BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007992
(582 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/582 (64%), Positives = 437/582 (75%), Gaps = 33/582 (5%)
Query: 1 MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTH----FCDDN 56
MF RN+ + CFK LS LLQ S ++ KNV L ++P+ ++ + H +C
Sbjct: 1 MFAARNLPRHCFKPLSSLLQLQS-NLDKNV-LPSGLTPECGNTVKVEEAYHRVGLYC--- 55
Query: 57 RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDE 116
LN SRAMSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMT+E
Sbjct: 56 --YVKQLNLLNGSLSRAMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTEE 112
Query: 117 ERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
ERLIYNLKRAKKKVALLLQKLKKYELPELPP HDPEL TPEQLQAYKKIGFRNKNYVPV
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKNYVPV 172
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTII 236
GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA+M+ARLSGGIVIN+HNVKTII
Sbjct: 173 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTII 232
Query: 237 MFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVA 296
MFRGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDP A
Sbjct: 233 MFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPAA 292
Query: 297 MASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAE 356
MASIQRVASTFFNAIDQKEGSPYVFR E + S++EP + EESEP DSDQEELD+FIAE
Sbjct: 293 MASIQRVASTFFNAIDQKEGSPYVFR-EGKQSIIEPAEGFEESEPTADSDQEELDRFIAE 351
Query: 357 IEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNR 416
IEDAADKE+ EE EKEE RIRYW++EE GGR+RRS++ RN D D +R + W
Sbjct: 352 IEDAADKEYEAEEAKEKEEFGRIRYWNKEEFGGRYRRSDSSRNDDHDVEARGSRVWNTTH 411
Query: 417 AKKRIIDSDDEHDS-----------------SDVRNGSDLQSDAYDSDEAHDEFNRSRVE 459
K+ IDSDDE ++ +++ + SDL S++ +SD +F SR +
Sbjct: 412 PKRHAIDSDDEENAHSDNDDDDDDEEEEWHFNNIADASDLDSNSDESDGTRGKFKESRRK 471
Query: 460 RRKQEK--FGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSR 517
R KQ GRAR+ E R+ A+F R M +DSESE M SDVENAMW+SE E++ ++
Sbjct: 472 REKQNNPGIGRARDDESSNRHAGANFRRNMAIKDSESEGMLSDVENAMWESEDEEQENND 531
Query: 518 ASRA-EANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSS 558
+ + + NY SSS D++ + T+ NKK+G+ + ES+ S
Sbjct: 532 SGHLRKFSGNYRSSSSDDEYAHQTMSNKKSGVRDHESKVGGS 573
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 366/550 (66%), Positives = 432/550 (78%), Gaps = 23/550 (4%)
Query: 27 IKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSK 86
+NV + V K +SSN I+ + +D S +P N F+ WSRAMST+ GRSMRSK
Sbjct: 9 FRNVVSRRYVPLKCLSSNPIQSSAG-SEDCSSSISPWN-GFSGWSRAMSTAG-GRSMRSK 65
Query: 87 VERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELP 146
VERRM+KESGKT+RE+RRA+K++KKLMTDEERLIYNL+RAKKKVALLLQKLKKYELPELP
Sbjct: 66 VERRMRKESGKTLREVRRAQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELP 125
Query: 147 PSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF 206
HDPEL T EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF
Sbjct: 126 APRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF 185
Query: 207 PKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARF 266
PKEKIKEMATM+ARLSGGIVIN+H+VKTIIMFRGRNYRQPKNLIP NTLTKRKALFKARF
Sbjct: 186 PKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARF 245
Query: 267 EQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGERE 326
EQAL+SQKLNIKKIEQQLRRMG NPEDPVAMASIQRVASTFFNAID++EGSPYVF+G++
Sbjct: 246 EQALDSQKLNIKKIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKL 305
Query: 327 VSVVEPGKRIEES-EPPVDSDQEELDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDRE 385
P + ++ S EPPVDSDQEELD+FIAEIEDAADKEWA EE AEKEEL+++RYW+RE
Sbjct: 306 FGAA-PTEDLKLSEEPPVDSDQEELDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNRE 364
Query: 386 EIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH----------DSSDVRN 435
E GRFRR +N +N D D R GW R ++R D+DDE DS+DVR+
Sbjct: 365 EFAGRFRRFDNPKNEDFDSDVRGARGWNHTRGRQRTTDTDDEGNDVSEGDEEWDSNDVRD 424
Query: 436 GSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGR--KRNVEADFSRKMTNEDSE 493
+SD DSDE H+EF R++ K + FGRA+ + KRN E +F RK+ EDS
Sbjct: 425 LRTPESDGDDSDEVHNEFTAPRMQSGKLD-FGRAKNNNSKDFKRNAE-EFRRKVDEEDSG 482
Query: 494 SENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNG---MNE 550
SE+M D+ENAMW+S++E+EHDSR SR +N +Y SSSDD++ + + KN +N+
Sbjct: 483 SEDMLDDLENAMWESDAEEEHDSRTSRMASN-DYRSSSDDDEHLHRIKRDSKNARNLVND 541
Query: 551 FESEADSSEA 560
E++AD SE+
Sbjct: 542 HENDADYSES 551
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 30/167 (17%)
Query: 425 DDEH------DSSDVRN-GSDLQSDA--YDSDEAHDEFNRSRVERRKQEKFGRAREYEGR 475
DDEH DS + RN +D ++DA +SDE DEF SR+ ++K + R +G
Sbjct: 521 DDEHLHRIKRDSKNARNLVNDHENDADYSESDEGQDEFRESRIAKQKHGQISRVNNDQGF 580
Query: 476 KRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDED 535
RN EA+FSR M EDSESENM SD + MW ES+DE S+ S+A +N S D+E+
Sbjct: 581 MRNAEANFSRNMIEEDSESENMLSDSKVGMW--ESDDEGYSKVSKAISND--YQSGDEEE 636
Query: 536 EFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
+++ T NE E D + KT K+ DE WDSD
Sbjct: 637 DYHIT-------KNETSKEKD----------KRMKTPKQVDETWDSD 666
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 394/662 (59%), Positives = 454/662 (68%), Gaps = 89/662 (13%)
Query: 1 MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSF 60
MFG RN+Q+ CFK LS LLQ S ++ KNV L +P+ SN I+ + + F
Sbjct: 1 MFGARNLQRHCFKPLSSLLQLQS-NLYKNVVPLGH-TPEC--SNTIKVEEEYHRVGLYCF 56
Query: 61 TP----LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDE 116
LN P SRAMSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMT+E
Sbjct: 57 VKQLNLLNGPL---SRAMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTEE 112
Query: 117 ERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
ERLIYNLKRAKKKVALLLQKLKKYELPELP HDPEL TPEQLQAYKKIGFRNKNYVPV
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPHPRHDPELLTPEQLQAYKKIGFRNKNYVPV 172
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTII 236
GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA+M+ARLSGGIVIN+HNVKTII
Sbjct: 173 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTII 232
Query: 237 MFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVA 296
MFRGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDP A
Sbjct: 233 MFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPAA 292
Query: 297 MASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAE 356
MASIQRVASTFFNAIDQKEGSPYVFR E + S+ EP + EESEP DSDQEELD+FIAE
Sbjct: 293 MASIQRVASTFFNAIDQKEGSPYVFR-EGKQSITEPAEGFEESEPIADSDQEELDRFIAE 351
Query: 357 IEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNR 416
IEDAADKE+ EE EKEE RIRYW++EE GGR+RRS+ N D D +R + W+
Sbjct: 352 IEDAADKEYEAEEAKEKEEFGRIRYWNKEEFGGRYRRSDASTNDDRDVEARGSRVWQTTH 411
Query: 417 AKKRIIDSDDEHDS---------------SDVRNGSDLQSDAYDSDEAHDEFNRSRVERR 461
K+ +DSDDE ++ ++ + SDL S++ SD F SR +R
Sbjct: 412 PKRHAVDSDDEENTHSDNDDDDEEEEWHFNNSADASDLDSNSEGSDGTRRRFKESRRKRE 471
Query: 462 KQEK--FGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRAS 519
KQ GRAR+ E R+ A F MT EDSESE M SDVENAMW+SE E++ ++ +
Sbjct: 472 KQNNPGIGRARDNESSSRHAGAKFRGNMTVEDSESEGMLSDVENAMWESEDEEQENNDSG 531
Query: 520 --------------RAEANHNYMS---------------SSDDEDEFYA--TVGNKKNGM 548
E H MS S+ D F A +V KK+G+
Sbjct: 532 YLRKLSDSYKSSSSDDEYAHQTMSNKKSGARDHEGKVGGSAQYHDSFDAPKSVRGKKHGV 591
Query: 549 NEFESE--------------ADSSE----------AHNKVNNRLNKTQ----KEADEAWD 580
N+ +SE +D++E ++N + + + K+Q KEADEAWD
Sbjct: 592 NKIDSESIDEFSCSENWLWPSDAAEETGDYPTNQNSNNVIKSDIPKSQRRTLKEADEAWD 651
Query: 581 SD 582
SD
Sbjct: 652 SD 653
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 371/595 (62%), Positives = 441/595 (74%), Gaps = 63/595 (10%)
Query: 1 MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSF 60
M RN+Q++ KTLS LLQS+ KNV + V K +SSN I+ ++ +D S
Sbjct: 1 MSIVRNLQRRSLKTLSSLLQSHP---YKNVVSRRYVPLKCLSSNPIQ-SSAGSEDCSSSI 56
Query: 61 TPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLI 120
+P N F+ WSRAMST+ GRSMRSKVERRM+KESGKT+RE+RRA+K++KKLMTDEERLI
Sbjct: 57 SPWN-GFSGWSRAMSTAG-GRSMRSKVERRMRKESGKTLREVRRAQKLRKKLMTDEERLI 114
Query: 121 YNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRG 180
YNL+RAKKKVALLLQKLKKYELPELP HDPEL T EQLQAYKKIGFRNKNYVPVGVRG
Sbjct: 115 YNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRG 174
Query: 181 VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRG 240
VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVIN+H+VKTIIMFRG
Sbjct: 175 VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRG 234
Query: 241 RNYRQPKNLIPFNTLTKRK----------ALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
RNYRQPKNLIP NTLTKRK ALFKARFEQAL+SQKLNIKKIEQQLRRMG N
Sbjct: 235 RNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQQLRRMGVN 294
Query: 291 PEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEES-EPPVDSDQEE 349
PEDPVAMASIQRVASTFFNAID++EGSPYVF+G++ P + ++ S EPPVDSDQEE
Sbjct: 295 PEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKLFGAA-PTEDLKLSEEPPVDSDQEE 353
Query: 350 LDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRT 409
LD+FIAEIEDAADKEWA EE AEKEEL+++RYW+REE GR R ++ + + +D+S
Sbjct: 354 LDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNREEFAGRQRTTDT--DDEGNDVS--- 408
Query: 410 VGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRA 469
+ D+E DS+DVR+ +SD DSDE H+EF R++ K + FGRA
Sbjct: 409 -------------EGDEEWDSNDVRDLRTPESDGDDSDEVHNEFTAPRMQSGKLD-FGRA 454
Query: 470 REYEGR--KRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNY 527
+ + KRN E +F RK+ EDS SE+M D+ENAMW+S++E+EHDSR SR +N +Y
Sbjct: 455 KNNNSKDFKRNAE-EFRRKVDEEDSGSEDMLDDLENAMWESDAEEEHDSRTSRMASN-DY 512
Query: 528 MSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
SSSDD++ + K +N+ KT K+ DE WDSD
Sbjct: 513 RSSSDDDEHLHRI----------------------KRDNKRMKTPKQVDETWDSD 545
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 356/511 (69%), Positives = 399/511 (78%), Gaps = 13/511 (2%)
Query: 1 MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDV-SPKLVSSNMIRPTTHFCDDNRFS 59
MF R CFKTLS LL SN +N L+KDV S KL N+++ C+ S
Sbjct: 1 MFAARRFHSHCFKTLSSLLLSNPN---RNAMLVKDVTSTKLACINLMQQNVS-CEYGFPS 56
Query: 60 FTPLNYPFNRWS-RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEER 118
F PL++PFN S R MSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMTDEER
Sbjct: 57 FLPLDHPFNNGSCRGMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTDEER 115
Query: 119 LIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGV 178
LIYNLKRAKKKVALLLQKLKKYELPELPP +HDPELFT EQLQAYKKIGFRN+NYVPVGV
Sbjct: 116 LIYNLKRAKKKVALLLQKLKKYELPELPPPLHDPELFTSEQLQAYKKIGFRNRNYVPVGV 175
Query: 179 RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVINIHNVKTIIMF
Sbjct: 176 RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMF 235
Query: 239 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMA 298
RGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDPVAMA
Sbjct: 236 RGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPVAMA 295
Query: 299 SIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIE 358
SIQRVASTFFNAID+KEGSPYVF+G+++ V +P +E EP DSDQEELD+FIAEIE
Sbjct: 296 SIQRVASTFFNAIDKKEGSPYVFQGDKQ-PVAQPIDDMEHPEPAADSDQEELDRFIAEIE 354
Query: 359 DAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKD---- 414
DAADKEWA EE AE+EE +IRYW++E+ GGR RRSE R++ + R WKD
Sbjct: 355 DAADKEWAAEEAAEQEEFGKIRYWNKEDFGGRVRRSEMHRSAASEGEERGAGRWKDAHDR 414
Query: 415 -NRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYE 473
+ + D + DS DV +DL+S+ DSDE NRSR KQ GR +
Sbjct: 415 RRNDDRDDDNDDGQWDSDDVEISNDLESETDDSDEVLGVENRSRGVHTKQNGVGRDYNTK 474
Query: 474 GRKRNVEADFSRKMTNEDSESENMFSDVENA 504
G +RN EA F R++ EDS+SE M SD+++A
Sbjct: 475 GFRRNAEAKFQREVVKEDSKSEYMLSDLDSA 505
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 412 WKD--NRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRA 469
WKD NR + D D + DS DV +DL+S+ DSDE NRSR RKQ GR
Sbjct: 517 WKDAHNRRRNDDQDDDGQWDSDDVEIYNDLESETDDSDEVLGVQNRSRGVHRKQNGVGRD 576
Query: 470 REYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKS 508
+G + N EA F R++ EDS+SE+M SD+++AMW+S
Sbjct: 577 YNTKGFRTNAEAKFQREVVKEDSKSEHMLSDLDSAMWES 615
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 352/517 (68%), Positives = 399/517 (77%), Gaps = 29/517 (5%)
Query: 74 MSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALL 133
MSTSK GRSMRSKVERRM+KESGKT+REIRRAKK+KKKLMTDEERLIYNLKRAKKKVALL
Sbjct: 1 MSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALL 59
Query: 134 LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
LQKLKKY+LPELP +HDPEL TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMH+HW
Sbjct: 60 LQKLKKYDLPELPSPLHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHW 119
Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFN 253
KFHETVQV CDNFPKEKIKEMATMIARLSGGIV+N+HNVKTIIMFRGRNYRQPK+LIP N
Sbjct: 120 KFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPKDLIPLN 179
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQ 313
TLTKRKALFKARFEQALESQKLNIK+IEQQLRRMG NPEDPVAMASIQRVASTFFNAID+
Sbjct: 180 TLTKRKALFKARFEQALESQKLNIKQIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDK 239
Query: 314 KEGSPYVFRGEREVSVVEPGKRIEESEPPVD-SDQEELDKFIAEIEDAADKEWAEEEEAE 372
KEGSPYVF G++ S+VEP +E EPP D SDQEELD+FIAEIEDAAD+EWA EE AE
Sbjct: 240 KEGSPYVFHGDK-GSMVEPHDHLEHLEPPADESDQEELDRFIAEIEDAADQEWAAEEAAE 298
Query: 373 KEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSSD 432
KEE RIRYW+RE+ GGR R E R+ D +R W+D R K+ + DD+ D S+
Sbjct: 299 KEEFGRIRYWNREDYGGRIRSPEIHRSEVSDGEARGARHWRDARDKRMSSNRDDDSDVSE 358
Query: 433 ------VRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRK 486
VR+ SD H+ RRKQ+ GR KR E +F K
Sbjct: 359 GDNEWNVRDNSD-----------HERL------RRKQDGIGREYNAHDIKRKFEPEFKEK 401
Query: 487 MTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKN 546
M EDSESE M SD++NAMW+S++E+EH SR SRAEA+ + SSSDDE++ Y N+
Sbjct: 402 MAEEDSESEEMLSDLDNAMWQSDAEEEHVSRTSRAEASPIFKSSSDDEEDTYPLKRNEIT 461
Query: 547 GMNEFESEADSSEAHNKVNNRL-NKTQKEADEAWDSD 582
+ + +S+A E K++ L K E DE WDSD
Sbjct: 462 RVTDPQSDAARDEF--KISRSLKQKNGVEVDETWDSD 496
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 352/600 (58%), Positives = 431/600 (71%), Gaps = 45/600 (7%)
Query: 12 FKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWS 71
F +S LL SN + +V L D + + VS N+ + H + S + + PFN
Sbjct: 11 FSRVSNLLLSNRYN---SVILSTDCNSEAVSCNVGHRSIH-GEYVLPSTSKVVGPFNGLV 66
Query: 72 RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVA 131
R MSTSK GRSMRSKVERRM+KESGKT+REIRRAKKIKKKLMT+EERL+YNLKRAKKKVA
Sbjct: 67 RCMSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKIKKKLMTEEERLLYNLKRAKKKVA 125
Query: 132 LLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHL 191
LLLQ+LKKYELPELPP HDPEL TPEQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNMHL
Sbjct: 126 LLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHL 185
Query: 192 HWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
HWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIV+NIH+VKTIIMFRGRNYRQPKNLIP
Sbjct: 186 HWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIP 245
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAI 311
NTLTKRKALFKARFEQAL+SQKLNIKKIEQ+LRR G NPEDPVAMASIQRVASTFFNAI
Sbjct: 246 INTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGINPEDPVAMASIQRVASTFFNAI 305
Query: 312 DQKEGSPYVFRGERE-VSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEE 370
D+KEG+PYVF +++ V+ + +EE+E DSDQEELD+FIAEIEDAAD++W EE
Sbjct: 306 DKKEGTPYVFYSDKQAVAETKTKTNMEEAESDSDSDQEELDRFIAEIEDAADRDWVAEEA 365
Query: 371 AEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH-- 428
AEKEEL+++RY +REE GGRFR+S+ N+D DD + W+ +K+R+ +S++E
Sbjct: 366 AEKEELSQLRYRNREEHGGRFRKSDMRTNNDSDDEMDKPRVWRQRDSKQRLYNSEEEDGD 425
Query: 429 -------DSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
DS D +N ++ +D DSD AH +R + + + R +E RNV+
Sbjct: 426 HENEEEWDSDDGQNANNSYTD--DSDGAHQIVKATRRAGGRHD-LAKTRSFE---RNVDP 479
Query: 482 DFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATV 541
F+R+M E SE ENM SD+EN MW+S+ E+E D + S+ + +Y D+ED +
Sbjct: 480 -FARRMDKEASEPENMLSDLENTMWQSDEEEEDDMKISK-NVDQDY---KDNEDHLHHMK 534
Query: 542 GNKKNGMNEFESEAD-SSEAHNKVNN---------------RLNKTQKEADEA---WDSD 582
++ N N+++S D E++NK + R N K+ D WDSD
Sbjct: 535 KDRNNRHNDYDSSIDEPDESYNKFKHTYTKQKQDRMSKSKSRYNSVSKDTDSGKAMWDSD 594
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 352/600 (58%), Positives = 430/600 (71%), Gaps = 45/600 (7%)
Query: 12 FKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWS 71
F +S LL SN + V L D + + VS N+ + H + S + + PFN
Sbjct: 11 FSRVSNLLLSNRYN---RVILSTDCNSEAVSCNVGHRSIH-GEYVLPSTSKVVGPFNGLV 66
Query: 72 RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVA 131
R MSTSK GRSMRSKVERRM+KESGKT+REIRRAKKIKKKLMT+EERL+YNLKRAKKKVA
Sbjct: 67 RCMSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKIKKKLMTEEERLLYNLKRAKKKVA 125
Query: 132 LLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHL 191
LLLQ+LKKYELPELPP HDPEL TPEQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNMHL
Sbjct: 126 LLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHL 185
Query: 192 HWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
HWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIV+NIH+VKTIIMFRGRNYRQPKNLIP
Sbjct: 186 HWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIP 245
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAI 311
NTLTKRKALFKARFEQAL+SQKLNIKKIEQ+LRR G NPEDPVAMASIQRVASTFFNAI
Sbjct: 246 INTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGINPEDPVAMASIQRVASTFFNAI 305
Query: 312 DQKEGSPYVFRGERE-VSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEE 370
D+KEG+PYVF +++ V+ + +EE+E DSDQEELD+FIAEIEDAAD++W EE
Sbjct: 306 DKKEGTPYVFYSDKQAVAETKTKTNMEEAESDSDSDQEELDRFIAEIEDAADRDWVAEEA 365
Query: 371 AEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH-- 428
AEKEEL+++RY +REE GGRFR+S+ N+D DD + W+ +K+R+ +S++E
Sbjct: 366 AEKEELSQLRYRNREEHGGRFRKSDMRTNNDSDDEMDKPRVWRQRDSKQRLYNSEEEDGD 425
Query: 429 -------DSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
DS D +N ++ +D DSD AH +R + + + R +E RNV+
Sbjct: 426 HENEEEWDSDDGQNANNSYTD--DSDGAHQIVKATRRAGGRHD-LAKTRSFE---RNVDP 479
Query: 482 DFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATV 541
F+R+M E SE ENM SD+EN MW+S+ E+E D + S+ + +Y D+ED +
Sbjct: 480 -FARRMDKEASEPENMLSDLENTMWQSDEEEEDDMKISK-NVDQDY---KDNEDHLHHMK 534
Query: 542 GNKKNGMNEFESEADS-SEAHNKVNN---------------RLNKTQKEADEA---WDSD 582
++ N N+++S D E++NK + R N K+ D WDSD
Sbjct: 535 KDRNNRHNDYDSSIDEPDESYNKFKHTYTKQKQDRMSKSKSRYNSVSKDTDSGKAMWDSD 594
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 328/526 (62%), Positives = 380/526 (72%), Gaps = 44/526 (8%)
Query: 63 LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYN 122
+N F W RAMSTS RGRSMRSKVE RM+KESGKT+REIRRAKK+KKKLMTDEERLIYN
Sbjct: 1 MNQVFKGWYRAMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
LKRAKKKVALLLQKLKKY+LPELP VHDPELFT EQ+QA+KKIGF+NKNYVPVGVRGVF
Sbjct: 60 LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
GGVVQNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct: 120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179
Query: 243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASIQR
Sbjct: 180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIQR 239
Query: 303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPP-VDSDQEELDKFIAEIEDAA 361
VASTFFNAID+KEG+PYVF G+++ EESEP DSDQEELD+FIAEIE+AA
Sbjct: 240 VASTFFNAIDKKEGTPYVFHGDKQSERGASVDNREESEPGDEDSDQEELDRFIAEIEEAA 299
Query: 362 DKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRI 421
DKEW EEE AE+EE RIRYW+REE GR R E D RR +D R++ R
Sbjct: 300 DKEWEEEEAAEQEEAGRIRYWNREEFAGRSRTPELRSYGDASHGFRRNE--RDPRSQTRP 357
Query: 422 IDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
DSD++ D + D DE + +F RAR R
Sbjct: 358 KDSDEDDDG--------------ELDSEDDEIPK---------RFDRARSSNTNTRRPRE 394
Query: 482 DFSR-----KMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDE 536
DF R ++ + +++ SD++N MW +SEDE D+ + NY+SSSDD+++
Sbjct: 395 DFKRRSPDPRLRPQVRSDDDVLSDLDNTMW--DSEDEEDAPPA------NYISSSDDDED 446
Query: 537 FYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
T+ + F + + + + +NN K+ K+ DE WDSD
Sbjct: 447 ENRTISASSSKQPRFRNNS----SRDGINNSKTKSGKQTDEDWDSD 488
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 283/356 (79%), Positives = 305/356 (85%), Gaps = 11/356 (3%)
Query: 63 LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYN 122
+N F WSR MSTS RGRSMRSKVE RM+KESGKT+REIRRAKK+KKKLMTDEERLIYN
