Query 007992
Match_columns 582
No_of_seqs 186 out of 646
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 15:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 3.5E-30 1.2E-34 224.7 13.3 97 154-252 1-97 (104)
2 1jo0_A Hypothetical protein HI 100.0 1.1E-29 3.8E-34 219.0 13.1 96 154-252 2-97 (98)
3 2h9u_A DNA/RNA-binding protein 39.8 1.1E+02 0.0039 26.4 8.0 61 171-231 6-68 (102)
4 2g0u_A Type III secretion syst 30.6 40 0.0014 29.3 3.5 33 274-306 30-62 (92)
5 2bky_A DNA/RNA-binding protein 28.5 1.9E+02 0.0065 24.8 7.4 61 171-231 9-71 (97)
6 1pq4_A Periplasmic binding pro 25.8 2.3E+02 0.0079 27.5 8.5 131 81-229 134-266 (291)
7 1ofc_X ISWI protein; nuclear p 25.4 1.6E+02 0.0055 30.0 7.5 124 63-194 106-250 (304)
8 1nfj_A ALBA, conserved hypothe 24.7 2.1E+02 0.0071 24.1 6.9 60 172-231 4-64 (89)
9 3n70_A Transport activator; si 24.6 1.6E+02 0.0055 24.7 6.3 63 160-225 14-79 (145)
10 1nh9_A MJA10B, DNA-binding pro 23.6 2.5E+02 0.0087 23.4 7.2 61 170-231 1-62 (87)
11 1ydh_A AT5G11950; structural g 23.2 1.1E+02 0.0036 29.3 5.4 32 162-193 127-158 (216)
12 2ca5_A MXIH; transport protein 21.5 59 0.002 28.0 2.9 30 277-306 27-56 (85)
13 3sbx_A Putative uncharacterize 21.3 1.1E+02 0.0036 28.9 4.9 32 162-193 130-161 (189)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.97 E-value=3.5e-30 Score=224.66 Aligned_cols=97 Identities=12% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK 233 (582)
Q Consensus 154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~ 233 (582)
|||++||++||++||+|+|+|+|||+|||++||++|+.||++||||||+|++++.++++++|++|++.|||+|||+|| +
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG-~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG-S 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET-T
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEecCCCCCCCCCCCCc
Q 007992 234 TIIMFRGRNYRQPKNLIPF 252 (582)
Q Consensus 234 tIILYRGKNYkrPkilLPr 252 (582)
++||||+++ ..|.+.+|-
T Consensus 80 ~~VLYR~~~-~~~~i~~~~ 97 (104)
T 1rq8_A 80 MIVIYRESK-ENKEIELPL 97 (104)
T ss_dssp EEEEEECCC-SCCSCCCC-
T ss_pred EEEEEeCCC-CCCceeccc
Confidence 999999877 678999984
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=1.1e-29 Score=218.97 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992 154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK 233 (582)
Q Consensus 154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~ 233 (582)
.||++||+|||++||+|+|+|+|||+|||++||++|+.||++||||||+|++++.++++++|++|++.|||+|||+|| +
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG-~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG-H 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET-T
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEecCCCCCCCCCCCCc
Q 007992 234 TIIMFRGRNYRQPKNLIPF 252 (582)
Q Consensus 234 tIILYRGKNYkrPkilLPr 252 (582)
++||||++.. |.+.||.
T Consensus 81 ~~vLyR~~~~--~~i~lp~ 97 (98)
T 1jo0_A 81 ILVLYRPSEE--AKIQLPR 97 (98)
T ss_dssp EEEEECCCSS--CCBCCCC
T ss_pred EEEEEccCCC--CCcCCCC
Confidence 9999998743 7888885
No 3
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=39.82 E-value=1.1e+02 Score=26.41 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=50.6
Q ss_pred CceEEeCCCCCcHHHHHHHHHHhhh-CCeEeEEecCCCHHHHHHHHHHHHHHh-CCEEEEEEc
Q 007992 171 KNYVPVGVRGVFGGVVQNMHLHWKF-HETVQVCCDNFPKEKIKEMATMIARLS-GGIVINIHN 231 (582)
Q Consensus 171 KPVV~IGKrGVTDgVIeeIh~AwK~-HELVKVK~lqns~ed~kEiAeeLAe~T-GGeLVQVIG 231 (582)
...|.||+.|++..|...+...|.. +.-|.|+-.+..-...-.+|+.|.+.. +|.-|+.|.
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~ 68 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIK 68 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEE
Confidence 4789999999999999888556654 778899999988888889999999999 676667765
No 4
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=30.55 E-value=40 Score=29.35 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHhhhh
Q 007992 274 KLNIKKIEQQLRRMGTNPEDPVAMASIQRVAST 306 (582)
Q Consensus 274 k~~I~~le~~l~~m~~~~e~~~~m~~~~~v~s~ 306 (582)
+..-.+|...|+.|..+|.+|...|.+|..-+.
