Your job contains 1 sequence.
>007992
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSF
TPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLI
YNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRG
VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRG
RNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASI
QRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDA
ADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKR
IIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVE
ADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYAT
VGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007992
(582 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 1153 4.9e-117 1
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 318 4.4e-29 2
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 296 1.1e-25 1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 269 7.2e-22 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 205 3.6e-15 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 200 2.1e-11 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 197 2.4e-11 2
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 146 1.2e-06 1
DICTYBASE|DDB_G0293562 - symbol:DDB_G0293562 species:4468... 131 3.4e-05 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 125 0.00015 1
DICTYBASE|DDB_G0272686 - symbol:DDB_G0272686 "unknown" sp... 120 0.00044 1
UNIPROTKB|G4MW77 - symbol:MGG_11130 "Uncharacterized prot... 116 0.00079 2
DICTYBASE|DDB_G0291444 - symbol:DDB_G0291444 species:4468... 117 0.00090 1
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 259/499 (51%), Positives = 306/499 (61%)
Query: 63 LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAXXXXXXLMTDEERLIYN 122
+N F WSR MSTS RGRSMRSKVE RM+KESGKT+REIRRA LMTDEERLIYN
Sbjct: 1 MNQVFKGWSRGMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59
Query: 123 XXXXXXXXXXXXXXXXXYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXX 182
Y+LPELP VHDPELFT EQ+QA+KKIGF+NKNY
Sbjct: 60 LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119
Query: 183 XXXXQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
QNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct: 120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179
Query: 243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASI R
Sbjct: 180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIHR 239
Query: 303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEP-PVDSDQEELDKFXXXXXXXX 361
VASTFFNAID+KEG+PYVF G+++ EESEP DSDQEELD+F
Sbjct: 240 VASTFFNAIDKKEGTPYVFHGDKQSERGTSVDNREESEPGDEDSDQEELDRFIAEIEEAA 299
Query: 362 XXXXXXXXXXXXXXLTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRI 421
RIRYW+REE GR R E D RR +D +++R
Sbjct: 300 DKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASHGFRRND--RDTHSQRR- 356
Query: 422 IXXXXXXXXXXVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
N SD D + D DE + R +R + R E KR
Sbjct: 357 ------------PNDSDDDDDDGELDSEDDEIPK-RFDRARSSNTNTRRPREDFKRRSPD 403
Query: 482 DFSRKMTNEDSESENMFSDVENAMWKSESEDE-----HDSRASRAEANHNYMSSSDDEDE 536
R S+ +++ SD++N MW SE E++ + S + E + +S+S +
Sbjct: 404 PRPRPRAQVRSD-DDVLSDLDNTMWDSEDEEDAPPANYISSSDDDEDENRTVSASSSKQS 462
Query: 537 FYATVGNKKNGMNEFESEA 555
+ + ++G+N +S++
Sbjct: 463 RFRN-NSSRDGINNSKSKS 480
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 46/158 (29%), Positives = 76/158 (48%)