Sbjct: 1 MNQVFKGWSRGMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
LKRAKKKVALLLQKLKKY+LPELP VHDPELFT EQ+QA+KKIGF+NKNYVPVGVRGVF
Sbjct: 60 LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
GGVVQNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct: 120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179
Query: 243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASI R
Sbjct: 180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIHR 239
Query: 303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPP-VDSDQEELDKFIAEIEDAA 361
VASTFFNAID+KEG+PYVF G+++ EESEP DSDQEELD+FIAEIE+AA
Sbjct: 240 VASTFFNAIDKKEGTPYVFHGDKQSERGTSVDNREESEPGDEDSDQEELDRFIAEIEEAA 299
Query: 362 DKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSE---------NFRNSDMDDISRR 408
DKEW EEE AE+EE RIRYW+REE GR R E FR +D D S+R
Sbjct: 300 DKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASHGFRRNDRDTHSQR 355
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/338 (76%), Positives = 294/338 (86%), Gaps = 2/338 (0%)
Query: 67 FNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRA 126
++RW RAMST +GRSMRSKVE+RM +E+G+T RE+RRA K++KKLMT++E+LIYNL+RA
Sbjct: 47 YSRWRRAMST--KGRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKLIYNLRRA 104
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
KKKVALLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVV
Sbjct: 105 KKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVV 164
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
QNMH+HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIVINIHN KTIIMFRGRNYRQP
Sbjct: 165 QNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQP 224
Query: 247 KNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVAST 306
KNLIPFNTLTKRKALFKARFEQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVAST
Sbjct: 225 KNLIPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVAST 284
Query: 307 FFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWA 366
FF AID+++G+PY+FRG+ + S + EP DSDQEELD+FI+EIE AA+K+W
Sbjct: 285 FFRAIDEQQGTPYIFRGDTQPSAGTSEIKEPRDEPSEDSDQEELDRFISEIESAAEKQWE 344
Query: 367 EEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDD 404
EEE AEKEE +R+RYW+RE++G R + N NSD +D
Sbjct: 345 EEEAAEKEESSRMRYWEREDVGDRRGFNRNNENSDYED 382
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/335 (76%), Positives = 292/335 (87%), Gaps = 2/335 (0%)
Query: 70 WSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKK 129
W RAMST +GRSMRSKVE+RM +E+G+T RE+RRA K++KKLMT++E+LIYNL+RAKKK
Sbjct: 51 WRRAMST--KGRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKLIYNLRRAKKK 108
Query: 130 VALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
VALLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNM
Sbjct: 109 VALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNM 168
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
H+HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIVINIHN KTIIMFRGRNYRQPKNL
Sbjct: 169 HMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 228
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFN 309
IPFNTLTKRKALFKARFEQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVASTFF
Sbjct: 229 IPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVASTFFR 288
Query: 310 AIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEE 369
AID+++G+PY+FRG+ + S + EP DSDQEELD+FI+EIE AA+K+W EEE
Sbjct: 289 AIDEQQGTPYIFRGDAQPSAGTSEIKEPRDEPSEDSDQEELDRFISEIESAAEKQWEEEE 348
Query: 370 EAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDD 404
AEKEE +R+RYW+RE++G R + ++ NSD +D
Sbjct: 349 AAEKEESSRMRYWEREDVGDRRGFNRSYENSDYED 383
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 296/527 (56%), Positives = 360/527 (68%), Gaps = 73/527 (13%)
Query: 70 WSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKK 129
W RAMST +GR+MR+KVE+RM +E+G+T RE+RRA K++KKLMT++E+ IYNL+RAKKK
Sbjct: 53 WRRAMST--KGRTMRTKVEKRMARETGRTQRELRRAVKLRKKLMTEDEKFIYNLRRAKKK 110
Query: 130 VALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
VALLLQKLKKYELP+L HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNM
Sbjct: 111 VALLLQKLKKYELPDLQAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNM 170
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
H+HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIVINIHN KTIIMFRGRNYRQPKNL
Sbjct: 171 HMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 230
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFN 309
IPFNTLTKRKALFKARFEQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVASTFF
Sbjct: 231 IPFNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVASTFFR 290
Query: 310 AIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEE 369
AID+++G+PY+FRG+ + S P + EP DSDQEELD+FI+EIE AA+K+W EEE
Sbjct: 291 AIDEQQGTPYIFRGDAQASAGTPEIKEPRDEPSEDSDQEELDRFISEIETAAEKQWEEEE 350
Query: 370 EAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHD 429
AEKEE +R+RYW+RE++ R W DN I S +E
Sbjct: 351 AAEKEESSRMRYWEREDVDARR--------------------WDDN---SEIEASGEECG 387
Query: 430 SSDVRNGSDLQSDAYDSDEAHD-EFNRSRVERRKQEKFGRAREYEGRKRNVEADF--SRK 486
S D R+ ++ D+ + H +F R ER + GR+ ++ F S +
Sbjct: 388 SGDDRDSVLGLNNDIDTGDGHPRQFKSMRNERSRS---------SGRQISIPGGFRGSNR 438
Query: 487 M--TNEDSESENMF-------SDVE-NAMWKSESE-DEHDSRASRAEANHNYMSSSDDED 535
+ + D+ MF SD E + +W S+ + E +SRA + N+ SS +D D
Sbjct: 439 IPGNSADASDGTMFRGSNGDESDTEDDDLWMSDYKGGETNSRAPKVNF-PNFHSSGEDSD 497
Query: 536 EFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
+ N+KNG ++ KT+K DE+WDSD
Sbjct: 498 D------NRKNG------------------GKIGKTKKNTDESWDSD 520
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 300/527 (56%), Positives = 359/527 (68%), Gaps = 39/527 (7%)
Query: 70 WSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKK 129
W R M ++ +GRSMRSKVE+RM +E+G+T RE+RRA K++KKLMTD+ERLIY+L+RAKKK
Sbjct: 59 WRRRMMSTTKGRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTDDERLIYSLRRAKKK 118
Query: 130 VALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
VALLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNM
Sbjct: 119 VALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNM 178
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
H+HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIVINIHN KTIIMFRGRNYRQPKNL
Sbjct: 179 HMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 238
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFN 309
IP NTLTKRKALFKARFEQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVASTFF
Sbjct: 239 IPLNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVASTFFR 298
Query: 310 AIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEE 369
AID+++G+PYVFRG+ + + + + DSDQEELD+FIAEIE AA+++W EEE
Sbjct: 299 AIDEQQGTPYVFRGDTQPTAGTTEIKEPHDQQSEDSDQEELDRFIAEIETAAEQQWEEEE 358
Query: 370 EAEKEELTRIRYWDREEIGGR--FRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDE 427
AEKEE +R+RYWDREE R F RS + ++ D R T A R D D E
Sbjct: 359 AAEKEESSRLRYWDREEGSERRGFNRSYDNPGNEYRDQGRYTRDNNRRTADSRRWDDDSE 418
Query: 428 HDSSDVRNGSDLQSD-AYDSD-EAHDEFNRSRVERRKQEK--FGRAREYEGRKRNVEADF 483
D S SD D +D+D +A DE R R E + EK R+R Y R +
Sbjct: 419 IDVSGEEWDSDDDKDNVFDNDVDAPDEHPR-RFESMRSEKSRSDRSRNYTSRGSRSSIEK 477
Query: 484 SRKMTNEDSES------ENMFSDVENAMWKSESEDEHDSRASRAE-AN-HNYMSSSDDED 535
R S ++ ++ +W + ++E + RA + AN H+ SS +D D
Sbjct: 478 PRNSATASGRSVFRESEDDELDTEDDELWGPDLKEERNLRAPKVNFANYHSGTSSEEDTD 537
Query: 536 EFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
+ + K ++R T+K DE+WDSD
Sbjct: 538 DNW------------------------KQDSRTGNTRKNTDESWDSD 560
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 298/527 (56%), Positives = 361/527 (68%), Gaps = 39/527 (7%)
Query: 70 WSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKK 129
W R M ++ +GRSMRSKVE+RM +E+G+T RE+RRA K++KKLMTD+ERLIY+L+RAKKK
Sbjct: 59 WRRRMMSTTKGRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTDDERLIYSLRRAKKK 118
Query: 130 VALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
VALLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNM
Sbjct: 119 VALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNM 178
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
H+HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIVINIHN KTIIMFRGRNYRQPKNL
Sbjct: 179 HMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPKNL 238
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFN 309
IP NTLTKRKALFKARFEQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVASTFF
Sbjct: 239 IPLNTLTKRKALFKARFEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVASTFFR 298
Query: 310 AIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEE 369
AID+++G+PYVFRG+ + + + + DSDQEELD+FIAEIE AA+++W EEE
Sbjct: 299 AIDEQQGTPYVFRGDTQPTAGTTEIKEPHDQQSEDSDQEELDRFIAEIETAAEQQWEEEE 358
Query: 370 EAEKEELTRIRYWDREEIGGR--FRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDE 427
AEKEE +R+RYWDREE R F RS + ++ D R T A R D D E
Sbjct: 359 AAEKEESSRLRYWDREEGSERRGFNRSYDNPGNEYRDQGRYTRDNNRRTADSRRWDDDSE 418
Query: 428 HD-SSDVRNGSDLQSDAYDSD-EAHDEFNRSRVERRKQEK--FGRAREYEGRKRNVEADF 483
D S + + D + + +D+D +A DE R R E + EK R+R Y R +
Sbjct: 419 IDVSGEEWDSDDDRDNVFDNDVDAPDEHPR-RFESMRSEKSRSDRSRNYTSRGSRSSIEK 477
Query: 484 SRKMTNEDSES------ENMFSDVENAMWKSESEDEHDSRASRAE-AN-HNYMSSSDDED 535
R S ++ ++ +W + ++E + RA + AN H+ SS +D D
Sbjct: 478 PRNSATASGRSVFRESEDDELDTEDDELWGPDLKEERNLRAPKVNFANYHSGTSSEEDTD 537
Query: 536 EFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
+ + K ++R T+K DE+WDSD
Sbjct: 538 DNW------------------------KQDSRTGNTRKNTDESWDSD 560
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/380 (68%), Positives = 306/380 (80%), Gaps = 5/380 (1%)
Query: 72 RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVA 131
R MST+K GRSMRSKVE+RM +E+G+T RE+RRA K++KKLMTD+ERLI++++RAKKKVA
Sbjct: 66 RLMSTTK-GRSMRSKVEKRMARETGRTQRELRRAVKLRKKLMTDDERLIHSMRRAKKKVA 124
Query: 132 LLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHL 191
LLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNMH+
Sbjct: 125 LLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHM 184
Query: 192 HWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
HWKFHETVQVCCDNFPKEKIKEMA M+ RLSGGIV+NIHN KTIIMFRGRNYRQPKNLIP
Sbjct: 185 HWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNTKTIIMFRGRNYRQPKNLIP 244
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAI 311
FNTLTKRKALFKAR+EQALESQKLNIKKIE QLRR G NPEDPVAMASIQRVASTFF AI
Sbjct: 245 FNTLTKRKALFKARYEQALESQKLNIKKIETQLRRKGINPEDPVAMASIQRVASTFFRAI 304
Query: 312 DQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEEA 371
D+++G+PYVFRG+ + + + + DS+QEELD FIAEIE AA+K+W EEE A
Sbjct: 305 DEQQGTPYVFRGDAQPTAGTTEIKEPHDQQSEDSEQEELDHFIAEIESAAEKQWEEEEAA 364
Query: 372 EKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSS 431
EKEE +R++Y REE+G R + ++ NSD DD ++ +N K DS D S
Sbjct: 365 EKEETSRLQYRYREEMGDRRGFNRSYDNSDADDRNQGRYRRDNNNHNKWTSDSRRWDDDS 424
Query: 432 DVRNGSDLQSDAYDSDEAHD 451
++ + + +DSD+ D
Sbjct: 425 EI----EASGEDWDSDDGRD 440
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/375 (38%), Positives = 211/375 (56%), Gaps = 49/375 (13%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
+R+IR AKK++K MT E+ ++ +++ KKK+AL ++LKK+ELP LP DPE+ TPE
Sbjct: 169 LRQIRLAKKLRKASMTPEQTFLWRIEKCKKKIALHEEQLKKFELPPLPEPDPDPEVLTPE 228
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
QL A KK+G++NKNYVPVG RG++GG +QNMH+HWK HETV++ CDNFPKEKIKEM +
Sbjct: 229 QLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETL 288
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP--FNTLTKRKALFKARFEQALESQKLN 276
RLSGGIVI+IH TIIM+RGRNY++PK IP F KRKAL K++ EQ++ S K
Sbjct: 289 ERLSGGIVIDIHQGTTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQSIGSLKDQ 348
Query: 277 IKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRI 336
I K E+ LR + A + R + +++ G +
Sbjct: 349 IVKWEKDLREL---------RADMAREEAARARWLEENPG-------------------M 380
Query: 337 EESEPPVDSDQEELDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSEN 396
EPP E+ D E+ D +D +++T + +++G + +
Sbjct: 381 APPEPPAPVSVEQSDDDSDEVTDISD-----------DDITEV-----DDLGPEYDDDSD 424
Query: 397 FRNSDMD-DISRRTVGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNR 455
+ D D D+ R+V DN + + DS+DE +S+ +G + SD S + R
Sbjct: 425 WEYPDSDVDLPDRSVPSNDNASTSNVSDSNDEWESNLYGSGDETGSDTDTS--TREIIGR 482
Query: 456 SRVERRKQEKFGRAR 470
S RRK + G+ R
Sbjct: 483 SYAIRRKPFEVGQNR 497
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%), Gaps = 2/174 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++Y L +A+KK L + LKK E E + HDPE+ TPE+ + K+G ++KN
Sbjct: 76 MTAEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKN 135
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+AT +ARLSGGIV++IH
Sbjct: 136 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHED 195
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
TIIM+RG+NY QP I P +L+++KAL K+++ AL + + +I ++EQ+L
Sbjct: 196 NTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQEL 249
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EER++Y L +A+KK L + LKK E E ++HDPE+ TPE+ + K+G ++KN
Sbjct: 116 MTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKN 175
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+AT +ARL+GGIV+ IH
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEE 235
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
TIIM+RG+NY QP I P TL ++KAL K+++ L + + I K+EQ+L
Sbjct: 236 DTIIMYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQEL 289
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 121/174 (69%), Gaps = 2/174 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+ +Y L +A+KK L + LKK E E + HDPE+ TPE+ + K+G ++KN
Sbjct: 56 MTAEEKNLYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKN 115
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A +ARLSGGIV++IH
Sbjct: 116 YVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHED 175
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
TIIM+RG+NY QP I P +L+++KAL K+++ AL + + I ++EQ+L
Sbjct: 176 NTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQEL 229
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 146/234 (62%), Gaps = 14/234 (5%)
Query: 54 DDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAK-KIKKKL 112
D RFS T Y ++K +SM+ KV R ++ + E+R + K KKK+
Sbjct: 86 DFVRFSITKDGY----------SAKEKKSMK-KVPRYVKMSKKAKLNELRFYRLKAKKKM 134
Query: 113 MTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRN 170
+ E R+ Y L++AK+K A L++KL+K E+P+ P +DPE+ T E+ K+ G +
Sbjct: 135 NSPNPEVRIRYKLEKAKRKEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGEKK 194
Query: 171 KNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIH 230
KNYVPVG RGVFGGVV NMHLHWK HETV+V C +I E A +ARLS GI I+I
Sbjct: 195 KNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIR 254
Query: 231 NVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
TII +RG+NY QPK + P +TL+K KAL K R+EQ+LE I+K+E++L
Sbjct: 255 PDNTIIFYRGKNYVQPKIMSPPDTLSKDKALEKYRYEQSLEHTSQFIEKLEKEL 308
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 128/191 (67%), Gaps = 2/191 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R KK + + MT EE+L+Y LK+A+KK +Q LKK E + + HDPE+ TPE
Sbjct: 115 LKFFRWKKKKEYERMTAEEKLLYKLKKAQKKEERYVQALKKIEPVDSSETTHDPEILTPE 174
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+TVQV F E++KE+A +
Sbjct: 175 EHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAEL 234
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
ARL+GGIV++IH TIIM+RG+NY QP I P TL+++KAL K+++ L + +
Sbjct: 235 ARLTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRNY 294
Query: 277 IKKIEQQLRRM 287
I ++EQ L +
Sbjct: 295 IPRLEQDLELL 305
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 138/204 (67%), Gaps = 3/204 (1%)
Query: 84 RSKVERRMQKESGKTMREIRRAK-KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKY 140
+S++ +R++ + E+R + K KKK+++ E R+ Y L++AK+K L++KL+K+
Sbjct: 51 KSQLNKRVKMSRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKF 110
Query: 141 ELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQ 200
++P+ PP DPE+ T E+ K+ G + K+YVPVG RGVFGGVV NMHLHWK HETV+
Sbjct: 111 DVPKSPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 170
Query: 201 VCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKA 260
V C ++ E A +ARLS GIVI+I TII +RG+NY QP+ + P NTL+K KA
Sbjct: 171 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPEVMSPPNTLSKVKA 230
Query: 261 LFKARFEQALESQKLNIKKIEQQL 284
L K R+EQ+LE I+++E++L
Sbjct: 231 LEKYRYEQSLEHTSQFIERLEKEL 254
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/180 (51%), Positives = 123/180 (68%), Gaps = 2/180 (1%)
Query: 107 KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYK 164
K KKK+ + E R+ Y L++AK+K L++KL+KYE+P P VHDPE+ T E+ K
Sbjct: 132 KAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLK 191
Query: 165 KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGG 224
+ G + KNYVPVG RGVFGGVV NMHLHWK HETV+V C ++ E A + RLS G
Sbjct: 192 RTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKG 251
Query: 225 IVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
VI+I TII +RG+NY QPK + P +TL+K+KAL K R+EQ+LE I+K+E++L
Sbjct: 252 TVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIEKLEKEL 311
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 125/186 (67%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R K K K E R+ Y L++AK+K L++KL+KYE+P +P VHDPE+ T E
Sbjct: 114 LKWFRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRVPEPVHDPEILTEE 173
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ K+ G + KNYVPVG RGVFGGVV NMHLHWK HET++V C ++ E A +
Sbjct: 174 EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEEL 233
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLS G VI+I TII +RG+NY QPK + P +TL+K+KAL K R+EQ+LE I+
Sbjct: 234 ARLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSQFIE 293
Query: 279 KIEQQL 284
++E++L
Sbjct: 294 QLEKEL 299
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 123/186 (66%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R K K K E R+ Y L++AK+K L++KL+KYE P P VHDPE+ T E
Sbjct: 117 LKWFRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEE 176
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ K+ G + KNYVPVG RGVFGGVV NMHLHWK HET++V C ++ E A +
Sbjct: 177 EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEEL 236
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLS G VI+I TII +RG+NY QPK + P +TL+K+KAL K R+EQ+LE I+
Sbjct: 237 ARLSKGTVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSLEHTSKFIE 296
Query: 279 KIEQQL 284
++EQ+L
Sbjct: 297 QLEQEL 302
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++ L++A+KK L++ +KK E E + HDPE+ TPE+ Y K+G + KN
Sbjct: 71 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 130
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T+QV F +++KE+A +ARL+GGIV+++H
Sbjct: 131 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 190
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
TIIM+RG+NY QP I P TL ++KAL K++ AL + + I ++EQ+L+ +
Sbjct: 191 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 250
Query: 291 PE 292
E
Sbjct: 251 AE 252
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 131/191 (68%), Gaps = 2/191 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R KK + + MT EE++++ + +A+KK L++ L+K E + + HDPE+ TPE
Sbjct: 155 LKLFRWKKKKEYERMTSEEKILFKMNKARKKEKRLVEALEKIEPADSSDTTHDPEILTPE 214
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+TV+V F E++KE+A +
Sbjct: 215 EHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAEL 274
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
ARL+GG+V++IH TIIM+RG+NY QP I P +L+++KAL K+++ L + + +
Sbjct: 275 ARLTGGLVLDIHEEDTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKH 334
Query: 277 IKKIEQQLRRM 287
I K+EQ+LR +
Sbjct: 335 IPKLEQELRFL 345
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R KK + + MT EE+++ L++A+KK L++ +KK E E + HDPE+ TPE
Sbjct: 792 LKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPE 851
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ Y K+G + KNYVPVG RG++ GV+ NMHLHWK H+T+QV F +++KE+A +
Sbjct: 852 EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVEL 911
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
ARL+GGIV+++H TIIM+RG+NY QP I P TL ++KAL K++ AL + +
Sbjct: 912 ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY 971
Query: 277 IKKIEQQLRRMGTNPE 292
I ++EQ+L+ + E
Sbjct: 972 IPRLEQELQLLQAQAE 987
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++ L++A+KK L++ +KK E E + HDPE+ TPE+ Y K+G + KN
