Query 007989
Match_columns 582
No_of_seqs 683 out of 4121
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 5.7E-71 2E-75 603.7 36.4 361 220-582 4-367 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.8E-69 6.3E-74 595.0 33.6 370 208-582 9-380 (499)
3 4b4t_J 26S protease regulatory 100.0 4.9E-55 1.7E-59 466.1 28.1 259 219-477 136-395 (405)
4 4b4t_I 26S protease regulatory 100.0 9.5E-54 3.3E-58 457.6 28.5 260 218-477 169-429 (437)
5 4b4t_H 26S protease regulatory 100.0 3.1E-53 1.1E-57 457.5 27.5 261 218-478 196-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 2.6E-52 8.8E-57 450.8 29.1 256 219-474 169-425 (437)
7 4b4t_M 26S protease regulatory 100.0 1.1E-52 3.8E-57 453.3 24.2 256 219-474 169-425 (434)
8 4b4t_K 26S protease regulatory 100.0 2.2E-51 7.5E-56 442.8 27.5 256 219-474 160-417 (428)
9 3cf2_A TER ATPase, transitiona 100.0 4.9E-46 1.7E-50 427.1 9.9 231 224-454 470-701 (806)
10 3cf2_A TER ATPase, transitiona 100.0 2.6E-43 8.9E-48 404.5 26.0 274 224-500 197-491 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 3.7E-41 1.3E-45 338.4 26.3 255 221-475 2-256 (257)
12 3cf0_A Transitional endoplasmi 100.0 3.7E-39 1.3E-43 332.8 24.4 248 224-471 8-281 (301)
13 2x8a_A Nuclear valosin-contain 100.0 4E-39 1.4E-43 329.1 21.0 247 225-474 4-267 (274)
14 3h4m_A Proteasome-activating n 100.0 4.5E-38 1.5E-42 319.7 26.4 254 222-475 8-262 (285)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.6E-38 5.6E-43 318.0 20.5 253 226-478 1-256 (262)
16 1ixz_A ATP-dependent metallopr 100.0 3E-37 1E-41 309.4 27.2 246 223-468 8-253 (254)
17 1iy2_A ATP-dependent metallopr 100.0 6E-37 2E-41 312.0 27.1 260 208-468 18-277 (278)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.6E-37 2.3E-41 319.4 24.0 225 224-454 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 3.8E-37 1.3E-41 320.5 21.8 229 221-455 8-239 (322)
20 3hu3_A Transitional endoplasmi 100.0 7.1E-36 2.4E-40 328.2 25.2 264 226-495 199-480 (489)
21 2qp9_X Vacuolar protein sortin 100.0 7.3E-36 2.5E-40 315.5 23.7 226 223-454 43-271 (355)
22 2r62_A Cell division protease 100.0 3.1E-38 1.1E-42 318.4 5.0 251 224-474 4-256 (268)
23 2zan_A Vacuolar protein sortin 100.0 2E-34 6.7E-39 313.4 22.9 227 222-454 125-355 (444)
24 3d8b_A Fidgetin-like protein 1 100.0 2.1E-32 7.2E-37 289.1 24.2 245 224-474 77-337 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 2.3E-32 8E-37 279.5 20.8 244 222-471 12-272 (297)
26 1ypw_A Transitional endoplasmi 100.0 3.2E-35 1.1E-39 340.8 -3.9 233 223-455 469-702 (806)
27 3vfd_A Spastin; ATPase, microt 100.0 1.3E-31 4.4E-36 285.8 23.6 246 221-472 105-366 (389)
28 3t15_A Ribulose bisphosphate c 100.0 5.3E-32 1.8E-36 278.6 9.3 228 259-501 31-281 (293)
29 1ypw_A Transitional endoplasmi 100.0 9.7E-29 3.3E-33 286.5 25.9 247 224-473 197-461 (806)
30 2di4_A Zinc protease, cell div 100.0 3.3E-30 1.1E-34 256.6 6.0 110 473-582 2-112 (238)
31 2c9o_A RUVB-like 1; hexameric 99.9 7.4E-27 2.5E-31 254.4 0.8 205 225-446 31-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 6.4E-24 2.2E-28 217.6 15.7 223 230-465 29-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 3.1E-23 1.1E-27 217.6 17.8 253 226-505 39-363 (368)
34 3pfi_A Holliday junction ATP-d 99.9 2.6E-22 9E-27 208.6 22.3 223 220-471 18-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 2.2E-21 7.5E-26 199.8 19.5 218 224-471 5-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 6.8E-21 2.3E-25 194.2 15.8 235 231-470 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.3E-20 4.4E-25 190.5 15.7 210 229-449 31-247 (272)
38 2z4s_A Chromosomal replication 99.8 3.6E-20 1.2E-24 201.0 18.4 221 226-472 100-333 (440)
39 3m6a_A ATP-dependent protease 99.8 5.6E-21 1.9E-25 212.5 11.9 225 226-470 76-340 (543)
40 3u61_B DNA polymerase accessor 99.8 4.2E-20 1.5E-24 191.0 16.7 210 218-470 13-236 (324)
41 2chg_A Replication factor C sm 99.8 2.5E-19 8.4E-24 171.8 19.3 206 221-469 7-224 (226)
42 2v1u_A Cell division control p 99.8 1.3E-19 4.4E-24 189.7 18.1 224 228-472 16-277 (387)
43 3hws_A ATP-dependent CLP prote 99.8 1.3E-19 4.4E-24 191.0 16.1 221 232-455 16-326 (363)
44 3pvs_A Replication-associated 99.8 1.5E-19 5.1E-24 196.5 16.8 207 223-470 18-243 (447)
45 1g41_A Heat shock protein HSLU 99.8 7.6E-21 2.6E-25 205.6 5.2 169 231-411 15-189 (444)
46 1l8q_A Chromosomal replication 99.8 6E-19 2.1E-23 182.7 18.3 218 226-472 6-241 (324)
47 1sxj_A Activator 1 95 kDa subu 99.8 1.4E-19 4.9E-24 199.9 13.1 231 216-470 24-273 (516)
48 3bos_A Putative DNA replicatio 99.8 1.5E-18 5.1E-23 169.5 16.1 206 226-469 23-241 (242)
49 2qby_B CDC6 homolog 3, cell di 99.8 1.9E-18 6.4E-23 181.6 17.3 213 229-472 18-271 (384)
50 1g8p_A Magnesium-chelatase 38 99.8 6.9E-18 2.4E-22 175.2 20.9 222 225-474 18-325 (350)
51 1njg_A DNA polymerase III subu 99.8 7.3E-18 2.5E-22 163.1 19.7 208 220-468 12-248 (250)
52 2r44_A Uncharacterized protein 99.8 2.9E-18 1E-22 177.8 17.4 217 228-474 24-300 (331)
53 1sxj_D Activator 1 41 kDa subu 99.8 3.2E-18 1.1E-22 177.8 16.2 214 217-469 23-261 (353)
54 1in4_A RUVB, holliday junction 99.8 2.6E-17 8.9E-22 171.9 22.8 221 223-472 17-251 (334)
55 2chq_A Replication factor C sm 99.8 5.2E-18 1.8E-22 173.2 15.3 206 220-468 6-223 (319)
56 1jbk_A CLPB protein; beta barr 99.8 2.4E-18 8.1E-23 161.1 11.3 160 226-410 17-194 (195)
57 1um8_A ATP-dependent CLP prote 99.8 7.3E-18 2.5E-22 178.3 16.1 234 231-467 21-361 (376)
58 2qby_A CDC6 homolog 1, cell di 99.8 8.9E-18 3E-22 175.4 16.6 223 227-472 16-273 (386)
59 1r6b_X CLPA protein; AAA+, N-t 99.7 1.3E-17 4.5E-22 192.0 17.0 222 226-472 181-434 (758)
60 1fnn_A CDC6P, cell division co 99.7 6.5E-17 2.2E-21 169.7 19.8 219 228-472 14-275 (389)
61 4fcw_A Chaperone protein CLPB; 99.7 2E-17 7E-22 169.1 15.4 205 231-452 17-279 (311)
62 3pxg_A Negative regulator of g 99.7 1.9E-17 6.5E-22 180.9 14.1 208 224-471 173-406 (468)
63 1iqp_A RFCS; clamp loader, ext 99.7 1E-16 3.4E-21 164.3 18.7 207 219-468 13-231 (327)
64 1sxj_B Activator 1 37 kDa subu 99.7 9.1E-17 3.1E-21 164.3 18.2 207 220-469 10-229 (323)
65 1jr3_A DNA polymerase III subu 99.7 1.1E-16 3.6E-21 167.5 19.0 206 222-468 7-241 (373)
66 2bjv_A PSP operon transcriptio 99.7 8.3E-18 2.8E-22 169.0 9.9 205 228-464 3-250 (265)
67 3te6_A Regulatory protein SIR3 99.7 1.4E-17 4.8E-22 173.1 10.4 214 233-472 22-316 (318)
68 1ojl_A Transcriptional regulat 99.7 1.5E-17 5.1E-22 171.8 10.4 203 231-465 2-246 (304)
69 1qvr_A CLPB protein; coiled co 99.7 1.8E-16 6.2E-21 185.0 17.2 204 225-454 164-395 (854)
70 3pxi_A Negative regulator of g 99.7 1.4E-16 4.9E-21 183.5 15.0 192 224-455 173-389 (758)
71 3pxi_A Negative regulator of g 99.7 3.2E-16 1.1E-20 180.6 16.9 199 231-451 491-724 (758)
72 2p65_A Hypothetical protein PF 99.7 1.1E-16 3.6E-21 149.9 10.4 154 225-402 16-187 (187)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.3E-16 4.6E-21 175.3 11.0 209 231-471 22-285 (500)
74 1r6b_X CLPA protein; AAA+, N-t 99.7 4.9E-16 1.7E-20 178.9 16.1 202 231-451 458-715 (758)
75 1sxj_C Activator 1 40 kDa subu 99.7 1E-15 3.4E-20 159.7 15.6 211 219-468 13-236 (340)
76 1sxj_E Activator 1 40 kDa subu 99.6 1.9E-15 6.5E-20 157.4 16.9 197 220-451 3-244 (354)
77 3f9v_A Minichromosome maintena 99.6 1.5E-16 5.3E-21 178.6 6.7 223 231-472 295-588 (595)
78 1qvr_A CLPB protein; coiled co 99.6 3.8E-15 1.3E-19 173.9 13.0 202 230-452 557-820 (854)
79 3co5_A Putative two-component 99.6 1.1E-15 3.9E-20 140.1 6.0 112 232-379 5-116 (143)
80 1w5s_A Origin recognition comp 99.6 5.5E-14 1.9E-18 148.7 19.3 227 228-472 19-294 (412)
81 3n70_A Transport activator; si 99.6 3.7E-15 1.3E-19 136.8 7.7 113 231-379 1-116 (145)
82 1ny5_A Transcriptional regulat 99.5 4.1E-14 1.4E-18 150.8 10.4 211 230-468 136-384 (387)
83 3k1j_A LON protease, ATP-depen 99.5 2.8E-13 9.4E-18 152.4 15.6 220 223-470 33-374 (604)
84 1a5t_A Delta prime, HOLB; zinc 99.5 7.1E-13 2.4E-17 138.2 17.4 160 262-448 22-209 (334)
85 3cmw_A Protein RECA, recombina 99.5 7.2E-14 2.5E-18 170.6 9.4 153 226-379 1015-1218(1706)
86 2krk_A 26S protease regulatory 99.4 1.1E-12 3.6E-17 110.8 8.9 78 397-474 7-84 (86)
87 3kw6_A 26S protease regulatory 99.4 1.2E-12 4.1E-17 108.0 9.1 76 399-474 1-76 (78)
88 3vlf_B 26S protease regulatory 99.3 1.9E-12 6.6E-17 109.5 8.6 79 402-480 2-80 (88)
89 2gno_A DNA polymerase III, gam 99.3 1.5E-11 5.2E-16 127.0 15.6 142 235-414 1-152 (305)
90 3dzd_A Transcriptional regulat 99.3 4.1E-12 1.4E-16 134.6 8.8 193 231-451 129-361 (368)
91 4akg_A Glutathione S-transfera 99.3 1.6E-11 5.3E-16 156.0 14.0 171 264-449 1267-1487(2695)
92 3ec2_A DNA replication protein 99.2 3.9E-11 1.3E-15 113.2 11.8 134 225-379 4-143 (180)
93 3aji_B S6C, proteasome (prosom 99.2 5.8E-11 2E-15 99.0 7.5 74 402-475 2-75 (83)
94 3f8t_A Predicted ATPase involv 99.1 2.6E-10 8.7E-15 123.4 11.2 215 233-473 215-485 (506)
95 2w58_A DNAI, primosome compone 99.1 2.6E-10 8.8E-15 109.3 9.9 103 226-335 20-127 (202)
96 2dzn_B 26S protease regulatory 99.0 4.7E-11 1.6E-15 99.5 2.5 73 404-476 1-73 (82)
97 2fna_A Conserved hypothetical 99.0 5.5E-09 1.9E-13 107.4 18.4 188 226-446 8-252 (357)
98 2vhj_A Ntpase P4, P4; non- hyd 99.0 9.2E-12 3.1E-16 129.1 -4.1 121 261-386 120-242 (331)
99 2qen_A Walker-type ATPase; unk 99.0 3E-08 1E-12 101.7 21.6 191 227-446 8-248 (350)
100 2kjq_A DNAA-related protein; s 98.9 2.2E-09 7.4E-14 99.2 9.1 104 264-399 36-146 (149)
101 2qgz_A Helicase loader, putati 98.9 2.5E-09 8.6E-14 110.4 7.9 101 227-335 120-226 (308)
102 2r2a_A Uncharacterized protein 98.7 7.4E-09 2.5E-13 100.5 4.9 130 264-406 5-158 (199)
103 4akg_A Glutathione S-transfera 98.7 1.9E-07 6.5E-12 119.2 18.4 165 265-451 646-840 (2695)
104 1svm_A Large T antigen; AAA+ f 98.6 3.1E-08 1E-12 105.2 6.2 120 259-400 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.6 1.3E-07 4.5E-12 117.3 11.2 117 260-376 1423-1561(2050)
106 1jr3_D DNA polymerase III, del 98.4 2E-06 6.8E-11 89.2 14.2 178 263-471 17-209 (343)
107 2c9o_A RUVB-like 1; hexameric 98.4 4.6E-07 1.6E-11 98.3 9.6 128 324-472 296-438 (456)
108 3vkg_A Dynein heavy chain, cyt 98.4 9.1E-07 3.1E-11 113.8 13.5 136 265-414 1305-1469(3245)
109 1tue_A Replication protein E1; 98.1 1.1E-06 3.9E-11 85.4 3.7 29 265-293 59-87 (212)
110 3vkg_A Dynein heavy chain, cyt 98.1 1.6E-05 5.6E-10 102.4 13.7 126 265-411 605-750 (3245)
111 2cvh_A DNA repair and recombin 98.0 1.3E-05 4.4E-10 76.7 8.7 39 261-299 17-55 (220)
112 1ye8_A Protein THEP1, hypothet 98.0 2.6E-05 8.8E-10 73.9 10.3 28 266-293 2-29 (178)
113 1u0j_A DNA replication protein 97.9 1.7E-05 5.7E-10 80.2 7.8 26 265-290 105-130 (267)
114 1n0w_A DNA repair protein RAD5 97.9 3.1E-05 1.1E-09 75.2 9.0 117 261-378 21-173 (243)
115 1z6t_A APAF-1, apoptotic prote 97.9 0.00027 9.2E-09 78.3 17.5 175 228-444 121-328 (591)
116 3upu_A ATP-dependent DNA helic 97.9 3.8E-05 1.3E-09 83.1 10.4 132 218-378 11-166 (459)
117 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.1E-05 7.2E-10 75.6 7.4 38 261-298 20-60 (235)
118 1xp8_A RECA protein, recombina 97.9 4.4E-05 1.5E-09 80.6 10.4 117 260-376 70-208 (366)
119 2zr9_A Protein RECA, recombina 97.8 1.8E-05 6.1E-10 83.0 6.5 78 260-337 57-153 (349)
120 2z43_A DNA repair and recombin 97.8 2.6E-05 9.1E-10 80.5 7.5 116 260-376 103-255 (324)
121 3hr8_A Protein RECA; alpha and 97.8 4.3E-05 1.5E-09 80.3 9.1 115 261-375 58-194 (356)
122 2ehv_A Hypothetical protein PH 97.8 7.6E-05 2.6E-09 72.7 10.0 129 261-400 27-207 (251)
123 1qhx_A CPT, protein (chloramph 97.7 8.2E-05 2.8E-09 69.0 8.9 40 264-303 3-42 (178)
124 3cmu_A Protein RECA, recombina 97.7 5.6E-05 1.9E-09 94.2 9.9 119 260-378 728-868 (2050)
125 3sfz_A APAF-1, apoptotic pepti 97.7 0.00094 3.2E-08 79.5 19.4 175 227-441 120-325 (1249)
126 1v5w_A DMC1, meiotic recombina 97.7 7.6E-05 2.6E-09 77.8 8.4 116 261-377 119-272 (343)
127 1u94_A RECA protein, recombina 97.6 9.5E-05 3.2E-09 77.7 8.7 78 260-337 59-155 (356)
128 2r8r_A Sensor protein; KDPD, P 97.6 0.001 3.6E-08 65.5 15.2 161 266-452 8-209 (228)
129 4a74_A DNA repair and recombin 97.6 0.00011 3.9E-09 70.5 7.5 38 261-298 22-68 (231)
130 3lda_A DNA repair protein RAD5 97.6 0.00011 3.8E-09 78.4 8.0 118 260-378 174-327 (400)
131 2orw_A Thymidine kinase; TMTK, 97.6 3.1E-05 1.1E-09 73.6 3.3 68 266-335 5-88 (184)
132 2dr3_A UPF0273 protein PH0284; 97.5 0.00037 1.3E-08 67.6 10.5 39 260-298 19-60 (247)
133 1g41_A Heat shock protein HSLU 97.5 0.00062 2.1E-08 73.5 13.1 151 311-468 240-430 (444)
134 3cmw_A Protein RECA, recombina 97.5 8.8E-05 3E-09 91.4 6.7 78 260-337 728-824 (1706)
135 2i1q_A DNA repair and recombin 97.5 0.00012 4.2E-09 75.1 6.9 115 260-375 94-255 (322)
136 3io5_A Recombination and repai 97.5 0.00029 9.8E-09 72.9 9.2 110 266-375 30-168 (333)
137 1pzn_A RAD51, DNA repair and r 97.5 0.00024 8.3E-09 74.3 8.7 40 260-299 127-175 (349)
138 2a5y_B CED-4; apoptosis; HET: 97.4 0.004 1.4E-07 68.7 18.5 164 234-434 131-328 (549)
139 2b8t_A Thymidine kinase; deoxy 97.4 0.0003 1E-08 69.1 8.0 69 266-335 14-101 (223)
140 1gvn_B Zeta; postsegregational 97.4 0.00038 1.3E-08 70.7 8.9 61 237-301 10-70 (287)
141 2zts_A Putative uncharacterize 97.4 0.00065 2.2E-08 65.9 9.8 39 260-298 26-68 (251)
142 3trf_A Shikimate kinase, SK; a 97.3 0.00011 3.8E-09 68.6 4.0 39 264-304 5-43 (185)
143 2p5t_B PEZT; postsegregational 97.3 0.00058 2E-08 67.7 9.0 41 261-301 29-69 (253)
144 1nlf_A Regulatory protein REPA 97.3 0.00049 1.7E-08 69.1 8.2 36 264-299 30-78 (279)
145 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.6E-09 66.7 4.9 34 261-294 2-35 (193)
146 3vaa_A Shikimate kinase, SK; s 97.2 0.00018 6E-09 68.6 4.1 39 263-303 24-62 (199)
147 3dm5_A SRP54, signal recogniti 97.2 0.0021 7.1E-08 69.4 12.8 73 263-335 99-194 (443)
148 2r6a_A DNAB helicase, replicat 97.2 0.00071 2.4E-08 73.1 9.0 39 260-298 199-241 (454)
149 2fz4_A DNA repair protein RAD2 97.1 0.0024 8.3E-08 62.7 11.5 37 266-302 110-147 (237)
150 1zp6_A Hypothetical protein AT 97.1 0.00036 1.2E-08 65.3 4.9 40 262-301 7-46 (191)
151 1kag_A SKI, shikimate kinase I 97.1 0.00068 2.3E-08 62.3 6.7 37 264-302 4-40 (173)
152 2q6t_A DNAB replication FORK h 97.1 0.00098 3.4E-08 71.8 8.9 39 260-298 196-238 (444)
153 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 9.8E-09 65.8 3.8 36 266-303 4-39 (184)
154 3kb2_A SPBC2 prophage-derived 97.1 0.00035 1.2E-08 63.9 4.2 31 266-296 3-33 (173)
155 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00099 3.4E-08 66.3 7.9 40 264-303 4-46 (260)
156 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 64.9 3.9 31 264-294 11-41 (180)
157 3jvv_A Twitching mobility prot 97.0 0.00093 3.2E-08 70.1 7.4 68 266-333 125-206 (356)
158 2cdn_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 65.6 4.5 38 262-301 18-55 (201)
159 2iut_A DNA translocase FTSK; n 97.0 0.002 7E-08 71.4 10.3 74 325-411 345-420 (574)
160 1via_A Shikimate kinase; struc 97.0 0.00038 1.3E-08 64.5 3.8 35 266-302 6-40 (175)
161 3e1s_A Exodeoxyribonuclease V, 97.0 0.00084 2.9E-08 74.9 7.2 96 266-378 206-317 (574)
162 1y63_A LMAJ004144AAA protein; 97.0 0.00039 1.3E-08 65.4 3.7 31 264-294 10-41 (184)
163 1zuh_A Shikimate kinase; alpha 97.0 0.00042 1.4E-08 63.7 3.8 37 265-303 8-44 (168)
164 2ius_A DNA translocase FTSK; n 97.0 0.0019 6.4E-08 71.0 9.5 76 324-412 297-375 (512)
165 1cr0_A DNA primase/helicase; R 97.0 0.001 3.4E-08 67.2 6.9 38 260-297 31-72 (296)
166 1ly1_A Polynucleotide kinase; 96.9 0.00087 3E-08 61.7 5.7 36 264-301 2-38 (181)
167 1qf9_A UMP/CMP kinase, protein 96.9 0.00046 1.6E-08 64.2 3.8 38 263-302 5-42 (194)
168 1tev_A UMP-CMP kinase; ploop, 96.9 0.00045 1.5E-08 64.4 3.5 37 264-302 3-39 (196)
169 3bh0_A DNAB-like replicative h 96.9 0.0025 8.7E-08 65.4 9.5 39 260-298 64-105 (315)
170 2pez_A Bifunctional 3'-phospho 96.9 0.00091 3.1E-08 62.2 5.3 38 263-300 4-44 (179)
171 3t61_A Gluconokinase; PSI-biol 96.8 0.00072 2.5E-08 64.2 4.4 31 264-294 18-48 (202)
172 2ze6_A Isopentenyl transferase 96.8 0.00066 2.3E-08 67.5 4.3 32 266-297 3-34 (253)
173 1e6c_A Shikimate kinase; phosp 96.8 0.0006 2E-08 62.6 3.6 36 265-302 3-38 (173)
174 3lw7_A Adenylate kinase relate 96.8 0.00054 1.8E-08 62.3 3.2 29 266-295 3-31 (179)
175 2c95_A Adenylate kinase 1; tra 96.8 0.0006 2.1E-08 63.8 3.6 37 264-302 9-45 (196)
176 1aky_A Adenylate kinase; ATP:A 96.8 0.00082 2.8E-08 64.7 4.5 38 263-302 3-40 (220)
177 2vli_A Antibiotic resistance p 96.8 0.00061 2.1E-08 63.2 3.4 30 264-293 5-34 (183)
178 1g5t_A COB(I)alamin adenosyltr 96.8 0.0051 1.7E-07 59.2 9.8 115 266-398 30-177 (196)
179 1vma_A Cell division protein F 96.8 0.0046 1.6E-07 63.5 10.1 95 239-333 79-196 (306)
180 1zd8_A GTP:AMP phosphotransfer 96.8 0.00066 2.3E-08 65.8 3.4 38 263-302 6-43 (227)
181 4gp7_A Metallophosphoesterase; 96.7 0.00056 1.9E-08 63.7 2.7 20 265-284 10-29 (171)
182 2bwj_A Adenylate kinase 5; pho 96.7 0.00069 2.3E-08 63.6 3.3 37 264-302 12-48 (199)
183 3cm0_A Adenylate kinase; ATP-b 96.7 0.00076 2.6E-08 62.8 3.6 35 265-301 5-39 (186)
184 3dl0_A Adenylate kinase; phosp 96.7 0.00076 2.6E-08 64.6 3.7 30 266-295 2-31 (216)
185 3be4_A Adenylate kinase; malar 96.7 0.00088 3E-08 64.6 4.1 37 264-302 5-41 (217)
186 3fb4_A Adenylate kinase; psych 96.7 0.00083 2.8E-08 64.3 3.7 30 266-295 2-31 (216)
187 3tlx_A Adenylate kinase 2; str 96.7 0.00085 2.9E-08 66.2 3.8 38 263-302 28-65 (243)
188 3umf_A Adenylate kinase; rossm 96.7 0.00097 3.3E-08 65.2 4.1 39 262-302 27-65 (217)
189 2pt5_A Shikimate kinase, SK; a 96.7 0.0009 3.1E-08 61.2 3.6 35 266-302 2-36 (168)
190 1ukz_A Uridylate kinase; trans 96.7 0.00091 3.1E-08 63.3 3.8 37 264-302 15-51 (203)
191 1kht_A Adenylate kinase; phosp 96.7 0.00097 3.3E-08 62.0 3.7 25 265-289 4-28 (192)
192 1ak2_A Adenylate kinase isoenz 96.7 0.0013 4.3E-08 64.2 4.6 37 264-302 16-52 (233)
193 1jjv_A Dephospho-COA kinase; P 96.6 0.0025 8.5E-08 60.5 6.1 51 265-318 3-53 (206)
194 1zak_A Adenylate kinase; ATP:A 96.6 0.001 3.5E-08 64.2 3.4 37 263-301 4-40 (222)
195 2eyu_A Twitching motility prot 96.6 0.001 3.5E-08 66.7 3.3 66 266-332 27-107 (261)
196 1nks_A Adenylate kinase; therm 96.6 0.0015 5E-08 60.7 4.2 36 266-301 3-41 (194)
197 2grj_A Dephospho-COA kinase; T 96.5 0.0028 9.5E-08 60.6 6.1 40 266-307 14-53 (192)
198 1knq_A Gluconate kinase; ALFA/ 96.5 0.0017 5.7E-08 60.0 4.4 34 265-300 9-42 (175)
199 4eun_A Thermoresistant glucoki 96.5 0.0016 5.4E-08 61.9 4.3 35 264-300 29-63 (200)
200 3uie_A Adenylyl-sulfate kinase 96.5 0.0024 8.1E-08 60.7 5.4 38 263-300 24-64 (200)
201 2ewv_A Twitching motility prot 96.5 0.0025 8.4E-08 67.2 6.0 72 262-333 134-219 (372)
202 3kl4_A SRP54, signal recogniti 96.5 0.023 7.9E-07 61.1 13.7 73 263-335 96-191 (433)
203 1q57_A DNA primase/helicase; d 96.5 0.007 2.4E-07 66.0 9.6 39 260-298 238-280 (503)
204 3crm_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 67.4 4.3 34 264-297 5-38 (323)
205 1w4r_A Thymidine kinase; type 96.5 0.0065 2.2E-07 58.4 8.0 69 265-335 21-103 (195)
206 2pbr_A DTMP kinase, thymidylat 96.4 0.0023 8E-08 59.5 4.8 31 266-296 2-35 (195)
207 1tf7_A KAIC; homohexamer, hexa 96.4 0.01 3.5E-07 65.2 10.5 74 262-335 279-383 (525)
208 3sr0_A Adenylate kinase; phosp 96.4 0.0019 6.5E-08 62.5 4.0 35 266-302 2-36 (206)
209 1vt4_I APAF-1 related killer D 96.4 0.013 4.4E-07 69.3 11.6 43 234-287 131-173 (1221)
210 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00062 2.1E-08 71.4 0.6 52 235-294 3-54 (359)
211 1ex7_A Guanylate kinase; subst 96.4 0.003 1E-07 60.2 5.3 24 265-288 2-25 (186)
212 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.002 7E-08 66.7 4.4 69 266-334 173-251 (330)
213 1e4v_A Adenylate kinase; trans 96.4 0.0022 7.4E-08 61.5 4.2 30 266-295 2-31 (214)
214 1cke_A CK, MSSA, protein (cyti 96.4 0.0023 7.8E-08 61.5 4.3 35 265-301 6-40 (227)
215 2v54_A DTMP kinase, thymidylat 96.3 0.0026 8.7E-08 60.0 4.5 33 264-296 4-37 (204)
216 2px0_A Flagellar biosynthesis 96.3 0.015 5.1E-07 59.3 10.2 60 238-299 80-144 (296)
217 2if2_A Dephospho-COA kinase; a 96.3 0.0049 1.7E-07 58.3 6.2 35 266-303 3-37 (204)
218 3bgw_A DNAB-like replicative h 96.3 0.0073 2.5E-07 65.1 8.3 39 260-298 193-234 (444)
219 2jaq_A Deoxyguanosine kinase; 96.3 0.0023 8E-08 60.0 3.8 29 266-294 2-30 (205)
220 1uj2_A Uridine-cytidine kinase 96.3 0.0035 1.2E-07 61.9 5.2 40 263-302 21-68 (252)
221 3ake_A Cytidylate kinase; CMP 96.3 0.0032 1.1E-07 59.4 4.6 34 266-301 4-37 (208)
222 2z0h_A DTMP kinase, thymidylat 96.2 0.0034 1.1E-07 58.7 4.7 30 267-296 3-35 (197)
223 1s96_A Guanylate kinase, GMP k 96.2 0.012 4.2E-07 57.2 8.7 26 264-289 16-41 (219)
224 2xb4_A Adenylate kinase; ATP-b 96.2 0.0028 9.4E-08 61.5 4.0 35 266-302 2-36 (223)
225 1uf9_A TT1252 protein; P-loop, 96.2 0.0034 1.2E-07 59.0 4.3 37 264-303 8-44 (203)
226 1tf7_A KAIC; homohexamer, hexa 96.2 0.021 7.3E-07 62.6 11.3 110 264-382 39-188 (525)
227 3b6e_A Interferon-induced heli 96.1 0.023 7.9E-07 53.4 9.8 22 266-287 50-71 (216)
228 2bbw_A Adenylate kinase 4, AK4 96.1 0.004 1.4E-07 61.0 4.5 31 264-294 27-57 (246)
229 2qor_A Guanylate kinase; phosp 96.1 0.0055 1.9E-07 58.3 5.3 28 262-289 10-37 (204)
230 2plr_A DTMP kinase, probable t 96.0 0.0052 1.8E-07 57.9 5.0 31 264-294 4-36 (213)
231 3r20_A Cytidylate kinase; stru 96.0 0.0043 1.5E-07 61.3 4.4 35 264-300 9-43 (233)
232 2yvu_A Probable adenylyl-sulfa 96.0 0.0069 2.3E-07 56.5 5.6 38 263-300 12-52 (186)
233 4a1f_A DNAB helicase, replicat 96.0 0.016 5.6E-07 60.2 8.9 38 260-297 42-82 (338)
234 2wwf_A Thymidilate kinase, put 96.0 0.0021 7E-08 61.0 1.9 29 263-291 9-37 (212)
235 3ney_A 55 kDa erythrocyte memb 96.0 0.0095 3.3E-07 57.3 6.4 26 263-288 18-43 (197)
236 3tau_A Guanylate kinase, GMP k 96.0 0.0065 2.2E-07 58.2 5.2 26 264-289 8-33 (208)
237 1w36_D RECD, exodeoxyribonucle 95.9 0.015 5E-07 65.2 8.7 22 266-287 166-187 (608)
238 3nwj_A ATSK2; P loop, shikimat 95.9 0.0039 1.3E-07 62.2 3.6 35 266-302 50-84 (250)
239 1m7g_A Adenylylsulfate kinase; 95.9 0.0059 2E-07 58.4 4.7 38 264-301 25-66 (211)
240 3a8t_A Adenylate isopentenyltr 95.9 0.0037 1.3E-07 65.0 3.5 34 264-297 40-73 (339)
241 1nn5_A Similar to deoxythymidy 95.9 0.0025 8.6E-08 60.4 1.9 26 264-289 9-34 (215)
242 1xx6_A Thymidine kinase; NESG, 95.9 0.02 6.8E-07 54.7 8.1 70 265-335 9-93 (191)
243 1kgd_A CASK, peripheral plasma 95.8 0.0086 3E-07 55.9 5.4 25 264-288 5-29 (180)
244 3c8u_A Fructokinase; YP_612366 95.8 0.014 4.7E-07 55.7 6.8 26 264-289 22-47 (208)
245 3gmt_A Adenylate kinase; ssgci 95.8 0.016 5.5E-07 57.0 7.2 35 266-302 10-44 (230)
246 3foz_A TRNA delta(2)-isopenten 95.8 0.0055 1.9E-07 63.1 4.0 35 263-297 9-43 (316)
247 1ltq_A Polynucleotide kinase; 95.8 0.0051 1.7E-07 61.9 3.7 37 264-302 2-39 (301)
248 2f6r_A COA synthase, bifunctio 95.7 0.01 3.5E-07 59.8 5.8 37 264-303 75-111 (281)
249 2h92_A Cytidylate kinase; ross 95.7 0.007 2.4E-07 57.8 4.3 36 264-301 3-38 (219)
250 2axn_A 6-phosphofructo-2-kinas 95.7 0.026 8.8E-07 62.1 9.3 41 264-304 35-78 (520)
251 2qt1_A Nicotinamide riboside k 95.7 0.0049 1.7E-07 58.6 3.1 34 265-300 22-56 (207)
252 1vht_A Dephospho-COA kinase; s 95.7 0.0067 2.3E-07 58.1 4.0 36 264-302 4-39 (218)
253 3llm_A ATP-dependent RNA helic 95.7 0.059 2E-06 52.3 10.8 21 265-285 77-97 (235)
254 1q3t_A Cytidylate kinase; nucl 95.6 0.0088 3E-07 58.3 4.6 37 263-301 15-51 (236)
255 2gxq_A Heat resistant RNA depe 95.6 0.048 1.6E-06 51.1 9.7 19 265-283 39-57 (207)
256 3zvl_A Bifunctional polynucleo 95.6 0.015 5.2E-07 62.0 6.8 36 263-300 257-292 (416)
257 4e22_A Cytidylate kinase; P-lo 95.5 0.0092 3.2E-07 59.0 4.4 28 266-293 29-56 (252)
258 1rz3_A Hypothetical protein rb 95.5 0.025 8.6E-07 53.6 7.2 37 264-300 22-61 (201)
259 2bdt_A BH3686; alpha-beta prot 95.5 0.012 4.2E-07 54.8 4.9 35 266-301 4-38 (189)
260 1x6v_B Bifunctional 3'-phospho 95.4 0.024 8.1E-07 63.7 7.9 37 264-300 52-91 (630)
261 2oap_1 GSPE-2, type II secreti 95.4 0.0059 2E-07 67.1 2.7 69 265-333 261-343 (511)
262 2j41_A Guanylate kinase; GMP, 95.3 0.01 3.5E-07 55.8 3.8 25 264-288 6-30 (207)
263 3d3q_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 62.0 3.8 32 265-296 8-39 (340)
264 3exa_A TRNA delta(2)-isopenten 95.2 0.01 3.4E-07 61.3 3.7 33 265-297 4-36 (322)
265 2qmh_A HPR kinase/phosphorylas 95.2 0.0092 3.1E-07 57.6 3.2 31 264-295 34-64 (205)
266 3fdi_A Uncharacterized protein 95.2 0.012 4.1E-07 56.4 4.0 28 266-293 8-35 (201)
267 1p9r_A General secretion pathw 95.2 0.042 1.4E-06 58.7 8.7 94 227-333 143-246 (418)
268 3thx_B DNA mismatch repair pro 95.1 0.064 2.2E-06 62.8 10.6 23 264-286 673-695 (918)
269 1hv8_A Putative ATP-dependent 95.1 0.069 2.3E-06 54.1 9.5 32 265-296 45-81 (367)
270 1lvg_A Guanylate kinase, GMP k 95.0 0.019 6.4E-07 54.6 4.7 25 264-288 4-28 (198)
271 3asz_A Uridine kinase; cytidin 95.0 0.013 4.3E-07 55.7 3.3 26 264-289 6-31 (211)
272 1vec_A ATP-dependent RNA helic 94.9 0.17 5.8E-06 47.3 11.0 18 265-282 41-58 (206)
273 1odf_A YGR205W, hypothetical 3 94.9 0.017 5.8E-07 58.7 4.1 40 262-301 29-74 (290)
274 2v3c_C SRP54, signal recogniti 94.8 0.035 1.2E-06 59.6 6.8 36 263-298 98-136 (432)
