BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007997
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87
Query: 421 LV 422
V
Sbjct: 88 RV 89
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 59 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118
Query: 421 LV 422
V
Sbjct: 119 RV 120
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 25 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 84
Query: 421 LV 422
V
Sbjct: 85 RV 86
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 362 STFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCG 417
+T E + F ++GP++ V+I C +Q R +GFV F + +Q +A N +
Sbjct: 52 TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111
Query: 418 ARVLV 422
R+ V
Sbjct: 112 KRLKV 116
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQIL 407
T++D+ +YFSKFG V D + + R FGFV F +E+V +++
Sbjct: 12 TKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 58
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
TE+D+ FSK+GP+ DV I Q+ R F FV F + K+ + N + G R+
Sbjct: 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87
Query: 421 LV 422
V
Sbjct: 88 RV 89
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 35.4 bits (80), Expect = 0.086, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 366 EQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 409
E+ + YF FG V+ + +P K R F F+TF E VK+I+ K
Sbjct: 15 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 62
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 366 EQDVSNYFSKFGPVQDVRIPCQQK----RMFGFVTFVFAETVKQILAK 409
E+ + YF FG V+ + +P K R F F+TF E VK+I+ K
Sbjct: 13 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 17/75 (22%)
Query: 365 TEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
+++D+ +YF+KFG V D I + R FGF+ F A +V+++L +
Sbjct: 24 SKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQ----------- 72
Query: 421 LVKPYREKSRLVDRK 435
K +R R++D K
Sbjct: 73 --KEHRLDGRVIDPK 85
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 338 SGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQK----RMFG 393
SG + S I L P ++T EQD+ YFS FG V V++ K + FG
Sbjct: 3 SGSSGVKRAVQKTSDLIVLGLPWKTT--EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFG 60
Query: 394 FVTFVFAETVKQILAK 409
FV F ET +++++
Sbjct: 61 FVRFTEYETQVKVMSQ 76
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 365 TEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQI 406
T +DV +YF +FG V D + + R FGFVTF + V+++
Sbjct: 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 363 TFTEQDVSNYFSKFGPVQDVRIP----CQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418
T +E+D+ FS +GP+ ++ P ++ + F FVTF+F E + A+ + G
Sbjct: 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78
Query: 419 RVLVKP 424
+ V P
Sbjct: 79 MLHVLP 84
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 365 TEQDVSNYFSKFGPVQD---VRIPCQQK-RMFGFVTFVFAETVKQILAKGNPHFVCGARV 420
TE+ + NY+ ++G + D +R P ++ R FGFVTF V +A PH + G
Sbjct: 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR-- 96
Query: 421 LVKPYREKSR 430
+V+P R +R
Sbjct: 97 VVEPKRAVAR 106
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 365 TEQDVSNYFSKFGPVQD---VRIPCQQK-RMFGFVTFVFAETVKQILAK 409
T++ + YF +FG V++ +R P ++ R FGFVTF+ V ++LA+
Sbjct: 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 366 EQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGAR 419
E ++ YF KFG V +V + Q+ R FGF+TF ++V Q + N HF + G +
Sbjct: 24 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV---NMHFHDIMGKK 80
Query: 420 VLVK 423
V VK
Sbjct: 81 VEVK 84
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 184 SPSLPEFPVK--VCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFSP 241
S S E P K +C ++ GFC NC Y HG P +++ N I +D +FS
Sbjct: 3 SGSSGELPKKRELCKFYITGFCARAENCPYMHGD-FP---CKLYHTTGNCINGDDCMFSH 58
Query: 242 GSLERLEAEITELLKQ 257
+ L E ELL +
Sbjct: 59 ---DPLTEETRELLDK 71
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 365 TEQDVSNYFSKFGPVQD---VRIPCQQK-RMFGFVTFVFAETVKQILAK 409
T++ + YF +FG V++ +R P ++ R FGFVTF+ V ++LA+
Sbjct: 38 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86
>pdb|1B5T|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
Length = 275
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTK 301
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ + + A ++T+
Sbjct: 106 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQADLLNLKRKVDAGANRAITQ 163
Query: 302 LLARLKNSIRLIDRC 316
+++ +R DRC
Sbjct: 164 FFFDVESYLRFRDRC 178
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 366 EQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421
EQ + FSK+G + +V + Q+ R FGFVTF + K + N V G ++