Sbjct: 135 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T+QV F +++KE+A +ARL+GGIV+++H
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
TIIM+RG+NY QP I P TL ++KAL K++ AL + + I ++EQ+L+ +
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 291 PE 292
E
Sbjct: 315 AE 316
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/189 (47%), Positives = 131/189 (69%), Gaps = 4/189 (2%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPP-SVHDPELFTP 157
++ +R KK + + MT EE+++Y LK A+KK L+ LKK E PE P HDPE+ TP
Sbjct: 129 LKSLRWKKKKEIQRMTAEEKILYKLKLARKKEERLVAALKKIE-PEDPSEPTHDPEVLTP 187
Query: 158 EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM 217
E+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+AT
Sbjct: 188 EEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATE 247
Query: 218 IARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKL 275
+ARLSGGIV++I + TIIM+RG+NY QP I P +L+++KAL K+++ + L + +
Sbjct: 248 LARLSGGIVLDIQDGNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRR 307
Query: 276 NIKKIEQQL 284
I ++EQ+L
Sbjct: 308 YIPRLEQEL 316
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 119/177 (67%), Gaps = 2/177 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++Y L++A++K L + L K E E + HDPE+ TPE+ + K+G + KN
Sbjct: 1 MTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKN 60
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVP+G RG++ GV+ NMHLHWK H+T+QV F E++KE+A +ARL+GGIV++IH
Sbjct: 61 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEE 120
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
TIIM+RG+NY QP I P TL+++KAL K+++ L + + I ++E L +
Sbjct: 121 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELL 177
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K A+L++KLK+YE+ + V P+ E
Sbjct: 119 RRIRPKGKKIKQKFPTAEARLKYKIEKAKLKEAMLIEKLKRYEVAKAEGPVAKPDDLNGE 178
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVP+G RGVFGGV+ NMHLHWK HETV+V C +I+E A+ I
Sbjct: 179 ERFYLKKVSQKKSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEI 238
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGG+ INI T++ +RG++Y QP + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 239 ARLSGGVPINIVGNDTVVFYRGKDYVQPDVMSPIDTLSKKKALEKSKYEQSLETVRRFIA 298
Query: 279 KIEQQL 284
E++L
Sbjct: 299 VSEKEL 304
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R KK + + MT EE+++ L +A+KK L++ +KK E E + HDPE+ TPE
Sbjct: 735 LKFFRWKKKKEFERMTAEEKILNKLTKARKKEERLMETMKKLEPSESAETTHDPEILTPE 794
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ Y K+G + KNYVPVG RG++ GV+ NMHLHWK H+T+QV F +++ E+A +
Sbjct: 795 EHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVEL 854
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
ARL+GGIV+++H TIIM+RG+NY QP I P TL ++KAL K++ AL + +
Sbjct: 855 ARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY 914
Query: 277 IKKIEQQLRRMGTNPE 292
I ++EQ+L+ + E
Sbjct: 915 IPRLEQELQLLQAQAE 930
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 119/177 (67%), Gaps = 2/177 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++Y L++A++K L + L K E E + HDPE+ TPE+ + K+G + KN
Sbjct: 71 MTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKN 130
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVP+G RG++ GV+ NMHLHWK H+T+QV F E++KE+A +ARL+GGIV++IH
Sbjct: 131 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEE 190
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
TIIM+RG+NY QP I P TL+++KAL K+++ L + + I ++E L +
Sbjct: 191 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELL 247
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 2/180 (1%)
Query: 107 KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYK 164
K KKK+ + E R+ Y L++AK+K L++KL+KYE+P P VHDPE+ T E+ K
Sbjct: 120 KAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRTPEPVHDPEILTEEEKFYLK 179
Query: 165 KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGG 224
+ G + KNYVPVG RGVFGGVV NMHLHWK HETV+V C ++ E A + RLS G
Sbjct: 180 RTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKG 239
Query: 225 IVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
VI+I TI+ +RG+NY QPK + P TL+K+KAL K R+ Q+LE I+K+E++L
Sbjct: 240 TVIDIKPNNTIMFYRGKNYVQPKVMSPPETLSKQKALEKYRYLQSLEHTSQFIEKLEKEL 299
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 125/186 (67%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K L++KLKKYE+ + + P+ + E
Sbjct: 117 RRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGE 176
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVPVG RGVFGGV+ NMHLHWK HETV+V C +I+E A I
Sbjct: 177 ERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEI 236
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI +NI TI+ +RG+NY QP+ + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 237 ARLSGGIPVNIIGDDTIVFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLETVRRFIA 296
Query: 279 KIEQQL 284
E++L
Sbjct: 297 ISEKEL 302
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
Query: 89 RRMQKESGKTMREIRRAKKIKKKLMTD---EERLIYNLKRAKKKVALLLQKLKKYELPEL 145
RR++ + E+R + KK MT E R+ Y L++AK+K L++KL+K+++P+
Sbjct: 53 RRVKMSRKAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEEWLIEKLRKFDIPKA 112
Query: 146 PPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDN 205
P +DPE+ T E+ K+ G + KNYVPVG RGVFGGVV NMHLHWK HETV+V C
Sbjct: 113 PTEAYDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKP 172
Query: 206 FPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKAR 265
++ E A +ARLS GI+I+I TII +RG+NY QP+ + P +TL+K KAL K R
Sbjct: 173 CKVGQVYEYAEELARLSKGIMIDIKPNNTIIFYRGKNYVQPQVMSPPDTLSKSKALEKYR 232
Query: 266 FEQALESQKLNIKKIEQQL 284
+EQ+LE I+K+E +L
Sbjct: 233 YEQSLEHTSQFIEKLENEL 251
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 129/191 (67%), Gaps = 3/191 (1%)
Query: 84 RSKVERRMQKESGKTMREIRRAK-KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKY 140
+S++ ++ + + E+R + K KKK+ + E R+ Y L++AK+K L++KL+K+
Sbjct: 51 KSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLIEKLRKF 110
Query: 141 ELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQ 200
++P+ PP +DPE+ T E+ K+ G R K+YVPVG RGVFGGVV NMHLHWK HETV+
Sbjct: 111 DVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVK 170
Query: 201 VCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKA 260
V C ++ E A +ARLS GIVI+I TII +RG+NY +P+ + P NTL+K KA
Sbjct: 171 VICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNTLSKAKA 230
Query: 261 LFKARFEQALE 271
L K R+EQ+LE
Sbjct: 231 LEKYRYEQSLE 241
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 137/210 (65%), Gaps = 4/210 (1%)
Query: 77 SKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQK 136
S R ++ R K++ R + + ++ +R KK + + MT EE+++Y LK A+ K L+
Sbjct: 103 SGRPKAKRKKLKGR--RAVTRFLKSLRWKKKREFQRMTAEEKILYKLKLARNKEERLVAA 160
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
L K E + HDPE+ TPE+ + K+G ++KNYVPVG RG++ GV+ NMHLHWK H
Sbjct: 161 LTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKH 220
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNT 254
+T+QV F +++KE+A+ +ARLSGGIV++I TIIM+RG+NY QP I P T
Sbjct: 221 QTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVT 280
Query: 255 LTKRKALFKARFEQALESQKLNIKKIEQQL 284
L ++KAL K+++ + L + + I ++EQ+L
Sbjct: 281 LPRKKALDKSKYRERLRALRRYIPRLEQEL 310
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 126/191 (65%), Gaps = 2/191 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ R KK + + MT EE+++Y L++A++K +Q LKK E E + HDPE+ TPE
Sbjct: 74 LKFFRWKKKKEYERMTAEEKILYKLRKAQRKEERFVQALKKIEPKESSEATHDPEILTPE 133
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A +
Sbjct: 134 EHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAEL 193
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
AR +GGIV++IH TIIM+RG+NY QP I P TL+++KAL K++ L + +
Sbjct: 194 ARFTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKCRDGLRALRRY 253
Query: 277 IKKIEQQLRRM 287
I +++Q L +
Sbjct: 254 IPRLQQDLELL 264
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 130/207 (62%)
Query: 78 KRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKL 137
++GR ++ +K ++ R K K K E R+ Y L++AK+K L++KL
Sbjct: 94 QKGRQQSPPKKKMSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKL 153
Query: 138 KKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHE 197
+KY++P P VHDPE+ T E+ K+ G + KNYVPVG RGVFGGVV NMHLHWK HE
Sbjct: 154 RKYDVPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHE 213
Query: 198 TVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTK 257
TV+V C ++ E A + RLS G +I+I TI+ +RG+NY QP+ + P +TL+K
Sbjct: 214 TVKVVCKPCRPGQVYEYAEELTRLSKGTIIDIKPNNTIMFYRGKNYVQPQVMSPPDTLSK 273
Query: 258 RKALFKARFEQALESQKLNIKKIEQQL 284
+KAL K R+ Q+LE I+K+E++L
Sbjct: 274 QKALEKYRYLQSLEHTSQFIEKLEKEL 300
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 121/181 (66%)
Query: 104 RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAY 163
+ KK K++ EER+ + L++A+ K ALL+++LK+YE+P+L + P T E+
Sbjct: 403 KGKKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYM 462
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
KK+ + NYVPVG RGVFGGV+ NMH+HWK HETV+V C ++ E A IARLSG
Sbjct: 463 KKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSG 522
Query: 224 GIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQ 283
G I I TII +RG+NY QP+ + P +TL+K++AL K+++EQ+LES + I E++
Sbjct: 523 GTPIQIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKE 582
Query: 284 L 284
L
Sbjct: 583 L 583
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 125/188 (66%), Gaps = 2/188 (1%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
++ +R KK + + MT EE+++Y LK A+KK LL LKK E + HDPE+ TPE
Sbjct: 130 LKSLRWKKKKELQRMTAEEKILYKLKLARKKEERLLAALKKIEPNDPSEPTHDPEVLTPE 189
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ + K+G ++KNYVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+A+ +
Sbjct: 190 EHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASEL 249
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLN 276
A LSGGIV++I TIIM+RG+NY QP I P L ++KAL K+++ L + +
Sbjct: 250 AILSGGIVLSIQEGNTIIMYRGKNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRY 309
Query: 277 IKKIEQQL 284
I ++EQ+L
Sbjct: 310 IPRLEQEL 317
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 122/180 (67%), Gaps = 2/180 (1%)
Query: 107 KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYK 164
K K+K+ + E R+ Y L++AK+K L++KL+K+++P+LP DPE+ T E+ K
Sbjct: 202 KAKQKMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLK 261
Query: 165 KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGG 224
+ G + K+YVPVG RGVFGGVV NMHLHWK HETV+V C + E A +ARLS G
Sbjct: 262 RTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKG 321
Query: 225 IVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
IVI+I II +RG+NY QPK + P +TL+K KAL K R+EQ+LE I+++E++L
Sbjct: 322 IVIDIKPNSIIIFYRGKNYVQPKVMSPPDTLSKAKALEKYRYEQSLEHTSQFIERLEKEL 381
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 134/205 (65%), Gaps = 4/205 (1%)
Query: 84 RSKVERRMQKESGKTM--REIR--RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKK 139
R K++R+ +KE + R+ R K+ K+K EER+ Y L+RAK K ALL+++LK+
Sbjct: 69 RLKLQRKREKEKRRAANRRDPRCLTVKRKKQKFANAEERIKYKLERAKIKEALLVERLKR 128
Query: 140 YELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETV 199
YE+P++ P T E+ KK+ + NYVP+G RGVFGGV+ NMH+HWK HETV
Sbjct: 129 YEVPKVQGPEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETV 188
Query: 200 QVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRK 259
+V C+ ++ E A IARLSGGI I + TII +RG+NY QP+ + P +TL+K++
Sbjct: 189 KVICNFCKPGQVHEYAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQPEVMSPIDTLSKKR 248
Query: 260 ALFKARFEQALESQKLNIKKIEQQL 284
AL K+++EQ+LES + I E++L
Sbjct: 249 ALEKSKYEQSLESVRRFIAIAEKEL 273
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 129/189 (68%), Gaps = 4/189 (2%)
Query: 99 MREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPP-SVHDPELFTP 157
++ +R KK + + MT EE+++Y LK A+KK L+ LKK E PE P HDPE+ TP
Sbjct: 130 LKSLRWKKKKEFQRMTAEEKILYKLKLARKKEERLVVALKKIE-PEDPSEPTHDPEVLTP 188
Query: 158 EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM 217
E+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+A
Sbjct: 189 EEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIE 248
Query: 218 IARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKL 275
+A LSGGIV++I + TIIM+RG+NY QP I P +L+++KAL K+++ + L + +
Sbjct: 249 LATLSGGIVLDIQDGNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRR 308
Query: 276 NIKKIEQQL 284
I ++EQ+L
Sbjct: 309 YIPRLEQEL 317
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 121/181 (66%)
Query: 104 RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAY 163
+ KK K++ EER+ + L++A+ K ALL+++LK+YE+P+L + P T E+
Sbjct: 67 KGKKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYM 126
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
KK+ + NYVPVG RGVFGGV+ NMH+HWK HETV+V C ++ E A IARLSG
Sbjct: 127 KKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSG 186
Query: 224 GIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQ 283
G I I TII +RG+NY QP+ + P +TL+K++AL K+++EQ+LES + I E++
Sbjct: 187 GTPIQIIGDDTIIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKE 246
Query: 284 L 284
L
Sbjct: 247 L 247
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 124/186 (66%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K A+L++KLKKYE+ + + + E
Sbjct: 116 RRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGE 175
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVPVG RGVFGGV+ NMHLHWK HETV+V C +I+E A+ I
Sbjct: 176 ERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEI 235
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI IN TI+ +RG+NY QP + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 236 ARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIA 295
Query: 279 KIEQQL 284
E++L
Sbjct: 296 VSEKEL 301
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPP-SVHDPELFTPEQLQAYKKIGFRNK 171
MT EE+++Y LK A+KK L+ LKK E PE P HDPE+ TPE+ + K+G + K
Sbjct: 1 MTAEEKILYKLKLARKKEERLVVALKKIE-PEDPSEPTHDPEVLTPEEHFYFLKMGQKCK 59
Query: 172 NYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHN 231
NYVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+A +A LSGGIV++I +
Sbjct: 60 NYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQD 119
Query: 232 VKTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
TIIM+RG+NY QP I P +L+++KAL K+++ + L + + I ++EQ+L
Sbjct: 120 GNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQEL 174
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 121/181 (66%)
Query: 104 RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAY 163
+ KK K++ EER+ + L++A+ K ALL+++LK+YE+P+L + P T E+
Sbjct: 24 KGKKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQPVNLTGEERFYM 83
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
KK+ + NYVPVG RGVFGGV+ NMH+HWK HETV+V C ++ E A IARLSG
Sbjct: 84 KKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSG 143
Query: 224 GIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQ 283
G I I TII +RG+NY QP+ + P +TL+K++AL K+++EQ+LES + I E++
Sbjct: 144 GTPIQIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKE 203
Query: 284 L 284
L
Sbjct: 204 L 204
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 124/186 (66%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K A+L++KLKKYE+ + + + E
Sbjct: 116 RRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGE 175
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVPVG RGVFGGV+ NMHLHWK HETV+V C +I+E A+ I
Sbjct: 176 ERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEI 235
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI IN TI+ +RG+NY QP + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 236 ARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIA 295
Query: 279 KIEQQL 284
E++L
Sbjct: 296 VSEKEL 301
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 124/186 (66%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K A+L++KLKKYE+ + + + E
Sbjct: 116 RRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGE 175
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVPVG RGVFGGV+ NMHLHWK HETV+V C +I+E A+ I
Sbjct: 176 ERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEI 235
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI IN TI+ +RG+NY QP + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 236 ARLSGGIPINTIGNDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVRRFIA 295
Query: 279 KIEQQL 284
E++L
Sbjct: 296 VSEKEL 301
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EER++Y L +A+KK L + LKK E E ++HDPE+ TPE+ + K+G ++KN
Sbjct: 116 MTTEERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKN 175
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T+QV F E++KE+AT +ARL+GGIV+ IH
Sbjct: 176 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEE 235
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKAL 261
TIIM+RG+NY QP I P TL ++K L
Sbjct: 236 DTIIMYRGKNYSQPPTEIMSPRVTLPRKKVL 266
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 125/186 (67%), Gaps = 1/186 (0%)
Query: 100 REIR-RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
R IR + KKIK+K T E RL Y +++AK K A L++KLKKYE+ + + + + E
Sbjct: 117 RRIRPKGKKIKQKFPTPEARLKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGE 176
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+ + NYVPVG RGVFGGV+ NMHLHWK HETV+V C +I+E A I
Sbjct: 177 ERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEI 236
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI +N+ TI+ +RG++Y QP+ + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 237 ARLSGGIPVNVIGDDTIVFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLETVRRFIA 296
Query: 279 KIEQQL 284
E++L
Sbjct: 297 ISEKEL 302
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 122/176 (69%)
Query: 109 KKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGF 168
KKK + EER+ Y L++AK K ALL++KLK+YE+ ++ P T E+ KK+G
Sbjct: 115 KKKFVNAEERIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQ 174
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
+ NYVP+G RGVFGGV+ NMHLHWK HETV+V C+N ++++ A +A+LSGG+ +N
Sbjct: 175 KRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVN 234
Query: 229 IHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
I TII +RG+ Y QP+ + P +TL+K++A K+++EQ+LES + +I E++L
Sbjct: 235 IIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHSIAIAEKEL 290
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 136/218 (62%), Gaps = 2/218 (0%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKT--MREIRRAKKIKKKLMTDEERLIYNLKRA 126
R+S +S G ++ KV + + K +R R K KK E R+ Y+L++A
Sbjct: 48 RFSFGCPSSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKA 107
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
K+K A L++KL+K+E+P+ +DPE+ T E+ K+ G + KN+V +G RGVFGGVV
Sbjct: 108 KRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVV 167
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
NMH+HWK HETV+V C ++ E A + RLS GIVI+I +II +RG+NY QP
Sbjct: 168 LNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQP 227
Query: 247 KNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
+ + P NTL+K KAL K ++EQ+LE I+K+E++L
Sbjct: 228 EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKEL 265
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 136/218 (62%), Gaps = 2/218 (0%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKT--MREIRRAKKIKKKLMTDEERLIYNLKRA 126
R+S +S G ++ KV + + K +R R K KK E R+ Y+L++A
Sbjct: 110 RFSFGCPSSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKKKKTSPNPEVRIRYSLEKA 169
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
K+K A L++KL+K+E+P+ +DPE+ T E+ K+ G + KN+V +G RGVFGGVV
Sbjct: 170 KRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVV 229
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
NMH+HWK HETV+V C ++ E A + RLS GIVI+I +II +RG+NY QP
Sbjct: 230 LNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSIIFYRGKNYVQP 289
Query: 247 KNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
+ + P NTL+K KAL K ++EQ+LE I+K+E++L
Sbjct: 290 EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKEL 327
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/181 (44%), Positives = 121/181 (66%)
Query: 104 RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAY 163
+ KK K++ EER+ Y +++A+ K ALL+++LK+YE+P+ V P+ T E+
Sbjct: 121 KGKKKKQRFACAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYL 180
