.+.+ .. ...+.+|+|||+|.+ +.+.+..+..++..+. .+...++|.+++
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERL-----------DDAQQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhc-----------CchHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 765321 11 223568999999988 2233445555555433 233433444443
Q ss_pred ccc--cccccccCCCCc--cceeeccCCCHHHHHHHHHHHcCCC--CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 378 RAD--ILDSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 378 ~~~--~LD~aLlrpgRF--dr~I~i~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
.|. .+.+.|.+ || ...+.+++|+.+++..+++.+.... .++++ .++.++..++| +.+++.++++.....|
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 332 34566776 77 3588999999988888888765443 44433 47888889999 9999999999976666
Q ss_pred HHhCCCccCHHHHHHHHH
Q 007989 452 GRRGKAAISSKEIDDSID 469 (582)
Q Consensus 452 ~r~~~~~It~~dl~~A~~ 469 (582)
...+ ..||...+++++.
T Consensus 208 ~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 4544 6899988887763
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.6e-15 Score=167.89 Aligned_cols=203 Identities=21% Similarity=0.316 Sum_probs=150.0
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p----------- 291 (582)
+++++.+|+||+|++.+++.|...+.. .+.|+.+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 567788999999999999999888863 2456678999999999999999999988541
Q ss_pred ------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHH
Q 007989 292 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (582)
Q Consensus 292 ------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~ 355 (582)
++.+++++ ..+...++++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33333221 1123456666554432 345799999999871 24577
Q ss_pred HHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCC
Q 007989 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPG 434 (582)
Q Consensus 356 ~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G 434 (582)
.|+..++.. ...+++|.+||.++.+.+.+.+ |+. .+++..|+.++..+.++..+.+..+. ++..+..++..+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888742 3457777788888999999998 775 78999999999999998887655543 33347889999988
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 435 ~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
+.+++.++++.+... ...||.+++.+.
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~ 236 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEA 236 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHH
Confidence 888888888877532 236888777665
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.1e-15 Score=171.82 Aligned_cols=213 Identities=16% Similarity=0.224 Sum_probs=152.0
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
+.+++++.+|+||+|++.+++.|.+.+.. .+.|+.+||+||+|||||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 45567788999999999999988888763 2456678999999999999999999998751
Q ss_pred ---EEE-eechhHHH--------H--hhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 ---FFS-ISGSEFVE--------M--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 ---fi~-is~s~~~~--------~--~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
+-. -+|..+.. . ....+...+|++.+.+... ...|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 000 01211111 0 0012334677777765432 23599999999992 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.|.||..++. ....+++|.+|+.++.+.+.+++ |+ .++++..++.++..+.++..+.+..+. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888774 34566777777778888888888 77 588999999999888888777554443 233478899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 98 999999998877654 34468877766543
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.67 E-value=1.8e-15 Score=173.43 Aligned_cols=211 Identities=23% Similarity=0.268 Sum_probs=145.3
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
+.++.++.+|+|++|++........+...+... ...+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 445667789999999999886422222222221 12379999999999999999999999999999887531
Q ss_pred HHHhhhhhhhHHHHHHHHHh-----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 301 VEMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~-----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
+.+.+++.++.+. .....+|||||+|.+ +...+ +.|+..++ +..+++|++
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQ---daLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQ---DALLPWVE----NGTITLIGA 143 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHH---HHHHHHhc----CceEEEEEe
Confidence 1123344444431 134579999999998 22233 34444444 345777776
Q ss_pred cC--ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC-------C--CCCCccccHHHHHHhCCCCcHHHHHHHH
Q 007989 376 TN--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-------N--KKFDADVSLDVIAMRTPGFSGADLANLL 444 (582)
Q Consensus 376 TN--~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~-------~--~~l~~dvdl~~lA~~t~G~sgadL~~lv 444 (582)
|+ ....+++++++ |+ +.+.+++++.+++..+++..+. . ..+++ ..++.|+...+| +.+++.+++
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~d-eaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEP-EAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCH-HHHHHHHHhCCC-CHHHHHHHH
Confidence 63 34568899998 65 4789999999999999988775 2 22333 337888998888 999999999
Q ss_pred HHHHHHHHHhC--CCccCHHHHHHHHHH
Q 007989 445 NEAAILAGRRG--KAAISSKEIDDSIDR 470 (582)
Q Consensus 445 ~eA~~~A~r~~--~~~It~~dl~~A~~~ 470 (582)
+.++..+...+ ...|+.+++++++.+
T Consensus 219 e~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 219 ELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 98875442222 223777888877755
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.67 E-value=1.5e-15 Score=177.67 Aligned_cols=217 Identities=21% Similarity=0.286 Sum_probs=150.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+-++++++|+++..+.+.+++.. .. ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r---~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR---RR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc---CC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 456899999999976655554432 11 2279999999999999999999875 2457788
Q ss_pred echhHHH--HhhhhhhhHHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 296 SGSEFVE--MFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 296 s~s~~~~--~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
+.+.+.. .+.|+.+++++.+|+.++. ..++||||||||.+.+.++.. +..+ .-|.|+..+ .+..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHh----hCCCeEE
Confidence 8877663 5788889999999999865 468999999999997655321 1111 122233333 2567999
Q ss_pred EEecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC----CC-ccccHHHHHHhCCCC-----cH
Q 007989 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FD-ADVSLDVIAMRTPGF-----SG 437 (582)
Q Consensus 373 IaaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~----l~-~dvdl~~lA~~t~G~-----sg 437 (582)
|+||+..+ .+|++|.| ||. .|.++.|+.+++.+||+.+.+... +. .+..+..++..+.+| -+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99999754 38999999 996 899999999999999866543322 11 233466666666553 34
Q ss_pred HHHHHHHHHHHHHHHHh-CCCccCHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRR-GKAAISSKEIDDS 467 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~-~~~~It~~dl~~A 467 (582)
.-.-.++.+|+...... ....+..+++++.
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~ 427 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRR 427 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 45567788887655432 3333444444433
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.2e-15 Score=169.05 Aligned_cols=205 Identities=22% Similarity=0.330 Sum_probs=152.7
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (582)
.++.++.+|+||+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.++++
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3566788999999999999999888763 2356689999999999999999999987542
Q ss_pred --------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++.++++ ...+...+|++.+.+.. ....|++|||+|.+. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a 135 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGA 135 (559)
T ss_pred cHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHH
Confidence 2222221 11234567777777643 234699999999982 246
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.|.||..++. +...+++|.+|+.++.+.+.+++ |+. .+.|..|+.++..+.++..+++..+. ++..+..++...
T Consensus 136 ~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 136 FNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7788888874 34567777778888999999998 885 68899999999888888877655433 233477888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.| +.+++.+++..+...+ ...|+.+++.+.
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 88 9999999998886553 346787766654
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.67 E-value=1.9e-15 Score=159.99 Aligned_cols=207 Identities=22% Similarity=0.350 Sum_probs=151.2
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
+.++.++.+|+|++|++++++.+.+.+.. .+.|+.+||+||||+|||++|+++|+.+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45667789999999999999998887752 2356689999999999999999999987543
Q ss_pred ---------------EEEeechhHHHHhhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHH
Q 007989 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (582)
Q Consensus 292 ---------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (582)
++.+++.+ ..+...++++++.+... ...|++|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 22222211 11233567777766432 23599999999982 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHh
Q 007989 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (582)
Q Consensus 353 ~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (582)
..+.|+..++.. ...+++|.+|+.++.+.+++.+ |+. .+++++|+.++..++++.++++.... ++..+..++..
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567778877642 3457777778888888899988 874 78999999999999999887665533 23346778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.| +.+.+.+.++.+...+ ...||.+++++++
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 877 8888888888777654 2348988887665
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=168.19 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=151.0
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------EE
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------i~ 294 (582)
.++.++.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.. -.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456678999999999999988887763 24566789999999999999999999986631 11
Q ss_pred e-echhHHH-----Hh-----hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh
Q 007989 295 I-SGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (582)
Q Consensus 295 i-s~s~~~~-----~~-----vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (582)
+ +|..+.. .+ ...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK 141 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLK 141 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHH
Confidence 0 0111100 00 01233457777776643 234699999999982 235678888
Q ss_pred hhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHH
Q 007989 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (582)
Q Consensus 360 ~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (582)
.++. ....+++|.+|+.++.+.+.+++ |+ ..++|..++.++-.+.+...+...... ++..+..++..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8875 34567777777778888888888 77 589999999998888887776544433 23346788888888 999
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
++.++++.+... +...|+.+++.+.+
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 999999888654 35568877776654
No 93
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=6.7e-15 Score=160.89 Aligned_cols=305 Identities=14% Similarity=0.167 Sum_probs=182.4
Q ss_pred CCCCcccccc-cchHH--HHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 225 NTGVTFDDVA-GVDEA--KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 225 ~~~~~f~dI~-G~d~~--k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
.+..+|++.+ |.... ...++++.. .+.. ......++++||||||+|||+|++++++++ +.+++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~---~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTK---VSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHh---cccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4567899987 53322 233333322 1110 011122479999999999999999999875 7899999998
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
+|...+.......-.+.|.... ..+++|+|||++.+.++. ..++.+..+++.+. .....+|+++++.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~---~~~k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLH---TEGKLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHH---HCCCcEEEecCCC
Confidence 8877654332221122344433 346799999999984321 22233333333221 1234566666555
Q ss_pred cc---cccccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH---
Q 007989 379 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI--- 449 (582)
Q Consensus 379 ~~---~LD~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~--- 449 (582)
|. .+++.|.+ ||. ..+.+++|+.++|.+|++..+....+. ++..++.++....+ +.++|.+.++..+.
T Consensus 246 p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a 322 (445)
T PRK12422 246 PQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVA 322 (445)
T ss_pred HHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 54 46789998 996 588999999999999999887665433 23336778888887 99999999998853
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccC
Q 007989 450 LAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPS 529 (582)
Q Consensus 450 ~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~ 529 (582)
.+...+ ..||.+++++++.......++ ..+...++-++|+.++--. +..+.-..|....-+..++.+
T Consensus 323 ~~~~~~-~~i~~~~~~~~l~~~~~~~~~---------~~~t~~~I~~~Va~~~~v~---~~dl~s~~R~~~i~~~Rqiam 389 (445)
T PRK12422 323 YKKLSH-QLLYVDDIKALLHDVLEAAES---------VRLTPSKIIRAVAQYYGVS---PESILGRSQSREYVLPRQVAM 389 (445)
T ss_pred HHHhhC-CCCCHHHHHHHHHHhhhcccC---------CCCCHHHHHHHHHHHhCCC---HHHHhcCCCCcccccHHHHHH
Confidence 332333 569999999999876432211 1233445555555544311 111111122222211111111
Q ss_pred CCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcccC
Q 007989 530 DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTG 566 (582)
Q Consensus 530 ~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~g 566 (582)
.-...+|... +.+|...+| |-+-.++++...|..-
T Consensus 390 yl~r~~t~~s-~~~IG~~fg-rdHsTV~~a~~ki~~~ 424 (445)
T PRK12422 390 YLCRQKLSLS-YVKIGDVFS-RDHSTVISSIRAISQK 424 (445)
T ss_pred HHHHHhcCCC-HHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 0011122333 378999997 9999999987665543
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=8e-15 Score=147.63 Aligned_cols=207 Identities=13% Similarity=0.137 Sum_probs=137.4
Q ss_pred cCCCCcccccc-c-chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 224 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 224 ~~~~~~f~dI~-G-~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
-.+..+|++.+ | ...+...+.++.. .+ .+..++|+||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44567899887 4 3444444444432 11 12379999999999999999998865 4557777776
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC-eEEEEecC
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATN 377 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~-viVIaaTN 377 (582)
++... ..++++.... ..+|+|||+|.+.. ....+..+..++..+-. +.+ .+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCCC
Confidence 54321 1122222222 25899999999832 23344455555544321 233 45666666
Q ss_pred cccc---ccccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 378 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 378 ~~~~---LD~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
.|.. +.|.|.+ |+. .++.+.+|+.+++.++++.++....+. ++..++.++.+.+| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 6666 5789999 886 588999999999999998865543332 23337899999998 9999999999965444
Q ss_pred HHhCCCccCHHHHHHHH
Q 007989 452 GRRGKAAISSKEIDDSI 468 (582)
Q Consensus 452 ~r~~~~~It~~dl~~A~ 468 (582)
..+ +..||.+.+++++
T Consensus 218 l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 218 ITA-QRKLTIPFVKEIL 233 (235)
T ss_pred Hhc-CCCCCHHHHHHHH
Confidence 333 3559988888765
No 95
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=3.4e-16 Score=169.54 Aligned_cols=217 Identities=26% Similarity=0.422 Sum_probs=156.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeechhHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFV 301 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s~~~ 301 (582)
+...+|+||+|.+++..++.+.+...... +-.|||.|++||||.++|+++-+ +.+.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~t----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKT----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCC----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 34578999999999999999988865544 44899999999999999999965 458899999998776
Q ss_pred HHh-------------hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--CccC
Q 007989 302 EMF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG 366 (582)
Q Consensus 302 ~~~-------------vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~~ 366 (582)
+.. .|....--..+|+.|..+ .||+|||..+ +...|..+.+.|++-+ .+.+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 532 222222245678888666 8999999888 5667777777777532 1111
Q ss_pred ----CCCeEEEEecCc--cccccccccCCCCccc--eeeccCCCHHHHHHHHHH----Hc--------CCC-CCCccccH
Q 007989 367 ----NTGIIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTEILKV----HG--------SNK-KFDADVSL 425 (582)
Q Consensus 367 ----~~~viVIaaTN~--~~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~----~l--------~~~-~l~~dvdl 425 (582)
.-+|.||||||+ .+.+...-+|...|.| ++.+..|++.+|.+-+.. ++ +.. .+++++-.
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 236999999997 2334444444444444 889999999999883322 11 122 25666666
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHH
Q 007989 426 DVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID-DSI 468 (582)
Q Consensus 426 ~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~-~A~ 468 (582)
..+...||| |.++|+|++..+...+ .....|+.+|+. .++
T Consensus 455 ~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 455 LLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred HHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 777889999 9999999999999855 344458888877 444
No 96
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.1e-16 Score=170.78 Aligned_cols=176 Identities=27% Similarity=0.412 Sum_probs=135.0
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
+.+......+-=.|-.|++++|+++.|.+.-.+.... +. ..-++|+||||+|||+|++.+|+.++.+|+.++..
T Consensus 311 ~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~---~k---GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG 384 (782)
T COG0466 311 KLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK---LK---GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG 384 (782)
T ss_pred hhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc---CC---CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC
Confidence 3344344445557889999999999987765433321 11 12589999999999999999999999999999976
Q ss_pred hHHH---------HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC---
Q 007989 299 EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--- 366 (582)
Q Consensus 299 ~~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~--- 366 (582)
...+ .|+|..+.++-+-..+|...+| +++|||||.++..-. |+ --..||+-+|.-.+
T Consensus 385 GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GD-----PaSALLEVLDPEQN~~F 453 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GD-----PASALLEVLDPEQNNTF 453 (782)
T ss_pred ccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CC-----hHHHHHhhcCHhhcCch
Confidence 5543 5899999999999999988888 666899999964321 11 22345555543211
Q ss_pred ----------CCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHc
Q 007989 367 ----------NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 367 ----------~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
-++|++|||+|..+.++.+|+. |+. +|++.-+...+..+|-+.|+
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 1369999999999999999999 886 89999999999999999887
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.2e-15 Score=167.44 Aligned_cols=207 Identities=20% Similarity=0.276 Sum_probs=149.3
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
+.+++++.+|+||+|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 45667889999999999999988888762 2345689999999999999999999988763
Q ss_pred ---------------EEEeechhHHHHhhhhhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHH
Q 007989 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (582)
Q Consensus 292 ---------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (582)
++.+++.. ..+...++.+.+.+. .....||||||+|.+. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~ 134 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------RE 134 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HH
Confidence 33333211 011233444433332 2335699999999992 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHh
Q 007989 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (582)
Q Consensus 353 ~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (582)
.++.|+..++. ....+++|.+||.++.+.+.+++ |+. .+.|+.++.++..++++..+...... ++..++.++..
T Consensus 135 a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 135 AFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46777887764 33467888888888888888888 874 78999999999998888776554432 33347888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.| +.+++.++++.++ + .+...|+.+++.+++
T Consensus 210 s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 888 8888888888653 2 355579988877665
No 98
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=2.4e-15 Score=176.31 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=143.5
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+-++++++|.++..+.+.+++..-. ..+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~------------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRT------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCC------------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 45689999999997666555554322 2279999999999999999999987 7899999
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
+.+.+. .++.|..+++++.+|+.+.. ..|+||||||+|.+.+.+.+ .+.......+...+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l-------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPAL-------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchh-------hcCCCeE
Confidence 888876 35788889999999998644 57899999999999765432 11222223332222 3578999
Q ss_pred EEecCcccc-----ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-----cccHHHHHHhC-----CCCcH
Q 007989 373 IAATNRADI-----LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMRT-----PGFSG 437 (582)
Q Consensus 373 IaaTN~~~~-----LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-----dvdl~~lA~~t-----~G~sg 437 (582)
|+||+..+. +|+++.| ||+ .|.++.|+.+++..|++.+........ +..+...+..+ ..+-+
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~p 387 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLP 387 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCC
Confidence 999998773 8999999 998 688999999999999987664432221 21222222332 23445
Q ss_pred HHHHHHHHHHHHHH
Q 007989 438 ADLANLLNEAAILA 451 (582)
Q Consensus 438 adL~~lv~eA~~~A 451 (582)
.....++.+++...
T Consensus 388 dkAi~LiD~aaa~~ 401 (857)
T PRK10865 388 DKAIDLIDEAASSI 401 (857)
T ss_pred hHHHHHHHHHhccc
Confidence 55666777776544
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.3e-15 Score=168.55 Aligned_cols=214 Identities=22% Similarity=0.317 Sum_probs=155.9
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE---Eee
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SIS 296 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi---~is 296 (582)
.+.+++++.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|..+.++-- .-.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 356677889999999999999998888862 245678999999999999999999998866321 011
Q ss_pred chhHHH---H----h--hh---hhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh
Q 007989 297 GSEFVE---M----F--VG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (582)
Q Consensus 297 ~s~~~~---~----~--vG---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ 360 (582)
|..... . + -+ .+...+|++.+.+.. ....|++|||+|.+. ....+.||..
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKt 141 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKT 141 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHH
Confidence 222111 0 0 01 224457777777653 234699999999982 2367788888
Q ss_pred hcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHH
Q 007989 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGAD 439 (582)
Q Consensus 361 ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgad 439 (582)
|+. +...+++|.+|+.++.|.+.+++ |+. ++.+.+|+.++..+.++..+.+..+. .+..+..++..+.| +.++
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~ 215 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRD 215 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 34567888888889999999998 885 79999999999988888766554433 22337788999988 8999
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 440 LANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 440 L~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.++++.+.... ...|+.+++.+++
T Consensus 216 AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 999988876543 2348888877653
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.6e-15 Score=165.66 Aligned_cols=211 Identities=19% Similarity=0.199 Sum_probs=150.1
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEe
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~i 295 (582)
+++++.+|+||+|++.+++.|...+.. .+.|+.+||+||+|||||++|+++|+.+++. +-.+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 567788999999999999998888762 2456678999999999999999999988652 1110
Q ss_pred -echhHHHH---------hhh---hhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 296 -SGSEFVEM---------FVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 296 -s~s~~~~~---------~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
+|-.+... +-+ .+...+|++.+.+.. ....|++|||+|.+. ....|.||
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALL 139 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALL 139 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHH
Confidence 11111100 001 123445655554422 234699999999992 23677888
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..|+. ....+++|.+|+.++.+.+.+++ |+ .+++|..++.++..+.++..+++.... ++..+..++....| +.
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dl 213 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SP 213 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88874 34567888888888999999998 76 478999999998888888877654432 33346778888887 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
+++.++++.++..+ +...||.+++.+.
T Consensus 214 R~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 214 RDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 99999999876543 3456777776655
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.6e-15 Score=164.28 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=146.6
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~----------- 290 (582)
.++.++.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4566788999999999999988877752 234667999999999999999999998764
Q ss_pred -------------CEEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 291 -------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
.++.+++.. ..+...++++.+.+.. ....|++|||+|.+ + ...
T Consensus 76 C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s---~~a 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------S---KQS 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------c---HHH
Confidence 122222110 1122345666655532 23469999999998 2 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.+.||..++. ....+++|.+|+.+..+.+.+++ |+ ..+++..++.++-.+.++..++..... ++..+..++..+
T Consensus 136 ~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 136 FNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6777777774 33456677677778888888888 77 589999999998888887766554432 334477888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.| +.+++.++++.+...+ + ..|+.++++++
T Consensus 211 ~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 211 KG-SLRDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 87 9999999998887553 2 45777777764
No 102
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.64 E-value=4.6e-15 Score=173.73 Aligned_cols=163 Identities=23% Similarity=0.358 Sum_probs=127.4
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
..-.+++++|.++..+.+.+++.. +.+.+++|+||||||||++|+++|.+. +.+++.+
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345689999999999988877652 234489999999999999999999976 4789999
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
+++.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+..+. .+.......+... + .+..+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~~a~lLkp~---l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAIDAANILKPA---L----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCcccHHHHhHHH---H----hCCCcEEE
Confidence 998887 3678888999999999998888999999999999765432 1111222222222 2 25679999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~ 413 (582)
++|+..+ ..|+++.+ ||+ .|.++.|+.++...|++..
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 9999765 37899999 997 5899999999998988743
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.9e-15 Score=165.25 Aligned_cols=212 Identities=18% Similarity=0.241 Sum_probs=150.0
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-----EE
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FS 294 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-----i~ 294 (582)
.+.+++++.+|+|++|++.+++.|.+.+.. .+.|+++||+||||+|||++|+++|..+.+.- ..
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456777889999999999999988887642 34567899999999999999999999875410 00
Q ss_pred eechhHH-----------H--HhhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 295 ISGSEFV-----------E--MFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 295 is~s~~~-----------~--~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
-.|.... + .....+...+|++.+.+... ...|++|||+|.+- ....+.|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 1111110 0 00012234567776665432 23599999999982 1245677
Q ss_pred HhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHhCCCC
Q 007989 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGF 435 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t~G~ 435 (582)
+..|+. +...+++|.+|+.++.+.+++++ |+. .+++..|+..+....++..+...+ +++ ..+..++..+.|
T Consensus 140 LKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~-eal~~La~lS~G- 212 (605)
T PRK05896 140 LKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIED-NAIDKIADLADG- 212 (605)
T ss_pred HHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-
Confidence 777774 34567888888889999999998 885 789999999998888887765544 333 347788888888
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 436 SGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 436 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
+.+++.++++.+...+ +. .|+.+++.+.
T Consensus 213 dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 213 SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 8999888888865543 32 3888777764
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.8e-15 Score=158.43 Aligned_cols=215 Identities=20% Similarity=0.343 Sum_probs=148.8
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
.+.+++++.+|+|++|++.+++.+.+.+.. .+.|+++|||||||+|||++|+++|+...++.....+.+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 355677889999999999999988877752 235678999999999999999999998765321111111
Q ss_pred HH------HHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC
Q 007989 300 FV------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (582)
Q Consensus 300 ~~------~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~ 369 (582)
+. +.....+...++.+++.+.. ..+.||+|||+|.+. ...++.|+..++.. ...
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~~ 138 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PAH 138 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCc
Confidence 00 00011223567777776643 234699999999882 12456777766642 334
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
.++|.+++.++.+.+++.+ |+. .++++.|+.++...++...+.+.+.. ++..++.++..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5666667777888899988 664 68999999999888888766655542 33457888888877 8888888887776
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~ 469 (582)
.++ +.. ||.+++++.+.
T Consensus 215 ~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred Hhc---CCC-CCHHHHHHHhC
Confidence 654 333 88877776643
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=5e-15 Score=171.76 Aligned_cols=212 Identities=20% Similarity=0.188 Sum_probs=148.4
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEE
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~ 294 (582)
.+++++.+|+||+|++.+++.|...+.. .++++.+||+||+|||||++|+.||+.++|. +-.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4677889999999999999988888762 3456679999999999999999999998752 111
Q ss_pred e-echhHHHH---------hhh---hhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 295 I-SGSEFVEM---------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 295 i-s~s~~~~~---------~vG---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
+ +|-.+... +-+ .+...+|++.+.+. .....|+||||+|.| + ....|.|
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t---~~a~NaL 140 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------T---PQGFNAL 140 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------C---HHHHHHH
Confidence 0 11111100 000 12334555544332 234579999999999 2 2456777
Q ss_pred HhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCc
Q 007989 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFS 436 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~s 436 (582)
|+.|+.. ...+++|.+|+.++.|-+.|++ |+ .++.|..++.++..++|+..+++..+. ++..+..+++...| +
T Consensus 141 LK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777743 3467777778888889889988 77 488999999999888888877655443 33346778888887 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 437 GADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 437 gadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.+++.++++..+..+ +...||.+++...
T Consensus 215 lR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 215 VRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 999998888866433 3456777766543
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6.4e-15 Score=166.00 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=150.6
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (582)
.+++++.+|+||+|++.+++.|...+.. .+.|+.+||+||+|+|||++|+++|+.++++
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3566788999999999999999888762 2457789999999999999999999998653
Q ss_pred --------------EEEeechhHHHHhhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++.+++.+ ..+...++++.+.+... ...|++|||+|.+. ...
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNA 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHH
Confidence 22222211 12334577777666422 23599999999982 235
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.|.|+..|+. +...+++|.+|+.++.|.+.+++ |+. .++|..++..+-...++..+++..+. ++..+..++..+
T Consensus 136 ~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 136 FNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 6788888874 34567888888889999999998 774 78899999888888777766554433 334478889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.| +.+++.+++..+..+. + ..|+.+++.+.
T Consensus 211 ~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 98 8999999988777654 2 34777776554
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=160.86 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=149.9
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEE
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 293 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-------pfi 293 (582)
+..++++.+|+|++|++.+++.|...+.. .+.++.+||+||||+|||++|+.+|..+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 44566788999999999999988888753 234567899999999999999999998764 111
Q ss_pred E-eechhHHH-----Hh-----hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 294 S-ISGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 294 ~-is~s~~~~-----~~-----vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
. .+|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+. ....+.|+
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLL 140 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALL 140 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHH
Confidence 1 11211111 00 01223345666555532 335799999999882 23457777
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..++.. +..+++|.+|+.++.+.+++.+ |+. .+.+++|+.++....++.+++...+. ++..+..++..+.| +.
T Consensus 141 k~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777643 3456666667778888888888 775 78999999999999999887765543 23347788888888 89
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+++.++++.+...+ ...||.+++++++
T Consensus 215 r~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 99999998887543 3468888887754
No 108
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=3.7e-15 Score=153.80 Aligned_cols=205 Identities=27% Similarity=0.440 Sum_probs=139.3
Q ss_pred CCCCcccccccchHHHHH---HHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEeech
Q 007989 225 NTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGS 298 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~---L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~s 298 (582)
-++-+++|.+|+++...+ |+.+++.-+-| .++|+||||||||+|||.++....-+ |+.+++.
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ip------------SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIP------------SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCCCC------------ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 346689999999987655 33333332222 69999999999999999999988766 7777763
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhh-----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~-----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
......+|++|+++++ ....|||||||+.+- ...+. .||-..+ +..|++|
T Consensus 200 -------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD---~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 200 -------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQD---TFLPHVE----NGDITLI 254 (554)
T ss_pred -------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhh---cccceec----cCceEEE
Confidence 3345678999999865 345799999999983 22222 2343332 5678999
Q ss_pred Eec--CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC------C--CCCC------ccccHHHHHHhCCCCcH
Q 007989 374 AAT--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS------N--KKFD------ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 374 aaT--N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~------~--~~l~------~dvdl~~lA~~t~G~sg 437 (582)
+|| |..=.|..+|++ |+ +++.+.....+.-..||.+-.. + .++. .+--++.++..+.|- .
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD-a 330 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD-A 330 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch-H
Confidence 887 555578999999 77 5788888888888888876322 1 0111 222378889999983 3
Q ss_pred HHHHHHHHHH-HHHHHHhC---CCccCHHHHHHHHHH
Q 007989 438 ADLANLLNEA-AILAGRRG---KAAISSKEIDDSIDR 470 (582)
Q Consensus 438 adL~~lv~eA-~~~A~r~~---~~~It~~dl~~A~~~ 470 (582)
+---|.++.+ .+...|.| +..++.+|+++++.+
T Consensus 331 R~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 3333334333 23334444 457888999988865
No 109
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.62 E-value=2e-14 Score=149.58 Aligned_cols=208 Identities=22% Similarity=0.285 Sum_probs=141.7
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEE
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (582)
.+|.+++++.+|+|++|.+++++.+...+..- ..| +++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-----------~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-----------NMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-----------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 46888999999999999999999888877521 112 589999999999999999999873 3455
Q ss_pred EeechhHHHHhhhhhhhHHHHHHHHHhh------CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 294 ~is~s~~~~~~vG~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
.+++++-.. ...+++.+..... ..+.+|+|||+|.+. .+.+ +.|+..++....
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~---~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQ---QALRRTMEMYSQ- 131 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHH---HHHHHHHhcCCC-
Confidence 555433111 1112222222211 235699999999982 2223 344444444333
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (582)
...+|.++|.+..+.+++.+ |+. .+++++|+.++...+++.++++.... ++..++.++..+.| +.+.+.+.++.
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34555567777777777887 775 68999999999999999887655432 33357888888877 77777777765
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH
Q 007989 447 AAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 447 A~~~A~r~~~~~It~~dl~~A~~ 469 (582)
++.. ...||.+++..++.
T Consensus 207 ~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHc-----CCCCCHHHHHHHhC
Confidence 5432 35799999887763
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=9.9e-15 Score=157.11 Aligned_cols=182 Identities=19% Similarity=0.331 Sum_probs=127.9
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE----------------
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---------------- 292 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf---------------- 292 (582)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|..+.++-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999986433 23345666889999999999999999999999875531
Q ss_pred -------EEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh
Q 007989 293 -------FSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (582)
Q Consensus 293 -------i~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l 361 (582)
..+.... ...+...+|++++.+.. ....|+||||+|.+ +. ...|.||..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~---~aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TE---RAANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CH---HHHHHHHHHh
Confidence 1111110 11223457888887754 23469999999999 22 2447788877
Q ss_pred cCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHH
Q 007989 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADL 440 (582)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL 440 (582)
+.. ..+.++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+.+.... ... +.....++..+.|..++.+
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 743 3344555555558999999999 88 589999999998887776322 233 3346678888888555443
No 111
>PRK08727 hypothetical protein; Validated
Probab=99.62 E-value=4.4e-14 Score=142.04 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=139.0
Q ss_pred ccCCCCcccccccchH-HHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 223 EPNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~-~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
...+..+|++.++.++ ....+.... .. .....++|+||+|||||+|++|++.++ +....+++..
T Consensus 11 ~~~~~~~f~~f~~~~~n~~~~~~~~~---~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGLLAQLQALA---AG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCcCChhhccCCcHHHHHHHHHHH---hc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 3455678999876554 222222111 11 122459999999999999999997654 6777888876
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++... +.+.++... ...+|+|||+|.+.. ....+..+..++.... .+..-+|+++.+.
T Consensus 79 ~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~---~~~~~vI~ts~~~ 136 (233)
T PRK08727 79 AAAGR--------LRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRAR---AAGITLLYTARQM 136 (233)
T ss_pred Hhhhh--------HHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH---HcCCeEEEECCCC
Confidence 65433 233444433 335999999999842 2223445555655542 1222344444456
Q ss_pred cccc---cccccCCCCc--cceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 379 ADIL---DSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 379 ~~~L---D~aLlrpgRF--dr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
|+.+ ++.|.+ || ...+.+++|+.+++.+|++.++....+. ++..++.|+..++| +.+.+.++++.....+.
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6655 789998 87 3478999999999999999876543332 33347889999988 88888888887766555
Q ss_pred HhCCCccCHHHHHHHHHH
Q 007989 453 RRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 453 r~~~~~It~~dl~~A~~~ 470 (582)
..+ ..||...+++.+..
T Consensus 214 ~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HhC-CCCCHHHHHHHHhh
Confidence 554 47999888887753
No 112
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=159.97 Aligned_cols=206 Identities=21% Similarity=0.280 Sum_probs=149.1
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------- 291 (582)
+.+++++.+|+||+|++.+++.|...+.. .+.|+.+|||||||+|||++|+++|+.+.++
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 44567889999999999999999888752 2456778999999999999999999987431
Q ss_pred ---------------EEEeechhHHHHhhhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHH
Q 007989 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (582)
Q Consensus 292 ---------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (582)
++.+++++ ..+...++++.+..... ...|++|||+|.+ + ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t---~~ 132 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------T---KE 132 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------C---HH
Confidence 22222111 01234567776654321 2359999999998 2 24
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHh
Q 007989 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (582)
Q Consensus 353 ~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (582)
..+.||..++.. ...+.+|.+|+.+..+.+++++ |+ .++++.+++.++-.+.++..+...+.. ++..+..++..
T Consensus 133 A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 133 AFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567778888754 3456667677778999999999 86 488999999998888888776654432 33457888998
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
..| +.+++.+++..+...+ ...||.+++.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 888 9999999999887665 235777666543
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.61 E-value=2.6e-14 Score=152.81 Aligned_cols=300 Identities=19% Similarity=0.261 Sum_probs=197.2
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeech
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s 298 (582)
-.+..+|++.+.-+.-.....-....-..|.. .-..++||||+|.|||+|++|+++++ +..+++++.+
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 34577999987665544333333333333321 22369999999999999999998876 3468999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
+|...++......-.+-|+.-. .-.+++||+|+.+.++... ..+.-.++|.+.. +.+.+|+.+...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~~-------~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALLE-------NGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHHHh-------cCCEEEEEcCCC
Confidence 9998887665554455677666 4469999999999644321 2334444554443 445677777777
Q ss_pred cccc---cccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 379 ADIL---DSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 379 ~~~L---D~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
|..+ ++.|.+ ||.. .+.+.+||.+.|.+||+.......+. ++.....++.+... +.++|+.+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 7755 588888 9988 78899999999999999866555443 23337788888887 99999999999999997
Q ss_pred HhCCCccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCC
Q 007989 453 RRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDP 532 (582)
Q Consensus 453 r~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~ 532 (582)
..++ .||.+.+.+++.......+ + +...++-+.|+.++-- +++.+.-..|.+..-...++.+.-.
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~~----------~-itie~I~~~Va~~y~v---~~~dl~s~~R~~~i~~~RqiamyL~ 360 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAGE----------K-ITIEDIQKIVAEYYNV---KVSDLLSKSRTRNIVRPRQIAMYLA 360 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhcccc----------c-CCHHHHHHHHHHHhCC---CHHHhhccccccccchHHHHHHHHH
Confidence 7766 8999999999887765433 2 4445555555544321 2222222222222222111111100
Q ss_pred CcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcc
Q 007989 533 TLISKQQLFARIVGGLGGRAAEEVIFGEPEVT 564 (582)
Q Consensus 533 ~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~ 564 (582)
..+|... +.+|...+| |.+-.+++.+..|.
T Consensus 361 r~lt~~S-lp~IG~~Fg-rdHtTV~~a~~kI~ 390 (408)
T COG0593 361 RELTNLS-LPEIGKAFG-RDHTTVLHAVRKIE 390 (408)
T ss_pred HHHccCc-HHHHHHHhC-CCccHHHHHHHHHH
Confidence 1112222 378888899 99998888765443
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.1e-14 Score=157.53 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=149.2
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 294 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~------ 294 (582)
..++.++.+|+||+|++.+++.|+..+.. .+.|+++||+||||+|||++|+++|+++.+.-..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 34567788999999999999988877752 3467789999999999999999999998763100
Q ss_pred ----e------echhHHH-------Hhhh---hhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHH
Q 007989 295 ----I------SGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (582)
Q Consensus 295 ----i------s~s~~~~-------~~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 350 (582)
- +|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------- 140 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------- 140 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------
Confidence 0 1111110 0111 123456666555522 223599999999982
Q ss_pred HHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHH
Q 007989 351 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIA 429 (582)
Q Consensus 351 ~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA 429 (582)
....+.|+..++. .....++|.+|+.++.+-+++.+ |+. .+++.+++.++-.+.++..++..... ++..++.++
T Consensus 141 ~~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2345667777763 23455666666667888888887 775 78999999888888877766544322 333478888
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 007989 430 MRTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (582)
Q Consensus 430 ~~t~G~sgadL~~lv~eA~~~A~r-~~~~~It~~dl~~A~ 468 (582)
..+.| +.+.+.+.++.+..++.. .....|+.+++++.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88887 889998988888777642 234578988887665
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.8e-14 Score=162.19 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=154.7
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe----
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI---- 295 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i---- 295 (582)
...+++++.+|+||+|++.+++.|...+.. .+.|+++||+||+|+|||++|+++|+.+++.....
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 345677889999999999999999887762 34677899999999999999999999886542111
Q ss_pred ---------echhHHHH--------h--hhhhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHH
Q 007989 296 ---------SGSEFVEM--------F--VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (582)
Q Consensus 296 ---------s~s~~~~~--------~--vG~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~ 352 (582)
+|..+.+. - ...+...+|++++.+... ...|++|||+|.+. ..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~ 147 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TA 147 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HH
Confidence 12111110 0 012345677887776432 24699999999982 23
Q ss_pred HHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHh
Q 007989 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (582)
Q Consensus 353 ~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~ 431 (582)
..|.||..|+.. ...+++|.+|+.++.+.+.+++ |+. .+++..|+.++....++..+++.... ++..++.|+..
T Consensus 148 a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 148 AFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888877743 3456777777777788888888 874 78999999999888888877655433 23347788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.| +.+++.++++.+.... ...||.+++.+.+
T Consensus 223 a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ll 254 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDML 254 (598)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHh
Confidence 888 9999999998876542 3468988887655
No 116
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.4e-14 Score=160.43 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=151.0
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEE
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~ 294 (582)
..+.++.+|+||+|++.+++.|+..+.. .+.|+.+||+||||+|||++|+++|+.++++ +-.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3456788999999999999998888762 2456789999999999999999999988652 111
Q ss_pred e-echhHHHH-------hhh---hhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh
Q 007989 295 I-SGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (582)
Q Consensus 295 i-s~s~~~~~-------~vG---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (582)
+ +|..+... +-| .+...++++.+.+. .....|++|||+|.+. ...+|.||.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK 141 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLK 141 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHH
Confidence 1 11111110 011 12245566655443 2345699999999981 246778888
Q ss_pred hhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHH
Q 007989 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (582)
Q Consensus 360 ~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sga 438 (582)
.++. +...+++|.+|+.++.+.+++++ |+. .+++.+++.++..+.++..+...... ++..+..++....| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 44567888888888899999998 885 68999999999988888776544432 33447788988888 999
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
++.++++.+...+ ...|+.+++.+++
T Consensus 216 ~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 9999998876553 2458887777654
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=1.3e-14 Score=170.52 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=144.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+-.+++++|.++..+.+.+++.. . ...+++|+||||||||++|+++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r---~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR---R---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc---C---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 455789999999976665555532 1 12378999999999999999999975 6789999
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
+.+.+. ..|.|..+.+++.+|+.+.. ..|+||||||||.+.+.+.. .+.. ...+.|... ..+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~---d~~~~Lk~~----l~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAM---DAGNMLKPA----LARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchh---HHHHHhchh----hhcCceEE
Confidence 888876 46788888999999998865 45899999999999754322 1111 122323222 23567999
Q ss_pred EEecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-----cccHHHHHHhCCCC-----cH
Q 007989 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-----DVSLDVIAMRTPGF-----SG 437 (582)
Q Consensus 373 IaaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-----dvdl~~lA~~t~G~-----sg 437 (582)
|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+........ +..+...+..+.+| -+
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999875 37999999 996 689999999999999987655443322 22344445544443 34
Q ss_pred HHHHHHHHHHHHHHH
Q 007989 438 ADLANLLNEAAILAG 452 (582)
Q Consensus 438 adL~~lv~eA~~~A~ 452 (582)
.-.-.++++|+..+.
T Consensus 383 dkAidlld~a~a~~~ 397 (852)
T TIGR03346 383 DKAIDLIDEAAARIR 397 (852)
T ss_pred hHHHHHHHHHHHHHH
Confidence 455677777776553
No 118
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=3e-14 Score=154.15 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=131.4
Q ss_pred cccchHHHHHHHHHHHH----hcCchhhhhhcCC-CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhh
Q 007989 233 VAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG 306 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~----l~~p~~~~~~g~~-~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG 306 (582)
|+|++++|+.+...+.. +........ ... ...++||+||||||||++|+++|..+++||+.++++.+.+ .|+|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 89999999999766532 221110000 111 2358999999999999999999999999999999988764 5666
Q ss_pred hhhhH-HHHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCe
Q 007989 307 VGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGI 370 (582)
Q Consensus 307 ~~~~~-vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~-----------~~~~v 370 (582)
..... +..+++.+ ....++||||||||.+..++.......+...+.+.+.||..||+-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 64433 34444322 2346789999999999766332111111122335555666665421 11235
Q ss_pred EEEEecCccc----------------------------------------------------cccccccCCCCccceeec
Q 007989 371 IVIAATNRAD----------------------------------------------------ILDSALLRPGRFDRQVTV 398 (582)
Q Consensus 371 iVIaaTN~~~----------------------------------------------------~LD~aLlrpgRFdr~I~i 398 (582)
++|.|+|... -+.|+++. |+|..+.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeec
Confidence 5666655400 02344444 99999999
Q ss_pred cCCCHHHHHHHHHH----Hc-------CCCCCC---ccccHHHHHHh--CCCCcHHHHHHHHHHHHHHHH
Q 007989 399 DVPDIRGRTEILKV----HG-------SNKKFD---ADVSLDVIAMR--TPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~----~l-------~~~~l~---~dvdl~~lA~~--t~G~sgadL~~lv~eA~~~A~ 452 (582)
.+.+.++..+|+.. .+ ...... .+..++.|++. .+++-.+.|+.+++....-..
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 99999999998863 22 111211 11224556553 344556666666666554443
No 119
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=8.8e-14 Score=139.99 Aligned_cols=214 Identities=16% Similarity=0.199 Sum_probs=140.6
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
....+..+|++.+.... ....+.+..+... .+......++|+||+|||||+|++|+++++ +..+++++..
T Consensus 10 ~~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-----~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 10 VRLRDDATFANYYPGAN--AAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCCcccccccCcCCh--HHHHHHHHHHhhc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 33455678998873322 2233333322110 011123579999999999999999998754 6788999998
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++.... ..+.+..... .+|+|||++.+..+ ...+..+..+++.+ ..+...++++++..
T Consensus 83 ~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~~---~~~g~~ilits~~~ 140 (234)
T PRK05642 83 ELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNRL---RDSGRRLLLAASKS 140 (234)
T ss_pred HHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHHH---HhcCCEEEEeCCCC
Confidence 877531 1223333222 48999999988322 22344455555443 23445677777766
Q ss_pred cccc---cccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 379 ADIL---DSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 379 ~~~L---D~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
|..+ .+.|.+ ||. ..+.+..|+.++|.++++..+....+. ++..++.++.+.++ +.+.+.++++.-...+.
T Consensus 141 p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 141 PRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL 217 (234)
T ss_pred HHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 6543 688888 885 477889999999999999655443332 33347889999998 99999999998876554
Q ss_pred HhCCCccCHHHHHHHH
Q 007989 453 RRGKAAISSKEIDDSI 468 (582)
Q Consensus 453 r~~~~~It~~dl~~A~ 468 (582)
.. +..||..-+++++
T Consensus 218 ~~-~~~it~~~~~~~L 232 (234)
T PRK05642 218 QA-QRKLTIPFLKETL 232 (234)
T ss_pred Hc-CCcCCHHHHHHHh
Confidence 43 3568888777765
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.59 E-value=1.3e-14 Score=147.45 Aligned_cols=196 Identities=23% Similarity=0.261 Sum_probs=136.6
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------E
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------F 292 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------f 292 (582)
..|.+++.+.+|+|++|++.+.+.|...+..-..| ++|||||||||||+.|+++|+++++| +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 45788999999999999999999999988762222 69999999999999999999998763 2
Q ss_pred EEeechhHHHHhhhhhhhHHHHHHHHHhh------CCC----eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc
Q 007989 293 FSISGSEFVEMFVGVGASRVRDLFKKAKE------NAP----CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (582)
Q Consensus 293 i~is~s~~~~~~vG~~~~~vr~lF~~A~~------~~P----~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld 362 (582)
...+.++....-+ ....+. -|.+... ..| .|++|||.|.+. ..+.+.|...||
T Consensus 92 l~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTME 154 (346)
T ss_pred hhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHh
Confidence 2333443322111 111111 1222221 112 599999999992 345566777777
Q ss_pred CccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 007989 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (582)
Q Consensus 363 ~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~ 441 (582)
.+. ..+++|..||..+.|...+.+ |+. .+.|+..+.+.-...|+..+.+..+. ++..++.++..+.| +.++..