Query: 434 RNGSDLQSDAY--DSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTN-- 489
RN D S DSD+ D+ + ++F RAR R DF R+ +
Sbjct: 346 RNDRDTHSQRRPNDSDDDDDDGELDSEDDEIPKRFDRARSSNTNTRRPREDFKRRSPDPR 405
Query: 490 -----EDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNK 544
+ +++ SD++N MW +SEDE D+ + NY+SSSDD+++ TV
Sbjct: 406 PRPRAQVRSDDDVLSDLDNTMW--DSEDEEDAPPA------NYISSSDDDEDENRTVSAS 457
Query: 545 KNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
+ + F + + + + +NN +K+ K+ DE WDSD
Sbjct: 458 SSKQSRFRNNS----SRDGINNSKSKSGKQRDEDWDSD 491
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 318 (117.0 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 88/296 (29%), Positives = 142/296 (47%)
Query: 5 RNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRP--TTHFCDDNRFSFTP 62
R ++ F S L S+ S+ + ++ V L ++ RP F + F TP
Sbjct: 21 RKSRQLGFLASSSPLFSSFNSMNRTISSCNIVCKVLHKESLTRPMWNVSFLRSSSFHSTP 80
Query: 63 LNYPFNR-WSRAMSTSKRGRSMRSKVERRMQKESGKTMREI---RRAXXXXXXLMTDEER 118
+ S++ ++S + +K++R+ K +R + R MT EE+
Sbjct: 81 ARETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEK 140
Query: 119 LIYNXXXXXXXXXXXXXXXXXYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXX 178
++ E E + HDPE+ TPE+ Y K+G + KNY
Sbjct: 141 ILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGR 200
Query: 179 XXXXXXXXQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
NMHLHWK H+T+QV F +++KE+A +ARL+GGIV+++H TIIM+
Sbjct: 201 RGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMY 260
Query: 239 RGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPE 292
RG+NY QP I P TL ++KAL K++ AL + + I ++EQ+L+ + E
Sbjct: 261 RGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
Score = 48 (22.0 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 27/134 (20%), Positives = 50/134 (37%)
Query: 454 NRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTN---EDSE--SENMFSDVENAMWKS 508
++ R R K+ E E + +A+ R TN +D++ SE + +E +
Sbjct: 288 SKCRDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECL 347
Query: 509 ESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRL 568
E E E D + + + + E + + EFE + ++ L
Sbjct: 348 EDEQEEDEAGLELATDSDLSDIFETDSELEDAKTERPLFLEEFEKFPAINNREDEDFGDL 407
Query: 569 NKTQKEADEAWDSD 582
K + E +E D D
Sbjct: 408 GKAKSEGEEN-DDD 420
Score = 45 (20.9 bits), Expect = 9.1e-29, Sum P(2) = 9.1e-29
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 508 SESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVN 565
SE ED R E + + ++ EDE + +G K+ E E++ D S ++V+
Sbjct: 374 SELEDAKTERPLFLEEFEKFPAINNREDEDFGDLGKAKSE-GE-ENDDDKSPNFDEVD 429
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 296 (109.3 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 80/251 (31%), Positives = 125/251 (49%)
Query: 37 SPKLVSSNMIRPTTHFCDDN--RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKE 94
S + +S++ I T DDN RF+F ++ N + T K + R+K+ R+ +
Sbjct: 71 SRRYLSNSTIELRT---DDNVVRFAFNNVSSSGNN---VVPTRKEKKWKRAKLSRKAKVN 124
Query: 95 SGKTMREIRRAXXXXXXLMTDEERLIYNXXXXXXXXXXXXXXXXXYELPELPPSVHDPEL 154
+R R E R+ Y Y++P+ P +DPE
Sbjct: 125 E---LRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPES 181
Query: 155 FTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKE-KIKE 213
T E+ K+ G + KN+ N+HLHWK HETV+V C K ++ E
Sbjct: 182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241
Query: 214 MATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQ 273