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
KK+ + NY+ +G RG+FGGVV NMH+HWK HETV+V C ++ E A +ARLSG
Sbjct: 181 KKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSG 240
Query: 224 GIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQ 283
GI + I TII +RG+NY QP+ + P +TL+K+KAL K+++EQ+LES + I E++
Sbjct: 241 GIPLQIIGDDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKE 300
Query: 284 L 284
L
Sbjct: 301 L 301
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 121/176 (68%)
Query: 109 KKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGF 168
KKK + EER+ Y L++AK K ALL+++LK+YE+ ++ P T E+ KK+G
Sbjct: 118 KKKFVNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQ 177
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
+ NYVP+G RGVFGGV+ NMHLHWK HETV+V C+N ++++ A +A+LSGG+ +N
Sbjct: 178 KRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVN 237
Query: 229 IHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
I TII +RG+ Y QP+ + P +TL+K++A K+++EQ+LES + I E++L
Sbjct: 238 IIGDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKEL 293
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 131/201 (65%)
Query: 84 RSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELP 143
R +++++ + + + R++R K K+K ER+ L+ A+ K ALL+++L++YE+P
Sbjct: 97 RMRLKQKRKAANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYEVP 156
Query: 144 ELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCC 203
++ + P T E+ KK+G + NYVP+G RGVFGGV+ NMH+HWK HETV+V C
Sbjct: 157 KVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYC 216
Query: 204 DNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFK 263
++ E A IARLSGGI I I TII +RG++Y QP+ + P +TL+K++AL K
Sbjct: 217 KPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEK 276
Query: 264 ARFEQALESQKLNIKKIEQQL 284
+++EQ+LES + I E++L
Sbjct: 277 SKYEQSLESVRRFIAIAEKEL 297
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 14/176 (7%)
Query: 116 EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVP 175
E R+ Y L++AK+K L++KL+KYE+P P VHDPE+ T E+ K+ G + KNYVP
Sbjct: 119 EVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVP 178
Query: 176 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTI 235
VG RGVFGGVV NMHLHWK HETV+V C ++ E A + RLS G VI+I TI
Sbjct: 179 VGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNNTI 238
Query: 236 IMFRGRNYRQPKNLIPFNTLTKRK------------ALFKARFE--QALESQKLNI 277
I +RG+NY QPK + P +TL+K+K ALFK R E + + S++ N+
Sbjct: 239 IFYRGKNYVQPKVMSPPDTLSKQKLEKELEDYQKHVALFKNRGETLETISSEETNV 294
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 123/186 (66%), Gaps = 1/186 (0%)
Query: 100 REIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQ 159
R + +K +K EER+ L+RA+ K A L+++LK+YE+P++ P T E+
Sbjct: 58 RSLTVKRKKGQKFANVEERIKTKLERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEE 117
Query: 160 LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKE-KIKEMATMI 218
KK+ + NYVP+G RGVFGGV+ NMH+HWK HETV+V C++ K +++E A I
Sbjct: 118 RFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEI 177
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIK 278
ARLSGGI I I T+I +RG+NY QPK + P +TL+K+KAL K+++EQ+LE+ + I
Sbjct: 178 ARLSGGIPIQIIGDDTVIFYRGKNYVQPKVMSPVDTLSKKKALEKSKYEQSLETVRHFIA 237
Query: 279 KIEQQL 284
E++L
Sbjct: 238 IAEKEL 243
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 54 DDN--RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAK-KIKK 110
DDN RF+F ++ N + T K + R+K+ R+ + + E+R + K KK
Sbjct: 85 DDNVVRFAFNNVSSSGNN---VVPTRKEKKWKRAKLSRKAK------VNELRFYRLKAKK 135
Query: 111 KLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGF 168
K+ + E R+ Y L++AK+K L++KL+KY++P+ P +DPE T E+ K+ G
Sbjct: 136 KMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGE 195
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKE-KIKEMATMIARLSGGIVI 227
+ KN+V VG RGVFGGVV N+HLHWK HETV+V C K ++ E A +ARLS GIVI
Sbjct: 196 KRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVI 255
Query: 228 NIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALE 271
++ TI+++RG+NY +P+ + P +TL+K KAL K R+EQ+LE
Sbjct: 256 DVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLE 299
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 142/224 (63%), Gaps = 15/224 (6%)
Query: 54 DDN--RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAK-KIKK 110
DDN RF+F ++ N + T K + R+K+ R+ + + E+R + K KK
Sbjct: 74 DDNVVRFAFNNVSSSGNN---VVPTRKEKKWKRAKLSRKAK------VNELRFYRLKAKK 124
Query: 111 KLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGF 168
K+ + E R+ Y L++AK+K L++KL+KY++P+ P +DPE T E+ K+ G
Sbjct: 125 KMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGE 184
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKE-KIKEMATMIARLSGGIVI 227
+ KN+V VG RGVFGGVV N+HLHWK HETV+V C K ++ E A +ARLS GIVI
Sbjct: 185 KRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVI 244
Query: 228 NIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALE 271
++ TI+++RG+NY +P+ + P +TL+K KAL K R+EQ+LE
Sbjct: 245 DVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLE 288
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 77 SKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQK 136
S R ++ R K++ R + + ++ +R KK + + MT EE+++Y LK A+ K L+
Sbjct: 103 SGRPKAKRKKLKGR--RAVTRFLKSLRWKKKREFQRMTAEEKILYKLKLARNKEERLVAA 160
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
L K E + HDPE+ TPE+ + K+G ++KNYVPVG RG++ GV+ NMHLHWK H
Sbjct: 161 LTKIEPDDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKH 220
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI--PFNT 254
+T+QV F +++KE+A+ +ARLSGGIV++I TIIM+RG+NY QP I P T
Sbjct: 221 QTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVT 280
Query: 255 LTKRK 259
L ++K
Sbjct: 281 LPRKK 285
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 137/221 (61%), Gaps = 14/221 (6%)
Query: 54 DDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAK-KIKKKL 112
D RFS + Y + +S++G+ V +M K++ + E+R + K KKK+
Sbjct: 13 DVVRFSISKCPY-------KIPSSEKGKKPTKHV--KMSKKA--KLNELRFYRLKAKKKM 61
Query: 113 MTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRN 170
+ E R+ Y L++AK+K A L++KL K+E+P+L DPE+ T E+ K+ G +
Sbjct: 62 NSPNPEVRIRYKLEKAKRKEAWLIEKLSKFEVPKLRAETCDPEMLTEEEKHYLKRTGEKK 121
Query: 171 KNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIH 230
KN++ VG RGVFGGVV NMHLHWK HETV++ C +I + A +ARLS GIVI+I
Sbjct: 122 KNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIR 181
Query: 231 NVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALE 271
+II +RG+NY QP + P +TL+K KAL K ++EQ+LE
Sbjct: 182 PNNSIIFYRGKNYVQPTVMSPPDTLSKNKALEKYKYEQSLE 222
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 15/224 (6%)
Query: 54 DDN--RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAK-KIKK 110
DDN RF+F + N + T K + R+K+ R+ + + E+R + K KK
Sbjct: 85 DDNVVRFAFNNVTGSGNN---VVPTRKEKKWKRAKMSRKAK------VNELRFYRLKAKK 135
Query: 111 KLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGF 168
K+ + E R+ Y L++AK+K L++KL+KY++P+ +DPE T E+ K+ G
Sbjct: 136 KMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGE 195
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKE-KIKEMATMIARLSGGIVI 227
+ KN+V VG RGVFGGVV N+HLHWK HETV+V C K ++ E A +ARLS GIVI
Sbjct: 196 KRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVI 255
Query: 228 NIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALE 271
++ TI+++RG+NY +P+ + P +TL+K KAL K R+EQ+LE
Sbjct: 256 DVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLE 299
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 107 KIKKKLMTD--EERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYK 164
K+K+K+ + E R+ Y L++AK+K L++KL+K+++P+LP DPE+ T E+ K
Sbjct: 137 KVKQKMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLK 196
Query: 165 KIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGG 224
+ G + K+YVPVG RGVFG VV NMHLHWK HETV+V C + E + R S G
Sbjct: 197 RTGEKKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKG 256
Query: 225 IVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKA 260
IVI+I II +RGRNY QPK + P +TL+K K
Sbjct: 257 IVIDIKPNNIIIFYRGRNYVQPKVMSPPDTLSKAKV 292
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 120 IYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVR 179
I +L +A+KK L + LKK E + + HDPE+ PE+ + K+G + KN VPVG R
Sbjct: 22 IPSLTKAQKKKKRLCEALKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRR 81
Query: 180 GVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFR 239
G++ GV+ +MHLH K H+T++V F ++KE+A +ARLSGGIV++IH TIIM+R
Sbjct: 82 GIYQGVILSMHLHXKKHQTLKV-VKTFSAAEVKEIAAELARLSGGIVLDIHEDNTIIMYR 140
Query: 240 GRNYRQPKNLI--PFNTLTKRKALFKA--RFEQAL 270
G+NY QP I P +L+++KAL K+ R EQ L
Sbjct: 141 GKNYSQPPTQIMSPRVSLSRKKALDKSKYRLEQEL 175
>gi|297603821|ref|NP_001054631.2| Os05g0145300 [Oryza sativa Japonica Group]
gi|255676015|dbj|BAF16545.2| Os05g0145300, partial [Oryza sativa Japonica Group]
Length = 92
Score = 127 bits (319), Expect = 2e-26, Method: Composition-based stats.
Identities = 74/82 (90%), Positives = 77/82 (93%)
Query: 126 AKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGV 185
AKKKVALLLQKLKKYELP+LP HDPEL T EQLQAYKKIGFRN+NYVPVGVRGVFGGV
Sbjct: 11 AKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGV 70
Query: 186 VQNMHLHWKFHETVQVCCDNFP 207
VQNMH+HWKFHETVQVCCDNFP
Sbjct: 71 VQNMHMHWKFHETVQVCCDNFP 92
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 126/216 (58%), Gaps = 14/216 (6%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+ ++ GR + +K + M++ S ++++E + K+++ KL + ++ RA++ LL
Sbjct: 529 AQARWGREVTAKEQEEMKEASSRSVKE-KLFKRLEHKLSIAQAKI----HRAER----LL 579
Query: 135 QKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
K++ + P D E+ T E+ +++IG R K Y+PVG+RGVF GV++NMHLHWK
Sbjct: 580 SKIEASMVLANPSD--DKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWK 637
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIP 251
E V++ ++E A ++ SGGI++ I V +I +RG+NYR+P N+ P
Sbjct: 638 HREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRP 697
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
N LTK KAL +A Q E+ +I ++E +R+M
Sbjct: 698 RNLLTKAKALKRAVAMQRHEALSQHIAELENNIRQM 733
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 158 EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM 217
E+L+ +++G ++ + V GV V + +H W+ E V++ +K +
Sbjct: 188 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 247
Query: 218 IARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ R +GG++I + ++++RG NY++P
Sbjct: 248 VERRTGGLII-WRSGSVMVVYRGSNYKRP 275
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 126/216 (58%), Gaps = 14/216 (6%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+ ++ GR + +K + M++ S ++++E + K+++ KL + ++ RA++ LL
Sbjct: 532 AQARWGREVTAKEQEEMKEASSRSVKE-KLFKRLEHKLSIAQAKI----HRAER----LL 582
Query: 135 QKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
K++ + P D E+ T E+ +++IG R K Y+PVG+RGVF GV++NMHLHWK
Sbjct: 583 SKIEASMVLANPSD--DKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWK 640
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIP 251
E V++ ++E A ++ SGGI++ I V +I +RG+NYR+P N+ P
Sbjct: 641 HREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPINIRP 700
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
N LTK KAL +A Q E+ +I ++E +R+M
Sbjct: 701 RNLLTKAKALKRAVAMQRHEALSQHIAELENNIRQM 736
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 158 EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM 217
E+L+ +++G ++ + V GV V + +H W+ E V++ +K +
Sbjct: 191 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 250
Query: 218 IARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ R +GG++I + ++++RG NY++P
Sbjct: 251 VERRTGGLII-WRSGSVMVVYRGSNYKRP 278
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 17/243 (6%)
Query: 48 PTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKK 107
P H DD+ L + A + + GR + +K + M++ S ++++E + K+
Sbjct: 308 PVVHSMDDS-LDGHALAGTLAEFQEAQA--RWGREVTAKEQEEMKEASSRSVKE-KLFKR 363
Query: 108 IKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIG 167
++ KL + ++ RA++ LL K++ + P D E+ T E+ +++IG
Sbjct: 364 LEHKLSIAQAKI----HRAER----LLSKIEASMVLANPSD--DKEMITDEERSVFRRIG 413
Query: 168 FRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVI 227
R K Y+PVG+RGVF GV++NMHLHWK E V++ ++E A ++ SGGI++
Sbjct: 414 LRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILV 473
Query: 228 NIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
I V +I +RG+NYR+P N+ P N LTK KAL +A Q E+ +I ++E +
Sbjct: 474 AIERVTKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHEALSQHIAELENNI 533
Query: 285 RRM 287
R+M
Sbjct: 534 RQM 536
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 126/216 (58%), Gaps = 14/216 (6%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+ ++ GR++ SK ++ M++ S ++ +E + ++++ KL + ++ RA K LL
Sbjct: 521 AQARWGRNVTSKEQQEMKEASFRSEKE-KLFRRLEHKLSIAQAKI----HRAGK----LL 571
Query: 135 QKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
K++ + P D E+ T E+ +++IG + K Y+PVG+RGVF GV++NMHLHWK
Sbjct: 572 SKIEASMVLANPSD--DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWK 629
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV---KTIIMFRGRNYRQPKNLIP 251
E V++ ++E A ++ SGGI++ I V +I +RG+NYR+P N+ P
Sbjct: 630 HREVVKLITKQKTLAFVEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRP 689
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
N LTK KAL +A Q E+ +I ++E +++M
Sbjct: 690 RNLLTKAKALKRAVAMQRHEALSQHIDQLEINMKQM 725
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 122/216 (56%), Gaps = 14/216 (6%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+ ++ GR + SK + M++ S + +E + ++++ KL + ++ RA K LL
Sbjct: 524 AQARWGRDVTSKEQEEMKEASSRLEKE-KIFRRLEHKLSIAQAKI----HRAGK----LL 574
Query: 135 QKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
K++ + P D E+ T E+ +++IG + K Y+PVG+RGVF GV++NMHLHWK
Sbjct: 575 SKIEASMILANPSD--DREMITDEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWK 632
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIP 251
E V++ + E A ++ SGGI++ + V +I +RG+NYR+P N+ P
Sbjct: 633 HREVVKLITKQKTLAFVNETARLLEYESGGILVAVERVPKGYALIFYRGKNYRRPINIRP 692
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
N LTK KAL +A Q E+ +I ++E +++M
Sbjct: 693 RNLLTKAKALKRAVAMQRHEALSQHIAQLESNMKQM 728
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKE 213
+ T E+ +++IG R K Y+P+GVRGVF GV++NMHLHWK E V++ ++E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 214 MATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQAL 270
A ++A SGGI++ I V +I +RG+NYR+P N+ P N LTK KAL +A Q
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRH 120
Query: 271 ESQKLNIKKIEQQLRRM 287
E+ +I ++E +++M
Sbjct: 121 EALSQHIDQLESNIKQM 137
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 27/228 (11%)
Query: 70 WSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKK 129
W R +ST +R RM +E K + + KKI+ KL + + + RA+K
Sbjct: 457 WGRDISTEER---------ERMMQEVAKA-KNAKLVKKIECKLAVAQAKRL----RAEK- 501
Query: 130 VALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
LL K++ LP P +D E T E+ ++ +G R K Y+P+G+RGVF GV++NM
Sbjct: 502 ---LLAKIEASLLPVGPD--YDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENM 556
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQP 246
HLHWK E V++ +++ A ++ SGGI++ I V ++I +RG+NYR+P
Sbjct: 557 HLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRP 616
Query: 247 KNLIPFNTLTKRKALFKARFEQALESQKLNI----KKIEQQLRRMGTN 290
L P N LTK KAL ++ Q E+ ++ +KIE+ +++G +
Sbjct: 617 MTLRPRNLLTKAKALQRSVVMQRHEALSQHVTELGEKIEEMKKKLGLS 664
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 3/140 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ +++IG + K Y+PVG+RGVF GV++NMHLHWK E V++
Sbjct: 43 DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAF 102
Query: 211 IKEMATMIARLSGGIVINIHNV---KTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 267
++E A ++ SGGI++ I V +I +RG+NYR+P N+ P N LTK KAL +A
Sbjct: 103 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAM 162
Query: 268 QALESQKLNIKKIEQQLRRM 287
Q E+ +I ++E +++M
Sbjct: 163 QRHEALSQHIDQLEINMKQM 182
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 13/188 (6%)
Query: 103 RRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQA 162
R K+I+ KL + + +RA+K LL K++ +P P +D E+ + E+
Sbjct: 611 RVVKRIQHKLNLAQSKF----QRAEK----LLSKIEASMIPNGPD--YDQEVISEEERAM 660
Query: 163 YKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLS 222
++K+G + K Y+P+G+RGVF GV++NMHLHWK E V++ + ++E A ++ S
Sbjct: 661 FRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYES 720
Query: 223 GGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKK 279
GG+++ I V +I +RG+NYR+P +L P N LTK KAL ++ Q E+ +I +
Sbjct: 721 GGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISE 780
Query: 280 IEQQLRRM 287
+E+ + +M
Sbjct: 781 LERTIEQM 788
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 23/222 (10%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK 128
RW R +S +R + M E + ++ K +R+I E I+ + K
Sbjct: 523 RWGREISPDEREKMM----EEAAKAKTAKLVRQI--------------EHKIFIAQTKKL 564
Query: 129 KVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
+ LL K++ +P P +D E T E+ ++K+G R K Y+P+G+RGVF GVV+N
Sbjct: 565 RAEKLLAKIEASMVPAGPD--YDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVEN 622
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQ 245
MHLHWK E V++ +++ A ++ SGGI++ I V +I +RG+NY++
Sbjct: 623 MHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKR 682
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P L P N LTK KAL + Q E+ +I ++E+ + +M
Sbjct: 683 PITLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQM 724
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 27/232 (11%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK 128
RW R +ST +R +M +E+ K + R K+ + KL + + K
Sbjct: 545 RWGRDISTEER---------EKMIEEASKA-KTARLVKRTEHKLAIAQAK--------KL 586
Query: 129 KVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
+ LL K++ +P P D E + E+ ++++G R K Y+P+G+RGVF GV++N
Sbjct: 587 RAESLLSKIETTMVPSGPD--FDQETISEEERVMFRRVGLRMKAYLPLGIRGVFDGVIEN 644
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQ 245
MHLHWK E V++ +++ A ++ SGG+++ I V +I +RG+NYR+
Sbjct: 645 MHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAIERVPKGFALIYYRGKNYRR 704
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNI----KKIEQQLRRMGTNPED 293
P ++ P N LTK KAL ++ Q E+ +I K IE+ ++ MG + E+
Sbjct: 705 PISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEEMVKEMGLSKEE 756
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 158 EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM 217
E+L+ +++G + + + G+ V++N+H W+ E V++ +K +
Sbjct: 204 EELRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEI 263
Query: 218 IARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ R +GG+VI +++FRG NY+ P
Sbjct: 264 VERRTGGLVI-WRAGSVMVVFRGTNYQGP 291
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 23/199 (11%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK 128
RW + + + R + MR + R +K++ KL E++L+ +RA
Sbjct: 460 RWGKCLDQNHREKIMRE----------AEIARHANLVRKLESKLAFAEKKLM-KAERALS 508
Query: 129 KVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
KV + L+ ++ DPE T E+ ++K+G R K ++ +G RGVF G V+N
Sbjct: 509 KVEVFLKPAERQA---------DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 559
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQ 245
MHLHWK+ E V++ E++K++A + SGGI++++ V II+FRG++Y++
Sbjct: 560 MHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVDRVSKGYAIIVFRGKDYQR 619
Query: 246 PKNLIPFNTLTKRKALFKA 264
P L P N LTKRKAL ++
Sbjct: 620 PSKLRPGNLLTKRKALARS 638
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ + + ++ K+ V V GV VV ++H WK E V+V + P +
Sbjct: 102 ELTLPESELRRLRNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNM 161
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ M ++ R +GG+VI + ++ ++RG +Y P
Sbjct: 162 RRMHEILERKTGGLVI-WRSGTSVSLYRGVSYEDP 195
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 18/218 (8%)
Query: 75 STSKRGRSMRSKVERRMQKES--GKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVAL 132
+ S+ GR + ++ +M +ES KT R +RR I+ KL + + + RA+K
Sbjct: 282 AQSRWGREITAEEREKMVEESSRAKTARLVRR---IEHKLGVAQAKKL----RAEK---- 330
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
LL K++ + P D E T E+ ++++G R Y+P+G+RGVF GVV+NMHLH
Sbjct: 331 LLSKIEASMILSSPDD--DQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLH 388