T Consensus 155 ~~s--~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ai 228 (346)
T KOG0989|consen 155 DFS--RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAI 228 (346)
T ss_pred ccc--cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 654 356788889999999999999 886 56676666665666666665554443 22237889999998 888888
Q ss_pred HHHHHHHH
Q 007989 442 NLLNEAAI 449 (582)
Q Consensus 442 ~lv~eA~~ 449 (582)
..++.+..
T Consensus 229 t~Lqsls~ 236 (346)
T KOG0989|consen 229 TTLQSLSL 236 (346)
T ss_pred HHHHHhhc
Confidence 88887765
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.6e-14 Score=155.63 Aligned_cols=213 Identities=19% Similarity=0.240 Sum_probs=146.2
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE--------
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------- 292 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------- 292 (582)
..++.++.+|+||+|++.+++.|...+.. .+.|+.+||+||||+|||++|+++|+.+.++-
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34566788999999999999988887752 24567899999999999999999999875421
Q ss_pred E-EeechhHHHH-------hhh---hhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 293 F-SISGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 293 i-~is~s~~~~~-------~vG---~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
. ..+|..+... +.| .+...++++.+... .....|++|||+|.+. ....+.|
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~L 141 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNSL 141 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHHH
Confidence 0 0111111100 011 11234444433332 2346799999999982 2245777
Q ss_pred HhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCc
Q 007989 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFS 436 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~s 436 (582)
+..++. ....+++|.+||.++.+.+++.+ |+. .++++.++.++..+.++..+++.+.. ++..++.++..+.| +
T Consensus 142 Lk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 887775 33467777778888899999998 875 78999999999888888766554432 33447888988887 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 437 gadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.+++.+.++...... + ..|+.+++.+++
T Consensus 216 lr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 216 LRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 888877777665432 2 348888776654
No 122
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.58 E-value=3.8e-15 Score=161.31 Aligned_cols=212 Identities=26% Similarity=0.391 Sum_probs=151.0
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s~~~~~ 303 (582)
...+.+++|.+.+.+++++.+..+...+. .||++|++||||.++||+|-. +.+.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 35788999999999999999998776653 799999999999999999955 44679999999866543
Q ss_pred -----hhhhh-------hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh--cCccC---
Q 007989 304 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFEG--- 366 (582)
Q Consensus 304 -----~vG~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l--d~~~~--- 366 (582)
++|.. ..+-...|+.|.++ .||||||..+ +-+.|..|...|++- ....+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 23311 12234567777665 9999999888 455666666666542 22222
Q ss_pred -CCCeEEEEecCc--cccccccccCCCCccc--eeeccCCCHHHHHHHH----HHHcC---------CCCCCccccHHHH
Q 007989 367 -NTGIIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHGS---------NKKFDADVSLDVI 428 (582)
Q Consensus 367 -~~~viVIaaTN~--~~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il----~~~l~---------~~~l~~dvdl~~l 428 (582)
+-+|.||+|||+ .+.+....+|...|.| ++.+.+|.+.+|.+-+ +++++ ...++++.--...
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~ 352 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALL 352 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 236999999986 3344444444444444 8899999999998833 33221 1234444444556
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007989 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 429 A~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 466 (582)
++.||| |.++|+|+++.++..+ ....|+.+++..
T Consensus 353 ~y~WPG-NVREL~N~ver~~il~---~~~~i~~~~l~~ 386 (464)
T COG2204 353 AYDWPG-NVRELENVVERAVILS---EGPEIEVEDLPL 386 (464)
T ss_pred hCCCCh-HHHHHHHHHHHHHhcC---Cccccchhhccc
Confidence 778999 9999999999999887 556677776653
No 123
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.58 E-value=2.8e-14 Score=142.20 Aligned_cols=199 Identities=22% Similarity=0.350 Sum_probs=127.7
Q ss_pred CCCcccccc-cc--hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeec
Q 007989 226 TGVTFDDVA-GV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (582)
Q Consensus 226 ~~~~f~dI~-G~--d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~ 297 (582)
+..||++.+ |- ..+....+.+.+ ++.. .-..++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 467899986 42 233333333332 2221 12259999999999999999998864 678999999
Q ss_pred hhHHHHhhhhhhh-HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 298 SEFVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 298 s~~~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
.+|...+...... .+.++.+..+ ...+|+||++|.+.. ....+..+..+++.+ ..+.+.+|+++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~---~~~~k~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRL---IESGKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHH---HHTTSEEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHH---HhhCCeEEEEeC
Confidence 9998876543322 2223323332 346899999999942 223344555555444 334556777776
Q ss_pred Ccccc---ccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 007989 377 NRADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (582)
Q Consensus 377 N~~~~---LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~ 450 (582)
..|.. +++.|.+ ||.. .+.+..||.+.|.+|++..+....+. ++.-.+.++...++ +.++|..+++.....
T Consensus 139 ~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 139 RPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp S-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 66664 4677777 8877 88999999999999999887665544 22337888999887 999999999988766
Q ss_pred H
Q 007989 451 A 451 (582)
Q Consensus 451 A 451 (582)
+
T Consensus 216 ~ 216 (219)
T PF00308_consen 216 A 216 (219)
T ss_dssp H
T ss_pred h
Confidence 5
No 124
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.58 E-value=7.7e-14 Score=158.09 Aligned_cols=216 Identities=18% Similarity=0.192 Sum_probs=146.9
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------C---CCEEEeechhH
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------G---VPFFSISGSEF 300 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~---~pfi~is~s~~ 300 (582)
+.|.|.++..++|..++...-. |..+...++|+|+||||||++++.+..++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 6788888888888877765321 11222335699999999999999997655 2 56789999543
Q ss_pred HHH----------hhhh-------hhhHHHHHHHHHh--hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh
Q 007989 301 VEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (582)
Q Consensus 301 ~~~----------~vG~-------~~~~vr~lF~~A~--~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l 361 (582)
... +.+. ....+..+|.... ....+||+|||||.|..+ .+..|..|+...
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~ 896 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWP 896 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHh
Confidence 321 1111 1234455666542 234579999999999432 245666666654
Q ss_pred cCccCCCCeEEEEecCc---cccccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCCCC-CCccccHHHHHH---hCC
Q 007989 362 DGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAM---RTP 433 (582)
Q Consensus 362 d~~~~~~~viVIaaTN~---~~~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvdl~~lA~---~t~ 433 (582)
. .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+..+.... .-++..++.+|+ ...
T Consensus 897 ~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 897 T--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred h--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 3 23457999999986 6678888888 6654 588899999999999998876532 112333666766 444
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 434 G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
| ..|..-.+|+.|+.. ++...|+.+|+.+|..++.
T Consensus 973 G-DARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 973 G-DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred C-HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 5 666666777777764 3456899999999997764
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=7.5e-14 Score=138.72 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=129.0
Q ss_pred cCCCCcccccccchH---HHHHHHHHHHHhcCchhhhhhcCCCC--ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 224 PNTGVTFDDVAGVDE---AKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~---~k~~L~e~v~~l~~p~~~~~~g~~~p--kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
..+..+|++++-.+. +...++++.+ .| + ..| +.++||||||||||+|++++++..+..++ +..
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHH---cc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chh
Confidence 445678998875553 3333333332 12 1 123 57999999999999999999998875332 211
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
... .+.+ . ...+|+|||||.+ . +..+..+++.+. .+.+.++|+++..
T Consensus 77 ~~~-----------~~~~----~-~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~ 123 (214)
T PRK06620 77 FFN-----------EEIL----E-KYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDK 123 (214)
T ss_pred hhc-----------hhHH----h-cCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCC
Confidence 111 0111 1 2358999999955 1 123334433332 2445788888766
Q ss_pred ccc--ccccccCCCCccc--eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 007989 379 ADI--LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (582)
Q Consensus 379 ~~~--LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r 453 (582)
|.. + ++|++ |+.. .+.+..||.+++.++++.++....+. ++..++.|+.+.+| +.+.+.++++.....+..
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 654 5 77888 8865 78999999999999998887644332 33347889999998 999999999987655544
Q ss_pred hCCCccCHHHHHHHH
Q 007989 454 RGKAAISSKEIDDSI 468 (582)
Q Consensus 454 ~~~~~It~~dl~~A~ 468 (582)
.+ ..||...+++++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 44 568988887765
No 126
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=2.6e-14 Score=165.66 Aligned_cols=220 Identities=20% Similarity=0.300 Sum_probs=145.0
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-----
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE----- 302 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~----- 302 (582)
+--+|..|++++|+.+.+.+...+... ......++|+||||+|||++++.+|+.++.+|+.++++...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 334569999999999988777543321 112236999999999999999999999999999988765432
Q ss_pred ----HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC-----cc--------
Q 007989 303 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE-------- 365 (582)
Q Consensus 303 ----~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~-----~~-------- 365 (582)
.|.|....++...+..+....| ||+|||||.+..... ++ ....|+..+|. |.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-----g~-----~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-----GD-----PASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-----CC-----HHHHHHHHhccccEEEEecccccccc
Confidence 3556666666666766654444 789999999964321 11 23445544442 11
Q ss_pred CCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC-----CCCC------ccccHHHHHH-hCC
Q 007989 366 GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----KKFD------ADVSLDVIAM-RTP 433 (582)
Q Consensus 366 ~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~-----~~l~------~dvdl~~lA~-~t~ 433 (582)
.-+++++|||+|.. .|+++|++ ||+ .|.+..++.++..+|.+.|+.. ..+. .+..+..++. .++
T Consensus 462 dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~ 537 (784)
T PRK10787 462 DLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred cCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCc
Confidence 12579999999987 49999999 996 8999999999999999988741 1111 1111344443 344
Q ss_pred CCcHHHHHHHHHHHHHHHHHh----CC---CccCHHHHHHHH
Q 007989 434 GFSGADLANLLNEAAILAGRR----GK---AAISSKEIDDSI 468 (582)
Q Consensus 434 G~sgadL~~lv~eA~~~A~r~----~~---~~It~~dl~~A~ 468 (582)
.+-.|.|+.+++..+..+..+ +. -.|+.+++.+.+
T Consensus 538 e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 538 EAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 555667766666554443322 11 245565555444
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.4e-14 Score=157.66 Aligned_cols=216 Identities=16% Similarity=0.238 Sum_probs=148.9
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE--------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 293 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi-------- 293 (582)
.+++++.+|+||+|++.+++.|+..+. ..+.|+++||+||||||||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 345678899999999999998888665 2356778999999999999999999999876310
Q ss_pred ---E-----eechhHHH-------Hhhh---hhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHH
Q 007989 294 ---S-----ISGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (582)
Q Consensus 294 ---~-----is~s~~~~-------~~vG---~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~ 351 (582)
. -+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~ 141 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------T 141 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------H
Confidence 0 01111111 0111 123456666655522 234699999999982 2
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHH
Q 007989 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (582)
Q Consensus 352 ~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~ 430 (582)
...+.|+..++.. ....++|.+|+.++.|-+.+.+ |. ..+++..++.++-...++..++..... ++..++.++.
T Consensus 142 ~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788877743 3345666666777888888888 76 488999999988888777766543322 3344788888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A~r-~~~~~It~~dl~~A~ 468 (582)
.+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 217 ~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 8887 888888888877666521 224578888777655
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=2e-13 Score=139.72 Aligned_cols=187 Identities=25% Similarity=0.294 Sum_probs=120.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh------HHHHhhhhhhhHHHH--------------------HHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRVRD--------------------LFKKA 319 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~------~~~~~vG~~~~~vr~--------------------lF~~A 319 (582)
.+||+||||||||++|+++|...|.||+.++|.. +...+.+.....+.+ .+-.|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 7999999999999999999999999999998754 222222111111111 11122
Q ss_pred hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc----C-------ccCCCCeEEEEecCccc-----ccc
Q 007989 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G-------FEGNTGIIVIAATNRAD-----ILD 383 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld----~-------~~~~~~viVIaaTN~~~-----~LD 383 (582)
.. .+.+|+|||||.+ +.+.+..|..+|++-. + +..+.++.||+|+|... .++
T Consensus 103 ~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 103 VR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 22 2359999999997 4555666666665311 0 01234688999999753 568
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcccc--HHHHHHh------CCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMR------TPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd--l~~lA~~------t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
++|++ || ..+.++.|+.++..+|++.+.. ..++.- +-.++.. ....+.+ ..+.-|...+....
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~~r---~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSGLR---ASLMIAEVATQQDI 241 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCcHH---HHHHHHHHHHHcCC
Confidence 89999 88 5899999999999999998752 222210 1111111 1123344 44444444445556
Q ss_pred CCccCHHHHHHHHHHHHc
Q 007989 456 KAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 456 ~~~It~~dl~~A~~~v~~ 473 (582)
+..++.+||.+.+..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCCcHHHHHHHHHHhc
Confidence 888999999998877764
No 129
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.56 E-value=2.7e-14 Score=150.43 Aligned_cols=217 Identities=24% Similarity=0.412 Sum_probs=136.5
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEee--
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS-- 296 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is-- 296 (582)
.+.+|++|+|++++++.+.-.+. ++. -.++||+|+||||||++|+++|+-+ ++|+-..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999997775321 111 1379999999999999999999987 33322111
Q ss_pred c-hhH---------------HHHhhhhhhhHH------------------HHHHHHHhhCCCeEEEEeCCCcccccCCCC
Q 007989 297 G-SEF---------------VEMFVGVGASRV------------------RDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (582)
Q Consensus 297 ~-s~~---------------~~~~vG~~~~~v------------------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 342 (582)
+ .++ .....+.++.++ ...+..| ...+|||||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-------
Confidence 0 001 101011111111 0111111 1249999999998
Q ss_pred CCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEEecCccc-cccccccCCCCccceeeccCCCH-HHHHHHHHH
Q 007989 343 IGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKV 412 (582)
Q Consensus 343 ~~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~Pd~-~eR~~Il~~ 412 (582)
+...+..+.+.+.+- +|. .....+++|+++|..+ .++++|+. ||...+.++.|.. ++|.+|++.
T Consensus 141 ----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 141 ----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 344444555544321 111 1235789999999755 58899999 9999999988876 889999987
Q ss_pred HcCCCC----C------C--------------------cccc---HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007989 413 HGSNKK----F------D--------------------ADVS---LDVIAMR--TPGFSGADLANLLNEAAILAGRRGKA 457 (582)
Q Consensus 413 ~l~~~~----l------~--------------------~dvd---l~~lA~~--t~G~sgadL~~lv~eA~~~A~r~~~~ 457 (582)
...... + . ++.. +..++.. ..| .-+++. +++.|...|..+|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcCCC
Confidence 432110 0 0 0001 1222222 334 556666 999999999999999
Q ss_pred ccCHHHHHHHHHHHH
Q 007989 458 AISSKEIDDSIDRIV 472 (582)
Q Consensus 458 ~It~~dl~~A~~~v~ 472 (582)
.|+.+|++.+..-++
T Consensus 293 ~V~~~Di~~~~~~vl 307 (334)
T PRK13407 293 AVGRSHLRSVATMAL 307 (334)
T ss_pred eeCHHHHHHHHHHhh
Confidence 999999988875554
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1e-13 Score=157.04 Aligned_cols=208 Identities=18% Similarity=0.288 Sum_probs=145.0
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE----e--
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----I-- 295 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~----i-- 295 (582)
.+++++.+|++++|++.+++.|...+..- +.+.++||+||||+|||++|+++|+.+++.... -
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 45667789999999999999998888642 245589999999999999999999998762110 0
Q ss_pred -echh---HH----------HHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 296 -SGSE---FV----------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 296 -s~s~---~~----------~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
.|.. +. +.....+...+|++++.+.. ....|++|||+|.+. ....+.|
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naL 141 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNAL 141 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHH
Confidence 1111 10 00112344578888877643 223699999999982 2356788
Q ss_pred HhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC--CCCccccHHHHHHhCCCC
Q 007989 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGF 435 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~lA~~t~G~ 435 (582)
|..++. ....+++|.+|+.++.+-+.+++ |+. .++|..++.++-...++..+.+. .++++ .+..++..+.|
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~G- 214 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQG- 214 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCC-
Confidence 888874 34567777778888888899988 874 68888888887777666655443 33333 37788888888
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007989 436 SGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 436 sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 466 (582)
+.+++.++++....+. ..|+.+++.+
T Consensus 215 ~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 215 GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 7788888887654432 2466666554
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.56 E-value=5.1e-14 Score=154.54 Aligned_cols=209 Identities=23% Similarity=0.340 Sum_probs=159.9
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEe
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~i 295 (582)
.++++.+|+|++|++.+...|.+.+..- +.+++.||+||.|||||++||.+|+.+++. +..+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4567789999999999999999988743 345589999999999999999999988764 1111
Q ss_pred -echhHH--------HH--hhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh
Q 007989 296 -SGSEFV--------EM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (582)
Q Consensus 296 -s~s~~~--------~~--~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ 360 (582)
+|.++. +. -...+-+.+|++.+.+.- ....|.+|||+|.| ..+..|.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 111111 10 112245678888887742 33469999999998 45688999999
Q ss_pred hcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcc-ccHHHHHHhCCCCcHHH
Q 007989 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGAD 439 (582)
Q Consensus 361 ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgad 439 (582)
++ ++...|++|.||..++.+++.+++ |+. ++.+..-+.++-...++..+.+..+.-+ ..+..+|+...| |.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 98 566789999999999999999999 885 6788888888888888888877666533 347889999999 9999
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007989 440 LANLLNEAAILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 440 L~~lv~eA~~~A~r~~~~~It~~dl~~ 466 (582)
..++++.|..... ..|+.+++.+
T Consensus 217 alslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHHH
Confidence 9999999987652 4566555543
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.9e-13 Score=154.64 Aligned_cols=212 Identities=19% Similarity=0.265 Sum_probs=145.1
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE---ee--
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS-- 296 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~---is-- 296 (582)
.+++++.+|+||+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+++..-. ..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4667889999999999999998887763 2345678999999999999999999987642210 00
Q ss_pred -c---hhHHHH----h------hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 297 -G---SEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 297 -~---s~~~~~----~------vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
| ..+... + ...+...++++.+.+.. ....|++|||+|.+. ...++.||
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 1 111100 0 01122345555554432 234699999999982 23567778
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sg 437 (582)
..++... ...++|.+++..+.+.+.+.+ |+. .+.|..++..+...+++..+....+. ++..+..++..+.| +.
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7777532 456666667777778888887 775 68899999998888888776554432 23347788888887 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+++.+.++....+ +...|+.+++++.+
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 8888888876543 23468888876543
No 133
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-14 Score=154.50 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=139.8
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s~~~~~ 303 (582)
...+.+|+|.+.+..++.+.++.....+. .|||.|++||||..+||+|-. +.+.||+++||+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56889999999999999999998766653 899999999999999999966 45789999999988764
Q ss_pred h-----hhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh--cCccCC--
Q 007989 304 F-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFEGN-- 367 (582)
Q Consensus 304 ~-----vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l--d~~~~~-- 367 (582)
. +|.-. ..-+.-|+.|.++ .||+|||..+ +-+.|..+...|++- +...++
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 3 22211 1123456666554 8999999888 556677777777653 333222
Q ss_pred --CCeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHHHH----HHHc----C-----CCCCCccccHHHH
Q 007989 368 --TGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHG----S-----NKKFDADVSLDVI 428 (582)
Q Consensus 368 --~~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il----~~~l----~-----~~~l~~dvdl~~l 428 (582)
-+|.||||||+- +.+-..-+|...|.| ++.+.+|+..+|.+-+ ++++ + ...++++.--...
T Consensus 355 ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 355 IKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred eEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 269999999971 112222222223333 7788899999997722 1222 1 2234444433445
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 007989 429 AMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 429 A~~t~G~sgadL~~lv~eA~~~A 451 (582)
...|+| |.++|+|+++.|+..|
T Consensus 435 ~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCC-cHHHHHHHHHHHHHHh
Confidence 567999 9999999999999988
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.53 E-value=2.5e-13 Score=145.39 Aligned_cols=176 Identities=30% Similarity=0.448 Sum_probs=128.0
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhhc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhh-h
Q 007989 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g-~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG-~ 307 (582)
.|+|++++|+.+...+.. ++......... -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999877642 11111000011 113689999999999999999999999999999999999886 5777 4
Q ss_pred hhhHHHHHHHHHh-------------------------------------------------------------------
Q 007989 308 GASRVRDLFKKAK------------------------------------------------------------------- 320 (582)
Q Consensus 308 ~~~~vr~lF~~A~------------------------------------------------------------------- 320 (582)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4566666666661
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 007989 321 ---E--------------------------------------------------------------------NAPCIVFV 329 (582)
Q Consensus 321 ---~--------------------------------------------------------------------~~P~ILfI 329 (582)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc--------cCCCCeEEEEecC----ccccccccccCCCCccceee
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--------EGNTGIIVIAATN----RADILDSALLRPGRFDRQVT 397 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~--------~~~~~viVIaaTN----~~~~LD~aLlrpgRFdr~I~ 397 (582)
||||.++.+.+. ++.+-..+.+...||..++|- -...++++||+-. .|+.|-|.|.- ||..++.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876533 233444556777888888773 2345788888763 36667788866 9999999
Q ss_pred ccCCCHHHHHHHHH
Q 007989 398 VDVPDIRGRTEILK 411 (582)
Q Consensus 398 i~~Pd~~eR~~Il~ 411 (582)
+..++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999888873
No 135
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.53 E-value=3.7e-14 Score=157.85 Aligned_cols=213 Identities=22% Similarity=0.337 Sum_probs=138.9
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh-----------cCCCEEEee
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 296 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e-----------~~~pfi~is 296 (582)
.+|+|++|.+.+.+.+.+.+..+... +.+|||+|++||||+++|+++-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57999999999999999988765443 237999999999999999999765 577999999
Q ss_pred chhHHHH-----hhhh------hh--hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 297 GSEFVEM-----FVGV------GA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 297 ~s~~~~~-----~vG~------~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
|+.+.+. +.|. ++ ..-..+|+.|..+ .||||||+.+ +...+..|..+|++-.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 9876542 2221 11 1122466666544 8999999999 55566666666654221
Q ss_pred --cc----CCCCeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHHH----HHHHcCC------CCCCccc
Q 007989 364 --FE----GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI----LKVHGSN------KKFDADV 423 (582)
Q Consensus 364 --~~----~~~~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~I----l~~~l~~------~~l~~dv 423 (582)
.. ...++.+|++||.. +.+....+|+..|.+ .+.+.+|++.+|.+- +++++++ ..+.+++
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 431 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL 431 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 11 12357899999863 122222222222222 678899999999872 2333322 2233322
Q ss_pred c-------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 424 S-------LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 424 d-------l~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
- -......||| |.++|+|++++++..+.......++.+++.
T Consensus 432 ~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 432 RQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 1 1233556999 999999999999987643323456666653
No 136
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.52 E-value=2.8e-14 Score=158.71 Aligned_cols=216 Identities=22% Similarity=0.295 Sum_probs=143.1
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~ 303 (582)
..+|+|++|.+++.+.+.+.+..+... +.+|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999999988765443 237999999999999999999764 4679999999876542
Q ss_pred -----hhhhh------h--hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--cc---
Q 007989 304 -----FVGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FE--- 365 (582)
Q Consensus 304 -----~vG~~------~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~~--- 365 (582)
+.|.. + ..-..+|+.|..+ .||||||+.+ +...+..|..+|++-.- ..
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 22211 0 1123466666444 8999999999 55666666666654221 11
Q ss_pred -CCCCeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHHHH----HHHcCC------CCCCccccHH----
Q 007989 366 -GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHGSN------KKFDADVSLD---- 426 (582)
Q Consensus 366 -~~~~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il----~~~l~~------~~l~~dvdl~---- 426 (582)
...++.+|++||.. +.+....+|+..|.+ .+.+.+|++.+|.+-+ .+++.+ .+++++..-.
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~ 423 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGV 423 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHH
Confidence 12256899999763 223333333222322 5788899999998732 333322 2233333222
Q ss_pred ---HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 427 ---VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 427 ---~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.....||| |.++|++++++++..+.......|+.+++...
T Consensus 424 ~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 424 ADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 44678999 99999999999998764333457888876543
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.52 E-value=1.1e-13 Score=146.23 Aligned_cols=225 Identities=21% Similarity=0.277 Sum_probs=142.4
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEee-
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS- 296 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is- 296 (582)
.....|++|+|++++|..|...+. +|. ..|+||.||+|||||++||+++.-+ +.||..-.
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 346789999999999997775543 331 2489999999999999999997754 23443000
Q ss_pred -----chhHHHH-------------------hhhhhhhHH------HHHHHHHh---------hCCCeEEEEeCCCcccc
Q 007989 297 -----GSEFVEM-------------------FVGVGASRV------RDLFKKAK---------ENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 297 -----~s~~~~~-------------------~vG~~~~~v------r~lF~~A~---------~~~P~ILfIDEID~l~~ 337 (582)
|++.... ..+.+..++ ...|.... +....+|||||++.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 0011100 011122221 11111111 111359999999998
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEEecCccc-cccccccCCCCccceeeccCCC-HHHHH
Q 007989 338 QRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IRGRT 407 (582)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~Pd-~~eR~ 407 (582)
+...+..+.+.+.+- +|. .....+++|++.|..+ .+.++|+. ||..++.+..|+ .+.|.
T Consensus 157 ---------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 157 ---------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 344444444444321 111 1234789999989765 68999999 999999999997 58999
Q ss_pred HHHHHHcCCC--C-----------------------------CCcccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 408 EILKVHGSNK--K-----------------------------FDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 408 ~Il~~~l~~~--~-----------------------------l~~dvd--l~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
+|++...... + +++++- +..++..+.--+.+--..+++.|...|+-+
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 305 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFE 305 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHc
Confidence 9998753211 0 101000 222333333235666668899999999999
Q ss_pred CCCccCHHHHHHHHHHHHcC
Q 007989 455 GKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 455 ~~~~It~~dl~~A~~~v~~g 474 (582)
|+..|+.+|+..+..-++..
T Consensus 306 GR~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 306 GRTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 138
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=3.1e-13 Score=144.56 Aligned_cols=175 Identities=29% Similarity=0.447 Sum_probs=125.0
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhh-cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhh-h
Q 007989 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~-l~~p~~~~~~-g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG-~ 307 (582)
-|+|++++|+.+...+.. .+.......+ .-..|+++||+||||||||++|+++|..++.||+.+++.++.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999998776653 1111110111 1235789999999999999999999999999999999988774 5666 3
Q ss_pred hhhHHHHHHHHHh-------------------------------------------------------------------
Q 007989 308 GASRVRDLFKKAK------------------------------------------------------------------- 320 (582)
Q Consensus 308 ~~~~vr~lF~~A~------------------------------------------------------------------- 320 (582)
.++.++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 4455555555540
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 007989 321 ------------------------------------------------------------------------ENAPCIVF 328 (582)
Q Consensus 321 ------------------------------------------------------------------------~~~P~ILf 328 (582)
.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----ccccccccccCCCCcccee
Q 007989 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQV 396 (582)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~--------~~~~viVIaaTN----~~~~LD~aLlrpgRFdr~I 396 (582)
|||||.++.+... .+.+-..+.+...||..++|-. ...++++||+.. .|+.|=|.|.- ||..++
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999876522 2233445557778888887732 235788888764 36666677765 999999
Q ss_pred eccCCCHHHHHHHH
Q 007989 397 TVDVPDIRGRTEIL 410 (582)
Q Consensus 397 ~i~~Pd~~eR~~Il 410 (582)
.+..++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999988887
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.1e-13 Score=151.36 Aligned_cols=212 Identities=19% Similarity=0.296 Sum_probs=146.8
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 294 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~------- 294 (582)
.+++++.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|+.+.+.-..
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4567788999999999999988887752 3457789999999999999999999987642110
Q ss_pred --eechhHHHH-------hhh---hhhhHHHHHHHHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 295 --ISGSEFVEM-------FVG---VGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 295 --is~s~~~~~-------~vG---~~~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
-+|..+.+. +-+ .+...++++.+.+... ..-|++|||+|.+. ....+.|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naLL 142 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAFL 142 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHHH
Confidence 012222110 001 1234567777666432 23599999999982 23567777
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHHhCCCCcH
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSG 437 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sg 437 (582)
..|+.. ....++|.+|+.+..+-+.|++ |+. .++|..++.++-...++..+....+.- +..+..|+..+.| +.
T Consensus 143 K~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777743 3456677777777888899998 774 799999999988888887766555442 2347888888877 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 438 adL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+++.+.++....++ +.. |+.+++.+.+
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 88888887766554 322 6666655443
No 140
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.51 E-value=3.9e-13 Score=145.03 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=131.3
Q ss_pred ccccchHHHHHHHHHHH----HhcCc-hhhhhhcCCC-CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hh
Q 007989 232 DVAGVDEAKQDFMEVVE----FLKKP-ERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~----~l~~p-~~~~~~g~~~-pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~ 304 (582)
-|+|++++++.+...+. .+... ..-...+... +.++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 47999999999987662 22220 0000011111 358999999999999999999999999999999887753 46
Q ss_pred hhhhh-hHHHHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCC
Q 007989 305 VGVGA-SRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNT 368 (582)
Q Consensus 305 vG~~~-~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~-----------~~~ 368 (582)
+|... ..+..++..+ ....++||||||||.+.+++.......+-..+.+.+.||..|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 66542 2333333322 2345789999999999765432111111111234455555555432 123
Q ss_pred CeEEEEecCcc---------------------------c-----------------------cccccccCCCCccceeec
Q 007989 369 GIIVIAATNRA---------------------------D-----------------------ILDSALLRPGRFDRQVTV 398 (582)
Q Consensus 369 ~viVIaaTN~~---------------------------~-----------------------~LD~aLlrpgRFdr~I~i 398 (582)
+.++|.|+|-. + .+.|+++. |+|.++.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46777777750 0 02355554 89988999
Q ss_pred cCCCHHHHHHHHHHH----cC-------CCCCC---ccccHHHHHHh--CCCCcHHHHHHHHHHHHHHHH
Q 007989 399 DVPDIRGRTEILKVH----GS-------NKKFD---ADVSLDVIAMR--TPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~~----l~-------~~~l~---~dvdl~~lA~~--t~G~sgadL~~lv~eA~~~A~ 452 (582)
.+.+.++..+|+... ++ ..... ++..++.|+.. .+.+-.+.|+.+++....-+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 999999999988652 11 11111 11224555554 344556677776666655443
No 141
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=7e-14 Score=149.17 Aligned_cols=197 Identities=26% Similarity=0.411 Sum_probs=139.2
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH---h-cCCCEEEeechhHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFVE 302 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~---e-~~~pfi~is~s~~~~ 302 (582)
...+++++|.+...++++|.+..+... ..+||++|++||||+++|+.+.. . .+.||+.+||+.+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 457999999999999999988763222 34799999999999999999943 3 478999999998876
Q ss_pred Hh-------------hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--c---
Q 007989 303 MF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F--- 364 (582)
Q Consensus 303 ~~-------------vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~--- 364 (582)
.. .| ....-..+|+.|.++ +||+|||+.+ ..+.+..+..+|++-.- .
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 32 22 233445678888666 9999999998 56677777777776321 1
Q ss_pred -cCCCCeEEEEecCc--cccccc--cccCCCCccceeeccCCCHHHHHHH--------HHHHcCCCCCC-----ccccHH
Q 007989 365 -EGNTGIIVIAATNR--ADILDS--ALLRPGRFDRQVTVDVPDIRGRTEI--------LKVHGSNKKFD-----ADVSLD 426 (582)
Q Consensus 365 -~~~~~viVIaaTN~--~~~LD~--aLlrpgRFdr~I~i~~Pd~~eR~~I--------l~~~l~~~~l~-----~dvdl~ 426 (582)
....+|.+|+|||- ++.+-. .+.+ |. -.+.|.+|+.++|.+- ++.++++.... ++.-..
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 12347999999974 222322 3333 22 1567888999998662 22333333322 233345
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 427 VIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
.++..|+| |.++|+|+|..++..+.
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 66788999 99999999999998884
No 142
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.50 E-value=1.4e-13 Score=145.25 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=126.9
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH-----h
Q 007989 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-----F 304 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~-----~ 304 (582)
++|.+.+.+.+.+.+..+... ..+|||+|++||||+++|+++... .+.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 578888888888888776543 337999999999999999999654 4579999999865432 1
Q ss_pred hhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----cCCCCeE
Q 007989 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 371 (582)
Q Consensus 305 vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~----~~~~~vi 371 (582)
+|... .....+|+.|. ..+|||||||.+ +.+.+..+..+++.-. .. ....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 22110 11123455554 359999999999 5556666666665321 00 1124689
Q ss_pred EEEecCcc--c-----cccccccCCCCccceeeccCCCHHHHHHHH----HHHc----C----C--CCCCccccHHHHHH
Q 007989 372 VIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHG----S----N--KKFDADVSLDVIAM 430 (582)
Q Consensus 372 VIaaTN~~--~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il----~~~l----~----~--~~l~~dvdl~~lA~ 430 (582)
+|++||.. + .+.+.|+. ||. .+.+.+|++.+|.+-+ ++++ . . ..+++++--.....
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 99999863 1 22334444 443 5688899999987733 2222 1 1 23455544455567
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A 451 (582)
.|+| |.++|+++++.|+..+
T Consensus 214 ~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred CCCc-hHHHHHHHHHHHHHhC
Confidence 8999 9999999999998776
No 143
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.50 E-value=7.9e-13 Score=132.23 Aligned_cols=195 Identities=22% Similarity=0.371 Sum_probs=133.3
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
+.....+.+++++|++++|+.|.+....+-. ..+..++||+|++|||||+++||+..+. |..++.++..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3445678999999999999999987765433 2456799999999999999999998865 7888888877
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc--cCCCCeEEEEe
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAA 375 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~--~~~~~viVIaa 375 (582)
++.. +.++++..+. ..+-|||+|++- + ...+. ....|-..|||- ..+.+|++.||
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F---------e~~d~---~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS-F---------EEGDT---EYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC-C---------CCCcH---HHHHHHHHhcCccccCCCcEEEEEe
Confidence 7654 4455555543 345799999863 2 11222 234444445543 33568999999
Q ss_pred cCcccccccccc---------------------CCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcc-ccH----HHHH
Q 007989 376 TNRADILDSALL---------------------RPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSL----DVIA 429 (582)
Q Consensus 376 TN~~~~LD~aLl---------------------rpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl----~~lA 429 (582)
+|+-+.+.+... -..||...+.|..||.++..+|++.++....+.-+ ..+ ...|
T Consensus 148 SNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa 227 (249)
T PF05673_consen 148 SNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWA 227 (249)
T ss_pred cchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 998543322111 12399999999999999999999999976655433 122 2233
Q ss_pred HhCCCCcHHHHHHHHHH
Q 007989 430 MRTPGFSGADLANLLNE 446 (582)
Q Consensus 430 ~~t~G~sgadL~~lv~e 446 (582)
..-.|.||+-..+.++.
T Consensus 228 ~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 228 LRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHcCCCCHHHHHHHHHH
Confidence 34445666665555543
No 144
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.50 E-value=1.7e-13 Score=144.47 Aligned_cols=195 Identities=23% Similarity=0.297 Sum_probs=130.3
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH--
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~-- 303 (582)
-+++++|.+...+.+.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4778999999999999988876533 3479999999999999999996543 579999999876432
Q ss_pred ---hhhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc------cCC
Q 007989 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGN 367 (582)
Q Consensus 304 ---~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~------~~~ 367 (582)
++|... ......|+.+.. .+|||||+|.+ +...+..+..+++.-... ..+
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCC---CeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 222110 111234555443 48999999999 455666666666532100 012
Q ss_pred CCeEEEEecCcc-------ccccccccCCCCccceeeccCCCHHHHHHH----HHHHc----CC------CCCCccccHH
Q 007989 368 TGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHG----SN------KKFDADVSLD 426 (582)
Q Consensus 368 ~~viVIaaTN~~-------~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I----l~~~l----~~------~~l~~dvdl~ 426 (582)
.++.||++|+.. ..+.+.|+. ||. .+.+.+|++.+|.+- +++++ ++ ..++++..-.
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 358899988762 123344444 553 467888999998772 22322 12 1244444444
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 427 VIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
.....|+| |.++|+++++.|+..+
T Consensus 217 L~~y~WPG-NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPG-NIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHhc
Confidence 55678999 9999999999998765
No 145
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=1.4e-12 Score=148.17 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=138.6
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (582)
.++.+|++++|++++.+.+.+.+. . ..|.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999999987655442 1 124579999999999999999997654 468999
Q ss_pred eechhHH-------HHhhhhhhh----HHHHHHHH----------HhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 295 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 295 is~s~~~-------~~~vG~~~~----~vr~lF~~----------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++|..+. ..+.+.... ..+..++. .......+|||||++.+ +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987642 111221110 01111110 00112459999999998 4455555
Q ss_pred HHHHHhhhc------C-----------------ccCCCCeEEEEec-CccccccccccCCCCccceeeccCCCHHHHHHH
Q 007989 354 LNQLLTEMD------G-----------------FEGNTGIIVIAAT-NRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (582)
Q Consensus 354 L~~LL~~ld------~-----------------~~~~~~viVIaaT-N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I 409 (582)
+..+++.-. . -.....+++|++| +.++.++++|++ ||. .+.+++++.++..+|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 555554311 0 0112346676655 568889999988 887 678889999999999
Q ss_pred HHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHH
Q 007989 410 LKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR--------GKAAISSKEIDDSIDR 470 (582)
Q Consensus 410 l~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~--------~~~~It~~dl~~A~~~ 470 (582)
++..+...... .+..++.|+..+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99987764422 2223555655443 4566666666665554222 2347899999988753
No 146
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.49 E-value=1.1e-13 Score=155.26 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=137.7
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~ 301 (582)
.+..+|++++|.+.+.+++.+.+..+... ...|||+|++||||+++|+++.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 34568999999999999999988876543 3379999999999999999998764 6799999998764
Q ss_pred HHh-----hhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--ccC-
Q 007989 302 EMF-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG- 366 (582)
Q Consensus 302 ~~~-----vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~~~- 366 (582)
+.. +|... ......|+.+. ..+|||||||.+ +.+.+..+.+++..-.- ...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCC
Confidence 422 12110 00112244443 358999999999 45556666666653210 001
Q ss_pred ---CCCeEEEEecCcc--ccccccccCCC---CccceeeccCCCHHHHHH----HHHHHcC--------CCCCCccccHH
Q 007989 367 ---NTGIIVIAATNRA--DILDSALLRPG---RFDRQVTVDVPDIRGRTE----ILKVHGS--------NKKFDADVSLD 426 (582)
Q Consensus 367 ---~~~viVIaaTN~~--~~LD~aLlrpg---RFdr~I~i~~Pd~~eR~~----Il~~~l~--------~~~l~~dvdl~ 426 (582)
..++.+|++|+.. +.+....+++. |+. .+.+.+|++.+|.+ ++++++. ...++++.--.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1258899988753 11222222211 332 56778888888765 2233322 12344444333
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007989 427 VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 427 ~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 466 (582)
.....|+| |.++|+++++.|+..+ ....|+.+|+..
T Consensus 405 L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 405 LMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred HHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 44566999 9999999999998765 456788888753
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.49 E-value=1.4e-12 Score=130.67 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=134.9
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
....+..+|++.+.-+.-.. ....+..+..+ ....++|+||+|+|||+|+++++...++. +++..+|.
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~-a~~~l~~~~~~---------~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~ 79 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRA-AVSLVDHWPNW---------PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG 79 (226)
T ss_pred CCCCCCCChhceeecCchHH-HHHHHHhcccC---------CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc
Confidence 33455678999985332111 22222221111 12249999999999999999999887654 45554444
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
..+. ..... .+|+|||+|.+.. . +..+..+++.+. .....+||+++..|..
T Consensus 80 ~~~~-----------~~~~~---~~l~iDDi~~~~~--------~----~~~lf~l~n~~~---~~g~~ilits~~~p~~ 130 (226)
T PRK09087 80 SDAA-----------NAAAE---GPVLIEDIDAGGF--------D----ETGLFHLINSVR---QAGTSLLMTSRLWPSS 130 (226)
T ss_pred hHHH-----------Hhhhc---CeEEEECCCCCCC--------C----HHHHHHHHHHHH---hCCCeEEEECCCChHH
Confidence 3322 11112 3788999998721 1 122334443332 2345677777765553
Q ss_pred c---cccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 382 L---DSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 382 L---D~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
+ .+.|++ ||. ..+++..|+.++|.++++.++....+. ++..++.|+.+.+| +.+.+..+++.....+...+
T Consensus 131 ~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~ 207 (226)
T PRK09087 131 WNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK 207 (226)
T ss_pred hccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC
Confidence 3 677888 886 489999999999999999988765443 33347889999998 99999998888877776655
Q ss_pred CCccCHHHHHHHHHHH
Q 007989 456 KAAISSKEIDDSIDRI 471 (582)
Q Consensus 456 ~~~It~~dl~~A~~~v 471 (582)
..||...+++++..+
T Consensus 208 -~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 -SRITRALAAEVLNEM 222 (226)
T ss_pred -CCCCHHHHHHHHHhh
Confidence 458999999888754
No 148
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.48 E-value=1.1e-12 Score=135.71 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=94.1
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc------------cccccccccCCCC
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~------------~~~LD~aLlrpgR 391 (582)
|.||||||+|.| +-+.-..+|.-++. .-.-++|.|||+ |+-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999888 44555555555541 112377778886 5556666666 5
Q ss_pred ccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 392 Fdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
+ ..|...+.+.++.++|++..++...+.- +..++.|+....--|.+=.-+++.-|...|.++++..|..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 5 2677788899999999999887665442 2337777777666677777788899999999999999999999999764
Q ss_pred H
Q 007989 471 I 471 (582)
Q Consensus 471 v 471 (582)
.
T Consensus 432 F 432 (450)
T COG1224 432 F 432 (450)
T ss_pred H
Confidence 4
No 149
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=7.6e-13 Score=152.67 Aligned_cols=168 Identities=18% Similarity=0.270 Sum_probs=115.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-----Hhhh
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFVG 306 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-----~~vG 306 (582)
.|+|++++++.+.+.+...+..-. -..++...+||+||||||||.+|+++|..++.||+.++|+++.+ .++|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~---~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc---CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 489999999999998876432100 00122236999999999999999999999999999999998854 3444
Q ss_pred hhhhHH-----HHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh---cC--c-cCCCCeEEEEe
Q 007989 307 VGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DG--F-EGNTGIIVIAA 375 (582)
Q Consensus 307 ~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l---d~--~-~~~~~viVIaa 375 (582)
.....+ ..+.+..+....|||||||||.+ +.+.+..+.+++++- |. . ..-.++++|+|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 321111 12333344555699999999998 344444444444421 00 0 01136789999
Q ss_pred cCcc-------------------------ccccccccCCCCccceeeccCCCHHHHHHHHHHHcC
Q 007989 376 TNRA-------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (582)
Q Consensus 376 TN~~-------------------------~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~ 415 (582)
||.. ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 9932 124577777 9999999999999999999876653
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.7e-12 Score=138.57 Aligned_cols=217 Identities=20% Similarity=0.331 Sum_probs=154.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----EEEeechhHHHHh-
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVEMF- 304 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-----fi~is~s~~~~~~- 304 (582)
+.+.+.++..+.+..++...-+ ...|.++++|||||||||.+++.++.++.-+ +++++|....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3399999999999887655322 2345679999999999999999999987443 8999997665422
Q ss_pred --------------hhhhhh-HHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 007989 305 --------------VGVGAS-RVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (582)
Q Consensus 305 --------------vG~~~~-~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~ 368 (582)
.|.... ....+++... ....-||++||+|.|..+.+ ..+..|+...+.. ..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ce
Confidence 011111 1222232222 34567999999999964431 5777777765544 56
Q ss_pred CeEEEEecCcc---ccccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCCC----CCCcccc--HHHHHHhCCCCcHH
Q 007989 369 GIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNK----KFDADVS--LDVIAMRTPGFSGA 438 (582)
Q Consensus 369 ~viVIaaTN~~---~~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~~----~l~~dvd--l~~lA~~t~G~sga 438 (582)
++.+|+.+|.. +.+|+.+.+ +|.. .|.|++.+.+|..+|++...... .+++++- ...++....| +.+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 78899999874 578898888 5443 68999999999999998876532 2333321 2333455556 777
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 439 DLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
-.-.+|+.|+..|.+++...++.+++..|.+.+
T Consensus 233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 778999999999999999999999999995543
No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.48 E-value=1.6e-13 Score=153.24 Aligned_cols=209 Identities=22% Similarity=0.357 Sum_probs=137.9
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
...+|++++|.+...+++.+.+..+... ...|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4579999999999999888887765432 2369999999999999999985543 57999999987654
Q ss_pred H-----hhhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Cc----
Q 007989 303 M-----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF---- 364 (582)
Q Consensus 303 ~-----~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~---- 364 (582)
. ++|... .....+|+.|.. ..|||||||.+ +.+.+..+.++++.-. ..
