Query 007997
Match_columns 582
No_of_seqs 354 out of 1761
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 18:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 3.6E-15 7.8E-20 139.7 11.7 83 348-431 31-117 (144)
2 KOG0153 Predicted RNA-binding 99.5 3.3E-14 7.1E-19 147.4 11.3 76 349-427 226-302 (377)
3 KOG0149 Predicted RNA-binding 99.5 2E-14 4.4E-19 142.8 7.1 75 351-427 12-90 (247)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 7.7E-14 1.7E-18 145.2 11.0 79 351-430 269-351 (352)
5 TIGR01659 sex-lethal sex-letha 99.5 1.7E-13 3.6E-18 145.3 11.8 82 350-432 192-279 (346)
6 KOG0144 RNA-binding protein CU 99.5 2.3E-14 4.9E-19 151.8 5.0 152 272-436 54-214 (510)
7 TIGR01645 half-pint poly-U bin 99.5 1.9E-13 4E-18 153.5 12.2 79 350-429 203-285 (612)
8 KOG0125 Ataxin 2-binding prote 99.5 1.5E-13 3.2E-18 141.8 8.8 81 348-429 93-175 (376)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.4E-13 9.5E-18 139.5 10.8 79 351-430 3-85 (352)
10 PF00076 RRM_1: RNA recognitio 99.4 4.4E-13 9.5E-18 106.8 8.3 67 354-421 1-70 (70)
11 TIGR01622 SF-CC1 splicing fact 99.4 6.9E-13 1.5E-17 143.3 10.7 79 348-427 183-265 (457)
12 TIGR01628 PABP-1234 polyadenyl 99.4 7.2E-13 1.6E-17 147.4 10.4 84 349-433 283-369 (562)
13 TIGR01659 sex-lethal sex-letha 99.4 1.1E-12 2.4E-17 139.1 10.5 81 348-429 104-188 (346)
14 PLN03120 nucleic acid binding 99.4 1.4E-12 3.1E-17 132.6 10.6 76 351-428 4-80 (260)
15 KOG0147 Transcriptional coacti 99.4 2.3E-13 4.9E-18 147.9 4.8 158 271-432 198-362 (549)
16 KOG0148 Apoptosis-promoting RN 99.3 5.8E-12 1.3E-16 127.5 10.6 85 345-432 158-242 (321)
17 TIGR01628 PABP-1234 polyadenyl 99.3 1.3E-11 2.9E-16 137.4 14.0 83 348-431 175-264 (562)
18 PLN03213 repressor of silencin 99.3 4.3E-12 9.3E-17 136.3 9.3 77 351-428 10-88 (759)
19 KOG0113 U1 small nuclear ribon 99.3 1.1E-11 2.3E-16 126.9 10.6 86 342-428 92-181 (335)
20 KOG0111 Cyclophilin-type pepti 99.3 2.4E-12 5.1E-17 127.1 4.2 80 350-430 9-92 (298)
21 smart00362 RRM_2 RNA recogniti 99.3 3.3E-11 7.2E-16 94.0 9.6 70 353-423 1-72 (72)
22 PF14259 RRM_6: RNA recognitio 99.3 2.1E-11 4.5E-16 98.6 8.7 67 354-421 1-70 (70)
23 TIGR01645 half-pint poly-U bin 99.2 1.8E-11 4E-16 137.6 10.2 77 350-427 106-186 (612)
24 PLN03121 nucleic acid binding 99.2 3.3E-11 7.1E-16 121.3 10.6 76 350-427 4-80 (243)
25 KOG0148 Apoptosis-promoting RN 99.2 2E-11 4.4E-16 123.6 6.8 82 351-433 62-147 (321)
26 KOG0107 Alternative splicing f 99.2 3.5E-11 7.6E-16 115.5 8.0 78 351-430 10-87 (195)
27 COG0724 RNA-binding proteins ( 99.2 6.9E-11 1.5E-15 113.1 10.1 76 351-427 115-194 (306)
28 smart00360 RRM RNA recognition 99.2 9.6E-11 2.1E-15 90.9 8.5 67 356-423 1-71 (71)
29 KOG0122 Translation initiation 99.2 8.4E-11 1.8E-15 117.8 10.0 78 350-428 188-269 (270)
30 KOG4205 RNA-binding protein mu 99.2 1.8E-11 3.8E-16 128.0 5.2 84 350-435 96-183 (311)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.5E-15 127.7 11.7 80 349-429 293-376 (509)
32 KOG4207 Predicted splicing fac 99.2 3E-11 6.4E-16 118.6 6.3 77 351-428 13-93 (256)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.3E-10 2.8E-15 128.0 11.2 80 348-429 272-352 (481)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.4E-10 2.9E-15 127.8 10.8 76 350-428 1-78 (481)
35 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.3E-15 129.8 10.8 78 349-431 231-310 (578)
36 TIGR01622 SF-CC1 splicing fact 99.1 1.7E-10 3.7E-15 124.8 10.6 78 349-428 87-168 (457)
37 cd00590 RRM RRM (RNA recogniti 99.1 4.3E-10 9.4E-15 88.1 9.8 71 353-424 1-74 (74)
38 PF13893 RRM_5: RNA recognitio 99.1 3.1E-10 6.7E-15 88.8 8.2 56 369-425 1-56 (56)
39 TIGR01648 hnRNP-R-Q heterogene 99.1 2.2E-10 4.8E-15 128.5 10.1 77 350-427 57-137 (578)
40 KOG0131 Splicing factor 3b, su 99.1 1.5E-10 3.3E-15 111.7 6.6 76 351-427 9-88 (203)
41 KOG0127 Nucleolar protein fibr 99.0 1E-09 2.2E-14 119.7 11.3 82 351-433 117-201 (678)
42 KOG4205 RNA-binding protein mu 99.0 3E-10 6.4E-15 118.9 4.2 81 350-432 5-89 (311)
43 KOG0108 mRNA cleavage and poly 99.0 1.5E-09 3.2E-14 118.2 9.2 83 347-430 13-100 (435)
44 smart00361 RRM_1 RNA recogniti 98.9 2.6E-09 5.6E-14 87.9 7.7 57 366-422 2-69 (70)
45 KOG0126 Predicted RNA-binding 98.9 1.7E-10 3.7E-15 111.5 0.2 77 349-426 33-113 (219)
46 KOG0114 Predicted RNA-binding 98.9 4.4E-09 9.4E-14 93.9 8.6 79 350-429 17-96 (124)
47 KOG0124 Polypyrimidine tract-b 98.9 2.8E-09 6E-14 111.7 8.3 137 273-427 134-289 (544)
48 KOG0124 Polypyrimidine tract-b 98.9 7.9E-10 1.7E-14 115.8 4.3 73 352-425 114-190 (544)
49 KOG0121 Nuclear cap-binding pr 98.9 2.5E-09 5.5E-14 98.5 6.6 77 349-426 34-114 (153)
50 KOG0117 Heterogeneous nuclear 98.9 3.2E-09 6.8E-14 113.7 8.3 81 347-432 255-335 (506)
51 KOG0109 RNA-binding protein LA 98.9 1E-09 2.2E-14 112.4 4.0 77 348-429 75-151 (346)
52 KOG0117 Heterogeneous nuclear 98.9 5.9E-09 1.3E-13 111.7 9.7 77 349-426 81-162 (506)
53 KOG0131 Splicing factor 3b, su 98.8 7.2E-09 1.6E-13 100.3 8.0 85 349-434 94-183 (203)
54 TIGR01642 U2AF_lg U2 snRNP aux 98.8 9.7E-09 2.1E-13 112.5 9.5 76 348-427 172-259 (509)
55 KOG0132 RNA polymerase II C-te 98.8 7E-09 1.5E-13 116.8 7.5 80 350-432 420-499 (894)
56 KOG0127 Nucleolar protein fibr 98.8 3.8E-08 8.3E-13 107.6 12.6 80 352-432 293-382 (678)
57 KOG0109 RNA-binding protein LA 98.8 6.7E-09 1.5E-13 106.5 6.2 77 352-433 3-79 (346)
58 KOG0130 RNA-binding protein RB 98.8 8.1E-09 1.8E-13 95.9 5.7 78 352-430 73-154 (170)
59 KOG0144 RNA-binding protein CU 98.8 1.3E-08 2.8E-13 108.7 7.1 80 351-431 34-120 (510)
60 KOG0105 Alternative splicing f 98.7 2.3E-08 5E-13 97.1 7.1 80 349-429 4-84 (241)
61 KOG0145 RNA-binding protein EL 98.7 3.7E-08 8.1E-13 99.8 8.8 77 351-428 278-358 (360)
62 KOG4206 Spliceosomal protein s 98.7 3E-08 6.6E-13 98.6 8.0 85 350-435 8-97 (221)
63 KOG0145 RNA-binding protein EL 98.6 9.7E-08 2.1E-12 96.8 9.4 81 350-431 40-124 (360)
64 KOG0123 Polyadenylate-binding 98.6 1.1E-07 2.3E-12 102.2 7.9 77 354-432 79-157 (369)
65 KOG0146 RNA-binding protein ET 98.6 9.8E-08 2.1E-12 97.1 6.7 86 349-435 17-108 (371)
66 KOG4212 RNA-binding protein hn 98.5 3.4E-07 7.4E-12 98.2 9.2 77 349-426 42-122 (608)
67 KOG4208 Nucleolar RNA-binding 98.5 2.6E-07 5.6E-12 91.1 7.2 77 351-428 49-130 (214)
68 KOG0415 Predicted peptidyl pro 98.4 2.9E-07 6.3E-12 96.6 6.7 81 346-427 234-318 (479)
69 KOG0123 Polyadenylate-binding 98.4 3.3E-07 7.1E-12 98.5 6.5 79 349-428 268-349 (369)
70 KOG0146 RNA-binding protein ET 98.4 3.1E-07 6.7E-12 93.6 4.8 83 347-430 281-367 (371)
71 KOG0110 RNA-binding protein (R 98.3 9.2E-07 2E-11 99.5 8.1 73 353-426 517-596 (725)
72 KOG4454 RNA binding protein (R 98.2 4.2E-07 9.1E-12 90.5 2.3 80 348-429 6-88 (267)
73 KOG4661 Hsp27-ERE-TATA-binding 98.2 2.3E-06 5E-11 94.2 6.8 76 351-427 405-484 (940)
74 KOG0110 RNA-binding protein (R 98.2 1.5E-06 3.2E-11 97.9 4.9 81 351-432 613-697 (725)
75 KOG0116 RasGAP SH3 binding pro 98.1 5.8E-06 1.3E-10 90.1 8.2 74 352-427 289-366 (419)
76 KOG0151 Predicted splicing reg 98.1 7.3E-06 1.6E-10 92.3 8.6 79 348-427 171-256 (877)
77 KOG0106 Alternative splicing f 98.0 5.7E-06 1.2E-10 82.9 4.1 72 352-428 2-73 (216)
78 KOG0533 RRM motif-containing p 97.9 2.7E-05 5.9E-10 79.4 7.8 79 349-428 81-162 (243)
79 KOG4212 RNA-binding protein hn 97.9 2.1E-05 4.6E-10 84.8 7.0 73 349-424 534-607 (608)
80 KOG4209 Splicing factor RNPS1, 97.9 1.7E-05 3.6E-10 80.5 5.4 78 349-428 99-180 (231)
81 KOG2135 Proteins containing th 97.7 8.2E-05 1.8E-09 81.0 8.4 81 346-429 367-447 (526)
82 KOG4660 Protein Mei2, essentia 97.6 3E-05 6.5E-10 85.7 3.4 72 348-421 72-143 (549)
83 KOG0226 RNA-binding proteins [ 97.5 6.2E-05 1.4E-09 76.6 3.8 78 350-428 189-270 (290)
84 KOG1190 Polypyrimidine tract-b 97.5 0.00041 8.8E-09 74.7 9.0 78 351-429 297-374 (492)
85 PF00642 zf-CCCH: Zinc finger 97.3 4.9E-05 1.1E-09 52.2 -0.1 23 192-214 3-26 (27)
86 KOG1457 RNA binding protein (c 97.3 0.00097 2.1E-08 67.1 8.7 86 350-436 33-126 (284)
87 KOG4211 Splicing factor hnRNP- 97.2 0.0011 2.3E-08 72.9 8.7 77 349-428 8-86 (510)
88 KOG0106 Alternative splicing f 97.2 0.00035 7.6E-09 70.2 4.3 69 351-424 99-167 (216)
89 KOG0120 Splicing factor U2AF, 97.2 0.0011 2.4E-08 73.7 8.3 192 349-559 287-493 (500)
90 KOG1548 Transcription elongati 97.1 0.0015 3.3E-08 69.2 7.9 76 350-426 133-219 (382)
91 KOG0147 Transcriptional coacti 96.9 0.0004 8.6E-09 77.0 2.2 75 351-427 179-257 (549)
92 KOG1855 Predicted RNA-binding 96.9 0.0013 2.8E-08 71.3 5.6 118 291-414 168-310 (484)
93 smart00356 ZnF_C3H1 zinc finge 96.8 0.00067 1.5E-08 45.5 1.5 22 193-214 5-26 (27)
94 PF08777 RRM_3: RNA binding mo 96.8 0.0027 5.8E-08 57.1 5.8 56 354-412 4-59 (105)
95 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0039 8.6E-08 49.3 5.9 52 352-407 2-53 (53)
96 PF11608 Limkain-b1: Limkain b 96.7 0.0054 1.2E-07 53.5 6.6 70 352-428 3-77 (90)
97 KOG4210 Nuclear localization s 96.7 0.0011 2.3E-08 69.4 2.7 80 350-431 183-267 (285)
98 KOG4211 Splicing factor hnRNP- 96.6 0.0054 1.2E-07 67.6 8.1 75 350-426 102-180 (510)
99 PF04059 RRM_2: RNA recognitio 96.6 0.011 2.3E-07 52.8 8.2 78 352-430 2-89 (97)
100 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.013 2.9E-07 52.4 7.3 70 353-427 8-91 (100)
101 KOG1548 Transcription elongati 96.3 0.027 5.9E-07 60.0 10.4 85 345-429 259-353 (382)
102 COG5175 MOT2 Transcriptional r 96.2 0.01 2.2E-07 62.9 6.9 78 351-428 114-203 (480)
103 KOG0120 Splicing factor U2AF, 96.1 0.013 2.9E-07 65.4 7.5 62 367-428 424-492 (500)