275 3tr0_A Guanylate kinase, GMP k 94.8 0.017 5.8E-07 54.2 3.8 24 265-288 8-31 (205)
276 2j37_W Signal recognition part 94.8 0.052 1.8E-06 59.4 8.0 36 262-297 99-137 (504)
277 1t6n_A Probable ATP-dependent 94.8 0.29 1E-05 46.3 12.5 58 228-287 14-74 (220)
278 2j9r_A Thymidine kinase; TK1, 94.8 0.056 1.9E-06 52.6 7.3 67 267-335 31-113 (214)
279 3a00_A Guanylate kinase, GMP k 94.7 0.017 5.8E-07 54.0 3.6 24 265-288 2-25 (186)
280 2lna_A AFG3-like protein 2; st 94.7 0.077 2.6E-06 45.3 7.1 63 92-156 14-77 (99)
281 3lxw_A GTPase IMAP family memb 94.7 0.24 8.1E-06 48.5 11.8 23 265-287 22-44 (247)
282 2xxa_A Signal recognition part 94.6 0.1 3.4E-06 56.0 9.7 73 262-334 98-194 (433)
283 1zu4_A FTSY; GTPase, signal re 94.6 0.062 2.1E-06 55.3 7.8 38 261-298 102-142 (320)
284 3eph_A TRNA isopentenyltransfe 94.6 0.017 5.7E-07 61.6 3.5 32 264-295 2-33 (409)
285 2pl3_A Probable ATP-dependent 94.5 0.097 3.3E-06 50.3 8.5 54 227-282 24-80 (236)
286 1c9k_A COBU, adenosylcobinamid 94.5 0.023 7.9E-07 53.8 3.8 32 267-299 2-33 (180)
287 3e70_C DPA, signal recognition 94.5 0.083 2.8E-06 54.6 8.3 27 262-288 127-153 (328)
288 4b3f_X DNA-binding protein smu 94.5 0.15 5.3E-06 57.2 11.2 33 266-298 207-242 (646)
289 2xau_A PRE-mRNA-splicing facto 94.5 0.051 1.7E-06 62.6 7.4 23 265-287 110-132 (773)
290 3thx_A DNA mismatch repair pro 94.4 0.11 3.7E-06 61.0 10.1 22 265-286 663-684 (934)
291 1ls1_A Signal recognition part 94.4 0.077 2.6E-06 53.9 7.8 73 263-335 97-192 (295)
292 1qde_A EIF4A, translation init 94.4 0.11 3.9E-06 49.2 8.6 53 227-281 13-68 (224)
293 3lnc_A Guanylate kinase, GMP k 94.4 0.023 7.8E-07 55.0 3.5 25 264-288 27-52 (231)
294 2yhs_A FTSY, cell division pro 94.4 0.1 3.5E-06 56.9 9.0 34 262-295 291-327 (503)
295 3p32_A Probable GTPase RV1496/ 94.3 0.21 7E-06 51.9 10.9 34 264-297 79-115 (355)
296 1m8p_A Sulfate adenylyltransfe 94.2 0.084 2.9E-06 58.7 8.2 39 264-302 396-438 (573)
297 3iuy_A Probable ATP-dependent 94.2 0.066 2.3E-06 51.2 6.5 57 224-282 15-75 (228)
298 2zj8_A DNA helicase, putative 94.2 0.11 3.9E-06 58.8 9.4 33 264-296 39-75 (720)
299 1j8m_F SRP54, signal recogniti 94.2 0.071 2.4E-06 54.2 6.9 72 264-335 98-192 (297)
300 1bif_A 6-phosphofructo-2-kinas 94.2 0.14 4.7E-06 55.3 9.6 39 264-302 39-80 (469)
301 1a7j_A Phosphoribulokinase; tr 94.1 0.022 7.5E-07 57.8 3.0 37 265-301 6-45 (290)
302 1s2m_A Putative ATP-dependent 94.1 0.17 5.9E-06 52.2 9.9 58 226-285 19-79 (400)
303 3bor_A Human initiation factor 94.1 0.083 2.8E-06 51.1 6.9 56 226-283 28-86 (237)
304 2fwr_A DNA repair protein RAD2 94.1 0.16 5.4E-06 54.2 9.8 36 266-301 110-146 (472)
305 4i1u_A Dephospho-COA kinase; s 94.1 0.062 2.1E-06 52.1 5.9 51 266-319 11-61 (210)
306 3hdt_A Putative kinase; struct 94.1 0.028 9.7E-07 54.9 3.5 29 266-294 16-44 (223)
307 2jeo_A Uridine-cytidine kinase 94.0 0.047 1.6E-06 53.4 5.1 26 266-291 27-52 (245)
308 3tui_C Methionine import ATP-b 94.0 0.088 3E-06 55.3 7.4 22 266-287 56-77 (366)
309 1z6g_A Guanylate kinase; struc 94.0 0.03 1E-06 54.0 3.6 24 265-288 24-47 (218)
310 3b9q_A Chloroplast SRP recepto 94.0 0.054 1.8E-06 55.3 5.7 28 261-288 97-124 (302)
311 3fe2_A Probable ATP-dependent 93.9 0.13 4.4E-06 49.9 8.0 18 265-282 67-84 (242)
312 2ffh_A Protein (FFH); SRP54, s 93.9 0.21 7.3E-06 53.4 10.3 72 263-334 97-191 (425)
313 2p6r_A Afuhel308 helicase; pro 93.9 0.11 3.8E-06 58.7 8.6 33 265-297 41-76 (702)
314 2oxc_A Probable ATP-dependent 93.8 0.15 5.1E-06 49.0 8.2 54 226-281 22-78 (230)
315 3e2i_A Thymidine kinase; Zn-bi 93.8 0.067 2.3E-06 52.1 5.6 69 266-335 30-113 (219)
316 1wb9_A DNA mismatch repair pro 93.8 0.27 9.3E-06 56.7 11.6 23 265-287 608-630 (800)
317 1htw_A HI0065; nucleotide-bind 93.8 0.045 1.6E-06 50.4 4.2 23 266-288 35-57 (158)
318 2orv_A Thymidine kinase; TP4A 93.8 0.18 6E-06 49.7 8.5 68 265-335 20-102 (234)
319 1znw_A Guanylate kinase, GMP k 93.8 0.038 1.3E-06 52.5 3.7 24 266-289 22-45 (207)
320 4eaq_A DTMP kinase, thymidylat 93.7 0.06 2E-06 52.5 5.1 32 264-295 26-59 (229)
321 1gtv_A TMK, thymidylate kinase 93.7 0.018 6E-07 54.5 1.2 24 266-289 2-25 (214)
322 2j0s_A ATP-dependent RNA helic 93.6 0.32 1.1E-05 50.4 10.9 57 227-285 36-95 (410)
323 2va8_A SSO2462, SKI2-type heli 93.6 0.16 5.5E-06 57.4 9.3 33 264-296 46-82 (715)
324 3tqc_A Pantothenate kinase; bi 93.6 0.14 4.7E-06 52.8 7.8 39 262-300 90-133 (321)
325 1wp9_A ATP-dependent RNA helic 93.5 0.21 7.2E-06 52.1 9.4 33 266-298 25-61 (494)
326 1gm5_A RECG; helicase, replica 93.5 0.37 1.3E-05 55.5 12.0 51 238-297 372-425 (780)
327 3h1t_A Type I site-specific re 93.5 0.13 4.3E-06 56.9 7.9 44 234-287 178-221 (590)
328 2v9p_A Replication protein E1; 93.5 0.047 1.6E-06 55.9 4.1 32 261-292 123-154 (305)
329 3tqf_A HPR(Ser) kinase; transf 93.5 0.048 1.6E-06 51.5 3.8 28 264-292 16-43 (181)
330 2gza_A Type IV secretion syste 93.5 0.073 2.5E-06 55.6 5.6 70 265-334 176-263 (361)
331 2og2_A Putative signal recogni 93.4 0.074 2.5E-06 55.7 5.5 28 261-288 154-181 (359)
332 3vkw_A Replicase large subunit 93.4 0.18 6E-06 54.3 8.4 23 265-287 162-184 (446)
333 1sky_E F1-ATPase, F1-ATP synth 93.2 0.072 2.5E-06 57.7 5.1 23 266-288 153-175 (473)
334 1xti_A Probable ATP-dependent 93.2 0.28 9.5E-06 50.3 9.4 22 265-286 46-67 (391)
335 2ged_A SR-beta, signal recogni 93.0 0.09 3.1E-06 48.4 5.0 25 264-288 48-72 (193)
336 3cr8_A Sulfate adenylyltranfer 93.0 0.13 4.6E-06 56.8 7.1 39 264-302 369-411 (552)
337 4f4c_A Multidrug resistance pr 92.9 0.082 2.8E-06 64.4 5.7 24 265-288 445-468 (1321)
338 3sqw_A ATP-dependent RNA helic 92.9 0.14 4.8E-06 56.5 7.1 57 225-281 14-77 (579)
339 1sq5_A Pantothenate kinase; P- 92.9 0.1 3.6E-06 53.0 5.6 26 264-289 80-105 (308)
340 4a82_A Cystic fibrosis transme 92.8 0.24 8.4E-06 54.8 8.9 24 265-288 368-391 (578)
341 4a2p_A RIG-I, retinoic acid in 92.8 0.69 2.4E-05 49.7 12.3 32 266-297 24-63 (556)
342 3i5x_A ATP-dependent RNA helic 92.8 0.23 8E-06 54.1 8.6 18 264-281 111-128 (563)
343 1p5z_B DCK, deoxycytidine kina 92.8 0.033 1.1E-06 55.1 1.6 30 264-293 24-54 (263)
344 2ocp_A DGK, deoxyguanosine kin 92.7 0.068 2.3E-06 51.9 3.8 26 264-289 2-27 (241)
345 3t1o_A Gliding protein MGLA; G 92.7 0.26 8.9E-06 45.0 7.5 23 266-288 16-38 (198)
346 3tbk_A RIG-I helicase domain; 92.6 0.91 3.1E-05 48.6 13.0 34 265-298 20-61 (555)
347 2i3b_A HCR-ntpase, human cance 92.6 0.062 2.1E-06 51.0 3.3 23 266-288 3-25 (189)
348 1q0u_A Bstdead; DEAD protein, 92.6 0.15 5E-06 48.5 5.9 19 265-283 42-60 (219)
349 3qf4_B Uncharacterized ABC tra 92.6 0.32 1.1E-05 54.1 9.5 24 265-288 382-405 (598)
350 2gks_A Bifunctional SAT/APS ki 92.6 0.26 8.8E-06 54.4 8.6 39 264-302 372-413 (546)
351 3lxx_A GTPase IMAP family memb 92.5 0.22 7.4E-06 48.1 7.1 22 266-287 31-52 (239)
352 1ewq_A DNA mismatch repair pro 92.5 0.3 1E-05 56.1 9.3 24 264-287 576-599 (765)
353 3pey_A ATP-dependent RNA helic 92.5 0.38 1.3E-05 49.0 9.3 22 264-285 44-65 (395)
354 2v6i_A RNA helicase; membrane, 92.4 0.36 1.2E-05 51.3 9.3 32 265-296 3-38 (431)
355 1np6_A Molybdopterin-guanine d 92.4 0.083 2.8E-06 49.5 3.7 25 264-288 6-30 (174)
356 3qf4_A ABC transporter, ATP-bi 92.3 0.19 6.4E-06 55.9 7.2 24 265-288 370-393 (587)
357 3q72_A GTP-binding protein RAD 92.2 0.086 3E-06 47.0 3.6 21 266-286 4-24 (166)
358 3aez_A Pantothenate kinase; tr 92.2 0.082 2.8E-06 54.2 3.8 26 263-288 89-114 (312)
359 3eiq_A Eukaryotic initiation f 92.2 0.4 1.4E-05 49.5 9.2 55 228-284 40-97 (414)
360 1g8f_A Sulfate adenylyltransfe 92.1 0.092 3.1E-06 57.6 4.2 27 264-290 395-421 (511)
361 2qm8_A GTPase/ATPase; G protei 92.1 0.41 1.4E-05 49.4 9.0 23 266-288 57-79 (337)
362 2o8b_B DNA mismatch repair pro 92.0 0.44 1.5E-05 56.5 10.1 21 265-285 790-810 (1022)
363 3def_A T7I23.11 protein; chlor 92.0 0.43 1.5E-05 46.9 8.6 24 265-288 37-60 (262)
364 1rj9_A FTSY, signal recognitio 91.7 0.11 3.8E-06 53.0 4.1 26 263-288 101-126 (304)
365 4edh_A DTMP kinase, thymidylat 91.7 0.16 5.6E-06 48.9 5.1 32 265-296 7-41 (213)
366 1fuu_A Yeast initiation factor 91.7 0.47 1.6E-05 48.5 8.9 55 226-282 19-76 (394)
367 2wsm_A Hydrogenase expression/ 91.7 0.16 5.5E-06 48.0 4.9 24 265-288 31-54 (221)
368 3b85_A Phosphate starvation-in 91.6 0.071 2.4E-06 51.3 2.4 22 266-287 24-45 (208)
369 3l9o_A ATP-dependent RNA helic 91.6 0.73 2.5E-05 55.1 11.5 33 265-297 200-235 (1108)
370 2onk_A Molybdate/tungstate ABC 91.6 0.085 2.9E-06 51.9 2.9 24 265-288 25-48 (240)
371 3ly5_A ATP-dependent RNA helic 91.6 0.23 7.9E-06 48.9 6.1 19 265-283 92-110 (262)
372 1wrb_A DJVLGB; RNA helicase, D 91.5 0.2 6.8E-06 48.7 5.5 18 265-282 61-78 (253)
373 2p67_A LAO/AO transport system 91.5 0.4 1.4E-05 49.4 8.1 25 264-288 56-80 (341)
374 3tif_A Uncharacterized ABC tra 91.5 0.07 2.4E-06 52.3 2.2 23 266-288 33-55 (235)
375 2pcj_A ABC transporter, lipopr 91.5 0.07 2.4E-06 51.9 2.2 23 266-288 32-54 (224)
376 2cbz_A Multidrug resistance-as 91.5 0.071 2.4E-06 52.3 2.2 24 265-288 32-55 (237)
377 1xjc_A MOBB protein homolog; s 91.5 0.12 4.1E-06 48.3 3.6 32 265-296 5-39 (169)
378 3j16_B RLI1P; ribosome recycli 91.4 0.42 1.4E-05 53.4 8.7 109 261-383 100-285 (608)
379 3kta_A Chromosome segregation 91.4 0.12 4E-06 47.6 3.6 24 266-289 28-51 (182)
380 2f9l_A RAB11B, member RAS onco 91.2 0.11 3.9E-06 48.4 3.2 22 266-287 7-28 (199)
381 3dz8_A RAS-related protein RAB 91.2 0.65 2.2E-05 42.6 8.5 23 266-288 25-47 (191)
382 3v9p_A DTMP kinase, thymidylat 91.1 0.15 5E-06 49.9 4.0 32 265-296 26-64 (227)
383 1oix_A RAS-related protein RAB 91.1 0.11 3.8E-06 48.3 3.0 23 266-288 31-53 (191)
384 4f4c_A Multidrug resistance pr 90.9 0.23 7.9E-06 60.5 6.3 23 266-288 1107-1129(1321)
385 1sgw_A Putative ABC transporte 90.8 0.095 3.2E-06 50.7 2.4 23 266-288 37-59 (214)
386 1b0u_A Histidine permease; ABC 90.8 0.088 3E-06 52.5 2.2 24 266-289 34-57 (262)
387 2i4i_A ATP-dependent RNA helic 90.8 0.59 2E-05 48.3 8.7 53 227-281 14-69 (417)
388 2d2e_A SUFC protein; ABC-ATPas 90.8 0.11 3.9E-06 51.2 2.9 22 266-287 31-52 (250)
389 1z2a_A RAS-related protein RAB 90.8 0.13 4.4E-06 45.7 3.1 22 266-287 7-28 (168)
390 1mv5_A LMRA, multidrug resista 90.8 0.086 2.9E-06 51.8 2.1 23 266-288 30-52 (243)
391 3ber_A Probable ATP-dependent 90.8 0.49 1.7E-05 46.1 7.6 18 265-282 81-98 (249)
392 1lw7_A Transcriptional regulat 90.8 0.12 4.2E-06 53.7 3.3 28 264-291 170-197 (365)
393 1g6h_A High-affinity branched- 90.7 0.097 3.3E-06 51.9 2.4 23 266-288 35-57 (257)
394 2f7s_A C25KG, RAS-related prot 90.7 0.89 3E-05 42.5 9.1 22 266-287 27-48 (217)
395 2dyk_A GTP-binding protein; GT 90.7 0.14 4.9E-06 45.2 3.2 22 266-287 3-24 (161)
396 1ji0_A ABC transporter; ATP bi 90.6 0.1 3.5E-06 51.2 2.4 23 266-288 34-56 (240)
397 1nrj_B SR-beta, signal recogni 90.5 0.17 5.8E-06 47.6 3.8 24 265-288 13-36 (218)
398 3gfo_A Cobalt import ATP-bindi 90.5 0.1 3.5E-06 52.5 2.4 23 266-288 36-58 (275)
399 2ghi_A Transport protein; mult 90.5 0.099 3.4E-06 52.0 2.2 24 265-288 47-70 (260)
400 2ff7_A Alpha-hemolysin translo 90.5 0.11 3.6E-06 51.4 2.4 23 266-288 37-59 (247)
401 3fvq_A Fe(3+) IONS import ATP- 90.5 0.11 3.9E-06 54.3 2.7 23 266-288 32-54 (359)
402 2zu0_C Probable ATP-dependent 90.4 0.12 4E-06 51.7 2.7 22 266-287 48-69 (267)
403 3tmk_A Thymidylate kinase; pho 90.4 0.26 8.9E-06 47.8 5.1 30 264-293 5-34 (216)
404 2pze_A Cystic fibrosis transme 90.3 0.095 3.3E-06 51.1 1.9 24 265-288 35-58 (229)
405 2db3_A ATP-dependent RNA helic 90.3 0.95 3.2E-05 47.9 9.9 54 226-281 54-110 (434)
406 2ixe_A Antigen peptide transpo 90.3 0.1 3.6E-06 52.2 2.2 23 266-288 47-69 (271)
407 2olj_A Amino acid ABC transpor 90.3 0.1 3.6E-06 52.1 2.2 23 266-288 52-74 (263)
408 3sop_A Neuronal-specific septi 90.3 0.14 4.8E-06 51.3 3.1 23 266-288 4-26 (270)
409 4g1u_C Hemin import ATP-bindin 90.3 0.11 3.7E-06 52.0 2.2 23 266-288 39-61 (266)
410 3lv8_A DTMP kinase, thymidylat 90.2 0.17 5.7E-06 49.8 3.5 28 264-291 27-57 (236)
411 2qi9_C Vitamin B12 import ATP- 90.2 0.12 4E-06 51.3 2.4 24 266-289 28-51 (249)
412 2f1r_A Molybdopterin-guanine d 90.1 0.1 3.5E-06 48.7 1.8 24 265-288 3-26 (171)
413 1kao_A RAP2A; GTP-binding prot 90.1 0.17 5.8E-06 44.7 3.2 22 266-287 5-26 (167)
414 2wji_A Ferrous iron transport 90.1 0.14 4.9E-06 46.1 2.7 22 266-287 5-26 (165)
415 1z47_A CYSA, putative ABC-tran 90.0 0.14 4.7E-06 53.6 2.9 23 266-288 43-65 (355)
416 2ce2_X GTPase HRAS; signaling 90.0 0.16 5.6E-06 44.6 3.0 23 266-288 5-27 (166)
417 2ihy_A ABC transporter, ATP-bi 89.9 0.12 4.2E-06 52.0 2.4 23 266-288 49-71 (279)
418 2gk6_A Regulator of nonsense t 89.9 0.15 5E-06 57.2 3.3 32 266-297 197-232 (624)
419 2zej_A Dardarin, leucine-rich 89.9 0.12 4.1E-06 47.5 2.2 21 266-286 4-24 (184)
420 3rlf_A Maltose/maltodextrin im 89.9 0.14 4.8E-06 54.0 2.9 23 266-288 31-53 (381)
421 2yz2_A Putative ABC transporte 89.9 0.12 4E-06 51.6 2.2 23 266-288 35-57 (266)
422 2yyz_A Sugar ABC transporter, 89.9 0.14 4.9E-06 53.5 2.9 22 266-287 31-52 (359)
423 2it1_A 362AA long hypothetical 89.9 0.14 4.9E-06 53.6 2.9 23 266-288 31-53 (362)
424 1vpl_A ABC transporter, ATP-bi 89.9 0.12 4.1E-06 51.4 2.2 23 266-288 43-65 (256)
425 1fzq_A ADP-ribosylation factor 89.8 0.55 1.9E-05 42.9 6.6 24 264-287 16-39 (181)
426 2qu8_A Putative nucleolar GTP- 89.8 1 3.6E-05 42.7 8.8 22 266-287 31-52 (228)
427 3oiy_A Reverse gyrase helicase 89.8 0.13 4.6E-06 53.7 2.6 20 265-284 37-56 (414)
428 1u8z_A RAS-related protein RAL 89.8 0.19 6.4E-06 44.4 3.2 23 265-287 5-27 (168)
429 2hf9_A Probable hydrogenase ni 89.7 0.38 1.3E-05 45.5 5.6 24 265-288 39-62 (226)
430 1ek0_A Protein (GTP-binding pr 89.7 0.19 6.5E-06 44.6 3.2 22 266-287 5-26 (170)
431 1zd9_A ADP-ribosylation factor 89.7 0.62 2.1E-05 42.7 6.9 22 266-287 24-45 (188)
432 2nq2_C Hypothetical ABC transp 89.7 0.13 4.4E-06 51.0 2.3 23 266-288 33-55 (253)
433 1v43_A Sugar-binding transport 89.7 0.15 5.1E-06 53.6 2.9 22 266-287 39-60 (372)
434 2nzj_A GTP-binding protein REM 89.6 0.16 5.5E-06 45.5 2.7 22 266-287 6-27 (175)
435 1g29_1 MALK, maltose transport 89.6 0.15 5.3E-06 53.5 2.9 23 266-288 31-53 (372)
436 1z0j_A RAB-22, RAS-related pro 89.6 0.2 6.7E-06 44.6 3.2 23 266-288 8-30 (170)
437 2xtp_A GTPase IMAP family memb 89.5 1.4 4.6E-05 42.9 9.6 23 265-287 23-45 (260)
438 4a2q_A RIG-I, retinoic acid in 89.4 2 6.9E-05 49.2 12.3 33 265-297 264-304 (797)
439 1z08_A RAS-related protein RAB 89.4 0.2 7E-06 44.6 3.2 22 266-287 8-29 (170)
440 2xgj_A ATP-dependent RNA helic 89.4 1.1 3.7E-05 53.1 10.2 32 266-297 103-137 (1010)
441 2pjz_A Hypothetical protein ST 89.4 0.14 4.9E-06 51.0 2.4 23 266-288 32-54 (263)
442 1wms_A RAB-9, RAB9, RAS-relate 89.4 0.2 7E-06 45.0 3.2 22 266-287 9-30 (177)
443 2wjg_A FEOB, ferrous iron tran 89.3 0.18 6.3E-06 45.9 2.9 22 266-287 9-30 (188)
444 1g16_A RAS-related protein SEC 89.3 0.2 6.7E-06 44.6 3.0 22 266-287 5-26 (170)
445 2hup_A RAS-related protein RAB 89.3 0.72 2.5E-05 43.0 7.1 22 266-287 31-52 (201)
446 3d31_A Sulfate/molybdate ABC t 89.2 0.13 4.4E-06 53.6 2.0 23 266-288 28-50 (348)
447 2erx_A GTP-binding protein DI- 89.2 0.19 6.6E-06 44.6 2.9 22 266-287 5-26 (172)
448 3ch4_B Pmkase, phosphomevalona 89.2 0.38 1.3E-05 46.2 5.1 42 260-301 7-49 (202)
449 1ky3_A GTP-binding protein YPT 89.2 0.21 7.3E-06 44.9 3.2 23 265-287 9-31 (182)
450 2www_A Methylmalonic aciduria 89.2 0.6 2.1E-05 48.3 7.0 22 266-287 76-97 (349)
451 1r2q_A RAS-related protein RAB 89.2 0.22 7.5E-06 44.2 3.2 22 266-287 8-29 (170)
452 2lkc_A Translation initiation 89.2 0.24 8.3E-06 44.5 3.6 24 264-287 8-31 (178)
453 1upt_A ARL1, ADP-ribosylation 89.1 0.28 9.5E-06 43.7 3.9 23 265-287 8-30 (171)
454 1svi_A GTP-binding protein YSX 89.1 0.16 5.5E-06 46.6 2.3 24 264-287 23-46 (195)
455 2hxs_A RAB-26, RAS-related pro 89.1 0.22 7.5E-06 44.8 3.2 22 266-287 8-29 (178)
456 2oca_A DAR protein, ATP-depend 89.0 1.5 5.2E-05 47.0 10.4 32 266-297 130-165 (510)
457 1c1y_A RAS-related protein RAP 89.0 0.23 7.8E-06 44.0 3.2 22 266-287 5-26 (167)
458 3bc1_A RAS-related protein RAB 89.0 0.22 7.7E-06 45.2 3.2 23 265-287 12-34 (195)
459 2vp4_A Deoxynucleoside kinase; 89.0 0.25 8.6E-06 47.7 3.7 29 265-294 21-49 (230)
460 3g5u_A MCG1178, multidrug resi 88.9 0.62 2.1E-05 56.6 7.9 24 265-288 417-440 (1284)
461 3q85_A GTP-binding protein REM 88.9 0.22 7.6E-06 44.3 3.1 21 266-286 4-24 (169)
462 3ux8_A Excinuclease ABC, A sub 88.9 0.53 1.8E-05 53.1 6.8 19 266-284 350-368 (670)
463 1r8s_A ADP-ribosylation factor 88.9 0.24 8.2E-06 43.9 3.2 22 266-287 2-23 (164)
464 2ykg_A Probable ATP-dependent 88.9 1.6 5.4E-05 48.8 10.7 22 265-286 29-50 (696)
465 3t34_A Dynamin-related protein 88.8 0.67 2.3E-05 47.9 7.1 26 261-287 32-57 (360)
466 3ld9_A DTMP kinase, thymidylat 88.7 0.27 9.2E-06 47.9 3.7 31 264-294 21-55 (223)
467 2atv_A RERG, RAS-like estrogen 88.7 0.26 9.1E-06 45.5 3.6 23 265-287 29-51 (196)
468 1oxx_K GLCV, glucose, ABC tran 88.7 0.13 4.4E-06 53.7 1.5 23 266-288 33-55 (353)
469 1ko7_A HPR kinase/phosphatase; 88.6 0.27 9.3E-06 50.5 3.8 28 265-293 145-172 (314)
470 2y8e_A RAB-protein 6, GH09086P 88.6 0.23 8E-06 44.5 3.0 22 266-287 16-37 (179)
471 1z0f_A RAB14, member RAS oncog 88.5 0.26 8.8E-06 44.2 3.2 23 266-288 17-39 (179)
472 4ag6_A VIRB4 ATPase, type IV s 88.5 0.42 1.5E-05 49.9 5.4 33 265-297 36-71 (392)
473 4a2w_A RIG-I, retinoic acid in 88.5 3 0.0001 48.8 13.1 33 265-297 264-304 (936)
474 2eyq_A TRCF, transcription-rep 88.4 2.8 9.5E-05 50.3 12.9 53 236-297 605-660 (1151)
475 4dcu_A GTP-binding protein ENG 88.4 0.77 2.6E-05 49.1 7.4 21 266-286 25-45 (456)
476 4dsu_A GTPase KRAS, isoform 2B 88.4 0.26 8.9E-06 44.7 3.2 23 266-288 6-28 (189)
477 1knx_A Probable HPR(Ser) kinas 88.3 0.26 9E-06 50.5 3.5 28 265-293 148-175 (312)
478 3con_A GTPase NRAS; structural 88.3 0.26 9E-06 45.0 3.2 23 266-288 23-45 (190)
479 3fmp_B ATP-dependent RNA helic 88.3 1.2 4.2E-05 47.3 9.0 18 264-281 131-148 (479)
480 1yrb_A ATP(GTP)binding protein 88.3 0.47 1.6E-05 46.0 5.2 34 264-297 14-49 (262)
481 3gd7_A Fusion complex of cysti 88.3 0.19 6.5E-06 53.2 2.5 22 266-287 49-70 (390)
482 2p5s_A RAS and EF-hand domain 88.3 0.29 9.8E-06 45.5 3.5 24 264-287 28-51 (199)
483 3clv_A RAB5 protein, putative; 88.3 0.31 1.1E-05 44.5 3.7 23 265-287 8-30 (208)
484 2a9k_A RAS-related protein RAL 88.3 0.27 9.3E-06 44.4 3.2 22 266-287 20-41 (187)
485 2fn4_A P23, RAS-related protei 88.2 0.25 8.7E-06 44.3 3.0 22 266-287 11-32 (181)
486 1m7b_A RND3/RHOE small GTP-bin 88.2 0.26 8.7E-06 45.1 3.0 23 265-287 8-30 (184)
487 2efe_B Small GTP-binding prote 88.1 0.28 9.5E-06 44.2 3.2 22 266-287 14-35 (181)
488 2oil_A CATX-8, RAS-related pro 88.1 0.28 9.4E-06 45.1 3.2 22 266-287 27-48 (193)
489 3tw8_B RAS-related protein RAB 88.1 0.25 8.6E-06 44.4 2.9 21 266-286 11-31 (181)
490 2gj8_A MNME, tRNA modification 88.1 0.25 8.7E-06 45.0 2.9 22 266-287 6-27 (172)
491 2bbs_A Cystic fibrosis transme 88.0 0.18 6.1E-06 51.1 2.0 23 266-288 66-88 (290)
492 3fho_A ATP-dependent RNA helic 88.0 1.8 6.2E-05 46.8 10.2 19 265-283 159-177 (508)
493 2bme_A RAB4A, RAS-related prot 87.9 0.27 9.2E-06 44.6 3.0 22 266-287 12-33 (186)
494 1tq4_A IIGP1, interferon-induc 87.9 0.31 1.1E-05 51.9 3.9 22 266-287 71-92 (413)
495 2b6h_A ADP-ribosylation factor 87.8 0.36 1.2E-05 44.7 3.8 23 264-286 29-51 (192)
496 1pui_A ENGB, probable GTP-bind 87.7 0.14 4.7E-06 47.9 0.8 23 265-287 27-49 (210)
497 2g6b_A RAS-related protein RAB 87.7 0.31 1.1E-05 43.9 3.2 23 265-287 11-33 (180)
498 2cxx_A Probable GTP-binding pr 87.6 0.24 8.2E-06 45.1 2.4 22 266-287 3-24 (190)
499 3kkq_A RAS-related protein M-R 87.6 0.31 1.1E-05 44.1 3.2 22 266-287 20-41 (183)
500 2wjy_A Regulator of nonsense t 87.6 0.26 8.9E-06 56.9 3.3 31 266-296 373-407 (800)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.7e-71 Score=603.73 Aligned_cols=361 Identities=58% Similarity=1.019 Sum_probs=314.7
Q ss_pred ccccc-CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech
Q 007989 220 FQMEP-NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (582)
Q Consensus 220 ~~~~~-~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s 298 (582)
+..+. .+.++|+||+|++++|+++++++.++++|..|..+|.++|+|+||+||||||||++|+++|+++++||+.++|+
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~ 83 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS 83 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHH
Confidence 33444 56789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++.+.++|.+..+++.+|+.|+..+||||||||+|.++.+++.+.++++++..+++++|+.+||++..+.+++||++||+
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999988776667788889999999999999887789999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~ 458 (582)
++.+|++++||||||+.+.+++|+.++|.+|++.++++.++.+++++..++..|+||+++||+++|++|++.|.+++...
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~ 243 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCccCcc-ccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCC-CcceEEEeccCCCCCcCC
Q 007989 459 ISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLIS 536 (582)
Q Consensus 459 It~~dl~~A~~~v~~g~~~~~-~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg-~a~g~~~~~p~~~~~~~t 536 (582)
|+.+||++|++++.++.++++ ..++++++.++|||+|||++++++++.+++++++|+||| .++||++++|.+|.+++|
T Consensus 244 I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~ 323 (476)
T 2ce7_A 244 ITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVS 323 (476)
T ss_dssp BCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCB
T ss_pred ecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccC
Confidence 999999999999998877765 446678899999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 537 KQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 537 ~~~l~~~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
|.+|+++|+++|||||||+++|| ++||||+|||++||+||+.||
T Consensus 324 ~~~l~~~i~~~l~Gr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv 367 (476)
T 2ce7_A 324 RNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMV 367 (476)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHS--SCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhhhcC--CCCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 599999999999999999997
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-69 Score=594.96 Aligned_cols=370 Identities=57% Similarity=0.951 Sum_probs=341.6
Q ss_pred CCcccccccccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
++.|+||+|++++..+. ++++|+||+|++++|+++++++.+++++..|..+|.++|+|+||+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988777 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 288 ~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
++.||++++++++.+.+++...++++.+|+.++...|||+||||||.++.+++.+.++++++..+++++++.+|+++..+
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999888899999999999988877655556788889999999999999888
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
..++++++||+|+.||++++||||||+.+.+++||.++|.+||+.|+++.++.+++++..+|..|+||+++||+++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHHHcCccCcc-ccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEe
Q 007989 448 AILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWF 526 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~-~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~ 526 (582)
++.|.++++..|+.+|+++|++++.++.+++. ..++++++.++|||+||+++++++++.+++++++|+||++++||++
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~- 326 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM- 326 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH-
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc-
Confidence 99999988889999999999999999877654 4567788999999999999999999999999999999999999998
Q ss_pred ccC-CCCCcCCHHHHHHHHHHhhhhHHHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 527 IPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 527 ~p~-~~~~~~t~~~l~~~i~~~lgGraAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
|. ++.+++||.+++++|+++|||||||+++|| ++||||+|||++||+||+.||
T Consensus 327 -p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv 380 (499)
T 2dhr_A 327 -PRREDMLHWSRKRLLDQIAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMI 380 (499)
T ss_dssp -HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSC--SCCBCCCHHHHHHHHHHHHHH
T ss_pred -cchhhhhccCHHHHHHHHHHHhhhHhHHHhhhc--ccCcccHHHHHHHHHHHHHHH
Confidence 76 789999999999999999999999999999 599999999999999999997
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-55 Score=466.06 Aligned_cols=259 Identities=39% Similarity=0.712 Sum_probs=247.9
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.+..++.|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4456677899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
+++.++|+|++++.++.+|+.|+..+||||||||||+++++|..+.++++.+...++++||.+||++....+|+||+|||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 99999999999999999999999999999999999999999987766677788899999999999999999999999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~ 457 (582)
+|+.|||||+||||||+.|+|++||.++|.+||+.|+++.++..++|++.+|..|+||||+||+++|++|++.|.++++.