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 2 223211 112345666544 48999999999 4556666666665421 11
Q ss_pred cCCCCeEEEEecCcc--ccccccccCCC---CccceeeccCCCHHHHHHHH--------HHHcCCC-----CCCccccHH
Q 007989 365 EGNTGIIVIAATNRA--DILDSALLRPG---RFDRQVTVDVPDIRGRTEIL--------KVHGSNK-----KFDADVSLD 426 (582)
Q Consensus 365 ~~~~~viVIaaTN~~--~~LD~aLlrpg---RFdr~I~i~~Pd~~eR~~Il--------~~~l~~~-----~l~~dvdl~ 426 (582)
....++.||++|+.+ +.+....+++. |+. .+.+.+|++.+|.+-+ +.+..+. .+++++ +.
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a-~~ 412 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL-NT 412 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH-HH
Confidence 112357899988753 22222223322 443 5788899999988522 2222221 344444 34
Q ss_pred HH-HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007989 427 VI-AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (582)
Q Consensus 427 ~l-A~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 464 (582)
.| .+.|+| |.++|++++..|+..+ ....|+.+|+
T Consensus 413 ~L~~y~WPG-NvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 413 VLTRYGWPG-NVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 44 455999 9999999999998766 4457888875
No 152
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=6.4e-13 Score=140.32 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=138.9
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEE--------
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 293 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi-------- 293 (582)
.|..|+|++++|..|.-.+- +|. ..+++|.|+||+|||++++++++-. ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58999999999987654332 221 2379999999999999999999865 33332
Q ss_pred -Eeechh----------------HHHHhhhhhhhHH------------------HHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 294 -SISGSE----------------FVEMFVGVGASRV------------------RDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 294 -~is~s~----------------~~~~~vG~~~~~v------------------r~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
.-+|.. |.+...+..+.++ ..++.+|. ..+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhC---
Confidence 111111 0111111111111 11222222 359999999998
Q ss_pred CCCCCCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEEecCccc-cccccccCCCCccceeeccCCCH-HHHHH
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTE 408 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~Pd~-~eR~~ 408 (582)
+...+..+.+.+.+- +|. ..+..+++|+++|..+ .+.++|+. ||...+.++.|+. ++|.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 344444444444321 111 1234689999998755 68999999 9999999998875 88899
Q ss_pred HHHHHcCCC-------------------------------CCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 409 ILKVHGSNK-------------------------------KFDADV--SLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 409 Il~~~l~~~-------------------------------~l~~dv--dl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
|++...... .+++++ .+..++..+..-+.+--..+++.|...|..+|
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 998743210 011111 02233334433356667789999999999999
Q ss_pred CCccCHHHHHHHHHHHHcC
Q 007989 456 KAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 456 ~~~It~~dl~~A~~~v~~g 474 (582)
+..|+.+|+..+..-++..
T Consensus 294 R~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998877643
No 153
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.47 E-value=2e-13 Score=156.15 Aligned_cols=214 Identities=21% Similarity=0.338 Sum_probs=140.3
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 302 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~- 302 (582)
..+|++++|.+.+.+++.+.+..+... +..|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999999888888765433 2369999999999999999997754 57999999987643
Q ss_pred ----Hhhhhh----hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--ccC----CC
Q 007989 303 ----MFVGVG----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----NT 368 (582)
Q Consensus 303 ----~~vG~~----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~~~----~~ 368 (582)
.++|.. .......|+.|. ..+||||||+.+ +...+..|.++|++-.- ... ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 233321 011112344443 458999999999 55566666666643210 111 12
Q ss_pred CeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHH----HHHHHcC--------CCCCCccccHHHHHHhC
Q 007989 369 GIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTE----ILKVHGS--------NKKFDADVSLDVIAMRT 432 (582)
Q Consensus 369 ~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~----Il~~~l~--------~~~l~~dvdl~~lA~~t 432 (582)
++.+|+||+.. +.+....+|+..|.+ .+.+.+|++.+|.+ +++.++. ...++++.--......|
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~W 536 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRW 536 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCC
Confidence 57899999863 122222233222222 67889999999965 2222221 12344444334446678
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+| |.++|+++++.|+..+ ....|+.+|+...+
T Consensus 537 PG-NvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 537 PG-NDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CC-hHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 99 9999999999998765 34578888887665
No 154
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.47 E-value=2.4e-13 Score=151.51 Aligned_cols=196 Identities=24% Similarity=0.337 Sum_probs=132.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH--
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-- 303 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~-- 303 (582)
++.+++|.+...+.+.+.+..+... +..|||+|++||||+++|+++... .+.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999999988876543 348999999999999999999775 4679999999877542
Q ss_pred ---hhhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 007989 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (582)
Q Consensus 304 ---~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~----~~ 367 (582)
++|... ......|+.|.. .+|||||||.+ +.+.+..+..++..-. ... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 222110 111224555543 48999999999 4555666666665321 111 12
Q ss_pred CCeEEEEecCccc--c-----ccccccCCCCccceeeccCCCHHHHHHHH----HHHc----C-----CCCCCccccHHH
Q 007989 368 TGIIVIAATNRAD--I-----LDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHG----S-----NKKFDADVSLDV 427 (582)
Q Consensus 368 ~~viVIaaTN~~~--~-----LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il----~~~l----~-----~~~l~~dvdl~~ 427 (582)
.++.+|++||..- . +.+.|.. |+. .+.+.+|++.+|.+-+ ++++ . ...++++.--..
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3689999998631 1 2222322 332 5778899999997722 2221 1 123445544455
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
....|+| |.++|+++++.|+..+.
T Consensus 398 ~~y~WPG-NvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPG-NVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHhcC
Confidence 5678999 99999999999998874
No 155
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=9.4e-13 Score=152.66 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=132.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc-eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH-----h
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-----F 304 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pk-gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~-----~ 304 (582)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 4688999999988888765322100 011244 48999999999999999999999999999999998652 2
Q ss_pred hhhhh-----hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh---cCc---cCCCCeEEE
Q 007989 305 VGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DGF---EGNTGIIVI 373 (582)
Q Consensus 305 vG~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l---d~~---~~~~~viVI 373 (582)
+|... .....+.+..+....+||+|||||.+ +.+....+.+++.+- |.. ..-.+.++|
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 33221 12223444455566789999999988 344444444444421 100 012357899
Q ss_pred EecCccc-------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-------CCC-
Q 007989 374 AATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFD- 420 (582)
Q Consensus 374 aaTN~~~-------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-------~l~- 420 (582)
+|||... .+.|.++. |||.+|.|.+.+.++..+|++..+.+. .+.
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l 676 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKL 676 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 9998631 24566766 999999999999999999998776421 111
Q ss_pred --ccccHHHHHHh--CCCCcHHHHHHHHHHHHHH
Q 007989 421 --ADVSLDVIAMR--TPGFSGADLANLLNEAAIL 450 (582)
Q Consensus 421 --~dvdl~~lA~~--t~G~sgadL~~lv~eA~~~ 450 (582)
++...+.|+.. .+.+..+.|+.+++.-...
T Consensus 677 ~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 677 ELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred EeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 11224455543 3445566777666655433
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.46 E-value=4.6e-13 Score=139.79 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=132.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH--hhhhhhhH----------HHHHHHHHhhCCCeEEEEeC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASR----------VRDLFKKAKENAPCIVFVDE 331 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~--~vG~~~~~----------vr~lF~~A~~~~P~ILfIDE 331 (582)
.+++||.||||||||++|+.+|.+++.|++.++++..... ++|...-. ....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3479999999999999999999999999999999876654 44432110 1123334433 468899999
Q ss_pred CCcccccCCCCCCCCChHHHHHHHHHHhh-----h----cCccCCCCeEEEEecCccc------------cccccccCCC
Q 007989 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTE-----M----DGFEGNTGIIVIAATNRAD------------ILDSALLRPG 390 (582)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~L~~LL~~-----l----d~~~~~~~viVIaaTN~~~------------~LD~aLlrpg 390 (582)
+|.. ..+.+..++.+|+. + +.+..++.+.||||+|..+ .+++|++.
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 44556677777763 1 1123455799999999854 46888988
Q ss_pred CccceeeccCCCHHHHHHHHHHHcCCCCCC-cccc---HHHHHHh----------CCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 391 RFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVS---LDVIAMR----------TPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 391 RFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvd---l~~lA~~----------t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
||-.++.++.|+.++-.+|+........-. .+.- +-.+|.. ..|+|++.+..+.+.+.+. +
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f----~- 284 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF----D- 284 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh----C-
Confidence 998788999999999999998765432200 0100 1112221 2345677666666555433 1
Q ss_pred CccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHHHHHHH
Q 007989 457 AAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICG 500 (582)
Q Consensus 457 ~~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaGhalv~ 500 (582)
.++..|++..+... -++..+.++||.-..+.+
T Consensus 285 -----~~~~~a~~~~~~n~-------~~~~er~~~~e~~q~~f~ 316 (327)
T TIGR01650 285 -----HDIALAFRLTFLNK-------CDELERPTVAEFFQRAFG 316 (327)
T ss_pred -----ccHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHcC
Confidence 14566665543221 133445677776555443
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.43 E-value=1.5e-12 Score=148.49 Aligned_cols=216 Identities=21% Similarity=0.325 Sum_probs=139.0
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------------------- 288 (582)
.|.+|+|++.+|..|.-.+. +|. ..||||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 58999999999976654332 221 1379999999999999999999876
Q ss_pred ---------------CCCEEEeechhHHHHhhhhhh--hHH--------HHHHHHHhhCCCeEEEEeCCCcccccCCCCC
Q 007989 289 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (582)
Q Consensus 289 ---------------~~pfi~is~s~~~~~~vG~~~--~~v--------r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~ 343 (582)
..||+.+.++...+.++|... ..+ ..++..|. ..|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhC--------
Confidence 357777666544444444210 000 11222222 249999999999
Q ss_pred CCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEEecCccc-cccccccCCCCccceeeccCCC-HHHHHHHHHHH
Q 007989 344 GGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVH 413 (582)
Q Consensus 344 ~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~Pd-~~eR~~Il~~~ 413 (582)
+...+..|.+++++- ++. ....++++|+++|..+ .+.++|+. ||+.++.++.|. .+++.++++..
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 344444444444321 111 1124689999999643 57889999 999888887764 56777777643
Q ss_pred cCC-------------------------------CCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHhCCCcc
Q 007989 414 GSN-------------------------------KKFDADVSLDVIAMRT--PGF-SGADLANLLNEAAILAGRRGKAAI 459 (582)
Q Consensus 414 l~~-------------------------------~~l~~dvdl~~lA~~t--~G~-sgadL~~lv~eA~~~A~r~~~~~I 459 (582)
... ..+.++ .++.++..+ -|. +.+-...+++-|..+|..+++..|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~-~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 214 LAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDS-LIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 210 111111 122232221 233 355666788999999999999999
Q ss_pred CHHHHHHHHHHHHc
Q 007989 460 SSKEIDDSIDRIVA 473 (582)
Q Consensus 460 t~~dl~~A~~~v~~ 473 (582)
+.+|+.+|+.-++.
T Consensus 293 ~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 293 TAEDVREAAELVLP 306 (633)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988773
No 158
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.41 E-value=2.4e-12 Score=148.51 Aligned_cols=200 Identities=25% Similarity=0.382 Sum_probs=132.9
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~ 303 (582)
+.+|++++|.+.+.+.+.+.+..+... ..+|||+|++|||||++|+++... .+.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457999999999999999888875443 237999999999999999999764 4679999999875432
Q ss_pred -----hhhhh-------hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----
Q 007989 304 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE---- 365 (582)
Q Consensus 304 -----~vG~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~---- 365 (582)
++|.. .......|+.+.. .+|||||||.+ +.+.+..+..++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~---GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADK---SSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCC---CeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 22210 1112344555543 59999999999 4555666666665421 111
Q ss_pred CCCCeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHHHH----HHHc----CC----C-CCCccccHHHH
Q 007989 366 GNTGIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEIL----KVHG----SN----K-KFDADVSLDVI 428 (582)
Q Consensus 366 ~~~~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il----~~~l----~~----~-~l~~dvdl~~l 428 (582)
...++.+|++|+.. +.+....+++..|.+ .+.+.+|+..+|.+-+ +.++ ++ . .++++.--...
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 12468899999863 222333333222222 6788999999997732 2222 11 1 24444434445
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHH
Q 007989 429 AMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 429 A~~t~G~sgadL~~lv~eA~~~A 451 (582)
...|+| |.++|+++++.|+..+
T Consensus 588 ~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 588 NMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred hCCCCC-cHHHHHHHHHHHHHhC
Confidence 678999 9999999999998765
No 159
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=4e-12 Score=114.63 Aligned_cols=123 Identities=40% Similarity=0.631 Sum_probs=83.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhhhhhH---HHHHHHHHhhCCCeEEEEeCCCcccc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~~~~~---vr~lF~~A~~~~P~ILfIDEID~l~~ 337 (582)
.++++++||||||||++++.++..+ +.+++++++.++........... ....+.......+++|+|||++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~-- 96 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-- 96 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh--
Confidence 3479999999999999999999998 89999999988766443222111 122233444556889999999987
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCc-cCCCCeEEEEecCccc--cccccccCCCCccceeecc
Q 007989 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVD 399 (582)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~~ld~~-~~~~~viVIaaTN~~~--~LD~aLlrpgRFdr~I~i~ 399 (582)
..+....+.+++...... ....++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 97 ---------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 ---------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ---------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 122223333434333211 1135788999998876 67777777 898666664
No 160
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.6e-11 Score=130.69 Aligned_cols=191 Identities=18% Similarity=0.225 Sum_probs=130.3
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEe--
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI-- 295 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-------pfi~i-- 295 (582)
..+..|++|+|++++++.+...+.. .+.|+.+||+||+|+|||++|+++|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3467899999999999999888862 356778999999999999999999998755 21111
Q ss_pred --echhHHHH--------h-h-------------hhhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCC
Q 007989 296 --SGSEFVEM--------F-V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGN 347 (582)
Q Consensus 296 --s~s~~~~~--------~-v-------------G~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~ 347 (582)
.|...... + + ..+.+.+|++-+... .+...|++|||+|.+ +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 11111000 0 0 011234454443332 234569999999999 2
Q ss_pred hHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHH
Q 007989 348 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV 427 (582)
Q Consensus 348 ~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~ 427 (582)
....|.||..++.. ..+.++|..|+.++.+.|.+++ |+ +.+.+++|+.++-.++++.......++ +..+..
T Consensus 155 ---~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~ 225 (351)
T PRK09112 155 ---RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEA 225 (351)
T ss_pred ---HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHH
Confidence 33567788888753 3445666667778888899988 88 599999999999999998754332222 223667
Q ss_pred HHHhCCCCcHHHHHHHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA 447 (582)
++..+.| +++...++++..
T Consensus 226 i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred HHHHcCC-CHHHHHHHHhcC
Confidence 7888887 887777776544
No 161
>PHA02244 ATPase-like protein
Probab=99.36 E-value=3.2e-11 Score=127.60 Aligned_cols=148 Identities=23% Similarity=0.359 Sum_probs=95.8
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh--h
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--V 305 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~--v 305 (582)
+++.-+.+..........+..++... .+|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~-----------~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN-----------IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 34444444444445555555544433 3799999999999999999999999999999853 2211 1
Q ss_pred hh--hhhHHH-HHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh-----hc-CccCCCCeEEEEec
Q 007989 306 GV--GASRVR-DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD-GFEGNTGIIVIAAT 376 (582)
Q Consensus 306 G~--~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~-----ld-~~~~~~~viVIaaT 376 (582)
|. ....+. .-|-.|. ...++|+|||++.+ .......++.++.. .+ ....+.++.+|+|+
T Consensus 161 G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 161 GFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred ccccccccccchHHHHHh-hcCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 10 001111 1122222 23469999999998 44455666666642 11 11234679999999
Q ss_pred Ccc-----------ccccccccCCCCccceeeccCCCH
Q 007989 377 NRA-----------DILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 377 N~~-----------~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
|.+ ..+++++++ ||- .|+++.|+.
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 973 578999999 995 799999984
No 162
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=3.7e-11 Score=128.44 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=128.2
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------E----
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F---- 293 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------i---- 293 (582)
..+.++++|+|++.+++.|.+.+.. .+.|+.+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999987763 35677899999999999999999999763210 0
Q ss_pred ----Eeech---hHHH------Hhh-----h--------hhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCC
Q 007989 294 ----SISGS---EFVE------MFV-----G--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGI 343 (582)
Q Consensus 294 ----~is~s---~~~~------~~v-----G--------~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~ 343 (582)
.-.|. .+.. .++ + -....+|++.+.+. ...|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00111 1100 000 1 11234666655442 345789999999998
Q ss_pred CCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccc
Q 007989 344 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV 423 (582)
Q Consensus 344 ~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv 423 (582)
+ ....|.||..++. ...+.++|.+|+.++.+.+.+++ |+. .+.+++|+.++-.+++...... ..+.
T Consensus 154 ---~---~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 ---N---ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ---C---HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 2 3466777777774 34456777888888889999888 874 8899999999999988876422 1122
Q ss_pred cHHHHHHhCCCCcHHHHHHHHH
Q 007989 424 SLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 424 dl~~lA~~t~G~sgadL~~lv~ 445 (582)
.+..++..+.| ++....++++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHhc
Confidence 23567777877 7776666554
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=3.9e-11 Score=141.32 Aligned_cols=205 Identities=22% Similarity=0.302 Sum_probs=133.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH----
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~---- 303 (582)
+.|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 5699999999999998876432100 001233468999999999999999999976 569999999987542
Q ss_pred -hhhhhhh-----HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh---cCc---cCCCCeE
Q 007989 304 -FVGVGAS-----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DGF---EGNTGII 371 (582)
Q Consensus 304 -~vG~~~~-----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l---d~~---~~~~~vi 371 (582)
++|.... ....+.+..+....+||+|||||.+ +...+..+.+++.+- |+. ..-.+.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 2221111 1123344445555689999999987 455555555555431 110 0123578
Q ss_pred EEEecCccc-------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHcCC-------CCC
Q 007989 372 VIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-------KKF 419 (582)
Q Consensus 372 VIaaTN~~~-------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~-------~~l 419 (582)
||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+.. ..+
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999721 13356666 99999999999999999988765431 111
Q ss_pred C---ccccHHHHHHh-C-CCCcHHHHHHHHHHHHHHH
Q 007989 420 D---ADVSLDVIAMR-T-PGFSGADLANLLNEAAILA 451 (582)
Q Consensus 420 ~---~dvdl~~lA~~-t-~G~sgadL~~lv~eA~~~A 451 (582)
. ++...+.|+.. + +.+..++|+++++......
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 1 12224555554 3 2457888888888776544
No 164
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=2.2e-11 Score=134.87 Aligned_cols=212 Identities=24% Similarity=0.334 Sum_probs=135.8
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc------------------
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 288 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~------------------ 288 (582)
...|+||.|++.+++.+.-.+. ...+++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3589999999999776554331 12479999999999999999998622
Q ss_pred ----------CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 289 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 289 ----------~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
..||...+++......+|.+...-...+..|.. .+|||||++.+ +...+..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHH
Confidence 235554444433333334332222334555543 49999999998 445555666665
Q ss_pred hhhc----C----ccCCCCeEEEEecCcc------c-----------------cccccccCCCCccceeeccCCCHHH--
Q 007989 359 TEMD----G----FEGNTGIIVIAATNRA------D-----------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (582)
Q Consensus 359 ~~ld----~----~~~~~~viVIaaTN~~------~-----------------~LD~aLlrpgRFdr~I~i~~Pd~~e-- 405 (582)
+.-. . .....++.+|+++|.- + .+...|+. |||.++.++.++..+
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 4311 0 0113478999999962 1 47788888 999999988765432
Q ss_pred -----------HHHHHHH------HcCCC---CCCcccc-----------------HHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 406 -----------RTEILKV------HGSNK---KFDADVS-----------------LDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 406 -----------R~~Il~~------~l~~~---~l~~dvd-----------------l~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
|.++.+. .++.. .+...+. ++. +...-++|.+....+++-|.
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~-a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEG-ALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHH-HHHhcCCCchHHHHHHHHHH
Confidence 2223221 11111 1111111 111 22334589999999999999
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~ 469 (582)
.+|.-++.+.|+.+|+.+|+.
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999974
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.33 E-value=3.2e-11 Score=141.55 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=128.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH---
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkg-vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~--- 303 (582)
+.|+|++++.+.+.+.+...+..-.+ ...|.| +||+||||||||.+|+++|..+ ...++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 47889999999988888653221100 123555 8999999999999999999988 458899999998753
Q ss_pred ---------hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc---Cc---cCCC
Q 007989 304 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---GF---EGNT 368 (582)
Q Consensus 304 ---------~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld---~~---~~~~ 368 (582)
|+|.... ..+.+..++..++||+|||||.. +......+.+++..-. +. ..-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 2332221 12334445677799999999986 4444444445444211 00 0114
Q ss_pred CeEEEEecCccc-----------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC--
Q 007989 369 GIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-- 417 (582)
Q Consensus 369 ~viVIaaTN~~~-----------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-- 417 (582)
+.++|.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+...
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 678999998511 14566777 887 88999999999999997765331
Q ss_pred ------CCCccc---cHHHHHHhCC--CCcHHHHHHHHHHHHH
Q 007989 418 ------KFDADV---SLDVIAMRTP--GFSGADLANLLNEAAI 449 (582)
Q Consensus 418 ------~l~~dv---dl~~lA~~t~--G~sgadL~~lv~eA~~ 449 (582)
++.-.+ ..+.|+.... .+-.+.|.++++.-..
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 222112 2455555543 2456777777665443
No 166
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=1.1e-10 Score=118.94 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=119.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC-CEEE---e----echhHHHHh---hhhh---h------hHHHHHH-HHHhhCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGV-PFFS---I----SGSEFVEMF---VGVG---A------SRVRDLF-KKAKENAP 324 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~-pfi~---i----s~s~~~~~~---vG~~---~------~~vr~lF-~~A~~~~P 324 (582)
.++|+||+|+|||++++.++.++.. .+.. + +..++.... .|.. . ..+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 1 112222111 1211 1 1122222 22345677
Q ss_pred eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec--Ccccccc----ccccCCCCccceeec
Q 007989 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT--NRADILD----SALLRPGRFDRQVTV 398 (582)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT--N~~~~LD----~aLlrpgRFdr~I~i 398 (582)
++|+|||+|.+ .......+..+..... .....+.|+.+. ...+.+. ..+.+ |+...+++
T Consensus 125 ~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 89999999998 2222333333332211 112223223322 2222222 12444 67778899
Q ss_pred cCCCHHHHHHHHHHHcCCCCC-----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 399 DVPDIRGRTEILKVHGSNKKF-----DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~~l~~~~l-----~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
++.+.++..+++...+..... -.+..++.+++.+.| .++.|..+|+.+...|..++...|+.+++++++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRG-IPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999887653321 123457888999999 678899999999999999999999999999998764
No 167
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.31 E-value=5.5e-11 Score=125.51 Aligned_cols=135 Identities=36% Similarity=0.422 Sum_probs=89.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHH------HHHHhh--CCC--eEEEEeCCCcc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDL------FKKAKE--NAP--CIVFVDEIDAV 335 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~l------F~~A~~--~~P--~ILfIDEID~l 335 (582)
++||.||||||||++|+++|...+.+|+.++|......--..+....... |+...+ ... +|+++|||+..
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra 124 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA 124 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccC
Confidence 79999999999999999999999999999999865542111111111110 000000 001 49999999887
Q ss_pred cccCCCCCCCCChHHHHHHHHHHhhhc------C-ccCCCCeEEEEecC-----ccccccccccCCCCccceeeccCCCH
Q 007989 336 GRQRGTGIGGGNDEREQTLNQLLTEMD------G-FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~L~~LL~~ld------~-~~~~~~viVIaaTN-----~~~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
+.+.+..+.+.+.+.. . +.-+..++||+|+| ....|++++++ ||...+.++.|+.
T Consensus 125 -----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 125 -----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred -----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 4445555555555421 1 33456789999999 45578999999 9988999999954
Q ss_pred H-HHHHHHHHH
Q 007989 404 R-GRTEILKVH 413 (582)
Q Consensus 404 ~-eR~~Il~~~ 413 (582)
+ +...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 4 444444443
No 168
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.30 E-value=2.9e-11 Score=134.82 Aligned_cols=225 Identities=18% Similarity=0.226 Sum_probs=133.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-EEEe---echhHHHHhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSI---SGSEFVEMFVG 306 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-fi~i---s~s~~~~~~vG 306 (582)
.+|.|++.+|..+.-.+---..+..-.....+-.-+|||+|+||||||++|++++...... |... ++..+......
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 3578999887766543321111100000111222379999999999999999999976533 2221 22222110000
Q ss_pred h---hhhHH-HHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEEE
Q 007989 307 V---GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIA 374 (582)
Q Consensus 307 ~---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVIa 374 (582)
. +...+ ...+..| ...+++|||+|.+ ....+..+.+.+++- .|. .-+..+.|||
T Consensus 283 ~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEGGALVLA---DNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecCccEEec---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 00000 0112222 2359999999998 334444555544321 111 1134689999
Q ss_pred ecCccc-------------cccccccCCCCcccee-eccCCCHHHHHHHHHHHcCCCC-------------CC-------
Q 007989 375 ATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILKVHGSNKK-------------FD------- 420 (582)
Q Consensus 375 aTN~~~-------------~LD~aLlrpgRFdr~I-~i~~Pd~~eR~~Il~~~l~~~~-------------l~------- 420 (582)
|+|+.+ .|++++++ |||..+ ..+.|+.+...+|.++.+.... ++
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~y 426 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKY 426 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHH
Confidence 999753 58999999 999854 4588999999888876432100 00
Q ss_pred ---------cccc---HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 421 ---------ADVS---LDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 421 ---------~dvd---l~~lA-----~~----------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
+.+. .+.+. .+ .-+.|++.++.+++-|...|.-+++..|+.+|+++|++-+
T Consensus 427 i~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 427 IAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0011 11110 01 1256899999999999999999999999999999998754
No 169
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.30 E-value=1.1e-11 Score=135.59 Aligned_cols=206 Identities=22% Similarity=0.312 Sum_probs=133.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v 305 (582)
.+.+++|.+...+.+.+.+..+... ...++|+|++||||+++|+++.... +.||+.++|..+.+..+
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4667999998888888877654332 2379999999999999999997654 57999999987654322
Q ss_pred -----hhh-------hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CC
Q 007989 306 -----GVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (582)
Q Consensus 306 -----G~~-------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~----~~ 367 (582)
|.. .......|+.+. ..+|||||||.+ +.+.+..+.+++..-. ... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeECC---CCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 110 011122333333 358999999999 4556666666665421 001 12
Q ss_pred CCeEEEEecCccc-------cccccccCCCCccceeeccCCCHHHHHHH----HHHHc----CC-----CCCCccccHHH
Q 007989 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHG----SN-----KKFDADVSLDV 427 (582)
Q Consensus 368 ~~viVIaaTN~~~-------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I----l~~~l----~~-----~~l~~dvdl~~ 427 (582)
.++.+|++|+..- .+.+.|.. |+. .+.+.+|+..+|.+- +++++ .. ..++++.--..
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3688999987631 22233332 332 578889999999872 22222 11 12444443344
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
....|+| |.++|+++++.|+..+ ....|+.+++.
T Consensus 350 ~~~~wpg-NvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 350 EAHAWPG-NVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 4677999 9999999999998765 34577777764
No 170
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.29 E-value=8.4e-11 Score=121.12 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=138.7
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeech-
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS- 298 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s- 298 (582)
.=+-.+|+..+++.+..+-+.+..|.. ..+.++||+|++|.|||++++.++... .+|++++.+.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 334568999999999888888888864 223479999999999999999998643 3688888753
Q ss_pred -----hHHHHhh---hh-------hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 299 -----EFVEMFV---GV-------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 299 -----~~~~~~v---G~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
.|..... |. ..+.-.......+...+-+|+|||+|.+... ........+| +|..+-
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln-~LK~L~- 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLN-ALKFLG- 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHH-HHHHHh-
Confidence 2222111 11 1111222334445667779999999997421 2223333333 333331
Q ss_pred ccCCCCeEEEEecCccc--cccccccCCCCccceeeccCCC-HHHHHHHHHHHcCCCCCC------ccccHHHHHHhCCC
Q 007989 364 FEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFD------ADVSLDVIAMRTPG 434 (582)
Q Consensus 364 ~~~~~~viVIaaTN~~~--~LD~aLlrpgRFdr~I~i~~Pd-~~eR~~Il~~~l~~~~l~------~dvdl~~lA~~t~G 434 (582)
-.-+-.++.+++..-.. .-|+.+-+ ||+ .+.++.-. -++...++..+-...++. .......|-..+.|
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG 253 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 11122345555433222 33788888 997 34444332 234455665554444433 22224567778888
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 435 ~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
+.+++..+++.|+..|.+.|++.||.+.++..
T Consensus 254 -~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 254 -LIGELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred -chHHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 78899999999999999999999999988753
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.28 E-value=1e-10 Score=137.55 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=112.4
Q ss_pred ccccccchHHHHHHHHHHHHhc----CchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~----~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
++.|+|++++.+.+.+.+...+ +|. ++...+||+||||||||++|+++|..+ +.+++.++|+++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 4578999999999999887643 222 112358999999999999999999876 56899999998865
Q ss_pred H-----hhhhhh-----hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh---cCc---cC
Q 007989 303 M-----FVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DGF---EG 366 (582)
Q Consensus 303 ~-----~vG~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l---d~~---~~ 366 (582)
. ++|... ..-..+.+..+....++|+|||++.+ +.+.+..+.+++.+- |+. ..
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEEe
Confidence 3 222111 11111222333444489999999987 445555555555431 110 01
Q ss_pred CCCeEEEEecCccc-------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHcC
Q 007989 367 NTGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (582)
Q Consensus 367 ~~~viVIaaTN~~~-------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~ 415 (582)
-.+.++|+|||... .+.|+|+. |+|..+.+.+++.++..+|++..+.
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 12467899998621 23467777 9999999999999999888876654
No 172
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1e-10 Score=122.61 Aligned_cols=177 Identities=14% Similarity=0.264 Sum_probs=121.0
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------EEEeechh
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSE 299 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------fi~is~s~ 299 (582)
.+|+||+|++.+++.+...+. ..+.|+.+||+||+|+|||++|+++|..+.+. ++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 369999999999998888774 23567789999999999999999999976432 22222210
Q ss_pred HHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
. ...+...+|++.+.+.. ....|++|||+|.+ + ....|.||..++. +..++++|.+
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~---~~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------T---EQAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------C---HHHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 01123456776665432 23469999999998 2 3356788888874 3455666666
Q ss_pred cCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHH
Q 007989 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLAN 442 (582)
Q Consensus 376 TN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~ 442 (582)
|+.++.+.|.+++ |+. .++++.|+.++-...++..... .+ +...+.++..+.| ++..+..
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g-~~~~a~~ 189 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG-IPGKVEK 189 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC-CHHHHHH
Confidence 6778999999999 774 8999999999888877765432 22 2235566666666 4444433
No 173
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.27 E-value=1.5e-11 Score=135.46 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=137.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh-
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 304 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~- 304 (582)
.+.+++|.+...+.+.+.+..+... ...+++.|++|||||++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999999988888877654433 2379999999999999999997765 5799999998764321
Q ss_pred ----hhhhhh-------HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--c----cCC
Q 007989 305 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F----EGN 367 (582)
Q Consensus 305 ----vG~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~----~~~ 367 (582)
.|.... .....|+.+. ...|||||+|.+ +.+.+..+.+++..-.- . ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQAD---GGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 121100 0012233332 358999999999 45556666666653210 0 012
Q ss_pred CCeEEEEecCccc-------cccccccCCCCccceeeccCCCHHHHHH----HHHHHcC----C-----CCCCccccHHH
Q 007989 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----N-----KKFDADVSLDV 427 (582)
Q Consensus 368 ~~viVIaaTN~~~-------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~----Il~~~l~----~-----~~l~~dvdl~~ 427 (582)
.++.+|++|+..- .+.+.|+. ||. .+.+.+|+..+|.+ ++++++. . ..++++..-..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578999987531 23344444 443 57888899888877 3333321 1 12445554455
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
....|+| |.++|+++++.|+..+ ....|+.+|+...+
T Consensus 349 ~~~~wpg-Nv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 349 TRLAWPG-NVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 6778999 9999999999998776 45578888876444
No 174
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-10 Score=132.47 Aligned_cols=168 Identities=26% Similarity=0.375 Sum_probs=129.8
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (582)
....-.++-|+|.++.++.+.+++..-. ..+-+|+|+||+|||.++..+|.+. +..++
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~RR~------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSRRT------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhccC------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 3456789999999999988887775421 2257899999999999999999865 56678
Q ss_pred EeechhHHH--HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 007989 294 SISGSEFVE--MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (582)
Q Consensus 294 ~is~s~~~~--~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~vi 371 (582)
.++...++. +|-|+.+++++.+.++..+..+.||||||||.+.+...+.. + .......+.-.|. +..+.
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~ 301 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELR 301 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeE
Confidence 888888875 68899999999999999988899999999999965433211 1 1223334444443 56789
Q ss_pred EEEecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcC
Q 007989 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (582)
Q Consensus 372 VIaaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~ 415 (582)
+|+||...+ .=|+||-| ||. .|.+.-|+.++-..||+-.-.
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHH
Confidence 999997644 23999999 996 899999999999999986543
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=1e-10 Score=137.36 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=112.8
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc-eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH----
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE---- 302 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pk-gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~---- 302 (582)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||.+|+++|..+ +.+++.+++++|.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5789999999999888865321100 012233 48999999999999999999987 46899999988854
Q ss_pred -Hhhhhhh-----hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc---C--c-cCCCCe
Q 007989 303 -MFVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---G--F-EGNTGI 370 (582)
Q Consensus 303 -~~vG~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld---~--~-~~~~~v 370 (582)
.+.|..+ .....+.+..+....+||+|||+|.+ +......+.+++++-. . . ..-.+.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 2222211 11233555555666689999999987 4444444444444310 0 0 012468
Q ss_pred EEEEecCcccc-------------------------------------ccccccCCCCccceeeccCCCHHHHHHHHHHH
Q 007989 371 IVIAATNRADI-------------------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (582)
Q Consensus 371 iVIaaTN~~~~-------------------------------------LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~ 413 (582)
++|.|||.... +.|.++. |+|.+|.|.+.+.++..+|++..
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 99999985321 2245666 99999999999999999998776
Q ss_pred cC
Q 007989 414 GS 415 (582)
Q Consensus 414 l~ 415 (582)
+.
T Consensus 732 l~ 733 (821)
T CHL00095 732 LK 733 (821)
T ss_pred HH
Confidence 54
No 176
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.25 E-value=8.3e-11 Score=114.04 Aligned_cols=144 Identities=18% Similarity=0.267 Sum_probs=99.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEeechhHHHHhhhhhhhHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~s~~~~~~vG~~~~~vr~lF~ 317 (582)
+.|..+||+||+|+|||++|++++.+..+. +..+.... ...+.+.++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 467789999999999999999999987442 12211100 0112345666666
Q ss_pred HHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCcc
Q 007989 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (582)
Q Consensus 318 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFd 393 (582)
.+.. ....|++|||+|.+. ....+.||..++.. +...++|.+||.++.+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE
Confidence 6543 335699999999982 23456777777752 3345666667777999999998 774
Q ss_pred ceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCC
Q 007989 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (582)
Q Consensus 394 r~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G 434 (582)
.+.+++|+.++..++++.+ .+++ ..++.++..+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 8999999999999998876 2333 336677777666
No 177
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.25 E-value=1.9e-10 Score=125.50 Aligned_cols=212 Identities=18% Similarity=0.163 Sum_probs=124.7
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeech-hHHHHhhhhh
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS-EFVEMFVGVG 308 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s-~~~~~~vG~~ 308 (582)
.|+|.+++++.+...+. . ..++||+||||||||++|++++...+. ||....+. ...+..+|..
T Consensus 21 ~i~gre~vI~lll~aal--a------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--S------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--c------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 46777777765554432 1 237999999999999999999987643 66655543 1122233321
Q ss_pred -hhHH--HHHHHHHhhC---CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC-c-cC------CCCeEEEE
Q 007989 309 -ASRV--RDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-F-EG------NTGIIVIA 374 (582)
Q Consensus 309 -~~~v--r~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~-~-~~------~~~viVIa 374 (582)
.... ...|.....+ ...+||+|||..+ +. .+.+.||..|+. . .. -+..++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp---~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GP---AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CH---HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0110 1223222211 2349999999876 33 345555555521 1 00 11234455
Q ss_pred ecCccc---cccccccCCCCccceeeccCCC-HHHHHHHHHHHcCC--CC------CC-----------------cccc-
Q 007989 375 ATNRAD---ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSN--KK------FD-----------------ADVS- 424 (582)
Q Consensus 375 aTN~~~---~LD~aLlrpgRFdr~I~i~~Pd-~~eR~~Il~~~l~~--~~------l~-----------------~dvd- 424 (582)
|||... ...++++. ||-..+.+++|+ .++..+++...... .. +. +.+-
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 557421 23358888 997788999997 45557787653221 11 11 0000
Q ss_pred -HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 007989 425 -LDVIAMR---T---PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 425 -l~~lA~~---t---~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g 474 (582)
+..+... + ...|++--..+++-|...|.-.|+..|+.+|+. .+..+++.
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1222221 2 237889999999999999999999999999999 55555554
No 178
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.24 E-value=1.6e-10 Score=131.09 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=66.7
Q ss_pred CeEEEEecCcc--ccccccccCCCCcc---ceeec--cCCC-HHHHHHHHHHH---cCCC----CCCccccHHHHH---H
Q 007989 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTV--DVPD-IRGRTEILKVH---GSNK----KFDADVSLDVIA---M 430 (582)
Q Consensus 369 ~viVIaaTN~~--~~LD~aLlrpgRFd---r~I~i--~~Pd-~~eR~~Il~~~---l~~~----~l~~dvdl~~lA---~ 430 (582)
++.||+++|.. ..+|+.|++ ||+ ..+++ ..|+ .+.|.++.+.. +++. .++.+. ++.+. .
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~A-v~~Li~~~~ 344 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDA-VEEIVREAQ 344 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHH-HHHHHHHHH
Confidence 68899999975 578999999 998 55555 3344 44555444332 2222 122221 22222 1
Q ss_pred hCCC------CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 431 RTPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 431 ~t~G------~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
+..| .+.++|.+++++|...|..++...|+.+|+++|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 1111 46799999999998888888889999999999987543
No 179
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.24 E-value=4.1e-11 Score=131.40 Aligned_cols=209 Identities=25% Similarity=0.365 Sum_probs=133.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHh-
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~- 304 (582)
.+.+++|.+....++.+.+..+.... ..++++|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678898888887777666554432 37999999999999999999665 46799999998764432
Q ss_pred ----hhhhhh-------HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----C
Q 007989 305 ----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----N 367 (582)
Q Consensus 305 ----vG~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~~----~ 367 (582)
+|.... .....|+.+. ..+|||||||.+ +...+..+..++..-. .... .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 221100 0112333332 358999999999 4455555555554321 0111 2
Q ss_pred CCeEEEEecCccccccccccCCCCccc-------eeeccCCCHHHHHHHHH----HHc----C----C-CCCCccccHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTEILK----VHG----S----N-KKFDADVSLDV 427 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr-------~I~i~~Pd~~eR~~Il~----~~l----~----~-~~l~~dvdl~~ 427 (582)
.++.+|++||..- ..+.+.|+|.. .+.+..|+..+|.+-+. .++ . . ..++++..-..
T Consensus 277 ~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3588999998631 12222233322 57788999999876332 222 1 1 13444443444
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 428 lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
....|+| |.++|++++++|+..+ ....|+.+|+...+
T Consensus 354 ~~~~wpg-Nv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 354 TAWSWPG-NIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HcCCCCC-cHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 5667999 9999999999998765 45578888886544
No 180
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.22 E-value=6.6e-11 Score=133.94 Aligned_cols=191 Identities=23% Similarity=0.319 Sum_probs=124.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHHHHhhhhhh--hHH--------HHHHHHHhhCCCeEEEEeCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~~~~vG~~~--~~v--------r~lF~~A~~~~P~ILfIDEID 333 (582)
+|||.|+||||||++|++++.... .||+.+..+...+..+|... ..+ ..++.+| ...+||||||+
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi~ 94 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMAN 94 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccchh
Confidence 799999999999999999999764 47988876433344444310 000 0011112 12499999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhc------Ccc--CCCCeEEEEecCccc---cccccccCCCCccceeecc-CC
Q 007989 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMD------GFE--GNTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVD-VP 401 (582)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~L~~LL~~ld------~~~--~~~~viVIaaTN~~~---~LD~aLlrpgRFdr~I~i~-~P 401 (582)
.+ +...+..|.+.+.+-. |.. ....+.|||++|..+ .+.++|+. ||+.++.+. +|
T Consensus 95 rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 98 3444444444443211 111 124689999999865 78899999 999877765 56
Q ss_pred CHHHHHHHHHHHcCC-------------------------CCCCccccHHHHHHh--CCCCc-HHHHHHHHHHHHHHHHH
Q 007989 402 DIRGRTEILKVHGSN-------------------------KKFDADVSLDVIAMR--TPGFS-GADLANLLNEAAILAGR 453 (582)
Q Consensus 402 d~~eR~~Il~~~l~~-------------------------~~l~~dvdl~~lA~~--t~G~s-gadL~~lv~eA~~~A~r 453 (582)
+.++|.+|++..... ..++++ .++.++.. .-|.+ .+--..+++-|...|..
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHH
Confidence 788899988775421 111111 12222221 12332 45556888999999999
Q ss_pred hCCCccCHHHHHHHHHHHHc
Q 007989 454 RGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 454 ~~~~~It~~dl~~A~~~v~~ 473 (582)
+++..|+.+|+..|+.-++.
T Consensus 241 ~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 241 HGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred hCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999987763
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.22 E-value=8.5e-11 Score=104.62 Aligned_cols=126 Identities=34% Similarity=0.510 Sum_probs=82.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEeechhHHHHh--------------hhhhhhHHHHHHHHHhhCCCeE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEMF--------------VGVGASRVRDLFKKAKENAPCI 326 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~s~~~~~~--------------vG~~~~~vr~lF~~A~~~~P~I 326 (582)
+..++|+||||||||++++.+|..+..+ +++++++...... ........+..++.++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 8888887554321 1234456778888888877899
Q ss_pred EEEeCCCcccccCCCCCCCCChHHHHHHHHH--HhhhcCccCCCCeEEEEecCc-cccccccccCCCCccceeeccCC
Q 007989 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVP 401 (582)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~L--L~~ld~~~~~~~viVIaaTN~-~~~LD~aLlrpgRFdr~I~i~~P 401 (582)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984321 11111100 000011122456788888886 3333444444 88888877654
No 182
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.22 E-value=3.6e-10 Score=114.39 Aligned_cols=130 Identities=25% Similarity=0.324 Sum_probs=89.1
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-------------cccccccccCC
Q 007989 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRP 389 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-------------~~~LD~aLlrp 389 (582)
-|.+|||||++.| +-+.-..|+.-|+ ++-.-+||.|||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3889999999998 3444444444443 2223367777775 3445555555
Q ss_pred CCccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 390 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 390 gRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
|+- .|..-+.+.++-++|++...+...+.- +..+..++.....-|.+-..+++.-|.+.|...|+..|..+|++++-
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 442 555567788888899998876665542 33366677665555677777788888899999999999999999887
Q ss_pred HHHH
Q 007989 469 DRIV 472 (582)
Q Consensus 469 ~~v~ 472 (582)
+-.+
T Consensus 436 ~Lf~ 439 (456)
T KOG1942|consen 436 ELFL 439 (456)
T ss_pred HHHH
Confidence 6544
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=3.5e-10 Score=118.71 Aligned_cols=184 Identities=15% Similarity=0.225 Sum_probs=126.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p----------------- 291 (582)
.|+||+|++++++.+...+.. .+.|.++||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999988863 3456789999999999999999999976332
Q ss_pred -EEEeechh------HHHHh---hh--------hhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChH
Q 007989 292 -FFSISGSE------FVEMF---VG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 349 (582)
Q Consensus 292 -fi~is~s~------~~~~~---vG--------~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e 349 (582)
++.+.... ....+ .| -....+|++.+.+.. ....|++||++|.+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------- 136 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------- 136 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc--------------
Confidence 12121100 00000 00 012345666555532 33579999999998
Q ss_pred HHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHH
Q 007989 350 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 429 (582)
Q Consensus 350 ~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA 429 (582)
.....|.||..++... +.++|..|+.++.|-|.+++ |+ ..+.|++|+.++-.++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2346678888887543 34566677788999999999 87 48999999999999988876432211 22346778
Q ss_pred HhCCCCcHHHHHHHHHH
Q 007989 430 MRTPGFSGADLANLLNE 446 (582)
Q Consensus 430 ~~t~G~sgadL~~lv~e 446 (582)
....| ++++..++++.