104 KOG0129 Predicted RNA-binding 96.1 0.02 4.4E-07 63.5 8.7 79 346-426 365-452 (520)
105 KOG0129 Predicted RNA-binding 95.9 0.018 3.8E-07 64.0 7.3 75 348-427 256-340 (520)
106 KOG4206 Spliceosomal protein s 95.8 0.035 7.5E-07 56.1 8.2 78 347-426 142-220 (221)
107 KOG1457 RNA binding protein (c 95.4 0.016 3.5E-07 58.7 4.2 69 346-415 205-273 (284)
108 KOG1995 Conserved Zn-finger pr 95.4 0.02 4.3E-07 61.1 4.9 82 348-430 63-156 (351)
109 PF00658 PABP: Poly-adenylate 95.2 0.011 2.4E-07 49.9 2.1 50 8-60 22-71 (72)
110 PF14608 zf-CCCH_2: Zinc finge 95.2 0.0096 2.1E-07 37.9 1.3 19 194-214 1-19 (19)
111 PF08952 DUF1866: Domain of un 95.2 0.078 1.7E-06 50.6 7.7 77 345-427 21-106 (146)
112 smart00517 PolyA C-terminal do 95.1 0.019 4.2E-07 47.5 3.0 51 8-61 11-61 (64)
113 KOG4307 RNA binding protein RB 95.1 0.024 5.3E-07 64.7 4.8 81 349-430 432-516 (944)
114 KOG2314 Translation initiation 94.9 0.032 7E-07 62.6 4.9 59 368-426 80-142 (698)
115 KOG0112 Large RNA-binding prot 94.7 0.058 1.3E-06 63.3 6.7 85 347-434 451-537 (975)
116 KOG1456 Heterogeneous nuclear 94.7 0.13 2.8E-06 55.5 8.6 79 350-429 286-364 (494)
117 KOG3152 TBP-binding protein, a 94.4 0.02 4.4E-07 58.8 1.8 68 351-419 74-157 (278)
118 KOG1190 Polypyrimidine tract-b 94.1 0.11 2.3E-06 56.6 6.7 78 348-426 411-489 (492)
119 KOG2185 Predicted RNA-processi 93.8 0.025 5.3E-07 61.3 1.1 26 191-216 139-164 (486)
120 KOG2202 U2 snRNP splicing fact 93.7 0.029 6.2E-07 57.7 1.4 60 367-426 83-146 (260)
121 KOG4849 mRNA cleavage factor I 93.7 0.059 1.3E-06 57.6 3.6 74 353-427 82-161 (498)
122 KOG1677 CCCH-type Zn-finger pr 93.4 0.039 8.4E-07 58.1 1.8 27 188-214 173-200 (332)
123 KOG2891 Surface glycoprotein [ 93.2 0.096 2.1E-06 54.6 4.3 38 349-386 147-195 (445)
124 PF10309 DUF2414: Protein of u 92.6 0.51 1.1E-05 38.9 6.8 54 352-410 6-62 (62)
125 KOG1456 Heterogeneous nuclear 92.5 0.79 1.7E-05 49.7 9.9 79 350-429 119-200 (494)
126 KOG1996 mRNA splicing factor [ 92.5 0.3 6.6E-06 51.3 6.6 62 366-427 300-366 (378)
127 KOG1595 CCCH-type Zn-finger pr 90.8 0.19 4E-06 56.5 3.2 35 180-214 224-258 (528)
128 KOG0105 Alternative splicing f 90.8 1.1 2.4E-05 44.7 8.1 68 353-424 117-186 (241)
129 KOG0128 RNA-binding protein SA 89.9 0.04 8.7E-07 64.3 -3.0 72 353-425 669-744 (881)
130 KOG0128 RNA-binding protein SA 89.2 0.18 3.9E-06 59.1 1.5 76 351-427 736-814 (881)
131 KOG0112 Large RNA-binding prot 89.0 0.09 2E-06 61.8 -1.0 80 348-428 369-451 (975)
132 PF04847 Calcipressin: Calcipr 89.0 1.1 2.4E-05 44.4 6.7 62 365-428 8-71 (184)
133 PF15023 DUF4523: Protein of u 88.7 1.7 3.7E-05 41.7 7.4 73 347-424 82-158 (166)
134 KOG1365 RNA-binding protein Fu 88.5 0.69 1.5E-05 50.3 5.2 70 353-424 163-239 (508)
135 KOG4676 Splicing factor, argin 88.4 0.73 1.6E-05 50.2 5.3 75 353-429 9-90 (479)
136 KOG2193 IGF-II mRNA-binding pr 88.4 0.41 8.9E-06 52.5 3.5 80 352-434 2-82 (584)
137 KOG4285 Mitotic phosphoprotein 88.0 1.1 2.4E-05 47.4 6.2 63 365-430 209-272 (350)
138 KOG4307 RNA binding protein RB 87.7 1.5 3.3E-05 50.9 7.5 73 351-424 867-943 (944)
139 KOG2068 MOT2 transcription fac 86.1 0.31 6.7E-06 52.0 1.0 78 352-429 78-164 (327)
140 KOG1039 Predicted E3 ubiquitin 85.6 0.29 6.2E-06 52.8 0.5 23 193-215 9-31 (344)
141 KOG0115 RNA-binding protein p5 84.0 0.91 2E-05 47.1 3.2 74 352-426 32-112 (275)
142 KOG2416 Acinus (induces apopto 82.9 1.5 3.2E-05 50.1 4.5 78 347-427 440-521 (718)
143 KOG1365 RNA-binding protein Fu 81.0 1.8 3.8E-05 47.3 4.1 77 351-428 280-362 (508)
144 PF12872 OST-HTH: OST-HTH/LOTU 78.1 2.9 6.2E-05 34.2 3.7 67 243-323 2-71 (74)
145 PF10650 zf-C3H1: Putative zin 75.4 1.5 3.2E-05 29.5 1.0 19 194-213 2-21 (23)
146 KOG2494 C3H1-type Zn-finger pr 73.5 1.2 2.5E-05 47.6 0.3 23 192-214 37-60 (331)
147 KOG4210 Nuclear localization s 73.3 2.5 5.4E-05 44.5 2.6 79 350-429 87-169 (285)
148 PF08675 RNA_bind: RNA binding 72.9 14 0.0003 32.6 6.6 56 351-412 9-64 (87)
149 KOG1763 Uncharacterized conser 72.3 1.5 3.2E-05 46.3 0.6 22 193-214 93-114 (343)
150 KOG2253 U1 snRNP complex, subu 71.0 4.1 8.8E-05 47.1 3.8 75 345-425 34-108 (668)
151 KOG1040 Polyadenylation factor 69.7 2.2 4.8E-05 45.8 1.3 23 192-214 105-128 (325)
152 COG5084 YTH1 Cleavage and poly 69.7 2.1 4.6E-05 45.1 1.1 24 192-215 134-158 (285)
153 KOG1492 C3H1-type Zn-finger pr 69.3 2 4.2E-05 43.8 0.7 23 192-214 206-229 (377)
154 KOG1677 CCCH-type Zn-finger pr 60.4 3.9 8.5E-05 43.1 1.0 27 188-214 128-156 (332)
155 KOG2591 c-Mpl binding protein, 60.0 22 0.00047 40.8 6.6 67 351-421 174-245 (684)
156 KOG4574 RNA-binding protein (c 57.7 7.8 0.00017 46.2 2.8 81 346-429 293-375 (1007)
157 KOG4454 RNA binding protein (R 55.2 2.9 6.2E-05 42.8 -1.0 63 352-415 81-150 (267)
158 PF03467 Smg4_UPF3: Smg-4/UPF3 53.2 13 0.00029 36.4 3.3 66 351-417 7-82 (176)
159 PF03880 DbpA: DbpA RNA bindin 51.6 16 0.00035 30.5 3.1 59 362-425 11-74 (74)
160 COG5152 Uncharacterized conser 48.0 7.2 0.00016 39.3 0.5 24 191-214 140-164 (259)
161 KOG1040 Polyadenylation factor 45.0 9.6 0.00021 41.1 1.0 26 189-214 74-99 (325)
162 PF07576 BRAP2: BRCA1-associat 43.4 1.2E+02 0.0027 27.6 7.7 65 351-416 13-80 (110)
163 KOG2494 C3H1-type Zn-finger pr 39.7 13 0.00029 39.9 1.1 30 184-214 63-92 (331)
164 KOG1492 C3H1-type Zn-finger pr 37.3 15 0.00031 37.7 0.8 23 192-214 288-311 (377)
165 COG5252 Uncharacterized conser 36.9 13 0.00028 38.4 0.4 22 193-214 86-107 (299)
166 PF15513 DUF4651: Domain of un 33.0 66 0.0014 26.8 3.8 20 367-386 9-28 (62)
167 KOG0125 Ataxin 2-binding prote 31.7 20 0.00044 38.7 0.8 25 272-297 116-140 (376)
168 COG5063 CTH1 CCCH-type Zn-fing 30.6 26 0.00057 37.5 1.5 26 189-214 271-297 (351)
169 COG5084 YTH1 Cleavage and poly 27.8 29 0.00064 36.8 1.2 25 190-214 102-126 (285)
170 KOG2318 Uncharacterized conser 26.3 2.1E+02 0.0045 33.5 7.5 75 347-422 170-300 (650)
171 KOG0149 Predicted RNA-binding 23.5 30 0.00066 35.8 0.4 26 272-297 32-58 (247)
172 KOG1039 Predicted E3 ubiquitin 22.9 37 0.00081 36.9 1.0 26 189-214 246-273 (344)
173 KOG4019 Calcineurin-mediated s 22.4 49 0.0011 33.1 1.6 75 353-429 12-91 (193)
174 KOG4660 Protein Mei2, essentia 21.9 1.2E+02 0.0027 34.8 4.8 77 353-430 390-475 (549)
175 PF11415 Toxin_37: Antifungal 21.2 18 0.0004 26.7 -1.2 17 196-213 16-32 (35)
176 PF02714 DUF221: Domain of unk 21.1 84 0.0018 32.8 3.1 34 393-428 1-34 (325)
177 KOG1813 Predicted E3 ubiquitin 20.5 36 0.00079 36.3 0.3 26 189-214 183-209 (313)
178 PF11767 SET_assoc: Histone ly 20.1 5.2E+02 0.011 21.6 7.8 56 362-422 10-65 (66)
179 KOG2333 Uncharacterized conser 20.1 66 0.0014 36.8 2.1 28 189-216 112-139 (614)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=3.6e-15 Score=139.72 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|+.|++.||++.|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999 899999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
++.++...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99877553
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=3.3e-14 Score=147.45 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhc-CCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~m-n~~~i~Gr~V~Vk~Ak~ 427 (582)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+|+|||+|.+.++|+.|.++. |...|+|++|+|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34679999999 67999999999999999999999988 7889999999999999998876 66888999999999887
No 3
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2e-14 Score=142.76 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..|||||+| .|.++.|+|++||++||+|++..|+.| ++||||||||.+.++|.+|++. .+.+|+||+..|+.|.
T Consensus 12 ~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 459999999 899999999999999999999999997 8999999999999999999998 7789999999999876
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=7.7e-14 Score=145.18 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.++|||+|| ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|..|+..||+..|+||.|+|.++.
T Consensus 269 ~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 457999999 899999999999999999999999986 589999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
.|.+
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 8764
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=1.7e-13 Score=145.29 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcC--eEEEEe
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 423 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk 423 (582)
...+|||++| ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||+..++| +.|+|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3568999999 899999999999999999999999986 578999999999999999999999999977 789999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
+++++.+..
T Consensus 271 ~a~~~~~~~ 279 (346)
T TIGR01659 271 LAEEHGKAK 279 (346)
T ss_pred ECCcccccc
Confidence 998875543
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.3e-14 Score=151.82 Aligned_cols=152 Identities=22% Similarity=0.347 Sum_probs=105.1
Q ss_pred HHHhhcchhhhccccccccccCCCCccHHHHHHHhhhhhhhhcccCCCCCcchhhhhcccc---cccccCCCCCCCCCCC
Q 007997 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRCNLPHGQHSVILAEDVP---KYLEYSGEKSDPGGIV 348 (582)
Q Consensus 272 yfekygk~l~~~~~~~~sqr~g~~Gysl~klL~~l~~~i~~idR~~~p~gq~av~l~Eda~---K~~~~r~dr~d~~~~~ 348 (582)
+||+||.+..+..+++++++ ..+||=+.++-.+- ...+.+.- .|.+- ++-++..+ ||.+...+| .