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~ 375 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI 375 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcCccC
Q 007989 458 AISSKEIDDSIDRIVAGMEG 477 (582)
Q Consensus 458 ~It~~dl~~A~~~v~~g~~~ 477 (582)
.|+++||+.|+++++....+
T Consensus 376 ~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 376 HVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp BCCHHHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHhCcccc
Confidence 99999999999999876443
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-54 Score=457.63 Aligned_cols=260 Identities=37% Similarity=0.685 Sum_probs=248.6
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
..+..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 34556788999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 297 ~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
++++.++|+|++++.++.+|+.|+..+||||||||+|+++.+|..+..+++.+...++++||.+||++..+.+|+||+||
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred HHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999998776677778889999999999999999999999999
Q ss_pred CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 377 N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
|+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|++.+|..|+||||+||+++|++|++.|.++++
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHcCccC
Q 007989 457 AAISSKEIDDSIDRIVAGMEG 477 (582)
Q Consensus 457 ~~It~~dl~~A~~~v~~g~~~ 477 (582)
..|+.+||++|++++.++..+
T Consensus 409 ~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 409 MQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp SCBCHHHHHHHHHHHHHHHCC
T ss_pred CccCHHHHHHHHHHHhCCCCh
Confidence 999999999999999876443
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-53 Score=457.50 Aligned_cols=261 Identities=39% Similarity=0.713 Sum_probs=249.1
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
..+.++..|+++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.++
T Consensus 196 ~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 196 TMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred ceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 34556778899999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 297 ~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|+....+.......+++++|.+||++....+|+||+||
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred hHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999998766666777888999999999999999999999999
Q ss_pred CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 377 N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
|+|+.||+||+||||||++|+|++||.++|.+||+.|+++.++..++|++.||..|+||||+||+++|++|++.|.++++
T Consensus 356 Nrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 356 NRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp SCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHcCccCc
Q 007989 457 AAISSKEIDDSIDRIVAGMEGT 478 (582)
Q Consensus 457 ~~It~~dl~~A~~~v~~g~~~~ 478 (582)
..|+.+||.+|+++++.+.++.
T Consensus 436 ~~it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 436 KVATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp SSBCHHHHHHHHHHHHHHHCC-
T ss_pred CccCHHHHHHHHHHHhcCcccc
Confidence 9999999999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-52 Score=450.84 Aligned_cols=256 Identities=40% Similarity=0.680 Sum_probs=245.2
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.+..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3455678899999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
+++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|..+....+.+...++++||.+||++....+++||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999977666667788899999999999999999999999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~ 457 (582)
+|+.|||||+||||||+.|+|++||.++|.+||+.|+++.++..++|++.+|..|+||||+||+++|++|++.|.++++.
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~ 408 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcC
Q 007989 458 AISSKEIDDSIDRIVAG 474 (582)
Q Consensus 458 ~It~~dl~~A~~~v~~g 474 (582)
.|+.+||.+|++++...
T Consensus 409 ~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 409 HINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SBCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-52 Score=453.33 Aligned_cols=256 Identities=37% Similarity=0.694 Sum_probs=244.3
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.+..++.++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 3456678899999999999999999997766 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
+++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|..+..++..+...++++||.+||++....+|+||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999987666677788899999999999999999999999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~ 457 (582)
+|+.|||||+||||||++|+|++||.++|.+||+.|+++.++..++|++.+|..|+||||+||+++|++|++.|.++++.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~ 408 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS 408 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHcC
Q 007989 458 AISSKEIDDSIDRIVAG 474 (582)
Q Consensus 458 ~It~~dl~~A~~~v~~g 474 (582)
.|+.+||.+|++++.+.
T Consensus 409 ~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 409 SVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SBCHHHHHHHHHSCSSS
T ss_pred CcCHHHHHHHHHHHhCC
Confidence 99999999999987654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-51 Score=442.83 Aligned_cols=256 Identities=40% Similarity=0.668 Sum_probs=244.1
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.+..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3456678899999999999999999998886 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
+++.++|+|.+++.++++|..|+..+||||||||+|+++.+|.....+++.+..+++++||.+||++....+++||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999987766777788899999999999999999999999999
Q ss_pred ccccccccccCCCCccceeecc-CCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 378 RADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~-~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
+|+.|||||+||||||+.|+|+ +|+.++|.+||+.|+++.++.+++|++.+|..|+||||+||+++|++|++.|.++++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHcC
Q 007989 457 AAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 457 ~~It~~dl~~A~~~v~~g 474 (582)
..|+++||++|+.+++..
T Consensus 400 ~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVKT 417 (428)
T ss_dssp SSBCHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHhhCc
Confidence 999999999999887643
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.9e-46 Score=427.10 Aligned_cols=231 Identities=42% Similarity=0.783 Sum_probs=187.6
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..++++|+||+|++++|++|.+.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|.+++.||+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999988 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
+|+|++++.++.+|+.|+..+||||||||||+++++|+...++++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999997654455566778999999999999999999999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
|+|++||||||++|+|++||.++|.+||+.|+++.++..++|++.||+.|+||||+||+++|++|++.|.++
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.6e-43 Score=404.51 Aligned_cols=274 Identities=38% Similarity=0.625 Sum_probs=242.2
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+++|++++++|+.++|+++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34689999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
++.|.+++.++.+|+.|+..+||||||||||+++++|+.. .++...+++++|+.+||++..+.+|+||+|||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999988653 2344567999999999999888899999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 455 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~------- 455 (582)
|++|+||||||+.|++++||.++|.+||+.|+++.++..++|+..+|..|+||+++||.++|++|++.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ----------CCccCHHHHHHHHHHHHcCccCccccc---cccchhhHHHHHHHHHHH
Q 007989 456 ----------KAAISSKEIDDSIDRIVAGMEGTVMTD---GKSKSLVAYHEVGHAICG 500 (582)
Q Consensus 456 ----------~~~It~~dl~~A~~~v~~g~~~~~~~~---~~~k~~va~hEaGhalv~ 500 (582)
...|+.+||..|+..+.+...+..... .....+..+.++...+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e 491 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQE 491 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTT
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHH
Confidence 235788899999987766544332211 112223455666666543
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.7e-41 Score=338.40 Aligned_cols=255 Identities=67% Similarity=1.089 Sum_probs=234.3
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
+.+..++.+|+||+|++++++++.+++.++.+++.|..+|...|++++|+||||||||++|+++|++++.|++.++++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
.+.+.+.+.+.++.+|+.+....||++||||+|.++..++....++..+....+++++..++++..+.+++||++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 99888988999999999999999999999999999988876655667777889999999999988888999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 460 (582)
.+|++++|++||++.+.+++|+.++|.+|++.+++..++.+++++..++..|+|||++||.++|++|+..|.++++..|+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~ 241 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 241 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 007989 461 SKEIDDSIDRIVAGM 475 (582)
Q Consensus 461 ~~dl~~A~~~v~~g~ 475 (582)
.+|+++|++++..|.
T Consensus 242 ~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 242 MVEFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999987764
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.7e-39 Score=332.79 Aligned_cols=248 Identities=40% Similarity=0.742 Sum_probs=223.2
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..+.++|+||+|+++++++|.+.+.. +.+|+.|..+|..+++++||+||||||||++|+++|++++.+|+.++|+++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45679999999999999999999887 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.++|.....++.+|+.+....||||||||+|.+...++.............+++||..++++....+++||+|||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999987765432222233456788999999988877899999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC-------
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 455 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~------- 455 (582)
|++++|||||++.+++++|+.++|.+|++.++++.++..+++++.++..+.||+|+||.++|++|+..|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998888888999999999999999999999999999987642
Q ss_pred ------------------CCccCHHHHHHHHHHH
Q 007989 456 ------------------KAAISSKEIDDSIDRI 471 (582)
Q Consensus 456 ------------------~~~It~~dl~~A~~~v 471 (582)
...|+.+||++|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1357888888887654
No 13
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=329.06 Aligned_cols=247 Identities=40% Similarity=0.727 Sum_probs=209.0
Q ss_pred CCCCcccccccchHHHHHHHHHH-HHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v-~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.++++|+||+|++++|++|++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++.+.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 45789999999999999999855 55999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
+.+...+.++.+|+.++...||++|+||+|.++..++... .......+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888889999999999889999999999999976654321 1223457899999999988888899999999999999
Q ss_pred ccccCCCCccceeeccCCCHHHHHHHHHHHcCC---CCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHh----
Q 007989 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---KKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRR---- 454 (582)
Q Consensus 384 ~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~---~~l~~dvdl~~lA~~t~--G~sgadL~~lv~eA~~~A~r~---- 454 (582)
++++||||||+.|++++|+.++|.+||+.++++ .++..+++++.+|..+. ||||+||.++|++|++.|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 34567899999998754 999999999999999999875
Q ss_pred -------CCCccCHHHHHHHHHHHHcC
Q 007989 455 -------GKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 455 -------~~~~It~~dl~~A~~~v~~g 474 (582)
+...|+++||++|+.++.+.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCC
Confidence 23479999999999876553
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.5e-38 Score=319.74 Aligned_cols=254 Identities=46% Similarity=0.776 Sum_probs=237.9
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
....+.++|+||+|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 4456789999999999999999998876 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~ 380 (582)
...+.|.....++.+|..++...|+||||||+|.+..++.....++..+.+..+.+++..++++....+++||+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999888876665667778899999999999888888999999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccC
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It 460 (582)
.+|++++|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.++++..|+
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCc
Q 007989 461 SKEIDDSIDRIVAGM 475 (582)
Q Consensus 461 ~~dl~~A~~~v~~g~ 475 (582)
.+|+.+|+.++....
T Consensus 248 ~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987643
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=318.04 Aligned_cols=253 Identities=53% Similarity=0.900 Sum_probs=205.3
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhh
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~v 305 (582)
++++|+||+|++++|+.+++++..+.+++.|..+|...|+++||+||||||||++|+++|++++.|++.++|+++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCC-CChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc
Q 007989 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG-GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 306 G~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~ 384 (582)
+.+...++.+|+.+....|+||||||+|.+..++.....+ .+.+.+..+++++.++++.....+++||++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 8888899999999999999999999999998766442211 234556788999999998877788999999999999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvd--l~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 462 (582)
+++|+|||++.+++++|+.++|.+|++.+++...+..+.+ ...++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999988776654433 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCccCc
Q 007989 463 EIDDSIDRIVAGMEGT 478 (582)
Q Consensus 463 dl~~A~~~v~~g~~~~ 478 (582)
|+.+|+.++..+..++
T Consensus 241 d~~~a~~~~~~~~~~~ 256 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKK 256 (262)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccChhhh
Confidence 9999999998776544
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3e-37 Score=309.40 Aligned_cols=246 Identities=67% Similarity=1.114 Sum_probs=222.2
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
...+.++|+|++|.+++++++++++..+.++..+...+..+|+|++|+||||||||+|+++++++.+.+++.+++.++..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.+.+.....++.+|+.+....|+++|+||+|.++..+..+......+..+.+++++.++++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999888899999999999987765433344667788899999999998877789999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~ 462 (582)
|++++|++||++.+++++|+.++|.+|++.+++...+..++++..++..|+|++++||.++|++|+..|.+++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999988899999
Q ss_pred HHHHHH
Q 007989 463 EIDDSI 468 (582)
Q Consensus 463 dl~~A~ 468 (582)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
No 17
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=6e-37 Score=312.03 Aligned_cols=260 Identities=64% Similarity=1.075 Sum_probs=225.6
Q ss_pred CCcccccccccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 208 ~~~~~~~~s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
...+.+.+++..... ..++++|+|++|.+++++++.+++..+..+..+...+...|+|++|+||||||||+|++++++.
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 18 DSAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp --------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 345666666655443 3478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 288 ~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
.+.+++.+++.++.+.+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+++++.++++....
T Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 99999999999998888888888899999999888899999999999987665433334567788999999999988777
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
..++++++||.|+.+|++++|++||++.+++++|+.++|.+|++.+++...+..++++..++..|+|++++||+++|++|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~ 468 (582)
+..|.+++...|+.+|+++|+
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 999999888899999999875
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=319.39 Aligned_cols=225 Identities=36% Similarity=0.626 Sum_probs=203.5
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechhHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 301 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~~~ 301 (582)
..++++|+||+|++++|+.|++.+.+ +++|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45689999999999999999998876 888888763 35678999999999999999999999999 8999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCccc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~~~ 380 (582)
..+.|...+.++.+|+.++..+||||||||+|.+..+++.. ........+++++.+++++.. ..+++||+|||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877653 244566789999999998863 57899999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
.+|++++| ||++.+++++|+.++|.+|++.+++..+.. .+.+++.++..+.||+++||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877654 6778999999999999999999999999998875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.8e-37 Score=320.50 Aligned_cols=229 Identities=35% Similarity=0.621 Sum_probs=202.0
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
.....++++|+||+|++++|+.|.+.+.+ ++.|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++|++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 45567889999999999999999998866 677777665 5677899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~-~~~~viVIaaTN~ 378 (582)
+...+.|.....++.+|+.++...||||||||||.+..+++.+ ........+++++..++++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999998777543 22334567889999999874 4568999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
++.||++++| ||++.+++++|+.++|.+|++.++++.+.. .+.+++.++..+.||+++||.++|++|...|.++.
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887654 66789999999999999999999999999998763
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.1e-36 Score=328.19 Aligned_cols=264 Identities=40% Similarity=0.668 Sum_probs=229.6
Q ss_pred CCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
..++|++|+|.+++++++++.+.. +++|+.|..+|...|+++||+||||||||++|+++|.+++.||+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc
Q 007989 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 305 vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~ 384 (582)
.|.....++.+|+.|....||+|||||||.+..+++.. ..+....++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998877542 244566788999999998888889999999999999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-------
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA------- 457 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~------- 457 (582)
+++|+|||++.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999998888899999999999999999999999999999987643
Q ss_pred ----------ccCHHHHHHHHHHHHcCccCccccccccchhhHHHHHH
Q 007989 458 ----------AISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVG 495 (582)
Q Consensus 458 ----------~It~~dl~~A~~~v~~g~~~~~~~~~~~k~~va~hEaG 495 (582)
.|+++||++|+.++.+...+... .+...+.|.++|
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~---~e~p~v~W~dig 480 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETV---VEVPQVTWEDIG 480 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGG---C-----------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhccc---ccCCCCCHHHcC
Confidence 48899999999877654433222 123346666666
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.3e-36 Score=315.53 Aligned_cols=226 Identities=35% Similarity=0.632 Sum_probs=194.6
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
...++++|+||+|++++++.|.+.+.. ++.|+.|.. +..+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 356789999999999999999998876 688888776 677889999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCccc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~~~ 380 (582)
..+.|.....++.+|..++...||||||||+|.+...++.+ ........+++|+..|+++.. ..+++||++||+++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999998776542 234556788999999988754 56899999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
.||++++| ||++.+++++|+.++|.+|++.+++..+.. .+.+++.|+..+.||+++||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887643 5778999999999999999999999999999876
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3.1e-38 Score=318.40 Aligned_cols=251 Identities=62% Similarity=1.016 Sum_probs=220.8
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
..+.++|+|++|.+++++.+.+++.++.+++.|..+|.+.|+++||+||||||||++|+++|.+++.||+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCC-CCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCcccc
Q 007989 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADI 381 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~~~~ 381 (582)
+.|.+...++.+|+.+....|+||||||+|.+..++..+ ....+.+..+.+++|+..+++... ..+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888899999999999999999999997765321 112233344567889999987654 345999999999999
Q ss_pred ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 007989 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (582)
Q Consensus 382 LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~ 461 (582)
+|++++|+|||+..+++++|+.++|.++++.+++...+..+.+++.++..+.|++++||.++|++|+..|.+++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999998888888889999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHcC
Q 007989 462 KEIDDSIDRIVAG 474 (582)
Q Consensus 462 ~dl~~A~~~v~~g 474 (582)
+|+.+|+.++.+.
T Consensus 244 ~~~~~a~~~~~~~ 256 (268)
T 2r62_A 244 QHLKEAVERGIAG 256 (268)
T ss_dssp HHHHTSCTTCCCC
T ss_pred HHHHHHHHHHhhc
Confidence 9999888765543
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2e-34 Score=313.36 Aligned_cols=227 Identities=35% Similarity=0.624 Sum_probs=194.2
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechh
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSE 299 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~ 299 (582)
....++++|+||+|++++++.|.+.+.. +++|+.|.. +..+++++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 4456789999999999999999998765 777777663 35678999999999999999999999999 89999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC-CCCeEEEEecCc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~-~~~viVIaaTN~ 378 (582)
+...+.|.....++.+|..++...||||||||||.+...++.. ........+++||..|+++.. ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998777543 244466788999999998763 578999999999
Q ss_pred cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Q 007989 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (582)
Q Consensus 379 ~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~ 454 (582)
++.+|++++| ||++.+++++|+.++|.+|++.++...+.. .+.++..|+..+.||+++||.++|++|++.|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877643 5678999999999999999999999999998875
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=289.06 Aligned_cols=245 Identities=33% Similarity=0.579 Sum_probs=210.3
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..++++|+||+|++++++.|.+.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|+.++|+++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 44678999999999999999998876 77787776654 67899999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecCccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~--~~~viVIaaTN~~~ 380 (582)
.+.|.....++.+|..+....|+||||||||.+...+..+ .+......+++++..+++... ..+++||++||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999998776432 244566788899999987653 46799999999999
Q ss_pred cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC----
Q 007989 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG---- 455 (582)
Q Consensus 381 ~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~---- 455 (582)
.+|++++| ||+..+++++|+.++|.+|++.+++..... .+.+++.++..+.||+++||.++|++|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999988765432 45568999999999999999999999999988753
Q ss_pred --------CCccCHHHHHHHHHHHHcC
Q 007989 456 --------KAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 456 --------~~~It~~dl~~A~~~v~~g 474 (582)
...|+.+||..|+.++.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987653
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-32 Score=279.46 Aligned_cols=244 Identities=38% Similarity=0.595 Sum_probs=206.4
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
..+.++++|+|++|++++++.+.+.+.. +.+|+.|...+ .+++++||+||||||||++|+++|++++.+|+.++|+++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 4456788999999999999999998866 66777776654 467899999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC---CCeEEEEecC
Q 007989 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---TGIIVIAATN 377 (582)
Q Consensus 301 ~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~---~~viVIaaTN 377 (582)
...+.+.+...++.+|..+....|+||||||+|.+...+.... ........++++..+++.... .+++||++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 9888888888999999999999999999999999987765422 222345677888888876543 5799999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCC
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~ 456 (582)
.++.+|+++++ ||+..+++++|+.++|..|++.+++..... .+.++..++..+.|++++||.++|++|+..|.++..
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999988765432 345688999999999999999999999999988752
Q ss_pred ------------CccCHHHHHHHHHHH
Q 007989 457 ------------AAISSKEIDDSIDRI 471 (582)
Q Consensus 457 ------------~~It~~dl~~A~~~v 471 (582)
..|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSC
T ss_pred hhhcccccccccCCcCHHHHHHHHHHc
Confidence 579999999988654
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=3.2e-35 Score=340.78 Aligned_cols=233 Identities=42% Similarity=0.774 Sum_probs=206.9
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
...+.++|+|++|++++|+.+.+.+.+ +++++.|..++..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345689999999999999999998876 7788888999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccc
Q 007989 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (582)
Q Consensus 302 ~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~ 381 (582)
..|+|..+..++.+|+.++...||||||||||.++..++...+........++++||.+||++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998887653322334567899999999999988889999999999999
Q ss_pred ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 382 LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
||++++|||||++.+++++|+.++|.+||+.++++.++..+++++.++..+.|||++||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999998875
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=285.78 Aligned_cols=246 Identities=37% Similarity=0.589 Sum_probs=201.1
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
+.+..++++|+||+|++++++.+.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 45566789999999999999999998766 56677666665 45789999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccC--CCCeEEEEecC
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATN 377 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~--~~~viVIaaTN 377 (582)
+...+.|.....++.+|+.++...|+||||||||.++..+..+ ........++.|+..+++... ..+++||++||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999997766432 233456778888888887654 45799999999
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh--
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR-- 454 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~-- 454 (582)
+++.+|++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.|+++++|.++|++|...+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999988765432 3456889999999999999999999999999887
Q ss_pred ----------CCCccCHHHHHHHHHHHH
Q 007989 455 ----------GKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 455 ----------~~~~It~~dl~~A~~~v~ 472 (582)
....|+.+||..++.++.
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 345789999999987653
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=5.3e-32 Score=278.64 Aligned_cols=228 Identities=17% Similarity=0.248 Sum_probs=159.3
Q ss_pred hcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHH----hhCCCeEEEEeCCCc
Q 007989 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDA 334 (582)
Q Consensus 259 ~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 334 (582)
.+.+.|+++||+||||||||++|+++|++++.+|+.++|+++.+.++|.....++.+|+.| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHhhhcCc-----------cCCCCeEEEEecCccccccccccCCCCccceeeccCCCH
Q 007989 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (582)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-----------~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~ 403 (582)
++.+++.. .......+...+.|+..+|+. ....+++||+|||+++.+|++++|||||++.+. .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98755321 111122344557777777633 245679999999999999999999999998886 5899
Q ss_pred HHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHH-------HHHHHHHHHh-CCCccCHHHHHHHHHHHHcCc
Q 007989 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL-------NEAAILAGRR-GKAAISSKEIDDSIDRIVAGM 475 (582)
Q Consensus 404 ~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv-------~eA~~~A~r~-~~~~It~~dl~~A~~~v~~g~ 475 (582)
++|.+|++.++... +++.+.++..+.||++++|..+. .++.....++ +-. .+ -.+++...
T Consensus 188 ~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~-----~~---~~~~~~~~ 255 (293)
T 3t15_A 188 EDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIE-----KI---GDKLLNSF 255 (293)
T ss_dssp HHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCST-----TC---HHHHTSCS
T ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHH-----HH---HHHHHcCC
Confidence 99999999887643 45678889999999999886431 1111111111 111 11 11222222
Q ss_pred cCccccccccchhhHHHHHHHHHHHh
Q 007989 476 EGTVMTDGKSKSLVAYHEVGHAICGT 501 (582)
Q Consensus 476 ~~~~~~~~~~k~~va~hEaGhalv~~ 501 (582)
.........+....++||+||++++.
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHH
Confidence 22223344567788999999999864
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=9.7e-29 Score=286.52 Aligned_cols=247 Identities=42% Similarity=0.692 Sum_probs=223.0
Q ss_pred cCCCCcccccccchHHHHHHHHHHHH-hcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
..+.++|+||+|++++++.|.+.+.. +.+|+.|..++..+++++||+||||||||+||+++|++++.+++.++|.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34579999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
.+.+.....++.+|+.+....|+++||||+|.+..+++.. ..+.....+.+++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998776532 2345567888999999998888899999999999999
Q ss_pred cccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCC-----
Q 007989 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA----- 457 (582)
Q Consensus 383 D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~----- 457 (582)
|+++.+++||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.||+++|+..++++|+..+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999999999999999999999999999999999999888899999999999999999999999999988776432
Q ss_pred ------------ccCHHHHHHHHHHHHc
Q 007989 458 ------------AISSKEIDDSIDRIVA 473 (582)
Q Consensus 458 ------------~It~~dl~~A~~~v~~ 473 (582)
.++.+|+..++....+
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCc
Confidence 3556677777766543
No 30
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.96 E-value=3.3e-30 Score=256.58 Aligned_cols=110 Identities=42% Similarity=0.675 Sum_probs=83.0
Q ss_pred cCccCcc-ccccccchhhHHHHHHHHHHHhhcCCCCCCCceeeecCCCcceEEEeccCCCCCcCCHHHHHHHHHHhhhhH
Q 007989 473 AGMEGTV-MTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGR 551 (582)
Q Consensus 473 ~g~~~~~-~~~~~~k~~va~hEaGhalv~~~~~~~~~v~kvti~prg~a~g~~~~~p~~~~~~~t~~~l~~~i~~~lgGr 551 (582)
+|.++++ ..++++|+++||||+|||||++++++.+||+||||+|||+++|||+++|.+|++++||.+|+++|+++||||
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGR 81 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGR 81 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHH
Confidence 4666664 567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCcccChhhHHHHHHHHHHhcC
Q 007989 552 AAEEVIFGEPEVTTGAAGDLQQITGLAKQVI 582 (582)
Q Consensus 552 aAe~~~~g~~~~~~ga~~Dl~~at~~a~~mv 582 (582)
|||+++||.+++||||+|||++||+||++||
T Consensus 82 aAEelifG~g~vttGA~~Dl~~AT~iAr~MV 112 (238)
T 2di4_A 82 AAEEVFFGKDGITTGAENDLQRATDLAYRMV 112 (238)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccChHhHHHHHHHHHHHHH
Confidence 9999999654799999999999999999997
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=7.4e-27 Score=254.41 Aligned_cols=205 Identities=25% Similarity=0.357 Sum_probs=146.1
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~~ 302 (582)
.+...|++++|++++++.+.++++.++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999998877653 455778999999999999999999999999 9999999999999
Q ss_pred HhhhhhhhHHHHHHHHH---hhCCCeEEEEeCCCcccccCCCCCCCCChHH-H---------------HHHHHHHhhhc-
Q 007989 303 MFVGVGASRVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDER-E---------------QTLNQLLTEMD- 362 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A---~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~-~---------------~~L~~LL~~ld- 362 (582)
.++|.... ++.+|+.| +...||||||||+|.++.+|+....++.... . ...++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 7788999999999999988865322111110 1 11233455543
Q ss_pred -CccCCCCeEEEEecCccccccccccCCCCccc--eeeccCCC--HHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcH
Q 007989 363 -GFEGNTGIIVIAATNRADILDSALLRPGRFDR--QVTVDVPD--IRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 437 (582)
Q Consensus 363 -~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr--~I~i~~Pd--~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sg 437 (582)
+......++|++|||+++.+|+++.||||||+ .+.++.|+ .++|.+|++.+.. .|++.++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 33344446666999999999999999999999 66777774 5778888776542 268899999999 9
Q ss_pred HHHHHHHHH
Q 007989 438 ADLANLLNE 446 (582)
Q Consensus 438 adL~~lv~e 446 (582)
+||.++|+.
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999975
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=6.4e-24 Score=217.59 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=172.7
Q ss_pred cc-ccccchHHHHHHHHHHHHhcCchhhhhhcCCC---CceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeech
Q 007989 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (582)
Q Consensus 230 f~-dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~---pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s 298 (582)
++ +|+|++++|+.+.+.+..+..+..+...|... +.++||+||||||||++|+++|+++ ..++++++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 79999999999999999877777777777554 3469999999999999999999987 3499999999
Q ss_pred hHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 299 ~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
++...+.|.....++.+|+.+ .++||||||+|.+...++. .......++.|+..++. ...++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--NRDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhc--CCCCEEEEEeCCh
Confidence 999988898888889999887 3579999999999755432 12234566777777764 3457899999987
Q ss_pred cc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCc-cccHHHHHH--------hCCCCcHHHHHHHH
Q 007989 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAM--------RTPGFSGADLANLL 444 (582)
Q Consensus 379 ~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~-dvdl~~lA~--------~t~G~sgadL~~lv 444 (582)
++ .++|+|++ ||+..+++++|+.+++.+|++.++......- +..+..++. .++| +++++.+++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g-n~r~l~~~l 255 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFA-NARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCC-cHHHHHHHH
Confidence 54 35799999 9999999999999999999999887654332 122444544 4566 899999999
Q ss_pred HHHHHHHHHh----CCCccCHHHHH
Q 007989 445 NEAAILAGRR----GKAAISSKEID 465 (582)
Q Consensus 445 ~eA~~~A~r~----~~~~It~~dl~ 465 (582)
+.|...+..+ ....++.+++.
T Consensus 256 ~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 256 DRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHh
Confidence 9999866554 34566666655
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=3.1e-23 Score=217.65 Aligned_cols=253 Identities=19% Similarity=0.271 Sum_probs=167.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechhHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 303 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~~~~~ 303 (582)
+..+|++++|.+++++.+..+...+... ..+++++||+||||||||++|+++|.+++ .||+.++|..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4456999999999999988888776543 33467999999999999999999999987 48999988764321
Q ss_pred h-------------------------------------------------hhhhhhHHHHHHHHHhh---------CCCe
Q 007989 304 F-------------------------------------------------VGVGASRVRDLFKKAKE---------NAPC 325 (582)
Q Consensus 304 ~-------------------------------------------------vG~~~~~vr~lF~~A~~---------~~P~ 325 (582)
+ .|.....++..|..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 1 11123455666655432 1278
Q ss_pred EEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec-----------CccccccccccCCCCccc
Q 007989 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-----------NRADILDSALLRPGRFDR 394 (582)
Q Consensus 326 ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT-----------N~~~~LD~aLlrpgRFdr 394 (582)
||||||+|.+ ..+ .++.|+..++.. ...++++++. |.++.++++|++ ||..
T Consensus 192 vl~IDEi~~l-----------~~~---~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 192 VLFIDEVHML-----------DIE---SFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp EEEEESGGGS-----------BHH---HHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred eEEEhhcccc-----------ChH---HHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 9999999998 223 445555555432 2245555554 357889999999 9975
Q ss_pred eeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 007989 395 QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~ 473 (582)
+.+++|+.+++.+|++.++...... ++..++.++..+.+.+++++.++|+.|...|..++...|+.+|+++++..+..
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBC
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999887653332 23347788888873399999999999999999999999999999999986442
Q ss_pred CccCccccccccchhhHHHHHHHHHHHhhcCC
Q 007989 474 GMEGTVMTDGKSKSLVAYHEVGHAICGTLTPG 505 (582)
Q Consensus 474 g~~~~~~~~~~~k~~va~hEaGhalv~~~~~~ 505 (582)
.........+.+ +..-++|.++.-....+.+
T Consensus 333 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 363 (368)
T 3uk6_A 333 ESRSTQYMKEYQ-DAFLFNELKGETMDTSLEH 363 (368)
T ss_dssp HHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHhh-hhhhhhcCCccccccchhh
Confidence 211111122222 2344777776655444443
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=2.6e-22 Score=208.55 Aligned_cols=223 Identities=20% Similarity=0.222 Sum_probs=170.3
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
.+.++..+.+|++++|.+++++.+.+.+...+.+ ...+.++||+||||||||++|+++|.+++.+|+.++|+.
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 4555666779999999999999999988765321 234568999999999999999999999999999999976
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc-------------cC
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-------------EG 366 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-------------~~ 366 (582)
+. ....+...+.. ...+++|||||||.+ ....+..+...+++-... ..
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 53 12233344432 345789999999998 233444444444332100 00
Q ss_pred CCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 367 ~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
..++++|++||....++++|++ ||+..+.+++|+.+++.++++.++...... ++..++.++..++| +++++.++++
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~ 228 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLK 228 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHH
Confidence 1248999999999999999999 999999999999999999999887655433 23346788888988 9999999999
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 446 EAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 446 eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
.+...|...+...|+.+++..++...
T Consensus 229 ~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 229 RVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99988888888899999999998764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=2.2e-21 Score=199.82 Aligned_cols=218 Identities=22% Similarity=0.256 Sum_probs=167.7
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
+..+.+|++++|.+++++.+.+.+...... ...+.++||+||||||||++|++++.+++.+|+.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345668999999999999999888764321 234568999999999999999999999999999999876532
Q ss_pred hhhhhhhHHHHHHHHHhh--CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC-----cc--------CCC
Q 007989 304 FVGVGASRVRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (582)
Q Consensus 304 ~vG~~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~-----~~--------~~~ 368 (582)
..+++..... ..+++|||||+|.+ ....+..+..++....- .. ...
T Consensus 77 --------~~~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 --------PGDLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp --------HHHHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred --------hHHHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1223333322 45789999999998 33344455555543210 00 113
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
++++|++||.++.++++|++ ||+..+.+++|+.+++.++++.++...... ++..++.++..++| +++++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 58899999999999999998 998899999999999999999887654432 23347888889988 899999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
...|...+...|+.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 888877777889999999888764
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6.8e-21 Score=194.20 Aligned_cols=235 Identities=24% Similarity=0.356 Sum_probs=162.3
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhh-cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~-g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG~ 307 (582)
++|+|++++++.+...+.. +..+...... +...|.++||+||||||||++|+++|..++.+++.++|+++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999987764 2221111111 1245779999999999999999999999999999999998876 45553
Q ss_pred h-hhHHHHHHHHH-----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEE
Q 007989 308 G-ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (582)
Q Consensus 308 ~-~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~--------~~~~viVI 373 (582)
. ...+++++..+ ....++||||||+|.+...... .+.....+...+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 2 34466666532 1123679999999999765432 1122233334666777666531 23468888
Q ss_pred Ee----cCccccccccccCCCCccceeeccCCCHHHHHHHHHHHc-------------CCC--CCCccccHHHHHHhC--
Q 007989 374 AA----TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------------SNK--KFDADVSLDVIAMRT-- 432 (582)
Q Consensus 374 aa----TN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l-------------~~~--~l~~dvdl~~lA~~t-- 432 (582)
++ ++.+..+++++++ ||+..+.+++|+.+++.+|++..+ ... .+++ ..++.++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~l~~~~~~ 249 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTT-DAVKKIAEAAFR 249 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECH-HHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCH-HHHHHHHHHhhh
Confidence 88 5678899999998 999889999999999999998421 111 1222 2356666654
Q ss_pred -----CCCcHHHHHHHHHHHHHHHHHh-----CCC-ccCHHHHHHHHHH
Q 007989 433 -----PGFSGADLANLLNEAAILAGRR-----GKA-AISSKEIDDSIDR 470 (582)
Q Consensus 433 -----~G~sgadL~~lv~eA~~~A~r~-----~~~-~It~~dl~~A~~~ 470 (582)
++.+.+++.++++.+...+..+ +.. .|+.+++++++..
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 1349999999999987544322 222 4999999988764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=1.3e-20 Score=190.50 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=145.4
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH-HHhhhh
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EMFVGV 307 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~-~~~vG~ 307 (582)
....++|.+++.+.+.+....+. ..+...+...++++||+||||||||++|+++|.+.+.||+.+++++.. ....+.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 34678899888777776422221 112223456678999999999999999999999999999999887522 111122
Q ss_pred hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-CCCCeEEEEecCccccccc-c
Q 007989 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDS-A 385 (582)
Q Consensus 308 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~-~~~~viVIaaTN~~~~LD~-a 385 (582)
....++.+|+.+....+++|||||+|.+...+..+ .......++.|...+++.. ...+++||++||.++.+++ .
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 33567889999888889999999999997654321 1222345555555566543 3456889999999999988 5
Q ss_pred ccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCC----cHHHHHHHHHHHHH
Q 007989 386 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF----SGADLANLLNEAAI 449 (582)
Q Consensus 386 LlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~----sgadL~~lv~eA~~ 449 (582)
+.+ ||+..+.+ |+..+|.+|.+.......+ .+.++..++..+.|+ +.+++.++++.|..
T Consensus 185 l~~--rf~~~i~~--p~l~~r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 185 MLN--AFSTTIHV--PNIATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp CTT--TSSEEEEC--CCEEEHHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred hhc--ccceEEcC--CCccHHHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 655 99877766 4554555555544333334 344588889888887 68888888877753
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=3.6e-20 Score=200.98 Aligned_cols=221 Identities=18% Similarity=0.272 Sum_probs=158.2
Q ss_pred CCCcccccc-cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechh
Q 007989 226 TGVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (582)
Q Consensus 226 ~~~~f~dI~-G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~ 299 (582)
+..+|++++ |.+... ....+......+. . +.+++|+||||||||+||+++++++ +.+++++++++
T Consensus 100 ~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp TTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456899988 644332 2222222233321 2 5689999999999999999999988 89999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
+...+.+.........|.......|++|||||+|.+..+ ...++.+..++..+ ......+||++.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l---~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 171 FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNEL---HDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHH---HTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHH---HHCCCeEEEEECCCH
Confidence 877665543332233444444446889999999999421 12333333444332 223456666666666
Q ss_pred cc---ccccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCC--CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 380 DI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 380 ~~---LD~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
.. ++++|++ ||+ ..+.+++|+.++|.+|++..+.. ..+++++ ++.++..++| +.+++.++++.+...|.
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 65 7899999 886 68999999999999999988753 3344443 7889999998 99999999999999987
Q ss_pred HhCCCccCHHHHHHHHHHHH
Q 007989 453 RRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 453 r~~~~~It~~dl~~A~~~v~ 472 (582)
..++ .|+.+++++++....
T Consensus 315 ~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 315 TTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HSSS-CCCHHHHHHHTSTTT
T ss_pred HhCC-CCCHHHHHHHHHHHh
Confidence 7664 699999999987654
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=5.6e-21 Score=212.51 Aligned_cols=225 Identities=23% Similarity=0.301 Sum_probs=151.9
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH---
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--- 302 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~--- 302 (582)
...-.+|++|++++++.+.+.+..-.... .. .+..++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 34556889999999999987665321110 01 3457999999999999999999999999999999877544
Q ss_pred ------HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC---------
Q 007989 303 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------- 367 (582)
Q Consensus 303 ------~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~--------- 367 (582)
.++|.....+...|..+....| |+||||||.+...+. ....+.|+..||.....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCe
Confidence 5667777777888888766665 999999999964432 22456677777643211
Q ss_pred ----CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcC-----CCCCC------ccccHHHHHH-h
Q 007989 368 ----TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-----NKKFD------ADVSLDVIAM-R 431 (582)
Q Consensus 368 ----~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~-----~~~l~------~dvdl~~lA~-~ 431 (582)
.++++|+|||+++.++++|++ ||+ .|+++.|+.+++.+|++.++. ...+. ++..+..++. .