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK E V++ ++E A ++ SGGI+++I V ++ +RG+NYR+P L
Sbjct: 389 WKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKNYRRPIAL 448
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P N LTK KAL ++ Q E+ +I ++EQ + +M
Sbjct: 449 RPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQM 486
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 134/252 (53%), Gaps = 29/252 (11%)
Query: 43 SNMIRPTTHFCDDNRFSFTPLNYPFN---RWSRAMSTSKRGRSMRSKVERRMQKESGKTM 99
S ++ P+T + N S L + +W +++ M+ +VER M
Sbjct: 575 STLVVPSTK-ANQNLVSAGTLGETLDATGKWGKSLDNDDHVEEMKQEVER---------M 624
Query: 100 REIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQ 159
R + +K+++KL E++L+ +A++ +A + + LK E D E T E+
Sbjct: 625 RSAKLVRKLERKLAFAEKKLL----KAERALAKVEESLKPAE------QRTDLEGITEEE 674
Query: 160 LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIA 219
++K+G R K ++ +G RGVF G V+NMHLHWK+ E +++ E K++A +
Sbjct: 675 RFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALE 734
Query: 220 RLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 276
SGGI++++ + +I++RG++Y++P L P N LTKRKAL ++ Q E+ +
Sbjct: 735 AESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKH 794
Query: 277 IKKIE---QQLR 285
I+ ++ +QLR
Sbjct: 795 IEAVQTRSEQLR 806
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 16/217 (7%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK-KVALL 133
+ ++ GR + ++ +M +E+ + + R K+I+ KL L +AKK + L
Sbjct: 555 AQARWGREISAEEHEKMIEEASRA-KSARVVKRIEHKLA---------LAQAKKLRAERL 604
Query: 134 LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
L K++ +P P D E T E+ ++++G R K Y+ +GVRGVF GV++NMHLHW
Sbjct: 605 LAKIEASMIPAGPSD--DQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHW 662
Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLI 250
K E V++ +++ A ++ SGGI++ I V +I +RG+NYR+P +L
Sbjct: 663 KHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLR 722
Query: 251 PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P N LTK KAL ++ Q E+ +I ++E+ + +M
Sbjct: 723 PRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQM 759
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 23/222 (10%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK 128
RW R +S +R +M +E+ KT + + ++I+ K+ + + + RA+K
Sbjct: 523 RWGREISPEER---------EKMVEEAAKT-KTAKLVRQIEHKIFIAQTKKL----RAEK 568
Query: 129 KVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
LL K++ +P P +D E T E+ ++K+G R K Y+P+G+RGVF GVV+N
Sbjct: 569 ----LLAKIEASMVPAGPD--YDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVEN 622
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQ 245
MHLHWK E V++ +++ A ++ SGGI++ I V +I +RG+NY++
Sbjct: 623 MHLHWKHRELVKLMTKQKTVAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKR 682
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P L P N LTK KAL + Q E+ +I ++E+ + +M
Sbjct: 683 PITLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQM 724
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 129/216 (59%), Gaps = 18/216 (8%)
Query: 77 SKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQK 136
+K G+++ + ++++ +E + +R KK+++KL E +L +RA+K L K
Sbjct: 563 AKWGKTLDERHKQKIMREV-EQLRHANLVKKLEQKLSFAERKL----RRAEKA----LMK 613
Query: 137 LKKYELPELPPSVH--DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
++ + L PS + DPE T E+ ++K+G R K ++ +G RGVF G ++NMHLHWK
Sbjct: 614 VESF----LKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWK 669
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIP 251
+ E V++ E++K++A + SGG+++++ V ++I++RG++Y++P L P
Sbjct: 670 YRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRP 729
Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
N LTKRKAL ++ Q E+ +I ++ ++ R+
Sbjct: 730 KNLLTKRKALARSIELQRHEALMNHISTLQSKVGRI 765
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ K+ F K+ +G GV VV +H WK E V++ + +
Sbjct: 208 ELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNM 267
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K M ++ R +GG+VI + ++ ++RG +Y P
Sbjct: 268 KRMHEILERKTGGLVI-WRSGNSVSLYRGVSYEVP 301
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 13/188 (6%)
Query: 103 RRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQA 162
R K+I+ KL + + +RA+K LL K++ +P P +D E+ + E+
Sbjct: 611 RVVKRIQHKLNLAQSKF----QRAEK----LLSKIEASMIPNGPD--YDQEVISEEERAM 660
Query: 163 YKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLS 222
++K+G + K Y+P+G+RGVF GV++NMHLHWK E V++ +++ A ++ S
Sbjct: 661 FRKVGLKMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYES 720
Query: 223 GGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKK 279
GG+++ I V +I +RG+NYR+P +L P N LTK KAL ++ Q E+ +I +
Sbjct: 721 GGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISE 780
Query: 280 IEQQLRRM 287
+E+ + +M
Sbjct: 781 LERTIEQM 788
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 14/211 (6%)
Query: 80 GRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKK 139
GR + S+ RM KE+ K + ++ K+I+ K+ +L RA++ LL K++
Sbjct: 557 GRDVSSEEHERMIKEATKA-KNVKLVKQIEHKISLAANKL----HRAER----LLAKIES 607
Query: 140 YELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETV 199
+P P +D E T E+ +++IG R K Y+ +G+RGVF GV++NMHLHWK E V
Sbjct: 608 SMVPVGPD--YDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELV 665
Query: 200 QVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLT 256
++ + +++ A ++ SGGI++ I V II +RG+NY++P L P N LT
Sbjct: 666 KLVTKQKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLTLRPRNLLT 725
Query: 257 KRKALFKARFEQALESQKLNIKKIEQQLRRM 287
K KAL ++ E+ +I ++E + +M
Sbjct: 726 KAKALKRSVAMLRHEALSNHITELETTIEQM 756
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 121/217 (55%), Gaps = 16/217 (7%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK-KVALL 133
+ ++ GR + ++ +M +E+ + + R K+I+ KL L +AKK + L
Sbjct: 555 AQARWGREISAEEHEKMIEEASRA-KSARVVKRIEHKLA---------LAQAKKLRPERL 604
Query: 134 LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
L K++ +P P D E T E+ ++++G R K Y+ +GVRGVF GV++NMHLHW
Sbjct: 605 LAKIEASMIPAGPSD--DQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHW 662
Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLI 250
K E V++ +++ A ++ SGGI++ I V +I +RG+NYR+P +L
Sbjct: 663 KHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVSLR 722
Query: 251 PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P N LTK KAL ++ Q E+ +I ++E+ + +M
Sbjct: 723 PRNLLTKAKALKRSVAMQRHEALSQHISELERTIEQM 759
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 108/184 (58%), Gaps = 18/184 (9%)
Query: 123 LKRAKKKVALLLQKLKKYELPE------LPPS--VHDPELFTPEQLQAYKKIGFRNKNYV 174
++R +KK+A +KL++ E L PS DPE T E+ ++K+G R K ++
Sbjct: 594 VRRLEKKLAFAQRKLRRAERTLNKVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFL 653
Query: 175 PVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK- 233
+G RGVF G V+NMHLHWK+ E V++ E++K++A + SGG+++++ +
Sbjct: 654 LLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISK 713
Query: 234 --TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA-------RFEQALESQKLNIKKIEQQL 284
II++RG++Y++P L P N LTKRKAL ++ + + + ++ ++KI ++
Sbjct: 714 GYAIIVYRGKDYQRPSMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIRSEI 773
Query: 285 RRMG 288
+MG
Sbjct: 774 EQMG 777
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ + + + K+ VG RGV VV +H WK E +V + P +
Sbjct: 209 ELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNM 268
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K M ++ +GG+VI + T+ ++RG +Y P
Sbjct: 269 KRMHEILENKTGGLVI-WRSGATVSLYRGVSYEDP 302
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 13/136 (9%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
LL K++ LP P +D E T E+ +++IG R K Y+P+G+RGVF GV++NMHLH
Sbjct: 600 LLAKIEVSMLPSGPD--YDQETITDEERAVFRRIGLRMKAYLPLGIRGVFDGVIENMHLH 657
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARL----SGGIVINIHNVK---TIIMFRGRNYRQ 245
WK E V++ K+K A ARL SGGI++ I V +I +RG+NYR+
Sbjct: 658 WKHRELVKLIS----KQKTLAFAEDTARLLEYESGGILVAIERVPKGFALIYYRGKNYRR 713
Query: 246 PKNLIPFNTLTKRKAL 261
P NL P N LTK KAL
Sbjct: 714 PINLRPRNLLTKAKAL 729
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 116/213 (54%), Gaps = 18/213 (8%)
Query: 85 SKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPE 144
+K++ + + +T+ R A ++K L + L A+KK+ + L K E
Sbjct: 527 TKLDENHEDKMARTVEAARHADLVRK--------LEWKLSLAQKKMEKAERVLGKVETAL 578
Query: 145 LPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCD 204
P PE T E+ ++K+G R K ++ +G RGVF G ++NMHLHWK+ E V++
Sbjct: 579 RPTEDSRPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVK 638
Query: 205 NFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKAL 261
+K +A + SGGI++++ V I++FRG+NYR+P +L P N L+KRKAL
Sbjct: 639 AKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKAL 698
Query: 262 FKA---RFEQALESQ--KLN--IKKIEQQLRRM 287
++ + QAL KLN + +++ +L +M
Sbjct: 699 ARSIELQRHQALSRHFAKLNRKVAQLKAELVQM 731
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P +L+ + R K+ VG GV +V+ + WK E V+V P +
Sbjct: 171 ELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNM 230
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKN 248
+ ++ R +GG+VI + ++ ++RG +Y +P+
Sbjct: 231 RLFHEILERKTGGLVI-WRSGTSVSLYRGVDYDEPET 266
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 109/202 (53%), Gaps = 17/202 (8%)
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
K K LL +L+K E+ + P D E T E+ +KIG + K ++ +G RGVF G +
Sbjct: 557 KAKAEKLLSELEKSEMSQQPEK--DKEGITEEERYMLRKIGLKMKPFLLMGERGVFDGTI 614
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNY 243
+NMHLHWK+ E V++ C + ++ +A + SGGI++ + V II++RG+NY
Sbjct: 615 ENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYRGKNY 674
Query: 244 RQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRV 303
+P L P L+KR+A+ ++ Q ES KL++ ++ + + +Q V
Sbjct: 675 TRPACLRPPTLLSKRQAMKRSLEAQRRESLKLHVLRLTSNIDHL-----------KLQLV 723
Query: 304 ASTFFNAIDQ-KEGSPYVFRGE 324
+ TF N+ D S ++F G+
Sbjct: 724 SLTFLNSFDCFYSPSTFLFVGK 745
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P E+L+ + IG K + VG G+ G+V +H W+ E V++ C++ + +
Sbjct: 159 ELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNM 218
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+V+ K I+++RG +Y+ P
Sbjct: 219 KRTHDLLERKTGGLVVWRVGSK-IVLYRGADYKYP 252
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 13/220 (5%)
Query: 71 SRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKV 130
S +M ++ + RS+ + M + + ++R K+++ KL I +RA ++
Sbjct: 413 SESMEMRRQWEAQRSEKDDEMDRNAAVVALKVREQKRLEAKLAAA----ISKKRRADLQI 468
Query: 131 ALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMH 190
L + L E P D E T E+ +KK+G R ++ +G RGVF GV++NMH
Sbjct: 469 VKLERSLLLSEHP------RDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMH 522
Query: 191 LHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV---KTIIMFRGRNYRQPK 247
LHWK E V++ K E+A M+ SGGI++ + + II++RG+NY++P
Sbjct: 523 LHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPA 582
Query: 248 NLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
L P + LTKRKAL +++ Q ++ +L+I+K+E+ + ++
Sbjct: 583 ELRPRSLLTKRKALARSKEIQRKKALQLHIEKLEELIMKL 622
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 143 PELPPSVHDPELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P+LP EL PE +L+ ++I R N + VG GV VVQ++H W+ E V++
Sbjct: 70 PKLPCLA---ELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKI 126
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNY 243
CD +K+ + +GG+V+ I++RG+ Y
Sbjct: 127 QCDGPAAINMKQTHDELETKTGGLVV-WRTGGMAILYRGKGY 167
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKE 213
+ T E+ +++IG R K Y+P+GVRGVF GV++NMHLHWK E V++ ++E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 214 MATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQAL 270
A ++A SGGI++ I V +I +RG+NYR+P N+ P N LTK KAL +A Q
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRH 120
Query: 271 ESQKLNIKKIEQQLRRM 287
E+ +I ++E +++M
Sbjct: 121 EALSQHIDQLESNIKQM 137
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 74 MSTSKRGRSMRSKVERRMQKESGKTMREIRR----AKKIKKKLMTDEERLIYNLKRAKKK 129
+ TSK G ++ +E R E + E R+ A+K K+ D R L KK+
Sbjct: 670 VDTSKVG-TLEEAMETRAAWEGWQKSDEARKERIAARKAKRGQAMDRIRQKMKLALQKKE 728
Query: 130 VALL-LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
A+ L K+ P P D E + + Y++ G ++K Y+ +G RGVFGG V+N
Sbjct: 729 RAMAELAKIDAKTNPTDAPL--DKEFLSEAERYMYRQQGLKHKGYLLLGRRGVFGGTVEN 786
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV---KTIIMFRGRNYRQ 245
MHLHWK E V++ P + ++ A M+ R SGGI+++I N + II++RG+NY++
Sbjct: 787 MHLHWKHRELVKILV-KAPIAEAQQTAKMLERESGGILVDIVNTSKGQAIIVYRGKNYQR 845
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P L P + LTKR+AL ++ Q ++S + +I+ + ++ M
Sbjct: 846 PSELRPRHLLTKRQALKRSLEVQRMQSLEKHIQILMTEIETM 887
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 147 PSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF 206
PSV + L PE L+ + +G + + + +G GV G+V+ +H W+ E +V CD
Sbjct: 318 PSVAELTLPEPE-LRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAP 376
Query: 207 PKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+K+ + RL+GG+VI +++RG++Y P
Sbjct: 377 LSMNMKKAHEDLERLTGGLVI-WRAGSAAVVYRGKDYVHP 415
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 163 YKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF-PKEKIKEMATMIARL 221
Y +IG +N+N+ VG RG++GGV+ N+H +WKFHETV++ C E+ + + +ARL
Sbjct: 133 YARIGNKNQNFASVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAELARL 192
Query: 222 SGGIVINIHNVKTIIMFRGRNYRQPKNLIP--FNTLTKRKALFKARFEQALESQKLNIKK 279
SGGIV+++ +T+IMFRG+NY+ P+ L P + +R A + ++AL+SQ + +
Sbjct: 193 SGGIVLDVLEDRTVIMFRGKNYQTPEELYPPTLEAVDRRNADSRHHIQRALDSQ---VYR 249
Query: 280 IEQQLRR 286
+ Q + R
Sbjct: 250 LGQYISR 256
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 109/190 (57%), Gaps = 9/190 (4%)
Query: 101 EIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQL 160
E+ R + +KL ER + +R K L K++++ P P+ DPE T E+
Sbjct: 597 EVARHANLVRKL----ERRLALAERKLMKAENALSKVEEFLKPANRPA--DPESITDEER 650
Query: 161 QAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIAR 220
++K+G R K ++ +G RGVF G V+NMHLHWK+ E V++ +++K+ A +
Sbjct: 651 FMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALES 710
Query: 221 LSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNI 277
SGG+++++ V I++FRG++Y++P L P N LTKRKAL ++ Q E+ +I
Sbjct: 711 ESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQRREALYNHI 770
Query: 278 KKIEQQLRRM 287
+++ + ++
Sbjct: 771 SALQRNVEKL 780
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ + + R KN +G GV VV + WK E V++ C+ +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
+ + ++ R +GG+VI + ++ ++RG +Y P L
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVPVQL 313
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 109/190 (57%), Gaps = 9/190 (4%)
Query: 101 EIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQL 160
E+ R + +KL ER + +R K L K++++ P P+ DPE T E+
Sbjct: 597 EVARHANLVRKL----ERRLALAERKLMKAENALSKVEEFLKPANRPA--DPESITDEER 650
Query: 161 QAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIAR 220
++K+G R K ++ +G RGVF G V+NMHLHWK+ E V++ +++K+ A +
Sbjct: 651 FMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALES 710
Query: 221 LSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNI 277
SGG+++++ V I++FRG++Y++P L P N LTKRKAL ++ Q E+ +I
Sbjct: 711 ESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQRREALYNHI 770
Query: 278 KKIEQQLRRM 287
+++ + ++
Sbjct: 771 SALQRNVEKL 780
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ + + R KN +G GV VV + WK E V++ C+ +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
+ + ++ R +GG+VI + ++ ++RG +Y P L
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVPVQL 313
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 111/193 (57%), Gaps = 13/193 (6%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+T K G+++ K+ + +R +K+++KL E +L+ +A++ +A +
Sbjct: 563 ATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLL----KAERGLAKVE 618
Query: 135 QKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194
+ LK E E P S+ D E F ++K+G + K ++ +G RGVF G V+NMHLHWK
Sbjct: 619 ECLKPAEQREDPDSITDEERFM------FRKLGLKMKAFLLLGRRGVFDGTVENMHLHWK 672
Query: 195 FHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIP 251
+ E V++ + +K++A + SGGI+++I V II++RG++Y++P L P
Sbjct: 673 YRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPTMLRP 732
Query: 252 FNTLTKRKALFKA 264
N LTKRKAL ++
Sbjct: 733 KNLLTKRKALARS 745
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
LK+ +K + + + L+ ELP D E + E+ ++KIG K ++ +G RG+F
Sbjct: 657 LKKTEKALRKVQEDLEPAELP------MDLETLSDEERFLFRKIGLSMKPFLLLGTRGIF 710
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFR 239
G V+NMHLHWK+ E V++ ++K +A + SGG+++++ II++R
Sbjct: 711 DGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYR 770
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPED 293
G+NY++P L P N LTKR+AL ++ Q E+ K +I +E++++ + + PE+
Sbjct: 771 GKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPEE 824
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 118 RLIYNLKRAKKKVALLLQKLKKYELPELPP-SVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
+L + L A+KK+ + L K E P PE T E+ ++K+G R K ++ +
Sbjct: 546 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 605
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK--- 233
G RGVF G ++NMHLHWK+ E V++ +K +A + SGGI++++ V
Sbjct: 606 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 665
Query: 234 TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
I++FRG+NYR+P +L P N L+KRKAL ++ Q ++ + K+ +++ R+
Sbjct: 666 AIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERL 719
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 140 YELPELPP-----SVHDP----ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
+E P PP S P EL P +L+ + R K+ VG GV +V+ +
Sbjct: 144 WERPMPPPEAAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKI 203
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
WK E V+V P ++ ++ R +GG+VI + ++ ++RG +Y +P
Sbjct: 204 KEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVDYDEP 259
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 118 RLIYNLKRAKKKVALLLQKLKKYELPELPPS--VHDPELFTPEQLQAYKKIGFRNKNYVP 175
+L + L A+K++A + L K E L P+ PE T E+ ++K+G R K ++
Sbjct: 563 KLEWKLALAEKRIAKAERVLGKVET-ALKPTEDTKPPETITDEERFMFRKLGLRMKAFLL 621
Query: 176 VGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK-- 233
+G RGVF G ++NMHLHWK+ E V++ +K A + SGG+++++ V
Sbjct: 622 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKG 681
Query: 234 -TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
I++FRG++Y++P L P N L+KRKAL ++ Q +E+ +I+K+ +++ ++
Sbjct: 682 YAIVVFRGKDYKRPSMLRPRNLLSKRKALARSIELQRMEALGRHIEKLNRRVNQL 736
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 13/175 (7%)
Query: 93 KESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDP 152
K+ + +R +K+++KL E +L+ +R KV + L+ ++ E DP
Sbjct: 586 KQEVEILRHENLVRKLERKLAFAERKLL-KAERGLAKVEVCLKPAEQRE---------DP 635
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E T E+ ++K+G + K ++ +G RGVF G V+NMHLHWK+ E V++ + +K
Sbjct: 636 ESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVK 695
Query: 213 EMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
++A + SGGI+++I V II++RG++Y++P L P N LTKRKAL ++
Sbjct: 696 KVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARS 750
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
LK+ +K + + + L+ ELP D E + E+ ++KIG K ++ +G RG+F
Sbjct: 654 LKKTEKALRKVQEDLEPAELP------MDLETLSDEERFLFRKIGLSMKPFLLLGTRGIF 707
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFR 239
G V+NMHLHWK+ E V++ ++K +A + SGG+++++ II++R
Sbjct: 708 DGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYR 767
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPED 293
G+NY++P L P N LTKR+AL ++ Q E+ K +I +E++++ + + PE+
Sbjct: 768 GKNYQRPHALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPEE 821
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 116/217 (53%), Gaps = 16/217 (7%)
Query: 75 STSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLL 134
+ SK G + E +M + T+ R A ++K L + L+ A+KK+
Sbjct: 523 ANSKYGNKLDENYENKMTR----TVEAARHADLVRK--------LEWKLQLAQKKIEKAE 570
Query: 135 QKLKKYELPELPP-SVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
+ L K E P + PE T E+ ++K+G R K ++ +G RGVF G ++NMHLHW
Sbjct: 571 RVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHW 630
Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLI 250
K+ E V++ +K++A + SGGI++++ V I++FRG++Y +P L
Sbjct: 631 KYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYARPSKLR 690
Query: 251 PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P N L+KRKAL ++ Q E+ +I + ++++++
Sbjct: 691 PRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKL 727
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 140 YELPELPPSVHDP----------ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
+ELP +PP P EL PE +L+ + G R K+ + VG GV +V+
Sbjct: 151 WELP-MPPPEAGPRAARSKAWMAELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVER 209
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ W+ E V++ P ++ ++ R +GG+VI + ++ ++RG Y P
Sbjct: 210 IRDRWRNDEVVRIKVTGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVAYDIP 266
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 16/198 (8%)
Query: 102 IRRAKKIKKKLMTDEERLIYN---LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
I+RA I+ E RL+Y L+RA++ +A + + L ELP D E+ T E
Sbjct: 601 IKRAALIRDL----ELRLLYGKQKLRRAERDLAKVQKDLDPSELPT------DSEIITEE 650
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ Y+KIG ++ +G R V+ G ++NMHLHWK E V+V ++K +A +
Sbjct: 651 ERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISL 710
Query: 219 ARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKL 275
SGG+++++ II++RG+NY+ P L P N LT++KA ++ Q E+ K
Sbjct: 711 EAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 770
Query: 276 NIKKIEQQLRRMGTNPED 293
++ +E+++ + T +D
Sbjct: 771 HVADLEERIELLKTGQDD 788
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 13/175 (7%)
Query: 93 KESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDP 152
K+ + +R +K+++KL E +L+ +R KV + L+ ++ E DP
Sbjct: 555 KQEVEILRHENLVRKLERKLAFAERKLL-KAERGLAKVEVCLKPAEQRE---------DP 604
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E T E+ ++K+G + K ++ +G RGVF G V+NMHLHWK+ E V++ + +K
Sbjct: 605 ESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVK 664
Query: 213 EMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
++A + SGGI+++I V II++RG++Y++P L P N LTKRKAL ++
Sbjct: 665 KVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARS 719
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 17/199 (8%)
Query: 97 KTMREIR--RAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVH-DPE 153
K MRE+ R I +KL EE+L A++K+ + L K E+ P DPE
Sbjct: 576 KVMREVEQLRHANIVRKL---EEKL----SLAERKIRRAERALMKVEVSLKPSETRADPE 628
Query: 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVC--CDNFPKEKI 211
T E+ ++K+G R K ++ +G RGVF G ++NMHLHWK+ E V++ +NF E +
Sbjct: 629 SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKANNF--EHV 686
Query: 212 KEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQ 268
K++A + SGG+++++ V +I+++RG++Y++P L P N LTKRKAL ++ Q
Sbjct: 687 KKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMLRPKNLLTKRKALARSIELQ 746
Query: 269 ALESQKLNIKKIEQQLRRM 287
E+ +I ++ ++ ++
Sbjct: 747 RHEALSSHISTLQSKVEKL 765
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ K+ F K+ +G GV V +H WK E V++ + +
Sbjct: 208 ELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNM 267
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K M ++ + +GG+VI + ++ ++RG +Y+ P
Sbjct: 268 KRMHEILEKKTGGLVI-WRSGNSVSLYRGVSYKDP 301
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 118 RLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDP-ELFTPEQLQAYKKIGFRNKNYVPV 176
+L + L A+K++A + L K E P +P E T E+ ++K+G R K ++ +
Sbjct: 548 KLEWKLSLAEKRIAKAERVLGKVETALKPSEDTNPHETITEEERFMFRKLGLRMKAFLLL 607
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK--- 233
G RGVF G ++NMHLHWK+ E V++ ++K +A + SGGI++++ V
Sbjct: 608 GRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSKGY 667
Query: 234 TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
I++FRG++YR+P L P N L+KRKAL ++ Q +++ +I K+ +++ ++
Sbjct: 668 AIVVFRGKDYRRPSMLRPRNLLSKRKALARSIEIQRMQALNRHIGKLNRRVNQL 721
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 16/198 (8%)
Query: 102 IRRAKKIKKKLMTDEERLIYN---LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
I+RA I+ E RL+Y L+RA++ +A + + L ELP D E+ T E
Sbjct: 559 IKRAALIRDL----ELRLLYGKQKLRRAERDLAKVQKDLDPSELPT------DSEIITEE 608
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ Y+KIG ++ +G R V+ G ++NMHLHWK E V+V ++K +A +
Sbjct: 609 ERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISL 668
Query: 219 ARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKL 275
SGG+++++ II++RG+NY+ P L P N LT++KA ++ Q E+ K
Sbjct: 669 EAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 728
Query: 276 NIKKIEQQLRRMGTNPED 293
++ +E+++ + T +D
Sbjct: 729 HVADLEERIELLKTGQDD 746
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 5/155 (3%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
LL +L++ ++P+ P D E T E+ +K+G R K ++ +G RG+F G V+NMHLH
Sbjct: 586 LLAELEEAQIPQQPEI--DKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLH 643
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK+ E V++ + E I +A + SGGI++ + V IIM+RG+NY++P +L
Sbjct: 644 WKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASL 703
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
P L KR+AL ++ Q ES KL++ ++ + +
Sbjct: 704 RPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNI 738
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTPEQ-LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE+ L+ K IG + + + VG G+ G+V +H W+ E V++ C++ K +
Sbjct: 183 ELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNM 242
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+VI + II++RG NY+ P
Sbjct: 243 KRTHDILERKTGGLVI-WRSGSYIILYRGANYKYP 276
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 5/155 (3%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
LL +L++ ++P+ P D E T E+ +K+G R K ++ +G RG+F G V+NMHLH
Sbjct: 586 LLAELEEAQIPQQPEI--DKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLH 643
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK+ E V++ + E I +A + SGGI++ + V IIM+RG+NY++P +L
Sbjct: 644 WKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASL 703
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
P L KR+AL ++ Q ES KL++ ++ + +
Sbjct: 704 RPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNI 738
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTPEQ-LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE+ L+ K IG + + + VG G+ G+V +H W+ E V++ C++ K +
Sbjct: 183 ELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNM 242
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+VI + II++RG NY+ P
Sbjct: 243 KRTHDILERKTGGLVI-WRSGSYIILYRGANYKYP 276
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 114/203 (56%), Gaps = 14/203 (6%)
Query: 96 GKTMREIRRAKKIKKKLMTDEERLIYNLKR----AKKKVA---LLLQKLKKYELP-ELPP 147
G + + RR K+ ++ L+ N+ R AK KVA + L K++++ P ELP
Sbjct: 702 GDLINDGRRKKERNHLILAKHTSLLKNMTRKLILAKTKVAKAEMALAKVQEFLSPAELP- 760
Query: 148 SVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFP 207
D E T E+ +++IG + K ++ +G R VF G VQNMHLHWK E V++
Sbjct: 761 --TDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKIIVKGKS 818
Query: 208 KEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
++K +A + SGG++I++ +II++RG+NY++P+ L P N LT+R+A+ ++
Sbjct: 819 FAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRPQILKPRNLLTRRRAMARS 878
Query: 265 RFEQALESQKLNIKKIEQQLRRM 287
Q E+ +I + Q++ ++
Sbjct: 879 IELQRREALNHHISILRQKIWKL 901
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 102 bits (254), Expect = 6e-19, Method: Composition-based stats.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKE 213
+ T E+ +++IG R K Y+P+GVRGVF GV++NMHLHWK E V++ ++E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 214 MATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
A ++A SGGI++ I V +I +RG+NYR+P N+ P N LTK KAL +A
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRA 114
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 7/145 (4%)
Query: 125 RAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGG 184
R K+K L K++K P P D E T E+ +++G + K ++ +G RGV+ G
Sbjct: 410 RKKEKAEEALSKVEKLMKPREPSE--DRETITEEERYTLQRVGLKMKAFLLLGRRGVYSG 467
Query: 185 VVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV---KTIIMFRGR 241
+++NMHLHWK+ E V+V + I++ A MI SGGI+I I+ V + + +RG+
Sbjct: 468 IIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGK 527
Query: 242 NYRQPKNLIPFNTLTKRKALFKARF 266
NYR+P+ L P N LTKRKAL AR+
Sbjct: 528 NYRRPEELRPHNLLTKRKAL--ARY 550
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 146 PPSVHDPELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCD 204
PPS+ EL P+ +L+ + + K + V G+ VVQ +H W+ E V++ CD
Sbjct: 25 PPSLA--ELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCD 82
Query: 205 NFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP--KNLIPFNTLTKRK 259
++++ + + +GG+VI ++++RG++Y P + IP +++K K
Sbjct: 83 QEVAMNMRKVHEELEKRTGGLVIWRAGT-ALVIYRGKDYAGPPKERWIPTESVSKPK 138
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 16/198 (8%)
Query: 102 IRRAKKIKKKLMTDEERLIYN---LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158
I+RA I+ E RL+Y L+RA++ +A + + L ELP D E T E
Sbjct: 558 IKRAALIRDL----ELRLLYGKQKLRRAERDLAKVQKDLDPSELPT------DSETITEE 607
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ Y+KIG ++ +G R V+ G ++NMHLHWK E V+V ++K +A +
Sbjct: 608 ERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISL 667
Query: 219 ARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKL 275
SGG+++++ +II++RG+NY+ P L P N LT++KA ++ Q E+ K
Sbjct: 668 EAESGGVLVSVDKTMKGYSIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 727
Query: 276 NIKKIEQQLRRMGTNPED 293
++ +E+++ + T +D
Sbjct: 728 HVADLEERIELLKTGQDD 745
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 29/252 (11%)
Query: 43 SNMIRPTTHFCDDNRFSFTPLNYPFN---RWSRAMSTSKRGRSMRSKVERRMQKESGKTM 99
S ++ P+T + N S L + +W + + M+ +VE+ +
Sbjct: 570 SALVLPSTK-ANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEK---------V 619
Query: 100 REIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQ 159
R + +K+++KL E++L+ +A++ +A + + LK E D E T E+
Sbjct: 620 RSAKLVRKLERKLAFAEKKLL----KAERALAKVEESLKPAE------QRTDLEGITEEE 669
Query: 160 LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIA 219
++K+G + K ++ +G RGVF G V+NMHLHWK+ E +++ E +++A +
Sbjct: 670 RFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALE 729
Query: 220 RLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 276
SGGI++++ + +I++RG++Y++P L P N LTKRKAL ++ Q E+ +
Sbjct: 730 AESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKH 789
Query: 277 IKKIE---QQLR 285
I+ I+ +QLR
Sbjct: 790 IEAIQTRSEQLR 801
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 152 PELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
PE T E+ ++K+G R K ++ +G RGVF G ++NMHLHWK+ E V++ +
Sbjct: 1262 PETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADV 1321
Query: 212 KEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQ 268
K +A + SGGI++++ V I++FRG+NYR+P +L P N L+KRKAL ++ Q
Sbjct: 1322 KRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQ 1381
Query: 269 ALESQKLNIKKIEQQLRRM 287
++ + K+ +++ R+
Sbjct: 1382 RHQALSRHFAKLNRKVERL 1400
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 140 YELPELPP-----SVHDP----ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNM 189
+E P PP S P EL P +L+ + R K+ VG GV +V+ +
Sbjct: 825 WERPMPPPEAAPRSARSPTWMAELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKI 884
Query: 190 HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
WK E V+V P ++ ++ R +GG+VI + ++ ++RG +Y +P
Sbjct: 885 KEKWKTEEVVRVKVSGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVDYDEP 940
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 133/252 (52%), Gaps = 29/252 (11%)
Query: 43 SNMIRPTTHFCDDNRFSFTPLNYPFN---RWSRAMSTSKRGRSMRSKVERRMQKESGKTM 99
S ++ P+T + N S L + +W + + M+ +VE+ +
Sbjct: 581 SALVLPSTK-ANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEK---------V 630
Query: 100 REIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQ 159
R + +K+++KL E++L+ +A++ +A + + LK E D E T E+
Sbjct: 631 RSAKLVRKLERKLAFAEKKLL----KAERALAKVEESLKPAE------QRTDLEGITEEE 680
Query: 160 LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIA 219
++K+G + K ++ +G RGVF G V+NMHLHWK+ E +++ E +++A +
Sbjct: 681 RFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALE 740
Query: 220 RLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 276
SGGI++++ + +I++RG++Y++P L P N LTKRKAL ++ Q E+ +
Sbjct: 741 AESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREALIKH 800
Query: 277 IKKIE---QQLR 285
I+ I+ +QLR
Sbjct: 801 IEAIQTRSEQLR 812
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
+L L+ E P+L S D E T ++ +KIG + K ++ +G RGVF G ++NMHLH
Sbjct: 559 VLADLENRESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLH 616
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK+ E V++ C+ + E ++A ++ SGGI++ + V II++RG+NY +P+ L
Sbjct: 617 WKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCL 676
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P L+KR+AL ++ Q +S KL++ K+ + +
Sbjct: 677 RPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEEL 714
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
P +L+ + +G R + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ +GG+VI K I+++RG NY+ P
Sbjct: 226 HDVLETKTGGLVIWRSGSK-ILLYRGVNYQYP 256
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 99/165 (60%), Gaps = 9/165 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
LK+++K +A + + L+ ELP ++ D E F ++KIG K Y+ +G RGVF
Sbjct: 754 LKKSEKDLAKVQENLEPTELPTDLETISDEERFL------FRKIGLSMKPYLFLGRRGVF 807
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFR 239
G ++NMHLHWK+ E V++ + ++K +A + SGG+++++ II++R
Sbjct: 808 DGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVYR 867
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
G+NY +P+ + P N LT+R+AL ++ Q E+ K +I +++++
Sbjct: 868 GKNYMRPQAMRPENLLTRRQALARSVELQRYEALKHHITDLQERI 912
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 18/192 (9%)
Query: 109 KKKLMTDEE-------RLIYNLKRAKKKVALLLQKLK---KYELPELPPSVHDPELFTPE 158
++KLM+ E +L R K K L KL+ K + PE+ D E T E
Sbjct: 550 RRKLMSSETSMRKTSIKLSIVCIRKKAKAEEFLAKLEEEEKLQQPEI-----DKEGITVE 604
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+ KK+G R K ++ +G RGVF G V+NMHLHWK+ E V++ + + + ++A +
Sbjct: 605 ERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTL 664
Query: 219 ARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKL 275
SGGI++ + VK II+FRG+NY++P L P + L K++AL ++ Q +S KL
Sbjct: 665 EAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRPESLLNKKEALKRSIEAQRRKSLKL 724
Query: 276 NIKKIEQQLRRM 287
++ K+ Q + +
Sbjct: 725 HVLKLTQNVEEL 736
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
T E+L + IG R K + VG G+ G+V +H W+ E V++ C++ + +K
Sbjct: 184 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRT 243
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ R +GGIV+ K II++RG NY P
Sbjct: 244 HDLLERKTGGIVVWRSGSK-IILYRGPNYIYP 274
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
+L L+ E P+L S D E T ++ +KIG + K ++ +G RGVF G ++NMHLH
Sbjct: 568 VLADLENRESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLH 625
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK+ E V++ C+ + E ++A ++ SGGI++ + V II++RG+NY +P+ L
Sbjct: 626 WKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCL 685
Query: 250 IPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
P L+KR+AL ++ Q +S KL++ K+ + +
Sbjct: 686 RPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEEL 723
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
P +L+ + +G R + +G G+ G+V +H W+ E V++ C++ + +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ +GG+VI K I+++RG NY+ P
Sbjct: 226 HDVLETKTGGLVIWRSGSK-ILLYRGVNYQYP 256
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 105 AKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVH-DPELFTPEQLQAY 163
A+K K+ TD R NL K + A L +L K E P +V D E + + Y
Sbjct: 393 ARKRKRAQATDRIRSKLNLALKKMERAQL--ELNKVEAKTTPANVTLDKEHLSDGERYMY 450
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
+K+G + K ++ +G RGVF G V+NMHLHWK+ E V++ E + +A ++ SG
Sbjct: 451 RKLGLKMKAFLLLGRRGVFSGTVENMHLHWKYRELVKILVKTSLPEA-ERIAKILENESG 509
Query: 224 GIVINIHNV---KTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKI 280
GI+++I + I+M+RG+NY++P L P + LTKR+AL ++ Q +ES + +I+ +
Sbjct: 510 GILVDIITTSKGQAIVMYRGKNYQRPSELRPRHLLTKRQALKRSLEMQRMESLEKHIRVL 569
Query: 281 EQQLRRM 287
++++ M
Sbjct: 570 KKEIETM 576
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P+ +L+ + +G + + + +G GV G+V+ +H W+ E +V CD +
Sbjct: 30 ELTIPDFELKRLRTLGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNM 89
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K+ + RL+GG+VI + +++RG++Y P
Sbjct: 90 KKAHEDLERLTGGLVI-WRSGSAAVVYRGKDYVHP 123
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 96 GKTMREIRRAKKIKKKLMTDEERLIYNLKR----AKKKVA---LLLQKLKKYELP-ELPP 147
G ++ + +R +++K+ + L+ NLKR AK KVA L K++++ P ELP
Sbjct: 700 GMSLNDKQREEEMKRLSLLKHTSLLKNLKRKLILAKTKVAKAERALAKVQEFLSPAELP- 758
Query: 148 SVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFP 207
D E T E+ +++IG + + ++ +G R VF G VQNMHLHWK E V++
Sbjct: 759 --TDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIIVRGKS 816
Query: 208 KEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
++K +A + S G++I++ II +RG+NYR+P+ + P N LT+R+AL ++
Sbjct: 817 FAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRPQIMKPRNLLTRRQALARS 876
Query: 265 RFEQALESQKLNIKKIEQQLRRM 287
Q E+ K +I ++ ++ ++
Sbjct: 877 IELQRREALKHHISSLQGKIWKL 899
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 157 PE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
PE +L+ + R K + VG GV +V+++H WK E V++ + P +K
Sbjct: 354 PEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTH 413
Query: 216 TMIARLSGGIVINIHNVKTIIMFRGRNY 243
++ +GG+VI + ++++++RG NY
Sbjct: 414 DLLEDRTGGVVI-WRSGRSVVLYRGMNY 440
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
+K A+K +A L +K + +LP D E T E+ ++KIG K Y+ +G RGV+
Sbjct: 612 VKNAEKIIAKLQEKKEPSDLPT------DLETITDEERLLFRKIGLSMKPYLLLGRRGVY 665
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKT---IIMFR 239
G V+NMHLHWKF E V++ +++K +A + S G+VI++ +I++R
Sbjct: 666 DGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYR 725
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
G+NY +P + P N LT+R+AL ++ Q E+ K +I +E+++
Sbjct: 726 GKNYTRPDAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKI 770
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
E PE +L+ + I R + VGV+G+ ++ ++H WK E V++ + +
Sbjct: 218 EQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNM 277
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K + +GG+VI + I+++RG Y P
Sbjct: 278 KRAHEKLENRTGGLVI-WRSGSLIVLYRGMTYHLP 311
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 13/180 (7%)
Query: 134 LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
L++ +K + PE+ D E T E+ KK+G R K ++ +G RGVF G V+NMHLHW
Sbjct: 564 LEEEEKLQQPEI-----DKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHW 618
Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLI 250
K+ E V++ + + + ++A + SGGI++ + VK II+FRG+NY++P L
Sbjct: 619 KYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLR 678
Query: 251 PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPED---PVAMASIQRVASTF 307
P + L K++AL ++ Q +S KL++ K+ Q + + ++ + M SI+ STF
Sbjct: 679 PESLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEELKLKLDEDKRAIGMESIK--TSTF 736
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
T E+L + IG R K + VG G+ G+V +H +W+ E V++ C++ + +K
Sbjct: 164 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRT 223
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ R +GGIV+ K II++RG NY P
Sbjct: 224 HDLLERKTGGIVVWRSGSK-IILYRGPNYIYP 254
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 118 RLIYNLKRAKKKVALLLQKLKKYELPELPP-SVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
+L + L+ A+KK+ + L K E P + PE T E+ ++K+G R K ++ +
Sbjct: 400 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 459
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK--- 233
G RGVF G ++NMHLHWK+ E V++ +K++A + SGGI++++ V
Sbjct: 460 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 519
Query: 234 TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
I++FRG++Y +P L P N L+KRKAL ++
Sbjct: 520 AIVVFRGKDYARPSKLRPRNLLSKRKALARS 550
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE +L+ + G R K+ + VG GV +V+ + W+ E V++ P +