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~A---lhn~k-tlpG~~~pvqvk~Ad~E~er------~ 121 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINA---LHNQK-TLPGMHHPVQVKYADGERER------I 121 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHH---hhccc-ccCCCCcceeecccchhhhc------c
Confidence 89999999998777777665 45565222221110 11111111 12111 11122222 333221111 2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCc-eE--cCeEEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPH-FV--CGARVLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~-~i--~Gr~V~V 422 (582)
...+|||||-| +..+||.+|+++|++||.|++|+|.+| .+||||||+|.+.|.|..|++.||+. .+ |...+.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 56789999999 899999999999999999999999996 79999999999999999999999984 34 5688999
Q ss_pred eeccccccchhhhh
Q 007997 423 KPYREKSRLVDRKY 436 (582)
Q Consensus 423 k~Ak~K~k~~~r~~ 436 (582)
+||.+++.+..+..
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99999876665543
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.47 E-value=1.9e-13 Score=153.48 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| +.++++++|+++|+.||+|++|+|++| ++||||||+|.+.++|..|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 899999999999999999999999986 58999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8654
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.5e-13 Score=141.84 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....++|+|.|| ++.+.|.||+..|++||+|.+|.|+.. .+||||||||++.++|++|-+++++..|.||+|.|+.|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344679999999 899999999999999999999999995 68999999999999999999999999999999999999
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 9873
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=4.4e-13 Score=139.54 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 3 ~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 569999999 899999999999999999999999986 588999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++..
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7653
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4.4e-13 Score=106.83 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 354 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 354 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
|||+|| ++++|+++|+++|++||+|..+.+..+ +.+|||||+|.+.++|+.|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 899999999999999999999999884 6799999999999999999999999999999985
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=6.9e-13 Score=143.30 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.+..++|||+|| +..+|+++|+++|++||+|..|.|+++ +++|||||+|.+.++|..|++.||+..|.|+.|+|.
T Consensus 183 ~p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 183 IPNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 345789999999 899999999999999999999999975 578999999999999999999999999999999999
Q ss_pred eccc
Q 007997 424 PYRE 427 (582)
Q Consensus 424 ~Ak~ 427 (582)
++..
T Consensus 262 ~a~~ 265 (457)
T TIGR01622 262 YAQD 265 (457)
T ss_pred EccC
Confidence 9874
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=7.2e-13 Score=147.42 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....+|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|.+|+..||+..|+|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568999999 899999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccccchh
Q 007997 426 REKSRLVD 433 (582)
Q Consensus 426 k~K~k~~~ 433 (582)
..|.....
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 98765443
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.1e-12 Score=139.12 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 345679999999 899999999999999999999999986 678999999999999999999999999999999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987654
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=132.62 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccC-CCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~-sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.|+ .+|||||+|.++++|+.|+. ||+..|+|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 8999999999999999999999999974 78999999999999999995 8999999999999997643
No 15
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.38 E-value=2.3e-13 Score=147.86 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=121.9
Q ss_pred hHHHhhcchhhhcccccc-ccccCCCCccHHHHHHHhhhhhhhhcccCCCCCcchhhhhccccccccc-CCCCCCC-CCC
Q 007997 271 MYYEKYGKTLQAEGYLTE-SQRHGKAGYSLTKLLARLKNSIRLIDRCNLPHGQHSVILAEDVPKYLEY-SGEKSDP-GGI 347 (582)
Q Consensus 271 ~yfekygk~l~~~~~~~~-sqr~g~~Gysl~klL~~l~~~i~~idR~~~p~gq~av~l~Eda~K~~~~-r~dr~d~-~~~ 347 (582)
-||...|++.++..+.+. +++.++.+|..-...+.+...| -.+|++..|+..++...+++|.... .....+. +..
T Consensus 198 efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai--aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~ 275 (549)
T KOG0147|consen 198 EFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI--ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFT 275 (549)
T ss_pred HHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh--hhcCCcccCceeEecccHHHHHHHHhccccccccccc
Confidence 388889999999777777 7888888985333323332222 2345678899988888888766521 1111121 223
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
+|-.+ +||||| ++++||++|+.+|+.||.|+.|.+++| ++||||||+|.+.+.|++|++.||+..|.||.|+|.
T Consensus 276 ~p~~r-l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~ 353 (549)
T KOG0147|consen 276 GPMRR-LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVS 353 (549)
T ss_pred cchhh-hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEE
Confidence 33344 999999 999999999999999999999999986 799999999999999999999999999999999999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
...++-+..
T Consensus 354 ~v~~r~~~~ 362 (549)
T KOG0147|consen 354 VVTERVDTK 362 (549)
T ss_pred Eeeeecccc
Confidence 887775543
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.8e-12 Score=127.48 Aligned_cols=85 Identities=24% Similarity=0.297 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 345 GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 345 ~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....+.+.+||||++ ..-+||+++|+.|+.||+|.+|||-+ -+||+||.|++.|.|..||..||+..|.|..|+|.|
T Consensus 158 NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred ccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 344577889999999 56799999999999999999999998 689999999999999999999999999999999999
Q ss_pred ccccccch
Q 007997 425 YREKSRLV 432 (582)
Q Consensus 425 Ak~K~k~~ 432 (582)
-++.....
T Consensus 235 GKe~~~~~ 242 (321)
T KOG0148|consen 235 GKEGDDGI 242 (321)
T ss_pred cccCCCCC
Confidence 88765433
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=1.3e-11 Score=137.37 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEc----CeEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 420 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~----Gr~V 420 (582)
....++|||+|| ++++|+++|+++|++||+|.+|.|+.+ ++||||||+|.+.++|.+|++.+++..|. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 344678999999 899999999999999999999999885 67999999999999999999999999999 9999
Q ss_pred EEeeccccccc
Q 007997 421 LVKPYREKSRL 431 (582)
Q Consensus 421 ~Vk~Ak~K~k~ 431 (582)
.|.++..+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99999887654
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=4.3e-12 Score=136.31 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCH--HHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~--e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
.-+|||||| .+.+|+++|+..|+.||.|.+|.|++...||||||+|... .++.+|++.||+..+.||.|+|..|++.
T Consensus 10 gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 459999999 9999999999999999999999999977799999999987 7899999999999999999999999874
No 19
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.1e-11 Score=126.92 Aligned_cols=86 Identities=19% Similarity=0.408 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 342 SDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 342 ~d~~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
.+..+.+.+.+||||+.| +++++|..|+++|+.||+|..|+|++| ++||||||+|+++-++..|++...+..|+|
T Consensus 92 ~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 445677788999999999 999999999999999999999999996 899999999999999999999999999999
Q ss_pred eEEEEeecccc
Q 007997 418 ARVLVKPYREK 428 (582)
Q Consensus 418 r~V~Vk~Ak~K 428 (582)
++|.|..-..+
T Consensus 171 rri~VDvERgR 181 (335)
T KOG0113|consen 171 RRILVDVERGR 181 (335)
T ss_pred cEEEEEecccc
Confidence 99999875544
No 20
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.4e-12 Score=127.14 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..||||||+| ...+||.-|...|-.||.|.+|.||.| ++||||||+|...|+|.+|+..||...++||.|+|+.|
T Consensus 9 ~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4679999999 688999999999999999999999996 89999999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+|..-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98643
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=3.3e-11 Score=94.01 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
+|||++| +..+++++|+++|.+||+|.++++..+ .++|+|||+|.+.+.|+.|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 889999999999999999999999884 367999999999999999999999999999999874
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=2.1e-11 Score=98.63 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=61.0
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 354 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 354 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
|||+|| ++++++++|+++|+.||.|.+|++.++ +.+|+|||+|.+.++|+.|++..++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999999985 3589999999999999999999988999999885
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.8e-11 Score=137.60 Aligned_cols=77 Identities=18% Similarity=0.360 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++||||+| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|+.|++.||+..|+||.|+|.+.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3469999999 899999999999999999999999986 68999999999999999999999999999999999865
Q ss_pred cc
Q 007997 426 RE 427 (582)
Q Consensus 426 k~ 427 (582)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 24
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.3e-11 Score=121.31 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
...+|||+|| ++.+||++|+++|+.||+|++|+|++| +.+|||||+|.+++.|+.|+. |++..|.++.|.|..+..
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 3469999999 999999999999999999999999997 677899999999999999995 699999999999988764
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2e-11 Score=123.60 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.--+|||.| ...++.|+||+.|.+||+|.+++|++| ++||||||.|-+.++|+.|+..||++.|++|.|+-+||.
T Consensus 62 hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 347999999 889999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccccchh
Q 007997 427 EKSRLVD 433 (582)
Q Consensus 427 ~K~k~~~ 433 (582)
.|.....
T Consensus 141 RKp~e~n 147 (321)
T KOG0148|consen 141 RKPSEMN 147 (321)
T ss_pred cCccccC
Confidence 8874433
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.5e-11 Score=115.48 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 430 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~k 430 (582)
..+|||||| ...+++.+|...|+.||+|..|.|.. ...|||||+|+++.+|..|+..|++..|||.+|+|....-+..
T Consensus 10 ~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 579999999 89999999999999999999999987 6899999999999999999999999999999999998776544
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=6.9e-11 Score=113.09 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|||+|| ++++|+++|+++|.+||+|..|+|+.| ++||||||+|.+.+.|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 899999999999999999999999886 689999999999999999999999999999999999976
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=9.6e-11 Score=90.91 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.6
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 356 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 356 Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
|++| ++.+++++|+++|++||+|..+.|..+ +++|+|||+|.+.++|..|++.+++..++|+.|+|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 889999999999999999999999885 348999999999999999999999999999999874
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.4e-11 Score=117.77 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...+|-|.|| +.+++|++|+++|.+||.|..|.|.+| .+||||||+|.+.++|.+|++.||++-+++-.++|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4569999999 899999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=1.8e-11 Score=128.01 Aligned_cols=84 Identities=32% Similarity=0.458 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+++||||+| +.+++|+++++||.+||.|.++.|++| +.||||||+|..++.+++++.. ..|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 5789999999 899999999999999999999999997 7899999999999999999988 899999999999999
Q ss_pred cccccchhhh
Q 007997 426 REKSRLVDRK 435 (582)
Q Consensus 426 k~K~k~~~r~ 435 (582)
.+|......+
T Consensus 174 ~pk~~~~~~~ 183 (311)
T KOG4205|consen 174 IPKEVMQSTK 183 (311)
T ss_pred cchhhccccc
Confidence 9998766443
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.18 E-value=1.1e-10 Score=127.67 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|..+.|+++ +++|||||+|.+.+.|..|++.||+..|+|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999 899999999999999999999999885 5899999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+....
T Consensus 372 a~~~~ 376 (509)
T TIGR01642 372 ACVGA 376 (509)
T ss_pred CccCC
Confidence 87543
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=3e-11 Score=118.58 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|-|-|| .+.+|.++|+.+|++||.|-+|.|+.| ++||||||-|.+..+|+.|+++|++..|+|+.|.|..|+
T Consensus 13 m~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 458999999 899999999999999999999999998 689999999999999999999999999999999998877
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.16 E-value=1.3e-10 Score=127.97 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 348 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.+.+.+|||+|| ++ .+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 346789999999 65 7999999999999999999999986 57999999999999999999999999999999999987
Q ss_pred ccc
Q 007997 427 EKS 429 (582)
Q Consensus 427 ~K~ 429 (582)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 653
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.4e-10 Score=127.77 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHh--cCCceEcCeEEEEeeccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~--mn~~~i~Gr~V~Vk~Ak~ 427 (582)
++++|||++| ++++||++|+++|++||+|.+|.|++ +||||||+|.+.++|++|++. +++..|+|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 3689999999 89999999999999999999999997 789999999999999999986 478999999999999876
Q ss_pred c
Q 007997 428 K 428 (582)
Q Consensus 428 K 428 (582)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 5
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.5e-10 Score=129.85 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC--CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqF--G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
...++|||+|| ++++||++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 8999999999999999 999999885 5799999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 427 EKSRL 431 (582)
Q Consensus 427 ~K~k~ 431 (582)
++.+.
T Consensus 306 p~~~~ 310 (578)
T TIGR01648 306 PVDKK 310 (578)
T ss_pred CCCcc
Confidence 86543
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.13 E-value=1.7e-10 Score=124.77 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+++++|+++|++||+|.+|+|+.| ++||||||+|.+.++|.+|+. |++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 899999999999999999999999986 579999999999999999997 699999999999988
Q ss_pred cccc
Q 007997 425 YREK 428 (582)
Q Consensus 425 Ak~K 428 (582)
...+
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6654
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=4.3e-10 Score=88.13 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccC---CCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ---KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~---sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+|||++| ++.+++++|+++|+.||+|..+.+..+. .+|+|||+|.+.+.|+.|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8889999999999999999999998853 589999999999999999999999999999999864
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.11 E-value=3.1e-10 Score=88.84 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 369 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 369 Lr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
|+++|++||+|.+|.+..++ +|+|||+|.+.++|+.|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999985
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=2.2e-10 Score=128.53 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~A 425 (582)
...+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|+.|++.||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4579999999 899999999999999999999999986 78999999999999999999999998885 788888766
Q ss_pred cc
Q 007997 426 RE 427 (582)
Q Consensus 426 k~ 427 (582)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 54
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.08 E-value=1.5e-10 Score=111.71 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..|||||+| +..++++.|.++|-+.|+|++++|++| ..+|||||+|.++|+|+-|++.||...+.||+|+|+.+.