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 568999999999999999999 996 799999999999999998762 22221 1122444443 2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHh------CCCccCHHHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRR------GKAAISSKEIDDSIDR 470 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~------~~~~It~~dl~~A~~~ 470 (582)
+...+.++|++.+..++..|..+ +...|+.+++++++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 22237777777666665555443 3457999999988753
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.83 E-value=4.2e-20 Score=190.97 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=148.7
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
...|.++..+.+|+|++|.+++++.+.+.+. ....|..+|++||||||||++|+++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4567888889999999999999998888876 23456678999999999999999999999999999998
Q ss_pred hhHHHHhhhhhhhHHHHHHHHHhhC-----CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 298 SEFVEMFVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 298 s~~~~~~vG~~~~~vr~lF~~A~~~-----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
++.. ...+++.+...... .+++|||||+|.+.. .+.+..+..++++. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC-----CCCcEE
Confidence 7642 23444444443222 568999999999931 23344444444432 246788
Q ss_pred EEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHc-------C--CCCCCccccHHHHHHhCCCCcHHHHHHH
Q 007989 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------S--NKKFDADVSLDVIAMRTPGFSGADLANL 443 (582)
Q Consensus 373 IaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l-------~--~~~l~~dvdl~~lA~~t~G~sgadL~~l 443 (582)
|++||.++.+++++++ ||. .+.+++|+.++|.+|++... . +..+++...++.++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 995 79999999999877655432 1 2233331447888999888 77777777
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 444 LNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 444 v~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
++.++ ....|+.+++.+++..
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHG------GGTCBCC---------
T ss_pred HHHHh------ccCCCCHHHHHHHhCC
Confidence 77665 2335888888876543
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=2.5e-19 Score=171.81 Aligned_cols=206 Identities=22% Similarity=0.228 Sum_probs=152.4
Q ss_pred ccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEe
Q 007989 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (582)
Q Consensus 221 ~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~i 295 (582)
+.+...+.+|++++|.+++++.+.+.+..- .+.+++|+||||||||++|++++.++ ..+++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 445566789999999999999888877521 12259999999999999999999875 5678888
Q ss_pred echhHHHHhhhhhhhHHHHHHHHHh------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCC
Q 007989 296 SGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (582)
Q Consensus 296 s~s~~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~ 369 (582)
++++.... ..++..+.... ...+++|+|||+|.+ .......+..++.. ...+
T Consensus 75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~-----~~~~ 132 (226)
T 2chg_A 75 NASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEM-----YSKS 132 (226)
T ss_dssp ETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHH-----TTTT
T ss_pred ccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHh-----cCCC
Confidence 87653321 12222232222 246889999999998 22333444444443 2356
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
+++|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...... ++..++.++..+.| +++.+.++++.++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7889999999999999999 887 89999999999999999877543322 23346778888888 8999999888887
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~ 469 (582)
..+ ..|+.+|+++++.
T Consensus 209 ~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 209 AIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HTC-----SCBCHHHHHHHHH
T ss_pred hcC-----ceecHHHHHHHhc
Confidence 654 5899999998875
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.82 E-value=1.3e-19 Score=189.69 Aligned_cols=224 Identities=17% Similarity=0.225 Sum_probs=164.8
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeech
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s 298 (582)
..+++++|.++.++.+.+.+..... ...+.+++|+||||||||++|+++++++ +.++++++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3558999999999988876653311 2346689999999999999999999988 8899999987
Q ss_pred hHHH------Hhh----------hhhhhH-HHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh
Q 007989 299 EFVE------MFV----------GVGASR-VRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (582)
Q Consensus 299 ~~~~------~~v----------G~~~~~-vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ 360 (582)
...+ ... +..... ...+++.... ..|++|||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 5321 111 111222 3444444433 348899999999994321 145677888877
Q ss_pred hcCccCCCCeEEEEecCcc---ccccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCC----CCCCccccHHHHHHhC
Q 007989 361 MDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRT 432 (582)
Q Consensus 361 ld~~~~~~~viVIaaTN~~---~~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~lA~~t 432 (582)
++....+.++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.++++.++.. ..++++ .++.++..+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~ 235 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAALA 235 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 7654324678999999987 778999998 8875 8999999999999999987643 233333 366677666
Q ss_pred C---CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 433 P---GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 433 ~---G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
. | +++.+.++++.|...|..++...|+.+++.+|+..+.
T Consensus 236 ~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 236 AREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5 8 8999999999999999888889999999999988764
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=1.3e-19 Score=191.04 Aligned_cols=221 Identities=25% Similarity=0.290 Sum_probs=152.2
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhh---hhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH-hhhh
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFT---AIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV 307 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~---~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~-~vG~ 307 (582)
.|+|++++++.+...+.......... ......++++||+||||||||++|+++|..++.||+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885321111100 0112356799999999999999999999999999999999998754 7776
Q ss_pred h-hhHHHHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-----------------
Q 007989 308 G-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------- 365 (582)
Q Consensus 308 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~----------------- 365 (582)
. ...++.+|..+ ....++||||||||.+...+.....+.+...+.+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 3345789999999999877655433334444457888888887421
Q ss_pred --CCCCeEEEEecCcc----------------------------------------cc-----ccccccCCCCccceeec
Q 007989 366 --GNTGIIVIAATNRA----------------------------------------DI-----LDSALLRPGRFDRQVTV 398 (582)
Q Consensus 366 --~~~~viVIaaTN~~----------------------------------------~~-----LD~aLlrpgRFdr~I~i 398 (582)
..+++++|+++|.. +. ++|+|++ ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22345555555532 11 6788887 99999999
Q ss_pred cCCCHHHHHHHHHHHc-----------CCCCCC---ccccHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHhC
Q 007989 399 DVPDIRGRTEILKVHG-----------SNKKFD---ADVSLDVIA---MRTPGFSGADLANLLNEAAILAGRRG 455 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~~l-----------~~~~l~---~dvdl~~lA---~~t~G~sgadL~~lv~eA~~~A~r~~ 455 (582)
.+|+.+++.+|+...+ ...... .+..++.|+ ..++ ++.++|+++++.+...+..+.
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~-~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK-TGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT-CTTTTHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc-cCchHHHHHHHHHHHHHHHhc
Confidence 9999999999987511 111211 112245555 3345 478999999999988876653
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=1.5e-19 Score=196.48 Aligned_cols=207 Identities=24% Similarity=0.296 Sum_probs=155.0
Q ss_pred ccCCCCcccccccchHHH---HHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 223 EPNTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k---~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
+...+.+|++++|++.++ ..|...+..-+ +.++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 344567999999999999 66666665321 147999999999999999999999999999998743
Q ss_pred HHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
.+.+.++.+|+.+.. ..++||||||||.+... ..+.|+..++. ..+++|++
T Consensus 86 -------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 -------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEE
T ss_pred -------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEec
Confidence 233456666666642 46799999999999321 22345555542 45777777
Q ss_pred c--CccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC-------C-CccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 376 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------F-DADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 376 T--N~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~-------l-~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
| |....++++|++ |+. ++.+++|+.+++.++++..+.... . -++..++.++..++| +.+++.++++
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 6 555689999999 886 788999999999999998876521 1 122347888888988 9999999999
Q ss_pred HHHHHHHHh--CCCccCHHHHHHHHHH
Q 007989 446 EAAILAGRR--GKAAISSKEIDDSIDR 470 (582)
Q Consensus 446 eA~~~A~r~--~~~~It~~dl~~A~~~ 470 (582)
.++..+... +...||.+++++++.+
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999887533 4568999999988754
No 45
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=7.6e-21 Score=205.56 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=81.5
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhhhhhcCC-CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH-Hhhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~-l~~p~~~~~~g~~-~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~-~~vG~ 307 (582)
++|+|++++|+.+...+.. ++.+..+..+... .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999887754 3444433333333 5789999999999999999999999999999999999988 58885
Q ss_pred -hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe-cCcccccccc
Q 007989 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSA 385 (582)
Q Consensus 308 -~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa-TN~~~~LD~a 385 (582)
.++.++.+|+.+... +++||+|.+.... .......++++||.+||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999998775 4589988874322 1233467999999999999776554 555 9999999999
Q ss_pred ccCCCCccceeeccCCCHH-HHHHHHH
Q 007989 386 LLRPGRFDRQVTVDVPDIR-GRTEILK 411 (582)
Q Consensus 386 LlrpgRFdr~I~i~~Pd~~-eR~~Il~ 411 (582)
|+||||||+.|++++|+.. .|.+|+.
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999987 7888764
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.80 E-value=6e-19 Score=182.65 Aligned_cols=218 Identities=16% Similarity=0.231 Sum_probs=151.1
Q ss_pred CCCcccccc-cc--hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 226 TGVTFDDVA-GV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 226 ~~~~f~dI~-G~--d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
+..+|++++ |. ..+...+..++. .+ ...+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 456899997 53 334444444332 22 1235689999999999999999999988 89999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
+...+.+.........|..... .+++|||||+|.+.. ....++.+..++..+ ......+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~---~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTL---YLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHH---HHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHH---HHCCCeEEEEecCCh
Confidence 8876655433322233433333 378999999999842 113333444444332 223456777777777
Q ss_pred c---cccccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCC--CCCccccHHHHHHhCCCCcHHHHHHHHHHHHHH--
Q 007989 380 D---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNK--KFDADVSLDVIAMRTPGFSGADLANLLNEAAIL-- 450 (582)
Q Consensus 380 ~---~LD~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~--~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~-- 450 (582)
. .++++|.+ ||+ ..+.+++ +.++|.+|++.++... .++++ .++.++..+ | +.+++.++++.+...
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~-g-~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT-K-NVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC-S-SHHHHHHHHHHHHHHCH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC-C-CHHHHHHHHHHHHHcCH
Confidence 6 68999998 887 5788988 9999999999987643 34433 378899999 7 999999999998766
Q ss_pred -HHH-hCCCcc-CHHHHHHHHHHHH
Q 007989 451 -AGR-RGKAAI-SSKEIDDSIDRIV 472 (582)
Q Consensus 451 -A~r-~~~~~I-t~~dl~~A~~~v~ 472 (582)
+.. .+...| +.+++.+++....
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223457 8888888877654
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=1.4e-19 Score=199.90 Aligned_cols=231 Identities=19% Similarity=0.257 Sum_probs=154.2
Q ss_pred cccccccccCCCCcccccccchHHHHHHHHHHHHhc--CchhhhhhcC---CCCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 007989 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK--KPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (582)
Q Consensus 216 s~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~--~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LArAlA~e~~~ 290 (582)
....+|.+++.+.+|+|++|.+++++.+.+.+.... .+..|...|. ..++++||+||||||||++|+++|++++.
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345688999999999999999999999988876422 1122333333 36789999999999999999999999999
Q ss_pred CEEEeechhHHHHhhhhhh-------hHHHHHHHHH-----hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHH
Q 007989 291 PFFSISGSEFVEMFVGVGA-------SRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (582)
Q Consensus 291 pfi~is~s~~~~~~vG~~~-------~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (582)
+++.++|+++......... ..+..+|..+ ....++||||||+|.+.... ......+..++
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l 175 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFC 175 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHH
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHH
Confidence 9999999876543221100 1123344443 23568999999999995321 11123344444
Q ss_pred hhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC--CCCCccccHHHHHHhCCCCc
Q 007989 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFS 436 (582)
Q Consensus 359 ~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~lA~~t~G~s 436 (582)
.. .+..+++|+++.....+++ +.+ +...+.+++|+.+++.++++..+.. ..++++ .++.++..+.| +
T Consensus 176 ~~-----~~~~iIli~~~~~~~~l~~-l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-d 244 (516)
T 1sxj_A 176 RK-----TSTPLILICNERNLPKMRP-FDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-D 244 (516)
T ss_dssp HH-----CSSCEEEEESCTTSSTTGG-GTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-C
T ss_pred Hh-----cCCCEEEEEcCCCCccchh-hHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 32 2334566655544444543 443 4458999999999999999876543 344444 37889999988 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 437 gadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
.+++.++++.++. +...|+.+++.+++..
T Consensus 245 iR~~i~~L~~~~~-----~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 245 IRQVINLLSTIST-----TTKTINHENINEISKA 273 (516)
T ss_dssp HHHHHHHHTHHHH-----HSSCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----cCCCCchHHHHHHHHh
Confidence 7777777655432 3456888887776653
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=1.5e-18 Score=169.50 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=142.2
Q ss_pred CCCcccccccch---HHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh
Q 007989 226 TGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (582)
Q Consensus 226 ~~~~f~dI~G~d---~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~ 299 (582)
+..+|++++|.+ ++.+.+...+. . ..+++++|+||||||||++|++++.++ +.+++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 457899999833 44444443332 1 135689999999999999999999876 47899999988
Q ss_pred HHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCe-EEEEecCc
Q 007989 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~v-iVIaaTN~ 378 (582)
+...+... ++. -..+++|+|||+|.+.. ....+..+..++... .....+ +|+++++.
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~---~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRV---AEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHH---HHHCSCEEEEEESSC
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHH---HHcCCCeEEEEcCCC
Confidence 76543211 111 13467999999999832 112233444444432 222334 55555444
Q ss_pred cc---cccccccCCCCcc--ceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 379 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 379 ~~---~LD~aLlrpgRFd--r~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
++ .+++++.+ ||. ..+.+++|+.+++.++++.++...... ++..++.++..++| +.+++.++++.+...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 44 45678888 886 789999999999999999887643322 23347788899988 99999999999999886
Q ss_pred HhCCCccCHHHHHHHHH
Q 007989 453 RRGKAAISSKEIDDSID 469 (582)
Q Consensus 453 r~~~~~It~~dl~~A~~ 469 (582)
.++ ..|+.+++++++.
T Consensus 226 ~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT-CCCCHHHHHHHHT
T ss_pred HhC-CCCcHHHHHHHhh
Confidence 655 4699999998863
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=1.9e-18 Score=181.61 Aligned_cols=213 Identities=24% Similarity=0.332 Sum_probs=158.1
Q ss_pred cccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEeec
Q 007989 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSISG 297 (582)
Q Consensus 229 ~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----------~~pfi~is~ 297 (582)
..++++|.++.++++.+.+...... ..|++++|+||||||||++|+++++++ +.++++++|
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 3489999999999999888654322 346689999999999999999999987 899999998
Q ss_pred hhHH-H------Hhh-----------hhh-hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHH-HHHH
Q 007989 298 SEFV-E------MFV-----------GVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQL 357 (582)
Q Consensus 298 s~~~-~------~~v-----------G~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~-L~~L 357 (582)
.+.. . ... +.. ...+..+++.+... +++|||||+|.+.... .+.. +..|
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~----------~~~~~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRR----------GGDIVLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHST----------TSHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCC----------CCceeHHHH
Confidence 7643 1 111 111 12234444444333 4499999999995321 1234 5555
Q ss_pred HhhhcCccCCCCeEEEEecCcc---ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC----CCCCccccHHHHHH
Q 007989 358 LTEMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAM 430 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~---~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~lA~ 430 (582)
+... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..++++.++.. ..++++ .++.++.
T Consensus 159 ~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i~~ 229 (384)
T 2qby_B 159 LRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE-ILSYIAA 229 (384)
T ss_dssp HTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHHHH
T ss_pred hcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH-HHHHHHH
Confidence 5533 678999999987 678999988 88889999999999999999987652 333333 3566666
Q ss_pred hCC---CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 431 RTP---GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 431 ~t~---G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
.+. | +.+.+.++|+.|...|. +...|+.+++.+++++..
T Consensus 230 ~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 230 ISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 665 7 88999999999998886 667899999999988764
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.78 E-value=6.9e-18 Score=175.24 Aligned_cols=222 Identities=19% Similarity=0.248 Sum_probs=143.2
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CC------
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VP------ 291 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~-------~p------ 291 (582)
.++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|++++..++ .|
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999877543222 1 11 123699999999999999999999876 23
Q ss_pred --------------------EEEeechhHHHHhhhhhhhHHHHHHHHH---------hhCCCeEEEEeCCCcccccCCCC
Q 007989 292 --------------------FFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDAVGRQRGTG 342 (582)
Q Consensus 292 --------------------fi~is~s~~~~~~vG~~~~~vr~lF~~A---------~~~~P~ILfIDEID~l~~~r~~~ 342 (582)
++.+........+.|.. .+...+... ....+++|||||+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------- 156 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL------- 156 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------
Confidence 22222111111112210 011112111 0113679999999998
Q ss_pred CCCCChHHHHHHHHHHhhh----cCc----cCCCCeEEEEecCccc-cccccccCCCCccceeeccCC-CHHHHHHHHHH
Q 007989 343 IGGGNDEREQTLNQLLTEM----DGF----EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRGRTEILKV 412 (582)
Q Consensus 343 ~~~~~~e~~~~L~~LL~~l----d~~----~~~~~viVIaaTN~~~-~LD~aLlrpgRFdr~I~i~~P-d~~eR~~Il~~ 412 (582)
....+..+.+++++- ... ....++++|++||..+ .++++|++ ||+.++.+++| +.+++.+|++.
T Consensus 157 ----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 157 ----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 334444454544431 100 1123689999999755 89999999 99988999999 67777788865
Q ss_pred Hc-------------------------------CCCCCCccccHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHhCCCc
Q 007989 413 HG-------------------------------SNKKFDADVSLDVIAMRTPG---FSGADLANLLNEAAILAGRRGKAA 458 (582)
Q Consensus 413 ~l-------------------------------~~~~l~~dvdl~~lA~~t~G---~sgadL~~lv~eA~~~A~r~~~~~ 458 (582)
++ ....+++++ ++.++....+ -+.+.+.++++.|...|..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~-~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~ 309 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA-LYDCAALCIALGSDGLRGELTLLRSARALAALEGATA 309 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH-HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 21 122333332 3444433222 267999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcC
Q 007989 459 ISSKEIDDSIDRIVAG 474 (582)
Q Consensus 459 It~~dl~~A~~~v~~g 474 (582)
|+.+|+.+|+..++..
T Consensus 310 v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 310 VGRDHLKRVATMALSH 325 (350)
T ss_dssp CCHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.78 E-value=7.3e-18 Score=163.09 Aligned_cols=208 Identities=19% Similarity=0.278 Sum_probs=151.1
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 291 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p-------- 291 (582)
.+.++..+.+|++++|.+++++.+.+.+..- +.|+.++|+||||||||+++++++++.+..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4455667778999999999999988887632 234579999999999999999999877432
Q ss_pred ----------------EEEeechhHHHHhhhhhhhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHH
Q 007989 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (582)
Q Consensus 292 ----------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~ 351 (582)
++.++... ......++.+++.+. ...|.+|+|||+|.+ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~--- 140 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SR--- 140 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CH---
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cH---
Confidence 22222211 012233455555442 235789999999998 22
Q ss_pred HHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHH
Q 007989 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (582)
Q Consensus 352 ~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~ 430 (582)
..++.|+..++. ...++++|++||.++.+++++.+ |+ ..+.+++|+.++..++++.++...... ++..++.++.
T Consensus 141 ~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 141 HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 244555555553 24578899999999999999988 76 589999999999999999887544322 2334778899
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.+.| +++++.++++.|...+ ...|+.+++++++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 9988 9999999999886433 3489999998875
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=2.9e-18 Score=177.83 Aligned_cols=217 Identities=17% Similarity=0.177 Sum_probs=151.5
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH--HHhh
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--EMFV 305 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~--~~~v 305 (582)
-.+++++|++++++.+...+.. .+++||+||||||||++|+++|+.++.+++.++|.... ..+.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3578899999999887766542 23799999999999999999999999999999884211 1122
Q ss_pred hhhhhH-HHHHHHHHhhCC---CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc----C--ccCCCCeEEEEe
Q 007989 306 GVGASR-VRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G--FEGNTGIIVIAA 375 (582)
Q Consensus 306 G~~~~~-vr~lF~~A~~~~---P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld----~--~~~~~~viVIaa 375 (582)
|...-. ....|. .... .+||||||+|.+ +...+..+.+.+++-. + ...+..++||+|
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 211000 000000 0111 379999999998 3334444444444311 1 122446889999
Q ss_pred cCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC------------------------CCccccHH
Q 007989 376 TNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK------------------------FDADVSLD 426 (582)
Q Consensus 376 TN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~------------------------l~~dvdl~ 426 (582)
+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... ++++ .++
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~ 233 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES-LEK 233 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-HHH
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-HHH
Confidence 99654 38999999 9998899999999999999998875432 1111 133
Q ss_pred HHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 007989 427 VIAMR-------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 427 ~lA~~-------------------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g 474 (582)
.++.. ..|.|.+.+.++++.|...|..+++..|+.+|+.+++..++..
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 33321 1256899999999999999999999999999999999988754
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=3.2e-18 Score=177.78 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=153.3
Q ss_pred ccccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC------C
Q 007989 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------V 290 (582)
Q Consensus 217 ~~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~------~ 290 (582)
....+.+++.+.+|++++|.+++++.+...+. .. ..+ ++||+||||||||++|+++|++++ .
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~~--------~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---SA--------NLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---CT--------TCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---cC--------CCC-EEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 33467778888999999999999987776653 11 122 499999999999999999998853 4
Q ss_pred CEEEeechhHHHHhhhhhhhHHHHHHHHHh----------------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHH
Q 007989 291 PFFSISGSEFVEMFVGVGASRVRDLFKKAK----------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (582)
Q Consensus 291 pfi~is~s~~~~~~vG~~~~~vr~lF~~A~----------------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (582)
.++.+++++... ...+++.+.... ...+.||||||+|.+. ...+
T Consensus 91 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~--- 150 (353)
T 1sxj_D 91 RILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQ--- 150 (353)
T ss_dssp SEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHH---
T ss_pred ceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHH---
Confidence 688888766321 111222211111 1245799999999982 2333
Q ss_pred HHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCC--CCccccHHHHHHhC
Q 007989 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRT 432 (582)
Q Consensus 355 ~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~--l~~dvdl~~lA~~t 432 (582)
+.|+..++.. .....+|.++|.++.+++++.+ |+. .+.+++|+.++..++++..+.... +++ ..++.++..+
T Consensus 151 ~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~l~~l~~~~ 224 (353)
T 1sxj_D 151 SALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDD-GVLERILDIS 224 (353)
T ss_dssp HHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCH-HHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHc
Confidence 4444444432 2356677788999999999999 886 889999999999999988775443 333 3478889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKA-AISSKEIDDSID 469 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~-~It~~dl~~A~~ 469 (582)
.| +.+.+.++++.+...+.+.+.. .|+.+++.+++.
T Consensus 225 ~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 225 AG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp SS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 88 8999999999888877665544 799999988764
No 54
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=2.6e-17 Score=171.89 Aligned_cols=221 Identities=23% Similarity=0.319 Sum_probs=161.7
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.-...+|++++|.+.+++.+...+..-+.+ ...+.+++|+||||||||+||+++|++.++++...+++.+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3344568999999999888887776543211 234568999999999999999999999999998887754422
Q ss_pred HhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc-------Ccc------CCCC
Q 007989 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-------GFE------GNTG 369 (582)
Q Consensus 303 ~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld-------~~~------~~~~ 369 (582)
...+..++.. ...++|+||||+|.+. ...+..+...+.... +.. .-..
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1223333332 2345799999999983 222333333322110 000 0124
Q ss_pred eEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 370 viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
+.++++|+.+..|++++++ ||...+.+++|+.+++.++++...+..... ++..+..++.++.| +++++.++++.+.
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~ 227 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVR 227 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 6788899999999999999 998889999999999999999876544333 22337889999998 8999999999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHH
Q 007989 449 ILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 449 ~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
..|..++...|+.++++++++...
T Consensus 228 ~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 228 DMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHcCCCCcCHHHHHHHHHHhC
Confidence 999888888999999999998753
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.76 E-value=5.2e-18 Score=173.25 Aligned_cols=206 Identities=23% Similarity=0.243 Sum_probs=151.8
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEE
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~ 294 (582)
.|.+++.+.+|++++|.+++++.+.+.+.. ...| ++||+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 466778888999999999999987766532 1223 49999999999999999999986 456888
Q ss_pred eechhHHHHhhhhhhhHHHHHHHHHh------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCC
Q 007989 295 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (582)
Q Consensus 295 is~s~~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~ 368 (582)
+++++... ...+++.+.... ...+.+|+|||+|.+. . ...+.|+..++. ...
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~---~~~~~L~~~le~--~~~ 131 (319)
T 2chq_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------A---DAQAALRRTMEM--YSK 131 (319)
T ss_dssp EETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------H---HHHHTTGGGTSS--SSS
T ss_pred EeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------H---HHHHHHHHHHHh--cCC
Confidence 88876422 112222332221 2457899999999982 1 245566666664 245
Q ss_pred CeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 007989 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (582)
Q Consensus 369 ~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA 447 (582)
++++|++||.++.+++++.+ |+. .+.+++|+.+++.++++.++...... ++..++.++..+.| +.+.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 68899999999999999999 886 89999999999999999887665443 23347788888888 888888888776
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 007989 448 AILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 448 ~~~A~r~~~~~It~~dl~~A~ 468 (582)
+.. ...|+.+++.+++
T Consensus 208 ~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 208 AAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHS-----SSCBCHHHHHHHT
T ss_pred HHc-----CCCCCHHHHHHHH
Confidence 532 3468888887654
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=2.4e-18 Score=161.12 Aligned_cols=160 Identities=24% Similarity=0.413 Sum_probs=119.1
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+.+|++++|.++..+.+.+.+. . ..+++++|+||||||||++|++++.++ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 35679999999998887766543 2 235689999999999999999999986 7899999
Q ss_pred echhHHH--HhhhhhhhHHHHHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 296 SGSEFVE--MFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 296 s~s~~~~--~~vG~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
++.++.. .+.+.....++.+++.+. ...|++|+|||+|.+...+.. .........+..++. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cCCeEE
Confidence 9988763 345555667778887664 456889999999999654321 112223344444443 346788
Q ss_pred EEecCccc-----cccccccCCCCccceeeccCCCHHHHHHHH
Q 007989 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (582)
Q Consensus 373 IaaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il 410 (582)
|++||.++ .+++++.+ ||+ .+.+++|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 99998876 68999999 998 6999999999998875
No 57
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.75 E-value=7.3e-18 Score=178.32 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=142.5
Q ss_pred cccccchHHHHHHHHHHHH-hcCchhh-----------------hhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 007989 231 DDVAGVDEAKQDFMEVVEF-LKKPERF-----------------TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~-l~~p~~~-----------------~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf 292 (582)
++|+|++++|+.+...+.. ++..... ..-....+.++||+||||||||++|+++|..++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987732 1111100 001234566899999999999999999999999999
Q ss_pred EEeechhHH-HHhhhhh-hhHHHHHHHHHh----hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc-
Q 007989 293 FSISGSEFV-EMFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE- 365 (582)
Q Consensus 293 i~is~s~~~-~~~vG~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~- 365 (582)
+.++|..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+...+..++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 334555555432 235789999999999766433221122222335666666666431
Q ss_pred ------------------CCCCeEEEEecCcc-----------------------------------------ccccccc
Q 007989 366 ------------------GNTGIIVIAATNRA-----------------------------------------DILDSAL 386 (582)
Q Consensus 366 ------------------~~~~viVIaaTN~~-----------------------------------------~~LD~aL 386 (582)
...++++|+++|.. ..+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456888887721 1245666
Q ss_pred cCCCCccceeeccCCCHHHHHHHHHH-----------Hc--CC--CCCCccccHHHHHHh-CC-CCcHHHHHHHHHHHHH
Q 007989 387 LRPGRFDRQVTVDVPDIRGRTEILKV-----------HG--SN--KKFDADVSLDVIAMR-TP-GFSGADLANLLNEAAI 449 (582)
Q Consensus 387 lrpgRFdr~I~i~~Pd~~eR~~Il~~-----------~l--~~--~~l~~dvdl~~lA~~-t~-G~sgadL~~lv~eA~~ 449 (582)
++ ||+..+.+++++.++..+|+.. .+ .+ ..++++ .++.++.. ++ ..+.++|.++++.+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 66 8888899999999999988862 11 11 112222 25556555 32 2388999999999988
Q ss_pred HHHHhCC------CccCHHHHHHH
Q 007989 450 LAGRRGK------AAISSKEIDDS 467 (582)
Q Consensus 450 ~A~r~~~------~~It~~dl~~A 467 (582)
.+..+.. ..|+.++++++
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 338 DIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHhhccCCCCCEEEEeHHHhcCC
Confidence 7655421 25787777654
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=8.9e-18 Score=175.39 Aligned_cols=223 Identities=17% Similarity=0.260 Sum_probs=160.2
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEeechhH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEF 300 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~------~~pfi~is~s~~ 300 (582)
...+++++|.++.++.+.+.+..... ...+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34568999999999888776643211 2345689999999999999999999988 899999998754
Q ss_pred HH------Hhh----------hhhhh-HHHHHHHHHhhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc
Q 007989 301 VE------MFV----------GVGAS-RVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (582)
Q Consensus 301 ~~------~~v----------G~~~~-~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld 362 (582)
.. .+. +.... ....+++..... .|++|+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 22 110 11112 233444444433 389999999999853321 135566666665
Q ss_pred CccCCCCeEEEEecCcc---ccccccccCCCCcc-ceeeccCCCHHHHHHHHHHHcCC----CCCCccccHHHHHHhCC-
Q 007989 363 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP- 433 (582)
Q Consensus 363 ~~~~~~~viVIaaTN~~---~~LD~aLlrpgRFd-r~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~lA~~t~- 433 (582)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+.++ .++.++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHH
Confidence 43 34578889999876 467888888 775 48999999999999999886542 233333 3566666665
Q ss_pred --CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 434 --GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 434 --G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
| +++.+.++|+.|...|..++...|+.+++.+|+....
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 7 8999999999999999888888999999999988764
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=1.3e-17 Score=191.95 Aligned_cols=222 Identities=21% Similarity=0.328 Sum_probs=163.3
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEe
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~i 295 (582)
.+-+|++++|.++.++.+.+.+. . ..+.++||+||||||||++|+++|.++ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 45689999999998887766553 1 234589999999999999999999976 6678888
Q ss_pred echhHH--HHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 296 s~s~~~--~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
+++.+. ..+.|....+++.+|+.+....++||||||+|.+.+.++. ........+.|...+ ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~-----~~~~~~~~~~L~~~l----~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA-----SGGQVDAANLIKPLL----SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS-----SSCHHHHHHHHSSCS----SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC-----CcchHHHHHHHHHHH----hCCCeEEE
Confidence 887776 3567778889999999998888899999999999765432 111222333333323 34678999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCC------CCCCccccHHHHHHh-----CCCCcH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------KKFDADVSLDVIAMR-----TPGFSG 437 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~lA~~-----t~G~sg 437 (582)
++||.++ .+|++|.| ||+ .+.++.|+.++|.+|++.+... ..+.++ .+..++.. ...+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9999765 46899999 998 7999999999999999876532 233332 24444443 333567
Q ss_pred HHHHHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHH
Q 007989 438 ADLANLLNEAAILAGR----RGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 438 adL~~lv~eA~~~A~r----~~~~~It~~dl~~A~~~v~ 472 (582)
..+..++++|+..+.. .+...|+.+|+.+++.+..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 7888999999877655 3457899999999998865
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=6.5e-17 Score=169.70 Aligned_cols=219 Identities=15% Similarity=0.172 Sum_probs=158.7
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc--eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHH
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pk--gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~ 301 (582)
..+++++|.++..+.+.+.+...... ..+. .++|+||||||||++++++++++ +.++++++|....
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 34589999999999998887653211 2233 79999999999999999999988 6789999976533
Q ss_pred H------Hhh----------hhhhhHHH-HHHHHHh-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC
Q 007989 302 E------MFV----------GVGASRVR-DLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (582)
Q Consensus 302 ~------~~v----------G~~~~~vr-~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~ 363 (582)
. ... +.....+. .+.+... ...|.+|+|||+|.+ +. ..+..|+..++.
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~---~~~~~L~~~~~~ 151 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------AP---DILSTFIRLGQE 151 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CH---HHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------ch---HHHHHHHHHHHh
Confidence 1 111 11111222 2222222 345899999999998 22 345555555544
Q ss_pred ccC--CCCeEEEEecCcc---ccccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCC----CCCCccccHHHHHHhC-
Q 007989 364 FEG--NTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRT- 432 (582)
Q Consensus 364 ~~~--~~~viVIaaTN~~---~~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dvdl~~lA~~t- 432 (582)
... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..++ +..++.++..+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~~ 228 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADITG 228 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC-HHHHHHHHHHHS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHh
Confidence 322 2478899999887 677888877 8875 7999999999999999887643 2333 33467788777
Q ss_pred --------CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 433 --------PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 433 --------~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
.| +++.+.++++.|...|..++...|+.+++.+++....
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 67 8999999999999999888889999999999988764
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2e-17 Score=169.11 Aligned_cols=205 Identities=19% Similarity=0.251 Sum_probs=138.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-----
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----- 302 (582)
++++|++++++.+...+......-. ...+++.++||+||||||||++|+++|+.+ +.|++.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999999988876421100 011233479999999999999999999987 66899999987643
Q ss_pred Hhhhhhh-----hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc------CCCCeE
Q 007989 303 MFVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNTGII 371 (582)
Q Consensus 303 ~~vG~~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~------~~~~vi 371 (582)
.+.|... .....+.+.......++|||||+|.+ +...+..+.++++.-.-.. .-.+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 2222110 00012223333445589999999998 3344444444444321000 113678
Q ss_pred EEEecCc--------------------------cccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-------C
Q 007989 372 VIAATNR--------------------------ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------K 418 (582)
Q Consensus 372 VIaaTN~--------------------------~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-------~ 418 (582)
+|+|||. ...++++|++ ||+..+.+.+|+.+++.+|++.++... .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 5578899998 999999999999999999998876432 1
Q ss_pred CC---ccccHHHHHHh-C--CCCcHHHHHHHHHHHHHHHH
Q 007989 419 FD---ADVSLDVIAMR-T--PGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 419 l~---~dvdl~~lA~~-t--~G~sgadL~~lv~eA~~~A~ 452 (582)
.. .+..++.++.. | +| +.++|.++++.+...+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~g-n~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVF-GARPLRRVIQRELETPL 279 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTT-BTTTHHHHHHHHTHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccC-CchhHHHHHHHHHHHHH
Confidence 11 12235566654 4 44 99999999999887653
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=1.9e-17 Score=180.89 Aligned_cols=208 Identities=22% Similarity=0.345 Sum_probs=143.8
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (582)
...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|... +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34566899999999999988777653 123489999999999999999999986 88899
Q ss_pred EeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 294 ~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
.++++ ..+.|....+++.+|+.+....|+||||| + . ....+.|+..++ ...+.+|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~---~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------A---IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------c---hhHHHHHHHhhc----CCCEEEE
Confidence 99987 66778888899999999998889999999 1 0 113344555443 4579999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC----CCC-ccccHHHHHHhC-----CCCcHH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFD-ADVSLDVIAMRT-----PGFSGA 438 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~----~l~-~dvdl~~lA~~t-----~G~sga 438 (582)
++||.++ .+|+++.| ||+ .+.|+.|+.+++.+|++.++... ... .+..+..++..+ ..+.+.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCc
Confidence 9999987 68999999 998 59999999999999999877652 211 222244444433 234566
Q ss_pred HHHHHHHHHHHHHHHhCC-CccCHHHHHHHHHHH
Q 007989 439 DLANLLNEAAILAGRRGK-AAISSKEIDDSIDRI 471 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~~-~~It~~dl~~A~~~v 471 (582)
....++.+|+..+..+.. ...+..+++..+.++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 788888888876655543 233445555555544
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1e-16 Score=164.29 Aligned_cols=207 Identities=22% Similarity=0.265 Sum_probs=148.0
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEE
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~-----~pfi 293 (582)
..+.+++.+.+|++++|++++++.+.+.+..- +.| ++||+||||||||++|+++++++. .+++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 45667788899999999999999988877531 222 599999999999999999999863 3577
Q ss_pred EeechhHHHHhhhhhhhHHHHHHHHHh------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 294 SISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 294 ~is~s~~~~~~vG~~~~~vr~lF~~A~------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
.+++++.... ..++..+.... ...+++|+|||+|.+ ..+. .+.|+..++. ..