A +ARLS GIVI++ TI+++RG+NY +P+ + P +TL+K KAL K R+EQ+LE
Sbjct: 242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHT 301
Query: 274 KLNIKKIEQQL 284
I+K+E++L
Sbjct: 302 SEFIEKLEKEL 312
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 269 (99.8 bits), Expect = 7.2e-22, P = 7.2e-22
Identities = 66/206 (32%), Positives = 108/206 (52%)
Query: 84 RSKVERRMQKE--SGKTMREIRRAXXXXXX--LMTDEERLIYNXXXXXXXXXXXXXXXXX 139
R K++R+ ++E + ++ RR + EER+ Y
Sbjct: 89 RLKLKRKKEREERNAANRKDPRRLTVKGKKKKFVNAEERIKYKLEKAKIKEALLIERLKR 148
Query: 140 YELPELP-PSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHET 198
YE+ ++ P V E+ T E+ KK+G + NY NMHLHWK HET
Sbjct: 149 YEVAKVQGPEVRPHEI-TGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHET 207
Query: 199 VQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKR 258
V+V C+N ++++ A +A+LSGG+ +NI TII +RG+ Y QP+ + P +TL+K+
Sbjct: 208 VKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKK 267
Query: 259 KALFKARFEQALESQKLNIKKIEQQL 284
+A K+++EQ+LES + I E++L
Sbjct: 268 RAYEKSKYEQSLESVRHFIAIAEKEL 293
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 205 (77.2 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 47/150 (31%), Positives = 81/150 (54%)
Query: 141 ELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQ 200
E P+L S D E T ++ +KIG + K + +NMHLHWK+ E V+
Sbjct: 567 ESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVK 624
Query: 201 VCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTK 257
+ C+ + E ++A ++ SGGI++ + V II++RG+NY +P+ L P L+K
Sbjct: 625 IICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSK 684
Query: 258 RKALFKARFEQALESQKLNIKKIEQQLRRM 287
R+AL ++ Q +S KL++ K+ + +
Sbjct: 685 REALKRSVEAQRRKSLKLHVLKLSNNIEEL 714
Score = 70 (29.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 478 NVEADFSRKMTNEDSESENMFSDVE--NAMWKSESEDEH-DSRASRAEANHNYMS----- 529
N+E + +R++ EDS + +SD E N M + E+E++H + +R + Y S
Sbjct: 710 NIE-ELNRQLV-EDSATNETWSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDLSVP 767
Query: 530 SSDDE---DEFYATVGNKKNGMNEF-ESEADSSEAHNKVNNRLNKT 571
SS +E D+ V E+ E E++S+ + N L+ T
Sbjct: 768 SSGEENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEGNSLDST 813
Score = 50 (22.7 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 27/114 (23%), Positives = 42/114 (36%)
Query: 462 KQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVE---NAMWKSESEDEHDSRA 518
++E + E E + +E +S ++ S EN D E + + S E + D
Sbjct: 739 EEETENQHTEPEKAREKIELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEYQEDESE 798
Query: 519 SRAEANH--NYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNK 570
S + H N + S+ + F T G S D S HN N K
Sbjct: 799 SASSQRHEGNSLDSTANLSVFAET------GSANASSFHDRSLPHNSFLNANRK 846
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 200 (75.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 44/141 (31%), Positives = 77/141 (54%)
Query: 150 HDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKE 209
+D E+ + E+ ++K+G + K Y +NMHLHWK E V++ +
Sbjct: 648 YDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQA 707
Query: 210 KIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARF 266
++E A ++ SGG+++ I V +I +RG+NYR+P +L P N LTK KAL ++
Sbjct: 708 FVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIA 767
Query: 267 EQALESQKLNIKKIEQQLRRM 287
Q E+ +I ++E+ + +M
Sbjct: 768 MQRHEALSQHISELERTIEQM 788