T Consensus 9 d~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 459999999 899999999999999999999999997 589999999999999999999999999999999999988
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1e-09 Score=119.68 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
..+|.|.|| +|.+.+.+|+.+|++||.|.+|.||+. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 569999999 999999999999999999999999983 5569999999999999999999999999999999999999
Q ss_pred cccchh
Q 007997 428 KSRLVD 433 (582)
Q Consensus 428 K~k~~~ 433 (582)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 876554
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=3e-10 Score=118.92 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...|||||+| .|.+++|.|++||++||+|.+|.|++| ++|||+||+|++++.+.+++.. ..|.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5679999999 999999999999999999999999997 8999999999999999999987 789999999999999
Q ss_pred cccccch
Q 007997 426 REKSRLV 432 (582)
Q Consensus 426 k~K~k~~ 432 (582)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9886543
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.97 E-value=1.5e-09 Score=118.15 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=76.7
Q ss_pred CCCCC-CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 347 IVAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 347 ~~~~~-rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
..+.. +.||||++ +++++|++|..+|+..|+|.++++++| +.|||||++|.+.+++..|++.+|+..+.||+++
T Consensus 13 ~~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~ 91 (435)
T KOG0108|consen 13 NSPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLR 91 (435)
T ss_pred cCcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEE
Confidence 33444 89999999 899999999999999999999999997 7899999999999999999999999999999999
Q ss_pred Eeecccccc
Q 007997 422 VKPYREKSR 430 (582)
Q Consensus 422 Vk~Ak~K~k 430 (582)
|.|+.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999887654
No 44
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.6e-09 Score=87.86 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.2
Q ss_pred HHHHHHHhh----cCCCEeEEE-eecc------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 366 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 366 EedLr~~Fs----qFG~V~~Vr-I~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
+++|+++|+ +||+|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999995 5442 47999999999999999999999999999999987
No 45
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1.7e-10 Score=111.46 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
..+-.||||+| ++++||.||-.+|++||+|++|.+++| +++||||..|++..+.-.|+..+|+..|.||.|+|..
T Consensus 33 kdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 44569999999 999999999999999999999999997 7999999999999999999999999999999999975
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=4.4e-09 Score=93.85 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
.++-|||.|| ++++|.|+.-++|++||+|..|||=.. .-||-|||.|++..+|++|++.|++..++++-+.|-.+.+.
T Consensus 17 vnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4789999999 899999999999999999999999654 67999999999999999999999999999999999988765
Q ss_pred c
Q 007997 429 S 429 (582)
Q Consensus 429 ~ 429 (582)
.
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.8e-09 Score=111.75 Aligned_cols=137 Identities=18% Similarity=0.320 Sum_probs=102.2
Q ss_pred HHhhcchhhhcccccc-ccccCCCCcc-----HHHHHHHhh-hhhhhhcc-------cCCCCCcchh-hhhccccccccc
Q 007997 273 YEKYGKTLQAEGYLTE-SQRHGKAGYS-----LTKLLARLK-NSIRLIDR-------CNLPHGQHSV-ILAEDVPKYLEY 337 (582)
Q Consensus 273 fekygk~l~~~~~~~~-sqr~g~~Gys-----l~klL~~l~-~~i~~idR-------~~~p~gq~av-~l~Eda~K~~~~ 337 (582)
|+-||.+..-++.|++ ++.|+++.|. ....|..-. |..-+=+| ...|..|+.+ ++.|++.+|.
T Consensus 134 F~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fn-- 211 (544)
T KOG0124|consen 134 FDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFN-- 211 (544)
T ss_pred ccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhh--
Confidence 5567888777888888 7778777652 111222110 11111111 1114555533 4467776666
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCc
Q 007997 338 SGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH 413 (582)
Q Consensus 338 r~dr~d~~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~ 413 (582)
+|||..+ +.+++|+||+..|+.||+|..|.+.++ .+||||||+|.+..+...|+..||-.
T Consensus 212 ---------------RiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 212 ---------------RIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF 275 (544)
T ss_pred ---------------eEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchh
Confidence 8999999 899999999999999999999999885 78999999999999999999999999
Q ss_pred eEcCeEEEEeeccc
Q 007997 414 FVCGARVLVKPYRE 427 (582)
Q Consensus 414 ~i~Gr~V~Vk~Ak~ 427 (582)
.++|.-++|..+..
T Consensus 276 DLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 276 DLGGQYLRVGKCVT 289 (544)
T ss_pred hcccceEecccccC
Confidence 99999999976554
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=7.9e-10 Score=115.76 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+||||.+ .+.+.|+.||..|..||+|..|.+..| ++||||||+|+-+|.|+.|++.||+.+++||.|+|..-
T Consensus 114 cRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred Hheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 37999999 999999999999999999999999886 89999999999999999999999999999999999853
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=2.5e-09 Score=98.48 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
..+.||||||| ++-+|||+|.++|++.|+|..|.+=.| ..-||.||.|-..++|..|+.-+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45679999999 999999999999999999999877666 4579999999999999999999999999999999987
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
-.
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 43
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.2e-09 Score=113.74 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.....+-|||.|| ..++|||.|++.|++||.|++|..++| ||||.|.+.++|.+|++.||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4456789999999 899999999999999999999999865 99999999999999999999999999999999999
Q ss_pred ccccch
Q 007997 427 EKSRLV 432 (582)
Q Consensus 427 ~K~k~~ 432 (582)
|-.+..
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 865443
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.89 E-value=1e-09 Score=112.41 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
...+.||+|||| ..+++..+||..|++||+|.+|.|+ |+|+||.|+..++|..|+..|++..++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 346779999999 8999999999999999999999997 57999999999999999999999999999999998776
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
+-
T Consensus 150 rl 151 (346)
T KOG0109|consen 150 RL 151 (346)
T ss_pred cc
Confidence 53
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=5.9e-09 Score=111.68 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceE-cCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i-~Gr~V~Vk 423 (582)
+.-..||||.| +.++.|++|.-+|++-|+|-++||++| .+||||||||.+.+.|+.|++.+|++.| -|+.|.|.
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 45679999999 899999999999999999999999997 7899999999999999999999999977 68888887
Q ss_pred ecc
Q 007997 424 PYR 426 (582)
Q Consensus 424 ~Ak 426 (582)
...
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 544
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.84 E-value=7.2e-09 Score=100.30 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~V-rI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....|||||| +..++|..|.+.|+.||.+... .|++| .++|||||.|.+.|.+.+|++.||++.+++|+|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 33479999999 7799999999999999998764 45553 789999999999999999999999999999999999
Q ss_pred eccccccchhh
Q 007997 424 PYREKSRLVDR 434 (582)
Q Consensus 424 ~Ak~K~k~~~r 434 (582)
.+..+....++
T Consensus 173 ya~k~~~kg~~ 183 (203)
T KOG0131|consen 173 YAFKKDTKGER 183 (203)
T ss_pred EEEecCCCccc
Confidence 99988765533
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=9.7e-09 Score=112.54 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcC------------CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqF------------G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
....++|||||| ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++..|
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345689999999 8999999999999975 4666776665 79999999999999999994 899999
Q ss_pred cCeEEEEeeccc
Q 007997 416 CGARVLVKPYRE 427 (582)
Q Consensus 416 ~Gr~V~Vk~Ak~ 427 (582)
.|+.|+|.....
T Consensus 248 ~g~~l~v~r~~~ 259 (509)
T TIGR01642 248 SNVFLKIRRPHD 259 (509)
T ss_pred eCceeEecCccc
Confidence 999999976443
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=7e-09 Score=116.81 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 429 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~ 429 (582)
.++|||||+| +..++|.||+..|+.||+|+.|.++. .||+|||+..+..+|.+|+.+|+++.+.++.|+|.||..++
T Consensus 420 ~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 4789999999 89999999999999999999999988 99999999999999999999999999999999999999988
Q ss_pred cch
Q 007997 430 RLV 432 (582)
Q Consensus 430 k~~ 432 (582)
-..
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 655
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.8e-08 Score=107.64 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhc-----CC-ceEcCeEEE
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 421 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~m-----n~-~~i~Gr~V~ 421 (582)
++|||.|| ++++||+.|..+|++||+|..+.|+.+ +++|.|||.|.+..+++.+|+.. .+ ..|+||.++
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 999999999999999999999999885 79999999999999999999975 23 789999999
Q ss_pred Eeeccccccch
Q 007997 422 VKPYREKSRLV 432 (582)
Q Consensus 422 Vk~Ak~K~k~~ 432 (582)
|..|..+....
T Consensus 372 v~~Av~RkeA~ 382 (678)
T KOG0127|consen 372 VTLAVTRKEAA 382 (678)
T ss_pred eeeccchHHHH
Confidence 99999886544
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=6.7e-09 Score=106.45 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 431 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~k~ 431 (582)
.||||||| +..+++.+|+.+|++||+|.+|.|+ |.||||..++...++.|+..|++..|+|..|+|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 48999999 8899999999999999999999998 459999999999999999999999999999999999988554
Q ss_pred hh
Q 007997 432 VD 433 (582)
Q Consensus 432 ~~ 433 (582)
..
T Consensus 78 st 79 (346)
T KOG0109|consen 78 ST 79 (346)
T ss_pred cc
Confidence 43
No 58
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=8.1e-09 Score=95.94 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
.-|||+++ +...||++|.+.|..||+|..+.+-.| -.||||.|.|++.+.|++|++.+|+..|-|..|.|.|+--
T Consensus 73 wIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 73 WIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred EEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 47999999 899999999999999999999999887 4699999999999999999999999999999999999887
Q ss_pred ccc
Q 007997 428 KSR 430 (582)
Q Consensus 428 K~k 430 (582)
++.
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 664
No 59
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.3e-08 Score=108.72 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceE---cCeEEEEe
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLVK 423 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i---~Gr~V~Vk 423 (582)
.-|+|||.+ +..++|.|||.+|++||.|.+|.|++| .+|||+||+|.+.++|.+|+.++++.+. ....|.|+
T Consensus 34 ~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 34 AVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 449999999 899999999999999999999999998 5899999999999999999999866544 45789999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+|....++
T Consensus 113 ~Ad~E~er 120 (510)
T KOG0144|consen 113 YADGERER 120 (510)
T ss_pred ccchhhhc
Confidence 98866554
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.3e-08 Score=97.12 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
..+++|||||| +.++.|.+|+++|.+||.|.+|.+-.- ....||||.|+++.+|+.|+..-++..++|.+++|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 45679999999 889999999999999999999988442 3467999999999999999999999999999999998775
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 43
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3.7e-08 Score=99.81 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
-..|||-|| ..+.+|.-|+.+|++||.|..|+|++| ++||||||+..+-++|..|+..+|+..+.+|.+.|.+..
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 358999999 888999999999999999999999997 899999999999999999999999999999999998755
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 62
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.72 E-value=3e-08 Score=98.64 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHH----HhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 350 GSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~----~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.+.||||-|| ...+..++|++ +|++||+|.+|....- +.||=|||+|.+.+.|-.|+.+|+|..+.|+.++|.+
T Consensus 8 pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3449999999 78899999998 9999999999988764 7899999999999999999999999999999999999
Q ss_pred ccccccchhhh
Q 007997 425 YREKSRLVDRK 435 (582)
Q Consensus 425 Ak~K~k~~~r~ 435 (582)
|+.+.....+.
T Consensus 87 A~s~sdii~~~ 97 (221)
T KOG4206|consen 87 AKSDSDIIAQA 97 (221)
T ss_pred ccCccchhhcc
Confidence 99988766553
No 63
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=9.7e-08 Score=96.84 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....|.|.-| +..+|+|+||.+|+..|+|+.|++++| ++-|||||.|.++++|++|+..+|+..+..+.|+|.+|
T Consensus 40 skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3446777888 899999999999999999999999997 68899999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
+|-...
T Consensus 119 RPSs~~ 124 (360)
T KOG0145|consen 119 RPSSDS 124 (360)
T ss_pred cCChhh
Confidence 986543
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.1e-07 Score=102.21 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccccc
Q 007997 354 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 431 (582)
Q Consensus 354 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~k~ 431 (582)
|||-|| +.+++..+|.+.|+.||+|+.|++..+ .+||| ||.|++++.|++|++.||+..+.|+.|.|..+..+.++
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 899999999999999999999999996 68999 99999999999999999999999999999988876553
Q ss_pred h
Q 007997 432 V 432 (582)
Q Consensus 432 ~ 432 (582)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 3
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=9.8e-08 Score=97.11 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCc-eEcC--eEEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPH-FVCG--ARVLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~-~i~G--r~V~V 422 (582)
...||||||-| ...-.||||+++|..||+|++|.+.++ .+||||||.|.+.-+|+.||..+++. .+-| ..+.|
T Consensus 17 ~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 36789999999 888999999999999999999999984 79999999999999999999998763 3333 56788
Q ss_pred eeccccccchhhh
Q 007997 423 KPYREKSRLVDRK 435 (582)
Q Consensus 423 k~Ak~K~k~~~r~ 435 (582)
|++...+++..|+
T Consensus 96 K~ADTdkER~lRR 108 (371)
T KOG0146|consen 96 KFADTDKERTLRR 108 (371)
T ss_pred EeccchHHHHHHH
Confidence 9888776666554
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.50 E-value=3.4e-07 Score=98.18 Aligned_cols=77 Identities=27% Similarity=0.313 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...|.+||+|| ++++.-.+|+++|. +-|+|+.|.+..| +.||+|.|+|+++|.+++|++.||.+.+.||.++||-
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567999999 89999999999996 5999999999997 8999999999999999999999999999999999985
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
-.