T Consensus 81 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~---~~~L~~~le~--~~ 138 (327)
T 1iqp_A 81 ELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDA---QQALRRTMEM--FS 138 (327)
T ss_dssp EEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHH---HHHHHHHHHH--TT
T ss_pred EeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHH---HHHHHHHHHh--cC
Confidence 8887654321 11222222211 145789999999998 2233 3444544443 23
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (582)
.++++|.++|.++.+++++.+ |+. .+.+++|+.++..++++..+...... ++..++.++..+.| +.+.+.++++.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 567888899999999999998 886 78999999999999999887655432 23346788888888 88888888876
Q ss_pred HHHHHHHhCCCccCHHHHHHHH
Q 007989 447 AAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 447 A~~~A~r~~~~~It~~dl~~A~ 468 (582)
+... ...|+.+++.+++
T Consensus 215 ~~~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 215 AAAL-----DKKITDENVFMVA 231 (327)
T ss_dssp HHTT-----CSEECHHHHHHHT
T ss_pred HHhc-----CCCCCHHHHHHHH
Confidence 6532 2357777666543
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=9.1e-17 Score=164.29 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=150.5
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEE
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~ 294 (582)
.+.++..+.+|++++|.+++++.+.+.+.. .+.|. +||+||||+|||++|+++++++ +.+++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 345566778999999999999988887642 23344 9999999999999999999986 456788
Q ss_pred eechhHHHHhhhhhhhHHHHHHHHHh-------hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 295 ISGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 295 is~s~~~~~~vG~~~~~vr~lF~~A~-------~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
+++++.. +...++++++... ...+++|+|||+|.+. ... .+.|+..++. ..
T Consensus 78 ~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~---~~~L~~~le~--~~ 135 (323)
T 1sxj_B 78 LNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGA---QQALRRTMEL--YS 135 (323)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHH---HHTTHHHHHH--TT
T ss_pred ecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHH---HHHHHHHHhc--cC
Confidence 8876521 1234555555543 3347899999999982 222 3344444442 23
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (582)
.++++|.+||.++.+++++.+ |+. .+.+++|+.++..++++.++...... ++..++.++..+.| +.+.+.++++.
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 567888888999999999998 775 89999999999999998876543322 22346788888887 88888888877
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH
Q 007989 447 AAILAGRRGKAAISSKEIDDSID 469 (582)
Q Consensus 447 A~~~A~r~~~~~It~~dl~~A~~ 469 (582)
+.... ..|+.+++.+++.
T Consensus 212 ~~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 212 TVAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHH-----SSBCHHHHHHHHT
T ss_pred HHhcC-----CCcCHHHHHHHHC
Confidence 66321 4689988887764
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.1e-16 Score=167.54 Aligned_cols=206 Identities=19% Similarity=0.286 Sum_probs=150.9
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------
Q 007989 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (582)
Q Consensus 222 ~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---------- 291 (582)
.+++.+.+|++++|.+++++.+.+.+.. .+.++.+||+||||||||++|+++|+.+++.
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 4556677899999999999998887753 2345679999999999999999999987542
Q ss_pred --------------EEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 292 --------------fi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
++.++++. ..+...++++++.+.. ..+.||+|||+|.+ +. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~---~~ 135 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SR---HS 135 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CH---HH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cH---HH
Confidence 22222211 0123456777776642 34689999999998 22 24
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCC-ccccHHHHHHhC
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~-~dvdl~~lA~~t 432 (582)
.+.|+..++. ...++++|.+|+.++.+++.+.+ |+ ..+.+++|+.++..++++.+++..+.. ++..++.++..+
T Consensus 136 ~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 4566666653 34578888889988999999998 77 589999999999999999877544332 222367888999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 433 ~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.| +.+++.++++.+...+ ...|+.+++.+++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 88 9999999998886543 3568888876653
No 66
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.72 E-value=8.3e-18 Score=169.02 Aligned_cols=205 Identities=22% Similarity=0.321 Sum_probs=128.1
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHHHHh
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMF 304 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~~~~ 304 (582)
.+|++++|.+++++.+.+.+..... .+.++||+||||||||++|++++.... .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999999999888876533 235899999999999999999999874 799999998864322
Q ss_pred -----hhhhhh-------HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC------ccC
Q 007989 305 -----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG------FEG 366 (582)
Q Consensus 305 -----vG~~~~-------~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~------~~~ 366 (582)
.|.... .....|+.+ .+++|||||+|.+ +.+.+..+.++++.-.- ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCcccc
Confidence 121100 011233333 3469999999998 33445555555553210 011
Q ss_pred CCCeEEEEecCcc-c------cccccccCCCCccceeeccCCCHHHHHH----HHHHHc----CCC------CCCccccH
Q 007989 367 NTGIIVIAATNRA-D------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNK------KFDADVSL 425 (582)
Q Consensus 367 ~~~viVIaaTN~~-~------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~----Il~~~l----~~~------~l~~dvdl 425 (582)
..++.+|+|||.+ + .++++|++ ||+ .+.+.+|+..+|.+ +++.++ ... .++++ .+
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~-a~ 214 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER-AR 214 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH-HH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH-HH
Confidence 2467899999974 2 35677777 776 36777788877644 323222 111 22332 24
Q ss_pred HHHH-HhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007989 426 DVIA-MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (582)
Q Consensus 426 ~~lA-~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl 464 (582)
+.+. ..|+| +.++|.++++.++..+ ....|+.+|+
T Consensus 215 ~~L~~~~~~g-n~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 215 ETLLNYRWPG-NIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHSCCTT-HHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHhCCCCC-CHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 4454 45787 9999999999998776 2345666555
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=173.14 Aligned_cols=214 Identities=9% Similarity=0.084 Sum_probs=147.3
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEeechhHHH
Q 007989 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE 302 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~is~s~~~~ 302 (582)
+.|.++..+.+...+.... ....|.+++|+||||||||+++++++.++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i--------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 6677777777766665422 23457799999999999999999999987 35688999865432
Q ss_pred ----------Hhhh------hhhhHHHHHHHHH--hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc
Q 007989 303 ----------MFVG------VGASRVRDLFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (582)
Q Consensus 303 ----------~~vG------~~~~~vr~lF~~A--~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~ 364 (582)
.+.| .....++..|... ....++||+|||+|.+. .+..+..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 2222 2345677788765 35678999999999994 1346777776433
Q ss_pred cCCCCeEEEEecCcccc----ccccccCCCCcc-ceeeccCCCHHHHHHHHHHHcCCCCC--------------------
Q 007989 365 EGNTGIIVIAATNRADI----LDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKKF-------------------- 419 (582)
Q Consensus 365 ~~~~~viVIaaTN~~~~----LD~aLlrpgRFd-r~I~i~~Pd~~eR~~Il~~~l~~~~l-------------------- 419 (582)
..+.+++||+.+|..+. |++++.+ ||. +.|.|++++.++..+|++..+....-
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 23567899999988653 5666677 887 58999999999999999987654210
Q ss_pred ----------------CccccHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHH
Q 007989 420 ----------------DADVSLDVIAM---RTPGFSGADLANLLNEAAILAGRR---------GKAAISSKEIDDSIDRI 471 (582)
Q Consensus 420 ----------------~~dvdl~~lA~---~t~G~sgadL~~lv~eA~~~A~r~---------~~~~It~~dl~~A~~~v 471 (582)
-++..++.+|+ ...| ..+-.-++|+.|...|.++ ++..||.+++.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 01222566666 3456 7777778899998888653 23345555555555444
Q ss_pred H
Q 007989 472 V 472 (582)
Q Consensus 472 ~ 472 (582)
+
T Consensus 316 ~ 316 (318)
T 3te6_A 316 I 316 (318)
T ss_dssp H
T ss_pred h
Confidence 3
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.71 E-value=1.5e-17 Score=171.81 Aligned_cols=203 Identities=24% Similarity=0.379 Sum_probs=134.1
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh---
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF--- 304 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~--- 304 (582)
++++|.+++.+.+.+.+..... .+.++||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4689999999999988877542 24589999999999999999999854 6899999998765422
Q ss_pred --hhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc------cCCCC
Q 007989 305 --VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGNTG 369 (582)
Q Consensus 305 --vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~------~~~~~ 369 (582)
.|... ......|+.+. .++|||||||.+ ....+..+..++++..-. ....+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 22110 11234566664 359999999999 334444454555432100 11246
Q ss_pred eEEEEecCcc--c-----cccccccCCCCccceeeccCCCHHHHHH----HHHHHcCC---------CCCCccccHHHHH
Q 007989 370 IIVIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN---------KKFDADVSLDVIA 429 (582)
Q Consensus 370 viVIaaTN~~--~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~----Il~~~l~~---------~~l~~dvdl~~lA 429 (582)
+.||+|||.+ + .+++.|.. ||. .+.+.+|+..+|.+ ++++++.. ..+++++ ++.+.
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a-~~~L~ 213 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQA-MDLLI 213 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHH-HHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHH-HHHHH
Confidence 8999999974 1 24455555 665 67778888777654 44443321 1233332 44454
Q ss_pred H-hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007989 430 M-RTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (582)
Q Consensus 430 ~-~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~ 465 (582)
. .|+| +.++|.++++.|+..+ ....|+.+|+.
T Consensus 214 ~~~wpG-nvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 214 HYDWPG-NIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp HCCCSS-HHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred cCCCCC-CHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 4 4688 9999999999998766 34567777764
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1.8e-16 Score=185.03 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=137.6
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (582)
..+-+|++++|.++..+.+.+++.. ..+.++||+||||||||++|+++|.++ +.++++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3467899999999888877766531 224579999999999999999999987 889999
Q ss_pred eechhHH--HHhhhhhhhHHHHHHHHHhhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 007989 295 ISGSEFV--EMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (582)
Q Consensus 295 is~s~~~--~~~vG~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~vi 371 (582)
++++.+. ..+.|....+++.+|+.+... .|+||||||+|.+.+.+.. .+..+....+..++. ...+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------RGELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------TTCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------CCCeE
Confidence 9999887 467788888999999999875 6899999999999654432 111222333444443 35678
Q ss_pred EEEecCccc----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCC------CCCCccccHHHHHHh-----CCCCc
Q 007989 372 VIAATNRAD----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------KKFDADVSLDVIAMR-----TPGFS 436 (582)
Q Consensus 372 VIaaTN~~~----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~------~~l~~dvdl~~lA~~-----t~G~s 436 (582)
+|++||.++ .+|++|.| ||+. +.++.|+.+++.+|++.++.. ..+.++ .+..++.. +..|.
T Consensus 302 ~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRL 377 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCT
T ss_pred EEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccC
Confidence 999999875 37999999 9985 999999999999999866542 222222 23444432 45677
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007989 437 GADLANLLNEAAILAGRR 454 (582)
Q Consensus 437 gadL~~lv~eA~~~A~r~ 454 (582)
+.....++.+|+..+..+
T Consensus 378 p~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 888999999998777654
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=1.4e-16 Score=183.49 Aligned_cols=192 Identities=22% Similarity=0.329 Sum_probs=137.9
Q ss_pred cCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 007989 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi 293 (582)
...+-+|++++|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +++++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 34556899999999999988877642 234489999999999999999999986 88999
Q ss_pred EeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEE
Q 007989 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (582)
Q Consensus 294 ~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVI 373 (582)
.+++ ...|.|....+++.+|+.+....|+||||| + . ....+.|+..++ ...+.+|
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~---~~~~~~L~~~l~----~~~v~~I 295 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------A---IDASNILKPSLA----RGELQCI 295 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------c---hhHHHHHHHHHh----cCCEEEE
Confidence 8888 456778888899999999999999999999 1 0 113345555444 5679999
Q ss_pred EecCccc-----cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCC----C-ccccHHHHHHh-----CCCCcHH
Q 007989 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF----D-ADVSLDVIAMR-----TPGFSGA 438 (582)
Q Consensus 374 aaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l----~-~dvdl~~lA~~-----t~G~sga 438 (582)
++||..+ .+|+++.| ||+ .|.|+.|+.+++.+|++.+...... . .+..+..++.. +.++.+.
T Consensus 296 ~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~ 372 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred eCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCc
Confidence 9999988 69999999 995 6999999999999999987665321 1 12223333332 4467788
Q ss_pred HHHHHHHHHHHHHHHhC
Q 007989 439 DLANLLNEAAILAGRRG 455 (582)
Q Consensus 439 dL~~lv~eA~~~A~r~~ 455 (582)
....++.+|+..+..+.
T Consensus 373 ~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 373 KAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88899999987776553
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=3.2e-16 Score=180.57 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=138.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCc-eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVG 306 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pk-gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG 306 (582)
++++|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|..+ +.||++++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5799999999999998876542211 011233 69999999999999999999987 789999999999876544
Q ss_pred hhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc------cCCCCeEEEEecCccc
Q 007989 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGNTGIIVIAATNRAD 380 (582)
Q Consensus 307 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~------~~~~~viVIaaTN~~~ 380 (582)
. ...+++..+...++||||||||.+ +...+..+.+++++-.-. ....++++|+|||.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 3 122334445566789999999988 444555555555541100 1234689999999644
Q ss_pred c------------ccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC-------CCC---ccccHHHHHHh---CCCC
Q 007989 381 I------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFD---ADVSLDVIAMR---TPGF 435 (582)
Q Consensus 381 ~------------LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~-------~l~---~dvdl~~lA~~---t~G~ 435 (582)
. ++|+|++ ||+..|.+++|+.+++.+|++.++... ... ++..++.++.. ++ +
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~-~ 708 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLE-Y 708 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTT-T
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCC-C
Confidence 3 7888888 999999999999999999998765431 111 12225556543 44 4
Q ss_pred cHHHHHHHHHHHHHHH
Q 007989 436 SGADLANLLNEAAILA 451 (582)
Q Consensus 436 sgadL~~lv~eA~~~A 451 (582)
+.++|+++++.+...+
T Consensus 709 ~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 709 GARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTTHHHHHHHHTHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 8899999998876544
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.67 E-value=1.1e-16 Score=149.86 Aligned_cols=154 Identities=25% Similarity=0.431 Sum_probs=112.6
Q ss_pred CCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEE
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----------~~pfi~ 294 (582)
..+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|++++.++ +.+++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HhccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 345689999999998777666552 2 235589999999999999999999986 788999
Q ss_pred eechhHHHH--hhhhhhhHHHHHHHHHhhC-CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeE
Q 007989 295 ISGSEFVEM--FVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (582)
Q Consensus 295 is~s~~~~~--~vG~~~~~vr~lF~~A~~~-~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~vi 371 (582)
+++..+... +.+.....++.++..+... .|++|||||+|.+...+.. .....+....+..++. ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~-------~~~~~ 154 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLA-------RGELR 154 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHH-------TTCSC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHh-------cCCee
Confidence 998877642 3455556677788777654 6889999999999654431 1111223333433332 35688
Q ss_pred EEEecCccc-----cccccccCCCCccceeeccCCC
Q 007989 372 VIAATNRAD-----ILDSALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 372 VIaaTN~~~-----~LD~aLlrpgRFdr~I~i~~Pd 402 (582)
+|++||.++ .+|+++.+ ||+ .+.+++|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 999999876 58999999 998 48998886
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=1.3e-16 Score=175.33 Aligned_cols=209 Identities=19% Similarity=0.188 Sum_probs=133.6
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechh-HHHHhhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVEMFVGV 307 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~-~~~~~vG~ 307 (582)
..|+|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- -.+.++|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4588999988776654431 23799999999999999999999884 4666666531 11222221
Q ss_pred --hhh-HHHHHHHHHhhC---CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcC-------cc-CCCCeEEE
Q 007989 308 --GAS-RVRDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-------FE-GNTGIIVI 373 (582)
Q Consensus 308 --~~~-~vr~lF~~A~~~---~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~-------~~-~~~~viVI 373 (582)
... .-...|..+..+ .++|||||||+.+ +.. +.+.|+..|+. .. ..+..++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~---~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GPA---ILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC-----------CHH---HHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cHH---HHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 111 012233333222 4689999999876 233 44455555532 11 11122467
Q ss_pred EecCcc-c--cccccccCCCCccceeeccCCCH-HHHHHHHHHHcCC-------------------------CCCCcccc
Q 007989 374 AATNRA-D--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSN-------------------------KKFDADVS 424 (582)
Q Consensus 374 aaTN~~-~--~LD~aLlrpgRFdr~I~i~~Pd~-~eR~~Il~~~l~~-------------------------~~l~~dvd 424 (582)
+|||.+ + ...+++++ ||...+.+++|+. +++.+|++.+... ..+++++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 777753 2 23458999 9988999999987 7788998876431 1122221
Q ss_pred HHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 425 LDVIAMR---------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 425 l~~lA~~---------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
.+.++.. ..|.|.+.+..+++.|...|..+++..|+.+|+. ++..+
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 2333322 3588999999999999999999999999999998 44333
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=4.9e-16 Score=178.87 Aligned_cols=202 Identities=16% Similarity=0.231 Sum_probs=138.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH-------
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------- 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~------- 303 (582)
++++|++++++.+.+.+......-. ...++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887765331100 001233479999999999999999999999999999999998753
Q ss_pred -----hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc------CCCCeEE
Q 007989 304 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNTGIIV 372 (582)
Q Consensus 304 -----~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~------~~~~viV 372 (582)
|+|.... ..+.+..+...++||||||||.+ +.+....+.++++.-.-.. .-.+++|
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~i 601 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEE
Confidence 3333222 22344445566799999999988 3344444444444210000 0146889
Q ss_pred EEecCccc-------------------------cccccccCCCCccceeeccCCCHHHHHHHHHHHcCCC----------
Q 007989 373 IAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---------- 417 (582)
Q Consensus 373 IaaTN~~~-------------------------~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~---------- 417 (582)
|+|||.+. .++|+|++ |||..|.|++|+.+++.+|++.++...
T Consensus 602 I~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 99999743 67888998 999999999999999999998876521
Q ss_pred -CCCccccHHHHHH-hCC-CCcHHHHHHHHHHHHHHH
Q 007989 418 -KFDADVSLDVIAM-RTP-GFSGADLANLLNEAAILA 451 (582)
Q Consensus 418 -~l~~dvdl~~lA~-~t~-G~sgadL~~lv~eA~~~A 451 (582)
.++++ .++.++. .++ .++.++|.++++.+...+
T Consensus 680 ~~~~~~-a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 680 LEVSQE-ARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp EEECHH-HHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred EEeCHH-HHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 12222 2455554 333 346889999888887544
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1e-15 Score=159.70 Aligned_cols=211 Identities=21% Similarity=0.227 Sum_probs=147.2
Q ss_pred ccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEE
Q 007989 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFF 293 (582)
Q Consensus 219 ~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----pfi 293 (582)
..|.+++++.+|++++|++++++.|...+.. .+.|. ++|+||||||||++|+++|+.+.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 4577788889999999999999988877652 23344 999999999999999999998643 356
Q ss_pred EeechhHHHHhhhhhhhHHHHHHHHHhh------CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC
Q 007989 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (582)
Q Consensus 294 ~is~s~~~~~~vG~~~~~vr~lF~~A~~------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~ 367 (582)
.+++++.. +...+++.+..... ..+.|++|||+|.+. ... .+.|+..++.. .
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~---~~~L~~~le~~--~ 138 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAA---QNALRRVIERY--T 138 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHH---HHHHHHHHHHT--T
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHH---HHHHHHHHhcC--C
Confidence 66655421 12334444433321 236899999999982 223 34455555432 3
Q ss_pred CCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC--CCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 007989 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLN 445 (582)
Q Consensus 368 ~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~lA~~t~G~sgadL~~lv~ 445 (582)
....+|.+||.++.+.+++.+ |+. .+.+..++.++..+++...+.. ..+.+ .....++..+.| +.+.+.++++
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHH
Confidence 456777888999999999999 886 7889999999988888887743 33443 336778888777 7777777776
Q ss_pred HHHHHHHHhCCCccCHHHHHHHH
Q 007989 446 EAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 446 eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
.+...+...+...|+.+++.+++
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHhcCCcccccccHHHHHHHh
Confidence 66544432233468988887654
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.9e-15 Score=157.42 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=136.9
Q ss_pred cccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---------
Q 007989 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 290 (582)
Q Consensus 220 ~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~--------- 290 (582)
.|.+++.+.+|++++|++++++.+.+.+. + ..+.|. ++|+||||||||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 57788889999999999999887776551 1 123455 999999999999999999996421
Q ss_pred --------------------CEEEeechhHHHHhhhhhhhHHHHHHHHHh--------------hCCCeEEEEeCCCccc
Q 007989 291 --------------------PFFSISGSEFVEMFVGVGASRVRDLFKKAK--------------ENAPCIVFVDEIDAVG 336 (582)
Q Consensus 291 --------------------pfi~is~s~~~~~~vG~~~~~vr~lF~~A~--------------~~~P~ILfIDEID~l~ 336 (582)
+++.+++++... .....+++.++.+. ...|.||+|||+|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-
Confidence 123333322100 00013455555442 225779999999997
Q ss_pred ccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC
Q 007989 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (582)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~ 416 (582)
+...+ +.|+..++.. ..+..+|.+||.++.+.+++.+ |+ ..+.+++|+.++..++++..+..
T Consensus 147 ----------~~~~~---~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 147 ----------TKDAQ---AALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------CHHHH---HHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------CHHHH---HHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 33333 3444444432 3457888889999999999998 88 68999999999999999987754
Q ss_pred CCCC-c-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 007989 417 KKFD-A-DVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 417 ~~l~-~-dvdl~~lA~~t~G~sgadL~~lv~eA~~~A 451 (582)
..+. + +..++.++..+.| +.+++.++++.+...+
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 4332 2 3447888988888 9999999998887654
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=1.5e-16 Score=178.59 Aligned_cols=223 Identities=20% Similarity=0.208 Sum_probs=140.0
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe----echhHHHH---
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEM--- 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i----s~s~~~~~--- 303 (582)
..|+|++++|+.+.-.+..-. +........+...++||+||||||||++|+++|..++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 468888888776533221100 0000111122233899999999999999999999987665542 22222211
Q ss_pred --hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc------Cc--cCCCCeEEE
Q 007989 304 --FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVI 373 (582)
Q Consensus 304 --~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld------~~--~~~~~viVI 373 (582)
+.|.. ......+..|. .+|+||||||.+ +...+..+.+.+++-. +. ..+.++.||
T Consensus 374 ~~~~g~~-~~~~G~l~~A~---~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEY-YLEAGALVLAD---GGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSC-SEEECHHHHHS---SSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ccccccc-cccCCeeEecC---CCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11110 00112334443 359999999998 3334444444444211 11 113468899
Q ss_pred EecCccc-------------cccccccCCCCccc-eeeccCCCHHHHHHHHHHHcCCCC-------CC------------
Q 007989 374 AATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-------FD------------ 420 (582)
Q Consensus 374 aaTN~~~-------------~LD~aLlrpgRFdr-~I~i~~Pd~~eR~~Il~~~l~~~~-------l~------------ 420 (582)
||||++. .|+++|++ |||. .+..+.|+.+ ...|.++.+.... +.
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999986 89999999 9986 5566777777 7777776654322 11
Q ss_pred -------ccccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 421 -------ADVSLDVIAMR--------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 421 -------~dvdl~~lA~~--------------t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
++...+.+... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|+.-+.
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 11112333332 24579999999999999999999999999999999987543
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=3.8e-15 Score=173.91 Aligned_cols=202 Identities=21% Similarity=0.278 Sum_probs=136.3
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh--
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~-- 304 (582)
+++|+|++++++.+.+.+...+..-. -..++..++||+||||||||++|+++|..+ +.||+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999998876432100 001222489999999999999999999988 7899999999876531
Q ss_pred ---hhh-----hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc---------CC
Q 007989 305 ---VGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 367 (582)
Q Consensus 305 ---vG~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~---------~~ 367 (582)
.|. +......+.+..+...+++|||||||.+ +.+ +++.|+..++.-. .-
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~---~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPD---VFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHH---HHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHH---HHHHHHHHhccCceECCCCCEecc
Confidence 111 1111123344445556789999999987 334 4455555554211 11
Q ss_pred CCeEEEEecCcc--------------------------ccccccccCCCCccceeeccCCCHHHHHHHHHHHcCC-----
Q 007989 368 TGIIVIAATNRA--------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----- 416 (582)
Q Consensus 368 ~~viVIaaTN~~--------------------------~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~----- 416 (582)
.+++||+|||.. ..+.|+|++ ||+..+.+.+|+.++...|++.++..
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367899999972 235667777 99999999999999999999877642
Q ss_pred ----C--CCCccccHHHHHHh-C--CCCcHHHHHHHHHHHHHHHH
Q 007989 417 ----K--KFDADVSLDVIAMR-T--PGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 417 ----~--~l~~dvdl~~lA~~-t--~G~sgadL~~lv~eA~~~A~ 452 (582)
. .++++ .++.|+.. + +| +.++|.++++.+...+.
T Consensus 778 ~~~~~~~~~~~~-a~~~L~~~~~~~~g-n~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 778 AEKRISLELTEA-AKDFLAERGYDPVF-GARPLRRVIQRELETPL 820 (854)
T ss_dssp HTTTCEEEECHH-HHHHHHHHHCBTTT-BTSTHHHHHHHHTHHHH
T ss_pred HhCCceEEECHH-HHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHH
Confidence 1 12222 24555553 4 44 99999999999876653
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=1.1e-15 Score=140.10 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhH
Q 007989 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (582)
Q Consensus 232 dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~ 311 (582)
+++|.+++++++.+.+..... .+.+|||+||||||||++|++++.+.+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 578999999999998876432 234799999999999999999999888 99999999876643
Q ss_pred HHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 312 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
...+|+.+. +++|||||+|.+ ..+.+..+.+++++.. ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455676664 469999999999 3445555555555432 4568899999864
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=5.5e-14 Score=148.67 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=152.9
Q ss_pred CcccccccchHHHHHHHHHH-HHhcCchhhhhhcCCCCceEEE--EcCCCCcHHHHHHHHHHhc---------CCCEEEe
Q 007989 228 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSI 295 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v-~~l~~p~~~~~~g~~~pkgvLL--~GPpGTGKT~LArAlA~e~---------~~pfi~i 295 (582)
...++++|.++..+.+.+.+ ...... ....+..++| +||||+|||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34588999999999998887 654221 0023557999 9999999999999998876 5678888
Q ss_pred echh------HHHHhh---hh-------hhhH-HHHHHHHH-hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 296 SGSE------FVEMFV---GV-------GASR-VRDLFKKA-KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 296 s~s~------~~~~~v---G~-------~~~~-vr~lF~~A-~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
+|.. +...+. +. .... ...+.+.. ....|++|+|||+|.+...+. .....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHH
Confidence 8743 222111 11 1111 22222222 235689999999999843210 012345555
Q ss_pred HhhhcCcc-CC--CCeEEEEecCccc---ccc---ccccCCCCccceeeccCCCHHHHHHHHHHHcCC----CCCCcccc
Q 007989 358 LTEMDGFE-GN--TGIIVIAATNRAD---ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVS 424 (582)
Q Consensus 358 L~~ld~~~-~~--~~viVIaaTN~~~---~LD---~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~----~~l~~dvd 424 (582)
+..++... .. .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++.. ..+ ++..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~-~~~~ 241 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVW-EPRH 241 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC-CHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC-ChHH
Confidence 54444332 12 5788888887655 345 66666 56556999999999999999766532 122 2334
Q ss_pred HHHHHHhCC------CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 007989 425 LDVIAMRTP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (582)
Q Consensus 425 l~~lA~~t~------G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~ 472 (582)
+..++..+. | +++.+.++++.|...|..++...++.+++..++....
T Consensus 242 ~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 242 LELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 677888888 8 8999999999999988888888999999998887654
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.56 E-value=3.7e-15 Score=136.84 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=82.7
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhh
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV 307 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~ 307 (582)
.+++|.+++.+++.+.+..+... +.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~----------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSET----------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC----------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 36899999999999888765432 3479999999999999999999976 78999 999876543
Q ss_pred hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 308 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
......|+.+.. ++|||||||.+ ....+..+.+++ . ....++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l-----------~~~~q~~Ll~~l---~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHL-----------TREQQYHLVQLQ---S--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGS-----------CHHHHHHHHHHH---H--SSSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHC-----------CHHHHHHHHHHH---h--hcCCCEEEEEECCcC
Confidence 345566777744 59999999999 334444444444 2 223467889999863
No 82
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.49 E-value=4.1e-14 Score=150.82 Aligned_cols=211 Identities=19% Similarity=0.315 Sum_probs=139.6
Q ss_pred ccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH---
Q 007989 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (582)
Q Consensus 230 f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~--- 303 (582)
+++++|.++..+++.+.+..+...+ ..+||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 5678899988888888888765443 368999999999999999998765 479999999876542
Q ss_pred --hhhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----CC
Q 007989 304 --FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 368 (582)
Q Consensus 304 --~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~~----~~ 368 (582)
..|... .....+|+.|.++ +||||||+.+ +.+.+..+.++|++-. .... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCc---EEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 222110 1123567777554 9999999999 5566677777776521 1111 23
Q ss_pred CeEEEEecCcc--ccccccccCCCCccc--eeeccCCCHHHHHHH----HHHHc----CCC-----CCCccccHHHHHHh
Q 007989 369 GIIVIAATNRA--DILDSALLRPGRFDR--QVTVDVPDIRGRTEI----LKVHG----SNK-----KFDADVSLDVIAMR 431 (582)
Q Consensus 369 ~viVIaaTN~~--~~LD~aLlrpgRFdr--~I~i~~Pd~~eR~~I----l~~~l----~~~-----~l~~dvdl~~lA~~ 431 (582)
++.+|+|||.. +.+....+|+..|.+ .+.+.+|+..+|.+- +++++ ++. .++++.--......
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 68899999973 122222222222222 567888999888652 22222 111 13333323334577
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 432 t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
|+| |.++|+|+++.|+..+ ....|+.+|+...+
T Consensus 352 wpG-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 352 WYG-NVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp CTT-HHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred CCc-HHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 999 9999999999999876 34689998887543
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.47 E-value=2.8e-13 Score=152.42 Aligned_cols=220 Identities=21% Similarity=0.325 Sum_probs=136.5
Q ss_pred ccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEeechh
Q 007989 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSE 299 (582)
Q Consensus 223 ~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~p---fi~is~s~ 299 (582)
.+.++.+|++++|.+.+++.+...+.. ...++|+||||||||++|+++|+..... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 345667899999999999877766641 1379999999999999999999977432 12221110
Q ss_pred H------------------HHHh--------------------------------------hhhhhhHHHHHHHH-----
Q 007989 300 F------------------VEMF--------------------------------------VGVGASRVRDLFKK----- 318 (582)
Q Consensus 300 ~------------------~~~~--------------------------------------vG~~~~~vr~lF~~----- 318 (582)
. .+.. +.........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 0 0000 00000011112210
Q ss_pred ------------------HhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc----C------------c
Q 007989 319 ------------------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G------------F 364 (582)
Q Consensus 319 ------------------A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld----~------------~ 364 (582)
.....+++|||||+|.+ +.+.+..|.++|++-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 11124569999999998 3455555555555321 1 0
Q ss_pred cCCCCeEEEEecCcc--ccccccccCCCCccc---eeeccC--C-CHHHHHHHHHHHcC-------CCCCCccccHHHHH
Q 007989 365 EGNTGIIVIAATNRA--DILDSALLRPGRFDR---QVTVDV--P-DIRGRTEILKVHGS-------NKKFDADVSLDVIA 429 (582)
Q Consensus 365 ~~~~~viVIaaTN~~--~~LD~aLlrpgRFdr---~I~i~~--P-d~~eR~~Il~~~l~-------~~~l~~dvdl~~lA 429 (582)
....++.||++||+. +.++++|++ ||+. .+.++. + +.+....+++...+ ...++++. +..+.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eA-l~~Li 324 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEA-VEEIV 324 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHH-HHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHH-HHHHH
Confidence 112368899999986 689999999 9962 344422 2 23344555443321 12233332 33333
Q ss_pred ---HhCCCC------cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007989 430 ---MRTPGF------SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (582)
Q Consensus 430 ---~~t~G~------sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~ 470 (582)
.++.|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 344663 79999999999999999999999999999999854
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=7.1e-13 Score=138.22 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=118.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEeechhHHHHhhhhhhhHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~p------------------------fi~is~s~~~~~~vG~~~~~vr~lF~ 317 (582)
+.|+++||+||||+|||++|+++|+.+.++ ++.++..+- -...+...++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 567789999999999999999999987543 222222100 00123345778877
Q ss_pred HHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCcc
Q 007989 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (582)
Q Consensus 318 ~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFd 393 (582)
.+.. ..+.|++|||+|.+. ....|.|+..++. +..++++|.+||.++.+.+++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7643 346899999999992 2356778887774 44578888889999999999999 885
Q ss_pred ceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 007989 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (582)
Q Consensus 394 r~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~ 448 (582)
.+.+++|+.++..++++... .++ +..+..++..+.| +.+.+.++++.+.
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQGDN 209 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTSSHH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhccch
Confidence 79999999999999998876 232 3346778888888 8888888777654
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.45 E-value=7.2e-14 Score=170.64 Aligned_cols=153 Identities=19% Similarity=0.245 Sum_probs=111.4
Q ss_pred CCCcccccccchHHHHHHHHHHHH-hc----------Cchhhhh------hcCC----------CCce--EEEEcCCCCc
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEF-LK----------KPERFTA------IGAR----------IPKG--VLLVGPPGTG 276 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~-l~----------~p~~~~~------~g~~----------~pkg--vLL~GPpGTG 276 (582)
..++|+||.|.+++|+++.+.+.+ ++ .++.|+. .|.. +|+| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 448999999999999999998877 42 2556665 3443 6777 9999999999
Q ss_pred HHHHHHHHHHhc---CCCEEEeechhHH------------HHhhhh----hhhHHHHHHHHHhhCCCeEEEEeCCCcccc
Q 007989 277 KTLLAKAIAGEA---GVPFFSISGSEFV------------EMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 277 KT~LArAlA~e~---~~pfi~is~s~~~------------~~~vG~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 337 (582)
||+||++++.+. +-|.++++..+.. +.+++. +++.++.+|..|+..+||+||+||+|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998866 6677777776544 345556 788899999999999999999999999998
Q ss_pred cCC---CCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcc
Q 007989 338 QRG---TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (582)
Q Consensus 338 ~r~---~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~ 379 (582)
.++ ........-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 843 211111234556799999999988777888888 77763
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=110.75 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=73.9
Q ss_pred eccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 007989 397 TVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 397 ~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g 474 (582)
.-.+||.++|.+||+.++++.++..++|++.||..|+||||+||.++|++|++.|.+++...|+++||.+|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 346899999999999999999998999999999999999999999999999999999999999999999999998765
No 87
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=108.03 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcC
Q 007989 399 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (582)
Q Consensus 399 ~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g 474 (582)
|+||.++|.+||+.|+++.++..++|++.||..|+||||+||.++|++|++.|.+++...|+.+||.+|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999998753
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.35 E-value=1.9e-12 Score=109.55 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCccCccc
Q 007989 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVM 480 (582)
Q Consensus 402 d~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~~~~~ 480 (582)
|.++|.+||+.|+++.++.+++|++.||..|+||||+||.++|++|++.|.+++...|+++||.+|++++..+.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998876643
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.5e-11 Score=127.04 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEeechhHHHHhhhhh
Q 007989 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEFVEMFVGVG 308 (582)
Q Consensus 235 G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~------~~pfi~is~s~~~~~~vG~~ 308 (582)
|++++.+.|...++.- + +..+|||||||+|||++|+++|..+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 5667777777766521 1 3479999999999999999999863 34677776542 0123
Q ss_pred hhHHHHHHHHHhhCC----CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccc
Q 007989 309 ASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (582)
Q Consensus 309 ~~~vr~lF~~A~~~~----P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~ 384 (582)
...+|++++.+.... ..|++|||+|.+ + ....|.|+..|+. +..++++|.+||.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t---~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------T---QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------C---HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHh-----------C---HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 456788888885432 469999999999 2 2346778887774 3456788888888999999
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHc
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l 414 (582)
++++ | .+++++|+.++..+.++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 78999999999999888776
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.28 E-value=4.1e-12 Score=134.57 Aligned_cols=193 Identities=21% Similarity=0.372 Sum_probs=125.4
Q ss_pred cccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEeechhHHHH-----
Q 007989 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEM----- 303 (582)
Q Consensus 231 ~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~--pfi~is~s~~~~~----- 303 (582)
.+++|.+....++.+.+..+.... ..+|++|++||||+++|+++....+. +|+.++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 467899999988888887665432 26999999999999999999876643 4999999865432
Q ss_pred hhhhhh-------hHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhc--CccC----CCCe
Q 007989 304 FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (582)
Q Consensus 304 ~vG~~~-------~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld--~~~~----~~~v 370 (582)
++|... +.-...|+.|.++ +||||||+.+ +...+..+.++|++-. .... ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 222211 1123467776554 8999999999 5566777777776432 1111 1257
Q ss_pred EEEEecCccccccccccCCCCccc-------eeeccCCCHHHHHH----HHHHHcC----C-----CCCCccccHHHHHH
Q 007989 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGS----N-----KKFDADVSLDVIAM 430 (582)
Q Consensus 371 iVIaaTN~~~~LD~aLlrpgRFdr-------~I~i~~Pd~~eR~~----Il~~~l~----~-----~~l~~dvdl~~lA~ 430 (582)
.+|+|||.. +. .+...|+|.. .+.+.+|++.+|.+ ++++++. . ..++++.--.....
