Query 007997
Match_columns 582
No_of_seqs 354 out of 1761
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 99.9 2.3E-24 7.7E-29 215.8 10.6 96 334-432 117-233 (240)
2 4f25_A Polyadenylate-binding p 99.7 9.7E-18 3.3E-22 147.8 9.5 82 350-432 4-87 (115)
3 4fxv_A ELAV-like protein 1; RN 99.7 2E-17 7E-22 142.8 10.0 76 351-427 19-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 4.7E-17 1.6E-21 143.4 11.2 81 349-430 4-88 (110)
5 2lxi_A RNA-binding protein 10; 99.7 1.5E-17 5E-22 141.2 7.2 80 351-431 1-86 (91)
6 4f02_A Polyadenylate-binding p 99.7 1.2E-17 4.2E-22 161.0 6.7 84 350-434 102-187 (213)
7 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.2E-17 3.1E-21 132.4 10.0 80 346-426 2-85 (85)
8 1whw_A Hypothetical protein ri 99.7 1.4E-16 4.9E-21 135.3 11.4 83 348-431 5-91 (99)
9 2cq3_A RNA-binding protein 9; 99.7 2.5E-16 8.6E-21 134.9 12.6 86 346-432 10-97 (103)
10 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.7E-16 9.3E-21 134.7 12.6 83 347-430 11-95 (103)
11 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.1E-17 3.1E-21 132.9 9.2 80 349-429 4-87 (87)
12 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 131.1 9.8 78 351-429 1-82 (83)
13 2dgs_A DAZ-associated protein 99.7 1.5E-16 5.2E-21 135.3 10.4 84 346-431 5-92 (99)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.7E-21 136.8 9.4 85 346-431 7-95 (102)
15 2e5h_A Zinc finger CCHC-type a 99.7 3.4E-16 1.2E-20 131.5 12.3 80 346-426 11-94 (94)
16 2x1f_A MRNA 3'-END-processing 99.7 2.8E-16 9.6E-21 133.2 11.7 84 350-434 1-88 (96)
17 2cq0_A Eukaryotic translation 99.7 1.7E-16 5.8E-21 136.0 10.3 84 347-431 11-98 (103)
18 1x5u_A Splicing factor 3B subu 99.7 3.1E-16 1.1E-20 134.5 11.4 84 347-431 11-98 (105)
19 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.6E-21 130.3 10.4 79 350-429 3-86 (88)
20 1x4h_A RNA-binding protein 28; 99.7 3.6E-16 1.2E-20 135.2 11.7 84 347-431 11-104 (111)
21 2dnz_A Probable RNA-binding pr 99.7 2.2E-16 7.7E-21 132.9 10.0 81 349-430 3-87 (95)
22 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.9E-21 133.8 9.1 82 349-431 3-89 (96)
23 2dnm_A SRP46 splicing factor; 99.7 1.5E-16 5.2E-21 136.3 8.9 83 348-431 10-96 (103)
24 2dgx_A KIAA0430 protein; RRM d 99.7 3.8E-16 1.3E-20 133.0 11.3 81 349-430 7-92 (96)
25 1sjq_A Polypyrimidine tract-bi 99.7 1.7E-16 5.8E-21 140.3 9.3 82 348-432 13-96 (105)
26 1x4a_A Splicing factor, argini 99.7 5.7E-16 1.9E-20 134.2 12.5 83 347-430 18-101 (109)
27 2wbr_A GW182, gawky, LD47780P; 99.7 3E-16 1E-20 135.0 10.2 76 348-426 4-79 (89)
28 2do4_A Squamous cell carcinoma 99.7 3.3E-16 1.1E-20 133.5 10.3 82 348-430 14-98 (100)
29 1x5s_A Cold-inducible RNA-bind 99.7 2.3E-16 7.8E-21 134.7 9.0 85 346-431 7-95 (102)
30 2e5j_A Methenyltetrahydrofolat 99.7 2.5E-16 8.4E-21 134.0 9.1 82 347-430 15-96 (97)
31 2dgo_A Cytotoxic granule-assoc 99.7 5.6E-16 1.9E-20 135.3 11.5 85 347-432 11-99 (115)