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 43
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=2.6e-07 Score=91.10 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcC-CCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqF-G~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..-+||..+ +.-+.|..+..||.+| |.|..+++.+. .+||||||.|++++.|+-|.+.||+..+.|+.+.|..-
T Consensus 49 ~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 447899999 7889999999999998 88889999773 79999999999999999999999999999999999887
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 766
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-07 Score=96.64 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccC----CCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~----sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...|+..-|||-.| ..-+|.+||.-+|+.||+|..|.|++|+ +-.||||.|++.++++.|+-+|.+..|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45677889999999 7778999999999999999999999984 566999999999999999999999999999999
Q ss_pred Eeeccc
Q 007997 422 VKPYRE 427 (582)
Q Consensus 422 Vk~Ak~ 427 (582)
|.+...
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 986543
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.3e-07 Score=98.51 Aligned_cols=79 Identities=22% Similarity=0.445 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.....|||.|+ +..++.+.|+++|+.||+|..++|+.+ +++|||||.|.+.++|..|+..||+..+.++.+.|.++
T Consensus 268 ~~~~nl~vknl-d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 268 LQGANLYVKNL-DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred ccccccccccC-ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 44669999999 899999999999999999999999884 89999999999999999999999999999999999998
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
..+
T Consensus 347 qr~ 349 (369)
T KOG0123|consen 347 QRK 349 (369)
T ss_pred hhh
Confidence 844
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.1e-07 Score=93.56 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.+|.-..|||-.| +-++.+.+|-..|-.||.|+..+|-.| ++|-||||.|+++.+|+.||..||+..|+-++++|
T Consensus 281 eGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 281 EGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred cCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 4567789999999 889999999999999999999888776 79999999999999999999999999999999999
Q ss_pred eecccccc
Q 007997 423 KPYREKSR 430 (582)
Q Consensus 423 k~Ak~K~k 430 (582)
...++|..
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 98777754
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=9.2e-07 Score=99.49 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.3
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
+|||.|| .|++|.+++..+|..+|.|..+.|..- .+.|||||.|.+.++|++|+..|+++.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3999999 999999999999999999999999873 24599999999999999999999999999999999998
Q ss_pred c
Q 007997 426 R 426 (582)
Q Consensus 426 k 426 (582)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 72
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=4.2e-07 Score=90.47 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.+..+||||+++ ...++||-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++..+..|++.||+..+.++.+.|+.
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 455789999999 899999999999999999999999885 445 999999999999999999999999999999987
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
-.-..
T Consensus 84 r~G~s 88 (267)
T KOG4454|consen 84 RCGNS 88 (267)
T ss_pred ccCCC
Confidence 66543
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.19 E-value=2.3e-06 Score=94.17 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.+.|||.+| ...+...||+++|++||+|+-..|+.. ..|-|||||+.+.+.|.++|+.|+...|.||.|-|..++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 568999999 888888999999999999999999985 457899999999999999999999999999999998877
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=1.5e-06 Score=97.92 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|.|.|| ++..+-.+|+.+|+.||.|.+|+|+.. .+||||||+|.++..|.+|+.++..+-+.||++.+.||+
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 459999999 899999999999999999999999983 579999999999999999999999999999999999999
Q ss_pred ccccch
Q 007997 427 EKSRLV 432 (582)
Q Consensus 427 ~K~k~~ 432 (582)
......
T Consensus 692 ~d~~~e 697 (725)
T KOG0110|consen 692 SDNTME 697 (725)
T ss_pred cchHHH
Confidence 876533
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.13 E-value=5.8e-06 Score=90.09 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=66.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
.+|||++| +.++++.+|+++|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+--+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 35999999 89999999999999999999999866 34448999999999999999999 79999999999986555
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.11 E-value=7.3e-06 Score=92.31 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec-------cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-------QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 420 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-------D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V 420 (582)
.|.+..+||||| +..++|+.|-..|+.||+|..|+|+. ++.+-+|||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 467889999999 88999999999999999999999987 2678899999999999999999999999999999
Q ss_pred EEeeccc
Q 007997 421 LVKPYRE 427 (582)
Q Consensus 421 ~Vk~Ak~ 427 (582)
++.|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=5.7e-06 Score=82.86 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
.++|||++ ++...+.+|..+|..||.|.+|.+ ..|||||.|.+.-+|..|+-.+|+.+|+|-++.|.++..+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 37999999 899999999999999999999977 5789999999999999999999999999999888888753
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.91 E-value=2.7e-05 Score=79.39 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....+|+|.|| ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|..|++.+++.-++|+.+++...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34569999999 999999999999999999999999997 67899999999999999999999999999999998776
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.90 E-value=2.1e-05 Score=84.76 Aligned_cols=73 Identities=22% Similarity=0.136 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec-cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+...+|||.|| ++++|-..||+-|..||.|..+.|+. .++|| .|.|.++++|+.|+..|++..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34568999999 89999999999999999999999965 35665 9999999999999999999999999999976
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.87 E-value=1.7e-05 Score=80.50 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...+.+|||++ ++.+|-+++..+|+.||.|..|.|++| +.|||+||.|.+.+.+..||. |++..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45679999999 998998889999999999999999997 578999999999999999999 899999999999988
Q ss_pred cccc
Q 007997 425 YREK 428 (582)
Q Consensus 425 Ak~K 428 (582)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 81
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.74 E-value=8.2e-05 Score=81.03 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+....+.+-+.-.+..--|-++|..+|.+||+|+.|.|-+ +---|.|||.+..+|-.|... .+-.|+||.|+|.|.
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 34444555555555333446789999999999999999977 445699999999999888777 889999999999998
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
++-+
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=3e-05 Score=85.68 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
..+.++|+|-+| +.++++++|+.+|+.||+|.+|+.-. .++|-.||.|-+.-+|+.|++++|...|.|++++
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456789999999 89999999999999999999987754 4799999999999999999999999999999999
No 83
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.54 E-value=6.2e-05 Score=76.64 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..-+||-|-| .-+++.+.|.+.|.+|=.-...++++| +++|||||.|.+..++..|+.+||+..++.|.|+....
T Consensus 189 ~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3459999999 778999999999999999888899986 79999999999999999999999999999999988654
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
..|
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 444
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.48 E-value=0.00041 Score=74.69 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 429 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~ 429 (582)
+..|.|.+|.+..+|.+.|-.+|+-||.|.+|.|.+.+ +--|.|.+.+...|+.|++.|+++.|.|++|+|...+-..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 67999999988999999999999999999999999854 4789999999999999999999999999999999877543
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.32 E-value=4.9e-05 Score=52.19 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.2
Q ss_pred ceecccccc-ccCCCCCCCccccC
Q 007997 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 468999888 99999999999998
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.30 E-value=0.00097 Score=67.15 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec-c----CCCceEEEEECCHHHHHHHHHhcCCceE---cCeEEE
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVL 421 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i---~Gr~V~ 421 (582)
..|||||.+| +.++...+|..+|..|---+-+.|-+ + -.+-+|||+|.+...|.+|+..+||..+ ++..++
T Consensus 33 ~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 4689999999 88999999999999986666655543 2 2346999999999999999999999998 578999
Q ss_pred Eeeccccccchhhhh
Q 007997 422 VKPYREKSRLVDRKY 436 (582)
Q Consensus 422 Vk~Ak~K~k~~~r~~ 436 (582)
+..|+...+...++.
T Consensus 112 iElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKG 126 (284)
T ss_pred eeehhcCcccccCCC
Confidence 999998777655443
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.21 E-value=0.0011 Score=72.89 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
+...-|-+.+| +|++|+++|.++|+-++ |+.+.+++. +..|=|||+|.++|+++.|+++ +...+..|-|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34456778899 99999999999999996 788888884 8899999999999999999999 8899999999998876
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
.+
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 54
No 88
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.00035 Score=70.20 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=60.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...+.|.++ ...+...+|+++|.+||++..+.+ .+++|||.|...++|+.|++.+++..+.|+.|.|..
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 447778888 677888999999999999966555 588999999999999999999999999999999943
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=73.72 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=126.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....+|||++| +..+++.++++....||++...+++.| .++||||..|.+......|++.+|+..+.++.+.|..
T Consensus 287 ~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34569999999 889999999999999999999988885 6899999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhcCCCCCCCCCCCCCc---cccc-------cccccccHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 007997 425 YREKSRLVDRKYVEKMQHPMFCSLHFTDGDT---ELHT-------MPRACNNSRLLRKQLMEEHEQAIELERRRLSEMQL 494 (582)
Q Consensus 425 Ak~K~k~~~r~~~~~~~~~~~~sp~~~~~d~---~l~~-------~~R~~~ne~mlrkk~~Ee~~q~lE~qrrrl~~~ql 494 (582)
|.........-.. ...+ .+...+. .... +-.+.. +.-|+ ..++-+.-+|.-|.+..+--.
T Consensus 366 A~~g~~~~~~~~~------~~~~-~~~~i~~~~~q~~g~~t~Vl~L~n~Vt-~deLk--dd~EyeeIlEdvr~ec~k~g~ 435 (500)
T KOG0120|consen 366 AIVGASNANVNFN------ISQS-QVPGIPLLMTQMAGIPTEVLCLTNVVT-PDELK--DDEEYEEILEDVRTECAKFGA 435 (500)
T ss_pred hhccchhccccCC------cccc-ccccchhhhcccCCCcchhhhhhhcCC-HHHhc--chHHHHHHHHHHHHHhcccCc
Confidence 8876543322111 0000 0000110 0000 011122 22222 445667888888888887666
Q ss_pred cCC-CCCCCCCCCcCccccccccCCCCCCCCCchhhhhhhhhhccCCCCCcccccccCCCCCcccc
Q 007997 495 ACK-PMNHHSYFGYSMDELQVSEAPAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHISTHYNDQDS 559 (582)
Q Consensus 495 ~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~d~ 559 (582)
..+ -++++.+.+.+.-+. .-=+.||-+.+.+.+++..| +|=-..+ +-+.+.|-|.|.
T Consensus 436 v~~v~ipr~~~~~~~~~G~-----GkVFVefas~ed~qrA~~~L-~GrKF~n--RtVvtsYydeDk 493 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGT-----GKVFVEFADTEDSQRAMEEL-TGRKFAN--RTVVASYYDEDK 493 (500)
T ss_pred eeEEecCCCCCCCCcCCCc-----ccEEEEecChHHHHHHHHHc-cCceeCC--cEEEEEecCHHH
Confidence 542 223433444444333 33567888889999999888 4422222 234567777663
No 90
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.08 E-value=0.0015 Score=69.15 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--------EEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
.+..|||.|| +.++|-+++.++|+++|-|.. |.|-++ +-||=|.++|-..|+|..|+..|+...+.|+
T Consensus 133 ~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3557999999 899999999999999998753 344443 6799999999999999999999999999999
Q ss_pred EEEEeecc
Q 007997 419 RVLVKPYR 426 (582)
Q Consensus 419 ~V~Vk~Ak 426 (582)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999876
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.94 E-value=0.0004 Score=76.98 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.+|+|+-.+ .-..++-+|.++|+.+|+|.+|+|+.| ++||.|||.|.+.+.+..|+. |.|+-+.|..|.|+...
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 569999998 588899999999999999999999997 789999999999999999995 59999999999998755
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 4
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.91 E-value=0.0013 Score=71.33 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=76.0
Q ss_pred ccCCCCccHHHHHHHhhhhhhhhcccCCCCCcchhhh--------hcccccccccCCCCCCCCCCCCCCCeEEEcCCCCC
Q 007997 291 RHGKAGYSLTKLLARLKNSIRLIDRCNLPHGQHSVIL--------AEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 362 (582)
Q Consensus 291 r~g~~Gysl~klL~~l~~~i~~idR~~~p~gq~av~l--------~Eda~K~~~~r~dr~d~~~~~~~~rtIyVg~L~~~ 362 (582)
++-+.||...++++..+. ++.+-| -|.+-+.+| .||-. -+++-..--++....-..++|.+.+| +.
T Consensus 168 rrnkeGyVpv~~vaSFKK-vK~LTr---d~~~va~ALr~S~kL~vseDgk-KVrRisPlp~~~~eel~srtivaenL-P~ 241 (484)
T KOG1855|consen 168 RRNKEGYVPVKLVASFKK-VKALTR---DWKLVADALRKSSKLEVSEDGK-KVRRISPLPEFDEEELPSRTIVAENL-PL 241 (484)
T ss_pred hcCCCCceeeehhhhHHH-HHHHhh---hhHHHHHHHhhcceEEEccCCc-eeeecCCCCCccccccccceEEEecC-Cc
Confidence 445779987777776532 333333 122222222 22222 12111111122223346899999999 66
Q ss_pred CCCHHHHHHHhhcCCCEeEEEeec------c-----------CCCceEEEEECCHHHHHHHHHhcCCce
Q 007997 363 TFTEQDVSNYFSKFGPVQDVRIPC------Q-----------QKRMFGFVTFVFAETVKQILAKGNPHF 414 (582)
Q Consensus 363 ~~TEedLr~~FsqFG~V~~VrI~~------D-----------~sRGfGFVtF~~~e~A~~Al~~mn~~~ 414 (582)
+-.-+.|.++|+.+|.|..|+|.. + ..+-+|+|+|+..+.|.+|.+.|+...