T Consensus 209 ~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 209 ALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 88888 77777666654
No 184
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=4e-10 Score=125.50 Aligned_cols=215 Identities=23% Similarity=0.291 Sum_probs=135.8
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhh----h-------------------hcCCCCceEEEEcCC
Q 007989 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFT----A-------------------IGARIPKGVLLVGPP 273 (582)
Q Consensus 217 ~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~----~-------------------~g~~~pkgvLL~GPp 273 (582)
..++|++++.+-.|.|+.|-+..-+.+...+... ++-.|. + .+.+..|-+||+|||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W-D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW-DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhh-cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 4569999999999999999998887665554331 000111 1 122223579999999
Q ss_pred CCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHh--------hCCCeEEEEeCCCcccccCCCCCCC
Q 007989 274 GTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK--------ENAPCIVFVDEIDAVGRQRGTGIGG 345 (582)
Q Consensus 274 GTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~--------~~~P~ILfIDEID~l~~~r~~~~~~ 345 (582)
|.|||+||+.+|+.+|..++.+++++-.. +..++..++.|- ...|..|+|||||--
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------- 399 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------- 399 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC----------
Confidence 99999999999999999999999987432 233443333332 256888889999864
Q ss_pred CChHHHHHHHHHHhh----hcCccCCC------------CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHH
Q 007989 346 GNDEREQTLNQLLTE----MDGFEGNT------------GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (582)
Q Consensus 346 ~~~e~~~~L~~LL~~----ld~~~~~~------------~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~I 409 (582)
....-.++..++.. ..|-.... .--|||.+|... -|+|+.=--|-..+.|.+|...-..+=
T Consensus 400 -~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 400 -PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred -cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHH
Confidence 22222333333331 11111100 135777788533 455542113777889988887766666
Q ss_pred HHHHcCCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 410 LKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 410 l~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
|+..+....+..+ -.+..|+..+. .||++.+|....+|.+..
T Consensus 477 L~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 477 LNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 6666655554422 12445555554 499999999988886543
No 185
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.22 E-value=7.2e-10 Score=109.79 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=133.2
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
.....+.+++|+|+|.+|+.|.+....+... .+..+|||+|..|||||+|+||+-++. +..++.++-++
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3455699999999999999998877765432 345689999999999999999997765 67788998887
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc--cCCCCeEEEEec
Q 007989 300 FVEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAAT 376 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~--~~~~~viVIaaT 376 (582)
+.. +..+++..+.. ..-|||+|++-- ++.+.....|-..+||- ....+|+|.||+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF-------------EEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC-------------CCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 664 44566666543 346999999722 11122333444445543 234589999999
Q ss_pred Cccccccc--------------------cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccc-cHH----HHHHh
Q 007989 377 NRADILDS--------------------ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLD----VIAMR 431 (582)
Q Consensus 377 N~~~~LD~--------------------aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv-dl~----~lA~~ 431 (582)
|+-+.|+. .+--+.||...+.|.+++.++...|+..+++...++-+. .++ ..|..
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~ 261 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT 261 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 98654431 122234999999999999999999999999887765421 122 22333
Q ss_pred CCCCcHHHHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEA 447 (582)
Q Consensus 432 t~G~sgadL~~lv~eA 447 (582)
-.|-||+-.-+.++..
T Consensus 262 rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 262 RGGRSGRVAWQFIRDL 277 (287)
T ss_pred cCCCccHhHHHHHHHH
Confidence 3445665555555443
No 186
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.22 E-value=1e-10 Score=115.20 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=130.4
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEE
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS 294 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----pfi~ 294 (582)
.|++++++..++||+|.++..+.|.-+...-.-| ++++.||||||||+-+.++|+++=. -++.
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 4899999999999999999999988877755544 6999999999999999999998722 3445
Q ss_pred eechhHHHHhhhhhhhHHHH---HHHHHhhCCC----eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 295 ISGSEFVEMFVGVGASRVRD---LFKKAKENAP----CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 295 is~s~~~~~~vG~~~~~vr~---lF~~A~~~~P----~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
+++|+- .+...+|. .|.+-+-.-| .||++||.|.+ ....+|.+..-++.- .
T Consensus 84 LNASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy---S-- 141 (333)
T KOG0991|consen 84 LNASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY---S-- 141 (333)
T ss_pred ccCccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH---c--
Confidence 555542 22233443 4554443322 49999999998 344566666555432 2
Q ss_pred CCeEEEEecCccccccccccCCCCccceeecc-CCCHHHHHHHHHHHc-CCCCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHG-SNKKFDADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~-~Pd~~eR~~Il~~~l-~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
....+..++|..+.+-+.+.+ |+. .+.+. +-|..-..++++..- .+.+. .+..++.+.....| |.++.+|
T Consensus 142 ~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 142 NTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred ccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccc----hHHHHHH
Confidence 234677778888888777777 664 33333 333333333443332 23333 33346777766666 6666666
Q ss_pred HHHHHHHHhCCCccCHHHHHHHH
Q 007989 446 EAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 446 eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
... |...+-..|+.+.+-+.+
T Consensus 214 nLQ--st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 214 NLQ--STVNGFGLVNQENVFKVC 234 (333)
T ss_pred HHH--HHhccccccchhhhhhcc
Confidence 543 333455667766655444
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=2.6e-10 Score=129.17 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=148.1
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-e
Q 007989 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-I 295 (582)
Q Consensus 217 ~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~-i 295 (582)
....|.+++.+.+++|++|+++..++++.++.....+ ....+.++|+||||||||++++.+|++++..+.. .
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 3457889999999999999999999888877654322 2223459999999999999999999988765433 1
Q ss_pred ---echhHH----------HHh--hhhhhhHHHHHHHHHhh----------CCCeEEEEeCCCcccccCCCCCCCCChHH
Q 007989 296 ---SGSEFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (582)
Q Consensus 296 ---s~s~~~----------~~~--vG~~~~~vr~lF~~A~~----------~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 350 (582)
+|.... ..+ +....+.++.++..+.. ....|||||||+.+... .
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~ 211 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------D 211 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------h
Confidence 111000 000 01122334455555431 24579999999987421 1
Q ss_pred HHHHHHHHh-hhcCccCCCCeEEEEecC-ccc--------------cccccccCCCCccceeeccCCCHHHHHHHHHHHc
Q 007989 351 EQTLNQLLT-EMDGFEGNTGIIVIAATN-RAD--------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 351 ~~~L~~LL~-~ld~~~~~~~viVIaaTN-~~~--------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
...+..+|. ... ....+.+|++++ .+. .|.+++++.-|.. +|.|++.....-.+.|+..+
T Consensus 212 ~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 212 TRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHH
Confidence 123344444 111 122333333332 121 1335666422443 78999999988666666555
Q ss_pred CCCC--------CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------hCCCccCHHHHHHHHHHHHcCcc--C
Q 007989 415 SNKK--------FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR-------RGKAAISSKEIDDSIDRIVAGME--G 477 (582)
Q Consensus 415 ~~~~--------l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r-------~~~~~It~~dl~~A~~~v~~g~~--~ 477 (582)
.... +.....+..|+....| |++.+++.....+.+ .+...++..++..+..+...-.. .
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~ 363 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNEN 363 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhH
Confidence 4321 1122346677776555 777777766555432 23345555555555433211000 0
Q ss_pred cc--ccccccchhhHHHHHHHHHHHhhcC
Q 007989 478 TV--MTDGKSKSLVAYHEVGHAICGTLTP 504 (582)
Q Consensus 478 ~~--~~~~~~k~~va~hEaGhalv~~~~~ 504 (582)
.. .....+..+..+|-.|..+......
T Consensus 364 ~~l~~~~~rd~sl~lfhalgkily~Kr~~ 392 (637)
T TIGR00602 364 QEIQALGGKDVSLFLFRALGKILYCKRAT 392 (637)
T ss_pred HHHHhhccccchhHHHHHhChhhcccccC
Confidence 00 1123344567888888888665443
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=1.9e-11 Score=112.43 Aligned_cols=113 Identities=35% Similarity=0.418 Sum_probs=73.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH--Hhhhhhhh-----H-HHHHHHHHhhCCCeEEEEeCCCcccc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGAS-----R-VRDLFKKAKENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~--~~vG~~~~-----~-vr~lF~~A~~~~P~ILfIDEID~l~~ 337 (582)
+|||+||||||||++|+.+|+.++.+++.++++...+ .+.|.-.- . ....+-.+.. .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999999876543 12221100 0 0000001111 4689999999987
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCc-------c-CCC------CeEEEEecCccc----cccccccCCCCc
Q 007989 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 392 (582)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~~ld~~-------~-~~~------~viVIaaTN~~~----~LD~aLlrpgRF 392 (582)
+.+....++.+++.-.-. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 455566666666542111 1 111 489999999988 89999999 87
No 189
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-10 Score=132.94 Aligned_cols=161 Identities=26% Similarity=0.392 Sum_probs=113.1
Q ss_pred cccccchHHHHHHHHHHHH----hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHHHH
Q 007989 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~----l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~~~ 303 (582)
+-|+|++++...+.+.+.. |++|.+ |-...||.||+|+|||-||+++|..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5689999999999998876 444432 223678899999999999999999986 89999999999974
Q ss_pred h-----hhhhhhHH-----HHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc---cC----
Q 007989 304 F-----VGVGASRV-----RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---EG---- 366 (582)
Q Consensus 304 ~-----vG~~~~~v-----r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~---~~---- 366 (582)
+ .|..+..| ..+-+..+++..|||++|||+.- |+. ++|-||+-+|.= .+
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------Hpd---V~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPD---VFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHH---HHHHHHHHhcCCeeecCCCCE
Confidence 2 23222211 23444556666799999999886 444 555566555421 11
Q ss_pred --CCCeEEEEecCccc----------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHc
Q 007989 367 --NTGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 367 --~~~viVIaaTN~~~----------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
-.+.++|.|||--. ...|+++. |+|.+|.|.+.+.+...+|+...+
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 12579999998521 12455555 788788888888877777776654
No 190
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.18 E-value=1.1e-10 Score=128.38 Aligned_cols=208 Identities=21% Similarity=0.347 Sum_probs=133.2
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh--
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~-- 304 (582)
..+++|.++..+++.+.+..+... +..+++.|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 456889988888888777654433 2379999999999999999997753 6799999998764322
Q ss_pred ---hhhhhh-------HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc--c----CCC
Q 007989 305 ---VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E----GNT 368 (582)
Q Consensus 305 ---vG~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~--~----~~~ 368 (582)
.|.... .....|+.+ ..++|||||||.+ +.+.+..+.+++..-... . ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 121100 001122222 3468999999999 445566666666542210 1 123
Q ss_pred CeEEEEecCccc-------cccccccCCCCccceeeccCCCHHHHHHHH----HHHc----CC-----CCCCccccHHHH
Q 007989 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHG----SN-----KKFDADVSLDVI 428 (582)
Q Consensus 369 ~viVIaaTN~~~-------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il----~~~l----~~-----~~l~~dvdl~~l 428 (582)
++.+|++|+..- .+.+.|+. |+. .+.+.+|+..+|.+-+ +.++ .. ..++++.--...
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 578888887531 12223332 332 4678888888876632 2222 11 134455444555
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 429 A~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
+..|+| |.++|+++++.|+..+ ....|+.+|+...+
T Consensus 346 ~~~wpg-NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPG-NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 678999 9999999999999776 34578888887555
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.17 E-value=1.4e-10 Score=111.07 Aligned_cols=122 Identities=28% Similarity=0.397 Sum_probs=84.4
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH-----h
Q 007989 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~-----~ 304 (582)
|+|.+++.+++.+.+..+... +..|||+|++||||+++|+++-... +.||+.++|+.+.+. +
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578899999888888775543 3489999999999999999997754 679999999876542 3
Q ss_pred hhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC--cc----CCCCeE
Q 007989 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FE----GNTGII 371 (582)
Q Consensus 305 vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~--~~----~~~~vi 371 (582)
+|... .....+|+.|..+ +||||||+.+ +...|..|.++|+.-.- .. ...++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 34311 1234788888776 9999999999 56667777777764321 11 123799
Q ss_pred EEEecCc
Q 007989 372 VIAATNR 378 (582)
Q Consensus 372 VIaaTN~ 378 (582)
+|++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 9999985
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=4.3e-11 Score=117.38 Aligned_cols=142 Identities=28% Similarity=0.426 Sum_probs=69.5
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------------------- 288 (582)
.|+||.|++.+|+.+.-.+. | .+++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998886665 2 2489999999999999999998733
Q ss_pred --------CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh
Q 007989 289 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (582)
Q Consensus 289 --------~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ 360 (582)
..||....-+.-....+|.+..-.-..+..|.. .|||+||+-.+ ...+++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 123333332222222333322212223334433 49999999777 34466666665
Q ss_pred hcCc-----------cCCCCeEEEEecCcc-----------------------ccccccccCCCCccceeeccCCCH
Q 007989 361 MDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 361 ld~~-----------~~~~~viVIaaTN~~-----------------------~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
|+.- .-..++++|+|+|.- ..+...|+. |||.++.++..+.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 5421 112368999999851 134555666 7776666655443
No 193
>PRK15115 response regulator GlrR; Provisional
Probab=99.17 E-value=9e-11 Score=128.37 Aligned_cols=206 Identities=24% Similarity=0.409 Sum_probs=129.4
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh---
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--- 305 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v--- 305 (582)
+++|.+.....+.+.+..+... ...++++|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 5677777666666655554332 2269999999999999999997754 68999999987644321
Q ss_pred --hhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----CCCe
Q 007989 306 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (582)
Q Consensus 306 --G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~~----~~~v 370 (582)
|... .....+|+.+. ..+|||||||.+ +.+.+..+..++..-. .... ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAAE---GGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEECC---CCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 1100 00111233332 358999999999 4555666666655321 1111 1268
Q ss_pred EEEEecCccccccccccCCCCccc-------eeeccCCCHHHHHHHH----HHHcCC---------CCCCccccHHHHHH
Q 007989 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTEIL----KVHGSN---------KKFDADVSLDVIAM 430 (582)
Q Consensus 371 iVIaaTN~~~~LD~aLlrpgRFdr-------~I~i~~Pd~~eR~~Il----~~~l~~---------~~l~~dvdl~~lA~ 430 (582)
.+|++|+.. ++..+ ..|+|.. .+.+.+|+..+|.+-+ +.++.. ..++++.--.....
T Consensus 271 rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 271 RIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred EEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 999999853 32222 2234421 5678889999997622 333211 12445554445567
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.|+| |.++|+++++.|+..+ ....|+.+++...+
T Consensus 348 ~Wpg-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 348 SWPG-NVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCC-hHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 7899 9999999999998765 45578888876544
No 194
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.17 E-value=6.1e-10 Score=116.02 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=102.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------------------
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 289 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~--------------------- 289 (582)
++++|.+++...+...+..-. +.|+.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 357777777777766665321 3455799999999999999999999886
Q ss_pred ---CCEEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc
Q 007989 290 ---VPFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (582)
Q Consensus 290 ---~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld 362 (582)
-.++.++.++-...- .....++++-+.... ...-|++|||+|.+ .....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m--------------t~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL--------------TEDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH--------------hHHHHHHHHHHhc
Confidence 355666655433211 123345555444422 23469999999999 2356677887777
Q ss_pred CccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHH
Q 007989 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (582)
Q Consensus 363 ~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~ 411 (582)
. +..+..+|.+||.++.+-+.+.+ |+. .+.|++|+...+....+
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 4 45567888889999999999988 774 67777755544444333
No 195
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.16 E-value=1.3e-10 Score=120.31 Aligned_cols=212 Identities=23% Similarity=0.343 Sum_probs=147.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVE 302 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~ 302 (582)
....|+.+++.+...+.+.+....+..-+. .+||.|.+||||-++||+.-.. ...||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlDA----------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLDA----------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccCC----------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 456799999999888888777665443322 5999999999999999998543 478999999987765
Q ss_pred H-----hhhhh--hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc------CccCCCC
Q 007989 303 M-----FVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GFEGNTG 369 (582)
Q Consensus 303 ~-----~vG~~--~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld------~~~~~~~ 369 (582)
. .+|.. .+.-..+|+.|.++ .+|+|||..+ +...+..+..+|+.-. ..+-.-+
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEEEE
Confidence 3 23332 34556789998776 7999999887 5566777777776310 0111236
Q ss_pred eEEEEecCc--cccccccccCCCCccc--eeeccCCCHHHHHHHH--------HHHcCCC-----CCCccccHHHHHHhC
Q 007989 370 IIVIAATNR--ADILDSALLRPGRFDR--QVTVDVPDIRGRTEIL--------KVHGSNK-----KFDADVSLDVIAMRT 432 (582)
Q Consensus 370 viVIaaTN~--~~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~Il--------~~~l~~~-----~l~~dvdl~~lA~~t 432 (582)
|.||+||.. .+..+..-.|...|.| +..+.+|...+|.+-+ ..+..+. +++++.........|
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~W 414 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAW 414 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCC
Confidence 999999954 4555666666666666 7888999999987632 2222222 344444344445689
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
+| +.++|.|++-+|+... ....++.+++.
T Consensus 415 pG-NVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 415 PG-NVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred Cc-cHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 99 9999999999998776 33445555554
No 196
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.15 E-value=7.2e-10 Score=116.54 Aligned_cols=66 Identities=45% Similarity=0.704 Sum_probs=52.8
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHH
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFV 301 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~ 301 (582)
..+.++|+.++.+..--+++.++..+ --.+++||.||||||||.||-++|+++| +||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 45689999999999998998887653 1346999999999999999999999996 899999998875
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.13 E-value=5.1e-10 Score=121.30 Aligned_cols=144 Identities=24% Similarity=0.401 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----C--EEEee----ch
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----P--FFSIS----GS 298 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----p--fi~is----~s 298 (582)
++++.+.++..+.+...+ .. .++++|+||||||||++|+.+|..+.. + ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---TI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---hc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 677777776666554433 32 237999999999999999999987742 1 22232 23
Q ss_pred hHHHHh--hhhhhh----HHHHHHHHHhhC--CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh-----------
Q 007989 299 EFVEMF--VGVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT----------- 359 (582)
Q Consensus 299 ~~~~~~--vG~~~~----~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~----------- 359 (582)
+|+..+ .+.+-. .+.++...|+.. .|++||||||+.....+- -..+.++++
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki----------FGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV----------FGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHh----------hhhhhhhcccccccccccee
Confidence 444322 111111 234455666543 589999999988632220 011111111
Q ss_pred ----h--hcCccCCCCeEEEEecCccc----cccccccCCCCccceeeccC
Q 007989 360 ----E--MDGFEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 360 ----~--ld~~~~~~~viVIaaTN~~~----~LD~aLlrpgRFdr~I~i~~ 400 (582)
+ .+.+....++.||||+|..+ .+|.||+| ||. .|++.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 1 12345567899999999987 79999999 995 566654
No 198
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.12 E-value=8e-10 Score=122.28 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=130.1
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 289 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~------------------ 289 (582)
..|.++.|...+++.+.-.+ ...+.++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48899999888776543111 1234799999999999999999987431
Q ss_pred ----------CCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh
Q 007989 290 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (582)
Q Consensus 290 ----------~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (582)
.||..-.-+.-....+|.+...-...+..|.++ +|||||++.+ +...+..+.+.++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHHH
Confidence 111111111001122333322233566666555 9999999887 3444455555543
Q ss_pred hhc----C----ccCCCCeEEEEecCccc---------------------cccccccCCCCccceeeccCCCHHH-----
Q 007989 360 EMD----G----FEGNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVTVDVPDIRG----- 405 (582)
Q Consensus 360 ~ld----~----~~~~~~viVIaaTN~~~---------------------~LD~aLlrpgRFdr~I~i~~Pd~~e----- 405 (582)
+-. . .....++.+|+|+|... .+..+++. |||.++.++.|+.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 211 1 01134789999999742 46778888 999999999885321
Q ss_pred -----HHHHHHHH--------cC----CCCCCcc---------c-cHH--HHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 406 -----RTEILKVH--------GS----NKKFDAD---------V-SLD--VIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 406 -----R~~Il~~~--------l~----~~~l~~d---------v-dl~--~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
..++-+.. .+ +..+... . ... .-+...-|.|.+....+++-|...|.-+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 11121100 00 0001100 0 011 112234578999999999999999999999
Q ss_pred CccCHHHHHHHHH
Q 007989 457 AAISSKEIDDSID 469 (582)
Q Consensus 457 ~~It~~dl~~A~~ 469 (582)
+.|+.+|+.+|+.
T Consensus 478 ~~V~~~hv~eAl~ 490 (506)
T PRK09862 478 DIITRQHLQEAVS 490 (506)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999985
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=99.12 E-value=1.3e-09 Score=126.59 Aligned_cols=171 Identities=19% Similarity=0.198 Sum_probs=126.5
Q ss_pred eEEEEc--CCCCcHHHHHHHHHHhc-----CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCC------CeEEEEeCC
Q 007989 266 GVLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEI 332 (582)
Q Consensus 266 gvLL~G--PpGTGKT~LArAlA~e~-----~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~------P~ILfIDEI 332 (582)
.-+..| |++.|||++|+++|+++ +.+++.+++++... ...+|++.+.+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 99999999999999997 56899999987432 235666665543322 369999999
Q ss_pred CcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHH
Q 007989 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~ 412 (582)
|.+ +. ...+.|+..|+. ...++.+|.+||.++.+.+++++ |+ ..+.|++|+.++-...++.
T Consensus 640 D~L-----------t~---~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DAL-----------TQ---DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccC-----------CH---HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 999 22 345666766664 34567899999999999999999 87 4889999999888888887
Q ss_pred HcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007989 413 HGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (582)
Q Consensus 413 ~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A 467 (582)
.+.+..+. ++..+..++..+.| +.+..-++++.++.. ...|+.+++...
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 76554432 34468899999999 888888888766532 235777666544
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=9.3e-10 Score=116.19 Aligned_cols=158 Identities=19% Similarity=0.263 Sum_probs=110.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEeechhHHHHhhhhhhhHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 316 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~s~~~~~~vG~~~~~vr~lF 316 (582)
.+.|+++||+||+|+|||++|+++|+.+.+. ++.+...+- . -..+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 4578899999999999999999999987541 222211000 0 012335677776
Q ss_pred HHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCc
Q 007989 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (582)
Q Consensus 317 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRF 392 (582)
+.+.. ....|++|||+|.+ .....|.||..++. +..++++|.+|+.++.|.|.+++ |+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc
Confidence 66543 33568999999999 23577888888884 44678888999999999999999 88
Q ss_pred cceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHH
Q 007989 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL 444 (582)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv 444 (582)
. .+.|++|+.++-.+.+...... ..+.+...++....| ++.....+.
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l~ 204 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQLH 204 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHHH
Confidence 6 6899999999888888765421 123334556677777 665544443
No 201
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-10 Score=118.14 Aligned_cols=131 Identities=29% Similarity=0.445 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHH----HHhcCchhhhhhcCCCCc-eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhh
Q 007989 232 DVAGVDEAKQDFMEVV----EFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFV 305 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v----~~l~~p~~~~~~g~~~pk-gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~v 305 (582)
=|+|++.+|+.|.-.| .++.+.+ .+-.....+ ++||.||+|+|||+||+.+|+.+++||...++..+.+ .|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~--~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKE--DNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccC--CCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 3688898888664332 1121111 001122333 7999999999999999999999999999999999887 588
Q ss_pred hhhhhHH-HHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 007989 306 GVGASRV-RDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (582)
Q Consensus 306 G~~~~~v-r~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~ 364 (582)
|+.-.++ ..++..| .+....||+|||||.+.++.....-.-+-..+.+...||..++|-
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 8765554 3333332 112246999999999987664322111222334555566666653
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-09 Score=117.61 Aligned_cols=156 Identities=26% Similarity=0.375 Sum_probs=109.2
Q ss_pred HHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe-echhHHHHhhhhhhhHHHHHHHHHhhC
Q 007989 244 MEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFKKAKEN 322 (582)
Q Consensus 244 ~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i-s~s~~~~~~vG~~~~~vr~lF~~A~~~ 322 (582)
..++...++++++ +-..+||+||||+|||.||..+|...+.||+.+ |..+.+.......-..++..|+.|++.
T Consensus 524 ~llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 524 KLLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred HHHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC
Confidence 3455566666543 234899999999999999999999999999975 444444433333345688999999999
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC-CeEEEEecCcccccc-ccccCCCCccceeeccC
Q 007989 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILD-SALLRPGRFDRQVTVDV 400 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~-~viVIaaTN~~~~LD-~aLlrpgRFdr~I~i~~ 400 (582)
.-+||++|+|+.|..-- .-+......++..|+..+...++.. +.+|++||.+.+.|. -.++. .|+..+.+|.
T Consensus 598 ~lsiivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpn 671 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPN 671 (744)
T ss_pred cceEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCc
Confidence 88999999999985332 2345666677777777776655543 578888888776653 34555 7887777765
Q ss_pred CCH-HHHHHHHH
Q 007989 401 PDI-RGRTEILK 411 (582)
Q Consensus 401 Pd~-~eR~~Il~ 411 (582)
-.. ++-.+++.
T Consensus 672 l~~~~~~~~vl~ 683 (744)
T KOG0741|consen 672 LTTGEQLLEVLE 683 (744)
T ss_pred cCchHHHHHHHH
Confidence 443 44444444
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=8.1e-10 Score=117.51 Aligned_cols=213 Identities=27% Similarity=0.429 Sum_probs=132.5
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEe----
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI---- 295 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~i---- 295 (582)
.+.|.-++|++..|..|.-.. -+|+ -.|+|+.|+.|||||+++||+|.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a---v~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA---VDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh---cccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 578999999999998765432 2332 1389999999999999999999965 3332100
Q ss_pred --echh-------------------HHHHhhhhhhhHHH------H------------HHHHHhhCCCeEEEEeCCCccc
Q 007989 296 --SGSE-------------------FVEMFVGVGASRVR------D------------LFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 296 --s~s~-------------------~~~~~vG~~~~~vr------~------------lF~~A~~~~P~ILfIDEID~l~ 336 (582)
.|.+ |+....|.++.++- . ++..|. ..|++|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc-
Confidence 1111 12222333444221 1 122222 259999999888
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhh---------cCc--cCCCCeEEEEecCccc-cccccccCCCCccceeeccCC-CH
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEM---------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DI 403 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~l---------d~~--~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~P-d~ 403 (582)
++ +.++.||+.+ +|+ ....++++|+|+|..+ .|-|.|+. ||...+.+..| +.
T Consensus 157 ----------~d---~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~ 221 (423)
T COG1239 157 ----------DD---HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDL 221 (423)
T ss_pred ----------cH---HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCH
Confidence 33 3455555443 222 2345799999999854 68888888 99999998766 68
Q ss_pred HHHHHHHHHHcCCCCCCcccc-------------------------------HHHHHH-----hCCCCcHHHHHHHHHHH
Q 007989 404 RGRTEILKVHGSNKKFDADVS-------------------------------LDVIAM-----RTPGFSGADLANLLNEA 447 (582)
Q Consensus 404 ~eR~~Il~~~l~~~~l~~dvd-------------------------------l~~lA~-----~t~G~sgadL~~lv~eA 447 (582)
++|.+|.++.+.-. ..++.- ...++. ...| .-+|+ .+++.|
T Consensus 222 ~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a 298 (423)
T COG1239 222 EERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAA 298 (423)
T ss_pred HHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHH
Confidence 88999887654321 111111 111111 1122 22333 556677
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHc
Q 007989 448 AILAGRRGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~~~v~~ 473 (582)
..+|+.+|+..++.+|+++|..-...
T Consensus 299 ~a~aa~~Gr~~v~~~Di~~a~~l~l~ 324 (423)
T COG1239 299 KALAALRGRTEVEEEDIREAAELALL 324 (423)
T ss_pred HHHHHhcCceeeehhhHHHHHhhhhh
Confidence 77888889999999999998876543
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.8e-09 Score=114.17 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=117.5
Q ss_pred ccccccc-chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------------
Q 007989 229 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 291 (582)
Q Consensus 229 ~f~dI~G-~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------------- 291 (582)
.|++|.| ++.+++.+...+.. .+.|+.+||+||+|+||+++|+++|+...++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 88899988877752 3567789999999999999999999986432
Q ss_pred --------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHh
Q 007989 292 --------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (582)
Q Consensus 292 --------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (582)
+.++... .. ..+...+|++.+.+.. ...-|++|||+|.+ .....|.||.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHHH
Confidence 1111110 00 0122456666655432 23459999999998 2346678888
Q ss_pred hhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHH
Q 007989 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGAD 439 (582)
Q Consensus 360 ~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgad 439 (582)
.++. +..++++|.+|+.++.|.|.+++ |+. .+++++|+.++-.+.++.. .+..+ +...++.. .| ++.+
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~~----gi~~~-~~~~l~~~-~g-~~~~ 200 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQEE----GISES-LATLLAGL-TN-SVEE 200 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHHc----CCChH-HHHHHHHH-cC-CHHH
Confidence 8884 44567777788888899999999 774 8899999998887777642 23322 23334433 45 5555
Q ss_pred HHHHHH
Q 007989 440 LANLLN 445 (582)
Q Consensus 440 L~~lv~ 445 (582)
...+.+
T Consensus 201 A~~l~~ 206 (329)
T PRK08058 201 ALALSE 206 (329)
T ss_pred HHHHhc
Confidence 444443
No 205
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.08 E-value=1.3e-10 Score=128.47 Aligned_cols=205 Identities=27% Similarity=0.417 Sum_probs=136.6
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH--hcCCCEEEeechhHHHH-----hhh
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEM-----FVG 306 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~--e~~~pfi~is~s~~~~~-----~vG 306 (582)
++.+...+.+...+..+...+. .+|+.|.|||||-.+||++-. +...||+.++|..+.+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~----------pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDL----------PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCC----------CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 3556666666655555444332 699999999999999999944 45789999999766542 222
Q ss_pred h--------hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh-----cCccCCCCeEEE
Q 007989 307 V--------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DGFEGNTGIIVI 373 (582)
Q Consensus 307 ~--------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l-----d~~~~~~~viVI 373 (582)
. ..+-.+..+++|..+ .+|+|||..+ .-..+..|.+.|.+- .+-...-+|.||
T Consensus 386 y~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi 451 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVI 451 (606)
T ss_pred cCccccccchhccccccceecCCC---ccHHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEE
Confidence 2 223334455555444 8999999887 445566666666652 222223368999
Q ss_pred EecCccccccccccCCCCccc-------eeeccCCCHHHHHH---HH----HHHcC-CCCCCccccHHHHHHhCCCCcHH
Q 007989 374 AATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE---IL----KVHGS-NKKFDADVSLDVIAMRTPGFSGA 438 (582)
Q Consensus 374 aaTN~~~~LD~aLlrpgRFdr-------~I~i~~Pd~~eR~~---Il----~~~l~-~~~l~~dvdl~~lA~~t~G~sga 438 (582)
+||+++= ..|.+.|||-. ...+.+|+..+|.+ .+ +.+.. ...++++.-...++..||| |.+
T Consensus 452 ~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nir 527 (606)
T COG3284 452 AATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIR 527 (606)
T ss_pred eccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHH
Confidence 9998742 35666677654 56778899988876 22 22222 2345566666788999999 999
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 439 DLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
+|.|+++.++..+ ....|...|+...+.
T Consensus 528 el~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 528 ELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred HHHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 9999999998777 444455555555543
No 206
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.07 E-value=4.7e-10 Score=122.40 Aligned_cols=206 Identities=26% Similarity=0.378 Sum_probs=127.5
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHhh---
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV--- 305 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~v--- 305 (582)
.++|.+...+.+.+.+..+... ...++++|++||||+++|+++... .+.||+.++|+.+.+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 4677777777776666554322 347999999999999999999654 467999999986644322
Q ss_pred --hhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--Ccc----CCCCe
Q 007989 306 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GNTGI 370 (582)
Q Consensus 306 --G~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~----~~~~v 370 (582)
|... .....+|..| .+++|||||||.+ +...+..+..++..-. ... ...++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 1110 0001122322 3569999999999 4445555555554321 000 11257
Q ss_pred EEEEecCccccccccccCCCCccc-------eeeccCCCHHHHHH----HHHHHcCC---------CCCCccccHHHHHH
Q 007989 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSN---------KKFDADVSLDVIAM 430 (582)
Q Consensus 371 iVIaaTN~~~~LD~aLlrpgRFdr-------~I~i~~Pd~~eR~~----Il~~~l~~---------~~l~~dvdl~~lA~ 430 (582)
.+|++|+.+- ..+..+|+|.+ .+.+.+|+..+|.+ +++.++.+ ..++++..-.....
T Consensus 276 rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 276 RLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred EEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 7888887632 12223344432 57888999998876 22222221 12444433344456
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.|+| |.++|+++++.|+..+ ....|+.+++...+
T Consensus 353 ~wpg-N~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 353 DWPG-NIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCC-HHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 7899 9999999999998764 44578888876543
No 207
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.3e-10 Score=120.45 Aligned_cols=210 Identities=25% Similarity=0.350 Sum_probs=121.0
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----------------
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 289 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~----------------- 289 (582)
..+|.||.|++.+|+.+.....- .+++|++||||||||++|+-+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 46899999999999988876652 23799999999999999999865320
Q ss_pred ------------CCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 290 ------------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 290 ------------~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
.||..-.-+.-....+|.+..---.-...|. ..|||+||+-.+ ..++|+.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh--------------hHHHHHHH
Confidence 0111110000001111211000000011111 259999999665 34688888
Q ss_pred HhhhcCc-----------cCCCCeEEEEecCcc-----------------------ccccccccCCCCccceeeccCCCH
Q 007989 358 LTEMDGF-----------EGNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 358 L~~ld~~-----------~~~~~viVIaaTN~~-----------------------~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
.+-|+.- .-..++.+++|+|.. +.|...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 7766531 112357889999852 134556777 9999999988764
Q ss_pred HHHH--------------HHHHHH----cCCCCC--Ccc----------------ccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 404 RGRT--------------EILKVH----GSNKKF--DAD----------------VSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 404 ~eR~--------------~Il~~~----l~~~~l--~~d----------------vdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
.++. .+.+.+ .+..++ ... .++-..+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4432 122111 111111 111 1122223334456777777777777
Q ss_pred HHHHHHhCCCccCHHHHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~~ 469 (582)
..+|--++...|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 7777777777777777777763
No 208
>PRK08116 hypothetical protein; Validated
Probab=99.03 E-value=2.2e-09 Score=110.28 Aligned_cols=123 Identities=21% Similarity=0.326 Sum_probs=77.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh----hhhHHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
+.|++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4589999999999999999999975 8899999999887754321 1112233444333 2359999999653
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-ccc----ccccccCCCCc---cceeeccCCCH
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRF---DRQVTVDVPDI 403 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~----LD~aLlrpgRF---dr~I~i~~Pd~ 403 (582)
...++.+..+.+++...- ..+..+|.|||. ++. ++..+.+ |+ ...|.+.-||.
T Consensus 191 --------~~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 --------RDTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 123445555555555431 223457777776 333 4556666 53 22455555554
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.99 E-value=6.2e-09 Score=120.61 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=77.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeechhHHHHhh-hhhhhH-HHHHHHHHhhCCCeEEEEeCCCc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVEMFV-GVGASR-VRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s~~~~~~v-G~~~~~-vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
.-+|||+|+||||||.+|++++.-. |.++..+.+..+....- ..+... -...+..|. ..++||||+|.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcC---CCeEEecchhh
Confidence 3479999999999999999998754 24555555544321100 001000 011122222 24999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhc------Cc--cCCCCeEEEEecCccc-------------cccccccCCCCcc
Q 007989 335 VGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVIAATNRAD-------------ILDSALLRPGRFD 393 (582)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~~ld------~~--~~~~~viVIaaTN~~~-------------~LD~aLlrpgRFd 393 (582)
+ +...+..|.+.+++=. |. .-+..+.||||+|+.. .|+++|++ |||
T Consensus 569 m-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFD 635 (915)
T PTZ00111 569 C-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 635 (915)
T ss_pred C-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhc
Confidence 8 3444445555553211 11 1135789999999742 46899999 999
Q ss_pred cee-eccCCCHHHHHHH
Q 007989 394 RQV-TVDVPDIRGRTEI 409 (582)
Q Consensus 394 r~I-~i~~Pd~~eR~~I 409 (582)
..+ .++.|+.+.=..|
T Consensus 636 LIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLI 652 (915)
T ss_pred EEEEecCCCChHHHHHH
Confidence 854 4577775543343
No 210
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.3e-09 Score=108.02 Aligned_cols=83 Identities=31% Similarity=0.452 Sum_probs=63.0
Q ss_pred eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEecC----ccccccccccCCCCc
Q 007989 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRF 392 (582)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~--------~~~~viVIaaTN----~~~~LD~aLlrpgRF 392 (582)
.|+||||||.++.+.+.+ +++-.++.+...||-.++|.. ....+++||+.. .|..|-|.|.- ||
T Consensus 252 GIvFIDEIDKIa~~~~~g--~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--Rf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSG--GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCC--CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CC
Confidence 599999999998766532 224556677778887777642 234688998873 58888888855 99
Q ss_pred cceeeccCCCHHHHHHHHH
Q 007989 393 DRQVTVDVPDIRGRTEILK 411 (582)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~ 411 (582)
.-++++...+.++-.+||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999988887774
No 211
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.96 E-value=1.1e-09 Score=105.19 Aligned_cols=111 Identities=34% Similarity=0.422 Sum_probs=71.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEeechhHHHHhhhhhhhHHHHHHHHH----hhCCCeEEEEeCCCccc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVG 336 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~----pfi~is~s~~~~~~vG~~~~~vr~lF~~A----~~~~P~ILfIDEID~l~ 336 (582)
..+||.||+|||||.+|+++|..+.. |++.++++++.+. +.....+..++..+ ......||||||||.+.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 36899999999999999999999996 9999999998871 11111112221111 00011299999999996
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCc---------cCCCCeEEEEecCccc
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD 380 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~~---------~~~~~viVIaaTN~~~ 380 (582)
... ..+.+.....+.+.||..+|+- -.-.++++|+|+|.-.
T Consensus 82 ~~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 541 1222334456666777666431 1124689999999744
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.96 E-value=8e-10 Score=102.01 Aligned_cols=127 Identities=28% Similarity=0.490 Sum_probs=82.9
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHHHHhhhhhhh
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 310 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~~~~vG~~~~ 310 (582)
+|.+.+.+++++.+..+.... ..|||+|+|||||+++|+++....+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477888899998888766443 3799999999999999999988664 478877876533
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-c-c-----ccc
Q 007989 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-A-D-----ILD 383 (582)
Q Consensus 311 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~-~-----~LD 383 (582)
.++++.+ .+.+|||+|+|.+ +.+.+..+.+++...+ ..++.+|+++.. + + .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccchh
Confidence 3456655 4459999999999 5566666666666532 345567766653 2 2 345
Q ss_pred ccccCCCCccceeeccCCC
Q 007989 384 SALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd 402 (582)
+.|.. ||. .+.+.+|+
T Consensus 122 ~~L~~--~l~-~~~i~lPp 137 (138)
T PF14532_consen 122 PDLYY--RLS-QLEIHLPP 137 (138)
T ss_dssp HHHHH--HCS-TCEEEE--
T ss_pred HHHHH--HhC-CCEEeCCC
Confidence 55555 554 33444443
No 213
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.95 E-value=1.1e-08 Score=108.38 Aligned_cols=84 Identities=21% Similarity=0.293 Sum_probs=63.9
Q ss_pred ccc-ccccchHHHHHHHHHHHHhcCchhhhhhcCC-CCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEeec--
Q 007989 229 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG-- 297 (582)
Q Consensus 229 ~f~-dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~-~pkgvLL~GPpGTGKT~LArAlA~e~~~-------pfi~is~-- 297 (582)
-|+ |+.|++++++++.+.+.... .|.. ..+.++|+||||||||+||+++|+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 99999999886665554432 1222 3467999999999999999999999976 9999988
Q ss_pred --hhHHHHhhhhhhhHHHHHHHHH
Q 007989 298 --SEFVEMFVGVGASRVRDLFKKA 319 (582)
Q Consensus 298 --s~~~~~~vG~~~~~vr~lF~~A 319 (582)
+.+.+..++..+..+|+.|.+.
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHH
Confidence 7777777777677776666544
No 214
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.93 E-value=5.5e-09 Score=118.70 Aligned_cols=99 Identities=22% Similarity=0.345 Sum_probs=63.4
Q ss_pred CeEEEEecCcc--ccccccccCCCCcc---ceeecc--CCC-HHHHHHHHHHHcC---CC----CCCccccHHHHH---H
Q 007989 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKVHGS---NK----KFDADVSLDVIA---M 430 (582)
Q Consensus 369 ~viVIaaTN~~--~~LD~aLlrpgRFd---r~I~i~--~Pd-~~eR~~Il~~~l~---~~----~l~~dvdl~~lA---~ 430 (582)
++.||+++|+. ..+||+|.. ||. ..++++ .++ .+.+..+++...+ +. .++.+. +..+. .
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA-Va~LI~~~~ 353 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDA-VEEIIREAK 353 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHH-HHHHHHHHH
Confidence 67899999874 567899988 875 334443 222 4445555543332 11 222222 12221 1
Q ss_pred hCCC------CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 431 RTPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 431 ~t~G------~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
+..| ...++|.+++++|...|..+++..|+.+|+.+|+++
T Consensus 354 R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 354 RRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 2222 347899999999999999999999999999988754
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.90 E-value=6.2e-09 Score=99.12 Aligned_cols=133 Identities=21% Similarity=0.337 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------
Q 007989 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------------- 291 (582)
Q Consensus 235 G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p----------------------- 291 (582)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++|..+-+.
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 677778777777752 3567789999999999999999999976331
Q ss_pred EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 292 fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
++.++..+... .-..+.++++.+.+.. ...-|++|||+|.+ .....|.||..|+. +.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcC--CC
Confidence 22222111000 1123556666665532 23569999999999 34567888888874 45
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccC
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~ 400 (582)
.++++|..|+.++.+-|.+++ |+. .+.+++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 678999999999999999999 774 455543
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=3.9e-08 Score=103.59 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=104.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEeechhHHHHhhhhhhhHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLF 316 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~s~~~~~~vG~~~~~vr~lF 316 (582)
.+.|+++||+||+|+||+++|+++|+.+-+. |+.+...+ . ..-+.+.+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHH
Confidence 3567899999999999999999999976431 11111100 0 012345677766
Q ss_pred HHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCc
Q 007989 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (582)
Q Consensus 317 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRF 392 (582)
+.+.. +...|++||++|.+ .....|.||..++. +..++++|.+|+.++.|.|.+++ |+
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC 158 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERL--------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC 158 (325)
T ss_pred HHHhhccccCCceEEEEechhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc
Confidence 65532 33469999999999 24577888888884 56678888899999999999999 88
Q ss_pred cceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHH
Q 007989 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADL 440 (582)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL 440 (582)
. .+.+++|+.++-.+.+..... ..+......+....| ++...
T Consensus 159 ~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g-~p~~A 200 (325)
T PRK06871 159 Q-TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYG-RPLLA 200 (325)
T ss_pred e-EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCC-CHHHH
Confidence 5 789999999888877776432 112224445556666 44433
No 217
>PRK12377 putative replication protein; Provisional
Probab=98.90 E-value=2e-08 Score=102.08 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhhhh--hHHHHHHHHHhhCCCeEEEEeCCCcccccC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~~~--~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 339 (582)
.+++|+||||||||+||.|+|.++ +..+++++..++...+...-. ....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 489999999999999999999876 788899999888875432111 1122344443 345699999997652
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
..+..+..+.++++.-- ....-+|.|||.
T Consensus 177 ------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl 205 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNL 205 (248)
T ss_pred ------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCC
Confidence 24456667777776532 122346777886
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=9.2e-09 Score=109.02 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=97.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------------------------EEeechhHH--------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------------------------FSISGSEFV-------------- 301 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------------------------i~is~s~~~-------------- 301 (582)
.+.|+++||+||+|+||+++|+++|..+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 47889999999999999999999999775421 111110000
Q ss_pred --HH------h-hhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 007989 302 --EM------F-VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (582)
Q Consensus 302 --~~------~-vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~ 368 (582)
+. . -.-+.+.+|++.+.+.. ....|++||++|.+ .....|.||..++ ++..