Sbjct: 19 ELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNM 78
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ ++ R +GG+VI + ++ ++RG Y P
Sbjct: 79 RLFHEILERKTGGLVI-WRSGTSVSLYRGVAYDIP 112
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 104 RAKKIKKKLMTDEERLIYNLKR----AKKKVALL---LQKLKKYELP-ELPPSVHDPELF 155
R K+ ++T L+ NLKR AK KV L K++++ P ELP D E
Sbjct: 695 RKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELP---TDLETV 751
Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
T E+ ++IG + K ++ +G R VF G VQNMHLHWK E V+V ++K +A
Sbjct: 752 TDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIA 811
Query: 216 TMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALES 272
+ SGG++I++ II++RG+NY+ P+ L P N L++RKAL AR +
Sbjct: 812 ISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKAL--ARSIELQRR 869
Query: 273 QKLN---------IKKIEQQLRRMGTNPEDPVA 296
+ LN I K++ QL RM E P A
Sbjct: 870 EGLNHHISNLRDKIWKLKSQLVRMQVAGEKPDA 902
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+L+ + + R K + VG GV +V+++H W+ E V++ + P +K ++
Sbjct: 345 ELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDIL 404
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNY 243
+GGIVI + ++++++RG NY
Sbjct: 405 EERTGGIVI-WRSGRSVVLYRGMNY 428
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
L++A+K +A + + L LP ++ D E F ++KIG K Y+ +G RGV+
Sbjct: 716 LRKAEKALAKVHEHLDPSGLPTDLETISDEERFL------FRKIGLSMKPYLFLGKRGVY 769
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFR 239
G ++NMHLHWK+ E V+V ++K +A + SGG++++I II++R
Sbjct: 770 DGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVYR 829
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPED 293
G+NY P+ + P N LTKR+AL ++ Q E+ K +I +++++ + ED
Sbjct: 830 GKNYLHPEVMRPKNLLTKRQALVRSIELQRREALKHHISDLQERIELLKLELED 883
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
+K A+K +A L +K + +LP D E T E+ ++KIG K Y+ +G RGV+
Sbjct: 669 VKNAEKIIAKLQEKKEPSDLPT------DLETITDEERLLFRKIGLSMKPYLLLGRRGVY 722
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKT---IIMFR 239
G V+NMHLHWKF E V++ +++K +A + S G+VI++ +I++R
Sbjct: 723 DGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYR 782
Query: 240 GRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
G+NY +P + P N LT+R+AL ++ Q E+ K +I +E+++
Sbjct: 783 GKNYTRPDAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKI 827
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
E PE +L+ + I R + VGV+G+ ++ ++H WK E V++ + +
Sbjct: 275 EQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNM 334
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K + +GG+VI + I+++RG Y P
Sbjct: 335 KRAHEKLENRTGGLVI-WRSGSLIVLYRGMTYHLP 368
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 14/203 (6%)
Query: 96 GKTMREIRRAKKIKKKLMTDEERLIYNLKR----AKKKVALL---LQKLKKYELP-ELPP 147
GK++ + +R +++K + L+ NLKR AK KVA L K++++ P ELP
Sbjct: 704 GKSVNDKQREEEMKHLSLLKHTSLLKNLKRKLILAKTKVAKAEKALAKVQEFLTPAELP- 762
Query: 148 SVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFP 207
D E T E+ +++IG + + ++ +G R VF G VQNMHLHWK E V++
Sbjct: 763 --TDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVVRGKS 820
Query: 208 KEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
+ K +A + S G++I++ II +RG+NYR+P+ + P N LT+R+AL ++
Sbjct: 821 FAQAKHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRPQIMKPRNLLTRRQALARS 880
Query: 265 RFEQALESQKLNIKKIEQQLRRM 287
Q E+ K +I ++ ++ ++
Sbjct: 881 IELQRREALKHHISSLQGKISKL 903
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 148 SVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFP 207
S+ +PEL + + R K + VG GV +V+++H WK E V++ + P
Sbjct: 356 SIPEPEL------RRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPP 409
Query: 208 KEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNY 243
+K ++ +GG+VI + ++++++RG NY
Sbjct: 410 SLNMKRTHDLLEDRTGGVVI-WRSGRSVVLYRGMNY 444
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 104 RAKKIKKKLMTDEERLIYNLKR----AKKKVALL---LQKLKKYELP-ELPPSVHDPELF 155
R K+ ++T L+ NLKR AK KV L K++++ P ELP D E
Sbjct: 640 RKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELP---TDLETV 696
Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
T E+ ++IG + K ++ +G R VF G VQNMHLHWK E V+V ++K +A
Sbjct: 697 TDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIA 756
Query: 216 TMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALES 272
+ SGG++I++ II++RG+NY+ P+ L P N L++RKAL AR +
Sbjct: 757 ISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKAL--ARSIELQRR 814
Query: 273 QKLN---------IKKIEQQLRRMGTNPEDPVA 296
+ LN I K++ QL RM E P A
Sbjct: 815 EGLNHHISNLRDKIWKLKSQLVRMQVAGEKPDA 847
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMI 218
+L+ + + R K + VG GV +V+++H W+ E V++ + P +K ++
Sbjct: 344 ELRRLRDVALRMKERMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDIL 403
Query: 219 ARLSGGIVINIHNVKTIIMFRGRNY 243
+GGIVI + ++++++RG NY
Sbjct: 404 EERTGGIVI-WRSGRSVVLYRGMNY 427
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
K K LL +++ E+ + P D E T E+ +K+G + K ++ +G RGVF G +
Sbjct: 553 KAKAVKLLAEIENSEMSQQPEI--DKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTI 610
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNY 243
+NMHLHWK+ E V++ C + E+A + SGGI++ + V I+++RG+NY
Sbjct: 611 ENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNY 670
Query: 244 RQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
++P L P L+KR+A+ ++ Q ES KL++ ++ + +
Sbjct: 671 QRPALLRPPTLLSKREAMKRSLEAQRRESLKLHVLRLTRNI 711
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
+ E+L+ ++IG K + VG G+ G+V +H W+ E V++ C++ + +K
Sbjct: 158 LSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRT 217
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ R +GG+V+ K I+++RG NY P
Sbjct: 218 HDLLERKTGGLVVWRAGSK-IVLYRGVNYIYP 248
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 69 RWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKK 128
RW +A+ + MR + +R +K+++KL E +L+ +R
Sbjct: 591 RWGKALDDKHKENVMRE----------AEQLRHTDLVRKLERKLAFAERKLV-KAERTLA 639
Query: 129 KVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQN 188
KV + K+ +P+ T E+ ++K+G R K ++ +G R VF G V+N
Sbjct: 640 KVEAFMTPAKRQA---------EPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVEN 690
Query: 189 MHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQ 245
MHLHWK+ E V++ + +K +A + SGG++++I V II++RG++Y++
Sbjct: 691 MHLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKR 750
Query: 246 PKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPE 292
P L P N LTKRKAL ++ Q E+ +I ++ ++ ++ + E
Sbjct: 751 PSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSKVGKLNSEIE 797
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 153 ELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
+L PE +L+ + + F+ ++ + +G GV VV +H WK E V++ P +
Sbjct: 234 QLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNM 293
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K M ++ R +GG+VI + ++ ++RG +Y P
Sbjct: 294 KRMHEILERKTGGLVI-WRSGTSLSLYRGVSYELP 327
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 8/146 (5%)
Query: 125 RAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPV-GVRGVFG 183
R K+K L K++K P P D E T E+ +++G + K ++ + G RGV+
Sbjct: 407 RKKEKAEEALSKVEKLMKPREPSE--DRETITEEERYTLQRVGLKMKAFLLLAGRRGVYS 464
Query: 184 GVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV---KTIIMFRG 240
G+++NMHLHWK+ E V+V + I++ A MI SGGI+I I+ V + + +RG
Sbjct: 465 GIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRG 524
Query: 241 RNYRQPKNLIPFNTLTKRKALFKARF 266
+NYR+P+ L P N LTKRKAL AR+
Sbjct: 525 KNYRRPEELRPHNLLTKRKAL--ARY 548
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 146 PPSVHDPELFTPE-QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCD 204
PPS+ EL P+ +L+ + + K + V G+ VVQ +H W+ E V++ CD
Sbjct: 26 PPSLA--ELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCD 83
Query: 205 NFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP--KNLIPFNTLTKRK 259
++++ + + +GG+VI ++++RG++Y P + IP +++K K
Sbjct: 84 QEVAMNMRKVHEELEKRTGGLVIWRAGA-ALVIYRGKDYAGPPKERWIPTESVSKPK 139
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 110/201 (54%), Gaps = 12/201 (5%)
Query: 97 KTMREIRRAKKIKKKLMTDE----ERLIYNLKRA---KKKVALLLQKLKKYELPELPPSV 149
K M I+ + I+K L+ +R + L +A K+K LL+ L+K E L
Sbjct: 494 KHMTFIKDKETIEKPLLMKAKAAIQRTSFKLAQALEKKEKAEKLLESLEKDE--SLQEEE 551
Query: 150 HDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKE 209
D E T E+ ++IG + K ++ +G RGVF G V+NMHLHWK+ E V++ C+ E
Sbjct: 552 IDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQESVE 611
Query: 210 KIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARF 266
+ A + SGGI++ + V II++RG+NY +P +L P L K++AL ++
Sbjct: 612 YAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSRPDSLRPRTLLNKKQALKRSIE 671
Query: 267 EQALESQKLNIKKIEQQLRRM 287
Q E+ KL++ K+++ + +
Sbjct: 672 AQRREALKLHVLKLDKNINEL 692
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEM 214
T ++ +++G++ K + VG GV G+V +H W+ E V+V C++ + +K
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 215 ATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
++ R +GG+V+ K II++RG +Y+ P
Sbjct: 211 HDILERKTGGLVVWRSGSK-IILYRGIDYKYP 241
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 106 KKIKKKLMTDEERLIYNLKRAKKKVAL----------LLQKLKKYELPELPPSVHDPELF 155
K K++++T E I KR K+++ LL+KL E P+ D E
Sbjct: 509 KDTKQRMLTKAEEAI---KRTSIKLSMALEKKAKAEKLLEKLINAESPQ--EQEIDKEGI 563
Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
+ E+ ++IG K ++ +G RGVF G V+NMHLHWK+ E V++ C N E++ ++A
Sbjct: 564 SKEEKYMLRRIGLMMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIIC-NGSLEEVHQIA 622
Query: 216 TMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALES 272
+ SGGI++ + V+ II++RG+NY P L P L KR+AL ++ Q ES
Sbjct: 623 LTLEAESGGILVAVERVRKGFAIIVYRGKNYSVPVCLRPQTLLNKRQALKRSIEAQRRES 682
Query: 273 QKLNIKKIEQQLRRM 287
KL I +++++ +
Sbjct: 683 LKLRILTLDKEINEL 697
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 144 ELPPSVHDPELFTPE-QLQAYKKIGFRN-KNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
EL P++ EL P+ +++ +GF K V + G+ +V +H WK E V+V
Sbjct: 138 ELVPTLA--ELSLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQIVDVIHERWKRSEVVRV 195
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C+ ++ ++ ++ R +GG+V+ K II++RG +Y+ P
Sbjct: 196 FCEELSRDDMRRTHDLLERKTGGLVVWRSGTK-IILYRGADYKYP 239
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 84/139 (60%), Gaps = 4/139 (2%)
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCD-NFPKEKI 211
E T E+ ++IG + ++ +G RGVF G V+NMHLHWK+ E V++ C+ E +
Sbjct: 541 EGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDV 600
Query: 212 KEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQ 268
+++A + SGGI+I + V II++RG+NY +P +L P L K++AL ++ Q
Sbjct: 601 QQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQ 660
Query: 269 ALESQKLNIKKIEQQLRRM 287
ES KL++ K+++ + +
Sbjct: 661 RCESLKLHVLKLDRNINEL 679
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 167 GFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIV 226
G + + VG G+ G+V +H W+ E V++ C++ + +K ++ R +GG+V
Sbjct: 142 GLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLV 201
Query: 227 INIHNVKTIIMFRGRNYRQP 246
+ K II++RG +Y+ P
Sbjct: 202 VWRSGSK-IILYRGTDYKYP 220
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
Query: 133 LLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 192
LL +L++ ++P+ P D E T E+ +K+G R K ++ +G RG+F G V+NMHLH
Sbjct: 961 LLAELEEAQIPQQPEI--DKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLH 1018
Query: 193 WKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNL 249
WK+ E V++ + E I +A + SGGI++ + V IIM+RG+NY++P +L
Sbjct: 1019 WKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASL 1078
Query: 250 IPFNTLTKRKALFKARFEQALESQK 274
P L KR+A+ +++LE+Q+
Sbjct: 1079 RPQTLLNKREAM-----KRSLEAQR 1098
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 153 ELFTPEQ-LQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL PE+ L+ K IG + + + VG G+ G+V +H W+ E V++ C++ K +
Sbjct: 375 ELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNM 434
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL 249
K ++ R +GG+VI + II++RG NY+ P L
Sbjct: 435 KRTHDILERKTGGLVI-WRSGSYIILYRGANYKYPYFL 471
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
+K+G + K ++ +G RGVF G ++NMHLHWK+ E V++ C E ++ A + SG
Sbjct: 540 RKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESG 599
Query: 224 GIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKI 280
GI++ + V II++RG+NY++P L P L+KR AL ++ Q +S K+++ K+
Sbjct: 600 GILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLKL 659
Query: 281 EQQL 284
+ +
Sbjct: 660 SKNI 663
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 143 PELPPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P PPS EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++
Sbjct: 35 PSAPPSA--AELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKL 92
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C++ ++ ++ R +GG+VI + TII++RG NY P
Sbjct: 93 RCEDVWAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 136
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Query: 127 KKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVV 186
K+K LL++L+K P E + E+ +KIG + K ++ +G RGVF G +
Sbjct: 611 KEKAEKLLEELEKASQPS---KAETREHISDEERYMLRKIGLQMKPFLLLGRRGVFDGTI 667
Query: 187 QNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNY 243
+NMHLHWK+ E V++ C + ++ A + SGGI++ + V IIM+RG+NY
Sbjct: 668 ENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKGHAIIMYRGKNY 727
Query: 244 RQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQL 284
+P L P + L KR AL ++ Q +S KL++ + + +
Sbjct: 728 HRPSTLRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNI 768
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 146 PPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCD 204
PPS EL P ++L+ + +G R + + VG GV G+V +H W+ E V++ CD
Sbjct: 132 PPSA--AELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCD 189
Query: 205 NFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ ++ ++ R +GG+VI + TII++RG NY+ P
Sbjct: 190 DVSAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 230
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 163 YKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLS 222
+K+G + K ++ +G RGVF G ++NMHLHWK+ E V++ C E ++ A + S
Sbjct: 636 LRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAES 695
Query: 223 GGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKK 279
GGI++ + V II++RG+NY++P L P L+KR AL ++ Q +S K+++ K
Sbjct: 696 GGILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVHVLK 755
Query: 280 IEQQL 284
+ + +
Sbjct: 756 LSKNI 760
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 143 PELPPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P PPS EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++
Sbjct: 132 PSAPPSAA--ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKL 189
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C++ ++ ++ R +GG+VI + TII++RG NY P
Sbjct: 190 RCEDVWAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 233
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 103 RRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDP--ELFTPEQL 160
R K++KK +ER ++ LKR ++ A +L KL P+ HD E+ T E+
Sbjct: 590 RLEKELKK-----QERNLFILKRKIERSAKVLAKLNS----AWRPADHDADKEMITEEER 640
Query: 161 QAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIAR 220
+ ++KIG + + + +G RGVF GV++ +H HWK E V+V ++ A ++
Sbjct: 641 ECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLES 700
Query: 221 LSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKAL--------------FK 263
SGG++++I +K II++RG+NYR+P L+P N LTKR+AL F
Sbjct: 701 ESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFA 760
Query: 264 ARFEQALESQKLNIKKIEQQLRRM 287
+ +QA+ KL + +++ RR+
Sbjct: 761 YQRQQAISDLKLKLADLQKGSRRI 784
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 106/194 (54%), Gaps = 23/194 (11%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDP--ELFTPEQLQAYKKIGFRN 170
+ +ER ++ LKR ++ A +L KL P+ HD E+ T E+ + ++KIG +
Sbjct: 296 LKKQERNLFILKRKIERSAKVLAKLNS----AWRPADHDADKEMITEEERECFRKIGQKM 351
Query: 171 KNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIH 230
+ + +G RGVF GV++ +H HWK E V+V ++ A ++ SGG++++I
Sbjct: 352 DSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSID 411
Query: 231 NVK---TIIMFRGRNYRQPKNLIPFNTLTKRKAL--------------FKARFEQALESQ 273
+K II++RG+NYR+P L+P N LTKR+AL F + +QA+
Sbjct: 412 KLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDL 471
Query: 274 KLNIKKIEQQLRRM 287
KL + +++ RR+
Sbjct: 472 KLKLADLQKGSRRI 485
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
+K+G + K ++ +G RGVF G ++NMHLHWK+ E V++ C E ++ A + SG
Sbjct: 642 RKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESG 701
Query: 224 GIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKI 280
GI++ + V II++RG+NY++P L P L+KR AL ++ Q +S K+++ K+
Sbjct: 702 GILVAVEKVSKGHAIIVYRGKNYQRPSKLRPKTLLSKRDALKRSVENQRCKSLKVHVLKL 761
Query: 281 EQQL 284
+ +
Sbjct: 762 SKNI 765
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++ C++ +
Sbjct: 142 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 201
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ ++ R +GG+VI + TII++RG NY+ P
Sbjct: 202 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 235
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 97 KTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFT 156
+ +++++ +K + + E L LK+ +++ L + L++Y+ PE P VHDPE +
Sbjct: 43 RKLQDLQVGRKFLSEDVATAENLREMLKKTYERIELKKKILQEYDFPEDKP-VHDPEYLS 101
Query: 157 PEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMAT 216
PE + A K+ +++ +G RGV+ G +++++ HW HET+++ C+ +P K++ MA
Sbjct: 102 PEFMTALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAE 161
Query: 217 MIARLSGGIVINI-HNVKTIIMFRGRNY 243
+AR+SG +VI + + I++RGRN+
Sbjct: 162 KVARMSGAVVIAVTEETMSFILYRGRNF 189
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
+++ E+ P E+ + E+ +K+G + K+++ +G RGVF G V+NMHLHWK+
Sbjct: 368 IEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYR 427
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFN 253
E V++ C + ++ A + SGGI++ + V II++RG+NY++P L P +
Sbjct: 428 ELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKS 487
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQL 284
L K+ AL ++ Q +S KL++ + + +
Sbjct: 488 LLNKKDALKRSVEYQRYKSLKLHVLNLSKNI 518
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
+++ E+ P E+ + E+ +K+G + K+++ +G RGVF G V+NMHLHWK+
Sbjct: 368 IEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYR 427
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFN 253
E V++ C + ++ A + SGGI++ + V II++RG+NY++P L P +
Sbjct: 428 ELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKS 487
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQL 284
L K+ AL ++ Q +S KL++ + + +
Sbjct: 488 LLNKKDALKRSVEYQRYKSLKLHVLNLSKNI 518
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
+++ E+ P E+ + E+ +K+G + K+++ +G RGVF G V+NMHLHWK+
Sbjct: 562 IEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYR 621
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFN 253
E V++ C + ++ A + SGGI++ + V II++RG+NY++P L P +
Sbjct: 622 ELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKS 681
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQL 284
L K+ AL ++ Q +S KL++ + + +
Sbjct: 682 LLNKKDALKRSVEYQRYKSLKLHVLNLSKNI 712
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P ++L+ + G R +N + VG GV G+V +H W+ E V++ CD+ +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+VI + TII++RG +Y+ P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E+ + E+ +K+G + K ++ +G RGVF G ++NMHLHWK+ E V++ C E +
Sbjct: 648 EVISEEERYMLRKVGLQMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVT 707
Query: 213 EMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQA 269
A + SGGI++ + V IIM+RG+NY++P +L P + L K+ AL ++ Q
Sbjct: 708 YAARTLEAESGGILVAVERVSKGHAIIMYRGKNYQRPSSLRPKSLLNKKDALKRSVELQR 767
Query: 270 LESQKLNIKKIEQQL 284
+S KL++ + + +
Sbjct: 768 RKSLKLHVLNLSKNI 782
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P ++L+ + +G R + + VG GV G+V +H W+ E V++ CD+ +
Sbjct: 139 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNM 198
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
+ ++ R +GG+VI + TII++RG NY+ P