T Consensus 242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 666799999999999999999976 1 126789999999999999999986533
No 93
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.77 E-value=0.00067 Score=45.54 Aligned_cols=22 Identities=32% Similarity=1.234 Sum_probs=20.6
Q ss_pred eeccccccccCCCCCCCccccC
Q 007997 193 KVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 193 kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.+|.+|..|.|..|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999997
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.77 E-value=0.0027 Score=57.05 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC
Q 007997 354 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 412 (582)
Q Consensus 354 IyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~ 412 (582)
|.+.++ ...++-++|++.|++||+|..|.+.. .---|||-|.+.+.|+.|++++..
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHH
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHh
Confidence 667777 77788999999999999999999887 555899999999999999998643
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.74 E-value=0.0039 Score=49.33 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHH
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 407 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al 407 (582)
+.|-|.+- +.+ ..+.|..+|.+||+|+++.+.. ..-+.+|+|.+..+|+.||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 46777776 332 3466778999999999999984 5779999999999999985
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.67 E-value=0.0054 Score=53.50 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCCHHHHH----HHhhcCC-CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 352 RQIYLTFPAESTFTEQDVS----NYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr----~~FsqFG-~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..|||.|| +.+.+...|+ .++.-+| .|..| ..+-|+|.|.+.+.|.+|.+.|++..+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 36899999 6666665554 5555665 78877 56899999999999999999999999999999999875
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.65 E-value=0.0011 Score=69.43 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCCeEE-EcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 350 GSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 350 ~~rtIy-Vg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++| |+++ ++.+++++|+.+|..+|.|..|+++.+ ..+|||||.|........++.. ..+.+.|+.+.+..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345777 9999 999999999999999999999999885 6899999999999999999987 88999999999998
Q ss_pred ccccccc
Q 007997 425 YREKSRL 431 (582)
Q Consensus 425 Ak~K~k~ 431 (582)
..++++.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 8877554
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.65 E-value=0.0054 Score=67.55 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE-EEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....|-+.+| +|.+||+||.+||+--=.|.+ |.++.| ++-|=|||.|++.|.|+.||.. +...|..|-|.|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4558889999 999999999999998766665 444554 7789999999999999999999 899999999999865
Q ss_pred c
Q 007997 426 R 426 (582)
Q Consensus 426 k 426 (582)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 99
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.59 E-value=0.011 Score=52.75 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=64.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhc--CCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEc----CeEEE
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 421 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~----Gr~V~ 421 (582)
.||-|.|| |-..|.++|.+++.. .|...-+.+|.| -+.|||||.|.+++.|..-.+..++..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 48899999 788999999988865 577777888887 46999999999999999999999988885 56677
Q ss_pred Eeecccccc
Q 007997 422 VKPYREKSR 430 (582)
Q Consensus 422 Vk~Ak~K~k 430 (582)
|.+|+-.++
T Consensus 81 i~yAriQG~ 89 (97)
T PF04059_consen 81 ISYARIQGK 89 (97)
T ss_pred EehhHhhCH
Confidence 888776554
No 100
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.33 E-value=0.013 Score=52.38 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=50.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEE-------------eeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe-
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA- 418 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~Vr-------------I~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr- 418 (582)
.|.|=+- +.. ....|-++|++||+|.+.. ++. ...+--|+|+++.+|++||.+ |+..|.|.
T Consensus 8 wVtVFGf-p~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 8 WVTVFGF-PPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp EEEEE----GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred EEEEEcc-CHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4555454 222 5677889999999999885 443 678999999999999999999 99999885
Q ss_pred EEEEeeccc
Q 007997 419 RVLVKPYRE 427 (582)
Q Consensus 419 ~V~Vk~Ak~ 427 (582)
.|-|++.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 455776643
No 101
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.29 E-value=0.027 Score=59.97 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCCCCCCCeEEEcCCCC---CCCC-------HHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCce
Q 007997 345 GGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF 414 (582)
Q Consensus 345 ~~~~~~~rtIyVg~L~~---~~~T-------EedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~ 414 (582)
.......++|.+.|+-. +..+ .++|++--++||+|..|.|.-....|.+-|+|.+.+.|..++..|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34556678999998811 1233 3556666889999999966533679999999999999999999999999
Q ss_pred EcCeEEEEeeccccc
Q 007997 415 VCGARVLVKPYREKS 429 (582)
Q Consensus 415 i~Gr~V~Vk~Ak~K~ 429 (582)
++||.|....+-.+.
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999998776554
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.24 E-value=0.01 Score=62.93 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCeEEEcCCCCCCCCHH---HH--HHHhhcCCCEeEEEeeccC-----CCc-e-EEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 351 SRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQQ-----KRM-F-GFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEe---dL--r~~FsqFG~V~~VrI~~D~-----sRG-f-GFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
..-+||-+|++.-..|+ -| .+||+|||.|.+|.|-+.. --+ + .||||...|+|.+++.+.++..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44789999955555555 23 4899999999999886631 112 2 39999999999999999999999999
Q ss_pred EEEEeecccc
Q 007997 419 RVLVKPYREK 428 (582)
Q Consensus 419 ~V~Vk~Ak~K 428 (582)
-++..+...|
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999875544
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.013 Score=65.43 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCEeEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 367 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 367 edLr~~FsqFG~V~~VrI~~D-------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
|+|+.-+++||.|..|.|+++ -.-|--||+|.+.++++.|.++|+|..+.||.|...++-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 456666889999999999984 35678899999999999999999999999999998887653
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.02 Score=63.53 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceE----c
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----C 416 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i----~ 416 (582)
......||||||+| +--+|.++|-.+|+ -||-|.-|-|-.| ..||-|=|||.+..+--+||++ .-..| -
T Consensus 365 q~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~ 442 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDI 442 (520)
T ss_pred cccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEecccc
Confidence 33456789999999 88899999999999 6999999999887 4799999999999999999987 22222 2
Q ss_pred CeEEEEeecc
Q 007997 417 GARVLVKPYR 426 (582)
Q Consensus 417 Gr~V~Vk~Ak 426 (582)
.++|.|++|.
T Consensus 443 ~KRVEIkPYv 452 (520)
T KOG0129|consen 443 DKRVEIKPYV 452 (520)
T ss_pred ceeeeeccee
Confidence 4678888877
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.018 Score=63.96 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-------CCCc---eEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRG---fGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
..-++|||||+| +|+++|+.|...|..||.|. |..+.. ..+| |.|+.|+++..+++.+.+ ...+.
T Consensus 256 ~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEGE 330 (520)
T ss_pred cccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhcc
Confidence 345789999999 99999999999999999864 455531 3577 999999999999988776 22344
Q ss_pred eEEEEeeccc
Q 007997 418 ARVLVKPYRE 427 (582)
Q Consensus 418 r~V~Vk~Ak~ 427 (582)
....++...+
T Consensus 331 ~~~yf~vss~ 340 (520)
T KOG0129|consen 331 GNYYFKVSSP 340 (520)
T ss_pred cceEEEEecC
Confidence 4444444333
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.82 E-value=0.035 Score=56.08 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeec
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 425 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~A 425 (582)
..+++..+|+.+| +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+..|- ...+.|..+
T Consensus 142 ~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 3577889999999 788999999999999999999998763 5789999999999999999998876664 677777665
Q ss_pred c
Q 007997 426 R 426 (582)
Q Consensus 426 k 426 (582)
+
T Consensus 220 ~ 220 (221)
T KOG4206|consen 220 K 220 (221)
T ss_pred C
Confidence 4
No 107
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.43 E-value=0.016 Score=58.65 Aligned_cols=69 Identities=10% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
+......||||.|| ..++||++|+.+|+.|--...++|--....-.|||.|++.+.|..|+..+.+..|
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 33445679999999 8999999999999999876666665433444899999999999999888766555
No 108
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.37 E-value=0.02 Score=61.12 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
....-+|||-++ +..+++.++.++|.++|.|.. |.|-+| +.||=|.|+|+++..|+.|+.-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 445669999999 788999999999999998742 233333 6899999999999999999999999999
Q ss_pred cCeEEEEeecccccc
Q 007997 416 CGARVLVKPYREKSR 430 (582)
Q Consensus 416 ~Gr~V~Vk~Ak~K~k 430 (582)
+|..|+|..|..+..
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999888764
No 109
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.25 E-value=0.011 Score=49.93 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=40.0
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHH
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~ 60 (582)
..+|.+|++++|++|.||-|+||= .+..|++.|=-. +.+|+..|.+|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~-~~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLED-PELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCC-HHHHHHHHHHHHHh
Confidence 468999999999999999999985 466778888555 46777888877643
No 110
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.24 E-value=0.0096 Score=37.88 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=16.8
Q ss_pred eccccccccCCCCCCCccccC
Q 007997 194 VCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 194 pC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
||.||.. |++|++|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6898876 999999999994
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.16 E-value=0.078 Score=50.59 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCCCCCCeEEEcCCCC------CCCCH---HHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 345 GGIVAGSRQIYLTFPAE------STFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 345 ~~~~~~~rtIyVg~L~~------~~~TE---edLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
+..+|+.-||.|.-. . ..+.+ .+|-..|.+||+|.=||++- +-=+|||.+-+.|.+|++. ++..+
T Consensus 21 ~~~GPpDaTVvVsv~-~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 21 SSQGPPDATVVVSVD-SPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp -----TT-EEEEEEC-S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEE
T ss_pred HhcCCCCceEEEEec-CCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEE
Confidence 466788889988776 3 23443 25667799999999999875 4579999999999999997 99999
Q ss_pred cCeEEEEeeccc
Q 007997 416 CGARVLVKPYRE 427 (582)
Q Consensus 416 ~Gr~V~Vk~Ak~ 427 (582)
+|+.++|+.-.+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987554
No 112
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.09 E-value=0.019 Score=47.52 Aligned_cols=51 Identities=33% Similarity=0.533 Sum_probs=38.7
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHh
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (582)
.-+|.+|++++|+.|.||-|+||=- +-.|++.| +..+.+|.+-|.+|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLEM--DNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeCC--CHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 4589999999999999999999854 44667766 555666677777765433
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.09 E-value=0.024 Score=64.75 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE-EEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....-|||..| +..+++.++-++|..--.|++ |.|.+ ++.++-|||.|.+++++..|+..-..+.++.|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 44569999999 899999999999999888988 66655 68899999999999988888888789999999999987
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 666544
No 114
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.032 Score=62.57 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeecc
Q 007997 368 DVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPYR 426 (582)
Q Consensus 368 dLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~Ak 426 (582)
-|.++|+++|+|+.+.+|.+ ..+||.|+.|.+..+|+.|++.+||+.|+ +....|...+
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeehhh
Confidence 36688999999999999975 78999999999999999999999998885 5566665444
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.75 E-value=0.058 Score=63.30 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC--eEEEEee
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKP 424 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk~ 424 (582)
....++.++||+|. ..+.-..|...|..||+|..|.+-. .--|++|.|++...++.|+..|.+.-|+| +++.|.+
T Consensus 451 kst~ttr~~sgglg-~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLG-PWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCC-CCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 34557899999994 4467888999999999999977654 56699999999999999999999988876 7899999
Q ss_pred ccccccchhh
Q 007997 425 YREKSRLVDR 434 (582)
Q Consensus 425 Ak~K~k~~~r 434 (582)
|.+-...+..
T Consensus 528 a~~~~~~Pqq 537 (975)
T KOG0112|consen 528 ASPPGATPQQ 537 (975)
T ss_pred ccCCCCChhh
Confidence 9887665544
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.68 E-value=0.13 Score=55.47 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 429 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~ 429 (582)
+..-+-|-+|-..+..-+.|-++|-.||.|++|..++ .+-|-|.|+..+...+++|+..||+..+-|.++.|+..+..-
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 3457888888556777889999999999999999987 367899999999999999999999999999999999876543
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.41 E-value=0.02 Score=58.82 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec-c--------CCC-------ceEEEEECCHHHHHHHHHhcCCce
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-Q--------QKR-------MFGFVTFVFAETVKQILAKGNPHF 414 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~-D--------~sR-------GfGFVtF~~~e~A~~Al~~mn~~~ 414 (582)
..-||+++| +..+...-||++|++||.|-.|.+.. + +.+ -=|+|.|.+...|+.+.+.||+..