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCc
Confidence 00 0 00123466777665532 22359999999999 2457788999888 4667
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHH
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~ 413 (582)
++++|.+|+.++.|.|.+++ |+ +.+.|++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 88999999999999999999 88 58999999999988888764
No 219
>PRK08181 transposase; Validated
Probab=98.89 E-value=2.2e-08 Score=102.86 Aligned_cols=98 Identities=20% Similarity=0.314 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh-hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 340 (582)
.+++|+||||||||+||.+++.++ |..+++++..++...+... ........++... .+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~---- 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT---- 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc----
Confidence 489999999999999999998754 7889999999988865322 1122334444433 45699999998862
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
..++....+.++++...+ + + -+|.|||.
T Consensus 181 -----~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~ 208 (269)
T PRK08181 181 -----KDQAETSVLFELISARYE---R-R-SILITANQ 208 (269)
T ss_pred -----CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCC
Confidence 234445667777765432 1 2 36667775
No 220
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.89 E-value=1.8e-08 Score=103.56 Aligned_cols=200 Identities=20% Similarity=0.181 Sum_probs=126.5
Q ss_pred cccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 216 s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
....-|++++++-++.|+++.++....+.+..+.-+.| +.|+|||||||||....+.|..+..|.-+-
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~~~ 93 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHPTT 93 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCCch
Confidence 34455788999999999999999999888775433333 799999999999999999999987761111
Q ss_pred echhHHHHh----hhhhhhH-HHHHHHHHhh-------CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 296 SGSEFVEMF----VGVGASR-VRDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 296 s~s~~~~~~----vG~~~~~-vr~lF~~A~~-------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
+-..+.. .|-..-+ -...|..++. ..+..+++||.|++. ....|+|-..++.
T Consensus 94 --~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek 157 (360)
T KOG0990|consen 94 --SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEK 157 (360)
T ss_pred --hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHH
Confidence 1122211 1111111 1234555543 267799999999982 2334455455655
Q ss_pred ccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcccc-HHHHHHhCCCCcHHHHHH
Q 007989 364 FEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLAN 442 (582)
Q Consensus 364 ~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd-l~~lA~~t~G~sgadL~~ 442 (582)
+..+ +.++.-.|.+..+.|++++ ||.+ +.+.+-+...-...+.++..........+ ...+++. +..|++.
T Consensus 158 ~t~n--~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~ 228 (360)
T KOG0990|consen 158 YTAN--TRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRV 228 (360)
T ss_pred hccc--eEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHH
Confidence 5444 4555667999999999999 8874 45555565566666666665443332211 2233433 4457777
Q ss_pred HHHHHHHHHH
Q 007989 443 LLNEAAILAG 452 (582)
Q Consensus 443 lv~eA~~~A~ 452 (582)
.+|..-..+.
T Consensus 229 a~n~Lqs~~~ 238 (360)
T KOG0990|consen 229 ALNYLQSILK 238 (360)
T ss_pred HHHHHHHHHH
Confidence 7765544443
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.87 E-value=2.8e-08 Score=100.75 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=69.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhhh---hhHHHHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
.+++|+|+||||||+|+.++|.++ +.++++++..++...+.... ......+++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 489999999999999999999987 78999999999887554321 112234555443 45799999998862
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
..+.....+.+++..-- ...-.+|.+||.
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 23455567777776421 223457777885
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=4.3e-08 Score=103.87 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=107.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEE-eechhHHH--------Hh-h----hhhhhHHHHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS-ISGSEFVE--------MF-V----GVGASRVRDLFKKA 319 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------fi~-is~s~~~~--------~~-v----G~~~~~vr~lF~~A 319 (582)
.+.|+++||+||+|+||+++|+++|..+-+. .=. -+|..+.. -. . .-+.+.+|++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4678899999999999999999999976331 000 01111100 00 0 12334667766655
Q ss_pred hh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccce
Q 007989 320 KE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 395 (582)
Q Consensus 320 ~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~ 395 (582)
.. +...|++||++|.+ ..+..|.||..++. +..+.++|..|+.++.|.|.+++ |+. .
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred hhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 32 33469999999999 34577889998884 56678999999999999999999 886 6
Q ss_pred eeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHH
Q 007989 396 VTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANL 443 (582)
Q Consensus 396 I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~l 443 (582)
+.+++|+.++..+.+.... ..+. .....+++...| ++.....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G-~~~~Al~l 204 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAG-APGAALAL 204 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCC-CHHHHHHH
Confidence 8999999888777775431 2222 224556677777 55443333
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=5.7e-08 Score=102.12 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=103.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE----EEeechhHHH-------Hhh-------h------hhhhHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF----FSISGSEFVE-------MFV-------G------VGASRVRDLF 316 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf----i~is~s~~~~-------~~v-------G------~~~~~vr~lF 316 (582)
.+.|+++||+||+|+||+++|.++|..+-+.- -...|-.+.. .++ | .+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 46788999999999999999999998763310 0001111110 000 1 1234567766
Q ss_pred HHHhhC----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCc
Q 007989 317 KKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (582)
Q Consensus 317 ~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRF 392 (582)
+.+... .-.|++||++|.+ .....|.||..++. +..++++|..|+.++.|.|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh
Confidence 655332 2359999999999 24567888888884 44567888888989999999999 88
Q ss_pred cceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHH
Q 007989 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANL 443 (582)
Q Consensus 393 dr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~l 443 (582)
. .+.++.|+.++-.+.+... ..+ ..+...++....| ++.....+
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G-~p~~A~~~ 208 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG-HPGLAAQW 208 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC-CHHHHHHH
Confidence 5 7889999988877777642 222 2223455666666 44433333
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.83 E-value=5.2e-08 Score=108.73 Aligned_cols=195 Identities=17% Similarity=0.258 Sum_probs=129.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEeechhHHHH---h-------hhh------hhhHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVEM---F-------VGV------GASRVRDLFKKA 319 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~s~~~~~---~-------vG~------~~~~vr~lF~~A 319 (582)
.++++|-||||||.+++.+-.++ ..+++.+++-.+.+. | .|. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 58999999999999999997744 356778887655431 1 121 111222333311
Q ss_pred -hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc----cccccCCCCccc
Q 007989 320 -KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL----DSALLRPGRFDR 394 (582)
Q Consensus 320 -~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L----D~aLlrpgRFdr 394 (582)
-...+|||+|||+|.|..+ .|.++..++.... ..+.+++||+..|.-+.. ....-+ |++.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-----------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-----------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-----------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 2345799999999999654 2457777776543 335678888887764422 222323 6555
Q ss_pred -eeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCC--cHHHHHHHHHHHHHHHHHhCC-------CccCHHHH
Q 007989 395 -QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF--SGADLANLLNEAAILAGRRGK-------AAISSKEI 464 (582)
Q Consensus 395 -~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~--sgadL~~lv~eA~~~A~r~~~-------~~It~~dl 464 (582)
.+.|.+.+..+..+|+...+.....-..-..+.+|+.-... +.+....+|++|...|..+.. ..|++.|+
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v 648 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHV 648 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHH
Confidence 88999999999999999988776322222234444433222 556677899999999977765 67899999
Q ss_pred HHHHHHHHcCc
Q 007989 465 DDSIDRIVAGM 475 (582)
Q Consensus 465 ~~A~~~v~~g~ 475 (582)
.+|+..+....
T Consensus 649 ~~Ai~em~~~~ 659 (767)
T KOG1514|consen 649 MEAINEMLASP 659 (767)
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 225
>PRK06526 transposase; Provisional
Probab=98.81 E-value=2e-08 Score=102.48 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=66.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh-hhhHHHHHHHHHhhCCCeEEEEeCCCcccccC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 339 (582)
+.+++|+||||||||+||.+++.++ |..+.++++.++.+..... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~--- 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP--- 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---
Confidence 3489999999999999999998765 7788888888887765322 111223333332 345799999998872
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
...+....+.+++..... +. .+|.+||.+
T Consensus 173 ------~~~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 173 ------FEPEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ------CCHHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 234445567777764321 12 366677764
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.80 E-value=1.7e-07 Score=95.59 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=90.0
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc------------cccccccccCCCC
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~------------~~~LD~aLlrpgR 391 (582)
|.+|||||+|.| +-+.-..+|.-|+. .+ .-++|.|||+ |+-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~----~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DM----APIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--cc----CcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 788888888887 44555666666652 11 1255666664 4456666655 4
Q ss_pred ccceeeccCCCHHHHHHHHHHHcCCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 392 Fdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d-vdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
. ..|...+.+.++.++||+..+......-+ ..++.|......-|.+=--+++..|.+.|.++....++.+|++.+..-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 4 26677788999999999998876543322 224555555444566667789999999999999999999999999875
Q ss_pred HH
Q 007989 471 IV 472 (582)
Q Consensus 471 v~ 472 (582)
.+
T Consensus 429 Fl 430 (454)
T KOG2680|consen 429 FL 430 (454)
T ss_pred Hh
Confidence 54
No 227
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.1e-08 Score=106.46 Aligned_cols=74 Identities=35% Similarity=0.631 Sum_probs=58.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhhhhhh-HHHHHHHHHh----hCCCeEEEEeCCCcccccC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGAS-RVRDLFKKAK----ENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG~~~~-~vr~lF~~A~----~~~P~ILfIDEID~l~~~r 339 (582)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+..+ .+..++..|. +....|+||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998875 57776443 4455555442 2234699999999997443
No 228
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.77 E-value=2.4e-09 Score=97.45 Aligned_cols=111 Identities=32% Similarity=0.415 Sum_probs=57.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech-hHHH-HhhhhhhhHHH-HHHHHHhh-CCCeEEEEeCCCcccccCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE-MFVGVGASRVR-DLFKKAKE-NAPCIVFVDEIDAVGRQRGT 341 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-~~~~-~~vG~~~~~vr-~lF~~A~~-~~P~ILfIDEID~l~~~r~~ 341 (582)
+|||.|+||+|||++|+++|+..+..|..+.+. ++.- ...|...-.-. ..|+..+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999998874 3332 22222100000 00100000 00149999999776
Q ss_pred CCCCCChHHHHHHHHHHhhhcC---------ccCCCCeEEEEecCccc-----cccccccCCCCc
Q 007989 342 GIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD-----ILDSALLRPGRF 392 (582)
Q Consensus 342 ~~~~~~~e~~~~L~~LL~~ld~---------~~~~~~viVIaaTN~~~-----~LD~aLlrpgRF 392 (582)
. ..+...||+.|.. +.-...+.||||.|+.+ .|+++++. ||
T Consensus 75 -----p---pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 -----P---PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----C---HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 2 3344555555432 12234689999999866 67888877 77
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.77 E-value=2.3e-07 Score=93.85 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=124.9
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEE---
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFF--- 293 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi--- 293 (582)
+|.+++.+-+++.+.+.++....|..+...-.-| ++++|||+|+||.+.+-++-+++ |++=.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 5677788889999999999998888776522223 69999999999999999998876 22111
Q ss_pred ---------------EeechhHHH---Hhhhhhh-hHHHHHHHHHhhCCC---------eEEEEeCCCcccccCCCCCCC
Q 007989 294 ---------------SISGSEFVE---MFVGVGA-SRVRDLFKKAKENAP---------CIVFVDEIDAVGRQRGTGIGG 345 (582)
Q Consensus 294 ---------------~is~s~~~~---~~vG~~~-~~vr~lF~~A~~~~P---------~ILfIDEID~l~~~r~~~~~~ 345 (582)
+++....++ .-.|... --+.+++++..+..| .+++|.|.|.|
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---------- 139 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---------- 139 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------
Confidence 111111111 0112211 234666666544333 58899999999
Q ss_pred CChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-cccc
Q 007989 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVS 424 (582)
Q Consensus 346 ~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvd 424 (582)
..+.|..+. ..|+.+. .++.+|..+|....+-+++.+ |+ ..|.++.|+.++-..++...+++..+. ++.-
T Consensus 140 -T~dAQ~aLR---RTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 140 -TRDAQHALR---RTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred -hHHHHHHHH---HHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 334444444 4455443 346777778888888889988 66 368999999999999999888776655 3334
Q ss_pred HHHHHHhCCC
Q 007989 425 LDVIAMRTPG 434 (582)
Q Consensus 425 l~~lA~~t~G 434 (582)
+..+|..+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 6778888776
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=6.5e-08 Score=102.21 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh---hhhHHHHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~---~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
.+++|+||||||||+||.|+|.++ +..+++++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 589999999999999999999986 7899999999988765321 1111122233333 34699999997762
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-ccc----ccccccC
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLR 388 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~----LD~aLlr 388 (582)
..+.....+..+++..- .+ +--+|.|||. ++. +++.+.+
T Consensus 260 -------~t~~~~~~Lf~iin~R~---~~-~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRL---LR-QKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred -------CCHHHHHHHHHHHHHHH---HC-CCCEEEECCCCHHHHHHHHhHHHHH
Confidence 24445556666665432 11 2236666774 333 3455555
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.74 E-value=9.8e-08 Score=93.79 Aligned_cols=184 Identities=24% Similarity=0.300 Sum_probs=96.0
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEeec-hhH----HHHh-
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SEF----VEMF- 304 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~---pfi~is~-s~~----~~~~- 304 (582)
+|.++..+.|.+.+..- ....++|+||+|+|||+|++.+..+..- ..+++++ ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~~------------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 46666666666655421 1337999999999999999999998732 2222221 100 0000
Q ss_pred ------------h-----------------hhhhhHHHHHHHHHhhCC-CeEEEEeCCCccc-ccCCCCCCCCChHHHHH
Q 007989 305 ------------V-----------------GVGASRVRDLFKKAKENA-PCIVFVDEIDAVG-RQRGTGIGGGNDEREQT 353 (582)
Q Consensus 305 ------------v-----------------G~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~-~~r~~~~~~~~~e~~~~ 353 (582)
. ......+..+++...+.. ..||+|||+|.+. .. .+....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------~~~~~~ 140 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------EEDKDF 140 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------TTTHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------cchHHH
Confidence 0 012234566666665443 4899999999995 11 122334
Q ss_pred HHHHHhhhcCccCCCCe-EEEEecCc--ccc---ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-CC-CccccH
Q 007989 354 LNQLLTEMDGFEGNTGI-IVIAATNR--ADI---LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KF-DADVSL 425 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~v-iVIaaTN~--~~~---LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-~l-~~dvdl 425 (582)
+..+...++......++ +|+++++. ... -...+.. |+.. +.+++-+.++..++++...... .+ .++.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 44444444443334444 34444432 111 1223333 7776 9999999999999999876555 11 255667
Q ss_pred HHHHHhCCCCcHHHHHH
Q 007989 426 DVIAMRTPGFSGADLAN 442 (582)
Q Consensus 426 ~~lA~~t~G~sgadL~~ 442 (582)
+.+...+.| .|+-|..
T Consensus 218 ~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 218 EEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp HHHHHHHTT--HHHHHH
T ss_pred HHHHHHhCC-CHHHHhc
Confidence 888888888 6766643
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.73 E-value=1.4e-07 Score=105.23 Aligned_cols=212 Identities=19% Similarity=0.233 Sum_probs=122.4
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 217 ~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
....|++++.+.+.+||+-...-.++++..++.... +....+-+||+||||||||++++.+|++++..+....
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 446799999999999999998777777777664221 2223446889999999999999999999987766542
Q ss_pred c-hhHH------HHhhhhh------hh---HHHHH-HHHHhh-----------CCCeEEEEeCCCcccccCCCCCCCCCh
Q 007989 297 G-SEFV------EMFVGVG------AS---RVRDL-FKKAKE-----------NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (582)
Q Consensus 297 ~-s~~~------~~~vG~~------~~---~vr~l-F~~A~~-----------~~P~ILfIDEID~l~~~r~~~~~~~~~ 348 (582)
. ..+. ..+.+.. .. ...++ +..++. ..+.||+|||+-.+.... ..
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HH
Confidence 1 1110 0111100 01 11221 111111 246799999998764211 12
Q ss_pred HHHHHHHHHHhhhcCccCCC-CeEEEEec-------Ccc--------ccccccccCCCCccceeeccCCCHHHHHHHHHH
Q 007989 349 EREQTLNQLLTEMDGFEGNT-GIIVIAAT-------NRA--------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 349 e~~~~L~~LL~~ld~~~~~~-~viVIaaT-------N~~--------~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~ 412 (582)
.....+.+++.. ... .+|+|.+- |.. ..+++.++...++. +|.|.+-...--.+.|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHH
Confidence 233333333331 222 56666661 111 13455565533443 678877666544444433
Q ss_pred HcCCC--------CCCccc-cHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 413 HGSNK--------KFDADV-SLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 413 ~l~~~--------~l~~dv-dl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
.+... ...... .++.|+..+.| ||+.+++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 32211 122222 26777776655 99999999888886
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.73 E-value=1.2e-07 Score=99.30 Aligned_cols=100 Identities=25% Similarity=0.308 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh-hhhHHHHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
..+|++|+||+|||||+||.|+|.++ |.++.+++.++|...+... ....+.+.++..+ ...+|+|||+.+-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35799999999999999999999987 8899999998887654322 1122344555443 34699999997651
Q ss_pred CCCCCCCCChHHH-HHHHHHHhh-hcCccCCCCeEEEEecCc
Q 007989 339 RGTGIGGGNDERE-QTLNQLLTE-MDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 339 r~~~~~~~~~e~~-~~L~~LL~~-ld~~~~~~~viVIaaTN~ 378 (582)
..++.. ..+..++.. +. .+...|.|||.
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl 260 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNF 260 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCC
Confidence 123322 455555542 22 23467888886
No 234
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.6e-07 Score=97.10 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=93.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------EEEeechhHHHHhhhhhhhHHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-----------------------fi~is~s~~~~~~vG~~~~~vr~lF~ 317 (582)
.+.|+++||+||.|+||+.+|+++|..+-+. |+.+...+ ..+ .-+.+.+|++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHH
Confidence 4678899999999999999999999976331 22221110 000 012345666655
Q ss_pred HHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCcc
Q 007989 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (582)
Q Consensus 318 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFd 393 (582)
.+.. +...|++||++|.+ .....|.||..++. +..++++|..|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce
Confidence 5432 22469999999999 24577888988884 55678899999999999999999 885
Q ss_pred ceeeccCCCHHHHHHHHHH
Q 007989 394 RQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 394 r~I~i~~Pd~~eR~~Il~~ 412 (582)
.+.+++|+.++..+.+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eEeCCCCCHHHHHHHHHH
Confidence 789999999888877764
No 235
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.72 E-value=6.4e-08 Score=109.30 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHHHHhhhhhh---------h-HHHHHHHHHhhCCCeEEEEeCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA---------S-RVRDLFKKAKENAPCIVFVDEI 332 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~~~~vG~~~---------~-~vr~lF~~A~~~~P~ILfIDEI 332 (582)
.||+|.|++||+||+++++++.-+. .||..+..+--.+..+|... . --..++..|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 4899999999999999999999864 58887766554555555431 0 11223333322 49999999
Q ss_pred CcccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCcc---ccccccccCCCCccceeec
Q 007989 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTV 398 (582)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-----------~~~~~viVIaaTN~~---~~LD~aLlrpgRFdr~I~i 398 (582)
..+ ...++..|++-|+.- .-...+++|++.|.. +.|.++++. ||+.++.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 887 234667777766521 123468899975532 458899999 99999999
Q ss_pred cCCCHHHHH-------HHHH--HHcCCCCCCccccHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007989 399 DVPDIRGRT-------EILK--VHGSNKKFDADVSLDVIAMR--TPGF-SGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (582)
Q Consensus 399 ~~Pd~~eR~-------~Il~--~~l~~~~l~~dvdl~~lA~~--t~G~-sgadL~~lv~eA~~~A~r~~~~~It~~dl~~ 466 (582)
+.|+..+.. +|.+ ..+.+..+.++ .++.++.. .-|. |.+--..+++-|..+|..+|+..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 988755421 2332 22333333322 23333221 2344 6777789999999999999999999999999
Q ss_pred HHHHHHc
Q 007989 467 SIDRIVA 473 (582)
Q Consensus 467 A~~~v~~ 473 (582)
|+.-++.
T Consensus 246 Aa~lvL~ 252 (584)
T PRK13406 246 AARLVLA 252 (584)
T ss_pred HHHHHHH
Confidence 9987763
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.68 E-value=1.6e-07 Score=96.11 Aligned_cols=99 Identities=23% Similarity=0.361 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHhhhh-hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 340 (582)
.+++|+||||||||+||.+++.+ .|..+.++++.++...+... ....+...|... ...+++++|||++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~---- 177 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP---- 177 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC----
Confidence 47999999999999999999765 47788888988887554321 122344455543 2456799999998762
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
.+.+....+.+++..... +. -+|.|||.
T Consensus 178 -----~~~~~~~~lf~li~~r~~---~~--s~iiTsn~ 205 (259)
T PRK09183 178 -----FSQEEANLFFQVIAKRYE---KG--SMILTSNL 205 (259)
T ss_pred -----CChHHHHHHHHHHHHHHh---cC--cEEEecCC
Confidence 123334456666654321 22 25667776
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.9e-07 Score=94.02 Aligned_cols=70 Identities=27% Similarity=0.485 Sum_probs=51.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhhhhh-HHHHHHHH-HhhCCCeEEEEeCCCcc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGAS-RVRDLFKK-AKENAPCIVFVDEIDAV 335 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~~~~-~vr~lF~~-A~~~~P~ILfIDEID~l 335 (582)
+.+++|+||||||||+||-|++.++ |.++++++..+++...-..-.. .....+.. .+ ...+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 4589999999999999999998876 8999999999998765332221 12222222 22 3459999999775
No 238
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=2.5e-07 Score=84.26 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~ 342 (582)
+.++|+||+|+|||++++.++.+.. -.++++++.+.......... +.+.+.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 3689999999999999999998876 78888988776553211111 223333322235679999999998
Q ss_pred CCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc----cccccCCCCccceeeccCCCHHH
Q 007989 343 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL----DSALLRPGRFDRQVTVDVPDIRG 405 (582)
Q Consensus 343 ~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L----D~aLlrpgRFdr~I~i~~Pd~~e 405 (582)
+.....+..+...- .++-+|.|+.....+ ...+ +||.. .+++.+.+..|
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 13455666666521 233333333322222 2333 45765 67777777654
No 239
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=8.5e-07 Score=95.44 Aligned_cols=224 Identities=19% Similarity=0.210 Sum_probs=142.6
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEeechhHHH--
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFVE-- 302 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~s~~~~-- 302 (582)
-..+.|.+..+..+++++..... ..-+..+.+.|-||||||.+..-+-... . ...++++|.++.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35678888888888888765333 2346689999999999999888664432 2 2447888875432
Q ss_pred --------Hh----hhhhh-hHHHHHHHHH-hhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 303 --------MF----VGVGA-SRVRDLFKKA-KEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 303 --------~~----vG~~~-~~vr~lF~~A-~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
.+ .+.+. ......|+.- .+. .+-++++||+|.|+.+. +.++..+. ++.. -.+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lF-ewp~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLF-EWPK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeeh-hccc-CCc
Confidence 11 11111 2223344433 233 36799999999997332 12333333 2332 235
Q ss_pred CCeEEEEecCccccccccccC----CCCccceeeccCCCHHHHHHHHHHHcCCCCCCccc--cHHHHHHhCCCCcH--HH
Q 007989 368 TGIIVIAATNRADILDSALLR----PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSG--AD 439 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlr----pgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv--dl~~lA~~t~G~sg--ad 439 (582)
..+++|+..|..+.-|..|-| -+.-...+.|++++.++-.+|+...+......... .++..|+...|.|| +.
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRk 367 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRK 367 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHH
Confidence 679999999987766655543 12233488999999999999999998877655433 36778888887554 33
Q ss_pred HHHHHHHHHHHHHHhCCC----------------ccCHHHHHHHHHHHHcC
Q 007989 440 LANLLNEAAILAGRRGKA----------------AISSKEIDDSIDRIVAG 474 (582)
Q Consensus 440 L~~lv~eA~~~A~r~~~~----------------~It~~dl~~A~~~v~~g 474 (582)
+-.+|+.|..+|..+.+. .|..+++..++.++...
T Consensus 368 aLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 445677777777665432 24456666666655443
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.58 E-value=1.5e-07 Score=91.11 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=62.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh-hhhHHHHHHHHHhhCCCeEEEEeCCCcccccC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 339 (582)
..+++|+||||||||+||.+++.++ |.++.+++.+++.+.+... ........++.... +.+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~---- 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE---- 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee----
Confidence 4599999999999999999998865 8899999999998865332 11223445555443 358999999654
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
...++....+.+++..-- .+ + -.|.|||.
T Consensus 121 -----~~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 -----PLSEWEAELLFEIIDERY---ER-K-PTIITSNL 149 (178)
T ss_dssp --------HHHHHCTHHHHHHHH---HT---EEEEEESS
T ss_pred -----eecccccccchhhhhHhh---cc-c-CeEeeCCC
Confidence 123344455555555432 12 2 35558886
No 241
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.5e-07 Score=105.24 Aligned_cols=131 Identities=27% Similarity=0.316 Sum_probs=91.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-----
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----- 302 (582)
+.|+|++++...+-+.+..-+..-. . . +++-.++|.||.|+|||-||+++|... .-.|+.+++++|.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~-~-~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK-D-P--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC-C-C--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4688999999999888876443110 0 0 345679999999999999999999977 56899999998776
Q ss_pred ----HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc---Cc---cCCCCeEE
Q 007989 303 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---GF---EGNTGIIV 372 (582)
Q Consensus 303 ----~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld---~~---~~~~~viV 372 (582)
.|+|. .....+.+..++...|||+|||||.- +......+.|++..-. +. ..-.++||
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 12222 23446677777777799999999986 4444444445544321 11 01236899
Q ss_pred EEecCc
Q 007989 373 IAATNR 378 (582)
Q Consensus 373 IaaTN~ 378 (582)
|.|+|.
T Consensus 705 IMTsn~ 710 (898)
T KOG1051|consen 705 IMTSNV 710 (898)
T ss_pred EEeccc
Confidence 999986
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=5.5e-07 Score=92.56 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=62.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCc-cccc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-VGRQ 338 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~-l~~~ 338 (582)
..+++|+||||||||+|+.|+|.++ +..+++++..++...+... .......++.. ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 4589999999999999999999875 6788899887776543221 11122223332 2346999999954 2111
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
. ...++....+..+++..-. +.. .+|.|||.
T Consensus 194 e-----~~t~~~~~~lf~iin~R~~---~~k-~tIitsn~ 224 (266)
T PRK06921 194 P-----RATEWQIEQMYSVLNYRYL---NHK-PILISSEL 224 (266)
T ss_pred c-----cCCHHHHHHHHHHHHHHHH---CCC-CEEEECCC
Confidence 1 1133444456666654321 112 24556765
No 243
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.56 E-value=2.9e-07 Score=104.50 Aligned_cols=189 Identities=28% Similarity=0.342 Sum_probs=113.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHH--H---HH---hhCCCeEEEEeCCCccc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLF--K---KA---KENAPCIVFVDEIDAVG 336 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF--~---~A---~~~~P~ILfIDEID~l~ 336 (582)
-++||.|.||||||.|.+.+++-+..-++. ++.. +.-+|.++..+++-+ + +| --..+.|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkg--ss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm- 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKG--SSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM- 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEE-cccc--ccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-
Confidence 379999999999999999999887554432 2211 011233333333322 1 11 0123569999999998
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------CCCCeEEEEecCccc-------------cccccccCCCCc
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD-------------ILDSALLRPGRF 392 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~~~-----------~~~~viVIaaTN~~~-------------~LD~aLlrpgRF 392 (582)
+++ ..+.+.+.|+.-. -+...-|+||+|+.. .|+++|++ ||
T Consensus 396 ----------~~~---dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RF 460 (682)
T COG1241 396 ----------NEE---DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RF 460 (682)
T ss_pred ----------ChH---HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hC
Confidence 222 2334444443210 122356888888754 57889999 99
Q ss_pred cceeec-cCCCHHHHHH----HHHHHcCCC---------------------------------CCCccccHHHHH-----
Q 007989 393 DRQVTV-DVPDIRGRTE----ILKVHGSNK---------------------------------KFDADVSLDVIA----- 429 (582)
Q Consensus 393 dr~I~i-~~Pd~~eR~~----Il~~~l~~~---------------------------------~l~~dvdl~~lA----- 429 (582)
|..+.+ +-||.+.=.. ++..|.... +.-.+...+.|.
T Consensus 461 DLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~ 540 (682)
T COG1241 461 DLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVE 540 (682)
T ss_pred CeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHH
Confidence 985444 5666543222 444442110 000111111111
Q ss_pred Hh----------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 430 MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 430 ~~----------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
.+ +--.|.++|+.+++-|-..|..+-+..|+.+|+++|++-+.
T Consensus 541 ~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 541 MRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred hhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 11 11268899999999999999999999999999999997655
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=6.1e-07 Score=94.78 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=90.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------------------CEEEeechhHHHHhhh-----hhhh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------------------PFFSISGSEFVEMFVG-----VGAS 310 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-------------------------pfi~is~s~~~~~~vG-----~~~~ 310 (582)
.+.|.++||+||+|+|||++|+++|+.+.+ .|++++...-. .-.| -+.+
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 377889999999999999999999997643 12222221000 0001 1345
Q ss_pred HHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccc
Q 007989 311 RVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (582)
Q Consensus 311 ~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aL 386 (582)
.+|++.+.+.. ....|++||++|.+ +.+ ..+.++..++... .++.+|.+|+.++.+.+.+
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~---a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQ---AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhC-----------CHH---HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHH
Confidence 67887776643 23469999999998 333 4455555555433 3466777888888999999
Q ss_pred cCCCCccceeeccCCCHHHHHHHHHH
Q 007989 387 LRPGRFDRQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 387 lrpgRFdr~I~i~~Pd~~eR~~Il~~ 412 (582)
.+ |+ +.+.|++|+.++..+.+..
T Consensus 161 ~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 161 KS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 77 4788999999887777754
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.49 E-value=5.7e-08 Score=102.88 Aligned_cols=218 Identities=23% Similarity=0.274 Sum_probs=113.3
Q ss_pred cccccchHHHHHHHHHH-HHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhh
Q 007989 231 DDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v-~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~ 309 (582)
-+|.|.+.+|..+.=.+ .-...... .....+-.-++||+|.||||||.|.+.++.-+... +++++..-.. .|.++
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~--~gLta 99 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA--AGLTA 99 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC--CCCCE
T ss_pred CcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc--CCccc
Confidence 35788888887554211 11110000 00001223379999999999999999887654332 3344322110 00000
Q ss_pred h----------HH-HHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------cCC
Q 007989 310 S----------RV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGN 367 (582)
Q Consensus 310 ~----------~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-----------~~~ 367 (582)
. .+ ...+-.|.+ .|++|||+|.+ .++ ....|++.|+.- .-+
T Consensus 100 ~~~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----------~~~---~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 100 SVSRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----------KED---DRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp EECCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------------CH---HHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eeccccccceeEEeCCchhcccC---ceeeecccccc-----------cch---HHHHHHHHHHcCeeccchhhhccccc
Confidence 0 00 123334434 49999999998 222 234455555431 012
Q ss_pred CCeEEEEecCccc-------------cccccccCCCCccceeec-cCCCHHHHHHHHHHHcCCC----------------
Q 007989 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNK---------------- 417 (582)
Q Consensus 368 ~~viVIaaTN~~~-------------~LD~aLlrpgRFdr~I~i-~~Pd~~eR~~Il~~~l~~~---------------- 417 (582)
...-|+||+|+.. .+++.|++ |||..+.+ +.|+.+.-..+.++.+...
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 3568999999754 47889999 99987654 6777555545444333221
Q ss_pred CCCcccc-------------------HHHHHH-------------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 418 KFDADVS-------------------LDVIAM-------------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 418 ~l~~dvd-------------------l~~lA~-------------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
.++.+.- .+.|.. .....+.+.|+.+++-|...|.-+-+..|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 1111110 111111 01235778899999999999999999999999999
Q ss_pred HHHHHH
Q 007989 466 DSIDRI 471 (582)
Q Consensus 466 ~A~~~v 471 (582)
.|++-+
T Consensus 321 ~Ai~L~ 326 (331)
T PF00493_consen 321 EAIRLF 326 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 246
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.47 E-value=8.5e-07 Score=98.12 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=128.7
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcC--CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhh
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA--RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~--~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG 306 (582)
-|..|.|.+.+|.-+.-.+ +---.++..-|. +-.-+|+++|.||||||-+.+++++-+-..++ +++..-. -.|
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSS--aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASS--AAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccc--ccc
Confidence 4678899999998765333 222222222122 22237999999999999999999987654443 3332110 012
Q ss_pred hhhhHHHH------HHHHH--hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------cCC
Q 007989 307 VGASRVRD------LFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGN 367 (582)
Q Consensus 307 ~~~~~vr~------lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-----------~~~ 367 (582)
.++.-+++ .++.- .-....|-+|||+|.+.. ..++ .+++.|+.- .-+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-----------~dqv---AihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-----------KDQV---AIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh-----------HhHH---HHHHHHHhheehheecceEEeec
Confidence 22221111 01100 001235889999999931 1122 334444321 012
Q ss_pred CCeEEEEecCccc-------------cccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCCCC---------------
Q 007989 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK--------------- 418 (582)
Q Consensus 368 ~~viVIaaTN~~~-------------~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~~~--------------- 418 (582)
.+--||||+|+.. .+++++++ |||. -|-++-|+...=..|-++.+..+.
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2345889998643 57899999 9998 345577776655554443332111
Q ss_pred ---------------CCccc--c----HHHHHH--------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007989 419 ---------------FDADV--S----LDVIAM--------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 419 ---------------l~~dv--d----l~~lA~--------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~ 469 (582)
+..+. . ...+-. .+-+.+.++|+.+++-+-..|.-+-+..||.+|+++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 00000 0 001110 122578999999999999999989999999999999987
Q ss_pred HHH
Q 007989 470 RIV 472 (582)
Q Consensus 470 ~v~ 472 (582)
-+.
T Consensus 642 Llk 644 (764)
T KOG0480|consen 642 LLK 644 (764)
T ss_pred HHH
Confidence 543
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=4.9e-07 Score=81.57 Aligned_cols=97 Identities=21% Similarity=0.374 Sum_probs=58.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeechhHHH------Hh---hh------hhhhHHHHH-HHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFVE------MF---VG------VGASRVRDL-FKKAK 320 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~s~~~~------~~---vG------~~~~~vr~l-F~~A~ 320 (582)
+.++++||||+|||++++.++... ..+++.+++..... .. .+ .....+.+. .+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999977 78888888765441 11 11 112222233 33334
Q ss_pred hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
.....+|+|||+|.+. ....++.|...++ ..+-.++++++.
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4444599999999982 1445666655444 223345555544
No 248
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.43 E-value=1.5e-06 Score=89.63 Aligned_cols=163 Identities=20% Similarity=0.323 Sum_probs=80.1
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-C--EEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-p--fi~is~s~~~~~ 303 (582)
++.|.++.=.-..-.....+++.+-.. .+++||+||+|||||.+++.+-.+..- . ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSN----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHC----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHc----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 455555544433333444455543222 237999999999999999988765532 2 22344433221
Q ss_pred hhhhhhhHHHHHHHHH-----------hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC------
Q 007989 304 FVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------ 366 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A-----------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~------ 366 (582)
+..+..+++.. ..+..+|+||||+..-....- +....-+.+.|+++.- |+-.
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y-----gtq~~iElLRQ~i~~~-g~yd~~~~~~ 143 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY-----GTQPPIELLRQLIDYG-GFYDRKKLEW 143 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT-----S--HHHHHHHHHHHCS-EEECTTTTEE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC-----CCcCHHHHHHHHHHhc-CcccCCCcEE
Confidence 12222222211 113347999999977532211 1111223444444421 2211
Q ss_pred --CCCeEEEEecCccc---cccccccCCCCccceeeccCCCHHHHHHHHHHHc
Q 007989 367 --NTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 367 --~~~viVIaaTN~~~---~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
-.++.+|||+|.+. .+++.++| .|. .+.++.|+.+....|+...+
T Consensus 144 ~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 144 KSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp EEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHH
T ss_pred EEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHH
Confidence 13678889988632 46777777 663 78899999998888776554
No 249
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.41 E-value=4e-06 Score=93.54 Aligned_cols=222 Identities=22% Similarity=0.275 Sum_probs=116.8
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhh
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 310 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g-~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~ 310 (582)
.|.|+|.+|+.+.-.+--=++. .+...| .+---+|||+|.||||||.+.+.+++-+..-. +.|+-.- .-+|.++-
T Consensus 430 sIye~edvKkglLLqLfGGt~k-~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkGs--SavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRK-EDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKGS--SAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcc-cccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCcc--chhcceee
Confidence 4566666666554333211111 112222 12223799999999999999999998764332 2333110 00111111
Q ss_pred -----HHHHHHHHHh---hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc------Cc--cCCCCeEEEE
Q 007989 311 -----RVRDLFKKAK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVIA 374 (582)
Q Consensus 311 -----~vr~lF~~A~---~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld------~~--~~~~~viVIa 374 (582)
.-+++.-+.- -....|.+|||+|.+ ++....+|.+.+++=. |+ .-+...-|||
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 1111111110 012358889999999 3333444444443311 11 1133456899
Q ss_pred ecCccc-------------cccccccCCCCcccee-eccCCCHHHHHHHHH----HHcCCCC------------------
Q 007989 375 ATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILK----VHGSNKK------------------ 418 (582)
Q Consensus 375 aTN~~~-------------~LD~aLlrpgRFdr~I-~i~~Pd~~eR~~Il~----~~l~~~~------------------ 418 (582)
+.|+.+ .|+|.|++ |||.++ -++.||...=+.+-. .|.....
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~y 652 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRY 652 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHH
Confidence 999532 57899999 999744 457787663223222 2222110
Q ss_pred --------CCccccHHHHHH----h----CCC---CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 419 --------FDADVSLDVIAM----R----TPG---FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 419 --------l~~dvdl~~lA~----~----t~G---~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
+.++.....++. + ..| -++++++.+.+.+..+|..+....+...|+++|+.-
T Consensus 653 Ark~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 653 ARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred HhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 111111111110 0 011 366788888888888888888888888888888753
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.40 E-value=3.8e-06 Score=91.97 Aligned_cols=211 Identities=16% Similarity=0.218 Sum_probs=111.7
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHH--hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~--l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
...|+++..+-+.+|++=...-..++++.+.. ...|. +| .+-+||+||+|||||+.++.++.++|..++..
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 35688888889999998765544444444431 11121 11 23589999999999999999999999877765
Q ss_pred ec-------------hhHHHHhhhhhhhHHHHHHHHH------------hhCCCeEEEEeCCCcccccCCCCCCCCChHH
Q 007989 296 SG-------------SEFVEMFVGVGASRVRDLFKKA------------KENAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (582)
Q Consensus 296 s~-------------s~~~~~~vG~~~~~vr~lF~~A------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~ 350 (582)
+- +.+........-.......+.+ ...++.+|+|||+-...... .
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----------~ 211 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----------D 211 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----------h
Confidence 41 1111111111111222222222 12346799999997774221 2
Q ss_pred HHHHHHHHhhhcCccCCCCeEEEEe-cCccccccccccCC------CCccceeeccCCCHHHHHHHHHHHcCC-------
Q 007989 351 EQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSALLRP------GRFDRQVTVDVPDIRGRTEILKVHGSN------- 416 (582)
Q Consensus 351 ~~~L~~LL~~ld~~~~~~~viVIaa-TN~~~~LD~aLlrp------gRFdr~I~i~~Pd~~eR~~Il~~~l~~------- 416 (582)
...+..+|.+.-.....+ +|+|.| .+.++..++..+.+ .|.+ .|.|.+-...--++.|+..+..
T Consensus 212 ~~~f~evL~~y~s~g~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~ 289 (634)
T KOG1970|consen 212 SETFREVLRLYVSIGRCP-LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSG 289 (634)
T ss_pred HHHHHHHHHHHHhcCCCc-EEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccC
Confidence 223333333332222223 333332 23334333333221 1443 5677666655445544443321
Q ss_pred CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 417 KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 417 ~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
.++.....++.++... ++||+..++...+.+
T Consensus 290 ~k~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 290 IKVPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred CcCchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 1122333455555544 459999999988876
No 251
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.39 E-value=8.4e-06 Score=82.12 Aligned_cols=184 Identities=22% Similarity=0.246 Sum_probs=117.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CCEEEee-----chhHHHHhhhh------------hhhHHHHHHHHHhh-CCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-----GSEFVEMFVGV------------GASRVRDLFKKAKE-NAP 324 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is-----~s~~~~~~vG~------------~~~~vr~lF~~A~~-~~P 324 (582)
-+.++|+-|+|||.+.||+....+ +-.++++ .+.+.+.++-+ ....-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 378899999999999998766553 2233343 23333332221 11222344444444 456
Q ss_pred eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCC------CCccceeec
Q 007989 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP------GRFDRQVTV 398 (582)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrp------gRFdr~I~i 398 (582)
-++++||.+.+. ...-..+..|.+.-++....-++++++-.. |.+.++.| -|++-.|++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 899999999982 233334444444333333334566666442 22222211 177766888
Q ss_pred cCCCHHHHHHHHHHHcCCCCCC----ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 399 DVPDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~~l~~~~l~----~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
++.+.++-...++.+++..... .+..+..+...+.| .++-+.++|..|...|...|+..|+...++
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 8888888888999888765433 33346778888888 789999999999999999999988877654
No 252
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.38 E-value=1.5e-06 Score=93.11 Aligned_cols=141 Identities=20% Similarity=0.288 Sum_probs=81.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEeechhHHHHhhhh------hhhHHHHHHHHHhhCCCeEEEEeCCC
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVGV------GASRVRDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-pfi~is~s~~~~~~vG~------~~~~vr~lF~~A~~~~P~ILfIDEID 333 (582)
...|+|++||||+|+|||+|.-.+...+.. .-..+.-.+|....-.. ...-+..+.+...+ ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457899999999999999999999887644 11222323443321100 11122223222222 22499999997
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-cccccccccCCCCccceeeccCCCHHHHHHHHHH
Q 007989 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~ 412 (582)
.- +-.....+..|+..+- ..++++|+|+|+ |+.|-+. .+.+.... | -.++|+.
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~-----gl~r~~Fl--p----~I~~l~~ 191 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKN-----GLQRERFL--P----FIDLLKR 191 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCC-----cccHHHHH--H----HHHHHHh
Confidence 64 2223456677777653 468999999997 4443322 23222222 1 1356666
Q ss_pred HcCCCCCCccccHHHH
Q 007989 413 HGSNKKFDADVSLDVI 428 (582)
Q Consensus 413 ~l~~~~l~~dvdl~~l 428 (582)
++.-..++...|....
T Consensus 192 ~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRR 207 (362)
T ss_pred ceEEEEecCCCchhhh
Confidence 6666666666665543
No 253
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.38 E-value=3.5e-07 Score=79.90 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCccccHHHHHHHHhcCCeeEEEEeeCceE--------EEEEecCccCCCc
Q 007989 64 FLKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNR 134 (582)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~ 134 (582)
+++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... .............