32 2cqc_A Arginine/serine-rich sp 99.7 5.7E-16 1.9E-20 130.2 11.2 80 347-427 11-94 (95)
33 2cpf_A RNA binding motif prote 99.7 4E-16 1.4E-20 132.3 10.2 82 349-431 3-91 (98)
34 2ytc_A PRE-mRNA-splicing facto 99.6 7.6E-16 2.6E-20 127.1 11.2 76 348-426 9-85 (85)
35 2jvr_A Nucleolar protein 3; RN 99.6 3.8E-16 1.3E-20 138.7 9.9 83 346-429 23-106 (111)
36 2d9p_A Polyadenylate-binding p 99.6 3.2E-16 1.1E-20 134.3 9.0 83 348-431 12-96 (103)
37 2cpz_A CUG triplet repeat RNA- 99.6 2.7E-16 9.2E-21 137.5 8.7 84 347-431 21-108 (115)
38 2err_A Ataxin-2-binding protei 99.6 3.7E-16 1.3E-20 136.4 9.5 83 346-429 24-108 (109)
39 3ns6_A Eukaryotic translation 99.6 7.3E-17 2.5E-21 138.8 4.9 79 351-430 6-95 (100)
40 2dnh_A Bruno-like 5, RNA bindi 99.6 5E-16 1.7E-20 133.3 10.0 84 347-431 11-100 (105)
41 2lkz_A RNA-binding protein 5; 99.6 1.6E-16 5.5E-21 137.0 6.9 77 350-427 8-94 (95)
42 2cph_A RNA binding motif prote 99.6 6.8E-16 2.3E-20 132.6 10.6 84 347-431 11-100 (107)
43 3p5t_L Cleavage and polyadenyl 99.6 7.2E-17 2.4E-21 135.7 4.3 79 352-431 2-86 (90)
44 1oo0_B CG8781-PA, drosophila Y 99.6 6.2E-16 2.1E-20 134.0 10.3 81 349-430 24-108 (110)
45 1s79_A Lupus LA protein; RRM, 99.6 2.4E-16 8.1E-21 137.5 7.6 78 349-428 9-89 (103)
46 1p27_B RNA-binding protein 8A; 99.6 3.6E-16 1.2E-20 134.4 8.6 81 349-430 21-105 (106)
47 2la4_A Nuclear and cytoplasmic 99.6 4.2E-16 1.5E-20 133.0 8.7 77 349-428 25-101 (101)
48 1nu4_A U1A RNA binding domain; 99.6 4.8E-16 1.6E-20 131.3 8.9 85 348-433 5-94 (97)
49 2do0_A HnRNP M, heterogeneous 99.6 9.5E-16 3.2E-20 133.4 11.0 83 347-430 11-96 (114)
50 2dgp_A Bruno-like 4, RNA bindi 99.6 5.7E-16 1.9E-20 133.1 9.5 83 347-430 9-98 (106)
51 1x4c_A Splicing factor, argini 99.6 1.7E-15 5.7E-20 131.7 12.5 80 349-432 13-97 (108)
52 2dgv_A HnRNP M, heterogeneous 99.6 4.4E-16 1.5E-20 130.3 8.5 82 348-430 5-88 (92)
53 3r27_A HnRNP L, heterogeneous 99.6 7.8E-16 2.7E-20 134.9 10.3 81 346-429 16-98 (100)
54 2dh8_A DAZ-associated protein 99.6 5.8E-16 2E-20 133.1 9.3 83 348-432 13-99 (105)
55 2dnq_A RNA-binding protein 4B; 99.6 8E-16 2.7E-20 128.9 9.9 79 348-431 5-83 (90)
56 3ucg_A Polyadenylate-binding p 99.6 8.3E-16 2.8E-20 127.6 9.8 76 351-428 6-85 (89)
57 2cpi_A CCR4-NOT transcription 99.6 6.4E-16 2.2E-20 135.1 9.6 80 349-429 13-102 (111)
58 3md3_A Nuclear and cytoplasmic 99.6 1.1E-15 3.8E-20 138.1 11.4 80 347-427 83-166 (166)
59 2cq1_A PTB-like protein L; RRM 99.6 9.8E-16 3.4E-20 133.6 10.6 82 347-431 11-94 (101)
60 2ywk_A Putative RNA-binding pr 99.6 6.3E-16 2.2E-20 130.1 9.0 79 348-427 13-94 (95)
61 2a3j_A U1 small nuclear ribonu 99.6 5.8E-16 2E-20 140.4 9.4 86 348-434 26-116 (127)
62 1why_A Hypothetical protein ri 99.6 1E-15 3.5E-20 130.0 9.9 80 348-430 14-95 (97)
63 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.5E-20 133.1 11.0 81 348-430 22-106 (109)
64 2dgu_A Heterogeneous nuclear r 99.6 1.3E-15 4.6E-20 130.8 10.8 80 348-432 8-87 (103)