T Consensus 74 ~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 347999999 77899999999999999999999976 2 111 137899999999999999999999
Q ss_pred EcCeE
Q 007997 415 VCGAR 419 (582)
Q Consensus 415 i~Gr~ 419 (582)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99873
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.15 E-value=0.11 Score=56.63 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe-EEEEeecc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYR 426 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr-~V~Vk~Ak 426 (582)
.|++.+|.+.++ +.+++||+|++.|.+-|-+++...-.++.|-++.+.+.+.|+|-.|+-.|+.|.+++. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 467789999999 8899999999999999988887776666778999999999999999999999999776 78888755
No 119
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=93.81 E-value=0.025 Score=61.35 Aligned_cols=26 Identities=42% Similarity=1.064 Sum_probs=24.1
Q ss_pred CceeccccccccCCCCCCCccccCCC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHGHP 216 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg~~ 216 (582)
..|||.||--|-|+-|.+|||.||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 58999999999999999999999943
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.72 E-value=0.029 Score=57.69 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHhh-cCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 367 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 367 edLr~~Fs-qFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
|+|-..|+ +||+|+++.|-.+ .-+|=.+|.|..+|+|++|++.+|+-++.|++|......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555566 9999999977653 568999999999999999999999999999999887643
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.66 E-value=0.059 Score=57.55 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCC--EeEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~--V~~VrI~~----D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.+||||| -|.+|++||-+....-|- +.+++.-. +++||||.|...+...++..++.|....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 6899999 899999999988877773 33333332 3799999999999999999999999999999888886665
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 4
No 122
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.42 E-value=0.039 Score=58.13 Aligned_cols=27 Identities=48% Similarity=1.249 Sum_probs=25.1
Q ss_pred CCCCceecccccc-ccCCCCCCCccccC
Q 007997 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 188 ~~~~~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
....-++|.+|.+ |+|+.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 4677899999999 99999999999999
No 123
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.25 E-value=0.096 Score=54.61 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCCCeEEEcCCCC-C----------CCCHHHHHHHhhcCCCEeEEEeec
Q 007997 349 AGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 386 (582)
Q Consensus 349 ~~~rtIyVg~L~~-~----------~~TEedLr~~FsqFG~V~~VrI~~ 386 (582)
....|||+.+||- | --+|+-|+..|..||.|..|.||.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3456999998842 1 146788999999999999999976
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.59 E-value=0.51 Score=38.94 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcC---CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKF---GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 410 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqF---G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~m 410 (582)
.+|+|.|+ .+++.+|++.||..| .....|..+-|.+ +=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 48999999 578999999999999 2345788886643 678999999999999864
No 125
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.51 E-value=0.79 Score=49.72 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCCeEEEcCCC-CCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC--eEEEEeecc
Q 007997 350 GSRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYR 426 (582)
Q Consensus 350 ~~rtIyVg~L~-~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk~Ak 426 (582)
.++-|.++-|. -+.+|.+-|-.+-...|+|.+|.|.+. .---|.|+|++.+.|++|.+.||+..|.- -.++|.+|+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 45555555553 378999999999999999999988872 44469999999999999999999987743 567888888
Q ss_pred ccc
Q 007997 427 EKS 429 (582)
Q Consensus 427 ~K~ 429 (582)
+..
T Consensus 198 P~r 200 (494)
T KOG1456|consen 198 PTR 200 (494)
T ss_pred cce
Confidence 753
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.47 E-value=0.3 Score=51.34 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 366 EQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 366 EedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
|+++++-.++||+|..|.|-.+ .-----||.|...++|-+|+-.||+.+|+||.|...++..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678888999999999977552 1122479999999999999999999999999999887654
No 127
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=90.82 E-value=0.19 Score=56.47 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=30.4
Q ss_pred cccCCCCCCCCCceeccccccccCCCCCCCccccC
Q 007997 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 180 ~~rrs~~~~~~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..||.+.-.--..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 35677766666788999999999999999999999
No 128
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=90.80 E-value=1.1 Score=44.67 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE--cCeEEEEee
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKP 424 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i--~Gr~V~Vk~ 424 (582)
++.|.+| +.+-+-+||+++.-+-|.|....+.+ -|+|.|.|...|+.+-|+.++..+.+ .|-...+..
T Consensus 117 RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 117 RVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 8999999 77889999999999999999988875 56999999999999999999877665 444444444
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.85 E-value=0.04 Score=64.25 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
++||.+| +..+.+++|+..|+.+|.+..|+|.. ++.||+|+|.|..++.+.+|+.....+.++...+-|...
T Consensus 669 ~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~ 744 (881)
T KOG0128|consen 669 KIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGP 744 (881)
T ss_pred HHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCC
Confidence 8999999 88999999999999999999888862 478999999999999999999986666666444444433
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.16 E-value=0.18 Score=59.12 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
..+++|.|+ ++..|.+.++.+++.+|.|.+++++. ++.+|.|||.|.++.++..++..+....+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 89999999999999999999999877 37899999999999999999999888888877777776554
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.02 E-value=0.09 Score=61.79 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|++ +.++++.+++..|..+|.|.+|.|-. .+---||||.|.+.+.+-.|+..+-+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 446889999999 99999999999999999999998854 23345999999999999999999888888766677666
Q ss_pred cccc
Q 007997 425 YREK 428 (582)
Q Consensus 425 Ak~K 428 (582)
-.++
T Consensus 448 G~~k 451 (975)
T KOG0112|consen 448 GQPK 451 (975)
T ss_pred cccc
Confidence 5543
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.97 E-value=1.1 Score=44.37 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=48.0
Q ss_pred CHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CceEcCeEEEEeecccc
Q 007997 365 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREK 428 (582)
Q Consensus 365 TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V~Vk~Ak~K 428 (582)
..+.|+++|..|+++....+.+ +-+=..|.|.+.+.|.+|...++ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999888877 66679999999999999999998 89999999999988544
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.75 E-value=1.7 Score=41.71 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=56.3
Q ss_pred CCCCCCeEEEcCCCCCCC-CHHHHHHH---hhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTF-TEQDVSNY---FSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~-TEedLr~~---FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..++-.||.|.-| ..++ ..+|++.+ .+.||+|..|.+. .|.-|.|+|.+..+|=.|+.+... ..-|..+.+
T Consensus 82 kepPMsTIVVRWl-kknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWL-KKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCceeEEeehh-hhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3566779999887 4433 34566554 6789999999876 688999999999999999998654 556777887
Q ss_pred ee
Q 007997 423 KP 424 (582)
Q Consensus 423 k~ 424 (582)
.|
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 76
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=88.51 E-value=0.69 Score=50.28 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=53.3
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcC----CCEeEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqF----G~V~~VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
-|-+.+| +++.|+.||.+||..- |-++.|-.++ ++.-|=|||.|..++.|+.||.+ +...|+-|-|.+.+
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 3455789 8999999999999732 2333443333 37889999999999999999998 77777777666544
No 135
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.40 E-value=0.73 Score=50.22 Aligned_cols=75 Identities=15% Similarity=0.275 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec--c-----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC--Q-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~--D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
-|-|+|| ....|.++++.+|+-.|+|.+++|.. | -..-.+||.|.+...|..|--. .+..+-++.+.|.+|
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 7999999 88999999999999999999999866 2 2345899999999988887554 455555677777776
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
....
T Consensus 87 ~~~~ 90 (479)
T KOG4676|consen 87 GDEV 90 (479)
T ss_pred CCCC
Confidence 6543
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=88.36 E-value=0.41 Score=52.49 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC-ceEcCeEEEEeecccccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYREKSR 430 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~-~~i~Gr~V~Vk~Ak~K~k 430 (582)
.++|+||| ....+..||+.+|..----..-.++. .-||+||...+..-|.+|++.+++ ..+.|+++.|....+|..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 37999999 88999999999998641111111111 679999999999999999999876 678999999998887765
Q ss_pred chhh
Q 007997 431 LVDR 434 (582)
Q Consensus 431 ~~~r 434 (582)
...+
T Consensus 79 rsrk 82 (584)
T KOG2193|consen 79 RSRK 82 (584)
T ss_pred Hhhh
Confidence 4433
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.00 E-value=1.1 Score=47.44 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=51.9
Q ss_pred CHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe-EEEEeecccccc
Q 007997 365 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYREKSR 430 (582)
Q Consensus 365 TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr-~V~Vk~Ak~K~k 430 (582)
.-.-|-.+|++||+|+++.... .-.|=.|.|.+.-+|++||.+ |+.+|+|. .|-|+....|..
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 3466888999999999987764 667999999999999999999 99999885 456777666543
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=87.71 E-value=1.5 Score=50.88 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEe-EEEeec-c--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPC-Q--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~-~VrI~~-D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.+-|-+.|. +++++-+||-+||.-|-.+- +|+|-+ | ..-|=+-|-|++.++|.+|...+++..|.+|.|++..
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 446778888 89999999999999998775 455544 2 5678999999999999999999999999999998753
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.06 E-value=0.31 Score=51.95 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=59.6
Q ss_pred CeEEEcCCCCCCCCHHHHH--HHhhcCCCEeEEEeeccCC-------CceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 352 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQK-------RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr--~~FsqFG~V~~VrI~~D~s-------RGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..+||-+|+..-..|..|+ +||++||.|..|.+-.+.+ --=++|||...|+|..||...++..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4677777743444555555 6899999999998877521 112899999999999999999999999998777
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.....+-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6655553
No 140
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=0.29 Score=52.82 Aligned_cols=23 Identities=43% Similarity=1.070 Sum_probs=21.9
Q ss_pred eeccccccccCCCCCCCccccCC
Q 007997 193 KVCHYFNKGFCKHGNNCRYFHGH 215 (582)
Q Consensus 193 kpC~Yf~rG~Ck~G~~Cry~Hg~ 215 (582)
.+|.||.+|+|+.|.-|||.|--
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhcccccccccceeeeeccC
Confidence 79999999999999999999993
No 141
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=83.97 E-value=0.91 Score=47.06 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcC----CceEcCeEEEEee
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 424 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn----~~~i~Gr~V~Vk~ 424 (582)
.-|||.|| ..-++.+.+..-|+.||+|+...+.-| +.-+=|+|.|...-.+..|+...+ +...+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999 788999999999999999997655554 667789999999999999998763 2445677777765
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 142
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=82.95 E-value=1.5 Score=50.14 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=63.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhh-cCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE---cCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~Fs-qFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i---~Gr~V~V 422 (582)
.++.+.-|||.|| -.-||.-+|+.+.+ ..|.|++..| |+-|--+||+|.+.+.|-+...+|++..+ +++.+.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 3455779999999 67899999999999 5777877733 55677899999999999999999999877 6677777
Q ss_pred eeccc
Q 007997 423 KPYRE 427 (582)
Q Consensus 423 k~Ak~ 427 (582)
.+...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 66554
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=81.02 E-value=1.8 Score=47.29 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEe-E--EEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-D--VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~-~--VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
..-|-+.+| ++..+-||+-.||..|-.-+ - |.++. ++.-|=|||.|.+.|.|.+|..+-.++....|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999 89999999999999987533 2 56655 27789999999999999999999888888899999987
Q ss_pred cccc
Q 007997 425 YREK 428 (582)
Q Consensus 425 Ak~K 428 (582)
+.-.
T Consensus 359 ~S~e 362 (508)
T KOG1365|consen 359 CSVE 362 (508)
T ss_pred ccHH
Confidence 6643
No 144
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=78.09 E-value=2.9 Score=34.20 Aligned_cols=67 Identities=33% Similarity=0.562 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHhhcCCC--CccccccchhHHHhhcchhhhccccccccccCCCCc-cHHHHHHHhhhhhhhhcccCCC
Q 007997 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRCNLP 319 (582)
Q Consensus 243 ~le~le~e~~ell~~~~g~--p~~~~~~p~~yfekygk~l~~~~~~~~sqr~g~~Gy-sl~klL~~l~~~i~~idR~~~p 319 (582)
+++.+..++.+++.+.++. .+..+.++..|..+| ..+.. ..-|| ++..++..+.+.+.+.++ +
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~----------~~yG~~~l~~ll~~~~~~~~i~~~---~ 67 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDP----------RDYGFSSLSELLESLPDVVEIEER---Q 67 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--T----------CCTTSSSHHHHHHT-TTTEEEEEE---E
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCc----------cccCCCcHHHHHHhCCCeEEEeee---C
Confidence 3567888999999777654 788999999998888 66654 23477 688888767666666555 5
Q ss_pred CCcc
Q 007997 320 HGQH 323 (582)
Q Consensus 320 ~gq~ 323 (582)
+|++
T Consensus 68 ~g~~ 71 (74)
T PF12872_consen 68 HGGQ 71 (74)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 5544
No 145
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=75.43 E-value=1.5 Score=29.54 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=16.8
Q ss_pred eccccccc-cCCCCCCCcccc
Q 007997 194 VCHYFNKG-FCKHGNNCRYFH 213 (582)
Q Consensus 194 pC~Yf~rG-~Ck~G~~Cry~H 213 (582)
.|.|..+| .|.. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999998 8976 8999998
No 146
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=73.50 E-value=1.2 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.6
Q ss_pred ceeccccccccCCCCCC-CccccC
Q 007997 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~~-Cry~Hg 214 (582)
.-+|.=|.||.|+||.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 56899999999999999 999997
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=73.29 E-value=2.5 Score=44.53 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec----cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~----D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...+.|+|.+ .+.+.+.+...+|.++|.+..+.... +.++|++.|.|...+.+..++...-...+.++.+.....
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4679999999 88888888999999999998888776 278999999999999999999985556777777766655
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
..+.
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5544
No 148
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=72.89 E-value=14 Score=32.60 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 412 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~ 412 (582)
..-.||+++ ......||.++|+.||.|.=--| .-.-|||...+.+.|+.|+..+..
T Consensus 9 dHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhcc
Confidence 457889987 44578999999999999764444 345799999999999999887643
No 149
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=72.28 E-value=1.5 Score=46.34 Aligned_cols=22 Identities=36% Similarity=1.144 Sum_probs=20.8
Q ss_pred eeccccccccCCCCCCCccccC
Q 007997 193 KVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 193 kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
-.|-||..|.|..|..|+|+|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 3699999999999999999999
No 150
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=71.01 E-value=4.1 Score=47.15 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=64.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 345 GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 345 ~~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....+...++|||++ ...+..+-++.+...+|-|..+.... |||..|........|+..+....++|..+.++.