T Consensus 30 ~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lse 62 (92)
T 2g0u_A 30 KDLNKQLQDAQANLTKNPSDPTALANYQMIMSE 62 (92)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 445567888899999999999999999995544
No 5
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=28.55 E-value=1.9e+02 Score=24.78 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=47.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCE-E-EEEEc
Q 007992 171 KNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGI-V-INIHN 231 (582)
Q Consensus 171 KPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGe-L-VQVIG 231 (582)
...|.||+.|+..-|...+.+-=+.+.-|.|+-.+..-...-.+|+.|.....+. | ++.|.
T Consensus 9 ~n~I~V~~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~ 71 (97)
T 2bky_A 9 SNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIR 71 (97)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEE
T ss_pred CCEEEEcCcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEE
Confidence 4789999999877777776654444788999999988888889999999988552 4 56543
No 6
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.80 E-value=2.3e+02 Score=27.45 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=75.1
Q ss_pred cccchHHHHHHHHHhhhhHHHHHHHHHHHHhhcCHHHHHHH--HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCHH
Q 007992 81 RSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIY--NLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPE 158 (582)
Q Consensus 81 r~~~sk~e~rm~ke~~k~~~elr~~kk~~~k~~~~eerl~~--~L~~ak~k~e~ll~KL~k~~~P~~p~p~~DpEmLTsK 158 (582)
-|++...-..|.+++...|.++- |+..-.| +.+.-+.+.+.|-+.++....+- +. ..--..-+-
T Consensus 134 ~Wldp~~~~~~a~~I~~~L~~~d-----------P~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~-~~--~~~v~~H~a 199 (291)
T 1pq4_A 134 IWLSPTLVKRQATTIAKELAELD-----------PDNRDQYEANLAAFLAELERLNQELGQILQPL-PQ--RKFIVFHPS 199 (291)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHC-----------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SC--CEEEESSCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHC-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC--CEEEEECCc
Confidence 68888888899888888887742 1111111 12222222233333322221111 00 001111233
Q ss_pred HHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEE
Q 007992 159 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINI 229 (582)
Q Consensus 159 QRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQV 229 (582)
--++.+..|+..-++..+| .-.+..-|.+|-..++.+.+-=|-+..... ..+++.|++.+|+.+|.+
T Consensus 200 f~Yf~~~yGl~~~~~~~~~-~eps~~~l~~l~~~ik~~~v~~If~e~~~~---~~~~~~ia~~~g~~v~~l 266 (291)
T 1pq4_A 200 WAYFARDYNLVQIPIEVEG-QEPSAQELKQLIDTAKENNLTMVFGETQFS---TKSSEAIAAEIGAGVELL 266 (291)
T ss_dssp CHHHHHHTTCEEEESCBTT-BCCCHHHHHHHHHHHHTTTCCEEEEETTSC---CHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHCCCEEeecccCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---hHHHHHHHHHcCCeEEEE
Confidence 4678888888866665555 567999999999999988764444432221 347788899999877653
No 7
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=25.42 E-value=1.6e+02 Score=29.96 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCCCCCccccccccc------ccccccchHHHHHHHHHh-hhhHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHH-
Q 007992 63 LNYPFNRWSRAMSTS------KRGRSMRSKVERRMQKES-GKTMREIRRAKKIKKK---LMTDEERLIYNLKRAKKKVA- 131 (582)
Q Consensus 63 ~~~~~~~~~~~~~t~------~~gr~~~sk~e~rm~ke~-~k~~~elr~~kk~~~k---~~~~eerl~~~L~~ak~k~e- 131 (582)
|.+.|++|++..... ++||.--. .+..++ +|++-+++++-+.-++ .+..-+|++..|++..+|..
T Consensus 106 l~eGF~~W~rrdf~~Fi~a~~kyGr~~~~----~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r 181 (304)
T 1ofc_X 106 LSQGFTAWTKRDFNQFIKANEKYGRDDID----NIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQR 181 (304)
T ss_dssp TTSSCTTCCHHHHHHHHHHHHHHCTTCHH----HHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCHHHHHHHHHHHHHhCHHHHH----HHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHH
Confidence 457899998765553 66774332 344455 7889998877654443 45778899988887655442
Q ss_pred ------HHHHHhcccCCCCCC----CCCCCCCCCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhh
Q 007992 132 ------LLLQKLKKYELPELP----PSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK 194 (582)
Q Consensus 132 ------~ll~KL~k~~~P~~p----~p~~DpEmLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK 194 (582)
.|-.|+..|.-|... -+....-..|.+|=++|==+-|+. -++..|+++.+-..|..+|.