T Consensus 1 ~~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (110)
T PF06480_consen 1 IILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKY 76 (110)
T ss_dssp ------------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-ST
T ss_pred CcceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCcc
Confidence 3578888877777776653 21 234667899999999999999999999876544 1111112111122
Q ss_pred eeEEEEEcCC---CcHHHHHHHHhcCcceeec
Q 007989 135 VQRVRVQLPG---LSQELLQKFREKNIDFAAH 163 (582)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 163 (582)
........+. ..+.+.+.+.++|+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 77 TTFYTPSIPSVDSFDEFLIEALVEKGVKYESV 108 (110)
T ss_dssp T--EEEE-S-HHHHHHHHHHHHHHTT--TTT-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHCCCcccee
Confidence 2222223221 1245667777788776554
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=2.3e-06 Score=79.07 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=63.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh----------------------hh-hhh-HHHHHHHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GV-GAS-RVRDLFKKA 319 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v----------------------G~-~~~-~vr~lF~~A 319 (582)
++|+||||+|||+++..++..+ +.+++++++........ .. ... ..+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 67788887654332110 00 000 111224455
Q ss_pred hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
....|.+++|||+..+.........+........+..++..+. ..++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6677889999999988543211001112233344555554443 34556666665443
No 255
>PF05729 NACHT: NACHT domain
Probab=98.30 E-value=1e-05 Score=75.30 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=73.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc------C--CC-EEEeechhHHHH---------h---hhhhhhHHHHH-HHHHhhCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA------G--VP-FFSISGSEFVEM---------F---VGVGASRVRDL-FKKAKENA 323 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~------~--~p-fi~is~s~~~~~---------~---vG~~~~~vr~l-F~~A~~~~ 323 (582)
-++|+|+||+|||++++.++... + .+ ++++++.++... . ........... ........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999998754 1 12 234444433321 0 01111112221 22334556
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCH
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
+.+|+||.+|.+...... .........+.+++.. ....+..++|.+.+.....+...+.. . ..+.++.-+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCH
Confidence 789999999999532211 0001122233333332 01222333333332222222222222 1 4678888899
Q ss_pred HHHHHHHHHHcCC
Q 007989 404 RGRTEILKVHGSN 416 (582)
Q Consensus 404 ~eR~~Il~~~l~~ 416 (582)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999888754
No 256
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=9.3e-06 Score=84.21 Aligned_cols=122 Identities=13% Similarity=0.155 Sum_probs=82.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH-------h--hh----hhhhHHHHHHHHHhh----CC
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-------F--VG----VGASRVRDLFKKAKE----NA 323 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~-------~--vG----~~~~~vr~lF~~A~~----~~ 323 (582)
.+.|+++||+||+|+||+.+|.++|..+-+.--.-+|..+... . .+ -+.+.+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4678899999999999999999999987542100112111100 0 11 123456666665533 22
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCC
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 401 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~P 401 (582)
..|++||++|.+ ..+..|.||..++. +..++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 369999999999 24567888888874 55678888888889999999999 775 5566544
No 257
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.26 E-value=8.8e-06 Score=81.99 Aligned_cols=123 Identities=25% Similarity=0.322 Sum_probs=73.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 345 (582)
+..++||+|||||..++++|..+|.+++.++|++-.+. ..+..+|.-+... .+.+++||++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl---------- 96 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRL---------- 96 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCS----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-Cchhhhhhhhhh----------
Confidence 77899999999999999999999999999999886543 3455566544332 369999999998
Q ss_pred CChHHHHHHHHHHhhh----cC-----------ccCCCCeEEEEecCc----cccccccccCCCCccceeeccCCCHHHH
Q 007989 346 GNDEREQTLNQLLTEM----DG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRGR 406 (582)
Q Consensus 346 ~~~e~~~~L~~LL~~l----d~-----------~~~~~~viVIaaTN~----~~~LD~aLlrpgRFdr~I~i~~Pd~~eR 406 (582)
+.+.-.++.+.+..+ .. +.-+.+.-+..|.|. ...|++.|.. .| |.+.+..||.+..
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I 172 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLI 172 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHH
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHH
Confidence 334333444433332 11 011223445556663 3467877776 45 7899999998754
Q ss_pred HHH
Q 007989 407 TEI 409 (582)
Q Consensus 407 ~~I 409 (582)
.++
T Consensus 173 ~ei 175 (231)
T PF12774_consen 173 AEI 175 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.24 E-value=5.3e-06 Score=81.53 Aligned_cols=115 Identities=21% Similarity=0.283 Sum_probs=66.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-Hhhhh----------------------hhhHHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-MFVGV----------------------GASRVR 313 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-~~vG~----------------------~~~~vr 313 (582)
|.+...-++++||||+|||+++..++.+. +.+++++++.++.. .+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 33444569999999999999999987643 67888888865211 11100 011133
Q ss_pred HHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 314 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
.+.+.+.+..|++|+||-+.++...... .......+.+..++..+..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~---~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELS---DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhC---CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3444455567899999999998542111 011122333444444444343455667776644
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.8e-05 Score=78.32 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=81.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-----EE-eechhHHH------Hhh-----hhhhhHHHHHHHHHhh---
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FS-ISGSEFVE------MFV-----GVGASRVRDLFKKAKE--- 321 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-----i~-is~s~~~~------~~v-----G~~~~~vr~lF~~A~~--- 321 (582)
.+|+++||+||+|+||..+|.++|...-+.= -. -+|..+.. .++ .-+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3578999999999999999999998763310 00 01111111 000 1133456666554422
Q ss_pred --CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeecc
Q 007989 322 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (582)
Q Consensus 322 --~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~ 399 (582)
...-|++||++|.+ .....|.||..++ ++..++++|..|+.++.+.|.+++ |+. .+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23469999999998 3457788998888 456678999999999999999999 875 45555
Q ss_pred CC
Q 007989 400 VP 401 (582)
Q Consensus 400 ~P 401 (582)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 260
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=2.8e-05 Score=95.24 Aligned_cols=177 Identities=19% Similarity=0.298 Sum_probs=102.2
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE---EEeech----
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---- 298 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf---i~is~s---- 298 (582)
+...+++++|.++..+++.+.+.. .....+-+-|+|++|+|||+||+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345789999999999888877642 122345689999999999999999988764332 111110
Q ss_pred ---hH--------------HHHhhhh----h---hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHH
Q 007989 299 ---EF--------------VEMFVGV----G---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (582)
Q Consensus 299 ---~~--------------~~~~vG~----~---~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (582)
.+ ...+... . ...+ ..++.....++.+|++|++|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 00 0000000 0 0000 1222233456789999998653 233
Q ss_pred HHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccc---cHHHHHHh
Q 007989 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV---SLDVIAMR 431 (582)
Q Consensus 355 ~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dv---dl~~lA~~ 431 (582)
..+....+.+. .+-.||.||...+. ++....++.++++.|+.++..+++..++-+....++. -...++..
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 44433333222 23455666665433 2222467789999999999999999887543322211 13446666
Q ss_pred CCCCc
Q 007989 432 TPGFS 436 (582)
Q Consensus 432 t~G~s 436 (582)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 77643
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.10 E-value=4e-06 Score=79.87 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEeechhH
Q 007989 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~s~~ 300 (582)
++|.++..+++...+. ... ...++.++|+|++|+|||++.+++...+..+ ++.++|...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888887777775 221 2335689999999999999999997655322 777777655
No 262
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.0001 Score=76.69 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------EE-eechhHHH------Hhh---h--hhhhHHHHHHHHHhh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS-ISGSEFVE------MFV---G--VGASRVRDLFKKAKE 321 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-------i~-is~s~~~~------~~v---G--~~~~~vr~lF~~A~~ 321 (582)
.+.|.++||+|| +||+.+|+++|..+-+.- -. -+|..+.. .++ | -..+.+|++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 366789999996 689999999998763311 00 01111111 001 1 123567777666533
Q ss_pred ----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceee
Q 007989 322 ----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (582)
Q Consensus 322 ----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~ 397 (582)
....|++||++|.+ .....|.||..++. +..++++|..|+.++.+-|.+++ |+. .+.
T Consensus 99 ~p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~ 159 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFH 159 (290)
T ss_pred CcccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eee
Confidence 23369999999999 24577889998884 45567888888889999999999 884 677
Q ss_pred ccCCCHHHHHHHHH
Q 007989 398 VDVPDIRGRTEILK 411 (582)
Q Consensus 398 i~~Pd~~eR~~Il~ 411 (582)
|+. +.+.-.+++.
T Consensus 160 f~~-~~~~~~~~L~ 172 (290)
T PRK07276 160 FPK-NEAYLIQLLE 172 (290)
T ss_pred CCC-cHHHHHHHHH
Confidence 755 4554445554
No 263
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.09 E-value=1.2e-05 Score=87.22 Aligned_cols=220 Identities=22% Similarity=0.329 Sum_probs=129.2
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCC--ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe-echhHHHHhhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGV 307 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~p--kgvLL~GPpGTGKT~LArAlA~e~~~pfi~i-s~s~~~~~~vG~ 307 (582)
-+|.|.+++|+.|.-++-- -+++-..-|.++. -+|+|.|.||+-||-|.+.+.+-+-.-.+.. .+|. -+|.
T Consensus 342 PEIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGL 415 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGL 415 (721)
T ss_pred hhhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----cccc
Confidence 3789999999988765543 2222122243433 3799999999999999999988765544432 1111 1333
Q ss_pred hhhHHHHH-----------HHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh----h--cCcc--CCC
Q 007989 308 GASRVRDL-----------FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----M--DGFE--GNT 368 (582)
Q Consensus 308 ~~~~vr~l-----------F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~----l--d~~~--~~~ 368 (582)
++.-+++- +-.|. ..|.+|||+|.+... ....+.+.+++ + -|+. -|.
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhh
Confidence 33333221 11122 248899999998321 11122222221 0 1111 133
Q ss_pred CeEEEEecCccc-------------cccccccCCCCccc-eeeccCCCHHHHHHHHHH----HcCCCC-------CCccc
Q 007989 369 GIIVIAATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKV----HGSNKK-------FDADV 423 (582)
Q Consensus 369 ~viVIaaTN~~~-------------~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~----~l~~~~-------l~~dv 423 (582)
..-|+||.|+.. .|+.||++ |||. .+-.+.||.+.-..+-++ |..+.. ++.+.
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 567889998633 57999999 9998 344577876655554443 222111 11110
Q ss_pred c------------------HHHHHH------------hCC-CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 424 S------------------LDVIAM------------RTP-GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 424 d------------------l~~lA~------------~t~-G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
- -+.+.. .-. -.|++-|-.+++-+..+|.-+-...|..+|+++|+.-+-
T Consensus 560 mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 560 MRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 0 011100 001 247889999999999999888889999999999997543
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.08 E-value=5.5e-05 Score=77.54 Aligned_cols=172 Identities=19% Similarity=0.297 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh--cCCCE---EEeech------hHHHHh---hhh
Q 007989 242 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE--AGVPF---FSISGS------EFVEMF---VGV 307 (582)
Q Consensus 242 ~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e--~~~pf---i~is~s------~~~~~~---vG~ 307 (582)
++.++.+.|.... ...+-|.|+|++|+|||+||+.++.. ....| +.++.+ ++.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 3445555554421 23457999999999999999999987 32221 222222 111111 111
Q ss_pred h---------hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 308 G---------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 308 ~---------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
. .....+.+.......+++|++|+++... .+..+...+... ..+..||.||..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~ 138 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRD 138 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccc--cccccccccccc
Confidence 1 1223333444445559999999987651 222222222211 224566667765
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 443 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~----l~~dvdl~~lA~~t~G~sgadL~~l 443 (582)
.... ...-. -+..++++..+.++-.++|..+..... ...+.....++..+.| .+--|..+
T Consensus 139 ~~v~-~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 139 RSVA-GSLGG---TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp GGGG-TTHHS---CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccc-ccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 4322 11111 145789999999999999998865443 1122236788999988 55555444
No 265
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.05 E-value=1.9e-05 Score=82.89 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-EEeechhHHHH-------hhhhhhhHHHHHHHHHhhCCCeEEEEeCCC
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf-i~is~s~~~~~-------~vG~~~~~vr~lF~~A~~~~P~ILfIDEID 333 (582)
.+|+|+.|||+-|.|||+|.-.+-..+..+- ..+.-.+|.-. ..|... -+..+-+... ..-.+|+|||+.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~~-~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADELA-AETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHH-hcCCEEEeeeee
Confidence 4789999999999999999999988764432 23333344321 122221 1111111111 122499999986
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-cccccccccCCCCccceeeccCCCHHHHHHHHHH
Q 007989 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (582)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~ 412 (582)
-= +-...-.+..|++++- ..+|++++|+|. |+.|-+.=+..+||- |- .++++.
T Consensus 141 Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FL-------P~----I~li~~ 194 (367)
T COG1485 141 VT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFL-------PA----IDLIKS 194 (367)
T ss_pred ec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhH-------HH----HHHHHH
Confidence 52 2223457777887764 358999999996 454433222222332 22 245666
Q ss_pred HcCCCCCCcccc
Q 007989 413 HGSNKKFDADVS 424 (582)
Q Consensus 413 ~l~~~~l~~dvd 424 (582)
++.-..++...|
T Consensus 195 ~~~v~~vD~~~D 206 (367)
T COG1485 195 HFEVVNVDGPVD 206 (367)
T ss_pred heEEEEecCCcc
Confidence 665555544444
No 266
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.05 E-value=2.3e-05 Score=80.10 Aligned_cols=193 Identities=26% Similarity=0.408 Sum_probs=106.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH------hcCCCEEEeechhHHH-----Hhhhh------hhhH-HHHHHHHHhhC
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSISGSEFVE-----MFVGV------GASR-VRDLFKKAKEN 322 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~------e~~~pfi~is~s~~~~-----~~vG~------~~~~-vr~lF~~A~~~ 322 (582)
.+....+||.||.|.||++||+-+.. .+..+|+.++|..+.. ...|. ++.. -..++..|
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsa--- 281 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSA--- 281 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccC---
Confidence 33444699999999999999999944 4578999999987643 12221 1111 11222222
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc------cCCCCeEEEEecCc--cccccccccCCCCccc
Q 007989 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGNTGIIVIAATNR--ADILDSALLRPGRFDR 394 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~------~~~~~viVIaaTN~--~~~LD~aLlrpgRFdr 394 (582)
...++|+|||..++ .++.. .+..-+++-.-+ ...+.+-+|+.|-+ ...+-+...|...|.+
T Consensus 282 dggmlfldeigelg----------adeqa-mllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ar 350 (531)
T COG4650 282 DGGMLFLDEIGELG----------ADEQA-MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 (531)
T ss_pred CCceEehHhhhhcC----------ccHHH-HHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHh
Confidence 23599999999984 23322 222223322111 11234566766643 1122233333222322
Q ss_pred --eeeccCCCHHHHHHHHH--------HHcCCCC----CCccccHHHHH------HhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 395 --QVTVDVPDIRGRTEILK--------VHGSNKK----FDADVSLDVIA------MRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 395 --~I~i~~Pd~~eR~~Il~--------~~l~~~~----l~~dvdl~~lA------~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
...+.+|...+|.+-++ .|.+... +..+.--..++ ..|.| +-++|..-+...+.+|
T Consensus 351 inlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~g-nfrelsasvtrmatla--- 426 (531)
T COG4650 351 INLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRG-NFRELSASVTRMATLA--- 426 (531)
T ss_pred hheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcc-cHHHHhHHHHHHHHHh---
Confidence 45778898888877432 3322221 22221112222 24666 7788888888777776
Q ss_pred CCCccCHHHHHHHHHHH
Q 007989 455 GKAAISSKEIDDSIDRI 471 (582)
Q Consensus 455 ~~~~It~~dl~~A~~~v 471 (582)
..-.||.+.+++-+.+.
T Consensus 427 d~grit~~~ve~ei~rl 443 (531)
T COG4650 427 DSGRITLDVVEDEINRL 443 (531)
T ss_pred cCCceeHHHHHHHHHHH
Confidence 44567777777666554
No 267
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00023 Score=74.45 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------C--EEEeechhHHHHhhhhhhhHHHHHHHHHhh-----CC
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSISGSEFVEMFVGVGASRVRDLFKKAKE-----NA 323 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----------p--fi~is~s~~~~~~vG~~~~~vr~lF~~A~~-----~~ 323 (582)
+.++..||+|+.|.||+.+|++++...-+ | +..++... . ......++++.+.... +.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCC
Confidence 45668999999999999999999988622 2 22222000 0 0122456666555521 24
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCH
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
.-|++||++|.+ ..+..|.||..++. ++..+++|..|+.++.+-+.+.+ |+. ++++.+|+.
T Consensus 91 ~KvvII~~~e~m--------------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT--------------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc--------------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 569999999888 23466788888875 44556777667678899999988 774 789999988
Q ss_pred HHHHHHHHH
Q 007989 404 RGRTEILKV 412 (582)
Q Consensus 404 ~eR~~Il~~ 412 (582)
++..+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877766654
No 268
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.01 E-value=4.8e-05 Score=80.82 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=91.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE---EeechhHHHHh-------hh-hhh-----------hHHHHHHHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISGSEFVEMF-------VG-VGA-----------SRVRDLFKK 318 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi---~is~s~~~~~~-------vG-~~~-----------~~vr~lF~~ 318 (582)
..+|+|++|||.-|||||+|.-.+-...-. .. .+.-.+|+-.. .. .++ .-+.-+-++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 456999999999999999999988754421 11 11222332210 00 000 001111111
Q ss_pred HhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-cccccccccCCCCccceee
Q 007989 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVT 397 (582)
Q Consensus 319 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~LD~aLlrpgRFdr~I~ 397 (582)
.. ...++|++||+..- +-...-.|++|...+- +.+++++||+|+ |+.|-..=+. |...
T Consensus 190 Ia-~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F 248 (467)
T KOG2383|consen 190 IA-EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENF 248 (467)
T ss_pred Hh-hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhh
Confidence 11 12379999999664 2223446777777654 458999999998 5555333222 2223
Q ss_pred ccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCC-C--C-cHHHHHHHHHHHH
Q 007989 398 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTP-G--F-SGADLANLLNEAA 448 (582)
Q Consensus 398 i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~-G--~-sgadL~~lv~eA~ 448 (582)
+| -..+|+.++.-..+...+|....+.... + | +..|.+.++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 32 2367788888888888888884433221 1 2 3337888887776
No 269
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.01 E-value=4.1e-05 Score=73.40 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHhh------hh-----------------------hhh----
Q 007989 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV-----------------------GAS---- 310 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~v------G~-----------------------~~~---- 310 (582)
+|++||||||||+++..++.+ .|.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 789999999999999988664 377888887643322110 10 000
Q ss_pred -HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 311 -RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 311 -~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
....+...+....|.+|+|||+..+... ........+..++..+.. .++.+|.+++.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~ 139 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQ 139 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecc
Confidence 0133344445667899999999887421 112233344555555432 24455555544
No 270
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.99 E-value=4e-05 Score=84.51 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=57.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh------hh--------hhhHHHHHHHHHhhC
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 322 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v------G~--------~~~~vr~lF~~A~~~ 322 (582)
|.....-++|+||||+|||+|+..+|... +.++++++..+..+... |. ....+..+++..++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444568999999999999999998754 67899999876554321 11 123356677777777
Q ss_pred CCeEEEEeCCCccccc
Q 007989 323 APCIVFVDEIDAVGRQ 338 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~ 338 (582)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999998543
No 271
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.95 E-value=0.00018 Score=77.93 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEeechhHHHHhhhhhhhHHHH
Q 007989 239 AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRVRD 314 (582)
Q Consensus 239 ~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~s~~~~~~vG~~~~~vr~ 314 (582)
....|...+.++.... ++++.||||||||+++.+++.. .| -.++.+.++..... .
T Consensus 195 k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~ 253 (449)
T TIGR02688 195 KLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------R 253 (449)
T ss_pred HHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------H
Confidence 3444445555555443 8999999999999999999776 24 33444454433211 1
Q ss_pred HHHHHhhCCCeEEEEeCCCcc
Q 007989 315 LFKKAKENAPCIVFVDEIDAV 335 (582)
Q Consensus 315 lF~~A~~~~P~ILfIDEID~l 335 (582)
.+... ....+|+|||+..+
T Consensus 254 ~lg~v--~~~DlLI~DEvgyl 272 (449)
T TIGR02688 254 QIGLV--GRWDVVAFDEVATL 272 (449)
T ss_pred HHhhh--ccCCEEEEEcCCCC
Confidence 12221 23469999999886
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.92 E-value=5.4e-05 Score=81.51 Aligned_cols=79 Identities=28% Similarity=0.447 Sum_probs=55.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh------hhh--------hhhHHHHHHHHHhhC
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF------VGV--------GASRVRDLFKKAKEN 322 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~------vG~--------~~~~vr~lF~~A~~~ 322 (582)
|..+..-++|+|+||+|||+|+..+|... +.+++++++.+-.+.. .+. ....+..+++.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34444568999999999999999998754 4688888876533321 111 122355667777777
Q ss_pred CCeEEEEeCCCccccc
Q 007989 323 APCIVFVDEIDAVGRQ 338 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~ 338 (582)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998543
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.88 E-value=6.9e-05 Score=74.60 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=64.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH----HHhhhh-------------------hhhHHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVR 313 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~----~~~vG~-------------------~~~~vr 313 (582)
|.+...-++++||||+|||+++..+|.+. +.+++++++..+. ...... ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 44444568999999999999999998744 7888999887221 111110 001112
Q ss_pred HHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 314 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
.+..... ..+++|+||-+.++....-.+ .....+..+.+.+++..+..+....++.++.+..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 2222122 578899999999885432110 0112233344455444443333345566666543
No 274
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.87 E-value=0.00072 Score=69.76 Aligned_cols=213 Identities=19% Similarity=0.191 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh-----
Q 007989 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV----- 305 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v----- 305 (582)
.+.|+.-+++.+...+.. +.++. .+.|.-+=|+|+|||||.+.++.||+..... -.-|.++..|+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~---Gl~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRG---GLRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhc---cccchhHHHhhhhccC
Confidence 578888888888776655 44442 3446677789999999999999999976211 11133333332
Q ss_pred ----------hhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh---hcCccCCCCeEE
Q 007989 306 ----------GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE---MDGFEGNTGIIV 372 (582)
Q Consensus 306 ----------G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~---ld~~~~~~~viV 372 (582)
.+-..++++ .+...+.++.++||.|.+ +...-+++.-+|.. .+|... .+-++
T Consensus 154 P~~~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIF 218 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIF 218 (344)
T ss_pred CChHHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEE
Confidence 222233333 334556679999999999 45555666666653 233222 24455
Q ss_pred EEecCccc-ccc---ccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCC--CcHHHHHHHHHH
Q 007989 373 IAATNRAD-ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG--FSGADLANLLNE 446 (582)
Q Consensus 373 IaaTN~~~-~LD---~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G--~sgadL~~lv~e 446 (582)
|.-+|.-. .+. -...+.|+--..+.+.--...-....+.........+..++...+..-.+= ..-+++...++.
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 55565422 221 223344443333333322222222222221122233344444555554431 244555554443
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 447 AAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 447 A~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
.. .++| -..+.+-+++.++...
T Consensus 299 el---~~rg-~~~d~~~~erva~~l~ 320 (344)
T KOG2170|consen 299 EL---RKRG-LAPDQDFVERVANSLS 320 (344)
T ss_pred HH---Hhcc-cccchHHHHHHHHhhc
Confidence 32 2233 4556666666655543
No 275
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.6e-05 Score=86.34 Aligned_cols=200 Identities=25% Similarity=0.330 Sum_probs=123.7
Q ss_pred cccccccc-hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEeec
Q 007989 229 TFDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISG 297 (582)
Q Consensus 229 ~f~dI~G~-d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~ 297 (582)
.++-++|. ++..+.+.+++. ... .++-+|+|.||+|||.++.-+|... +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~---Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS---RKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh---ccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 35667776 555554444443 221 2478999999999999999998865 345666666
Q ss_pred hhHHH--HhhhhhhhHHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEE
Q 007989 298 SEFVE--MFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (582)
Q Consensus 298 s~~~~--~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIa 374 (582)
..++. ++.|+.+.+++++.+.+. .....||||||++.+...... .+ .....| +|..+- .+.++-+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~---~~d~~n-lLkp~L---~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YG---AIDAAN-LLKPLL---ARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---ch---HHHHHH-hhHHHH---hcCCeEEEe
Confidence 54443 566788889999999887 445679999999999654432 11 122222 222221 244588998
Q ss_pred ecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC------CCcc--ccHHHHH--HhCCCCcHHH
Q 007989 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK------FDAD--VSLDVIA--MRTPGFSGAD 439 (582)
Q Consensus 375 aTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~------l~~d--vdl~~lA--~~t~G~sgad 439 (582)
||...+ .=||++-| ||+ .+.++.|+.+.-..||........ +.+. +....++ ..+..|-+.-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~ 398 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDC 398 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchh
Confidence 886433 23899999 998 678888998776667665433311 1111 1111222 2233344555
Q ss_pred HHHHHHHHHHHHHH
Q 007989 440 LANLLNEAAILAGR 453 (582)
Q Consensus 440 L~~lv~eA~~~A~r 453 (582)
...++++|+.....
T Consensus 399 aidl~dEa~a~~~~ 412 (898)
T KOG1051|consen 399 AIDLEDEAAALVKS 412 (898)
T ss_pred cccHHHHHHHHHhh
Confidence 56777777766543
No 276
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.79 E-value=5.9e-05 Score=75.42 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=41.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhh------------hhhhHHHHHHHHHh--hCCCeEEE
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG------------VGASRVRDLFKKAK--ENAPCIVF 328 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG------------~~~~~vr~lF~~A~--~~~P~ILf 328 (582)
.|.-+|+||+||+|||++|+.++.. ..++..+++. ..+.| .....+.+.+..+. ...+.+|+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~--~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSS--KVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccc--hhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 3567999999999999999999732 2222222211 00000 01123333333332 23457999
Q ss_pred EeCCCcccc
Q 007989 329 VDEIDAVGR 337 (582)
Q Consensus 329 IDEID~l~~ 337 (582)
||.++.+..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998854
No 277
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.79 E-value=9.3e-05 Score=82.11 Aligned_cols=223 Identities=22% Similarity=0.283 Sum_probs=114.1
Q ss_pred ccccchHHHHHHHHHHHH--hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhh
Q 007989 232 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~--l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~ 309 (582)
.|.|.+.+|..+.-.+-- -+++.--.+ .+-.-+|||+|.||||||-+.|.+++-+...++..-.. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khk--vRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHK--VRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCce--eccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 466777777765433322 222221111 11112699999999999999999999887766643110 01122222
Q ss_pred hHH-----HHH------HHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHH-----HHhhhcCccCCCCeEEE
Q 007989 310 SRV-----RDL------FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ-----LLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 310 ~~v-----r~l------F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~-----LL~~ld~~~~~~~viVI 373 (582)
... +++ +-.|. ..|.+|||+|.+-.+.-. +-++..+|.--. +.+.+ +....||
T Consensus 525 ~v~KdPvtrEWTLEaGALVLAD---kGvClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsL-----qArctvI 593 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLAD---KGVCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSL-----QARCTVI 593 (854)
T ss_pred EEeeCCccceeeeccCeEEEcc---CceEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHH-----Hhhhhhh
Confidence 111 111 11122 248889999999322111 112222221111 11111 2346799
Q ss_pred EecCcc-----------c--cccccccCCCCccceeec-cC--CCHHHHHH--HHHHHcCCCCCC---------------
Q 007989 374 AATNRA-----------D--ILDSALLRPGRFDRQVTV-DV--PDIRGRTE--ILKVHGSNKKFD--------------- 420 (582)
Q Consensus 374 aaTN~~-----------~--~LD~aLlrpgRFdr~I~i-~~--Pd~~eR~~--Il~~~l~~~~l~--------------- 420 (582)
||+|+. + .|-..+++ |||-.-.+ +. |-.+++.+ ++..|.+..+-.
T Consensus 594 AAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v 671 (854)
T KOG0477|consen 594 AAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARV 671 (854)
T ss_pred eecCCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccc
Confidence 999862 1 45566778 99973333 22 22333333 344444322211
Q ss_pred -----------------------ccccHHHHHHh---------CCC---CcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 421 -----------------------ADVSLDVIAMR---------TPG---FSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 421 -----------------------~dvdl~~lA~~---------t~G---~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
.+.|.+.++.. ..| .+.+-|+.+++-+...|.-.-+..|+.+|+.
T Consensus 672 ~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~ 751 (854)
T KOG0477|consen 672 EPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVD 751 (854)
T ss_pred ccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHH
Confidence 11111222111 111 3667788888877777777777788888888
Q ss_pred HHHHHHH
Q 007989 466 DSIDRIV 472 (582)
Q Consensus 466 ~A~~~v~ 472 (582)
.|+.-++
T Consensus 752 ~AI~v~l 758 (854)
T KOG0477|consen 752 MAIRVML 758 (854)
T ss_pred HHHHHHH
Confidence 8876544
No 278
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.77 E-value=9.3e-05 Score=65.42 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~ 289 (582)
|+|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 279
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.75 E-value=0.00014 Score=76.73 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=67.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh----hhh------------hhhHHHHHHHHHh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV------------GASRVRDLFKKAK 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~----vG~------------~~~~vr~lF~~A~ 320 (582)
|.+..+-++++||||||||+||..++.++ +.+++++++.+..+.. .|. .+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 34444568999999999999998875543 7788888875533210 111 1112222222335
Q ss_pred hCCCeEEEEeCCCcccccCCCC--CCCC-ChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTG--IGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~--~~~~-~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
...+++|+||-+.++.++..-. .+.. .....+.+.+++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999986532111 0111 1122234455555555554456677776643
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.74 E-value=0.00015 Score=72.74 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=32.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEF 300 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~ 300 (582)
|.+....++++|+||||||+++..++.+ .+.++++++.++-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 4555567999999999999999999654 3778888876543
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.73 E-value=0.00022 Score=70.65 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=72.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH----Hhhhh-------------------hhhHHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV-------------------GASRVR 313 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----~~vG~-------------------~~~~vr 313 (582)
|.....-++++|+||+|||+++..+|.+. +.++++++..+... ...+. ....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 34444459999999999999999998764 67888887643111 11110 001112
Q ss_pred HHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc-----ccccC
Q 007989 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD-----SALLR 388 (582)
Q Consensus 314 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD-----~aLlr 388 (582)
.+..... ..+++|+||-+.++........ .........+..++..+..+....++.||.+.......+ |..-+
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~ 172 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGH 172 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCc
Confidence 2222222 3478999999998853211100 011122233444443333333345666666654332222 22100
Q ss_pred --CCCccceeeccCCC
Q 007989 389 --PGRFDRQVTVDVPD 402 (582)
Q Consensus 389 --pgRFdr~I~i~~Pd 402 (582)
....|.+|.+....
T Consensus 173 ~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 173 TLEHWSKVILRLEKLR 188 (218)
T ss_pred chhcceeEEEEEEEcC
Confidence 12455567776554
No 282
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00022 Score=74.43 Aligned_cols=160 Identities=20% Similarity=0.357 Sum_probs=98.4
Q ss_pred ccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHH-HH--hcCCCEEEeechhHHHH----
Q 007989 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AG--EAGVPFFSISGSEFVEM---- 303 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAl-A~--e~~~pfi~is~s~~~~~---- 303 (582)
.+.|.....+.+.+++.. .-.. ....|++.||.|+|||.+.... +. +.|-.|+.+....+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456777777778887766 2111 1347999999999999876544 33 67778877654433221
Q ss_pred -----------------hhhhhhhHHHHHHHHHhhC-----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh
Q 007989 304 -----------------FVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (582)
Q Consensus 304 -----------------~vG~~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l 361 (582)
..|.....+..+++..+.. .+.|.++||||.+++ ..++..+..+++.-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHHH
Confidence 1223334444444444332 234555679999853 23455556665543
Q ss_pred cCccCCCCeEEEEecCccc---cccccccCCCCccce-eeccCC-CHHHHHHHHHHHc
Q 007989 362 DGFEGNTGIIVIAATNRAD---ILDSALLRPGRFDRQ-VTVDVP-DIRGRTEILKVHG 414 (582)
Q Consensus 362 d~~~~~~~viVIaaTN~~~---~LD~aLlrpgRFdr~-I~i~~P-d~~eR~~Il~~~l 414 (582)
. .....+.||+.|.+.+ .|.....+ ||... |++.+| +..+-.++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 3 2356789999887654 55677777 99875 555433 5777778887765
No 283
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=6.7e-05 Score=75.14 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
.++|+|+||||||+||.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999865
No 284
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.71 E-value=4.4e-05 Score=85.27 Aligned_cols=63 Identities=22% Similarity=0.453 Sum_probs=45.2
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeec
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~ 297 (582)
-|+|+.|++++++.+.+.+..-. ..++ ...+-++|.||||+|||+||++||..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa-----~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA-----QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH-----HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 48899999999998777662210 0111 122479999999999999999998865 346666654
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.71 E-value=0.00026 Score=71.27 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=47.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHhh------hh------------------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV------------------------ 307 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~v------G~------------------------ 307 (582)
.+...-+++.||||||||+++..++.. .+.+.++++..+-.+.+. |.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 333446999999999999998665443 367778877543222110 00
Q ss_pred -hhhHHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 308 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
....+..+.+......|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223344555555578899999998863
No 286
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.71 E-value=0.00013 Score=68.88 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.+..++|+|+||||||++|+++|..++.+++. ..++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d--~d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID--TDHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 45689999999999999999999999998884 4444443
No 287
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.69 E-value=0.00019 Score=67.85 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+.-++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45579999999999999999999866
No 288
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.66 E-value=5.5e-05 Score=73.93 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=61.2
Q ss_pred EEEEcCCCCcHHHHHHHH-HH---hcCCCEEEeechhHHH-Hhh---hhh-------------hhHHHHHHHHHhhCCCe
Q 007989 267 VLLVGPPGTGKTLLAKAI-AG---EAGVPFFSISGSEFVE-MFV---GVG-------------ASRVRDLFKKAKENAPC 325 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAl-A~---e~~~pfi~is~s~~~~-~~v---G~~-------------~~~vr~lF~~A~~~~P~ 325 (582)
.+++|.||+|||+.|-.. .. +.|.+++. +...+.- .+. +.. ................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 33 34777665 5432221 100 000 00011111111111457
Q ss_pred EEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCC
Q 007989 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd 402 (582)
+|+|||++.+.+.|... .......+ +++.+. ...++-++.+|..+..+|+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 99999999998877541 11122333 444433 24578899999999999999987 888777776553
No 289
>PRK08118 topology modulation protein; Reviewed
Probab=97.65 E-value=8.9e-05 Score=70.95 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
.|+++||||+|||++|+.++..++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999999887753
No 290
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.65 E-value=0.00015 Score=87.23 Aligned_cols=138 Identities=32% Similarity=0.410 Sum_probs=93.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH--hhhh-------hhhHHHHH-HHHHhhCCCeEEEEeCC
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGV-------GASRVRDL-FKKAKENAPCIVFVDEI 332 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~--~vG~-------~~~~vr~l-F~~A~~~~P~ILfIDEI 332 (582)
..|++||.|.||+|||+|..|+|++.|-.++.++.++-.+. .+|. ++-++++. |-.|.+.. ..+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 34589999999999999999999999999999998765431 1221 22233332 33333322 47889999
Q ss_pred CcccccCCCCCCCCChHHHHHHHHHHhh--------hc-CccCCCCeEEEEecCccc------cccccccCCCCccceee
Q 007989 333 DAVGRQRGTGIGGGNDEREQTLNQLLTE--------MD-GFEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVT 397 (582)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~~--------ld-~~~~~~~viVIaaTN~~~------~LD~aLlrpgRFdr~I~ 397 (582)
... ....-.-+|..|.. +| .|..++++.|.||-|+-+ .|+..++. ||. +|.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 654 12223334444432 22 234567899999999743 68888888 996 788
Q ss_pred ccCCCHHHHHHHHHHHcC
Q 007989 398 VDVPDIRGRTEILKVHGS 415 (582)
Q Consensus 398 i~~Pd~~eR~~Il~~~l~ 415 (582)
++....++...|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 888888877777776554
No 291
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.63 E-value=0.00014 Score=79.18 Aligned_cols=121 Identities=30% Similarity=0.387 Sum_probs=62.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHH-----H------HHHhhCCCeEEEEeCCCc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDL-----F------KKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~l-----F------~~A~~~~P~ILfIDEID~ 334 (582)
+|||.|.|||.||-|.+.+-.-+-+-++ .|+.. +.-.|.+++-+|+- + -.|. ..|++|||+|.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVY-TSGKG--SSAAGLTASV~RD~~tReFylEGGAMVLAD---gGVvCIDEFDK 439 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVY-TSGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLAD---GGVVCIDEFDK 439 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEE-ecCCC--cccccceeeEEecCCcceEEEecceEEEec---CCEEEeehhhc
Confidence 6999999999999999999776544333 23211 00112222222211 0 0121 35999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhcCc--cCCCCeEEEEecCcc-----------ccc--cccccCCCCccceeecc
Q 007989 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAATNRA-----------DIL--DSALLRPGRFDRQVTVD 399 (582)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~--~~~~~viVIaaTN~~-----------~~L--D~aLlrpgRFdr~I~i~ 399 (582)
+- ..+.-.-++..+|.--.+-. .|+ .-|...-|+||.|.+ +.+ -+.+++ |||..+-+.
T Consensus 440 Mr---e~DRVAIHEAMEQQTISIAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK 512 (729)
T KOG0481|consen 440 MR---EDDRVAIHEAMEQQTISIAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK 512 (729)
T ss_pred cC---chhhhHHHHHHHhhhHHHhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEe
Confidence 82 11100011111111111111 111 113456788888863 223 377888 999766664
No 292
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.63 E-value=0.00035 Score=77.22 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=54.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh------hh--------hhhHHHHHHHHHhhC
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKEN 322 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v------G~--------~~~~vr~lF~~A~~~ 322 (582)
|.....-++|+|+||+|||+|+..+|... +.+++++++.+-.+... |. .+..+..+.+.+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444468999999999999999997754 46888988765443211 11 112345566666777
Q ss_pred CCeEEEEeCCCcccc
Q 007989 323 APCIVFVDEIDAVGR 337 (582)
Q Consensus 323 ~P~ILfIDEID~l~~ 337 (582)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999999853
No 293
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.63 E-value=0.00025 Score=83.40 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=126.4
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCch--hhhhhcCCCC-c-eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE--RFTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~--~~~~~g~~~p-k-gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
..|.+++.+....++.|....-..+.+.++..++++ .|...+..-. + .++++||||.|||+.+.++|.+.+..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 467778888888999988776666666555543332 1221111111 1 36999999999999999999999999999
Q ss_pred eechhHHHHhh-----hh--hhhHHHHHH---HHHhh-CCC-eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc
Q 007989 295 ISGSEFVEMFV-----GV--GASRVRDLF---KKAKE-NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (582)
Q Consensus 295 is~s~~~~~~v-----G~--~~~~vr~lF---~~A~~-~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld 362 (582)
.+.++..+... +. +...+...| ..... ... -||++||+|.+.. . +...-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~-------dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-E-------DRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-h-------hhhhHHHHHHHHH---
Confidence 99876554221 11 111222233 00000 112 3899999999853 1 1112234444444
Q ss_pred CccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 007989 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (582)
Q Consensus 363 ~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~ 441 (582)
....-+|+++|..+......+. |-+..++|+.|+...+..-+...+...... .+-.++.+.+.+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2334577777765544443333 433458999999988777666555433322 233366666655 55777
Q ss_pred HHHHHHHHH
Q 007989 442 NLLNEAAIL 450 (582)
Q Consensus 442 ~lv~eA~~~ 450 (582)
++++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 777766555
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00019 Score=77.07 Aligned_cols=110 Identities=19% Similarity=0.380 Sum_probs=63.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEeechhHH-------HH---hhhh------hhhHHHHHHHHHh
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFV-------EM---FVGV------GASRVRDLFKKAK 320 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~s~~~-------~~---~vG~------~~~~vr~lF~~A~ 320 (582)
.....++|+||+|+|||+++..+|..+ | ..+..+++..+. .. ..|. ....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 334579999999999999999998763 3 355555554441 11 1111 111233333332
Q ss_pred hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCccccccccc
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSAL 386 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~~~~LD~aL 386 (582)
...++|+||..... .....+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 214 -~~~DlVLIDTaG~~-------------~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 -RNKHMVLIDTIGMS-------------QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -cCCCEEEEcCCCCC-------------cccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 33478999998443 112234444555543332 24578888888877766544
No 295
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.62 E-value=0.00018 Score=74.23 Aligned_cols=113 Identities=25% Similarity=0.458 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC----------CCEEEee-chhHHHHhh-------hh------hhhHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFV-------GV------GASRVRDLFKKAK 320 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~----------~pfi~is-~s~~~~~~v-------G~------~~~~vr~lF~~A~ 320 (582)
+++++.||||+|||+|.+++++... .++..++ ..++...+. +. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4899999999999999999998763 2332222 123322111 10 1112345666667
Q ss_pred hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccccc--------ccCCCCc
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 392 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~a--------LlrpgRF 392 (582)
...|.+|++||+.. ...+..++..+. .+..+|++++.++. ... |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 78999999999621 123444444442 35678888875432 222 3334457
Q ss_pred cceeecc
Q 007989 393 DRQVTVD 399 (582)
Q Consensus 393 dr~I~i~ 399 (582)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7766653
No 296
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=4.9e-05 Score=67.72 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
|+|.||||+|||++|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776443
No 297
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00061 Score=74.17 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=74.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 345 (582)
-++++||.+||||++++.+.....-++++++..|........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999988888775556666655544322211 11222233333334579999999997
Q ss_pred CChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHH
Q 007989 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (582)
Q Consensus 346 ~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~ 408 (582)
++.+..+..+..... .++++.+++...-....+-.-+||. ..+.+.+-+..|...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 345667777765321 1344444443322223333336785 477888888888754
No 298
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.0055 Score=65.05 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=91.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hhh-----------hh-------------hhhH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MFV-----------GV-------------GASR 311 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~v-----------G~-------------~~~~ 311 (582)
-+.+.||..+|||++...+...+ +...+++++..+-. .|. +. ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 58999999999999998886544 77888888765321 000 00 1112
Q ss_pred HHHHHHHH---hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-ccccccccc
Q 007989 312 VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALL 387 (582)
Q Consensus 312 vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~LD~aLl 387 (582)
....|++. ....|-||+|||+|.+...... .++.-..+..+..+-.....-..+.+|.+... +......-.
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~-----~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~ 187 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI-----ADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQ 187 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCcch-----HHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCC
Confidence 33344432 2256889999999999532110 11111222222221111111123333333322 222211123
Q ss_pred CCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 388 RPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 388 rpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
+|=.+...+.++.-+.++-..+++.|-.. +.... ++.+-..|.| -+.=+..+|....
T Consensus 188 SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgG-hP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 188 SPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGG-HPYLVQKACYLLV 244 (331)
T ss_pred CCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCC-CHHHHHHHHHHHH
Confidence 43233335666666788888888877432 33333 7788888888 5655555555443
No 299
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.57 E-value=0.0018 Score=67.66 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=47.2
Q ss_pred CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCC---------C--
Q 007989 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP---------G-- 390 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrp---------g-- 390 (582)
..+-||||||+|.+- .++ +.+++..+..+-...++++|.+.++. .+..++... |
T Consensus 171 ~~~iViiIDdLDR~~----------~~~----i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS----------PEE----IVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCC----------cHH----HHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHH
Confidence 346799999999982 222 33333333333334778888887742 122111110 0
Q ss_pred ----CccceeeccCCCHHHHHHHHHHHc
Q 007989 391 ----RFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 391 ----RFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
-|+..+.+|.|+..+..+++...+
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELL 263 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHH
Confidence 466678889999888888777664
No 300
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.57 E-value=0.00035 Score=73.76 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=65.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH-h---hhh------------hhhHHHHHHHHHhh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~-~---vG~------------~~~~vr~lF~~A~~ 321 (582)
.+..+-+.++||||||||+||-.++.++ +.++++++..+-.+. + .|. .+..+..+-...+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3444468899999999999999886543 778888887543221 0 011 11111222222355
Q ss_pred CCCeEEEEeCCCcccccCCC-CCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 322 NAPCIVFVDEIDAVGRQRGT-GIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~~r~~-~~~~~~--~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
..+++|+||-+-++.++... +..+.. ....+.+.+.|..+.......++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67899999999998753211 111111 112233455555554444455666666543
No 301
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00063 Score=73.66 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeechhHHH-------Hh---hh------hhhhHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVE-------MF---VG------VGASRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s~~~~-------~~---vG------~~~~~vr~lF~~A 319 (582)
.|+.++|+||+|+|||+.+..+|..+ +..+..+++..+.. .| .| .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 34555555543321 11 11 1222333333333
Q ss_pred hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC-CCeEEEEecCccccccccc
Q 007989 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSAL 386 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~-~~viVIaaTN~~~~LD~aL 386 (582)
....+|+||++.... .+.. .+.++...++..... ..++|+.+|.....+...+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~~---~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDFM---KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCHH---HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 334799999997651 1111 244444444433322 4678888887776666443
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.53 E-value=0.00057 Score=67.31 Aligned_cols=104 Identities=26% Similarity=0.411 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh-----cCCCE-------------EEeechhHHH----HhhhhhhhHHHHHHHHHhhC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPF-------------FSISGSEFVE----MFVGVGASRVRDLFKKAKEN 322 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e-----~~~pf-------------i~is~s~~~~----~~vG~~~~~vr~lF~~A~~~ 322 (582)
+-++|.||+|+|||++.|.++.. .|.++ ..++..+-+. .+ .....++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~-~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYF-YAELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChH-HHHHHHHHHHHHhccCC
Confidence 46899999999999999999853 34432 1111111110 11 11224567777776555
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.|.++++||.-.-. ...........++..+.. .+..+|.+|+.++.+
T Consensus 105 ~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 78999999973310 122233334455655531 245677777776644
No 303
>PRK04296 thymidine kinase; Provisional
Probab=97.50 E-value=0.00033 Score=68.39 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=42.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec--h--hHHH---Hhhhhh-----hhHHHHHHHHHh--hCCCeEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG--S--EFVE---MFVGVG-----ASRVRDLFKKAK--ENAPCIVF 328 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~--s--~~~~---~~vG~~-----~~~vr~lF~~A~--~~~P~ILf 328 (582)
-.+++||||+|||+++..++.++ +..++.+.. . .... ...|.. .....++++.+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 666665543 1 1100 011110 112334444443 34567999
Q ss_pred EeCCCcc
Q 007989 329 VDEIDAV 335 (582)
Q Consensus 329 IDEID~l 335 (582)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999776
No 304
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.49 E-value=0.00038 Score=69.07 Aligned_cols=116 Identities=24% Similarity=0.279 Sum_probs=67.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---C------CCEEEeechhHH--HHhh------h---------------h
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEFV--EMFV------G---------------V 307 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~------~pfi~is~s~~~--~~~v------G---------------~ 307 (582)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+-. +.+. + .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 44445569999999999999999997753 3 667777765421 1100 0 0
Q ss_pred hhhHHHHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 308 GASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 308 ~~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
....+...++.. ....+++|+||-+..+......+ .+...++.+.+.+++..+..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111122223322 24567899999999885432110 001234445666776666655545566666554
No 305
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.48 E-value=0.00076 Score=59.60 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998887765
No 306
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.48 E-value=0.00037 Score=63.74 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
++++||||+|||++|+.++...+ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999988 55577777665443
No 307
>PRK07261 topology modulation protein; Provisional
Probab=97.47 E-value=0.00018 Score=68.98 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
-++++|+||+|||+||+.++...+.|++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 389999999999999999999999998876643
No 308
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.47 E-value=0.00055 Score=68.35 Aligned_cols=117 Identities=24% Similarity=0.255 Sum_probs=67.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhHH--HHhh------h----------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV--EMFV------G---------------- 306 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~~--~~~v------G---------------- 306 (582)
|.+...-+.|+||||+|||+++..++... +..+++++..+-. ..+. +
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 44445568999999999999999997543 2577888765411 1000 0
Q ss_pred ---hhhhHHHHHHHHHhhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 307 ---VGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 307 ---~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
.....+..+-+..... .+++|+||-+.++......+ .+...+..+.+.+++..+..+....++.|+.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0001112222223344 78999999999875321110 0012345556667776666555455666666643
No 309
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.44 E-value=0.0012 Score=67.27 Aligned_cols=111 Identities=20% Similarity=0.344 Sum_probs=59.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCC------EEEeec------hhHHHHh--------hhhh-hhHH---HHHHHHH--
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVP------FFSISG------SEFVEMF--------VGVG-ASRV---RDLFKKA-- 319 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~p------fi~is~------s~~~~~~--------vG~~-~~~v---r~lF~~A-- 319 (582)
-++|.||+|+|||+|++.+++..... ++++.. .+|.... .+.. ..++ ..+...|
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999876432 333222 2333322 1111 1111 1222222
Q ss_pred --hhCCCeEEEEeCCCcccccC-------CCCCCCC-ChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 320 --KENAPCIVFVDEIDAVGRQR-------GTGIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 320 --~~~~P~ILfIDEID~l~~~r-------~~~~~~~-~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
..+...+|||||+..+.... +...++| +...-..+.+++..-..+..+..+..++|.