Score = 37 (18.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 471 EYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESED 512
E+E + + + + K ED+ES+ +D E+A+ E D
Sbjct: 803 EWENDEDDDDDEEEEKDDVEDNESDWDETDGESAISSIEEAD 844
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 197 (74.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 44/140 (31%), Positives = 77/140 (55%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKEK 210
DPE T E+ ++K+G + K + +NMHLHWK+ E V++ +
Sbjct: 634 DPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDG 693
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 267
+K++A + SGGI+++I V II++RG++Y++P L P N LTKRKAL ++
Sbjct: 694 VKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIEL 753
Query: 268 QALESQKLNIKKIEQQLRRM 287
Q E +I ++ + +++
Sbjct: 754 QRREGLLKHISTMQAKAKQL 773
Score = 40 (19.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 548 MNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
M + + D E +NK++ + +E DE D D
Sbjct: 780 MEKVTDKGDE-ELYNKLDMAYASSDEETDEEDDDD 813
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/128 (28%), Positives = 64/128 (50%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ + ++IG + + + +H HWK E +V +
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
+ A + S G++I+I +K I+++RG+NY++P + L+ N LTKRKAL ++
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687
Query: 267 EQALESQK 274
Q L S K
Sbjct: 688 MQRLGSLK 695
>DICTYBASE|DDB_G0293562 [details] [associations]
symbol:DDB_G0293562 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0293562 EMBL:AAFI02000218 eggNOG:NOG253936
InterPro:IPR014898 Pfam:PF08790 RefSeq:XP_629009.1
ProteinModelPortal:Q54BM0 EnsemblProtists:DDB0192009 GeneID:8629293
KEGG:ddi:DDB_G0293562 InParanoid:Q54BM0 OMA:ECASTVI
ProtClustDB:CLSZ2846558 Uniprot:Q54BM0
Length = 527
Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 43/202 (21%), Positives = 96/202 (47%)
Query: 383 DREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIXXXXXXXXXXVRNGSDLQSD 442
+++E + ++ E+ +SD + +D + KK+ I SD SD
Sbjct: 99 NKKEEAKKKKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETKKPIKKVESSD-SSD 157
Query: 443 AYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVE 502
+ SD + ++ + + ++ + K ++ E +K + + S + DS+S + S+ E
Sbjct: 158 SDSSDSSSEDEKKKKDNKKVETKKVETKKVETKKVETKKEESSDSDSSDSDSSSSESESE 217
Query: 503 NAMWKSESED-EHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAH 561
+ K +++ E S +E++ S S+DE++ VG KK ++ +S + SE+
Sbjct: 218 DEKKKKDTKKVEIKKEESESESSE---SESEDENKDNKKVGTKKEESSDSDSSSSESESE 274
Query: 562 NKVNNRLNK-TQKEADEAWDSD 582
++ + NK + + +E+ DS+
Sbjct: 275 DEKKKKNNKKVEAKKEESSDSE 296
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 42/186 (22%), Positives = 84/186 (45%)
Query: 394 SENFRNSDMDDISRRTVGWKDNRAKKRIIXXXXXXXXXXVRNGSDLQSDAYDSDEAHDEF 453
SE+ S+ D S + + KK + + S+ +SD+ DSDE +
Sbjct: 71 SESESESESDSSSSESESEDEKPVKKEV-----KKEAKKAESSSESESDSSDSDEEMKDA 125
Query: 454 NRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDE 513
+ S + + + + + E +K + +SES + SD ++ SE E+
Sbjct: 126 SSSESDSESESE---EEKKPAKSAKAEPKVVKKAESSESESSDS-SDSDSDDESSEEEEV 181
Query: 514 HDSRASRAEANHNYMSSSDDEDEFYATV-GNKKNGMNEFESEADSSEAHNKVNNRLNKTQ 572
++A AE++ + S S+ E+E A G+ K E +S++DSSE+ + + +
Sbjct: 182 PKAKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSESSSDSDEESGSSG 241
Query: 573 KEADEA 578
E++++
Sbjct: 242 SESEDS 247