T Consensus 182 ~~~~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~----G~~~~g~we~Ir~~Ir~~p~ 250 (304)
T 1ofc_X 182 RLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKL----GFDKENVYEELRAAIRASPQ 250 (304)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHh----cCCCcchHHHHHHHHHhCcc
Confidence 244577777766311 112234457877776665444432 12334666666666665543
No 8
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=24.72 E-value=2.1e+02 Score=24.08 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=47.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHh-CCEEEEEEc
Q 007992 172 NYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLS-GGIVINIHN 231 (582)
Q Consensus 172 PVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~T-GGeLVQVIG 231 (582)
..|.||+.|++.-|...+.+--+.+.-|.|+-.+..-...-.+|+.|.... .|.-|+-+.
T Consensus 4 n~I~V~~k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~ 64 (89)
T 1nfj_A 4 HVVYVGNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIK 64 (89)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 678999999998888877764444788999999988888889999999988 555545543
No 9
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=24.58 E-value=1.6e+02 Score=24.73 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=40.9
Q ss_pred HHHHHhhcccCCceEEeCCCCCcHHHHH-HHHHHhh--hCCeEeEEecCCCHHHHHHHHHHHHHHhCCE
Q 007992 160 LQAYKKIGFRNKNYVPVGVRGVFGGVVQ-NMHLHWK--FHETVQVCCDNFPKEKIKEMATMIARLSGGI 225 (582)
Q Consensus 160 RryLRKlAhkLKPVV~IGKrGVTDgVIe-eIh~AwK--~HELVKVK~lqns~ed~kEiAeeLAe~TGGe 225 (582)
+..++..+..-.|++..|..|.--..+. .||.+.. ...+| |.|...... ......++...||.
T Consensus 14 ~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~~g~ 79 (145)
T 3n70_A 14 RRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQGGT 79 (145)
T ss_dssp HHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHTTSC
T ss_pred HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcCCcE
Confidence 3455666778889999999999988776 5555442 45788 988764432 23334444444543
No 10
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=23.57 E-value=2.5e+02 Score=23.43 Aligned_cols=61 Identities=21% Similarity=0.153 Sum_probs=48.3
Q ss_pred CCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHh-CCEEEEEEc
Q 007992 170 NKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLS-GGIVINIHN 231 (582)
Q Consensus 170 LKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~T-GGeLVQVIG 231 (582)
|...|.||+..+..-|...+.+-=+ ..-|.|+-.+..-...-.+|+.|.... ++.-|+-|.
T Consensus 1 ~~n~I~V~~k~v~~YV~~~~~~l~~-g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~ 62 (87)
T 1nh9_A 1 MDNVVLIGKKPVMNYVVAVLTQLTS-NDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIE 62 (87)
T ss_dssp CCSEEEECSSCHHHHHHHHHHHHHH-CSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CCCEEEEeCcchHHHHHHHHHHhcC-CCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 5789999999888888888765444 488899999988888889999999988 555445443
No 11
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=23.24 E-value=1.1e+02 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=26.7
Q ss_pred HHHhhcccCCceEEeCCCCCcHHHHHHHHHHh
Q 007992 162 AYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193 (582)
Q Consensus 162 yLRKlAhkLKPVV~IGKrGVTDgVIeeIh~Aw 193 (582)
-|..+|.+-+|++.+|..|.++.++.-|+...
T Consensus 127 t~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~ 158 (216)
T 1ydh_A 127 TWSQLGIHKKTVGLLNVDGYYNNLLALFDTGV 158 (216)
T ss_dssp HHHHHTSCCCEEEEECGGGTTHHHHHHHHHHH
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHHHHH
Confidence 35667788999999999999999999886443
No 12
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=21.50 E-value=59 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHhhhh
Q 007992 277 IKKIEQQLRRMGTNPEDPVAMASIQRVAST 306 (582)
Q Consensus 277 I~~le~~l~~m~~~~e~~~~m~~~~~v~s~ 306 (582)
-..+.+.|+.|..+|.||.+.|+.|..-+.
T Consensus 27 ~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~e 56 (85)
T 2ca5_A 27 QGELTLALDKLAKNPSNPQLLAEYQSKLSE 56 (85)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356888899999999999999999995543
No 13
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=21.25 E-value=1.1e+02 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHhhcccCCceEEeCCCCCcHHHHHHHHHHh
Q 007992 162 AYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193 (582)
Q Consensus 162 yLRKlAhkLKPVV~IGKrGVTDgVIeeIh~Aw 193 (582)
-|..+|.+-+|++.+|.+|.++.++.-++...
T Consensus 130 t~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~ 161 (189)
T 3sbx_A 130 TEGYLGMHDKSIVVLDPWGHFDGLRAWLSELA 161 (189)
T ss_dssp HHHHTTSCCCCEEEECTTCTTHHHHHHHHHHH
T ss_pred HHHHhcccCCCEEEecCCccchHHHHHHHHHH
Confidence 45677778899999999999999999887433
Done!