65 1x4d_A Matrin 3; structural ge 99.6 5.9E-16 2E-20 135.7 8.6 80 348-430 12-94 (102)
66 2div_A TRNA selenocysteine ass 99.6 7.9E-16 2.7E-20 130.7 9.0 81 348-429 6-95 (99)
67 2cqd_A RNA-binding region cont 99.6 2.5E-15 8.4E-20 131.6 12.3 81 348-430 14-98 (116)
68 2ad9_A Polypyrimidine tract-bi 99.6 6.2E-16 2.1E-20 139.4 8.7 83 346-431 26-110 (119)
69 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-15 4.5E-20 137.1 10.6 85 347-432 38-126 (139)
70 2cpj_A Non-POU domain-containi 99.6 9.7E-16 3.3E-20 130.6 9.2 81 347-430 11-91 (99)
71 3s7r_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 125.7 10.5 76 348-425 8-87 (87)
72 1x4g_A Nucleolysin TIAR; struc 99.6 1.4E-15 4.6E-20 132.0 10.3 80 349-431 23-102 (109)
73 2xnq_A Nuclear polyadenylated 99.6 2E-15 6.8E-20 129.3 11.0 79 346-429 17-96 (97)
74 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 3.9E-20 129.2 9.4 80 347-430 7-86 (89)
75 2fy1_A RNA-binding motif prote 99.6 1.1E-15 3.6E-20 135.3 9.5 83 349-432 5-90 (116)
76 1p1t_A Cleavage stimulation fa 99.6 5.5E-16 1.9E-20 132.6 7.4 84 350-434 7-94 (104)
77 2dng_A Eukaryotic translation 99.6 1.9E-15 6.4E-20 129.7 10.7 80 348-430 12-95 (103)
78 2khc_A Testis-specific RNP-typ 99.6 1.6E-15 5.4E-20 133.0 10.3 78 348-426 37-118 (118)
79 2kxn_B Transformer-2 protein h 99.6 1E-15 3.6E-20 138.2 9.4 82 347-429 42-127 (129)
80 2cpe_A RNA-binding protein EWS 99.6 1.3E-15 4.4E-20 132.6 9.5 82 349-431 13-106 (113)
81 1wex_A Hypothetical protein (r 99.6 9.5E-16 3.3E-20 134.3 8.7 80 348-430 12-93 (104)
82 3n9u_C Cleavage and polyadenyl 99.6 1.2E-15 4E-20 142.6 9.8 80 350-430 54-139 (156)
83 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.2E-15 1.1E-19 133.8 12.3 79 346-425 58-140 (140)
84 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-15 4.4E-20 133.0 9.4 80 349-429 6-86 (115)
85 2jrs_A RNA-binding protein 39; 99.6 9E-16 3.1E-20 134.1 8.4 81 348-429 23-107 (108)
86 2kt5_A RNA and export factor-b 99.6 2.8E-15 9.4E-20 132.9 11.6 85 346-431 30-117 (124)
87 2nlw_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 131.1 9.8 80 350-430 14-102 (105)
88 2cq4_A RNA binding motif prote 99.6 9.1E-16 3.1E-20 133.9 8.1 79 350-430 24-106 (114)
89 2la6_A RNA-binding protein FUS 99.6 1.1E-15 3.9E-20 130.1 8.4 79 347-426 9-99 (99)
90 1wi8_A EIF-4B, eukaryotic tran 99.6 2.1E-15 7.2E-20 129.6 10.0 80 349-431 13-97 (104)
91 2dgw_A Probable RNA-binding pr 99.6 3.1E-15 1.1E-19 125.4 10.8 80 348-430 7-89 (91)
92 2cqg_A TDP-43, TAR DNA-binding 99.6 3.5E-15 1.2E-19 127.8 11.3 81 348-431 12-96 (103)
93 2mss_A Protein (musashi1); RNA 99.6 6.4E-16 2.2E-20 124.9 6.3 71 353-425 1-75 (75)
94 3ex7_B RNA-binding protein 8A; 99.6 1.5E-15 5.1E-20 134.6 9.2 84 348-432 19-106 (126)
95 2dhg_A TRNA selenocysteine ass 99.6 1E-15 3.5E-20 131.1 7.8 81 349-430 7-92 (104)
96 3ulh_A THO complex subunit 4; 99.6 2.4E-15 8.3E-20 129.4 10.1 79 347-426 25-106 (107)
97 2cqp_A RNA-binding protein 12; 99.6 1.2E-15 4.2E-20 129.3 8.1 82 347-429 11-96 (98)