>DICTYBASE|DDB_G0272686 [details] [associations]
symbol:DDB_G0272686 "unknown" species:44689
"Dictyostelium discoideum" [GO:0044351 "macropinocytosis"
evidence=RCA] dictyBase:DDB_G0272686 EMBL:AAFI02000008
RefSeq:XP_644902.1 EnsemblProtists:DDB0168922 GeneID:8618581
KEGG:ddi:DDB_G0272686 eggNOG:euNOG35928 InParanoid:Q86A18
OMA:MILESME Uniprot:Q86A18
Length = 455
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 43/167 (25%), Positives = 78/167 (46%)
Query: 417 AKKRIIXXXXXXXXXXVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRK 476
AKK+I + S ++ + + + N S+ RK E E + +K
Sbjct: 2 AKKKIESSDESSSSSD-ESSSSIEVKKNKNKKPETKINSSK---RKHESSSSESEVDSKK 57
Query: 477 RNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRA-SRAEANHNYMSSSDDED 535
+ K++ + SESE+ S E+ +SESE S + S +E+ ++ S S+ E
Sbjct: 58 SKSTSHKLSKLSKKQSESESESSSSES---ESESEKSSSSESESESESENSSSSESESES 114
Query: 536 EFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
E KK ++ ESE DS ++ ++ ++ +K +KE+D + SD
Sbjct: 115 ESEKNQDKKKINKSDSESETDS-DSESEADS--DKKKKESDSSDSSD 158
>UNIPROTKB|G4MW77 [details] [associations]
symbol:MGG_11130 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR011039 GO:GO:0003824 GO:GO:0006367 EMBL:CM001232
KO:K03138 SUPFAM:SSF50916 RefSeq:XP_003714844.1
EnsemblFungi:MGG_11130T0 GeneID:5051107 KEGG:mgr:MGG_11130
Uniprot:G4MW77
Length = 712
Score = 116 (45.9 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 38/140 (27%), Positives = 61/140 (43%)
Query: 438 DLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENM 497
D+ D + D+ + F + R E K+ K + R + G N+ D + K ++ E +
Sbjct: 379 DMSGDEFQDDDENHTFEKERDEETKEAKERQRRNHLGA--NLFGDANEKQVEKEEAEEEL 436
Query: 498 FSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADS 557
+ K E + + A R E + Y S SDD+D Y + + ++ +E E EA
Sbjct: 437 MEQLR----KEEGKRVRKALARR-EKHLMYQSDSDDKDNPYDSSSSSESEPDE-EKEAKE 490
Query: 558 SEAHNKVNNRLNKTQKEADE 577
EA K K KEA E
Sbjct: 491 KEAKEK--EAKEKEAKEAKE 508
Score = 50 (22.7 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDP 294
P N++ + + ++AL +ARF +L+ K Q G +P DP
Sbjct: 96 PPNVVEYPLMVSKRALMEARFHV----MRLSRAKAVQGDPVNGIDPTDP 140
>DICTYBASE|DDB_G0291444 [details] [associations]
symbol:DDB_G0291444 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0291444 Pfam:PF05022 EMBL:AAFI02000177
InterPro:IPR007718 RefSeq:XP_635213.1 STRING:Q54EM7
EnsemblProtists:DDB0183896 GeneID:8628159 KEGG:ddi:DDB_G0291444
eggNOG:NOG140707 InParanoid:Q54EM7 OMA:TICEESS Uniprot:Q54EM7
Length = 447
Score = 117 (46.2 bits), Expect = 0.00090, P = 0.00090
Identities = 33/125 (26%), Positives = 66/125 (52%)
Query: 454 NRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDE 513
N+S+ + +K+ + E +K VE D S + DSES++ SD E+ K D+
Sbjct: 54 NKSK-DNKKRPLDEKEEEKSSKKHKVEKDSSDSSDSSDSESDS--SDSEDEKEKEMKVDK 110
Query: 514 H-DSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQ 572
+ +S +E++ SSS+ EDE + + +E ES++ SSE+ ++ + + ++
Sbjct: 111 KTEDSSSSSESDTESSSSSESEDEKKKEKESDDSSSSESESDSSSSESESESSESSSSSE 170
Query: 573 KEADE 577
E+++
Sbjct: 171 SESED 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 582 514 0.00088 119 3 11 23 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 618 (66 KB)
Total size of DFA: 308 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.34u 0.16s 52.50t Elapsed: 00:00:03
Total cpu time: 52.35u 0.16s 52.51t Elapsed: 00:00:03
Start: Sat May 11 11:57:18 2013 End: Sat May 11 11:57:21 2013