BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007992
(582 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)
Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
MT EE+++ L++A+KK L++ +KK E E + HDPE+ TPE+ Y K+G + KN
Sbjct: 135 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194
Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
YVPVG RG++ GV+ NMHLHWK H+T+QV F +++KE+A +ARL+GGIV+++H
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254
Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
TIIM+RG+NY QP I P TL ++KAL K++ AL + + I ++EQ+L+ +
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 291 PE 292
E
Sbjct: 315 AE 316
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D EL T E+ + ++KIG + +V +G RGVF GV++ +H HWK E V+V +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I + M+ +GG +I I T II++RG+NYR+P P N LTKR+AL
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREAL 675
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E T E+ +++IG + V +G RG+F GV++ +H HWK E V+V +
Sbjct: 560 DREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
I A+++ +GGI+I + + T II++RG+NYR+P N LTKR+AL
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREAL 673
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
D E+ T E+ + ++IG + + + +G RGVF GV++ +H HWK E +V +
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627
Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
+ A + S G++I+I +K I+++RG+NY++P + L+ N LTKRKAL ++
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687
Query: 267 EQALESQKL 275
Q L S K
Sbjct: 688 MQRLGSLKF 696
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E TP +++A K + + +G G+ +++ +H HW+ E +V C P +K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 213 EMATMIARLSGGIVINIHNVKTII-MFRGRNY 243
+ + SGG V IH V ++ ++RGR+Y
Sbjct: 292 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
R K + +G G+ ++ ++H HWK E V+V C P ++ + + +GG++I+
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 229 IHNVKTIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARFEQALES 272
H + +I++RGR+Y K +IP + ++ + +E
Sbjct: 233 RHGGQ-LILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEG 276
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 183 GGVVQNM----HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
GGV NM H HWK E V++ C P + + + +GG VI N+ +I++
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-YRNINILILY 229
Query: 239 RGRNYRQPKN--LIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
RGRNY PK IP L K A R Q + + L +K ++LR G N
Sbjct: 230 RGRNY-DPKQRPQIPL-MLWKPLAPIYPRLVQNV-ADGLTFEK-TKELRNTGLN 279
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 183 GGVVQNM----HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
GGV NM H HWK E V++ C P + + + SGG ++ N+ ++++
Sbjct: 169 GGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-YRNINILVLY 227
Query: 239 RGRNYRQPKN--LIPF 252
RGRNY PK+ +IP
Sbjct: 228 RGRNY-DPKSRPIIPL 242
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
E T E++ K + K + +G G+ +++N+H HWK ++ C +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 213 EMATMIARLSGGIVINIHNVKTIIMFRGRNY 243
+ + GG VI+ H I +FRGRNY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,941,472
Number of Sequences: 539616
Number of extensions: 9506970
Number of successful extensions: 52260
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 1307
Number of HSP's that attempted gapping in prelim test: 41671
Number of HSP's gapped (non-prelim): 7026
length of query: 582
length of database: 191,569,459
effective HSP length: 123
effective length of query: 459
effective length of database: 125,196,691
effective search space: 57465281169
effective search space used: 57465281169
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)