T Consensus 265 rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 265 RVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 899999852 11 1222233322 66788899888754 2233221 1 12344432233345
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 007989 431 RTPGFSGADLANLLNEAAILA 451 (582)
Q Consensus 431 ~t~G~sgadL~~lv~eA~~~A 451 (582)
.|+| |.++|+|+++.|+..+
T Consensus 342 ~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp CCTT-HHHHHHHHHHHHHHTC
T ss_pred CCCc-HHHHHHHHHHHHHHhC
Confidence 7899 9999999999998765
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.26 E-value=1.6e-11 Score=156.05 Aligned_cols=171 Identities=19% Similarity=0.287 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHh---------------hCCCeEE
Q 007989 264 PKGVLLVGPPGTGKTLLAK-AIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK---------------ENAPCIV 327 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LAr-AlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~---------------~~~P~IL 327 (582)
.+++||+||||||||++|+ +++...+.+++.++++...+ ...+...++... .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 4589999999999999994 45555578888888765432 233444444331 2345899
Q ss_pred EEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCC--------CCeEEEEecCccc-----cccccccCCCCccc
Q 007989 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRAD-----ILDSALLRPGRFDR 394 (582)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~--------~~viVIaaTN~~~-----~LD~aLlrpgRFdr 394 (582)
||||+|.-...+. +.......+.++++. .++... .++.+|||+|+|. .|+++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999997533321 233455677777642 232111 3589999999994 89999999 99 7
Q ss_pred eeeccCCCHHHHHHHHHHHcCCCC-CCcccc-------------HHHHHHhC-------CCCcHHHHHHHHHHHHH
Q 007989 395 QVTVDVPDIRGRTEILKVHGSNKK-FDADVS-------------LDVIAMRT-------PGFSGADLANLLNEAAI 449 (582)
Q Consensus 395 ~I~i~~Pd~~eR~~Il~~~l~~~~-l~~dvd-------------l~~lA~~t-------~G~sgadL~~lv~eA~~ 449 (582)
.+.++.|+.+++..|+..+++... ..+++. ...+.... --||.+||.++++-...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 899999999999999988764321 222211 11111111 13789999998876554
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.24 E-value=3.9e-11 Score=113.16 Aligned_cols=134 Identities=17% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCcccccccchH-HHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechh
Q 007989 225 NTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 299 (582)
Q Consensus 225 ~~~~~f~dI~G~d~-~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~ 299 (582)
..+.+|+++++.++ .++.+..+..++.+. ....+.+++|+||||||||+|++++++.+ |..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34568999987543 333333333333332 12235689999999999999999999876 77888899988
Q ss_pred HHHHhhhhhhh-HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 300 ~~~~~vG~~~~-~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
+.+.+...... ....+++.. ..|.+|+|||++..+ .+......+.+++.... ..+..+|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 87654322111 011222222 256899999998652 24455566777766542 134567777776
Q ss_pred c
Q 007989 379 A 379 (582)
Q Consensus 379 ~ 379 (582)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.15 E-value=5.8e-11 Score=98.98 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCc
Q 007989 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (582)
Q Consensus 402 d~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~ 475 (582)
|.++|.+||+.|+++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||..|+.++.+..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999999889999999999999999999999999999999999999999999999999987654
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.09 E-value=2.6e-10 Score=123.41 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=124.5
Q ss_pred cccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHH-HHhcCCCEEEeech-----hHHHHhhh
Q 007989 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGS-----EFVEMFVG 306 (582)
Q Consensus 233 I~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAl-A~e~~~pfi~is~s-----~~~~~~vG 306 (582)
|.|++.+|..+.-.+.- .-.+ .+-.-++||.|+||| ||++|+++ +.-+.. ..+.++. .+...+.+
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEc
Confidence 89999988766544321 1000 111227999999999 99999999 665533 2333321 11100000
Q ss_pred -hhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhh----hcCccCCCCeEEEEecCccc-
Q 007989 307 -VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----MDGFEGNTGIIVIAATNRAD- 380 (582)
Q Consensus 307 -~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~----ld~~~~~~~viVIaaTN~~~- 380 (582)
.+...-...+..|..+ ++|||||+.+ ....+..|.+.+++ +.|..-+..+.||||+|+.+
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 0000011234445444 9999999998 33444444444443 11222245689999999865
Q ss_pred ----------cccccccCCCCcccee-eccCCCHHHHH---------HHHHH---HcC----CCCCCccccHHHH-----
Q 007989 381 ----------ILDSALLRPGRFDRQV-TVDVPDIRGRT---------EILKV---HGS----NKKFDADVSLDVI----- 428 (582)
Q Consensus 381 ----------~LD~aLlrpgRFdr~I-~i~~Pd~~eR~---------~Il~~---~l~----~~~l~~dvdl~~l----- 428 (582)
.|++++++ |||..+ .++.|+.+.-. +.++. +.+ ...+++++. +.+
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~-~yI~~~y~ 428 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEAR-KRLEHWYE 428 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHH-HHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHH-HHHHHHHH
Confidence 78889999 999743 45666644311 11221 122 122332211 111
Q ss_pred ----H--H------hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHc
Q 007989 429 ----A--M------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (582)
Q Consensus 429 ----A--~------~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~ 473 (582)
. . ..-|.|++.+..+++-|...|.-+++..|+.+|+.+|+.-+..
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 0 0 2457899999999999999999999999999999999875543
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.09 E-value=2.6e-10 Score=109.28 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=66.5
Q ss_pred CCCcccccccchHHHH-HHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH
Q 007989 226 TGVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~-~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~ 301 (582)
...+|+++++.+...+ .+..+..++..... ...|++++|+||||||||++|++++.++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3568999998764333 33333333332210 1124799999999999999999999877 7899999999887
Q ss_pred HHhhhhh-hhHHHHHHHHHhhCCCeEEEEeCCCcc
Q 007989 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (582)
Q Consensus 302 ~~~vG~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 335 (582)
..+.... ...+..+++.... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 6543211 1112333444333 359999999775
No 96
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.05 E-value=4.7e-11 Score=99.50 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHcCcc
Q 007989 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 476 (582)
Q Consensus 404 ~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v~~g~~ 476 (582)
++|.+||+.|+++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||..|+.++..+..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999988889999999999999999999999999999999999999999999999999876543
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=5.5e-09 Score=107.36 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=118.1
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH-----
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF----- 300 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~----- 300 (582)
+....++++|.++..+.|.+ +. . ..++++||+|+|||+|++.++++++.+++++++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 34456788999888777666 42 2 279999999999999999999998878888887643
Q ss_pred ------HHHhhhh-----------------------------------hhhHHHHHHHHHhhC--CCeEEEEeCCCcccc
Q 007989 301 ------VEMFVGV-----------------------------------GASRVRDLFKKAKEN--APCIVFVDEIDAVGR 337 (582)
Q Consensus 301 ------~~~~vG~-----------------------------------~~~~vr~lF~~A~~~--~P~ILfIDEID~l~~ 337 (582)
...+... ....+..+++..... .|.+|+|||+|.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 1110000 012345555555432 389999999999843
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc---------ccccCCCCccceeeccCCCHHHHHH
Q 007989 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD---------SALLRPGRFDRQVTVDVPDIRGRTE 408 (582)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD---------~aLlrpgRFdr~I~i~~Pd~~eR~~ 408 (582)
.. .......+..+.... .++.+|.+++....+. ..+ .+|+...+.+++.+.++..+
T Consensus 152 ~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 152 LR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp CT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHH
T ss_pred cC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHH
Confidence 10 111233444444321 2455666655432111 112 23666789999999999999
Q ss_pred HHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 409 ILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 409 Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~e 446 (582)
+++..+.......+. ...+...+.| ++.-+..++..
T Consensus 217 ~l~~~~~~~~~~~~~-~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 217 FLRRGFQEADIDFKD-YEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHTCCCCC-HHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCc-HHHHHHHhCC-CHHHHHHHHHH
Confidence 998765432222222 3778888988 67777766654
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.01 E-value=9.2e-12 Score=129.08 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec--hhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCccccc
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~--s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~ 338 (582)
....+.++|+||||||||+||.++|.+.+.++++++. ++.++.+.......+..+++...+.. +|+|||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3334457999999999999999999876555444444 33222222223334445555555544 9999999999543
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccc
Q 007989 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (582)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aL 386 (582)
..... ......+.+.+++..++++....++.+|+++| +...|+++
T Consensus 198 ~~~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32210 01112355677777776665556788899988 45555554
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.00 E-value=3e-08 Score=101.68 Aligned_cols=191 Identities=20% Similarity=0.191 Sum_probs=116.3
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH-----
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV----- 301 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~----- 301 (582)
...-++++|.++..+.|.+.+.. | +.++++||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 44557789999999988887653 1 3799999999999999999999875 7777775432
Q ss_pred -------HHhh--------------------hhh----hhHHHHHHHHH----hhCCCeEEEEeCCCcccccCCCCCCCC
Q 007989 302 -------EMFV--------------------GVG----ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGG 346 (582)
Q Consensus 302 -------~~~v--------------------G~~----~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~ 346 (582)
..+. +.. ...+.++++.. ....|.+|+|||+|.+..... ..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~ 147 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RG 147 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TT
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cc
Confidence 1110 000 11233333322 222389999999999842100 01
Q ss_pred ChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc---------cccccCCCCccceeeccCCCHHHHHHHHHHHcCCC
Q 007989 347 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL---------DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK 417 (582)
Q Consensus 347 ~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L---------D~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~ 417 (582)
.......+..++... .++.+|.++.....+ ...+. ||+...+.+++.+.++-.++++..+...
T Consensus 148 ~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 148 GKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp THHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 122233343333321 345555555432111 11222 3666688999999999999998776543
Q ss_pred CCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 007989 418 KFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (582)
Q Consensus 418 ~l~-~dvdl~~lA~~t~G~sgadL~~lv~e 446 (582)
... .+.....+...+.| ++.-+..++..
T Consensus 220 ~~~~~~~~~~~i~~~tgG-~P~~l~~~~~~ 248 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDG-IPGWLVVFGVE 248 (350)
T ss_dssp TCCCCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 322 23346778888888 67666666554
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.93 E-value=2.2e-09 Score=99.24 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=68.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~ 340 (582)
...++|+||+|+|||+|++++++.+ |.+++++++.++... +....|.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 3479999999999999999999977 777888988776543 112357899999998872
Q ss_pred CCCCCCChHHHHHHHHHHhhhcCccCCCCe-EEEEecC-cccccc--ccccCCCCccceeecc
Q 007989 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATN-RADILD--SALLRPGRFDRQVTVD 399 (582)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~~ld~~~~~~~v-iVIaaTN-~~~~LD--~aLlrpgRFdr~I~i~ 399 (582)
...++.+.+++..+.. .... ++| +|| .|+.+. +.|.+ |+..-..+.
T Consensus 97 -------~~~~~~l~~li~~~~~---~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 97 -------NEEQALLFSIFNRFRN---SGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp -------SHHHHHHHHHHHHHHH---HTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred -------hHHHHHHHHHHHHHHH---cCCcEEEE-ECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 2225556666655431 2222 444 555 455443 67776 776544443
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.87 E-value=2.5e-09 Score=110.42 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=62.7
Q ss_pred CCcccccccchHHHH-HHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHH
Q 007989 227 GVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~-~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~ 301 (582)
+.+|+++.+.+.... .+..+..++.... ...+++++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 468999987653222 2222333333211 1124689999999999999999998755 5899999999887
Q ss_pred HHhhhhh-hhHHHHHHHHHhhCCCeEEEEeCCCcc
Q 007989 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (582)
Q Consensus 302 ~~~vG~~-~~~vr~lF~~A~~~~P~ILfIDEID~l 335 (582)
..+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7554321 111122233332 2459999999765
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.71 E-value=7.4e-09 Score=100.47 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=84.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh--------cC-CCEEEeechhHHHHhh----------hh-----hhhHHHHHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE--------AG-VPFFSISGSEFVEMFV----------GV-----GASRVRDLFKKA 319 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e--------~~-~pfi~is~s~~~~~~v----------G~-----~~~~vr~lF~~A 319 (582)
+--.|++|+||||||++|.+.+.. .| .++++.++.++..... .. ....+.+++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 446899999999999999886433 35 7888777776543211 11 11233332211
Q ss_pred hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeecc
Q 007989 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~ 399 (582)
....++||+|||++.+.+.+... .+. ..++..++. ....++-+|.+|+.++.|+.++++ |++.++++.
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~----~e~-----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAG----SKI-----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTT----CCC-----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCcccc----chh-----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 23446899999999997655321 111 124444442 234566778888889999999988 999999998
Q ss_pred CCCHHHH
Q 007989 400 VPDIRGR 406 (582)
Q Consensus 400 ~Pd~~eR 406 (582)
.|....+
T Consensus 152 ~~~~~~~ 158 (199)
T 2r2a_A 152 SNKMGMR 158 (199)
T ss_dssp ECSSCCE
T ss_pred CcccCcc
Confidence 8765443
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=1.9e-07 Score=119.15 Aligned_cols=165 Identities=16% Similarity=0.208 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 344 (582)
.|+++.||+|||||.+++++|+.+|.+++.++|++-.+ .+.+..+|..+... .+++++||++.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 48999999999999999999999999999999987443 23456667666443 369999999998
Q ss_pred CCChHHHHHHHHHHhhhc-------------C--ccCCCCeEEEEecCc----cccccccccCCCCccceeeccCCCHHH
Q 007989 345 GGNDEREQTLNQLLTEMD-------------G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRG 405 (582)
Q Consensus 345 ~~~~e~~~~L~~LL~~ld-------------~--~~~~~~viVIaaTN~----~~~LD~aLlrpgRFdr~I~i~~Pd~~e 405 (582)
..+....+.+.+..+. | +.-+..+.|++|.|+ ...|+++|.+ || +.+.+..||.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 4455555544443221 1 122446778899984 4578999988 88 689999999988
Q ss_pred HHHHHHHHcCCCCCCccc-----c-HHHHHHhCC-----CCcHHHHHHHHHHHHHHH
Q 007989 406 RTEILKVHGSNKKFDADV-----S-LDVIAMRTP-----GFSGADLANLLNEAAILA 451 (582)
Q Consensus 406 R~~Il~~~l~~~~l~~dv-----d-l~~lA~~t~-----G~sgadL~~lv~eA~~~A 451 (582)
..+|+-... ........ . +..+..... .|..+.+..+++.|....
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 888753321 11111111 0 111122222 268899999888776544
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.60 E-value=3.1e-08 Score=105.18 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=78.2
Q ss_pred hcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccc-
Q 007989 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR- 337 (582)
Q Consensus 259 ~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~- 337 (582)
++.+.+..++|+||||+|||+|++++++..+..++.+...+- +.. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~----------~~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD----------RLN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT----------THH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch----------hHH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 467777889999999999999999999988777665433220 000 0011112335789999999864
Q ss_pred cCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccC
Q 007989 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~ 400 (582)
.+... .+. .. .....+...+|| .+.|+.+||+++.+ +++++|+|++..+....
T Consensus 232 ~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 123344444554 35678889999999 79999999998776644
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.57 E-value=1.3e-07 Score=117.28 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=81.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH----Hhhh------------hhhhHHHHHHHHHh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVG------------VGASRVRDLFKKAK 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----~~vG------------~~~~~vr~lF~~A~ 320 (582)
|.+.+++++|+||||||||+||.+++.++ |..+.+++..+... ...| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46777899999999999999999997765 56777777664321 1122 22345566677778
Q ss_pred hCCCeEEEEeCCCcccccC---CCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 321 ENAPCIVFVDEIDAVGRQR---GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r---~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
..+|++|||||++++.+.+ +...........+.+.++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8899999999999887643 2111111112456788888888887777777777654
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.43 E-value=2e-06 Score=89.19 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=116.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEEEeechhHHHHhhhhhhhHHHHHHHHHhh----CCCeEEEEeCCCc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDA 334 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~-pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~----~~P~ILfIDEID~ 334 (582)
.+..+||+||+|+||+..+++++..+ +. ++..+... + ...++++++.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45589999999999999999998865 22 32222111 1 1345556655532 3457999999998
Q ss_pred -ccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc-----cccccccccCCCCccceeeccCCCHHHHHH
Q 007989 335 -VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-----ADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (582)
Q Consensus 335 -l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~-----~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~ 408 (582)
+. .. ..+.|+..++... ...++|+++++. ...+-+++.+ |. .++.+.+|+..+..+
T Consensus 88 kl~-----------~~---~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPN-----------AA---INEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCC-----------TT---HHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCC-----------hH---HHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 72 11 3455666665432 233444444432 2356778877 65 478899999999998
Q ss_pred HHHHHcCCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007989 409 ILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (582)
Q Consensus 409 Il~~~l~~~~l~-~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~~~v 471 (582)
.++..++..++. ++..++.++..+.| +.+++.+.++..+..+ +...||.+++++.+...
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 888877665543 22336778888877 8888888888776654 34579999988776543
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.42 E-value=4.6e-07 Score=98.26 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=99.2
Q ss_pred CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEe---------cC---ccccccccccCCCC
Q 007989 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA---------TN---RADILDSALLRPGR 391 (582)
Q Consensus 324 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaa---------TN---~~~~LD~aLlrpgR 391 (582)
|.|+||||+|.+ + ....+.|+..|+.... .++++++ ++ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l-----------~---~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------D---IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGC-----------B---HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhc-----------C---HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--h
Confidence 469999999999 2 3467777887775433 3555555 33 27789999999 9
Q ss_pred ccceeeccCCCHHHHHHHHHHHcCC--CCCCccccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007989 392 FDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRT-PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (582)
Q Consensus 392 Fdr~I~i~~Pd~~eR~~Il~~~l~~--~~l~~dvdl~~lA~~t-~G~sgadL~~lv~eA~~~A~r~~~~~It~~dl~~A~ 468 (582)
|.. +.+++|+.++..++++..+.. ..++++ .+..++... .| +++...++++.|...|..+++..|+.+|+.+++
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~-~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEE-ALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHH-HHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 976 699999999999999887643 233333 356777777 67 999999999999999999999999999999998
Q ss_pred HHHH
Q 007989 469 DRIV 472 (582)
Q Consensus 469 ~~v~ 472 (582)
.-++
T Consensus 435 ~~~~ 438 (456)
T 2c9o_A 435 ELFY 438 (456)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 6543
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.42 E-value=9.1e-07 Score=113.78 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=89.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-hcCCCEEEeechhHHHHhhhhhhhHHHHHHHHH----h------------hCCCeEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----K------------ENAPCIV 327 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~-e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A----~------------~~~P~IL 327 (582)
+++||+||||||||.+++.... ..+.+++.++++.-.+ +..+...++.. + .+..+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 4799999999999987765544 4466778888765432 23344444321 0 1223699
Q ss_pred EEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCc-------cCCCCeEEEEecCcc-----ccccccccCCCCccce
Q 007989 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-------EGNTGIIVIAATNRA-----DILDSALLRPGRFDRQ 395 (582)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~-------~~~~~viVIaaTN~~-----~~LD~aLlrpgRFdr~ 395 (582)
||||++.-.... -|.......+.++++.-.-+ ..-.++.+|||.|+| ..++++++| ||. .
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999998642211 12233455667776542111 112468899999987 468999999 996 6
Q ss_pred eeccCCCHHHHHHHHHHHc
Q 007989 396 VTVDVPDIRGRTEILKVHG 414 (582)
Q Consensus 396 I~i~~Pd~~eR~~Il~~~l 414 (582)
+.++.|+.+....|+..++
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999976543
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.12 E-value=1.1e-06 Score=85.41 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
+++|++||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999999865443
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.06 E-value=1.6e-05 Score=102.41 Aligned_cols=126 Identities=19% Similarity=0.244 Sum_probs=90.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~ 344 (582)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999875432 2344455554332 358899999998
Q ss_pred CCChHHHHHHHHHHhhh-------------c-C--ccCCCCeEEEEecCc----cccccccccCCCCccceeeccCCCHH
Q 007989 345 GGNDEREQTLNQLLTEM-------------D-G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIR 404 (582)
Q Consensus 345 ~~~~e~~~~L~~LL~~l-------------d-~--~~~~~~viVIaaTN~----~~~LD~aLlrpgRFdr~I~i~~Pd~~ 404 (582)
..+...++.+.+..+ + | +.-+.++.|++|.|+ ...|+++|.. || |.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 344444444433311 1 2 223456788999984 3578999999 88 67999999998
Q ss_pred HHHHHHH
Q 007989 405 GRTEILK 411 (582)
Q Consensus 405 eR~~Il~ 411 (582)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.01 E-value=1.3e-05 Score=76.74 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
.+...-++|+||||+|||+|++.+|...+.++++++..+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344446899999999999999999986677888888654
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.99 E-value=2.6e-05 Score=73.88 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
.+.|.||+|+|||+|++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765543
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.91 E-value=1.7e-05 Score=80.17 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGV 290 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~ 290 (582)
++++|+||||||||++|+++|.....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 48999999999999999999997543
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=3.1e-05 Score=75.24 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhH------HHH--hhhhh---------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEM--FVGVG--------------- 308 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~------~~~--~vG~~--------------- 308 (582)
.+...-++|+||||+|||+|++.++... +...+++++.+- ... ..+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3444569999999999999999999852 456788876541 110 01100
Q ss_pred hh----HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 309 AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 309 ~~----~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
.. .+..+.+......|.+|+|||+..+....-.+. +...++++.+.+++..+..+....++.||.++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~ 173 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQV 173 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 01 122233444556799999999998753221100 0012222234444444433322335566666654
No 115
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.87 E-value=0.00027 Score=78.26 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=98.0
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeechhH
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEF 300 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s~~ 300 (582)
.....++|.+...++|.+.+.... ..++-++|+||+|+|||+||+.++... ...++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 455679999999988877764211 124469999999999999999997532 112444433221
Q ss_pred -----HHHh------hhh----------hhhHHHHHHHHH-h-hCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHH
Q 007989 301 -----VEMF------VGV----------GASRVRDLFKKA-K-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (582)
Q Consensus 301 -----~~~~------vG~----------~~~~vr~lF~~A-~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (582)
...+ .+. ....+...+... . ...|++|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 1111 110 011122222222 2 236899999999653 0 1
Q ss_pred HhhhcCccCCCCeEEEEecCccccccccccCCCCccceeec---cCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCC
Q 007989 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV---DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (582)
Q Consensus 358 L~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i---~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G 434 (582)
+.. + ..+..||.||..+..... . . + ..+.+ +..+.++-.+++..++.............++..+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 222 2 234567777765432211 1 1 1 22333 467888888899887654221112346788999998
Q ss_pred CcHHHHHHHH
Q 007989 435 FSGADLANLL 444 (582)
Q Consensus 435 ~sgadL~~lv 444 (582)
.+--|..+.
T Consensus 320 -~PLal~~~a 328 (591)
T 1z6t_A 320 -SPLVVSLIG 328 (591)
T ss_dssp -CHHHHHHHH
T ss_pred -CcHHHHHHH
Confidence 555554443
No 116
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.87 E-value=3.8e-05 Score=83.11 Aligned_cols=132 Identities=23% Similarity=0.313 Sum_probs=69.9
Q ss_pred cccccccCCCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEE
Q 007989 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFF 293 (582)
Q Consensus 218 ~~~~~~~~~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~-pfi 293 (582)
.+.+.+++.+.+|+++ .+++++.+..++..+...+ ..++|.|+||||||+++.+++..+ +. .++
T Consensus 11 ~~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ----------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 3567788889999987 3455555556666555432 279999999999999999998765 33 455
Q ss_pred EeechhHHH----HhhhhhhhHHHHHHHHH----------------hhCCCeEEEEeCCCcccccCCCCCCCCChHHHHH
Q 007989 294 SISGSEFVE----MFVGVGASRVRDLFKKA----------------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (582)
Q Consensus 294 ~is~s~~~~----~~vG~~~~~vr~lF~~A----------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (582)
.+..+.-.. ...+.....+..++... ......+|+|||+..+ +. ..
T Consensus 79 ~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~-----------~~---~~ 144 (459)
T 3upu_A 79 LAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMY-----------DR---KL 144 (459)
T ss_dssp EEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGC-----------CH---HH
T ss_pred EecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhC-----------CH---HH
Confidence 444322111 11222223333333210 0113468999999876 21 24
Q ss_pred HHHHHhhhcCccCCCCeEEEEecCc
Q 007989 354 LNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 354 L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
+..++..+. ....+++++-.+.
T Consensus 145 ~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 145 FKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHHHHHHSC---TTCEEEEEECTTS
T ss_pred HHHHHHhcc---CCCEEEEECCHHH
Confidence 444554443 3445677775544
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=2.1e-05 Score=75.57 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
.+...-++|+||||+|||+|++.++... +.++++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3344468999999999999999998653 5677776643
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.86 E-value=4.4e-05 Score=80.57 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=66.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh----hhh-----------hhhHHHHHHHHH-h
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV-----------GASRVRDLFKKA-K 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~----vG~-----------~~~~vr~lF~~A-~ 320 (582)
|.+...-++|+||||+|||+||..+|.++ +.++++++...-.+.. .|. ....+.+.++.. +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34445579999999999999999997754 6788888865422211 111 112222333322 3
Q ss_pred hCCCeEEEEeCCCcccccCCC-CCCCC-C-hHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 321 ENAPCIVFVDEIDAVGRQRGT-GIGGG-N-DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~~r~~-~~~~~-~-~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
...+++|+||.+..+...... +..+. + ....+.+.+++..+..+....++.||.+.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 467899999999999642211 00000 0 02224455666666544444556666553
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=1.8e-05 Score=83.00 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=50.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH----hhhhhh--------hHHHHHHH----HHh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVGA--------SRVRDLFK----KAK 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~----~vG~~~--------~~vr~lF~----~A~ 320 (582)
|.+...-++|+||||+|||+||..++..+ +.++++++...-... ..|... ..+.++++ .++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 33444569999999999999999998654 667888876532211 112110 01222222 233
Q ss_pred hCCCeEEEEeCCCcccc
Q 007989 321 ENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~ 337 (582)
...|++|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56799999999999863
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.81 E-value=2.6e-05 Score=80.55 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=68.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhH--HHH---h---hhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEM---F---VGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~--~~~---~---vG~~-------------- 308 (582)
|.+...-++|+||||+|||++|..+|..+ +.++++++...- .+. + .|..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 34444569999999999999999998865 567888887642 110 0 1110
Q ss_pred -hh----HHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEec
Q 007989 309 -AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (582)
Q Consensus 309 -~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaT 376 (582)
.. .+..+....+. ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||.+.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 01 12233334444 6789999999999864321110 11123344566666666554444455555543
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.80 E-value=4.3e-05 Score=80.32 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH----hhhhh--------hhHHHHHHHH----Hhh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVG--------ASRVRDLFKK----AKE 321 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~----~vG~~--------~~~vr~lF~~----A~~ 321 (582)
.+...-++|+||||+|||+|+..++..+ +.++++++..+.... -+|.. ...+.+++.. .+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3444469999999999999999998764 678888887542211 01110 1112222222 234
Q ss_pred CCCeEEEEeCCCcccc-cCCCCCCCCC--hHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 322 NAPCIVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~-~r~~~~~~~~--~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
..|.+++||.+..+.+ ..-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 6789999999999865 1111111111 1234556666666655544455555554
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.78 E-value=7.6e-05 Score=72.71 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH--Hh--cCCCEEEeechhHHHHh------hhh-----------------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSISGSEFVEMF------VGV----------------------- 307 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA--~e--~~~pfi~is~s~~~~~~------vG~----------------------- 307 (582)
.+...-+.|.||+|+|||+|++.++ .. .+...++++..+..... ++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 3344469999999999999999998 32 35555655543221100 000
Q ss_pred -------------hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEE
Q 007989 308 -------------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (582)
Q Consensus 308 -------------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIa 374 (582)
.......+........|.+|+|||.-+...... ......+.+..++..+. ..+..||.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~ 177 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEE
Confidence 011122233333457899999999977643211 12334455667776663 23456667
Q ss_pred ecCcccccc-----ccccCCCCc-cceeeccC
Q 007989 375 ATNRADILD-----SALLRPGRF-DRQVTVDV 400 (582)
Q Consensus 375 aTN~~~~LD-----~aLlrpgRF-dr~I~i~~ 400 (582)
+|+..+... +.+.. .+ |+++.+..
T Consensus 178 vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 178 TTEAPDPQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp EECCC----CCSSSSSCGG--GGCSEEEEEEE
T ss_pred EECCCCCCcccccccChhh--EeeeEEEEEee
Confidence 776654431 22222 45 77776653
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.73 E-value=8.2e-05 Score=68.96 Aligned_cols=40 Identities=15% Similarity=0.367 Sum_probs=34.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
|+-++|+|+||+|||+++++++..++.+++.++...+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4569999999999999999999999999998887766543
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.73 E-value=5.6e-05 Score=94.19 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=78.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh----hhh--------hhhHHHHHHHHHhh---
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV--------GASRVRDLFKKAKE--- 321 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~----vG~--------~~~~vr~lF~~A~~--- 321 (582)
|..+...++|+|+||+|||+||..+|.++ +.+++++++.+..+.. .|. .+..+.++++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 46667789999999999999999998866 5579999987654433 221 11234555555543
Q ss_pred -CCCeEEEEeCCCcccc-cCCCCC-CCCC-hHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 322 -NAPCIVFVDEIDAVGR-QRGTGI-GGGN-DEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 322 -~~P~ILfIDEID~l~~-~r~~~~-~~~~-~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
..|++|+||.++.+.. ....+. +... .-..+.+++++..|..+....++.||++...
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999965 221111 1111 1123457787878877766677777776643
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.69 E-value=0.00094 Score=79.55 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=101.9
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEeechh
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is~s~ 299 (582)
+....+++|.++..++|.+.+.... ..++-+.|+|+.|+|||+||+.++... ...++.++.+.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 3455679999999988887764221 124468999999999999999997652 11233444322
Q ss_pred -----HHHHh------hh----------hhhhHHHHHHHHHhhC--CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHH
Q 007989 300 -----FVEMF------VG----------VGASRVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 356 (582)
Q Consensus 300 -----~~~~~------vG----------~~~~~vr~lF~~A~~~--~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~ 356 (582)
....+ .+ .....+.+.+...... .+.+|+||+++...
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-------------------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------
Confidence 11100 00 0112233333333333 37899999997540
Q ss_pred HHhhhcCccCCCCeEEEEecCccccccccccCCCCccceeeccC-CCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCC
Q 007989 357 LLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV-PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (582)
Q Consensus 357 LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~-Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~ 435 (582)
.++.+ ..+..||.||..+...... . .....+.++. .+.++-.++|..+..............|++.+.|.
T Consensus 250 ---~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ---VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ---HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ---HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 11222 2345777788755433211 1 2234667775 78888888998776443333333477899999984
Q ss_pred cHHHHH
Q 007989 436 SGADLA 441 (582)
Q Consensus 436 sgadL~ 441 (582)
+--|+
T Consensus 321 -PLal~ 325 (1249)
T 3sfz_A 321 -PLVVS 325 (1249)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 43343
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=7.6e-05 Score=77.85 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=66.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhH--HH----Hh--hhhh---------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VE----MF--VGVG--------------- 308 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~--~~----~~--vG~~--------------- 308 (582)
.+...-++|+||||+|||+||..+|..+ +.++++++...- .+ .. .|..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 3344458999999999999999998863 557888876542 11 00 1110
Q ss_pred hhHH----HHHHHHHhh--CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecC
Q 007989 309 ASRV----RDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (582)
Q Consensus 309 ~~~v----r~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN 377 (582)
...+ ..+.+..+. ..+.+|+||.+..+....-.+. +...++++.+.+++..+..+....++.||.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1111 122233444 6789999999999864321100 111233445666666655544444556665543
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.64 E-value=9.5e-05 Score=77.72 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=51.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH----Hhhhh-----------hhhHHHHHHHHH-h
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGV-----------GASRVRDLFKKA-K 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----~~vG~-----------~~~~vr~lF~~A-~ 320 (582)
|.+...-++|+||||+|||+||..+|.++ +.++++++...-.+ .-.|. ....+.++++.. +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34445579999999999999999998754 67888888743211 11111 112233333322 3
Q ss_pred hCCCeEEEEeCCCcccc
Q 007989 321 ENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~ 337 (582)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 128
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.62 E-value=0.001 Score=65.46 Aligned_cols=161 Identities=25% Similarity=0.301 Sum_probs=84.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech--------hHHHHhhh----------h--hhhHHHHHHHHHhhC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS--------EFVEMFVG----------V--GASRVRDLFKKAKEN 322 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s--------~~~~~~vG----------~--~~~~vr~lF~~A~~~ 322 (582)
.+++.|+||+|||+++-.+|..+ |..++.++.. .+...... . .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 69999999999999999998764 7777655553 22211100 0 1122333322 3
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc--c----------------ccccc
Q 007989 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--A----------------DILDS 384 (582)
Q Consensus 323 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~--~----------------~~LD~ 384 (582)
.|.+++|||+-..-.. ...+...-+-+..++. .++=|++|+|. . +.++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 6889999998654111 1112223333333332 34567788873 2 23344
Q ss_pred cccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 007989 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (582)
Q Consensus 385 aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~dvdl~~lA~~t~G~sgadL~~lv~eA~~~A~ 452 (582)
.++. +.|.+.-++.|+.+- ++......-..++-.-..+... |+...|..+-+-|...++
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l----~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPREL----LERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTAA 209 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHH----HHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHHH----HHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHHH
Confidence 4444 556667777777553 3333333322222222222222 566667665555655554
No 129
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.57 E-value=0.00011 Score=70.51 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=28.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEeech
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 298 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~---------~pfi~is~s 298 (582)
.+...-+.|.||+|+|||+|++.++...- ...++++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 34444699999999999999999998542 236666654
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.56 E-value=0.00011 Score=78.38 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=65.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechhHH-H-------Hhhhhh--------------
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV-E-------MFVGVG-------------- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~~~-~-------~~vG~~-------------- 308 (582)
|+....-++|+||||+|||+|++.++... +...++++..+-. . .-+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 44444569999999999999999776433 2347788765421 0 001100
Q ss_pred -----hhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 309 -----~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
...+..+.+......|.+|+||++-.+....-.+ .+...++++.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0112222333445679999999998875432211 11223455555666666555444445666666553
No 131
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.56 E-value=3.1e-05 Score=73.61 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=38.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHHh--------hhh-----hhhHHHHHHHHHhhCCCeEEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF--------VGV-----GASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~~--------vG~-----~~~~vr~lF~~A~~~~P~ILfI 329 (582)
-++++||||+|||+++..++.+ .+.+++.+.... -..+ .|. ......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 5789999999999999766654 366655543220 0010 010 0011223333332 24679999
Q ss_pred eCCCcc
Q 007989 330 DEIDAV 335 (582)
Q Consensus 330 DEID~l 335 (582)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.00037 Score=67.57 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=29.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (582)
|.+...-++|+||||+|||+++..+|.. .+.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3444456899999999999999888664 36678887764
No 133
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.52 E-value=0.00062 Score=73.52 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCcc--------CCCCeEEEEec-----C
Q 007989 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT-----N 377 (582)
Q Consensus 311 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~--------~~~~viVIaaT-----N 377 (582)
..++.++.|..+ +|+|+||||.+++..+. .+++...+.+...||..+|+.. ...++++|+|. |
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 345556665333 39999999999765432 2334444556777888888632 34578999887 5
Q ss_pred ccccccccccCCCCccceeeccCCCHHHHHHHHHH--------H-----cCCCCCC-ccccHHHHHH-------hCCCCc
Q 007989 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV--------H-----GSNKKFD-ADVSLDVIAM-------RTPGFS 436 (582)
Q Consensus 378 ~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~--------~-----l~~~~l~-~dvdl~~lA~-------~t~G~s 436 (582)
..+ +-|.|+. ||..+|.++.++.++..+|+.. + +.+..+. .+..+..++. .|....