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 23567899999999875322 2222222 222333445666543333345566667544
No 310
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.00071 Score=69.06 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=33.4
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
..+.-|.+.......+...+. +.+ -+++.||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 345556666666666655443 211 5999999999999999999885
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.43 E-value=0.00063 Score=67.79 Aligned_cols=108 Identities=23% Similarity=0.301 Sum_probs=60.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---c-CCCEEEeechhHHHHhh--------------hh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---A-GVPFFSISGSEFVEMFV--------------GV-------------- 307 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~-~~pfi~is~s~~~~~~v--------------G~-------------- 307 (582)
|.+....+|+.||||||||+++..++.+ . |-++++++..+-.+.+. ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 4455567999999999999999987543 3 88888888643322110 00
Q ss_pred -----hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 308 -----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 308 -----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
...-...+.+..+...+++++||-+..+ .... ........+..+...+. ..++.++.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLYD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTSS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhcC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 0111223333344556789999999988 2221 13334445566665553 23444444444
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.43 E-value=0.0012 Score=66.51 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=31.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~ 299 (582)
|.+....+|++||||||||++|..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4555567999999999999999877543 477888887654
No 313
>PRK14532 adenylate kinase; Provisional
Probab=97.42 E-value=0.00033 Score=67.69 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.++|.||||+|||++|+.+|++.+.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987664 55555554
No 314
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.41 E-value=0.00015 Score=74.32 Aligned_cols=101 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEeec-hh
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SE 299 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~---pfi~is~-s~ 299 (582)
.....+++++.-.....+.+.+++...-. ..+.+++.||+|+|||++++++..+..- .++.+.- .+
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ccccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 34567899998777777777766665311 1237999999999999999999887733 3333321 11
Q ss_pred HHHH------hh-hhhhhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 300 FVEM------FV-GVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 300 ~~~~------~v-G~~~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
+.-. +. ........+++..+.+..|++|+|+|+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1100 00 12334577888899999999999999944
No 315
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.40 E-value=0.00055 Score=73.69 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=57.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC-----CCEEEeechhH-------HHHh---------hhhhhhHHH---HHHHHHh--
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF-------VEMF---------VGVGASRVR---DLFKKAK-- 320 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~s~~-------~~~~---------vG~~~~~vr---~lF~~A~-- 320 (582)
.+|+||||+|||+|++.+++... +.++.+-..+. .... ......+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988663 33232222222 1111 111122232 3333332
Q ss_pred --hCCCeEEEEeCCCcccccCCC-------CCCCC-ChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 321 --ENAPCIVFVDEIDAVGRQRGT-------GIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 321 --~~~P~ILfIDEID~l~~~r~~-------~~~~~-~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
.+...+||||||+.+.+.... -.+++ +...-.....|+..-........+-+|+|
T Consensus 252 ~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T 316 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIAT 316 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEE
Confidence 345689999999998653311 11122 22233344455554333333445666665
No 316
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.39 E-value=0.0054 Score=73.03 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=87.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech--h-----HHHHhh---h----h----h------------hhHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS--E-----FVEMFV---G----V----G------------ASRVRDL 315 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s--~-----~~~~~v---G----~----~------------~~~vr~l 315 (582)
-++++||+|.|||+++...+...+ ++.-++.. + |...+. + . . ...+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 589999999999999999987766 65544442 1 111110 0 0 0 0112233
Q ss_pred HHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc-cccCCCCcc
Q 007989 316 FKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS-ALLRPGRFD 393 (582)
Q Consensus 316 F~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~-aLlrpgRFd 393 (582)
+..... ..|.+|+|||+|.+- +....+.+..|+..+ ..++.+|.++.....++- .+.. -+
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~---~~ 174 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRV---RD 174 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHh---cC
Confidence 333332 678999999999981 233445666666543 234444445543111211 1111 12
Q ss_pred ceeecc----CCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHH
Q 007989 394 RQVTVD----VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL 444 (582)
Q Consensus 394 r~I~i~----~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv 444 (582)
..+++. .-+.++-.+++...+.. .+ +..+...+...|.| ++.-+..+.
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~G-wp~~l~l~~ 226 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEG-WATALQLIA 226 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCC-hHHHHHHHH
Confidence 234455 45778888888765432 23 33447788999999 665555433
No 317
>PRK05973 replicative DNA helicase; Provisional
Probab=97.38 E-value=0.0012 Score=66.79 Aligned_cols=40 Identities=35% Similarity=0.277 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
|..+..-+++.|+||+|||+++-.++.+. |.++++++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 34444468999999999999998886644 77888888653
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.38 E-value=0.0026 Score=69.94 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=47.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh--------hhh-----hhhHHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF--------VGV-----GASRVRDLFKK 318 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~--------vG~-----~~~~vr~lF~~ 318 (582)
..|.-++++|++|+|||+++..+|..+ +..+..+++..+.. .+ .+. ....+++.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457789999999999999999998765 56777777654421 10 111 11223444555
Q ss_pred HhhCCCeEEEEeCCCcc
Q 007989 319 AKENAPCIVFVDEIDAV 335 (582)
Q Consensus 319 A~~~~P~ILfIDEID~l 335 (582)
+... .+|+||..-.+
T Consensus 173 ~~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH 187 (437)
T ss_pred hhcC--CEEEEECCCcc
Confidence 5443 68999998554
No 319
>PRK06762 hypothetical protein; Provisional
Probab=97.36 E-value=0.00073 Score=63.87 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
|.-++|+|+||+|||++|+.++..++..++.++...+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 55789999999999999999999987667777877766543
No 320
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0003 Score=70.96 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+-|.||+|||||||.+.+|+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999983
No 321
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.36 E-value=0.003 Score=62.26 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pf 292 (582)
|.-+++.|+||+|||++|+.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 44689999999999999999999998765
No 322
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.32 E-value=0.00087 Score=68.54 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
|.....-++|.||||+|||+++..+|..+ +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 44444568999999999999999886653 7788888764
No 323
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.31 E-value=0.0035 Score=66.74 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=93.2
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH------H
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------M 303 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~------~ 303 (582)
-..+.+.+.+.+.|..++-. .. -..|-.+.|+|..|||||.+.+.+-+..+.|.+.++|-+... .
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~---~~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGN---NS------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCC---CC------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 34566677777766655532 11 145778999999999999999999999999999999865542 1
Q ss_pred h---h----------hhhhhHH---HHHHHH--HhhC--CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 304 F---V----------GVGASRV---RDLFKK--AKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 304 ~---v----------G~~~~~v---r~lF~~--A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
. + ......+ -.+|++ +..+ ..-.|++|.+|.+- +.....+..++..-+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-----------D~~a~ll~~l~~L~e- 143 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-----------DMDAILLQCLFRLYE- 143 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-----------ccchHHHHHHHHHHH-
Confidence 1 0 0011122 223443 2222 24578899999992 222233444433222
Q ss_pred ccCCCCeEEEEecCccccccccccCCCCccc-eeeccCCCHHHHHHHHHHHc
Q 007989 364 FEGNTGIIVIAATNRADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 364 ~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l 414 (582)
.-+...+.++...-..+ +.-+.+-|-++- .+++|-|+.++-+.|+..--
T Consensus 144 l~~~~~i~iils~~~~e--~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 144 LLNEPTIVIILSAPSCE--KQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HhCCCceEEEEeccccH--HHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 11222333333332222 112222334443 67899999999999986543
No 324
>PRK13948 shikimate kinase; Provisional
Probab=97.31 E-value=0.00085 Score=65.25 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhh
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG 306 (582)
++|..++|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34578999999999999999999999999998544 45544333
No 325
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.31 E-value=0.0015 Score=65.49 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=31.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
|..+..-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 55555579999999999999999886543 7898888854
No 326
>PRK09354 recA recombinase A; Provisional
Probab=97.29 E-value=0.0012 Score=70.36 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=49.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH-h---hhh------------hhhHHHHHHHHHhh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~-~---vG~------------~~~~vr~lF~~A~~ 321 (582)
.+..+-++++||||||||+||-.++.+ .+..+++++..+-.+. + .|. .+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 344446889999999999999887554 3778888887653321 1 011 11111111122345
Q ss_pred CCCeEEEEeCCCcccc
Q 007989 322 NAPCIVFVDEIDAVGR 337 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~ 337 (582)
..+.+|+||-+-++.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999865
No 327
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.27 E-value=0.00042 Score=67.26 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeech-hHHH---Hh----------hhhhhhHHHHHHHHHhhCCCeEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFVE---MF----------VGVGASRVRDLFKKAKENAPCIVF 328 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s-~~~~---~~----------vG~~~~~vr~lF~~A~~~~P~ILf 328 (582)
..+++.||+|+|||++++++++... ...+.+... ++.. .. .+.....+.++++.+.+..|.+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 4799999999999999999998652 122222111 1100 00 011123466778888888999999
Q ss_pred EeCC
Q 007989 329 VDEI 332 (582)
Q Consensus 329 IDEI 332 (582)
++|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9999
No 328
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.27 E-value=0.00032 Score=73.46 Aligned_cols=66 Identities=30% Similarity=0.372 Sum_probs=46.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechhHHHH----------hhhhhhhHHHHHHHHHhhCCCeEEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEM----------FVGVGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~~~~~----------~vG~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
++++++||+|+|||++++++.... +..++.+. +-.+. ........+.++++.+.+..|..|++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE--d~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE--DTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC--CchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999998875 23333332 22111 11122225778899999999999999
Q ss_pred eCC
Q 007989 330 DEI 332 (582)
Q Consensus 330 DEI 332 (582)
.|+
T Consensus 211 GEi 213 (299)
T TIGR02782 211 GEV 213 (299)
T ss_pred ecc
Confidence 998
No 329
>PRK04040 adenylate kinase; Provisional
Probab=97.26 E-value=0.0018 Score=63.17 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--CCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~--~~pfi~is~s~~ 300 (582)
|+-++++|+||+|||++++.++.++ +.+++ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 5679999999999999999999998 55554 44443
No 330
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.26 E-value=0.0014 Score=59.90 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=41.1
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..|.|+.-+++.+.+.+.. +.++ ..+.|.-+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4789999999998887765 4443 22345566799999999999999999975
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=97.25 E-value=0.0021 Score=68.28 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh---hhh----------hhhHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VGV----------GASRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~---vG~----------~~~~vr~lF~~A 319 (582)
.|.-++|+||||+|||+++..+|..+ +..+..+++.-+.. .+ .|. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36789999999999999888887654 55666666543211 11 110 012233444555
Q ss_pred hhCCCeEEEEeCCCcc
Q 007989 320 KENAPCIVFVDEIDAV 335 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l 335 (582)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555579999998665
No 332
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.25 E-value=0.0012 Score=64.77 Aligned_cols=97 Identities=25% Similarity=0.371 Sum_probs=52.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH----hhhhhhhHHHHHHHHHh---------hCCCeEEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~----~vG~~~~~vr~lF~~A~---------~~~P~ILfI 329 (582)
-.++.||||||||++++.++..+ +..++.+..+.-... -.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 57889999999999999986533 667777665432211 11222223333322211 122369999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
||+-.+. ...+..++..... .+.++++++=.+.
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9997772 2355666665542 2446777776664
No 333
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.24 E-value=0.00054 Score=63.47 Aligned_cols=39 Identities=33% Similarity=0.691 Sum_probs=31.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG 306 (582)
.++|+|+||+|||++|+.+|..++.+++.. .++.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 379999999999999999999999988744 455544333
No 334
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.24 E-value=0.00045 Score=66.30 Aligned_cols=27 Identities=44% Similarity=0.882 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPF 292 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pf 292 (582)
.++|+|+||+||||+++.+..++ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999998877 5554
No 335
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.23 E-value=0.0012 Score=69.70 Aligned_cols=116 Identities=24% Similarity=0.258 Sum_probs=67.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechh-HH-HHh------hhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FV-EMF------VGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~-~~-~~~------vG~~-------------- 308 (582)
|.....-..++||||+|||.++..+|-.. +...+|++..+ |. +.+ .+..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 34444568899999999999998876422 45778887654 11 100 0110
Q ss_pred -h----hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 309 -A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 309 -~----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
. ..+..+-.......+.+|+||-|-++.+..-.+ .+...++++.+.+++..+..+....++.|+.+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 0 111222222334568899999999886542221 122334555677777766665555566666653
No 336
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.23 E-value=0.0027 Score=63.19 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=31.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~ 301 (582)
|.+...-+++.|+||+|||+++..++.+. +.++++++..+-.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~ 56 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE 56 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH
Confidence 44445569999999999999999887543 7788888765433
No 337
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00094 Score=64.14 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
+.++|.|++|+|||++.+++|+.++.||+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998543
No 338
>PRK13947 shikimate kinase; Provisional
Probab=97.21 E-value=0.00033 Score=66.39 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
+|+|.|+||||||++|+.+|..++.||+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997543
No 339
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.18 E-value=0.0011 Score=65.13 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=60.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH-------HHh---hhh----------hhhHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKAK 320 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~-------~~~---vG~----------~~~~vr~lF~~A~ 320 (582)
|+-++|+||+|+|||+.+-.+|..+ +..+..+++..+. ..| .+. .....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999988887754 5555555544332 111 111 1123445566665
Q ss_pred hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
...-.+|+||-...- ..+.+....+..++..+ .+..-++|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 555568999876332 11223334444555544 2334466667776666555
No 340
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.18 E-value=0.0017 Score=68.41 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=67.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhH-H-HHh------hhhhh-------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF-V-EMF------VGVGA------------- 309 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~-~-~~~------vG~~~------------- 309 (582)
|.+...-++++||||+|||.++..+|..+ +..+++++..+- . +.+ .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 44555568999999999999999998653 347888887551 1 100 01000
Q ss_pred ------hHHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 310 ------SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 310 ------~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
..+..+...... ..+++|+||-|-++.+....+ .+...++++.+.+++..+..+....++.||.+..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001122222233 466799999999885432111 1122344555667666665554455666766654
No 341
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.17 E-value=0.001 Score=70.90 Aligned_cols=67 Identities=21% Similarity=0.401 Sum_probs=44.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----CEEEee-chhHHH---------HhhhhhhhHHHHHHHHHhhCCCeEEEEeC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~----pfi~is-~s~~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 331 (582)
.+++.||+|+|||++.+++.+...- .++.+. ..++.. .-+|.....+.+.++.+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886642 233321 112110 01222223456677778888999999999
Q ss_pred C
Q 007989 332 I 332 (582)
Q Consensus 332 I 332 (582)
+
T Consensus 204 i 204 (343)
T TIGR01420 204 M 204 (343)
T ss_pred C
Confidence 8
No 342
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.00067 Score=66.64 Aligned_cols=67 Identities=28% Similarity=0.451 Sum_probs=42.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----CEEEeech-hHHH---------HhhhhhhhHHHHHHHHHhhCCCeEEEEeC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGS-EFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~----pfi~is~s-~~~~---------~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 331 (582)
-+++.||+|+|||+++++++..... .++.+... ++.. .-++.....+.+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 22222111 1110 00122223455667777777899999999
Q ss_pred C
Q 007989 332 I 332 (582)
Q Consensus 332 I 332 (582)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0032 Score=62.96 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=45.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeech-hHHHHhhhh-------------hhhHHHHHHHHHhhCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS-EFVEMFVGV-------------GASRVRDLFKKAKENA 323 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~s-~~~~~~vG~-------------~~~~vr~lF~~A~~~~ 323 (582)
+.|+.||||||||++.|-+|.-. ...+..++-+ +...-..|. ..-.-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 68999999999999999998854 2334444432 222211111 1122345666678899
Q ss_pred CeEEEEeCCCc
Q 007989 324 PCIVFVDEIDA 334 (582)
Q Consensus 324 P~ILfIDEID~ 334 (582)
|.|+++|||..
T Consensus 219 PEViIvDEIGt 229 (308)
T COG3854 219 PEVIIVDEIGT 229 (308)
T ss_pred CcEEEEecccc
Confidence 99999999954
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.16 E-value=0.0019 Score=67.69 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=65.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechh-HHH-Hh------hhhhh-------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FVE-MF------VGVGA------------- 309 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~-~~~-~~------vG~~~------------- 309 (582)
|.+...-++++||||+|||+++-.+|..+ +...++++..+ |.. .+ .+...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 44455568999999999999999997663 33788888765 111 00 01000
Q ss_pred ---h---HHHHHHHHHhhC--CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 310 ---S---RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 310 ---~---~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
. .+..+.+..... .+++|+||-|-++.+..-.+ .+...++++.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~-~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVG-RGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0 112222333333 36799999998875432111 111233445566666656555445566666654
No 345
>PRK03839 putative kinase; Provisional
Probab=97.14 E-value=0.00038 Score=66.86 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 346
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.14 E-value=0.0024 Score=63.71 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (582)
|......++++||||+|||+++..++.+ .+.+.++++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4455567999999999999999987643 36677777753
No 347
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.12 E-value=0.022 Score=60.06 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred HHHHHHHHhh--C-CCeEEEEeCCCcccccCCCC---CCCCChHHHHHHHHHHhhhcCccC-CCCeEE--EEecCc---c
Q 007989 312 VRDLFKKAKE--N-APCIVFVDEIDAVGRQRGTG---IGGGNDEREQTLNQLLTEMDGFEG-NTGIIV--IAATNR---A 379 (582)
Q Consensus 312 vr~lF~~A~~--~-~P~ILfIDEID~l~~~r~~~---~~~~~~e~~~~L~~LL~~ld~~~~-~~~viV--IaaTN~---~ 379 (582)
+..++++.+. . .|.++-||++.++...-... ...-+...-.....|+..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444555433 2 47788899999997652211 111122333444445544332222 334444 566532 2
Q ss_pred c--cccccccCCCC------cc-------------ceeeccCCCHHHHHHHHHHHcCCCCCCc----cccHHHHHHhCCC
Q 007989 380 D--ILDSALLRPGR------FD-------------RQVTVDVPDIRGRTEILKVHGSNKKFDA----DVSLDVIAMRTPG 434 (582)
Q Consensus 380 ~--~LD~aLlrpgR------Fd-------------r~I~i~~Pd~~eR~~Il~~~l~~~~l~~----dvdl~~lA~~t~G 434 (582)
. .++.+|....- |. ..++++..+.+|-..+++.+....-+.. +.-.+.+...+.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 45555554211 21 1578888899999999998876544432 2234555555566
Q ss_pred CcHHHHHH
Q 007989 435 FSGADLAN 442 (582)
Q Consensus 435 ~sgadL~~ 442 (582)
+++++..
T Consensus 302 -Np~el~k 308 (309)
T PF10236_consen 302 -NPRELEK 308 (309)
T ss_pred -CHHHhcc
Confidence 8888754
No 348
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0077 Score=65.67 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=60.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHHH-------Hh---hhh---hhhHHHHHHHHHhhCCCe
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE-------MF---VGV---GASRVRDLFKKAKENAPC 325 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~~-------~~---vG~---~~~~vr~lF~~A~~~~P~ 325 (582)
.+.-+++.||+|+|||+++..+|.+. |..+..+++..+.. .| .+. ......++.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568999999999999999998754 44566666554332 11 111 112233444444444557
Q ss_pred EEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccc
Q 007989 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (582)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aL 386 (582)
+|+||=.... ..+...-..+..++...........++|+.+|...+.+....
T Consensus 302 ~VLIDTaGr~---------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYS---------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCC---------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 8888863221 011222222333333222112234577777777665554433
No 349
>PRK13946 shikimate kinase; Provisional
Probab=97.11 E-value=0.0013 Score=63.71 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.++.|+|.|+||+|||++++.+|..+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999988655
No 350
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.11 E-value=0.0015 Score=61.99 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=60.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhH--------HHHhhh-----hhhhHHHHHHHHHhhCCCeEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEMFVG-----VGASRVRDLFKKAKENAPCIVF 328 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~--------~~~~vG-----~~~~~vr~lF~~A~~~~P~ILf 328 (582)
...+.|.||+|+|||+|.+.+++.... =-+.+++.+. ....++ .+-.+.+-.+..|.-..|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 346899999999999999999986521 0112222111 111011 0112334456667778899999
Q ss_pred EeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
+||-..- -+....+.+.+++.++. .. +..+|.+|+..+.
T Consensus 106 lDEP~~~----------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~ 144 (163)
T cd03216 106 LDEPTAA----------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDE 144 (163)
T ss_pred EECCCcC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 9997442 24555666667776653 12 3455556665543
No 351
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0046 Score=66.51 Aligned_cols=81 Identities=23% Similarity=0.426 Sum_probs=60.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--CCCEEEeechhHHHHh------hh--------hhhhHHHHHHHHHhhCCCeEEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMF------VG--------VGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--~~pfi~is~s~~~~~~------vG--------~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
-+|+-|.||.|||+|.-.+|..+ ..+++|+++.+-.... .+ ..+.++.++++......|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 47888999999999988886654 3389999998766532 11 13346788888888999999999
Q ss_pred eCCCcccccCCCCCCCC
Q 007989 330 DEIDAVGRQRGTGIGGG 346 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~ 346 (582)
|-|..+....-.+..++
T Consensus 175 DSIQT~~s~~~~SapGs 191 (456)
T COG1066 175 DSIQTLYSEEITSAPGS 191 (456)
T ss_pred eccceeecccccCCCCc
Confidence 99999976554433333
No 352
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.00049 Score=66.36 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.|+|+|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999997654
No 353
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.09 E-value=0.0014 Score=64.51 Aligned_cols=124 Identities=27% Similarity=0.405 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHH
Q 007989 240 KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA 319 (582)
Q Consensus 240 k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A 319 (582)
+..+...|....+| |.+....++|.|+-|+|||++.+.|+.+ ++.-+.... ....... ..
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~----~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLE----QL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHH----HH
Confidence 55666666665555 4555667999999999999999999666 221110000 0011111 12
Q ss_pred hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh-cCccC---------CCCeEEEEecCccccc-cccccC
Q 007989 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFEG---------NTGIIVIAATNRADIL-DSALLR 388 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l-d~~~~---------~~~viVIaaTN~~~~L-D~aLlr 388 (582)
... -|+.+||++.+.+ .....+..+++.- +.+.. ....++|+|||..+.| |+.=-|
T Consensus 94 ~~~--~iveldEl~~~~k-----------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR 160 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSK-----------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR 160 (198)
T ss_pred HHh--HheeHHHHhhcch-----------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe
Confidence 122 3889999999841 1234566666542 22111 1247889999998755 455555
Q ss_pred CCCccceeecc
Q 007989 389 PGRFDRQVTVD 399 (582)
Q Consensus 389 pgRFdr~I~i~ 399 (582)
||- .|++.
T Consensus 161 --Rf~-~v~v~ 168 (198)
T PF05272_consen 161 --RFW-PVEVS 168 (198)
T ss_pred --EEE-EEEEc
Confidence 773 45554
No 354
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.09 E-value=0.0021 Score=68.61 Aligned_cols=116 Identities=25% Similarity=0.251 Sum_probs=66.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechh-H-----HHHh--hhhhh-------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F-----VEMF--VGVGA------------- 309 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~-~-----~~~~--vG~~~------------- 309 (582)
|.....-..|+||||||||.|+..+|-.. +..+++++... | .... .|...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 34444458899999999999999886432 34677777644 1 1100 01100
Q ss_pred ------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 310 ------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 310 ------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
..+..+-.......+.+|+||-|-++.+....+ .+...++++.+.+++..|..+....++.||.+.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111122222334568899999999886543221 112335666677777766555445566666553
No 355
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.08 E-value=0.0041 Score=61.90 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=57.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-----hcCCCEEE--------------eechhHHHHhhhhhhhHHHHHHH-HHhhCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAG-----EAGVPFFS--------------ISGSEFVEMFVGVGASRVRDLFK-KAKENA 323 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~-----e~~~pfi~--------------is~s~~~~~~vG~~~~~vr~lF~-~A~~~~ 323 (582)
++.++|+||.|+|||++.|.++. ..|.++.. +...+-...........++.+-. .+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 35799999999999999999973 23432211 11111111111111122222211 122356
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccc
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aL 386 (582)
|++++|||+..-. ...+....+..++..+-. ....+..+|.+|...+......
T Consensus 109 ~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 109 RSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 8899999985521 112233444455555421 1112346777888766554443
No 356
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.07 E-value=0.0025 Score=65.32 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (582)
|.+...-++++||||||||+++..+|.+ .|-++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4444556999999999999999988653 36688888755
No 357
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.05 E-value=0.00062 Score=65.25 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=32.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
+-++|.|+||+|||++|++++.+.+.+++.++...+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 368999999999999999999999888887776655543
No 358
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.05 E-value=0.0018 Score=59.25 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
+.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 359
>PLN02200 adenylate kinase family protein
Probab=97.04 E-value=0.0008 Score=68.00 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
+.+.|.-+++.||||+|||++|+.+|.+.|++ .+++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 45566779999999999999999999999865 4677776643
No 360
>PTZ00035 Rad51 protein; Provisional
Probab=97.04 E-value=0.0029 Score=67.45 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=65.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhH-H-----HHh--hhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF-V-----EMF--VGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~-~-----~~~--vG~~-------------- 308 (582)
|.....-+.|+||||+|||+++..++... +..+++++...- . ... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 44444568899999999999999997533 345667775431 1 100 0000
Q ss_pred -----hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 309 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
...+..+........+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111222222345678999999999865321111 1233456667777776665544556666654
No 361
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0013 Score=61.52 Aligned_cols=35 Identities=40% Similarity=0.815 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
++|++|-||||||+++..+|...+.+++.+ ++++.
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vk 43 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVK 43 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHh
Confidence 699999999999999999999999887754 45543
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0048 Score=66.69 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH----H---Hh-
Q 007989 237 DEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF- 304 (582)
Q Consensus 237 d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~----~---~~- 304 (582)
++.++.+.+.+.. +..+.. ....|+-++|.||+|+|||+++..+|..+ +..+..++++.+. + .|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~----~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENV----FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhccccc----cccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 4455555554433 322211 12235789999999999999999998765 4556666664332 1 11
Q ss_pred --------hhhhhhHHHHHHHHHhh-CCCeEEEEeCCCc
Q 007989 305 --------VGVGASRVRDLFKKAKE-NAPCIVFVDEIDA 334 (582)
Q Consensus 305 --------vG~~~~~vr~lF~~A~~-~~P~ILfIDEID~ 334 (582)
+...+..+.+.++.++. ....+||||-...
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGK 331 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 11233455555655543 2346888887644
No 363
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.03 E-value=0.00095 Score=70.53 Aligned_cols=69 Identities=28% Similarity=0.395 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEee-chhHH---HH---hhhhhhhHHHHHHHHHhhCCCeEEEEeCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---EM---FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is-~s~~~---~~---~vG~~~~~vr~lF~~A~~~~P~ILfIDEI 332 (582)
+++++.|++|+|||+++++++.+. ...++.+. ..++. .. +.....-...++++.+.+..|+.|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 489999999999999999998763 12233221 11111 00 01111234678899999999999999998
Q ss_pred C
Q 007989 333 D 333 (582)
Q Consensus 333 D 333 (582)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 3
No 364
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.03 E-value=0.0014 Score=69.77 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEee-chhHHH--------Hh-----hhhhhhHHHHHHHHHhhCCCeEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE--------MF-----VGVGASRVRDLFKKAKENAPCIV 327 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~s~~~~--------~~-----vG~~~~~vr~lF~~A~~~~P~IL 327 (582)
.++++++|++|+|||++.+++.....- .++.+. ..++.- .+ .+...-...++++.+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 458999999999999999999886632 233221 011110 00 01122246788999999999999
Q ss_pred EEeCCC
Q 007989 328 FVDEID 333 (582)
Q Consensus 328 fIDEID 333 (582)
++.|+.
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999984
No 365
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.03 E-value=0.0027 Score=73.99 Aligned_cols=116 Identities=23% Similarity=0.277 Sum_probs=64.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeechhHHH-Hh---hhh------------hhhHHHHHHHHHh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-MF---VGV------------GASRVRDLFKKAK 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s~~~~-~~---vG~------------~~~~vr~lF~~A~ 320 (582)
|.+...-++++||||||||+|+..++. ..|.++++++..+-.. .+ .|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 344445689999999999999977644 3467788887654222 00 111 1111111112234
Q ss_pred hCCCeEEEEeCCCcccccCC-CCCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 321 ENAPCIVFVDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~-~~~~~~~--~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
...+.+|+||-+.++..+.. .+..+.. ...++.++++|..|..+....++.+|.+
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 56789999999999975221 1111111 1233444566665555544555666655
No 366
>PRK04328 hypothetical protein; Provisional
Probab=97.03 E-value=0.0059 Score=62.18 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~ 299 (582)
|.+....+|++||||||||+|+..++.+ .|-+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 4444557999999999999999887543 367888887643
No 367
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.02 E-value=0.00059 Score=65.40 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
++++||||+|||++|+.+|.+.+++ .++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999865 4555565543
No 368
>PRK13695 putative NTPase; Provisional
Probab=97.02 E-value=0.0082 Score=57.36 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.++|.|++|+|||+|++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 369
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.02 E-value=0.001 Score=70.35 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEee-chhHHH------HhhhhhhhHHHHHHHHHhhCCCeEEEEeCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVE------MFVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is-~s~~~~------~~vG~~~~~vr~lF~~A~~~~P~ILfIDEI 332 (582)
+++|+.|++|+|||+++++++.+. +..++.+. ..++.- .+.....-...++++.+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 489999999999999999998865 22333332 112110 001111224677888889999999999998
No 370
>PLN02674 adenylate kinase
Probab=97.02 E-value=0.0025 Score=64.78 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.+..++|.||||+||+++|+.+|...+++. ++..+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 345799999999999999999999998655 455666543
No 371
>PRK13949 shikimate kinase; Provisional
Probab=97.00 E-value=0.00065 Score=65.13 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.++|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999988755
No 372
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.00 E-value=0.0045 Score=62.79 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777655543
No 373
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.97 E-value=0.0032 Score=60.50 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
-+|+.|+||+|||++|..++.+.+.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988888877654
No 374
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.96 E-value=0.005 Score=63.54 Aligned_cols=91 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhH
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~ 311 (582)
|++=.+++.+.+..+.+-|..|. .++||.|.+|+||++++|..|.-++..++.+..+.-.+ ..+-...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 46667888998888888888764 37999999999999999999998899998887543111 1222345
Q ss_pred HHHHHHHHh-hCCCeEEEEeCCCc
Q 007989 312 VRDLFKKAK-ENAPCIVFVDEIDA 334 (582)
Q Consensus 312 vr~lF~~A~-~~~P~ILfIDEID~ 334 (582)
++.++..|- ++.|.+++++|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 666666553 56788999988554
No 375
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.96 E-value=0.0022 Score=66.01 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=56.9
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEee-chhHHHH
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFVEM 303 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is-~s~~~~~ 303 (582)
.+++++.-.++..+.+++++. .+. ..+++.||+|+|||++++++..+.. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467777544555555544442 111 1489999999999999999977653 2344432 1111100
Q ss_pred -----hhh-hhhhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 304 -----FVG-VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 304 -----~vG-~~~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
.+. .......+.++.+.+..|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 001 1112356777888889999999999943
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.95 E-value=0.0031 Score=59.08 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
++++|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777787766654
No 377
>PRK14531 adenylate kinase; Provisional
Probab=96.95 E-value=0.00088 Score=64.79 Aligned_cols=36 Identities=28% Similarity=0.622 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.++++||||+|||++++.+|...|++++. +.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHHH
Confidence 359999999999999999999999987654 445443
No 378
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.94 E-value=0.0066 Score=58.16 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.++|+||+|||||+|.|++|.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5999999999999999999983
No 379
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00079 Score=65.05 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.|+|.|+||+|||++|+++++.++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.94 E-value=0.0025 Score=71.10 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh----------------------------h
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----------------------------G 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~----------------------------~ 308 (582)
|......+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 33444469999999999999999997754 6688888876554422110 0
Q ss_pred hhHHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 309 ASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 309 ~~~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 2334555666667788999999998874
No 381
>PRK10867 signal recognition particle protein; Provisional
Probab=96.94 E-value=0.013 Score=64.54 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=47.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHHHH----h------hh----------hhhhHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEM----F------VG----------VGASRVRDLFK 317 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~~~----~------vG----------~~~~~vr~lF~ 317 (582)
..|.-++++||+|+|||+++..+|..+ |..+..+++..+... + .+ ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776643 677787887644321 0 00 11122334555
Q ss_pred HHhhCCCeEEEEeCCCcc
Q 007989 318 KAKENAPCIVFVDEIDAV 335 (582)
Q Consensus 318 ~A~~~~P~ILfIDEID~l 335 (582)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666678998876544
No 382
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.93 E-value=0.0054 Score=57.64 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHhcC----CCEEEeec
Q 007989 265 KGVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~-LArAlA~e~~----~pfi~is~ 297 (582)
+.+++.||+|+|||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555544332 34555554
No 383
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.93 E-value=0.0029 Score=66.80 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=65.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEeechhH-H-----HHh--hhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSEF-V-----EMF--VGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s~~-~-----~~~--vG~~-------------- 308 (582)
|.....-+.++||||+|||+++..++..+. ...++++..+- . ... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 444455688999999999999999876321 35677776552 1 100 0000
Q ss_pred -hh----HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 309 -AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 309 -~~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
.. .+..+........+.+|+||-|-++.+....+. +....++..+.+++..+..+....++.|+.+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 01 112222222345688999999998864322111 11223455567777776655445566666653
No 384
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.92 E-value=0.0018 Score=67.96 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=47.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhHHHHh---------------hhhhhhHHHHHHHHHhhCC
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEMF---------------VGVGASRVRDLFKKAKENA 323 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~~~~~---------------vG~~~~~vr~lF~~A~~~~ 323 (582)
.+....+++.||+|+|||++++++++...- ..+.+ .+-.+.. .+...-.+.+++..+....
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 334458999999999999999999887632 22222 1111100 0111234567888888899
Q ss_pred CeEEEEeCCC
Q 007989 324 PCIVFVDEID 333 (582)
Q Consensus 324 P~ILfIDEID 333 (582)
|.+|++||+-
T Consensus 219 pd~ii~gE~r 228 (308)
T TIGR02788 219 PDRIILGELR 228 (308)
T ss_pred CCeEEEeccC
Confidence 9999999984
No 385
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.0071 Score=58.65 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA 285 (582)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 386
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.89 E-value=0.0038 Score=62.92 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHh---------------cCCCEEEeechh
Q 007989 267 VLLVGPPGTGKTLLAKAIAGE---------------AGVPFFSISGSE 299 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e---------------~~~pfi~is~s~ 299 (582)
-+|+||||+|||+|+..+|-. -+.+++++++++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 589999999999999999753 134678888654
No 387
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.89 E-value=0.005 Score=59.15 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH-----HHH---hh---------hhhhhHHHHHHHHHhhCCCeEEEE
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF-----VEM---FV---------GVGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~-----~~~---~v---------G~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
+|+.|+||+|||++|..++.+.+.+++++....- ... +. .+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778888764422 211 10 111223344443222 4668999
Q ss_pred eCCCcccccCCCCCCCC-ChHHHHHHHHHHhhhc
Q 007989 330 DEIDAVGRQRGTGIGGG-NDEREQTLNQLLTEMD 362 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~-~~e~~~~L~~LL~~ld 362 (582)
|-+..+..+--...... .......+..|+..+.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~ 113 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR 113 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence 99887754332110000 0122344555666654
No 388
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.88 E-value=0.0009 Score=64.54 Aligned_cols=35 Identities=37% Similarity=0.743 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
|+|+||||+|||++|+.+|.+.+++++ +.++++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999887665 45555543
No 389
>PRK13764 ATPase; Provisional
Probab=96.88 E-value=0.0015 Score=74.20 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=42.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEee-chhHH-----HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFV-----EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is-~s~~~-----~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
.+++|++||||+|||+++++++..+. ..+.++. ..++. ..+.. .........+.+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 35899999999999999999988763 2232221 11111 11100 001123333444567899999999843
No 390
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.88 E-value=0.0034 Score=65.99 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
.++..++|+|+||+|||++++.+|..+|+||+.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 445689999999999999999999999999994
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.88 E-value=0.0023 Score=72.27 Aligned_cols=53 Identities=32% Similarity=0.379 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 313 r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
|-.|....-++|.++||||.-.- -+++.+..+.+++.+. -+++.||..+.++.
T Consensus 523 RlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 44577777789999999998543 2556667777777631 24567888777654
No 392
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.87 E-value=0.0072 Score=67.49 Aligned_cols=41 Identities=29% Similarity=0.333 Sum_probs=31.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEeechhH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEF 300 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~s~~ 300 (582)
|......+|+.||||||||++|..++.+ .|-+.++++..+-
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4555667999999999999999988443 2678888886543
No 393
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.87 E-value=0.0038 Score=66.58 Aligned_cols=117 Identities=19% Similarity=0.279 Sum_probs=68.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechh------HHHHh--hhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~------~~~~~--vG~~-------------- 308 (582)
|.....-+.++|+||+|||.++..+|..+ +.++++++..+ +.+.. .+..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 33444458899999999999999887432 23688888765 11110 0000
Q ss_pred -hhHHHHHH----HHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 309 -ASRVRDLF----KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 309 -~~~vr~lF----~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
......++ .......+.+|+||-|-++.+....+ .+...++++.+.+++..+..+....++.|+.+..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 01111122 22344568899999999986532111 1122345566778877776655556666666543
No 394
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.86 E-value=0.0014 Score=64.86 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=68.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH-hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~-~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 344 (582)
-++|+||+|||||.+|-++|++.|.|++..+.-..... .+|.+... ..-+ +..+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~-~~el----~~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPT-PSEL----KGTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SGGG----TT-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCC-HHHH----cccc-eeeecccccc---------
Confidence 47899999999999999999999999999886544332 23332111 1111 1112 2777764332
Q ss_pred CCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-cccc--cccccCCCCccc-eeeccCCCHHHHHHHHHHHcCCCCCC
Q 007989 345 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADIL--DSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKKFD 420 (582)
Q Consensus 345 ~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-~~~L--D~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~~~l~ 420 (582)
.|.-...+....|+..++......++|+=+-+.. ...+ |+-.-. .|.. +..+++||.+.-..-.+...+++...
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 1233445566777777777776555555454432 1111 111112 3433 45668888776554444333322111
Q ss_pred ---ccccHHHHHHhCC
Q 007989 421 ---ADVSLDVIAMRTP 433 (582)
Q Consensus 421 ---~dvdl~~lA~~t~ 433 (582)
..--+++++..|.
T Consensus 146 ~~~~~Sll~EL~~lW~ 161 (233)
T PF01745_consen 146 DSSGPSLLEELVALWN 161 (233)
T ss_dssp -SSS--HHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHh
Confidence 1122556665544
No 395
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.86 E-value=0.00096 Score=61.91 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
++|+|+||+|||++|+.++...+.+++ +.+.+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 454444
No 396
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.86 E-value=0.0035 Score=61.52 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=33.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~ 309 (582)
-+.++|++|+|||++++.++...|.+++ ++.++.......+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~ 44 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGS 44 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCc
Confidence 4889999999999999999998888876 67777665544333
No 397
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.86 E-value=0.0012 Score=66.57 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.|..++|.||||+|||++|+.+|+..+++++.+ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 345699999999999999999999999877654 44443
No 398
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.85 E-value=0.0098 Score=57.53 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC-------------CEEEeechhHHHHhh-h-----h------hhhHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFV-G-----V------GASRVRDLFKKA 319 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~-------------pfi~is~s~~~~~~v-G-----~------~~~~vr~lF~~A 319 (582)
.-+.|.||.|+|||+|.+++....|- ++.++...++.+.+- + . +-.+.+-.+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara 101 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence 35889999999999999999643221 233332222222211 0 0 112334445556
Q ss_pred hhCC--CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceee
Q 007989 320 KENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVT 397 (582)
Q Consensus 320 ~~~~--P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~ 397 (582)
.... |.++++||--.- -+....+.+.+++.++. . .+..||.+|+.++.+ + .+|+.+.
T Consensus 102 l~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~d~i~~ 160 (176)
T cd03238 102 LFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SADWIID 160 (176)
T ss_pred HhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hCCEEEE
Confidence 6667 899999997543 24444455555555542 1 244566667665432 3 4566666
Q ss_pred cc
Q 007989 398 VD 399 (582)
Q Consensus 398 i~ 399 (582)
+.
T Consensus 161 l~ 162 (176)
T cd03238 161 FG 162 (176)
T ss_pred EC
Confidence 54
No 399
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.85 E-value=0.0036 Score=64.97 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEeechhH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 300 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~----~-~pfi~is~s~~ 300 (582)
.++.++|+||+|+|||+++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45679999999999999999998755 3 67777777654
No 400
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0016 Score=63.12 Aligned_cols=34 Identities=32% Similarity=0.662 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.++|.||||+||||+|+.||+.+ ++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 48999999999999999999994 45556654444
No 401
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.83 E-value=0.023 Score=63.27 Aligned_cols=148 Identities=24% Similarity=0.307 Sum_probs=80.9
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCC--CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe-echhHHH------
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI--PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVE------ 302 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~--pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i-s~s~~~~------ 302 (582)
.|.|.+.+|+.+.-++-- --++--.-|..+ .-++||+|.|.|-||-|.|.+-+.+...+-.. .+|.=+.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 578999999977654432 111111112222 23799999999999999999977653221110 1111000
Q ss_pred HhhhhhhhHHHH-HHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh------cCc--cCCCCeEEE
Q 007989 303 MFVGVGASRVRD-LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVI 373 (582)
Q Consensus 303 ~~vG~~~~~vr~-lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l------d~~--~~~~~viVI 373 (582)
.--..+++++.. ..-.|. ..|++|||+|.+ ++.....+.+.+++- -|+ .-|...-|+
T Consensus 380 tD~eTGERRLEAGAMVLAD---RGVVCIDEFDKM-----------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLAD---RGVVCIDEFDKM-----------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eccccchhhhhcCceEEcc---CceEEehhcccc-----------cchhHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 001112333211 111122 359999999998 222233344444331 111 124567899
Q ss_pred EecCccc-------------cccccccCCCCccceee
Q 007989 374 AATNRAD-------------ILDSALLRPGRFDRQVT 397 (582)
Q Consensus 374 aaTN~~~-------------~LD~aLlrpgRFdr~I~ 397 (582)
||.|+.. .|+..|++ |||..+.