Sbjct: 26 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85
Query: 422 V 422
V
Sbjct: 86 V 86
>pdb|1ZP4|A Chain A, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|B Chain B, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|C Chain C, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
Length = 304
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTK 301
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ + + A ++T+
Sbjct: 126 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQADLLNLKRKVDAGANRAITQ 183
Query: 302 LLARLKNSIRLIDRC 316
+++ +R DRC
Sbjct: 184 FFFDVESYLRFRDRC 198
>pdb|1ZP3|A Chain A, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|B Chain B, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|C Chain C, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZPT|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZRQ|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
Length = 304
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTK 301
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ + + A ++T+
Sbjct: 126 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQADLLNLKRKVDAGANRAITQ 183
Query: 302 LLARLKNSIRLIDRC 316
+++ +R DRC
Sbjct: 184 FFFDVESYLRFRDRC 198
>pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
pdb|3GET|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Np_281508.1) From Campylobacter Jejuni
At 2.01 A Resolution
Length = 365
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 232 IRNEDHVFSPGSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQR 291
++NE+ + GS + +E I L + F A + YE Y K A+ Y T+S
Sbjct: 80 VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQ--AGVTFAXYEIYAKQCGAKCYKTQSIT 137
Query: 292 HGKAGYSLTKLLARLKNSIRLIDRC--NLPHGQ 322
H + KL K+ I+LI C N P G+
Sbjct: 138 HNLDEFK--KLYETHKDEIKLIFLCLPNNPLGE 168
>pdb|3FSU|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
Length = 304
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTK 301
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ + + A ++T+
Sbjct: 126 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQADLLNLKRKVDAGANRAITQ 183
Query: 302 LLARLKNSIRLIDRC 316
+++ +R DRC
Sbjct: 184 FFFDVESYLRFRDRC 198
>pdb|3FST|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
Length = 304
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSLTK 301
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ + + A ++T+
Sbjct: 126 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQADLLNLKRKVDAGANRAITQ 183
Query: 302 LLARLKNSIRLIDRC 316
+++ +R DRC
Sbjct: 184 FFFDVESYLRFRDRC 198
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 365 TEQDVSNYFSKFGPVQDVRI----PCQQKRMFGFVTFVFAETVKQIL 407
TE ++ YF K+G V D++I + R FGF++F +V +++
Sbjct: 16 TEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 62
>pdb|2FMN|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMO|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
Length = 304
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 242 GSLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY--SL 299
G E +++ LLK+ F IS+A+ P ++ E K+ QA+ L +R AG ++
Sbjct: 126 GKPEMYASDLVTLLKEVADFDISVAAYPEVHPE--AKSAQAD--LLNLKRKVDAGVNRAI 181
Query: 300 TKLLARLKNSIRLIDRC 316
T+ +++ +R DRC
Sbjct: 182 TQFFFDVESYLRFRDRC 198
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 319 PHGQHSVILAEDVPKYLEYSGEKSD------PGGIVAGSRQIYLTFPAESTFTEQDVSNY 372
PH V LA P + E++ PG V G R + PA + + VS Y
Sbjct: 296 PHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGY 355
Query: 373 FSKF-GPVQDVRIPCQQKRMFG 393
+F G V+ + +P R+FG
Sbjct: 356 SPRFRGLVKALSVPNATVRLFG 377
>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
Cleavage And Polyadenylation Specificity Factor
Length = 77
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 194 VCHYFNKGFCKHGNNCRYFHGH---PMPESF 221
VC ++ +G CK G+ C + H + MPE +
Sbjct: 12 VCKHWLRGLCKKGDQCEFLHEYDMTKMPECY 42
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 194 VCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVF 239
VC ++ +G CK G+ C + H + M + F + N++ F
Sbjct: 18 VCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPF 63
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 363 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVL 421
T TE D+ N+F +FG ++ + + Q++ F+ F + + K N V G R+
Sbjct: 23 TITETDLRNHFYQFGEIRTITV--VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80
Query: 422 VK 423
VK
Sbjct: 81 VK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,204,389
Number of Sequences: 62578
Number of extensions: 690916
Number of successful extensions: 1522
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 42
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)