T Consensus 316 ~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 316 PSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp GGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred hhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 444 5578888 9999999999999999999831 1 1111111 1112444444 345556
Q ss_pred HHHHHHHHHHHHHHHHHh------CCCccCHHHHHHHH
Q 007989 437 GADLANLLNEAAILAGRR------GKAAISSKEIDDSI 468 (582)
Q Consensus 437 gadL~~lv~eA~~~A~r~------~~~~It~~dl~~A~ 468 (582)
.+.|++++..++..+..+ ..-.||.+++.+.+
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 677766666655544333 11246666666554
No 134
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.49 E-value=8.8e-05 Score=91.38 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=55.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHH----hhhh--------hhhHHHHHHHHHh----
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV--------GASRVRDLFKKAK---- 320 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~----~vG~--------~~~~vr~lF~~A~---- 320 (582)
|..+...++|+||||+|||+||..+|.++ +.++++++..+-.+. ..|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 45666789999999999999999998765 568888887654322 1221 1123344555443
Q ss_pred hCCCeEEEEeCCCcccc
Q 007989 321 ENAPCIVFVDEIDAVGR 337 (582)
Q Consensus 321 ~~~P~ILfIDEID~l~~ 337 (582)
...|++|+||+++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999963
No 135
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.49 E-value=0.00012 Score=75.11 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=66.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------------C----CCEEEeechhH--HHHh------hhhh----
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSISGSEF--VEMF------VGVG---- 308 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------------~----~pfi~is~s~~--~~~~------vG~~---- 308 (582)
|.+...-++|+||||+|||++|..+|..+ | .++++++...- .+.. .|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34444569999999999999999998753 2 57788886642 1100 1110
Q ss_pred -----------hh----HHHHHHHHHhh-CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEE
Q 007989 309 -----------AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (582)
Q Consensus 309 -----------~~----~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viV 372 (582)
.. .+..+.+..+. ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 01 11123333344 5688999999999864321110 1112344456666666655544455666
Q ss_pred EEe
Q 007989 373 IAA 375 (582)
Q Consensus 373 Iaa 375 (582)
|.+
T Consensus 253 i~~ 255 (322)
T 2i1q_A 253 LVT 255 (322)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 136
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.00029 Score=72.88 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=60.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEeechhHHH----Hhhhhh--------hhHHHHH----HHH---Hhh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE----MFVGVG--------ASRVRDL----FKK---AKE 321 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is~s~~~~----~~vG~~--------~~~vr~l----F~~---A~~ 321 (582)
-++++||||+|||+|+..++.++ +..++++++.+-.. .-.|.. +....++ .+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 47899999999999988876543 66788888754221 111211 1112222 222 255
Q ss_pred CCCeEEEEeCCCcccccCC-CCC-CC---CChHHHHHHHHHHhhhcCccCCCCeEEEEe
Q 007989 322 NAPCIVFVDEIDAVGRQRG-TGI-GG---GNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (582)
Q Consensus 322 ~~P~ILfIDEID~l~~~r~-~~~-~~---~~~e~~~~L~~LL~~ld~~~~~~~viVIaa 375 (582)
.+|.+|+||-|.++.++.. .+. +. ++..+.+.+.+.|..+..+....++.||.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 6899999999999974321 111 10 011244556666655544433445555443
No 137
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.45 E-value=0.00024 Score=74.26 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEeechh
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE 299 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---------~~pfi~is~s~ 299 (582)
|.+...-+.|+||||+|||+|++.++... +..+++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 34444569999999999999999999876 23567777644
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.42 E-value=0.004 Score=68.68 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=93.7
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH----hcCC-----CEEEeech---hHH
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG----EAGV-----PFFSISGS---EFV 301 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~----e~~~-----pfi~is~s---~~~ 301 (582)
+|.++.++++.+.+..-. ...++-|.|+|++|+|||+||+.+++ .... -++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499999998888774321 11245799999999999999999996 2322 12333321 111
Q ss_pred ---HHh---hhhh-------------hhHHHHHHHHHhhCC-CeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhh
Q 007989 302 ---EMF---VGVG-------------ASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (582)
Q Consensus 302 ---~~~---vG~~-------------~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~l 361 (582)
..+ ++.. ...+...+....... +++|+||+++.. .+. .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------------~~~--~~~~-- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------------ETI--RWAQ-- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------------HHH--HHHH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------------hhh--cccc--
Confidence 111 1111 011234444444454 899999999764 111 1111
Q ss_pred cCccCCCCeEEEEecCccccccccccCCCCccceeeccCCCHHHHHHHHHHHcCCCCCCcc--ccHHHHHHhCCC
Q 007989 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD--VSLDVIAMRTPG 434 (582)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~LD~aLlrpgRFdr~I~i~~Pd~~eR~~Il~~~l~~~~l~~d--vdl~~lA~~t~G 434 (582)
..+..||.||....... .. . -.+..+.++..+.++-.++|..+.......++ .....|++.+.|
T Consensus 263 -----~~gs~ilvTTR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G 328 (549)
T 2a5y_B 263 -----ELRLRCLVTTRDVEISN-AA-S--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG 328 (549)
T ss_dssp -----HTTCEEEEEESBGGGGG-GC-C--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT
T ss_pred -----cCCCEEEEEcCCHHHHH-Hc-C--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC
Confidence 13456777776543221 11 1 13356888889999999999988544332111 124567777777
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.0003 Score=69.13 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=44.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh-------HHHHhhhhh-----hhHHHHHHHHHhh----CCCeE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE-------FVEMFVGVG-----ASRVRDLFKKAKE----NAPCI 326 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~-------~~~~~vG~~-----~~~vr~lF~~A~~----~~P~I 326 (582)
-++++||||+|||+++..++.++ +..++.++... +.+. .|.. .....++++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 47788999999999998887655 66777664322 1111 1110 1122356666654 34789
Q ss_pred EEEeCCCcc
Q 007989 327 VFVDEIDAV 335 (582)
Q Consensus 327 LfIDEID~l 335 (582)
|+|||++.+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999887
No 140
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.38 E-value=0.00038 Score=70.70 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 237 d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
++..+.+.+++..+... ......|.-++|.||||+|||++|+.++.+.+..++.+++..+.
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 34444555555543222 12334567899999999999999999999885566778876553
No 141
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00065 Score=65.89 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=29.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e----~~~pfi~is~s 298 (582)
|.++..-++++|+||+|||++|..+|.+ .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 3444456999999999999999887543 37788888754
No 142
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.35 E-value=0.00011 Score=68.63 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~ 304 (582)
++.++|+||||+|||++++.+|..++.+++. ..++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~--~d~~~~~~ 43 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD--SDKEIEKR 43 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHH
Confidence 4579999999999999999999999998874 44554443
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.31 E-value=0.00058 Score=67.74 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=34.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
...|..++|.|+||+|||++|+.++..++.+++.+++..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 44567899999999999999999999998777778887763
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.28 E-value=0.00049 Score=69.09 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEeechh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSE 299 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-------------~~pfi~is~s~ 299 (582)
..-++|+||||+|||+|++.++..+ +.++++++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3469999999999999999998643 24677777543
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00022 Score=66.69 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
...|.-++|.|+||+|||++++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999988765
No 146
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.00018 Score=68.56 Aligned_cols=39 Identities=36% Similarity=0.484 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
.++.++|.||||+|||++++++|+.++.+++. ..++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 34579999999999999999999999998864 4455443
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.22 E-value=0.0021 Score=69.35 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh---h----------hhhhhHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---V----------GVGASRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~---v----------G~~~~~vr~lF~~A 319 (582)
.|.-++++|++|+|||+++..+|..+ |..+..+++..+.. .+ . ......+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754 66777777653311 00 0 01223346677788
Q ss_pred hhCCCeEEEEeCCCcc
Q 007989 320 KENAPCIVFVDEIDAV 335 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l 335 (582)
+...+.+++||..-.+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777789999987443
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.20 E-value=0.00071 Score=73.09 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
|..+..-++|.|+||+|||+|+..+|..+ |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44444569999999999999999997743 6688888753
No 149
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.15 E-value=0.0024 Score=62.71 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech-hHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-~~~~ 302 (582)
.++++||+|+|||.+|.+++...+.+++.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 489999999999999999998888777776644 4443
No 150
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00036 Score=65.32 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
..+.-+.|.||||+||||+++.+++..+.+.+.+++.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3345699999999999999999999888888888876653
No 151
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.12 E-value=0.00068 Score=62.33 Aligned_cols=37 Identities=27% Similarity=0.667 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+..+.|.||||+|||++++.+|+.++.+++ ++.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 346999999999999999999999987654 5555443
No 152
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.11 E-value=0.00098 Score=71.76 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
|..+..-++|.|+||+|||++|..+|... +.|+++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45555568999999999999999987643 6788888764
No 153
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.08 E-value=0.00029 Score=65.76 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
-|+|.|+||+|||++|+.+|..++.+++ +..++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--d~D~~~~~ 39 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLL--DTDVAIEQ 39 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEE--EHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEE--eCchHHHH
Confidence 5999999999999999999999999876 44555443
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.07 E-value=0.00035 Score=63.88 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
-++|.||||+|||++++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998886544
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.07 E-value=0.00099 Score=66.34 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=33.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~ 303 (582)
+.-|+|.|+||+|||++|+.++.. .|.+++.++...+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 446999999999999999999997 7889887777766543
No 156
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.02 E-value=0.00036 Score=64.92 Aligned_cols=31 Identities=39% Similarity=0.762 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
++.|+|+|+||+|||++++.++..++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4579999999999999999999999987764
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.02 E-value=0.00093 Score=70.13 Aligned_cols=68 Identities=26% Similarity=0.355 Sum_probs=44.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeec-hhHH---------HHhhhhhhhHHHHHHHHHhhCCCeEEEEeC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG-SEFV---------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~-s~~~---------~~~vG~~~~~vr~lF~~A~~~~P~ILfIDE 331 (582)
-+++.||+|+|||++.+++++.. +..++.+.- .++. ...++.....+.+.+..+....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48999999999999999998865 233332211 0110 001111223455678888889999999999
Q ss_pred CC
Q 007989 332 ID 333 (582)
Q Consensus 332 ID 333 (582)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 158
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.01 E-value=0.00045 Score=65.56 Aligned_cols=38 Identities=39% Similarity=0.608 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
..|.-|+|.|+||+|||++|+.++..++.+++. ..++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~--~d~~~ 55 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS--TGELF 55 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe--hhHHH
Confidence 345579999999999999999999999988654 44443
No 159
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.00 E-value=0.002 Score=71.42 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred eEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc--cccccccCCCCccceeeccCCC
Q 007989 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD 402 (582)
Q Consensus 325 ~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~--~LD~aLlrpgRFdr~I~i~~Pd 402 (582)
.+|+|||++.+.... ..+....+.++..+- ...+|.+|.+|.+|. .++..++. -|..+|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999885421 234455555655542 356899999999987 78877776 687888999999
Q ss_pred HHHHHHHHH
Q 007989 403 IRGRTEILK 411 (582)
Q Consensus 403 ~~eR~~Il~ 411 (582)
..+-..|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888888874
No 160
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.00 E-value=0.00038 Score=64.52 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.++|.||||+|||++|+++|..++.+++ +..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~--d~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL--DSDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE--cccHHHH
Confidence 5899999999999999999999998876 4445443
No 161
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.00 E-value=0.00084 Score=74.87 Aligned_cols=96 Identities=25% Similarity=0.355 Sum_probs=56.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeechhHHHH----hhhhhhhHHHHHHHHH---------hhCCCeEEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKA---------KENAPCIVFV 329 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s~~~~~----~vG~~~~~vr~lF~~A---------~~~~P~ILfI 329 (582)
.+++.||||||||+++++++.. .+.+++.+..+.-... ..+.....+..++... ......+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 6899999999999999999764 3667766543322111 1122223333333211 0113479999
Q ss_pred eCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCc
Q 007989 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (582)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~ 378 (582)
||+..+. ...+..|+..+. ....+++++-.+.
T Consensus 286 DEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 286 DEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp CCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred cCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 9998771 235556665443 3456777776554
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.98 E-value=0.00039 Score=65.38 Aligned_cols=31 Identities=42% Similarity=0.696 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh-cCCCEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE-AGVPFFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e-~~~pfi~ 294 (582)
+..++|+|+||+|||++++.+|.. .|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999999 6876654
No 163
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.97 E-value=0.00042 Score=63.71 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
..++|.|+||+|||++++.+|..++.|++. ..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 379999999999999999999999999874 4444443
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.97 E-value=0.0019 Score=70.96 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=51.4
Q ss_pred Ce-EEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccc--cccccccCCCCccceeeccC
Q 007989 324 PC-IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDV 400 (582)
Q Consensus 324 P~-ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~--~LD~aLlrpgRFdr~I~i~~ 400 (582)
|. +|+|||+..+.... ..+.+..+..+... ....++.+|.+|.+|. .++..+.. -|..+|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998774211 12233344444332 2245788999999886 57777766 6777889999
Q ss_pred CCHHHHHHHHHH
Q 007989 401 PDIRGRTEILKV 412 (582)
Q Consensus 401 Pd~~eR~~Il~~ 412 (582)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999988888753
No 165
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.96 E-value=0.001 Score=67.24 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=28.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeec
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~ 297 (582)
|.....-++|.||||+|||+|++.+|... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33444468999999999999999998754 546766654
No 166
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00087 Score=61.67 Aligned_cols=36 Identities=31% Similarity=0.670 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-hcCCCEEEeechhHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEFV 301 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~-e~~~pfi~is~s~~~ 301 (582)
|+-++|.|+||+|||++|+.++. ..+ +..++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHHH
Confidence 45799999999999999999998 455 4455544443
No 167
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.00046 Score=64.19 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.|+-++|.|+||+|||++++.++..++.+++ +.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 4567999999999999999999999987655 4445443
No 168
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00045 Score=64.42 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
|.-|+|.|+||+|||++|+.++..++.+++ +..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHHH
Confidence 457999999999999999999999987764 5555543
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.91 E-value=0.0025 Score=65.40 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
|..+..-++|.|+||+|||++|..+|..+ +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34444469999999999999999998654 5688888753
No 170
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.88 E-value=0.00091 Score=62.19 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
.+.-+.|.|++|+|||++++.++..+ |.|++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568999999999999999999987 999998876544
No 171
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.84 E-value=0.00072 Score=64.17 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
++-++|.|+||+|||++|+.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877664
No 172
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.84 E-value=0.00066 Score=67.53 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
-++|.||||+|||++|+++|++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48899999999999999999999998876654
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.0006 Score=62.62 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+-++|.|+||+|||++|+.+|..++.+++. ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 358999999999999999999999987664 444443
No 174
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.82 E-value=0.00054 Score=62.30 Aligned_cols=29 Identities=34% Similarity=0.630 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
-++|.||||+|||++|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888887653
No 175
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.0006 Score=63.84 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.-++|.|+||+|||++++.+|..++.+++ +..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 446999999999999999999999988765 4445444
No 176
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00082 Score=64.73 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.+.-++|.|+||+|||++++.+|..++.+++ +..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEE--ehhHHHH
Confidence 3457999999999999999999999998765 4444443
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.80 E-value=0.00061 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
|.-++|.|+||+|||++|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999999987
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.79 E-value=0.0051 Score=59.19 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=64.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEee---ch------hHHHHhh-----------------hhhhhHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS---GS------EFVEMFV-----------------GVGASRVRDLF 316 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is---~s------~~~~~~v-----------------G~~~~~vr~lF 316 (582)
.+++|+++|.|||++|-++|-++ |.++..+. +. .+.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58999999999999999997765 77777773 21 2333331 00122344455
Q ss_pred HHHhh----CCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccccccccCCCCc
Q 007989 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (582)
Q Consensus 317 ~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD~aLlrpgRF 392 (582)
+.+++ ....+|++||+-....-.- -..+ .+.+++. ....+.-||.|+|.+ ++.|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~-------l~~~-ev~~~l~-----~Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY-------LPLE-EVISALN-----ARPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS-------SCHH-HHHHHHH-----TSCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC-------CCHH-HHHHHHH-----hCcCCCEEEEECCCC---cHHHHH--hC
Confidence 55543 4568999999954321110 0111 2333333 223456777787763 344544 45
Q ss_pred cceeec
Q 007989 393 DRQVTV 398 (582)
Q Consensus 393 dr~I~i 398 (582)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 554444
No 179
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.77 E-value=0.0046 Score=63.48 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh---h
Q 007989 239 AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---V 305 (582)
Q Consensus 239 ~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~---v 305 (582)
+++.+.+.+..+-.+..--.+....|+-+++.||+|+|||+++..+|..+ +..+..+++..+.. .+ .
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 45555554443222221011223456779999999999999999998864 55666666543211 11 0
Q ss_pred h----------hhhhHHHHHHHHHhhCCCeEEEEeCCC
Q 007989 306 G----------VGASRVRDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 306 G----------~~~~~vr~lF~~A~~~~P~ILfIDEID 333 (582)
+ .......+.+..+....|.+|+||+.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 1 111112334555666778899999874
No 180
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.75 E-value=0.00066 Score=65.82 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.|.-++|.|+||+|||++++.+|.+++.+++ +.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~~~~ 43 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL--SSGDLLR 43 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE--EHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE--echHHHH
Confidence 3457999999999999999999999987765 4444443
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.75 E-value=0.00056 Score=63.70 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAI 284 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAl 284 (582)
.-+.|.||+|+|||+|++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999953
No 182
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.74 E-value=0.00069 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
|.-|+|.|+||+|||++|+.++..++.+++ +..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 456999999999999999999999986654 5555543
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00076 Score=62.78 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
..++|.|+||+|||++++.+|..++.+++ +..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 35899999999999999999999987654 444444
No 184
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.74 E-value=0.00076 Score=64.61 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
.|+|.||||+|||++|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998877644
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.73 E-value=0.00088 Score=64.60 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+..|+|.|+||+|||++|+.+|..++.+++. ..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 3469999999999999999999999987664 444443
No 186
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00083 Score=64.27 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
.|+|.||||+|||++|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887643
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.70 E-value=0.00085 Score=66.21 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.|.-|+|.||||+|||++|+.++.+.+.+++ +.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 4567999999999999999999999987665 4445443
No 188
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.69 E-value=0.00097 Score=65.20 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+.|+-|+|.||||+||+|.|+.||...+.+. ++..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 4466799999999999999999999998765 55566554
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.69 E-value=0.0009 Score=61.19 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.|+|.|+||+|||++|+.++..++.+++. ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHH
Confidence 48999999999999999999999988764 444443
No 190
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.00091 Score=63.32 Aligned_cols=37 Identities=16% Similarity=0.393 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
++-|+|.|+||+|||++++.++.+++.+++ +.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i--~~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE--eHHHHHH
Confidence 456999999999999999999999987665 4445543
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.00097 Score=61.98 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
.-++|.|+||+|||++++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999876
No 192
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.65 E-value=0.0013 Score=64.25 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
+..|+|.|+||+|||++|+.+|.+++.+++. ..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 3469999999999999999999999977654 445443
No 193
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.60 E-value=0.0025 Score=60.51 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKK 318 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~ 318 (582)
.-+.|.||+|+|||++++.+++ +|.+++ ++.++.......+...+..+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~~~~~~~~~~~~~~i~~~ 53 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVAREVVAKDSPLLSKIVEH 53 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHHHHTTCSSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHHHHHccCChHHHHHHHHH
Confidence 3588999999999999999998 788775 55555433222222334444443
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.58 E-value=0.001 Score=64.15 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.|.-|+|.||||+|||++++.+|..++.++ ++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHH
Confidence 345799999999999999999999998755 4554544
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.56 E-value=0.001 Score=66.66 Aligned_cols=66 Identities=23% Similarity=0.395 Sum_probs=42.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhH--H---------HHhhhhhhhHHHHHHHHHhhCCCeEEEEe
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF--V---------EMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~--~---------~~~vG~~~~~vr~lF~~A~~~~P~ILfID 330 (582)
-++|.||+|+|||++.+++++.. ...++. ..... . ...++.....++..+..+....|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 58999999999999999998854 222222 21110 0 00111122345667777767789999999
Q ss_pred CC
Q 007989 331 EI 332 (582)
Q Consensus 331 EI 332 (582)
|.
T Consensus 106 Ep 107 (261)
T 2eyu_A 106 EM 107 (261)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 196
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.56 E-value=0.0015 Score=60.74 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~ 301 (582)
-|+|.|+||+|||++++.++..++ .++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999775 446666655443
No 197
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.55 E-value=0.0028 Score=60.60 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=32.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV 307 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~ 307 (582)
-+.|+|++|||||++++.++..+|+|++ ++.++.....+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~~ 53 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLEE 53 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHHH
Confidence 4889999999999999999998887765 566666554443
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.54 E-value=0.0017 Score=59.98 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
.-++|.||||+|||++++.+++..|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 46899999999999999999998886654 44443
No 199
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.53 E-value=0.0016 Score=61.91 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
+.-+.|.||+|+|||++++.+++..|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 44699999999999999999999987654 455544
No 200
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.52 E-value=0.0024 Score=60.68 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
.+.-+.|.||+|+|||++++++|+.+ |...+++++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34568999999999999999999987 555456666544
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.51 E-value=0.0025 Score=67.20 Aligned_cols=72 Identities=25% Similarity=0.444 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEeech-hHH--H--Hh-----hhhhhhHHHHHHHHHhhCCCeEE
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGS-EFV--E--MF-----VGVGASRVRDLFKKAKENAPCIV 327 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~s-~~~--~--~~-----vG~~~~~vr~lF~~A~~~~P~IL 327 (582)
.....++|.||+|+|||++++++++... ..++.+... ++. . .+ +|.....++..+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3344689999999999999999988542 333332211 000 0 00 11122344667777777889999
Q ss_pred EEeCCC
Q 007989 328 FVDEID 333 (582)
Q Consensus 328 fIDEID 333 (582)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.51 E-value=0.023 Score=61.06 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH----------Hhhhh----------hhhHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----------MFVGV----------GASRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~----------~~vG~----------~~~~vr~lF~~A 319 (582)
.|+-+++.||+|+|||+++..+|..+ +..+..+++.-+.. ...+. ........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46779999999999999999998754 66777666542211 00111 111234456666
Q ss_pred hhCCCeEEEEeCCCcc
Q 007989 320 KENAPCIVFVDEIDAV 335 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l 335 (582)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667889999987543
No 203
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.49 E-value=0.007 Score=66.02 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
|.....-++|.|+||+|||++|..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44445569999999999999999997754 5688888764
No 204
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.48 E-value=0.0016 Score=67.40 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
++.++|+||+|+|||++|+.+|.+.+.+++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4579999999999999999999999987777654
No 205
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.45 E-value=0.0065 Score=58.36 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHH--hcCCCEEEeech---hHHHHh---hhh-----hhhHHHHHHHHHhhCCCeEEEEe
Q 007989 265 KGVLLVGPPGTGKT-LLAKAIAG--EAGVPFFSISGS---EFVEMF---VGV-----GASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 265 kgvLL~GPpGTGKT-~LArAlA~--e~~~pfi~is~s---~~~~~~---vG~-----~~~~vr~lF~~A~~~~P~ILfID 330 (582)
+=.++|||.|+||| .|.+++.+ +.+..++++..+ .+.+.+ .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 35889999999999 89999855 457788887644 221111 111 0111223343332 24699999
Q ss_pred CCCcc
Q 007989 331 EIDAV 335 (582)
Q Consensus 331 EID~l 335 (582)
|++-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 206
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.44 E-value=0.0023 Score=59.47 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (582)
-+.|.|+||+|||++++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 89988764
No 207
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.43 E-value=0.01 Score=65.19 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH----HHHh--hh----------------------hhhh
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VEMF--VG----------------------VGAS 310 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~----~~~~--vG----------------------~~~~ 310 (582)
....-++|.||||+|||+|++.++... |.+++++...+- .... .+ .+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 334458999999999999999998754 456666654321 1100 00 1223
Q ss_pred HHHHHHHHHhhCCCeEEEEeCCCcc
Q 007989 311 RVRDLFKKAKENAPCIVFVDEIDAV 335 (582)
Q Consensus 311 ~vr~lF~~A~~~~P~ILfIDEID~l 335 (582)
..+.++..+....|.+|+||=+..+
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHH
Confidence 4556677777788999999955555
No 208
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0019 Score=62.49 Aligned_cols=35 Identities=34% Similarity=0.602 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
-++|.||||+||+|.|+.+|+..+++.+ |..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 3789999999999999999999987654 5555543
No 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.41 E-value=0.013 Score=69.29 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
+|.++.+++|.+.+.... ..+-+.|+||.|.|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899999998888775321 1346899999999999999999863
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.40 E-value=0.00062 Score=71.38 Aligned_cols=52 Identities=19% Similarity=0.387 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 235 G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
.++...+.+.+.+.....+.. ...++|+||||+|||++++++|+.++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~--------~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY--------RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS--------CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC--------eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 445556665555554322211 1269999999999999999999999888855
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.003 Score=60.19 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
|.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 359999999999999999997653
No 212
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.39 E-value=0.002 Score=66.72 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=47.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechh-HH-----HH--hhhhhhhHHHHHHHHHhhCCCeEEEEeCCCc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FV-----EM--FVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~-~~-----~~--~vG~~~~~vr~lF~~A~~~~P~ILfIDEID~ 334 (582)
.+++.||+|+|||+|++++++... .-.+.+.... +. .. ++..+..+.+..+..|....|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 699999999999999999998753 2234444321 10 00 1100234567788888888999999999743
No 213
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.37 E-value=0.0022 Score=61.55 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
.++|.|+||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999877543
No 214
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.36 E-value=0.0023 Score=61.48 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.-+.|.||+|+||||+++.+++.++++++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 36899999999999999999999997765 444443
No 215
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.35 E-value=0.0026 Score=59.96 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEee
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSIS 296 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is 296 (582)
++-|.|.|+||+|||++++.++..+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 57887665
No 216
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.31 E-value=0.015 Score=59.29 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhhc-CCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechh
Q 007989 238 EAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 299 (582)
Q Consensus 238 ~~k~~L~e~v~~l~~p~~~~~~g-~~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~ 299 (582)
.+++.+.+.+..+-.+.. ... ...++-++|.||+|+|||+++..+|..+ |..+..+++..
T Consensus 80 ~~~~~~~~~l~~~l~~~~--~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 80 NVVGKLQEILCDMLPSAD--KWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp THHHHHHHHHHTTSCCGG--GSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCcc--cccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 355556555544332221 111 2245679999999999999999998743 55777776543
No 217
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.31 E-value=0.0049 Score=58.26 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
-+.|.|++|+|||++++.+++ .|++++. +.++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 489999999999999999999 8877654 4555443
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.30 E-value=0.0073 Score=65.11 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
|..+..-++|.|+||+|||++|..+|..+ |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44444569999999999999999987654 7788888754
No 219
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.28 E-value=0.0023 Score=60.00 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
-+.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 220
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0035 Score=61.89 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCC--------EEEeechhHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEFVE 302 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~p--------fi~is~s~~~~ 302 (582)
.|.-|.|.|++|+|||++|+.++..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34569999999999999999999998877 34677777653
No 221
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0032 Score=59.41 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
-+.|.|++|+|||++++.+|+.++.+++. ..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d--~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec--cchHH
Confidence 58999999999999999999999988764 44444
No 222
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.24 E-value=0.0034 Score=58.69 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEee
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (582)
|.|.|++|+||||+++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99987654
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.22 E-value=0.012 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
..-+.|.||+|+|||+|.+++++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999998753
No 224
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.21 E-value=0.0028 Score=61.47 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
-++|.|+||+|||++++.++..++.+++ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHHH
Confidence 3899999999999999999999987654 4445443
No 225
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.18 E-value=0.0034 Score=58.98 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
|.-|.|.|++|+|||++++.+|.. |.+++ +..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 456999999999999999999998 87765 55555543
No 226
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.021 Score=62.60 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=61.7
Q ss_pred CceEEEEcCCCCcHHHHHHH--HHHhc--CCCEEEeechhHHHH------hhhh--------------------------
Q 007989 264 PKGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSISGSEFVEM------FVGV-------------------------- 307 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArA--lA~e~--~~pfi~is~s~~~~~------~vG~-------------------------- 307 (582)
..-++|.||+|+|||+|++. +++.. +-..+++++.+.... .+|.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l 118 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVV 118 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhh
Confidence 34699999999999999999 44432 445666665432110 0000
Q ss_pred ----hhhHHHHHHHHHhhCCCeEEEEeCCCcccccCCCCCCCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCccccc
Q 007989 308 ----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (582)
Q Consensus 308 ----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~L 382 (582)
................|.+|+|||.-++...- +.+......+..++..+.. .++.||.+|...+.+
T Consensus 119 ~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 119 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ----IGATTVMTTERIEEY 188 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSSS
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCCc
Confidence 00112223334445678899999997763220 1122344556666666532 245666667665543
No 227
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.10 E-value=0.023 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.+++.+|+|+|||+++-..+.+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999998887664
No 228
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.08 E-value=0.004 Score=61.02 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
|.-+.|.||||+||||+++.++..+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5579999999999999999999998876543
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.08 E-value=0.0055 Score=58.30 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
..++-++|.||||+|||++++.++...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456799999999999999999999874
No 230
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.05 E-value=0.0052 Score=57.91 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~p--fi~ 294 (582)
+.-|+|.|+||+|||++++.++..++.+ ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999988763 544
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.03 E-value=0.0043 Score=61.30 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
|..+.|.||||+|||++++.+|+.++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 457999999999999999999999987664 44444
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0069 Score=56.50 Aligned_cols=38 Identities=32% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
.+.-++|.|+||+|||++++.+|..+ +.++..+++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 34568999999999999999999876 455666665444
No 233
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.02 E-value=0.016 Score=60.24 Aligned_cols=38 Identities=24% Similarity=0.125 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
|..+..-++|.|+||+|||+||..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444469999999999999999997763 778887775
No 234
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.00 E-value=0.0021 Score=61.01 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~p 291 (582)
.++-|+|.|+||+|||++++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35579999999999999999999987544
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.97 E-value=0.0095 Score=57.28 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.++-+.|.||+|+|||+|++++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998764
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.96 E-value=0.0065 Score=58.16 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
+.-+.|.||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44689999999999999999998763
No 237
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.93 E-value=0.015 Score=65.20 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+++.||||||||+++.++...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 6999999999999988877543
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0039 Score=62.15 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
.+.|.|++|+|||++++.+|+.++.+|+. ...+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d--~d~~~~ 84 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD--CDTLIE 84 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEe--CcHHHH
Confidence 69999999999999999999999987764 344443
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.92 E-value=0.0059 Score=58.40 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~ 301 (582)
+.-++|.|+||+|||++++.+++.+ |.+++.+++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4568999999999999999999865 5678888866554
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.92 E-value=0.0037 Score=65.03 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
++-++|.||+|+|||+|+..||.+++.+++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3469999999999999999999999888776554
No 241
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.88 E-value=0.0025 Score=60.44 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
|.-|+|.|+||+|||++++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55799999999999999999998764
No 242
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.87 E-value=0.02 Score=54.67 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH---H----Hhhhhh-----hhHHHHHHHHHhhCCCeEEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV---E----MFVGVG-----ASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~---~----~~vG~~-----~~~vr~lF~~A~~~~P~ILfI 329 (582)
+-.+++||+|+|||+.+-.++.++ +..++.+...--. + ...|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 357889999999999888887765 6666665421100 0 011110 0112355555432 3469999
Q ss_pred eCCCcc
Q 007989 330 DEIDAV 335 (582)
Q Consensus 330 DEID~l 335 (582)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0086 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+-+.|.||+|+|||+|++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.81 E-value=0.014 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
+.-+.|.||+|+|||||++.+++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999999764
No 245
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.76 E-value=0.016 Score=57.03 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
-+-|.||||+|||++|+.++..++++++ +..++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 3678899999999999999999998876 4445443
No 246
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.76 E-value=0.0055 Score=63.06 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
.|+-++|.||+|+|||+||..+|.+.+.+++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45678999999999999999999999877766554
No 247
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.75 E-value=0.0051 Score=61.89 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~~~~ 302 (582)
|+-++|.|+||+|||++|+.++.+. +. ..++...+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHHH
Confidence 4568999999999999999999864 54 4455544443
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.01 Score=59.76 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~ 303 (582)
|.-|.|.|+||+|||++|+.++ +.|.++ +++.++...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~~ 111 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGHR 111 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHHH
Confidence 4569999999999999999999 678765 556666543
No 249
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.007 Score=57.82 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
|..+.|.|++|+|||++++.++..+|.+++. ..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~--~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD--TGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec--CChHH
Confidence 3469999999999999999999999987654 44443
No 250
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.70 E-value=0.026 Score=62.07 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF 304 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~~~ 304 (582)
|.-|+|+|.||+|||++|+.+|..+ +.+...++..++....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4468999999999999999999987 5566667777765543
No 251
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.69 E-value=0.0049 Score=58.56 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEeechhH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEF 300 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-~~pfi~is~s~~ 300 (582)
.-+.|.|+||+|||++++.+++.. ++++ ++..++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~--i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEE--EEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEE--EeCCcc
Confidence 458899999999999999999987 5544 444443
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.67 E-value=0.0067 Score=58.08 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~ 302 (582)
|.-+.|.|++|+|||++++.++. +|.+++ +..++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~~ 39 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIAR 39 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHHH
Confidence 44689999999999999999998 777655 4555443
No 253
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.66 E-value=0.059 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA 285 (582)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998766653
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.60 E-value=0.0088 Score=58.25 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
.+.-+.|.|++|+|||++++.+|+.+|++++ +..++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 3446899999999999999999999998765 444444
No 255
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.60 E-value=0.048 Score=51.06 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKA 283 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArA 283 (582)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999987433
No 256
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.60 E-value=0.015 Score=61.96 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~ 300 (582)
.|.-|+|+|+||+|||++|+.++.+.+.++ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 355699999999999999999999987654 454444
No 257
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.50 E-value=0.0092 Score=59.01 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
-+.|.||+|+|||++++.+|..+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 5899999999999999999999998665
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.48 E-value=0.025 Score=53.60 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
+.-+.|.||+|+|||++++.+++.+ +.+++..+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4468999999999999999999865 667776655443
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.47 E-value=0.012 Score=54.84 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~ 301 (582)
-+.|.||+|+|||++++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999986543 2456666554
No 260
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.45 E-value=0.024 Score=63.73 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~ 300 (582)
+.-|+|.|.||+|||++|++++..+ |.+++.+++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 4569999999999999999999998 999999886554
No 261
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.37 E-value=0.0059 Score=67.09 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=45.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeechh-HHH---Hh--------hhhhhhHHHHHHHHHhhCCCeEEEEe
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVE---MF--------VGVGASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s~-~~~---~~--------vG~~~~~vr~lF~~A~~~~P~ILfID 330 (582)
.++++.||+|+||||+++++++... ...+.+.... +.- .. ++...-.+.+++..+....|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 3699999999999999999998763 2344444322 110 00 01112235566777777889999999
Q ss_pred CCC
Q 007989 331 EID 333 (582)
Q Consensus 331 EID 333 (582)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.32 E-value=0.01 Score=55.78 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
+.-+.|.||+|+|||++++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468999999999999999999876
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.29 E-value=0.0097 Score=62.00 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is 296 (582)
+-++|.||+|+|||++|+.+|..++++++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986555443
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.01 Score=61.25 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~is~ 297 (582)
+-++|.||+|+|||+||..+|...+.+++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 358899999999999999999998766655443
No 265
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.23 E-value=0.0092 Score=57.64 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
.++++|.||+|+|||+||..++.+.+ +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 45899999999999999999998866 55543
No 266
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.22 E-value=0.012 Score=56.40 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
-|.|.|++|||||++++.+|..+|.||+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5899999999999999999999999987
No 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.21 E-value=0.042 Score=58.73 Aligned_cols=94 Identities=20% Similarity=0.318 Sum_probs=52.3
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeech-hHH-
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGS-EFV- 301 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s-~~~- 301 (582)
..+++++.-..+.+..+.++ +..+. .-+++.||+|+||||+.+++++... ..++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l---~~~~g----------gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL---IKRPH----------GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH---HTSSS----------EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHH---HHhcC----------CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 46777775444444444444 22221 1479999999999999999998763 233333211 110
Q ss_pred H----Hhhh-hhhhHHHHHHHHHhhCCCeEEEEeCCC
Q 007989 302 E----MFVG-VGASRVRDLFKKAKENAPCIVFVDEID 333 (582)
Q Consensus 302 ~----~~vG-~~~~~vr~lF~~A~~~~P~ILfIDEID 333 (582)
. ..+. ...-...+.+..+....|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000 001123344555566789999999863
No 268
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.14 E-value=0.064 Score=62.82 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~ 286 (582)
..-++|.||.|+|||++.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34699999999999999999874
No 269
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.08 E-value=0.069 Score=54.11 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-----~~pfi~is 296 (582)
+.+++.+|+|+|||+.+-..+.+. +...+.+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 579999999999998876554432 44455544
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.02 E-value=0.019 Score=54.57 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
++-+.|.||+|+|||+|++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998865
No 271
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.96 E-value=0.013 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
+.-+.|.||+|+|||||++.+++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999999876
No 272
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.89 E-value=0.17 Score=47.26 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LAr 282 (582)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997554
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.86 E-value=0.017 Score=58.70 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEEe-echhHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSI-SGSEFV 301 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~~-----pfi~i-s~s~~~ 301 (582)
..|.-+.|.||+|+|||++++.+++.++. +.+.+ +..+|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 44567899999999999999999887642 33444 666553
No 274
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.84 E-value=0.035 Score=59.58 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
.|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999998865 4667777664
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.83 E-value=0.017 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999999975
No 276
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.78 E-value=0.052 Score=59.42 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
..|+.|+++|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999998654 667777776
No 277
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.76 E-value=0.29 Score=46.26 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=33.0
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcCC---CCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~---~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
.+|+|+.-.++..+.+.+. .+..+..++....+ ..+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688875445555544431 13334334322111 1256999999999999876655543
No 278
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.76 E-value=0.056 Score=52.59 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=38.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechh--------HHHHhhhhh-----hhHHHHHHHHHhhCCCeEEEEe
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE--------FVEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~--------~~~~~vG~~-----~~~vr~lF~~A~~~~P~ILfID 330 (582)
.+++||.|+|||+.+-.++.++ +..++.+...- +.+. .|.. .....++++.+. ....+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 5689999999999888886644 67777664221 1111 1110 001123343333 235699999
Q ss_pred CCCcc
Q 007989 331 EIDAV 335 (582)
Q Consensus 331 EID~l 335 (582)
|+..+
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99987
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.75 E-value=0.017 Score=54.05 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
+-+.|.||+|+|||++++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 280
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=94.67 E-value=0.077 Score=45.31 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCccccHHHHH-HHHhcCCeeEEEEeeCceEEEEEecCccCCCceeEEEEEcCCCcHHHHHHHHhc
Q 007989 92 SSSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREK 156 (582)
Q Consensus 92 ~~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (582)
...+|||++|. ++|++|.|++|.+.++. .+.+...+.........+.+.++. .+.+.+.|++.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~-~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~a 77 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKR-FVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLETL 77 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTT-EEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCC-EEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHHH
Confidence 45689999999 79999999999887544 333333322211112335667773 45677777553
No 281
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.67 E-value=0.24 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|+|.|.||+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999764
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.65 E-value=0.1 Score=56.05 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeechhHHH----H---h---hh---------hh-hhHHHHHHH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE----M---F---VG---------VG-ASRVRDLFK 317 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s~~~~----~---~---vG---------~~-~~~vr~lF~ 317 (582)
..|+.++++|++|+|||+++-.+|..+ |..+..+++.-+.. . + .+ .. ...+++.++
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999997643 77888877763221 0 0 00 01 122356677
Q ss_pred HHhhCCCeEEEEeCCCc
Q 007989 318 KAKENAPCIVFVDEIDA 334 (582)
Q Consensus 318 ~A~~~~P~ILfIDEID~ 334 (582)
.++.....+++||=.-.