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv 480 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFV 480 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHh--hhcEEEE
Confidence 9999743 46888999 9997443
No 402
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.044 Score=55.59 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=93.2
Q ss_pred CCceEEEEcCCC-CcHHHHHHHHHHhcCC---------CEEEeechhHHHH-hhhhhhhHHHHHHHHHhh----CCCeEE
Q 007989 263 IPKGVLLVGPPG-TGKTLLAKAIAGEAGV---------PFFSISGSEFVEM-FVGVGASRVRDLFKKAKE----NAPCIV 327 (582)
Q Consensus 263 ~pkgvLL~GPpG-TGKT~LArAlA~e~~~---------pfi~is~s~~~~~-~vG~~~~~vr~lF~~A~~----~~P~IL 327 (582)
..+..|+.|..+ ++|..++..++....+ .++.+....-... --.-+.+.+|++-+.+.. +..-|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 345799999998 9999999888776522 2333322100000 001133556776665532 334699
Q ss_pred EEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHH
Q 007989 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 407 (582)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~ 407 (582)
+||++|.+ .....|.||..++. +..++++|..|+.++.+.|.+++ |+. .+.++.|+...-.
T Consensus 94 II~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYN 154 (263)
T ss_pred EEechHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHH
Confidence 99999999 34577889988884 55677888888889999999999 884 7889999987777
Q ss_pred HHHHHHcCCC
Q 007989 408 EILKVHGSNK 417 (582)
Q Consensus 408 ~Il~~~l~~~ 417 (582)
+.....+...
T Consensus 155 e~~~~~~~p~ 164 (263)
T PRK06581 155 ELYSQFIQPI 164 (263)
T ss_pred HHHHHhcccc
Confidence 7776665443
No 403
>PRK06696 uridine kinase; Validated
Probab=96.82 E-value=0.0023 Score=63.84 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=34.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
.|.-|.+.|++|+|||++|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 35579999999999999999999988 77888888877753
No 404
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.81 E-value=0.0071 Score=56.27 Aligned_cols=99 Identities=25% Similarity=0.303 Sum_probs=55.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEeech---hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGS---EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~s---~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
...+.|.||+|+|||+|++++++..... -+.+++. .++.. ...+. +-+-.+..+.-..|.++++||-..=
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~-~~rv~laral~~~p~illlDEP~~~--- 100 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGE-KMRLALAKLLLENPNLLLLDEPTNH--- 100 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHH-HHHHHHHHHHhcCCCEEEEeCCccC---
Confidence 3468999999999999999999865210 0111110 00000 11111 2233455566678899999997542
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
-+......+.+++.++. ..+|.+|+.++.
T Consensus 101 -------LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 101 -------LDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred -------CCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 13344445555565441 245566666543
No 405
>PRK13808 adenylate kinase; Provisional
Probab=96.81 E-value=0.0035 Score=66.49 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
-|+|+||||+|||++++.||..++++.+ +..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 3899999999999999999999987655 4455543
No 406
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.81 E-value=0.0059 Score=65.29 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 407
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.80 E-value=0.017 Score=61.18 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
..|.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346679999999999999999998865 5556666654
No 408
>PTZ00202 tuzin; Provisional
Probab=96.80 E-value=0.043 Score=60.13 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=51.4
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
+-...+.+|.++...+|.+++..+. ...|+-+.|+||+|||||++++.++..++.+.++++...
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 3457789999999999988886422 234557899999999999999999999998877777643
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.79 E-value=0.0076 Score=57.34 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
++++||||+|||++++.+|..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6899999999999999998764 667878877643
No 410
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.79 E-value=0.0022 Score=68.38 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=47.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeec-hhHHH-------H-----hhhhhhhHHHHHHHHHhhCCCeE
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISG-SEFVE-------M-----FVGVGASRVRDLFKKAKENAPCI 326 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~-s~~~~-------~-----~vG~~~~~vr~lF~~A~~~~P~I 326 (582)
+..+++|+.||+|+|||+++++++..... .++.+.- .++.- . ..+...-...++++.+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34458999999999999999999987532 2222211 11110 0 00112234667888899999999
Q ss_pred EEEeCCC
Q 007989 327 VFVDEID 333 (582)
Q Consensus 327 LfIDEID 333 (582)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 411
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.77 E-value=0.0037 Score=60.24 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=41.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEeechhHH----HHh---------------hh-------
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEFV----EMF---------------VG------- 306 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~-------------~~pfi~is~s~~~----~~~---------------vG------- 306 (582)
-.+++||||+|||+++..++... +.++++++.+.-. ..+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38999999999999999986643 3477788654322 111 00
Q ss_pred ----------hhhhHHHHHHHHHhh-CCCeEEEEeCCCccccc
Q 007989 307 ----------VGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 307 ----------~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~ 338 (582)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001123445555565 56899999999999643
No 412
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=65.15 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.++|.||||+|||++|+.+|+..+.+++. ..+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHH
Confidence 59999999999999999999999977664 344443
No 413
>PRK06547 hypothetical protein; Provisional
Probab=96.77 E-value=0.0014 Score=63.07 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
..+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3456799999999999999999999998887754
No 414
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.76 E-value=0.0011 Score=62.40 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
++|.||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987664 55444
No 415
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.76 E-value=0.0015 Score=62.08 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
+.++|+|+||+|||++++.+|.+++.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 416
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.76 E-value=0.021 Score=58.03 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhHHH---Hh-----hhh---------hhhH----HHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE---MF-----VGV---------GASR----VRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~~~---~~-----vG~---------~~~~----vr~lF~~A 319 (582)
.|-.+++.|++|||||++++.+-....- +.+.+-+..... .| +.. .-.+ +.......
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446999999999999999999765522 222222211111 01 000 0001 11121111
Q ss_pred hh---CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCcccee
Q 007989 320 KE---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 396 (582)
Q Consensus 320 ~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I 396 (582)
.. ..+++|++|++.. .....+.+.+++..-. +-++-+|..+.....+++.++. -.+..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 3368999999732 1123445667765322 3457777777777889998866 566666
Q ss_pred eccCCCHHHHHHHHHHH
Q 007989 397 TVDVPDIRGRTEILKVH 413 (582)
Q Consensus 397 ~i~~Pd~~eR~~Il~~~ 413 (582)
-++ -+..+...|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 554 4555555555544
No 417
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.75 E-value=0.0088 Score=57.94 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=31.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhh
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~ 309 (582)
|.|+|.+|+|||++++.++...+.++ +++.++.......+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~--i~~D~~~~~~~~~~~ 42 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPV--IDADKIAHQVVEKGS 42 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EeCCHHHHHHHhcCC
Confidence 68999999999999999999866665 466777665554444
No 418
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0052 Score=60.55 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~ 288 (582)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8999999999999999999987
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.72 E-value=0.0017 Score=62.39 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
++.|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3469999999999999999999999999876653
No 420
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.72 E-value=0.0047 Score=64.09 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
++-+++.|+||||||++|+.++.+.. .+..++..++....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHh
Confidence 34689999999999999999999983 34566666665543
No 421
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.71 E-value=0.04 Score=57.70 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.|.-+++.|++|||||++|+.+|..++.+. .++++.+.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEechHHHH
Confidence 4577899999999999999999999999884 355555443
No 422
>PHA02774 E1; Provisional
Probab=96.71 E-value=0.0072 Score=67.98 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-eec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~-is~ 297 (582)
+.++|+||||||||++|-+|++.++..++. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 489999999999999999999998655543 553
No 423
>PRK08233 hypothetical protein; Provisional
Probab=96.71 E-value=0.005 Score=58.62 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~-~pfi~is~ 297 (582)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999885 45554443
No 424
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.70 E-value=0.034 Score=57.48 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
..|+-++|+||+|+|||+++..+|..+ +..+..+++.-
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456789999999999999999998755 56666666653
No 425
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.70 E-value=0.0035 Score=64.18 Aligned_cols=116 Identities=23% Similarity=0.239 Sum_probs=67.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEeechh-HH--------HHhhhh--------------h
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGSE-FV--------EMFVGV--------------G 308 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s~-~~--------~~~vG~--------------~ 308 (582)
.+...-.=|+||||+|||.|+-.+|-... ..+++++... |. +.+-.. .
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 33333466899999999999998876543 3477887543 21 111000 0
Q ss_pred ----hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 309 ----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 309 ----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
...+..+-.......-.+|+||-|-++.+..-.+ .+...++.+.+..++..+..+....++.||.+..
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 0111122222234556899999999997643221 1223467788888887777666666777765543
No 426
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.69 E-value=0.0037 Score=67.37 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=45.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEeec-hhHH-----------HHhhhhhhhHHHHHHHHHhhCCCeEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~-s~~~-----------~~~vG~~~~~vr~lF~~A~~~~P~ILf 328 (582)
.+|++||+|+|||++++++..+.. ..++.+.- .++. ..-+|.......+.++.+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987652 33444421 1211 011222223456677788888999999
Q ss_pred EeCCC
Q 007989 329 VDEID 333 (582)
Q Consensus 329 IDEID 333 (582)
+.|+.
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 427
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.69 E-value=0.01 Score=58.79 Aligned_cols=126 Identities=24% Similarity=0.360 Sum_probs=76.5
Q ss_pred cCchhhhhhcCCCCce--EEEEcCCCCcHHHHHHHHHHh---cCCCEEEeech----hHHHH------------------
Q 007989 251 KKPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS----EFVEM------------------ 303 (582)
Q Consensus 251 ~~p~~~~~~g~~~pkg--vLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s----~~~~~------------------ 303 (582)
.+.+.-+++|.-+|.| +++.|+.|||||.|.+.++-- -+....+++.. +|...
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444555677666655 888899999999999998652 24555555432 12110
Q ss_pred h-----------hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 304 F-----------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 304 ~-----------vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
+ .....+.+..+.+.-+.....+++||-+..+... + ..+.++++++.+..+....++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~---------~-~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY---------D-SEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc---------c-cHHHHHHHHHHHHHHHhCCCEEE
Confidence 0 0111223444445445555679999999988532 1 23456677777766666655555
Q ss_pred EEecCccccccccccC
Q 007989 373 IAATNRADILDSALLR 388 (582)
Q Consensus 373 IaaTN~~~~LD~aLlr 388 (582)
+ |-+|+.++++.+-
T Consensus 163 l--Tvhp~~l~e~~~~ 176 (235)
T COG2874 163 L--TVHPSALDEDVLT 176 (235)
T ss_pred E--EeChhhcCHHHHH
Confidence 5 3357778877765
No 428
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.075 Score=57.31 Aligned_cols=50 Identities=4% Similarity=-0.011 Sum_probs=34.3
Q ss_pred eeeccCCCHHHHHHHHHHHcCCCCCC----ccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 395 QVTVDVPDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~----~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
.|+++..+.+|-.+++..+++..-+. .+...+++-.... .+++.++.+|-
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSn-gNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSN-GNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcC-CCHHHHHHHHH
Confidence 47788899999999999887654333 2334555655664 48887777663
No 429
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.67 E-value=0.0073 Score=59.27 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 599999999999999999983
No 430
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.66 E-value=0.0072 Score=57.77 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=57.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhH--------HHH--hh---------------hhhhhHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEM--FV---------------GVGASRVRDLFKK 318 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~--------~~~--~v---------------G~~~~~vr~lF~~ 318 (582)
-+.|.||+|+|||+|.+.+++.... =-+.+++.+. ... |+ =.+-.+-+-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999986411 0011221111 000 00 0111223445666
Q ss_pred HhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 319 A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
|.-..|.++++||--+- -+....+.+.+++..+.. .+..+|.+|+..+
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 66778999999997542 244455566666665531 2345666666554
No 431
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0074 Score=57.55 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=58.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEeechhHH--------H----------Hh--------hhhhhhHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFV--------E----------MF--------VGVGASRVRDL 315 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~s~~~--------~----------~~--------vG~~~~~vr~l 315 (582)
..-+.|.||+|+|||+|.+.+++..... -+.+++.... . .+ ...+ .+-+-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHHHHH
Confidence 3469999999999999999999865210 0112221110 0 00 1111 122333
Q ss_pred HHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 316 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
+..+....|.++++||--+- -+......+.+++.++. . +..+|.+|+.++.+
T Consensus 107 la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~ 158 (171)
T cd03228 107 IARALLRDPPILILDEATSA----------LDPETEALILEALRALA---K--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHH
Confidence 55556678999999996442 23444556666666553 1 24566667765544
No 432
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.65 E-value=0.0099 Score=58.29 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA 285 (582)
-++|+||.|+|||+|.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 433
>PRK14528 adenylate kinase; Provisional
Probab=96.65 E-value=0.0018 Score=62.88 Aligned_cols=34 Identities=29% Similarity=0.664 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.+++.||||+|||++|+.+|...+++++. ..++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999988765 34443
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.65 E-value=0.006 Score=58.30 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 302 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~~ 302 (582)
..|.-++|.|+||+|||++|+.++..+. ...+.+++..+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 3456799999999999999999999875 3356666655544
No 435
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.64 E-value=0.008 Score=59.57 Aligned_cols=23 Identities=57% Similarity=0.661 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.+.||+|||||+||-+.|.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998755
No 436
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.64 E-value=0.0055 Score=64.95 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=46.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhh--------hHHH---HHHHHHhhCCCeEEEEeCCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA--------SRVR---DLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~--------~~vr---~lF~~A~~~~P~ILfIDEID 333 (582)
+.++|.|+||+|||+|++.++...+.+++.-.+.++.....+... ..+. .....+...++.+||+|- +
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-C
Confidence 369999999999999999999999999987666666544321000 1111 112334445667999995 5
Q ss_pred cc
Q 007989 334 AV 335 (582)
Q Consensus 334 ~l 335 (582)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 54
No 437
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.63 E-value=0.0052 Score=65.29 Aligned_cols=83 Identities=22% Similarity=0.414 Sum_probs=56.9
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhhcCCC-CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechhHHHHhhh
Q 007989 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 230 f~-dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~-pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~~~~~~vG 306 (582)
|+ ++.|+++.++++.+.+. ... .|... -+-++|.||+|+|||+|++.+-+-+ ..|++.+..+-..+....
T Consensus 59 f~~~~~G~~~~i~~lV~~fk---~AA----~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFK---SAA----QGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHHHHHHHHH---HHH----hccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 89999999886655443 322 12222 3468999999999999999997644 337777766655555555
Q ss_pred hhhhHHHHHHHHH
Q 007989 307 VGASRVRDLFKKA 319 (582)
Q Consensus 307 ~~~~~vr~lF~~A 319 (582)
..+..+|+.|..-
T Consensus 132 L~P~~~r~~~~~~ 144 (358)
T PF08298_consen 132 LFPKELRREFEDE 144 (358)
T ss_pred hCCHhHHHHHHHH
Confidence 5567777777654
No 438
>PRK14529 adenylate kinase; Provisional
Probab=96.63 E-value=0.0038 Score=62.69 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.++|.||||+|||++++.+|..++.+.+ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 3899999999999999999999998765 4444443
No 439
>PLN02199 shikimate kinase
Probab=96.63 E-value=0.011 Score=61.48 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
.|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 7999999999999999999999999987543
No 440
>PHA02624 large T antigen; Provisional
Probab=96.61 E-value=0.0039 Score=70.34 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCC
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGT 341 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~ 341 (582)
+..+.++|+||||||||+++.++++.++...+.++++.-...| .+.-+.. .-+.+||++-.-.-....
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F----------wL~pl~D--~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF----------ELGCAID--QFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH----------Hhhhhhh--ceEEEeeecccccccccc
Confidence 3334899999999999999999999997667777754322211 1111111 237788887543221100
Q ss_pred -CCCCCChHHHHHHHHHHhhhcCc-c-------CCC-C---eEEEEecCccccccccccCCCCccceeecc
Q 007989 342 -GIGGGNDEREQTLNQLLTEMDGF-E-------GNT-G---IIVIAATNRADILDSALLRPGRFDRQVTVD 399 (582)
Q Consensus 342 -~~~~~~~e~~~~L~~LL~~ld~~-~-------~~~-~---viVIaaTN~~~~LD~aLlrpgRFdr~I~i~ 399 (582)
..+.+-+ -+..|-..+||. . .+. . --.|.|||. ..|+..+.- ||-+++.|.
T Consensus 497 Lp~G~~~d----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 497 LPSGQGMN----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred CCcccccc----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 0000110 123444555654 1 000 1 135667774 567777777 898888874
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0032 Score=60.37 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
-++++|.||||||++++.++ ++|.+++.++ +|..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~--el~~ 35 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN--ELAK 35 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH--HHHH
Confidence 38999999999999999999 8898877654 6554
No 442
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.60 E-value=0.0068 Score=73.84 Aligned_cols=134 Identities=22% Similarity=0.278 Sum_probs=90.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH------HHhhhhhhh---HHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV------EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~------~~~vG~~~~---~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
.+||.||..+|||+....+|.+.|..|+.++-.+.. ..|+..... --..++-.|.+.. ..|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 599999999999999999999999999999865433 233322111 1223444444332 47889998664
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcC---------ccCCCCeEEEEecCccc------cccccccCCCCccceeeccCC
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVTVDVP 401 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~---------~~~~~~viVIaaTN~~~------~LD~aLlrpgRFdr~I~i~~P 401 (582)
....-..+|.||..-.. ..+++++.+.||-|+|- .|..|++. ||- .++|.--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 34566778888864221 23456788999999875 46777877 884 5666555
Q ss_pred CHHHHHHHHHHHc
Q 007989 402 DIRGRTEILKVHG 414 (582)
Q Consensus 402 d~~eR~~Il~~~l 414 (582)
..++...||...+
T Consensus 1035 pedEle~ILh~rc 1047 (4600)
T COG5271 1035 PEDELEEILHGRC 1047 (4600)
T ss_pred cHHHHHHHHhccC
Confidence 5677777776544
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0097 Score=55.76 Aligned_cols=104 Identities=29% Similarity=0.408 Sum_probs=59.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEeechhHHH-------H---h---hhhhhhHHHHHHHHHhhCCCeEEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFVE-------M---F---VGVGASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~s~~~~-------~---~---vG~~~~~vr~lF~~A~~~~P~ILfI 329 (582)
.-+.|.||+|+|||+|.+++++..... -+++++.+... . + ...++ +.+-.+..+....|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~-~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQ-RQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHH-HHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999875321 12233221110 0 0 11122 2233455555667899999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
||...= -+......+.+++.++.. . +..++.+|+..+.+.
T Consensus 105 DEp~~~----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 105 DEPTSG----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred eCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 998653 233444555566655421 2 235566666655443
No 444
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.59 E-value=0.0021 Score=61.58 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
-+++.||||+|||++++.++.++|.+. +++.++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999988665 4555544
No 445
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.58 E-value=0.012 Score=56.96 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=55.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCC--EEEeechhH--H-HH-hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEF--V-EM-FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~p--fi~is~s~~--~-~~-~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r 339 (582)
-+.|.||.|+|||+|.+.+++..... -+.+++..+ . .. ....+ .+.+-.+..+....|.++++||--.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts~---- 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSAY---- 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCccc----
Confidence 58899999999999999999864110 011111100 0 00 01112 23344455666678999999997542
Q ss_pred CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
-+....+.+..++.++. ...+..+|.+|+..+
T Consensus 102 ------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 102 ------LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred ------CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 23444445555555442 122234555666544
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0019 Score=61.26 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
+-+.||||||||++|+-+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6788999999999999999999999885
No 447
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.58 E-value=0.0049 Score=57.46 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=29.1
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 269 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 269 L~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
|.||||+|||++|+.+|.+.+. ..++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6799999999999999999875 5667777776544
No 448
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.57 E-value=0.015 Score=65.38 Aligned_cols=42 Identities=29% Similarity=0.284 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~ 301 (582)
|.+...-+|++|+||+|||+++..++.+. |-++++++..+-.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 34445569999999999999999875432 6788888875443
No 449
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.57 E-value=0.0054 Score=49.81 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc-CCCEEEeec
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~-~~pfi~is~ 297 (582)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 344444443
No 450
>PRK02496 adk adenylate kinase; Provisional
Probab=96.57 E-value=0.0022 Score=61.80 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
-+++.||||+|||++|+.+|...+.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999877654
No 451
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.55 E-value=0.0022 Score=63.41 Aligned_cols=34 Identities=41% Similarity=0.784 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
|++.||||+|||++|+.+|...+++.+. ..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999877654 445543
No 452
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.045 Score=55.57 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=100.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH---Hhhh--hhhhHHHHHHH---HHhhC---CC-eEE
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE---MFVG--VGASRVRDLFK---KAKEN---AP-CIV 327 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~---~~vG--~~~~~vr~lF~---~A~~~---~P-~IL 327 (582)
+.+.|.-+||=|+||+|||++|.-+|.++|.+-+. +...+.+ ..++ ..+..-...|. ..+.. .| +.=
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaG 163 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAG 163 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhh
Confidence 34557789999999999999999999999987552 3322222 2222 01111112222 11111 11 001
Q ss_pred EEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHH
Q 007989 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 407 (582)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~ 407 (582)
|.|....+ ....+.++..-+++ ..++++=+.-=-|..+++..+.. -...+.+-.+|.+.-+
T Consensus 164 F~dqa~~V-----------~~GI~~VI~RAi~e------G~~lIIEGvHlVPg~i~~~~~~~--n~~~~~l~i~dee~Hr 224 (299)
T COG2074 164 FEDQASAV-----------MVGIEAVIERAIEE------GEDLIIEGVHLVPGLIKEEALGN--NVFMFMLYIADEELHR 224 (299)
T ss_pred HHHHhHHH-----------HHHHHHHHHHHHhc------CcceEEEeeeeccccccHhhhcc--ceEEEEEEeCCHHHHH
Confidence 22322222 11122333333332 22333333333477777666532 2335666778877755
Q ss_pred HHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 007989 408 EILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 408 ~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g 474 (582)
.=|....+....+.. ....+.. -.++..+-+.....|...|-+.|+.+|+++++++++.-
T Consensus 225 ~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~ 284 (299)
T COG2074 225 ERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILED 284 (299)
T ss_pred HHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHH
Confidence 544433322211111 1122221 24677888888888888899999999999999988753
No 453
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.54 E-value=0.021 Score=59.30 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=68.3
Q ss_pred Cce-EEEEcCCCCcHHHHHHHHHHhcC----CCEEEee-chhHH---------HHhhhhhhhHHHHHHHHHhhCCCeEEE
Q 007989 264 PKG-VLLVGPPGTGKTLLAKAIAGEAG----VPFFSIS-GSEFV---------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (582)
Q Consensus 264 pkg-vLL~GPpGTGKT~LArAlA~e~~----~pfi~is-~s~~~---------~~~vG~~~~~vr~lF~~A~~~~P~ILf 328 (582)
|+| ||++||.|+|||+...++-...| ..++++. .-+|+ ..-+|.....+...++.|.+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 335 77789999999998888877653 2333331 11222 123444444556667777788999999
Q ss_pred EeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHH
Q 007989 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG 405 (582)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~e 405 (582)
+-|+-.. +++..-|..- .++-+|++|-..-+ |... .||.|.+-++..++
T Consensus 204 vGEmRD~----------------ETi~~ALtAA-----ETGHLV~~TLHT~s----A~~t---i~RiidvFp~~ek~ 252 (353)
T COG2805 204 VGEMRDL----------------ETIRLALTAA-----ETGHLVFGTLHTNS----AAKT---IDRIIDVFPAEEKD 252 (353)
T ss_pred EeccccH----------------HHHHHHHHHH-----hcCCEEEEeccccc----HHHH---HHHHHHhCChhhhH
Confidence 9998443 3555555533 35668888754322 2222 45566665555443
No 454
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.54 E-value=0.018 Score=63.19 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~~ 300 (582)
++.++|.||+|+|||+++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887643 456777777654
No 455
>PRK14527 adenylate kinase; Provisional
Probab=96.53 E-value=0.0022 Score=62.36 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.|+-++++||||+|||++|+.+|.+.+.+.+. ..++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 45679999999999999999999999876554 44444
No 456
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.53 E-value=0.0075 Score=70.16 Aligned_cols=67 Identities=28% Similarity=0.344 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCC
Q 007989 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 390 (582)
Q Consensus 311 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpg 390 (582)
+-|-.+..|--..|.||++||.-+- -+.+.++.+.+-|.++.. +..+|..|+++. .++
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~-----ti~-- 672 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLS-----TIR-- 672 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccch-----Hhh--
Confidence 3444566666788999999997543 255667777777776642 234555667654 344
Q ss_pred Cccceeecc
Q 007989 391 RFDRQVTVD 399 (582)
Q Consensus 391 RFdr~I~i~ 399 (582)
++|+.+.++
T Consensus 673 ~adrIiVl~ 681 (709)
T COG2274 673 SADRIIVLD 681 (709)
T ss_pred hccEEEEcc
Confidence 577766664
No 457
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.52 E-value=0.015 Score=55.28 Aligned_cols=100 Identities=32% Similarity=0.467 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC-----------CEEEeechh------HHHHh----hh--hhhhHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGSE------FVEMF----VG--VGASRVRDLFKKAK 320 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~-----------pfi~is~s~------~~~~~----vG--~~~~~vr~lF~~A~ 320 (582)
..-+.|.||.|+|||+|++.+++.... .+.++.... ..+.. .. .+-.+.+-.+..|.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999986421 111111110 00110 00 01123344556666
Q ss_pred hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
-..|.++++||-.+- -+....+.+.+++.++ +..+|.+|+.++
T Consensus 107 ~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 107 LHKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HcCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 678999999997543 2444555666666654 134555666543
No 458
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.52 E-value=0.019 Score=55.11 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=59.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhHH------HH---h----------------hh--hhhhHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV------EM---F----------------VG--VGASRVRD 314 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~~------~~---~----------------vG--~~~~~vr~ 314 (582)
...+.|.||+|+|||+|++.+++.... --+.+++.+.. .. | .. .+-.+.+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 346899999999999999999986421 01222221110 00 0 00 01122334
Q ss_pred HHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 315 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.+..|.-..|.++++||--+- -+....+.+.+++.++. + +..+|.+|+.++.+
T Consensus 108 ~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 455666678999999997543 24445566666666653 2 23555566655433
No 459
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.47 E-value=0.017 Score=62.20 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~ 301 (582)
.|..+++.||.|||||++.+++...+ +.+++.+..+...
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIA 62 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHH
Confidence 35689999999999999999997766 3345544433333
No 460
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.47 E-value=0.0091 Score=58.48 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=33.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechhHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEM 303 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~~~~~ 303 (582)
..|.-+++.|+||+|||+++..+..+. +..++.++..+|...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 567889999999999999999998887 778888998887653
No 461
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.47 E-value=0.0027 Score=62.93 Aligned_cols=34 Identities=41% Similarity=0.777 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
|+++||||+|||++|+.+|...+++.+. ..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 8999999999999999999999977665 444443
No 462
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.45 E-value=0.0079 Score=65.54 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.+.|.|.|++|||||+|+++||...|.+++.--+.++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 457999999999999999999999998876554444443
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.027 Score=53.81 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=57.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechh-------HHH----------Hhhh---------hhhhHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE-------FVE----------MFVG---------VGASRVRDLFK 317 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~-------~~~----------~~vG---------~~~~~vr~lF~ 317 (582)
-+.|.||+|+|||+|.+.+++.... =-+.+++.+ +.. .+.+ .+-.+.+-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 5899999999999999999985410 001111100 000 0000 11122344466
Q ss_pred HHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 318 ~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
.+....|.++++||-.+- -+......+.+++.++. .. +..+|.+|+.++
T Consensus 108 ral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 108 QALLHDPELLILDEPTSG----------LDPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 666778999999997553 24445556666666553 12 345666666554
No 464
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.41 E-value=0.016 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA 285 (582)
++..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999983
No 465
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.40 E-value=0.016 Score=59.12 Aligned_cols=44 Identities=41% Similarity=0.550 Sum_probs=34.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~ 303 (582)
|.+..+.+|++|+||||||+++..++.+ .|.|+++++.++-.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 4455567999999999999999888553 3889999997665443
No 466
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.39 E-value=0.0065 Score=59.21 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999997764
No 467
>PRK01184 hypothetical protein; Provisional
Probab=96.38 E-value=0.0031 Score=60.70 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
-++|+||||+|||++++ ++.+.|++++.. ++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~l 35 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVI 35 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHH
Confidence 58999999999999998 788999888654 3444
No 468
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.37 E-value=0.005 Score=65.67 Aligned_cols=69 Identities=26% Similarity=0.374 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEee-chhHHH-------Hh------hhhhhhHHHHHHHHHhhCCCeEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE-------MF------VGVGASRVRDLFKKAKENAPCIVF 328 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is-~s~~~~-------~~------vG~~~~~vr~lF~~A~~~~P~ILf 328 (582)
+++++.|++|+|||++.+++.....- ..+.+. ..++.- .. .|.+.-...++++.+.+..|..|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 48999999999999999999876521 122221 111110 00 112233567889999999999999
Q ss_pred EeCCC
Q 007989 329 VDEID 333 (582)
Q Consensus 329 IDEID 333 (582)
+.|+-
T Consensus 259 vGEiR 263 (340)
T TIGR03819 259 VGEVR 263 (340)
T ss_pred EeCcC
Confidence 99983
No 469
>PF13245 AAA_19: Part of AAA domain
Probab=96.36 E-value=0.0052 Score=51.15 Aligned_cols=32 Identities=41% Similarity=0.564 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHhc------CCCEEEeec
Q 007989 266 GVLLVGPPGTGKT-LLAKAIAGEA------GVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT-~LArAlA~e~------~~pfi~is~ 297 (582)
-+++.|||||||| ++++.++... +..++.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 3556999999999 5556665544 445666654
No 470
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0027 Score=56.44 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~ 288 (582)
|+|.|+||+|||++|+.++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 471
>PRK04182 cytidylate kinase; Provisional
Probab=96.34 E-value=0.0036 Score=59.43 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
-|+|.|+||+|||++|+.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998764
No 472
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.34 E-value=0.04 Score=60.47 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh--------hh-h---h-hhHHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF--------VG-V---G-ASRVRDLFKK 318 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~--------vG-~---~-~~~vr~lF~~ 318 (582)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+ .. . . ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999999998765 66777777754321 00 10 0 0 1123345566
Q ss_pred HhhCCCeEEEEeCCCc
Q 007989 319 AKENAPCIVFVDEIDA 334 (582)
Q Consensus 319 A~~~~P~ILfIDEID~ 334 (582)
++...-.+||||=...
T Consensus 178 ~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 178 FKKENFDIIIVDTSGR 193 (429)
T ss_pred HHhCCCCEEEEECCCC
Confidence 6555567899887643
No 473
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.016 Score=55.23 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
+.-+.|.|+||+|||++|+.++..+ +..+..+++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999999999999999876 44567777765543
No 474
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.31 E-value=0.012 Score=68.78 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=56.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---C--CCEEEeechhH----HHHhhhhhhhHHHHHHHHHh----------hCCCeE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---G--VPFFSISGSEF----VEMFVGVGASRVRDLFKKAK----------ENAPCI 326 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~--~pfi~is~s~~----~~~~vG~~~~~vr~lF~~A~----------~~~P~I 326 (582)
-++|.|+||||||++++++...+ + .+++.+..+.- .....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999995533 4 45554432211 11112333333444443211 123469
Q ss_pred EEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
|+|||+..+. ...+..|+..+ .....+++++=.+...
T Consensus 420 lIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 420 LIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQLP 456 (720)
T ss_pred EEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECcccccc
Confidence 9999998871 23456666543 3456677777666533
No 475
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.31 E-value=0.016 Score=62.84 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-++|+||||+|||+|++.+++..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhh
Confidence 49999999999999999999875
No 476
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.025 Score=63.32 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeech
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s 298 (582)
..+.+.|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 34578999999999999999998753 2345555543
No 477
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.30 E-value=0.17 Score=55.92 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=45.6
Q ss_pred eeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 007989 395 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~ 473 (582)
.+.+-.+|.++-++-|....+....... .+...+ +-..|..+=+.....|...+-+.|+..++++.+++++.
T Consensus 386 ~flv~isdeeeH~~Rf~~Ra~~~~~~r~--~~ky~~-----~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l~ 457 (475)
T PRK12337 386 PMLVTLPDEALHRRRFELRDRETGASRP--RERYLR-----HFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKALE 457 (475)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccCCCc--hhHHHH-----hHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 3566678888777666655544332222 222222 33456665566666777778899999999999988754
No 478
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.016 Score=57.38 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-----hcCCCEE--E------------eechh----HHHHhhhhhhhHHHHHHHHHhh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPFF--S------------ISGSE----FVEMFVGVGASRVRDLFKKAKE 321 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~-----e~~~pfi--~------------is~s~----~~~~~vG~~~~~vr~lF~~A~~ 321 (582)
+-++|.||.|+|||++.+.++. ..|+++- + +...+ -.+.|.. ..+++..++..+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~-e~~~~~~il~~~-- 106 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFAS-EMSETAYILDYA-- 106 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHH-HHHHHHHHHHhc--
Confidence 4599999999999999999964 3343211 0 00110 0111221 122334444433
Q ss_pred CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
..|+++++||+..= ....+.......+++.+.. .+..+|.+|...+..+
T Consensus 107 ~~~~lvllDE~~~g---------t~~~~~~~l~~~il~~l~~----~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 107 DGDSLVLIDELGRG---------TSSADGFAISLAILECLIK----KESTVFFATHFRDIAA 155 (204)
T ss_pred CCCcEEEeccccCC---------CCHHHHHHHHHHHHHHHHh----cCCEEEEECChHHHHH
Confidence 45789999998441 1122333334445555432 2456777888766544
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.26 E-value=0.016 Score=65.14 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=49.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhh------hh----------------------h
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------G 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~v------G~----------------------~ 308 (582)
|......++++||||+|||+++..++.+. |-++++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34444568999999999999999987644 77888887643322110 00 0
Q ss_pred hhHHHHHHHHHhhCCCeEEEEeCCCccc
Q 007989 309 ASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (582)
Q Consensus 309 ~~~vr~lF~~A~~~~P~ILfIDEID~l~ 336 (582)
...+..+.+......|.+++||-+..+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 1112223333445678899999998874
No 480
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.26 E-value=0.006 Score=65.09 Aligned_cols=26 Identities=58% Similarity=0.885 Sum_probs=22.0
Q ss_pred CCCCce--EEEEcCCCCcHHHHHHHHHH
Q 007989 261 ARIPKG--VLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 261 ~~~pkg--vLL~GPpGTGKT~LArAlA~ 286 (582)
..+.+| +-|.||+||||||+.|.||+
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 444455 77999999999999999998
No 481
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.26 E-value=0.018 Score=61.86 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=42.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC------CCEEEeechhHHHH---------------hhhhhhhHHHHHHHHHhhCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG------VPFFSISGSEFVEM---------------FVGVGASRVRDLFKKAKENAP 324 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~------~pfi~is~s~~~~~---------------~vG~~~~~vr~lF~~A~~~~P 324 (582)
.++++||+|+|||+++++++++.. ..++.+ .+-++. -++.........++.+.+..|
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 599999999999999999988752 223222 111110 011111234556666778899
Q ss_pred eEEEEeCCC
Q 007989 325 CIVFVDEID 333 (582)
Q Consensus 325 ~ILfIDEID 333 (582)
.++++.|+.
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999973
No 482
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.23 E-value=0.0044 Score=58.37 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
|.++|++|+|||++|+.+|+.++.|++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988754
No 483
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.23 E-value=0.0041 Score=58.69 Aligned_cols=34 Identities=35% Similarity=0.630 Sum_probs=24.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
|.|+|+||||||+|+++++.. |.+++.-.+.++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~ 35 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREII 35 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHH
Confidence 789999999999999999998 8887744444444
No 484
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.22 E-value=0.014 Score=64.57 Aligned_cols=96 Identities=21% Similarity=0.345 Sum_probs=62.9
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCCcHHHHHHHHHHhcCCCEE-EeechhHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFF-SISGSEFVE 302 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkg-vLL~GPpGTGKT~LArAlA~e~~~pfi-~is~s~~~~ 302 (582)
....+|+++.......+.+.+++. . |.| +|++||.|+|||+...++..+++-+.. .++.+|=++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---R-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---C-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 346788888888887777666654 2 445 667799999999999999888865544 333333333
Q ss_pred Hhh-hhh--------hhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 303 MFV-GVG--------ASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 303 ~~v-G~~--------~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
... |.. .-.....++...+..|+||.+.||--
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 110 100 01123445556678999999999944
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.02 Score=55.01 Aligned_cols=104 Identities=25% Similarity=0.405 Sum_probs=57.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechh--------HHHH--h-------hhh------------hhhHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEM--F-------VGV------------GASRVR 313 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~--------~~~~--~-------vG~------------~~~~vr 313 (582)
.-+.|.||+|+|||+|.+.+++.... =-+.+++.+ +... | +|. +-.+-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 36899999999999999999986411 011222211 0000 0 010 011223
Q ss_pred HHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 314 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
-.+..+.-..|.++++||--+= -+....+.+.+++.++.. ..+..+|.+|+.++.
T Consensus 106 l~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 3455555678999999997542 244455566666665531 213455666666553
No 486
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.18 E-value=0.012 Score=65.72 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=58.6
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCce-EEEEcCCCCcHHHHHHHHHHhcC---CCEEEeec-hhH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-SEF 300 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkg-vLL~GPpGTGKT~LArAlA~e~~---~pfi~is~-s~~ 300 (582)
...+++++.-.++..+.+.+++. . |+| ++++||+|+|||++.+++..+.+ ..++++.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34678887666666666665553 2 235 78999999999999998877653 33444321 111
Q ss_pred HHHh-----hhh-hhhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 301 VEMF-----VGV-GASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 301 ~~~~-----vG~-~~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
.-.. +.. ......+..+.+.+..|++|++.|+..
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 110 012345566677788999999999843
No 487
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.16 E-value=0.021 Score=69.23 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=50.2
Q ss_pred eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc--cccccccCCCCccceeeccCCC
Q 007989 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~--~LD~aLlrpgRFdr~I~i~~Pd 402 (582)
-+|+|||+..|.... .++.+..+..|.. .....+|.+|.+|.+|+ .|...+.. -|..+|-+..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~kevE~lI~rLAq----kGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKKVEELIARLAQ----KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHHHHHHHHHHHH----HhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 489999998874321 2333444444443 23356899999999986 45555555 677788888888
Q ss_pred HHHHHHHHHH
Q 007989 403 IRGRTEILKV 412 (582)
Q Consensus 403 ~~eR~~Il~~ 412 (582)
..+-+.||..
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 8887777743
No 488
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.16 E-value=0.0071 Score=57.40 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
|.-|+|+|.||+|||++|+++...+ +.+.+.+++..+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3468999999999999999998765 78888888866553
No 489
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.023 Score=61.30 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 237 DEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 237 d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
+.++..+.+.+.. +.-+.. .....++-++|+||+|+|||+++..+|..+ +.++..+++..+
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~---~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDS---FDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCC---ceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4566666665554 211111 123446679999999999999999998755 556666666544
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.14 E-value=0.026 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..+.|.||+|+|||+|.+.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.13 E-value=0.016 Score=55.20 Aligned_cols=29 Identities=28% Similarity=0.158 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFS 294 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~ 294 (582)
-+.+|+++|.|||++|-++|-++ |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37788999999999999996654 555544
No 492
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.12 E-value=0.016 Score=68.04 Aligned_cols=71 Identities=23% Similarity=0.213 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHh----hhhhhhHHHHHHHHHh-----hCCCeEEEEeCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF----VGVGASRVRDLFKKAK-----ENAPCIVFVDEI 332 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~----vG~~~~~vr~lF~~A~-----~~~P~ILfIDEI 332 (582)
+-++|.|+||||||++++++... .|..++.+..+.-...- .|..+..+..+..... -....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 35799999999999999999543 46666666443332221 2222223333321111 123479999999
Q ss_pred Ccc
Q 007989 333 DAV 335 (582)
Q Consensus 333 D~l 335 (582)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 777
No 493
>PRK10436 hypothetical protein; Provisional
Probab=96.11 E-value=0.018 Score=63.89 Aligned_cols=92 Identities=17% Similarity=0.333 Sum_probs=58.4
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEeechhHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISGSEFVEM 303 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~---pfi~is~s~~~~~ 303 (582)
..+++++.-.++..+.+++++. .+ ..-+|++||+|+|||++..++..+.+- .++++ .+=++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---~~----------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti--EDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---QP----------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV--EDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---hc----------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe--cCCccc
Confidence 4578888766666666666553 12 114889999999999999887666532 33333 222221
Q ss_pred h--------hh-hhhhHHHHHHHHHhhCCCeEEEEeCCC
Q 007989 304 F--------VG-VGASRVRDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 304 ~--------vG-~~~~~vr~lF~~A~~~~P~ILfIDEID 333 (582)
. ++ .........++.+.+..|++|+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 0 11 111235667777888999999999984
No 494
>PF13479 AAA_24: AAA domain
Probab=96.08 E-value=0.0079 Score=59.75 Aligned_cols=67 Identities=24% Similarity=0.380 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH---HHHh------hhhhhhHHHHHHHHH--hhCCCeEEEEeCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---VEMF------VGVGASRVRDLFKKA--KENAPCIVFVDEI 332 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~---~~~~------vG~~~~~vr~lF~~A--~~~~P~ILfIDEI 332 (582)
+..++||||||+|||++|..+ +-|+ .+++..= ...+ .-.....+.+.++.+ ....-.+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346999999999999999888 3333 2332211 1000 001233445555443 2234469999998
Q ss_pred Ccc
Q 007989 333 DAV 335 (582)
Q Consensus 333 D~l 335 (582)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 875
No 495
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.07 E-value=0.012 Score=54.36 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~p 291 (582)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 368999999999999999999998864
No 496
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.06 E-value=0.039 Score=53.78 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
...+.|.||+|+|||+|.+.+++..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999875
No 497
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.05 E-value=0.032 Score=60.06 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-.+|+||||||||+|++.+++..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998865
No 498
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.05 E-value=0.04 Score=66.98 Aligned_cols=178 Identities=20% Similarity=0.209 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCCcHHHH-HHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhC---------------CCeE
Q 007989 263 IPKGVLLVGPPGTGKTLL-AKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN---------------APCI 326 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~L-ArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~---------------~P~I 326 (582)
.-++++++||||+|||.| .-++-.+.-..+++++-+.-.. ++..++ .+++-... .--|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLS-VLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHH-HHHhhceeeccCCeEEEccCcchhheE
Confidence 346999999999999986 4567777777777776543211 111222 12211110 0139
Q ss_pred EEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC--------CCCeEEEEecCccccccccccCCCCccc---e
Q 007989 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--------NTGIIVIAATNRADILDSALLRPGRFDR---Q 395 (582)
Q Consensus 327 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~--------~~~viVIaaTN~~~~LD~aLlrpgRFdr---~ 395 (582)
||.|||. +-..+.-. .+..--.+.+|+. -.||-. -.++++.+|+|++..... .--|.||-| .
T Consensus 1567 LFcDeIn-Lp~~~~y~----~~~vI~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~ 1639 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYY----PPTVIVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVF 1639 (3164)
T ss_pred EEeeccC-CccccccC----CCceEEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceE
Confidence 9999998 42222111 1100011222222 233322 247999999998764320 222335655 6
Q ss_pred eeccCCCHHHHHHHHHHHcCCCCCCc-c------------ccH--------HHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 007989 396 VTVDVPDIRGRTEILKVHGSNKKFDA-D------------VSL--------DVIAMRTPGFSGADLANLLNEAAILAGR 453 (582)
Q Consensus 396 I~i~~Pd~~eR~~Il~~~l~~~~l~~-d------------vdl--------~~lA~~t~G~sgadL~~lv~eA~~~A~r 453 (582)
+++..|.......|.+.++....+-. + +.+ ....+.--||+|+||-..++...-.|..
T Consensus 1640 vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT 1718 (3164)
T COG5245 1640 VFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAET 1718 (3164)
T ss_pred EEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhc
Confidence 77899999999898887665432211 1 000 0001112469999999988877666643
No 499
>PRK14526 adenylate kinase; Provisional
Probab=96.03 E-value=0.0062 Score=60.61 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.++|.||||+|||++++.+|+..+.+++ ++.++..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHHH
Confidence 3889999999999999999999887654 4555543
No 500
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.02 E-value=0.0091 Score=57.69 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=34.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
-|+|.|+|-+|||++|++|...+..||+.++...|.++
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 58999999999999999999999999999999999984
Done!