Sbjct: 199 RRTHEVLERKTGGLVI-WRSGSTIILYRGTNYKYP 232
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
+++ E+ P E+ + E+ +K+G + K+++ +G RGVF G V+NMHLHWK+
Sbjct: 598 IEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYR 657
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFN 253
E V++ C + ++ A + SGGI++ + V II++RG+NY++P L P +
Sbjct: 658 ELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKS 717
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQL 284
L K+ AL ++ Q +S KL++ + + +
Sbjct: 718 LLNKKDALKRSVEYQRYKSLKLHVLNLSKNI 748
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P ++L+ + G R +N + VG GV G+V +H W+ E V++ CD+ +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+VI + TII++RG +Y+ P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 137 LKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFH 196
+++ E+ P E+ + E+ +K+G + K+++ +G RGVF G V+NMHLHWK+
Sbjct: 562 IEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVENMHLHWKYR 621
Query: 197 ETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFN 253
E V++ C + ++ A + SGGI++ + V II++RG+NY++P L P +
Sbjct: 622 ELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQRPSTLRPKS 681
Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQL 284
L K+ AL ++ Q +S KL++ + + +
Sbjct: 682 LLNKKDALKRSVEYQRYKSLKLHVLNLSKNI 712
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 153 ELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKI 211
EL P ++L+ + G R +N + VG GV G+V +H W+ E V++ CD+ +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 212 KEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
K ++ R +GG+VI + TII++RG +Y+ P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
++A+K +A + + L ++P D E T E+ ++KIG K Y+ +G R V+
Sbjct: 591 FRKAEKALAKVQRDLDPADIPS------DLETLTNEERFLFRKIGLSMKPYLLLGRRDVY 644
Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINI----HNVKTIIMF 238
G ++NMHLHWK+ E V++ ++K ++ + SGG+++++ TII++
Sbjct: 645 AGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVY 704
Query: 239 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPED 293
RG+NY P+ + P N LT+R+AL ++ Q E+ K +I +E+++ + + ED
Sbjct: 705 RGKNYFSPRVVRPKNLLTRRQALARSVELQRREALKHHISDLEERIGLLKSELED 759
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Query: 164 KKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSG 223
+K+G + K ++ +G RGVF G ++NMHLHWK+ E V++ C E ++ A + SG
Sbjct: 630 RKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESG 689
Query: 224 GIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNI 277
GI++ + V II++RG+NY++P L P L+KR AL +++LE+Q+ +
Sbjct: 690 GILVAVEKVSKGHAIIVYRGKNYKRPSKLRPKTLLSKRDAL-----KRSLENQRCKV 741
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 143 PELPPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P PPS EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++
Sbjct: 125 PSAPPSAA--ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKL 182
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C++ ++ ++ R +GG+VI + TII++RG NY P
Sbjct: 183 RCEDVWAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 226
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ + ++KIG + +V +G RGVF GV++ +H HWK E V+V +
Sbjct: 351 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQ 410
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + M+ +GG +I I T II++RG+NYR+P P N LTKR+AL
Sbjct: 411 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREAL 464
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ + ++KIG + +V +G RGVF GV++ +H HWK E V+V +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + M+ +GG +I I T II++RG+NYR+P P N LTKR+AL
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREAL 675
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ + ++KIG + +V +G RGVF GV++ +H HWK E V+V +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + M+ +GG +I I T II++RG+NYR+P P N LTKR+AL
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREAL 675
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 20/204 (9%)
Query: 87 VERRMQKESGKTMREIRRAKKIKKKLMTDEERL-IYNLK--RAKKKVALLLQKLKKYELP 143
E R+Q E+ K KI + L E RL I N K ++ K++ L ++ E P
Sbjct: 556 TESRLQAEAEKX--------KIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVE-P 606
Query: 144 ELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCC 203
+ D EL T E+ ++K+G + + + +G RGVF GV++ +H HWK E V+V
Sbjct: 607 D-----ADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVIT 661
Query: 204 DNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKA 260
++ A ++ SGGI++++ +K II+FRG+NY++P + + N LTKRKA
Sbjct: 662 MQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKA 721
Query: 261 LFKARFEQALESQKLNIKKIEQQL 284
L ++ Q + S K + +Q++
Sbjct: 722 LSRSLEMQRIGSLKFFANQRQQKI 745
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ ++K+G + + + +G RGVF GV++ +H HWK E V+V +
Sbjct: 609 DQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQ 668
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 267
+ A ++ SGGI++++ +K II+FRG+NY++P + + N LTKRKAL ++
Sbjct: 669 VNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEM 728
Query: 268 QALESQKLNIKKIEQQL 284
Q + S K + +Q++
Sbjct: 729 QRIGSLKFFANQRQQKI 745
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 17/179 (9%)
Query: 109 KKKLMTDEERLIYNLKRAKKKVALLLQKLKKY--ELPEL----PPSVHDP--ELFTPEQL 160
K +L ++E+L L+ + K+ +L K++K EL +L P+ D E+ T E+
Sbjct: 540 KLQLEAEKEKLERELRIQEHKLLILKSKIEKSARELSKLNSAWAPADQDADLEMMTEEER 599
Query: 161 QAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIAR 220
+ +KIG + ++ + +G RGVF GV++ +H HWK E V+V ++ A +
Sbjct: 600 ECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVIRTAKFLEA 659
Query: 221 LSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLN 276
+GGI+++I +K II++RG+NYR+P+ L+ N LTKRKAL + +LE Q++
Sbjct: 660 ETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLN-NLLTKRKALCR-----SLEMQRIG 712
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 6/171 (3%)
Query: 107 KIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKI 166
K++++L E RL LK +K A L KL +P P D + T E+ + ++KI
Sbjct: 483 KLERELRNQEYRLRI-LKSKIEKPAKDLSKLNSAWVPS--PRDADQGIMTEEERECFRKI 539
Query: 167 GFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIV 226
G + + + +G RGVF GV++ +H HWK E V+V ++ AT++ S GI+
Sbjct: 540 GLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGIL 599
Query: 227 INIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQK 274
+++ +K II++RG+NY++P L+ N LTKR+AL ++ Q + S K
Sbjct: 600 VSVDKLKEGHAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRVGSLK 650
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 97 KTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFT 156
K M E+ K +K + D+ER ++ L + ++ L KL P D EL T
Sbjct: 524 KAMIELEAEKHRLEKELKDQERRLFILTKKIERSNQALAKLHSSWNPS--EQSADKELLT 581
Query: 157 PEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMAT 216
E+ ++KIG + +V +G RGVF GV++ +H HWK E V+V +I +
Sbjct: 582 EEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQITYTSM 641
Query: 217 MIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKAL 261
++ +GG++I + II++RG+NYR+P+ P N LTKR+AL
Sbjct: 642 LLEVETGGVLIATQKLPHSHAIILYRGKNYRRPEK-SPSNLLTKREAL 688
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ + ++KIG + ++ + +G RG+F GV++ +H HWK E V+V +
Sbjct: 553 DLEIMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQ 612
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 267
+ A ++ SGGI++++ +K II++RG+NY++P + N LTKR+AL ++
Sbjct: 613 VINTAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKLAKNLLTKREALRRSLEM 672
Query: 268 QALESQKLNIKKIEQQLRRM 287
Q + S K + EQ + +
Sbjct: 673 QRIGSMKFFAHQREQAISEL 692
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 101/181 (55%), Gaps = 21/181 (11%)
Query: 116 EERLIYNLKRAKKKVALLLQKL-KKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYV 174
EERL + R KK V L KL + +L + PP+ E + E+ + K+G R + +
Sbjct: 111 EERLSL-VARKKKYVEKELAKLDGQMKLADAPPA---KEQISDEERYMFMKLGLRMRARL 166
Query: 175 PVGV-----RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINI 229
+G RGVF GVV+NMHLHWK E V+V P + ++ A ++ SGG+++ I
Sbjct: 167 LMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKG-PIFEAEQTAKILEMESGGVLVGI 225
Query: 230 HNV---KTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRR 286
+ II +RG+NY++P L P + L+KR+A +E++LE Q+ + +EQ + +
Sbjct: 226 VTTTKGQAIIFYRGKNYQRPSELRPRHLLSKRQA-----YERSLEMQR--KRSLEQHMLK 278
Query: 287 M 287
+
Sbjct: 279 L 279
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ ++KIG + +V +G RG+F GV++ +H HWK E V+V +
Sbjct: 575 DKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQ 634
Query: 211 IKEMATMIARLSGGIVI---NIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + ++ +GG++I + N II++RG+NY +P P N LTKR+AL
Sbjct: 635 ITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNLLTKREAL 688
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ +++IG + V +G RG+F GV++ +H HWK E V+V +
Sbjct: 573 DRELLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQ 632
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I A ++ +GGI+I + + T II++RG+NYR+P N LTKR+AL
Sbjct: 633 IMYTANLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREAL 686
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ ++KIG + +V +G RG+F GV++ +H HWK E V+V +
Sbjct: 575 DKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQ 634
Query: 211 IKEMATMIARLSGGIVI---NIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + ++ +GG++I + N II++RG+NY +P P N TKR+AL
Sbjct: 635 ITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNYHRPTKSSPSNLRTKREAL 688
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E T E+ +++IG + V +G RG+F GV++ +H HWK E V+V +
Sbjct: 560 DREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I A+++ +GGI+I + + T II++RG+NYR+P N LTKR+AL
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREAL 673
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 10/185 (5%)
Query: 80 GRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKK 139
GR + ++ +M KE+ + +R KKI++K E RA+K LL K+
Sbjct: 457 GREISTEECEKMMKEAAEAT-NVRLMKKIERKPAVIHEHTDTKKSRAEK----LLAKIDS 511
Query: 140 YELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETV 199
+P P + E T E+ ++ +G R K Y+ + GVF V++NMHLHW+ E V
Sbjct: 512 SMVPVGPDNRR--ETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELV 569
Query: 200 QVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLT 256
++ ++E A+++ SGGI++ I + ++I +RG++Y++P L N LT
Sbjct: 570 KLITKQKSLAFVEETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPITLRHRNLLT 629
Query: 257 KRKAL 261
K KAL
Sbjct: 630 KTKAL 634
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E T E+ +++IG + V +G RG+F GV++ +H HWK E V+V +
Sbjct: 560 DREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I A+++ +GGI+I + + T II++RG+NYR+P N LTKR+AL
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREAL 673
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ + ++IG + + + +G RGVF GV++ +H HWK E +V +
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
+ A + S G++I+I +K I+++RG+NY++P + L+ N LTKRKAL ++
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687
Query: 267 EQALESQKL 275
Q L S K
Sbjct: 688 MQRLGSLKF 696
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ + ++IG + + + +G RGVF GV++ +H HWK E +V +
Sbjct: 566 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 625
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
+ A + S G++I+I +K I+++RG+NY++P + L+ N LTKRKAL ++
Sbjct: 626 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 685
Query: 267 EQALESQKL 275
Q L S K
Sbjct: 686 MQRLGSLKF 694
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 17/128 (13%)
Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK--- 233
G RGVF GV++ +H HWK E V+V ++ A ++ SGG++++I +K
Sbjct: 119 GRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGH 178
Query: 234 TIIMFRGRNYRQPKNLIPFNTLTKRKAL--------------FKARFEQALESQKLNIKK 279
II++RG+NYR+P L+P N LTKR+AL F + +QA+ KL +
Sbjct: 179 AIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLKLAD 238
Query: 280 IEQQLRRM 287
+++ RR+
Sbjct: 239 LQKGSRRI 246
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 21/202 (10%)
Query: 71 SRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKV 130
S +M ++ + RS+ + M + S ++R K+++ KL I +RA ++
Sbjct: 528 SESMEMRRQWEAQRSEKDDEMDRNSAVVALKVREQKRLEAKLAA----AISKKRRADLQI 583
Query: 131 ALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMH 190
L + L E P D E T E+ +KK+G R ++ +G RGVF GV++NMH
Sbjct: 584 VKLERSLLLSEHP------RDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMH 637
Query: 191 LHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVI------NIHNVKTIIMFRGRNYR 244
LHWK E V++ K E+A M+ SGGI++ +I ++ +IM ++Y
Sbjct: 638 LHWKHRELVKLILKEKDKAIALEVAKMLEIESGGILVGVALQLHIEKLEELIMKLRKDY- 696
Query: 245 QPKNLIPFNTL--TKRKALFKA 264
L+ N L T AL+KA
Sbjct: 697 --DYLLKSNALPDTPHSALYKA 716
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 18/123 (14%)
Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF-----PKEK 210
T E++ +KIG R K Y+ +G R VF GV++NMHLHWK+ + V++ ++
Sbjct: 346 TEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQLVKIIVKKSYFMYRERDD 405
Query: 211 IKEMATMIARLSGGIVINIHNV---KTIIMFRGRNYRQPKNLI----------PFNTLTK 257
I+ +A M+ SGG+++ I + + II++RG+NY++P + I P LTK
Sbjct: 406 IENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNYQRPNDGISPQGHPDGLRPCGLLTK 465
Query: 258 RKA 260
++A
Sbjct: 466 KQA 468
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 20/142 (14%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGV------------RGVFGGVVQNMHLHWKFHET 198
D E+ T E+ + ++K+G + ++ + +G RGVF GV++ +H HWK E
Sbjct: 660 DLEIMTDEERECFRKMGLKMRSCLVLGKAISLHSTTSAGRRGVFDGVLEGLHQHWKHREV 719
Query: 199 VQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTL 255
+V ++ + + R SGGI++++ +K II++RG+NY +P I N L
Sbjct: 720 AKVITMQRLISRVIYTSQFLERESGGILVSVDQLKEGYAIIIYRGKNYSRPSEKIAKNLL 779
Query: 256 TKRKALFKARFEQALESQKLNI 277
TKRKAL ++LE Q++ +
Sbjct: 780 TKRKAL-----RRSLEMQRIGV 796
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 75.5 bits (184), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 174 VPV-GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
VP+ G RGVF G ++NMHLHWK+ E V++ +K++A + SGGI++++ V
Sbjct: 4 VPLSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKV 63
Query: 233 K---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKA 264
I++FRG++Y +P L P N L+KRKAL ++
Sbjct: 64 SKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARS 98
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 149 VHDPELFTPEQLQAYKKIGFRNKNYVPV---GVRGVFGGVVQNMHLHWKFHETVQVCCDN 205
+H L P L ++ + N +V V G RGVF G+++ +H HWK E +V
Sbjct: 572 IHSCLLLIPYPLAM--RLIYINFIFVFVSFLGRRGVFVGIMEGLHQHWKHREVAKVITMQ 629
Query: 206 FPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKAL 261
++ A + S G++I+I +K I+++RG+NY++P + L+ N LTKRKAL
Sbjct: 630 KIFSRVVYTAKSLEAESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKAL 689
Query: 262 FKARFEQALESQKL 275
++ Q L S K
Sbjct: 690 QRSVAMQRLGSLKF 703
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 143 PELPPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P PPS EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++
Sbjct: 119 PSAPPSAA--ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKL 176
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C++ ++ ++ R +GG+VI + TII++RG NY P
Sbjct: 177 RCEDVWAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 220
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 143 PELPPSVHDPELFTP-EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQV 201
P PPS EL P ++L+ + IG R + + VG G+ G+V +H W+ E V++
Sbjct: 132 PSAPPSAA--ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKL 189
Query: 202 CCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
C++ ++ ++ R +GG+VI + TII++RG NY P
Sbjct: 190 RCEDVWAMNMRRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 233
>gi|302754228|ref|XP_002960538.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
gi|300171477|gb|EFJ38077.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
Length = 961
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 209 EKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP--FNTLTKRKALFKARF 266
E+ + + +ARLSGGIV+++ +T+IMFRG+NY+ P+ L P + +R A +
Sbjct: 163 EETRRIGAELARLSGGIVLDVLEDRTVIMFRGKNYQTPEELYPPTLEAVDRRNADSRHHI 222
Query: 267 EQALESQKLNIKKIEQQLRR 286
++AL+SQ + ++ Q + R
Sbjct: 223 QRALDSQ---VYRLGQYISR 239
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 11/143 (7%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
+ K + +G G+ ++ ++H HWK E V++ C P +K + T + + G +I+
Sbjct: 173 KTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 229 IHNVKTIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRM 287
H ++++RGRNY K +IP + ++ + +E L+I++ +++R+
Sbjct: 233 RH-CGLLVLYRGRNYHPKKRPVIPLMMWRPHEPIYPKLIKTTIEG--LSIEET-KEMRKK 288
Query: 288 GTNPEDPVAMASIQRVASTFFNA 310
G +A+ ++ ++A + A
Sbjct: 289 G------LALPALTKLAKNGYYA 305
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E TP +++A K + + +G G+ +++ +H HW+ E +V C P +K
Sbjct: 231 EPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 290
Query: 213 EMATMIARLSGGIVINIHNVKTII-MFRGRNY 243
+ + SGG V IH V ++ ++RGRNY
Sbjct: 291 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRNY 320
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
+ K + +G+ G+ ++ ++H HWK E V+V C P +K + T + + G +I+
Sbjct: 173 KTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 229 IHNVKTIIMFRGRNYRQPKN--LIPF 252
H ++++RGRNY P+N +IP
Sbjct: 233 RH-CGLLVLYRGRNY-HPRNRPVIPL 256
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
R K V +G G+ ++ ++H HWK E V+V C P ++ + + +GG++I+
Sbjct: 174 RTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIH 233
Query: 229 IHNVKTIIMFRGRNYRQPK-NLIPFNTLTKRKALFKARFEQALES 272
H + +I++RGR+Y K +IP + ++ + +E
Sbjct: 234 RHGGQ-LILYRGRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEG 277
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
R K + +G G+ ++ ++H HWK E V+V C P ++ + + +GG++I+
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 229 IHNVKTIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARFEQALES 272
H + +I++RGR+Y K +IP + ++ + +E
Sbjct: 233 RHGGQ-LILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEG 276
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
+V +G G+ ++ +H HWKF E V++ C P + + T + + G VI H
Sbjct: 179 HVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIFRHG- 237
Query: 233 KTIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNP 291
T+I++RGRNY K +IP + ++ + ++ L+IK+ ++ +R + P
Sbjct: 238 GTLILYRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDG--LSIKETKEMRKRGLSVP 295
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
R K + +G G+ ++ ++H HWK E V++ C P +K + T + + G VI+
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIH 239
Query: 229 IHNVKTIIMFRGRNYRQPKN-LIPF 252
++++RGRNY K +IP
Sbjct: 240 RQG-GLLVLYRGRNYHPKKRPVIPL 263
>gi|348545292|ref|XP_003460114.1| PREDICTED: laminin subunit beta-4-like, partial [Oreochromis
niloticus]
Length = 2199
Score = 38.9 bits (89), Expect = 6.7, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 401 DMDDISRRTVGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNR--SRV 458
D++++ ++ +D + + R D ++ +++DVR + D Y++D+A D+ N RV
Sbjct: 1977 DLNNLDKKVKAARDLQQEAR--DLKEQMENTDVRK---IIQDIYEADKAQDKANNLLERV 2031
Query: 459 ERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRA 518
R K E R R+ E N+EA R M ++E+++ ++E AM E+ +R
Sbjct: 2032 SRNKDETKDRIRDAEVTLDNIEA---RLMI----QTEDLWKEIE-AMKDKTEENREAARE 2083
Query: 519 SRAEANHNYMSSSDDE-----DEFYATVGNKK---NGMNEFE---SEADSSEAHNKVNNR 567
+R A + ++D E DE TV K+ + M +FE + + E + R
Sbjct: 2084 AREAAESAFNMTADAEMFHLSDENQNTVSVKQELNDVMKQFEVLKQKQQNQEVEGQAAGR 2143
Query: 568 LNKTQKEADE 577
L EA++
Sbjct: 2144 LKNIMMEAED 2153
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,957,319,884
Number of Sequences: 23463169
Number of extensions: 387318447
Number of successful extensions: 1878704
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 14267
Number of HSP's that attempted gapping in prelim test: 1672972
Number of HSP's gapped (non-prelim): 106017
length of query: 582
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 434
effective length of database: 8,886,646,355
effective search space: 3856804518070
effective search space used: 3856804518070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 80 (35.4 bits)