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 76655567999987533
No 283
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.65 E-value=0.062 Score=55.31 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeech
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s 298 (582)
...++-++++||+|+|||+++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456779999999999999999998754 5666666653
No 284
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.63 E-value=0.017 Score=61.59 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i 295 (582)
++-++|.||+|+|||+||..+|...+..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 34688999999999999999999988766544
No 285
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.53 E-value=0.097 Score=50.32 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=30.2
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LAr 282 (582)
..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34688875445555444321 1233333332111 123579999999999998643
No 286
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.51 E-value=0.023 Score=53.84 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEeechh
Q 007989 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (582)
Q Consensus 267 vLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~ 299 (582)
+|++|++|+|||++|..++.. +.|.+|+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88988887654
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.49 E-value=0.083 Score=54.59 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999999864
No 288
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.49 E-value=0.15 Score=57.17 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeech
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~s 298 (582)
-.|+.||||||||+++-.+... .+.+++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3799999999999765444332 26677766654
No 289
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.47 E-value=0.051 Score=62.57 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..+++.||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977777554
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.43 E-value=0.11 Score=61.01 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~ 286 (582)
.-++|.||.|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999943
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.42 E-value=0.077 Score=53.86 Aligned_cols=73 Identities=27% Similarity=0.266 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH----H---Hh---hh---------hhh-hHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG---------VGA-SRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~----~---~~---vG---------~~~-~~vr~lF~~A 319 (582)
.++-+.++|++|+|||+++..+|... +..+..+++.-.. . .+ .+ ..+ ...+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998754 5566665542110 0 00 00 011 2235566666
Q ss_pred hhCCCeEEEEeCCCcc
Q 007989 320 KENAPCIVFVDEIDAV 335 (582)
Q Consensus 320 ~~~~P~ILfIDEID~l 335 (582)
+...+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5556789999997544
No 292
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.42 E-value=0.11 Score=49.23 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LA 281 (582)
..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 35688875445555544332 1333433333211 12357999999999999873
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.36 E-value=0.023 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-Hhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIA-GEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA-~e~ 288 (582)
..-+.|.||+|+|||++++.++ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3458899999999999999999 764
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.36 E-value=0.1 Score=56.90 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=26.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEe
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSI 295 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~i 295 (582)
..+.-+.|.||+|+||||+++.||+.+ +..+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 345568999999999999999999864 3444443
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.28 E-value=0.21 Score=51.85 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
+.-+.|+|+||+|||+++.+++..+ +..+..+++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3468999999999999999998764 555555544
No 296
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.22 E-value=0.084 Score=58.70 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=33.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~s~~~~ 302 (582)
+.-|+|.|+||+|||++|++++..++ .+++.++...+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45689999999999999999999875 8888888766543
No 297
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.20 E-value=0.066 Score=51.22 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=31.5
Q ss_pred cCCCCcccccccchH-HHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHHH
Q 007989 224 PNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 224 ~~~~~~f~dI~G~d~-~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LAr 282 (582)
+.+..+|+|..+..+ ..+.+.+. .+..|..++.... ...+.+++.+|+|+|||..+-
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 344567888655543 33333221 1334444443211 123579999999999997644
No 298
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.19 E-value=0.11 Score=58.81 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHh---cCCCEEEee
Q 007989 264 PKGVLLVGPPGTGKTLLAK-AIAGE---AGVPFFSIS 296 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LAr-AlA~e---~~~pfi~is 296 (582)
.+.+++.||+|+|||+.+. ++... .+...+++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4689999999999998873 33221 245555554
No 299
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.17 E-value=0.071 Score=54.24 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHH----H---Hh---hh----------hhhhHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG----------VGASRVRDLFKKAK 320 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~----~---~~---vG----------~~~~~vr~lF~~A~ 320 (582)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+. + .+ .+ .....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999999998755 6677766654211 0 00 00 01122345666666
Q ss_pred hCCCeEEEEeCCCcc
Q 007989 321 ENAPCIVFVDEIDAV 335 (582)
Q Consensus 321 ~~~P~ILfIDEID~l 335 (582)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999975443
No 300
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.16 E-value=0.14 Score=55.27 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~~ 302 (582)
|.-|+|.|.||+|||++++.++..++ .+...++..++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 44699999999999999999998764 4556666554443
No 301
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.13 E-value=0.022 Score=57.76 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEeechhHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~---~pfi~is~s~~~ 301 (582)
.-|.|.||+|+|||++|+.++..++ ..+..+++.+|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3589999999999999999998765 445666766654
No 302
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.12 E-value=0.17 Score=52.18 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCC---CCceEEEEcCCCCcHHHHHHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~---~pkgvLL~GPpGTGKT~LArAlA 285 (582)
...+|+|+.=.++..+.|.+. -+..+..++....+ ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 346788886555555544331 12233333322111 12479999999999998665443
No 303
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.09 E-value=0.083 Score=51.14 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=31.8
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKA 283 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LArA 283 (582)
+..+|+++.=.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 346799885444444444321 1333444443211 1235799999999999976433
No 304
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.08 E-value=0.16 Score=54.16 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeech-hHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV 301 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s-~~~ 301 (582)
.++|.+|+|+|||..+-.++...+.+++.+... .+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 599999999999999988888888888877655 444
No 305
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.07 E-value=0.062 Score=52.09 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=36.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEeechhHHHHhhhhhhhHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA 319 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~is~s~~~~~~vG~~~~~vr~lF~~A 319 (582)
.|-|+|..|||||++++.++. .|+|++ ++..+....+..+...+..+++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~~~~~~~~~~i~~~f 61 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRITAPAGLAMPAIEQTF 61 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHhcCCcHHHHHHHHHh
Confidence 689999999999999999998 888875 556655554433333444444433
No 306
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.06 E-value=0.028 Score=54.88 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
-|.+.|++|||||++++.+|..+|.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999854
No 307
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.05 E-value=0.047 Score=53.39 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAGVP 291 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~~p 291 (582)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 48899999999999999999987654
No 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.04 E-value=0.088 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||+|+|||||.+.+++-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4889999999999999999884
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.02 E-value=0.03 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|++.+++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999976
No 310
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.01 E-value=0.054 Score=55.27 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455678999999999999999999865
No 311
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.94 E-value=0.13 Score=49.86 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LAr 282 (582)
+.+++.+|+|+|||+.+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 479999999999998754
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.90 E-value=0.21 Score=53.40 Aligned_cols=72 Identities=26% Similarity=0.241 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH-------Hh---hh---------hh-hhHHHHHHHHH
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG---------VG-ASRVRDLFKKA 319 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~-------~~---vG---------~~-~~~vr~lF~~A 319 (582)
.|..+++.|++|+|||+++..+|..+ +..+..+++.-+.. .+ .+ .. ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999998755 55666666532111 10 00 01 12225566666
Q ss_pred hhCCCeEEEEeCCCc
Q 007989 320 KENAPCIVFVDEIDA 334 (582)
Q Consensus 320 ~~~~P~ILfIDEID~ 334 (582)
+.....+++||=.-.
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 545557889886533
No 313
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.90 E-value=0.11 Score=58.70 Aligned_cols=33 Identities=39% Similarity=0.466 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-Hhc--CCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIA-GEA--GVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA-~e~--~~pfi~is~ 297 (582)
+.+++.+|+|+|||+.+-..+ ... +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 479999999999999884332 222 455665553
No 314
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.84 E-value=0.15 Score=48.98 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=30.1
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LA 281 (582)
+..+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 446788875444455444321 1333433432211 12357999999999999764
No 315
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.83 E-value=0.067 Score=52.15 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=36.9
Q ss_pred eEEEEcCCCCcHHH-HHHHH--HHhcCCCEEEeech-hH------HHHhhhhh-----hhHHHHHHHHHhhCCCeEEEEe
Q 007989 266 GVLLVGPPGTGKTL-LAKAI--AGEAGVPFFSISGS-EF------VEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (582)
Q Consensus 266 gvLL~GPpGTGKT~-LArAl--A~e~~~pfi~is~s-~~------~~~~vG~~-----~~~vr~lF~~A~~~~P~ILfID 330 (582)
-.+++||.|+|||+ |.+.+ +.+.+..++.+... +- +..-.|.. .....++++.. .....+|+||
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~ID 108 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGID 108 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEe
Confidence 36889999999999 55555 23446666555421 10 00001110 01112333322 2346799999
Q ss_pred CCCcc
Q 007989 331 EIDAV 335 (582)
Q Consensus 331 EID~l 335 (582)
|++.+
T Consensus 109 EaQFf 113 (219)
T 3e2i_A 109 EVQFF 113 (219)
T ss_dssp CGGGS
T ss_pred chhcC
Confidence 99998
No 316
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.81 E-value=0.27 Score=56.74 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
.-++|+||.|+|||++.|.++.-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46999999999999999999863
No 317
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.81 E-value=0.045 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||+|++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999976
No 318
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.76 E-value=0.18 Score=49.70 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeech-------hHHHHhhhhh-----hhHHHHHHHHHhhCCCeEEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGS-------EFVEMFVGVG-----ASRVRDLFKKAKENAPCIVFV 329 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~s-------~~~~~~vG~~-----~~~vr~lF~~A~~~~P~ILfI 329 (582)
+-.+++||.|+|||+.+-..+. ..|..++.+... ...+.. |.. .....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 3477889999999976665544 346666655421 111111 110 01112345555 33569999
Q ss_pred eCCCcc
Q 007989 330 DEIDAV 335 (582)
Q Consensus 330 DEID~l 335 (582)
||+..+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999887
No 319
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.76 E-value=0.038 Score=52.54 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
-+.|.||+|+|||+|++.+++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999763
No 320
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.72 E-value=0.06 Score=52.49 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEe
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSI 295 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~--~pfi~i 295 (582)
+.-+.|.||||+|||++++.+++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999875 566543
No 321
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.68 E-value=0.018 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 322
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.65 E-value=0.32 Score=50.43 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHHHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LArAlA 285 (582)
..+|+++.=.++..+.+.+. -+..|..++.... ...+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45788875445555544331 1333333332211 123579999999999997665443
No 323
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.63 E-value=0.16 Score=57.44 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH----hcCCCEEEee
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAG----EAGVPFFSIS 296 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~----e~~~pfi~is 296 (582)
.+.+++.||+|+|||+.+-..+- ..+...+++.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56899999999999999844322 1245555554
No 324
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.60 E-value=0.14 Score=52.81 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEeechhH
Q 007989 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF 300 (582)
Q Consensus 262 ~~pkgvLL~GPpGTGKT~LArAlA~e~~-----~pfi~is~s~~ 300 (582)
..|.-+.|.||+|+||||+++.+++.++ ..+..++...|
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4456789999999999999999998764 23555555544
No 325
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.55 E-value=0.21 Score=52.06 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeech
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~s 298 (582)
++++..|+|+|||..+-+++.+. +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 68999999999999988886654 5666666543
No 326
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.50 E-value=0.37 Score=55.50 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 238 ~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
.+++.+.++...+.. ..|..+|+.||+|+|||..+-..+-+. +...+.+..
T Consensus 372 ~Q~~ai~~I~~~l~~---------~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 372 AQKRAHQEIRNDMIS---------EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp HHHHHHHHHHHHHHS---------SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred HHHHHHHHHHhhccc---------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 345555555554433 235579999999999998876554433 556665554
No 327
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.49 E-value=0.13 Score=56.87 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=30.0
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 234 ~G~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
.-.+.+.+.+..+++.+... .+.+|+.+|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 34455666666666555332 236899999999999998777654
No 328
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.49 E-value=0.047 Score=55.93 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pf 292 (582)
++...-+.|+||+|+|||+|++.+++.....+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 33344699999999999999999998764333
No 329
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.49 E-value=0.048 Score=51.51 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pf 292 (582)
.+|+||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 358999999999999999999874 4433
No 330
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.46 E-value=0.073 Score=55.58 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEeech-hHH-----HH--hh-------hh-hhhHHHHHHHHHhhCCCeE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFV-----EM--FV-------GV-GASRVRDLFKKAKENAPCI 326 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~--~pfi~is~s-~~~-----~~--~v-------G~-~~~~vr~lF~~A~~~~P~I 326 (582)
..++|.||+|+|||+|++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998653 223333321 110 00 01 10 1224567777787788999
Q ss_pred EEEeCCCc
Q 007989 327 VFVDEIDA 334 (582)
Q Consensus 327 LfIDEID~ 334 (582)
++++|+..
T Consensus 256 ~l~~e~r~ 263 (361)
T 2gza_A 256 ILLAELRG 263 (361)
T ss_dssp EEESCCCS
T ss_pred EEEcCchH
Confidence 99999743
No 331
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.40 E-value=0.074 Score=55.69 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
...+.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455679999999999999999999865
No 332
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.35 E-value=0.18 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
+-.++.|+||||||++...++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45789999999999999888754
No 333
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.17 E-value=0.072 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999887643
No 334
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.16 E-value=0.28 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~ 286 (582)
+.+++.+|+|+|||..+-..+-
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999987654443
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.09 Score=48.40 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
...+++.|++|+|||+|..++.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 336
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.00 E-value=0.13 Score=56.80 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~----~pfi~is~s~~~~ 302 (582)
+..+.|.|++|+|||||++++|+.++ ..+..+++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 34689999999999999999999874 3566677776644
No 337
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.93 E-value=0.082 Score=64.43 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|+||+|+|||+|++.+.+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 358999999999999999998865
No 338
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.90 E-value=0.14 Score=56.47 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCCCcccccccchHHHHHHHHHHHHh--cCchhhhhhcCC-----CCceEEEEcCCCCcHHHHH
Q 007989 225 NTGVTFDDVAGVDEAKQDFMEVVEFL--KKPERFTAIGAR-----IPKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 225 ~~~~~f~dI~G~d~~k~~L~e~v~~l--~~p~~~~~~g~~-----~pkgvLL~GPpGTGKT~LA 281 (582)
..+++|+++........++.+.+..+ ..+..++...++ ..+.+++.+|+|+|||+.+
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 34567777653333334444444432 223333322111 3457999999999999853
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.87 E-value=0.1 Score=52.99 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
+.-+.|.||+|+|||||++.+++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 340
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.84 E-value=0.24 Score=54.83 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 358899999999999999998854
No 341
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.78 E-value=0.69 Score=49.71 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=23.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeec
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~ 297 (582)
.+++.+|+|+|||..+-..+.+. +..++.+..
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 69999999999998876665443 555665554
No 342
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.77 E-value=0.23 Score=54.12 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.4
Q ss_pred CceEEEEcCCCCcHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LA 281 (582)
.+.+++.+|+|+|||+.+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 458999999999999853
No 343
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.76 E-value=0.033 Score=55.06 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 293 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~-~~pfi 293 (582)
+.-|.|.|++|+|||++++.++..+ +.+++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998 44443
No 344
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.72 E-value=0.068 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
|+-+.+.|++|+|||++++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 345
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.66 E-value=0.26 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|.+.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999887653
No 346
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.65 E-value=0.91 Score=48.61 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeech
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~s 298 (582)
+.+++.+|+|+|||..+-..+.+. +..++.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 369999999999998876665443 5556666543
No 347
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.64 E-value=0.062 Score=50.96 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||++++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 348
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.59 E-value=0.15 Score=48.49 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKA 283 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArA 283 (582)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999986433
No 349
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.56 E-value=0.32 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|++.+++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 358999999999999999998854
No 350
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.56 E-value=0.26 Score=54.44 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeechhHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~s~~~~ 302 (582)
+.-++|.|+||+|||++|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999875 56778888766544
No 351
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.52 E-value=0.22 Score=48.14 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|+|.|++|+|||+|..++.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999999874
No 352
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.51 E-value=0.3 Score=56.08 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
..-++|.||.|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346899999999999999999863
No 353
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.49 E-value=0.38 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA 285 (582)
++.+++.+|+|+|||+.+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3689999999999998765443
No 354
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.45 E-value=0.36 Score=51.34 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHH---hcCCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLA-KAIAG---EAGVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LA-rAlA~---e~~~pfi~is 296 (582)
+.+|+.||+|+|||..+ -++.. ..+...+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 47999999999999875 43332 3344455444
No 355
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.40 E-value=0.083 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..-+.|.|++|+|||++++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4468999999999999999998763
No 356
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.34 E-value=0.19 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358999999999999999998854
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.24 E-value=0.086 Score=46.97 Aligned_cols=21 Identities=52% Similarity=0.947 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
-+++.|++|+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.24 E-value=0.082 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+.-+.|.||+|+|||||++.+++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34468899999999999999999865
No 359
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.22 E-value=0.4 Score=49.45 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=30.1
Q ss_pred CcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHHHHH
Q 007989 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAI 284 (582)
Q Consensus 228 ~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LArAl 284 (582)
.+|+++.=.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 4677765445555444331 1233333332211 12346999999999999875433
No 360
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.14 E-value=0.092 Score=57.56 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~ 290 (582)
+..|+|.|.+|+|||++|+++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 361
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.10 E-value=0.41 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||||+|||+|.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998754
No 362
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.04 E-value=0.44 Score=56.52 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIA 285 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA 285 (582)
.-++|+||.|+|||++.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 569999999999999999993
No 363
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.97 E-value=0.43 Score=46.94 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..|++.|++|+|||+|..++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998743
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.75 E-value=0.11 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 263 ~pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35578999999999999999999865
No 365
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.74 E-value=0.16 Score=48.93 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (582)
+-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 457888999999999999998866 56665543
No 366
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.71 E-value=0.47 Score=48.52 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCC---CCceEEEEcCCCCcHHHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~---~pkgvLL~GPpGTGKT~LAr 282 (582)
...+|+++.=.+...+.+... -+..+..++....+ ..+.+++.+|+|+|||..+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345788875444444444331 12333333332111 12579999999999998743
No 367
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.67 E-value=0.16 Score=47.97 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..+++.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998875
No 368
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.63 E-value=0.071 Score=51.33 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||.|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 369
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.73 Score=55.13 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
+.+|+++|+|+|||+.+-..+... +...+++..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 379999999999998876554433 555555554
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.56 E-value=0.085 Score=51.94 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||.|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999865
No 371
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.56 E-value=0.23 Score=48.92 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKA 283 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArA 283 (582)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3699999999999986543
No 372
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.53 E-value=0.2 Score=48.72 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LAr 282 (582)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999997543
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.53 E-value=0.4 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..-+.+.|+||+|||+++.+++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998754
No 374
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.51 E-value=0.07 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999865
No 375
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.48 E-value=0.07 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.48 E-value=0.071 Score=52.31 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||+|+|||+|.+.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998853
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.45 E-value=0.12 Score=48.34 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is 296 (582)
+-+.+.|++|+|||+++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998764 45555444
No 378
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.42 E-value=0.42 Score=53.45 Aligned_cols=109 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEe---------------------------------------------
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI--------------------------------------------- 295 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e~~~pfi~i--------------------------------------------- 295 (582)
.....-+.|.||.|+|||||.+.+++...-.-=.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Q ss_pred ------echhHHHHhhhhhhhHHHHHHH--------------------------HHhhCCCeEEEEeCCCcccccCCCCC
Q 007989 296 ------SGSEFVEMFVGVGASRVRDLFK--------------------------KAKENAPCIVFVDEIDAVGRQRGTGI 343 (582)
Q Consensus 296 ------s~s~~~~~~vG~~~~~vr~lF~--------------------------~A~~~~P~ILfIDEID~l~~~r~~~~ 343 (582)
...++..........++.++++ .|....|.+|++||--+-.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~L------- 252 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYL------- 252 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTC-------
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCC-------
Q ss_pred CCCChHHHHHHHHHHhhhcCccCCCCeEEEEecCcccccc
Q 007989 344 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (582)
Q Consensus 344 ~~~~~e~~~~L~~LL~~ld~~~~~~~viVIaaTN~~~~LD 383 (582)
+......+..++..+. ..+..||..|++.+.++
T Consensus 253 ---D~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 253 ---DVKQRLNAAQIIRSLL----APTKYVICVEHDLSVLD 285 (608)
T ss_dssp ---CHHHHHHHHHHHHGGG----TTTCEEEEECSCHHHHH
T ss_pred ---CHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHHHH
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.41 E-value=0.12 Score=47.57 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988664
No 380
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.19 E-value=0.11 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.|++|+|||+|.+.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
No 381
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.18 E-value=0.65 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|...+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 382
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.07 E-value=0.15 Score=49.93 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEee
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS 296 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~-------~~pfi~is 296 (582)
+-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 348888999999999999998876 66665443
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.06 E-value=0.11 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
No 384
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.88 E-value=0.23 Score=60.49 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+-|+||+|+|||+|++.+.+-.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 48899999999999999998743
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.84 E-value=0.095 Score=50.74 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998854
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.83 E-value=0.088 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
-+.|.||.|+|||||.+.+++-..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 387
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.82 E-value=0.59 Score=48.31 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCcccccccchHHHHHHHHHHHHhcCchhhhhhcC---CCCceEEEEcCCCCcHHHHH
Q 007989 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 227 ~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~---~~pkgvLL~GPpGTGKT~LA 281 (582)
-.+|+++.=.+...+.+... .+..|..++.... ...+.+++.+|+|+|||+.+
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 35688874334444433321 1333333332211 12357999999999999743
No 388
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.79 E-value=0.11 Score=51.24 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||.|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999985
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.79 E-value=0.13 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
No 390
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.79 E-value=0.086 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 391
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.79 E-value=0.49 Score=46.13 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAK 282 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LAr 282 (582)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998643
No 392
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.76 E-value=0.12 Score=53.67 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~p 291 (582)
..-+.|.||+|+|||||++.+++....+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999987543
No 393
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.73 E-value=0.097 Score=51.92 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 394
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.73 E-value=0.89 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|+|.|++|+|||+|..++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 395
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.65 E-value=0.14 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 396
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.56 E-value=0.1 Score=51.17 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 397
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.53 E-value=0.17 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
..+++.|++|+|||+|+.++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 398
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.50 E-value=0.1 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998854
No 399
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.49 E-value=0.099 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||.|+|||+|.+.+++-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999999865
No 400
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.47 E-value=0.11 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998864
No 401
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.45 E-value=0.11 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999843
No 402
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.45 E-value=0.12 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||.|+|||||.+.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.40 E-value=0.26 Score=47.77 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
++-+.+.|++|+|||++++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 346889999999999999999999876543
No 404
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.35 E-value=0.095 Score=51.06 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|.||.|+|||||.+.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 405
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.33 E-value=0.95 Score=47.86 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=29.5
Q ss_pred CCCcccccccchHHHHHHHHHHHHhcCchhhhhhcCC---CCceEEEEcCCCCcHHHHH
Q 007989 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 226 ~~~~f~dI~G~d~~k~~L~e~v~~l~~p~~~~~~g~~---~pkgvLL~GPpGTGKT~LA 281 (582)
+-.+|+++.-.+...+.+.+. -+..|..++....+ ..+.+++.+|+|+|||+..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 345788864334444433221 13334333332111 2357999999999999843
No 406
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.31 E-value=0.1 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999865
No 407
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.31 E-value=0.1 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48899999999999999999865
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.29 E-value=0.14 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 409
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.25 E-value=0.11 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||++.+++-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999865
No 410
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.23 E-value=0.17 Score=49.85 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCC
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVP 291 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~---~~p 291 (582)
++-|.|.|++|+|||++++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4568999999999999999998865 556
No 411
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.17 E-value=0.12 Score=51.29 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~~ 289 (582)
-+.|.||.|+|||||.+.+++-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998653
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.1 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
+.+.|.|++|+|||+|++.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 413
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.07 E-value=0.17 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999764
No 414
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.06 E-value=0.14 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
No 415
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.04 E-value=0.14 Score=53.58 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999843
No 416
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.01 E-value=0.16 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 417
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.95 E-value=0.12 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999865
No 418
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.94 E-value=0.15 Score=57.18 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=23.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeec
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~ 297 (582)
..++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57999999999999887775542 456665544
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.94 E-value=0.12 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
-++|.|++|+|||+|.+.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.92 E-value=0.14 Score=54.02 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48899999999999999999843
No 421
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.91 E-value=0.12 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998854
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.88 E-value=0.14 Score=53.50 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||+|+|||||.+.+|+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4889999999999999999984
No 423
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.86 E-value=0.14 Score=53.57 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999843
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.86 E-value=0.12 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998854
No 425
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.82 E-value=0.55 Score=42.92 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
..-+++.|++|+|||+|.+++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999764
No 426
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.79 E-value=1 Score=42.74 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-|++.|++|+|||+|+.++.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999764
No 427
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.78 E-value=0.13 Score=53.66 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAI 284 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAl 284 (582)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999854444
No 428
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.75 E-value=0.19 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|..++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 429
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.74 E-value=0.38 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+++.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358889999999999999998765
No 430
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.73 E-value=0.19 Score=44.60 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999764
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.73 E-value=0.62 Score=42.71 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 432
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.72 E-value=0.13 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.71 E-value=0.15 Score=53.63 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||+|+|||||.+.+|+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4889999999999999999984
No 434
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.64 E-value=0.16 Score=45.52 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|.+++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999753
No 435
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.62 E-value=0.15 Score=53.51 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48899999999999999999843
No 436
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.55 E-value=0.2 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998753
No 437
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.48 E-value=1.4 Score=42.89 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|+|.|++|+|||+|..++.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 438
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=89.43 E-value=2 Score=49.17 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~ 297 (582)
+.+++.+|+|+|||..+-..+.+. +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999998877665544 566666654
No 439
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.41 E-value=0.2 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 440
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=89.40 E-value=1.1 Score=53.11 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh---cCCCEEEeec
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e---~~~pfi~is~ 297 (582)
.+++.+|+|+|||..+...... .+...+++..
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~P 137 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 137 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECC
Confidence 6999999999999987543332 3556666654
No 441
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.39 E-value=0.14 Score=51.04 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||||.+.+++..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999865
No 442
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.38 E-value=0.2 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.33 E-value=0.18 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-++|.|++|+|||+|.+++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 444
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.30 E-value=0.2 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.27 E-value=0.72 Score=42.96 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|+..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5999999999999999999763
No 446
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.25 E-value=0.13 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48899999999999999999843
No 447
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.19 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 448
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.24 E-value=0.38 Score=46.23 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEeechhHH
Q 007989 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFV 301 (582)
Q Consensus 260 g~~~pkgvLL~GPpGTGKT~LArAlA~e~~~-pfi~is~s~~~ 301 (582)
+..+++-|+|+|.||+||+++|+.+....+. .+..++.++-+
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 3446678999999999999999999887753 24445665544
No 449
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.19 E-value=0.21 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|...+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 450
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.18 E-value=0.6 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.|+||+|||+|..++++.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 451
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.18 E-value=0.22 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 452
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.16 E-value=0.24 Score=44.51 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
+..|++.|++|+|||+|..++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999763
No 453
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.12 E-value=0.28 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 454
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.11 E-value=0.16 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
...+++.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999764
No 455
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.07 E-value=0.22 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999753
No 456
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.04 E-value=1.5 Score=46.97 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEeec
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is~ 297 (582)
.+|++||+|+|||..+-.++... +.+++.+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 68999999999999987666542 335555554
No 457
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.03 E-value=0.23 Score=43.99 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.+++.|++|+|||+|.+++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 458
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.00 E-value=0.22 Score=45.18 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 459
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.99 E-value=0.25 Score=47.67 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi~ 294 (582)
.-+.|.||.|+||||+++.+++. +..+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 35889999999999999999987 444443
No 460
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.91 E-value=0.62 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.-+.|+||+|+|||+|++.+++..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998855
No 461
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.91 E-value=0.22 Score=44.35 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
-+++.|++|+|||+|..++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 462
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.86 E-value=0.53 Score=53.06 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.8
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAI 284 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAl 284 (582)
-+.|.||+|+|||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4889999999999999754
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.86 E-value=0.24 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.+++.|++|+|||+|..++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 464
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=88.85 E-value=1.6 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~ 286 (582)
+++++.+|+|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 3799999999999998776654
No 465
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.85 E-value=0.67 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007989 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 261 ~~~pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
...| -|.+.|++|+|||+|..++.+.
T Consensus 32 ~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 3455 5999999999999999999884
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.74 E-value=0.27 Score=47.93 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCCEEE
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFS 294 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~----~~pfi~ 294 (582)
++-|.|.|++|+|||++++.++..+ +.+++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4468888999999999999998865 335554
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.73 E-value=0.26 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 468
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.66 E-value=0.13 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||+|+|||||.+.+|+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999843
No 469
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.59 E-value=0.27 Score=50.46 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
+|++|.|++|+|||++|.++... |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 48999999999999999999875 44443
No 470
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.57 E-value=0.23 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 471
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.53 E-value=0.26 Score=44.21 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|..++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999997643
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.52 E-value=0.42 Score=49.88 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~---~~pfi~is~ 297 (582)
.++++.||+|+|||++++.++... +..++.++.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 379999999999999999997653 566666653
No 473
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=88.49 E-value=3 Score=48.85 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEeec
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~--------~~pfi~is~ 297 (582)
+.+++.+|+|+|||..+-..+.+. +.+++.+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999999887776654 566666654
No 474
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.41 E-value=2.8 Score=50.35 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHhcCchhhhhhcCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEeec
Q 007989 236 VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISG 297 (582)
Q Consensus 236 ~d~~k~~L~e~v~~l~~p~~~~~~g~~~pkgvLL~GPpGTGKT~LArAlA~---e~~~pfi~is~ 297 (582)
.+.+++.+..++..+... .|..+|++||+|+|||..|-..|- ..+..++.+..
T Consensus 605 t~~Q~~ai~~il~~~~~g---------~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQP---------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSS---------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhcC---------CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 344555555565544332 245799999999999987653332 23555555543
No 475
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.40 E-value=0.77 Score=49.14 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
-|+|.|.||+|||+|..++.+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 599999999999999999965
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.39 E-value=0.26 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 477
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.34 E-value=0.26 Score=50.54 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e~~~pfi 293 (582)
+|+||.|++|+|||++|.++.. .|..++
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 4899999999999999999865 354444
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.33 E-value=0.26 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
.|++.|++|+|||+|+.+++...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 479
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.33 E-value=1.2 Score=47.34 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCcHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLA 281 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LA 281 (582)
++.+++.+|+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 468999999999999874
No 480
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.31 E-value=0.47 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--CCCEEEeec
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISG 297 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e~--~~pfi~is~ 297 (582)
+.-+++.|.+|+|||+++..+|..+ +..+..+++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3468899999999999999998654 556666653
No 481
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.30 E-value=0.19 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||+|+|||+|.+.+++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999973
No 482
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.30 E-value=0.29 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~e 287 (582)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999764
No 483
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.27 E-value=0.31 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
-.|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 484
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.26 E-value=0.27 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.22 E-value=0.25 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.16 E-value=0.26 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.15 E-value=0.28 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 488
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.14 E-value=0.28 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 489
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.11 E-value=0.25 Score=44.36 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 007989 266 GVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~ 286 (582)
.|++.|++|+|||+|..++.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999965
No 490
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.11 E-value=0.25 Score=44.99 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.03 E-value=0.18 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~ 288 (582)
-+.|.||.|+|||+|.+.+++..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999998854
No 492
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=87.99 E-value=1.8 Score=46.76 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 007989 265 KGVLLVGPPGTGKTLLAKA 283 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArA 283 (582)
+.+++.+|+|+|||..+-.
T Consensus 159 ~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCEEEECCSSTTSHHHHHH
T ss_pred CCEEEECCCCccHHHHHHH
Confidence 5799999999999987543
No 493
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.93 E-value=0.27 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.92 E-value=0.31 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
-+.|.||+|+|||+|.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999983
No 495
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.76 E-value=0.36 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 007989 264 PKGVLLVGPPGTGKTLLAKAIAG 286 (582)
Q Consensus 264 pkgvLL~GPpGTGKT~LArAlA~ 286 (582)
...|++.|++|+|||+|...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999964
No 496
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.67 E-value=0.14 Score=47.91 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
.-+.|.|++|+|||+|.+++++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999754
No 497
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.67 E-value=0.31 Score=43.86 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 007989 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 265 kgvLL~GPpGTGKT~LArAlA~e 287 (582)
..|++.|++|+|||+|..++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.62 E-value=0.24 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999764
No 499
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.61 E-value=0.31 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGE 287 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e 287 (582)
.|++.|++|+|||+|..++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.61 E-value=0.26 Score=56.93 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEee
Q 007989 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSIS 296 (582)
Q Consensus 266 gvLL~GPpGTGKT~LArAlA~e~----~~pfi~is 296 (582)
-.++.||||||||+++..++..+ +.+++.+.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 47999999999999877775532 34555444
Done!