T Consensus 34 ~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 344566779999999 78888888999999999988876665 999999999999999999999999999888876
Q ss_pred c
Q 007997 425 Y 425 (582)
Q Consensus 425 A 425 (582)
-
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 4
No 151
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=69.70 E-value=2.2 Score=45.79 Aligned_cols=23 Identities=39% Similarity=1.208 Sum_probs=15.4
Q ss_pred ceecccccc-ccCCCCCCCccccC
Q 007997 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
..+|.||+. |.|.+|..|.|.|+
T Consensus 105 ~rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 105 MRECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred cccccccccccccccccCCcccCC
Confidence 346666655 67777777777777
No 152
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=69.68 E-value=2.1 Score=45.14 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.7
Q ss_pred ceecccc-ccccCCCCCCCccccCC
Q 007997 192 VKVCHYF-NKGFCKHGNNCRYFHGH 215 (582)
Q Consensus 192 ~kpC~Yf-~rG~Ck~G~~Cry~Hg~ 215 (582)
.-||.|| .+|.|+.|..|.|.|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 4589999 78999999999999994
No 153
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=69.34 E-value=2 Score=43.83 Aligned_cols=23 Identities=35% Similarity=1.071 Sum_probs=19.8
Q ss_pred ceecccc-ccccCCCCCCCccccC
Q 007997 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf-~rG~Ck~G~~Cry~Hg 214 (582)
.--|.|+ +.|.|..|..|||+|.
T Consensus 206 avycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eeEEEEecCCCcccCCceeeeecc
Confidence 3458887 6799999999999999
No 154
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=60.44 E-value=3.9 Score=43.13 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=23.8
Q ss_pred CCCCceecccccc-ccCCC-CCCCccccC
Q 007997 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (582)
Q Consensus 188 ~~~~~kpC~Yf~r-G~Ck~-G~~Cry~Hg 214 (582)
..+.-..|-+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4667788999977 99999 999999998
No 155
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=59.99 E-value=22 Score=40.84 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=49.5
Q ss_pred CCeEEE-cCCCCCCCCHHHHHHHhhc--CCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CceEcCeEEE
Q 007997 351 SRQIYL-TFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVL 421 (582)
Q Consensus 351 ~rtIyV-g~L~~~~~TEedLr~~Fsq--FG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V~ 421 (582)
.|.|.| .-| +.++-+|+|+.+|.- +=++.+|.... .-+ =||||++..+|+.|++.+. -..|.|+.|.
T Consensus 174 kRcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~n-WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--NDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 344444 557 788889999999975 77888888765 333 5999999999999988763 3556666554
No 156
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=57.65 E-value=7.8 Score=46.18 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=66.8
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCce--EcCeEEEEe
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGARVLVK 423 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~--i~Gr~V~Vk 423 (582)
..-|...+.++.+. .-..+...|..+|++||.|.+.+..+ .-..|.|.|...+.|-.|++++.|.. .-|-..+|.
T Consensus 293 nv~plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 293 NVFPLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred ccccCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 44455668888888 67889999999999999999999988 44469999999999999999987754 467888888
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
.|+.-.
T Consensus 370 ~ak~~~ 375 (1007)
T KOG4574|consen 370 FAKTLP 375 (1007)
T ss_pred eccccc
Confidence 877643
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=55.22 E-value=2.9 Score=42.77 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=51.5
Q ss_pred CeEEEcC----CCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 352 RQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 352 rtIyVg~----L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
.|++-|+ | +..++++.+...|++-|+++.+++..+ +.|-++||++.-..++-.++....+...
T Consensus 81 ~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 81 RTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3555565 5 678899999999999999999999985 7899999999998888888876544333
No 158
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=53.20 E-value=13 Score=36.36 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhc-CCCE---eEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~Fsq-FG~V---~~VrI~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
..||.|.+| +.++||+++.+..+. +|.- ..+.-..+ ..-.-|||.|.+.+++..-....+++.+.+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 349999999 889999999997776 6666 23321111 123459999999999999999999977744
No 159
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=51.57 E-value=16 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhhcCCC-----EeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 362 STFTEQDVSNYFSKFGP-----VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 362 ~~~TEedLr~~FsqFG~-----V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++..+|-.++..-+. |-+|+| ...|.||.-.. +.|..+++.|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46788888888887654 445666 45599999865 4788899999999999999999875
No 160
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=48.03 E-value=7.2 Score=39.33 Aligned_cols=24 Identities=29% Similarity=1.031 Sum_probs=19.0
Q ss_pred Cceecccc-ccccCCCCCCCccccC
Q 007997 191 PVKVCHYF-NKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf-~rG~Ck~G~~Cry~Hg 214 (582)
---.|.=| ..|||-.|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 34456644 5699999999999998
No 161
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=45.04 E-value=9.6 Score=41.07 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=24.2
Q ss_pred CCCceeccccccccCCCCCCCccccC
Q 007997 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 189 ~~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..+-..|.|+-+|.|+.|..|-|+|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 55788999999999999999999998
No 162
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=43.38 E-value=1.2e+02 Score=27.64 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=49.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVC 416 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~ 416 (582)
...+-+..+ ++.++-++|..+.+.+- .|..++|++| .+|=.+.++|.+.+.|..=....||..++
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334455555 77777788877766654 5678999997 45667889999999999999998887664
No 163
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=39.74 E-value=13 Score=39.85 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=25.0
Q ss_pred CCCCCCCCceeccccccccCCCCCCCccccC
Q 007997 184 SPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 184 s~~~~~~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
...++...+-=|+=+.||-|.| .+|||+|.
T Consensus 63 ~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 63 NCQVSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred CCCccCCeEEEEeccccCccCc-ccceecCC
Confidence 3445666788899999999999 55999999
No 164
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=37.26 E-value=15 Score=37.72 Aligned_cols=23 Identities=39% Similarity=0.946 Sum_probs=17.7
Q ss_pred ceecccccc-ccCCCCCCCccccC
Q 007997 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
.-+|.-|++ |||.-|.+|+-.|=
T Consensus 288 apicfefakygfcelgtscknqhi 311 (377)
T KOG1492|consen 288 APICFEFAKYGFCELGTSCKNQHI 311 (377)
T ss_pred Cceeeeehhcceecccccccccee
Confidence 346777877 88888888887775
No 165
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=36.92 E-value=13 Score=38.41 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.7
Q ss_pred eeccccccccCCCCCCCccccC
Q 007997 193 KVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 193 kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
-.|-.|..|-|..|..|+|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 166
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.98 E-value=66 Score=26.83 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCEeEEEeec
Q 007997 367 QDVSNYFSKFGPVQDVRIPC 386 (582)
Q Consensus 367 edLr~~FsqFG~V~~VrI~~ 386 (582)
.+||++|++.|+|.-+.|-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999998887743
No 167
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=31.73 E-value=20 Score=38.70 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=19.7
Q ss_pred HHHhhcchhhhccccccccccCCCCc
Q 007997 272 YYEKYGKTLQAEGYLTESQRHGKAGY 297 (582)
Q Consensus 272 yfekygk~l~~~~~~~~sqr~g~~Gy 297 (582)
.|+|||++|+++.+.++.. ++|+||
T Consensus 116 MF~kfG~VldVEIIfNERG-SKGFGF 140 (376)
T KOG0125|consen 116 MFEKFGKVLDVEIIFNERG-SKGFGF 140 (376)
T ss_pred HHHhhCceeeEEEEeccCC-CCccce
Confidence 6899999999999998843 345555
No 168
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=30.64 E-value=26 Score=37.48 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=23.4
Q ss_pred CCCceecccccc-ccCCCCCCCccccC
Q 007997 189 EFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 189 ~~~~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
.|.-+||.-..+ |||.-|..|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 566799998776 99999999999999
No 169
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=27.82 E-value=29 Score=36.80 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=23.0
Q ss_pred CCceeccccccccCCCCCCCccccC
Q 007997 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 190 ~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
-.--+|.+|-+|-|+.|..|.|+|+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cCCcccchhccccCcCCCccccccC
Confidence 3566999999999999999999999
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.28 E-value=2.1e+02 Score=33.45 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=58.5
Q ss_pred CCCCCCeEEEcCCCCC-CCCHHHHHHHhhcC----CCEeEEEeec---c----------CC-------------------
Q 007997 347 IVAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPC---Q----------QK------------------- 389 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~-~~TEedLr~~FsqF----G~V~~VrI~~---D----------~s------------------- 389 (582)
.+..+++|-|-|+ +| .+..+||--+|+.| |.|..|.|.. + ..
T Consensus 170 ~~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 170 LGEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred cccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 3456889999999 88 46779999998866 5899988754 1 01
Q ss_pred -------------------CceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 390 -------------------RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 390 -------------------RGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
-=||.|+|.+.++|.++++.-.|..+...-..+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 127999999999999999999998886655444
No 171
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=23.49 E-value=30 Score=35.78 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=20.3
Q ss_pred HHHhhcchhhhcccccc-ccccCCCCc
Q 007997 272 YYEKYGKTLQAEGYLTE-SQRHGKAGY 297 (582)
Q Consensus 272 yfekygk~l~~~~~~~~-sqr~g~~Gy 297 (582)
|||+||+++.+..+-+. ++|.++-||
T Consensus 32 yFeqfGeI~eavvitd~~t~rskGyGf 58 (247)
T KOG0149|consen 32 YFEQFGEIVEAVVITDKNTGRSKGYGF 58 (247)
T ss_pred HHHHhCceEEEEEEeccCCccccceee
Confidence 99999999998655554 777777676
No 172
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.88 E-value=37 Score=36.93 Aligned_cols=26 Identities=42% Similarity=0.930 Sum_probs=23.9
Q ss_pred CCCceecccccc--ccCCCCCCCccccC
Q 007997 189 EFPVKVCHYFNK--GFCKHGNNCRYFHG 214 (582)
Q Consensus 189 ~~~~kpC~Yf~r--G~Ck~G~~Cry~Hg 214 (582)
+...|.|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 567899999987 79999999999998
No 173
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.41 E-value=49 Score=33.12 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=51.6
Q ss_pred eEEEcCCCCCCCCHH----HHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe-EEEEeeccc
Q 007997 353 QIYLTFPAESTFTEQ----DVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYRE 427 (582)
Q Consensus 353 tIyVg~L~~~~~TEe----dLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr-~V~Vk~Ak~ 427 (582)
++.+..+....+++. ...++|-+|-+.+-.++.+ +.++--|.|.+++.|..|..++....+.|. .++...+.+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 355555533333333 3445566666655555554 667777899999999999999999999998 777777776
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
--
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 43
No 174
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.94 E-value=1.2e+02 Score=34.82 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=51.8
Q ss_pred eEEEcCCCCCCCCHHHHHHHh-hcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEc----CeEEEEe
Q 007997 353 QIYLTFPAESTFTEQDVSNYF-SKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVLVK 423 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~F-sqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~----Gr~V~Vk 423 (582)
++-|.++ +-..|-.-|.+.- ...|.=.-+.++.| ...|||||.|.+++.+....++-|+..++ .+.+.+.
T Consensus 390 t~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 390 TLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 5555666 4444444444442 23677777888887 46899999999999999999998886653 3444555
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
||+-.++
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 5554443
No 175
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=21.19 E-value=18 Score=26.69 Aligned_cols=17 Identities=29% Similarity=1.071 Sum_probs=14.2
Q ss_pred cccccccCCCCCCCcccc
Q 007997 196 HYFNKGFCKHGNNCRYFH 213 (582)
Q Consensus 196 ~Yf~rG~Ck~G~~Cry~H 213 (582)
.||.|.||. |+.|+-++
T Consensus 16 iyFRRAyCd-Gs~C~Cvf 32 (35)
T PF11415_consen 16 IYFRRAYCD-GSRCKCVF 32 (35)
T ss_dssp TTEEEEEEE-TTEEEEEE
T ss_pred chhhhhhcc-CCeeEEEe
Confidence 599999998 79998654
No 176
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.10 E-value=84 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.139 Sum_probs=24.4
Q ss_pred EEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 393 GFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 393 GFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
|||||++..+|+.|++....+ .++.++|..|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCc
Confidence 799999999999999864322 3355566665554
No 177
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=36 Score=36.29 Aligned_cols=26 Identities=23% Similarity=1.048 Sum_probs=20.0
Q ss_pred CCCceecccc-ccccCCCCCCCccccC
Q 007997 189 EFPVKVCHYF-NKGFCKHGNNCRYFHG 214 (582)
Q Consensus 189 ~~~~kpC~Yf-~rG~Ck~G~~Cry~Hg 214 (582)
.+..-+|.=| --|||.-|.+|+|+|-
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhh
Confidence 3444567644 5599999999999997
No 178
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=20.14 E-value=5.2e+02 Score=21.61 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 362 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 362 ~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
-.++-++++.-+..|+- .+|+. | .-|| ||.|.+..+|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999985 33332 2 3454 89999999999999999998888877654
No 179
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.05 E-value=66 Score=36.77 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=20.6
Q ss_pred CCCceeccccccccCCCCCCCccccCCC
Q 007997 189 EFPVKVCHYFNKGFCKHGNNCRYFHGHP 216 (582)
Q Consensus 189 ~~~~kpC~Yf~rG~Ck~G~~Cry~Hg~~ 216 (582)
..+.+.=+|-+.|+|..|-+|||.-++.
T Consensus 112 Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 112 DIGPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred ccCCccceeeccccCCccceeehhhccc
Confidence 4454433455779999999999987754
Done!