98 1x4b_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 131.9 9.9 80 350-431 26-109 (116)
99 2dis_A Unnamed protein product 99.6 1.8E-15 6.2E-20 130.6 9.1 82 349-431 6-95 (109)
100 2dgt_A RNA-binding protein 30; 99.6 4.7E-15 1.6E-19 124.7 11.4 79 348-431 7-85 (92)
101 2kn4_A Immunoglobulin G-bindin 99.6 2.3E-15 7.8E-20 138.2 10.1 83 348-431 67-153 (158)
102 2cpy_A RNA-binding protein 12; 99.6 2.1E-15 7.3E-20 132.4 9.4 82 348-431 12-97 (114)
103 2cqh_A IGF-II mRNA-binding pro 99.6 8.2E-16 2.8E-20 129.4 6.5 80 348-431 5-86 (93)
104 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.3E-16 2.5E-20 132.2 6.2 79 348-429 16-99 (100)
105 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 142.3 8.3 83 349-433 102-188 (196)
106 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.3E-15 1.1E-19 137.5 10.9 83 347-430 35-121 (156)
107 1x5p_A Negative elongation fac 99.6 8.6E-15 2.9E-19 124.4 12.5 79 348-431 12-90 (97)
108 2i2y_A Fusion protein consists 99.6 2.2E-15 7.6E-20 137.8 9.4 81 347-429 69-149 (150)
109 2cpd_A Apobec-1 stimulating pr 99.6 9.4E-15 3.2E-19 124.4 12.6 79 347-430 11-91 (99)
110 1wg5_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 129.0 9.8 78 349-428 13-94 (104)
111 2jvo_A Nucleolar protein 3; nu 99.6 3.2E-15 1.1E-19 130.7 9.7 78 348-430 28-105 (108)
112 2hvz_A Splicing factor, argini 99.6 9.8E-16 3.3E-20 130.8 6.2 78 352-431 1-78 (101)
113 2m2b_A RNA-binding protein 10; 99.6 7.9E-16 2.7E-20 138.3 5.8 81 348-430 20-110 (131)
114 1whx_A Hypothetical protein ri 99.6 1.4E-15 4.8E-20 133.5 7.3 76 350-428 9-84 (111)
115 1x4e_A RNA binding motif, sing 99.6 6.6E-16 2.3E-20 127.6 4.7 77 349-426 3-83 (85)
116 2ek1_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 128.6 5.9 79 348-427 12-94 (95)
117 2dnp_A RNA-binding protein 14; 99.6 6E-15 2E-19 123.6 10.3 78 348-430 6-83 (90)
118 2cjk_A Nuclear polyadenylated 99.6 8.2E-16 2.8E-20 140.0 5.3 77 350-428 86-166 (167)
119 2kvi_A Nuclear polyadenylated 99.6 2E-15 6.8E-20 128.4 7.3 78 348-430 7-85 (96)
120 2jwn_A Embryonic polyadenylate 99.6 3.4E-15 1.2E-19 132.0 9.1 78 351-430 36-117 (124)
121 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.1E-15 3.7E-20 123.7 5.3 72 352-425 1-76 (77)
122 2cpx_A Hypothetical protein FL 99.6 2.9E-15 1E-19 130.5 8.5 83 348-431 22-108 (115)
123 2ki2_A SS-DNA binding protein 99.6 4.7E-16 1.6E-20 129.9 3.2 78 352-431 2-83 (90)
124 2krb_A Eukaryotic translation 99.6 1.7E-15 5.8E-20 124.7 6.5 72 351-423 1-81 (81)
125 2fc9_A NCL protein; structure 99.6 6.1E-15 2.1E-19 125.8 10.1 80 347-430 11-93 (101)
126 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.4E-20 135.4 6.5 81 348-431 22-105 (112)
127 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.7E-15 2E-19 137.7 9.6 83 349-432 70-156 (165)
128 2db1_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 133.0 7.0 79 349-429 15-99 (118)
129 2lea_A Serine/arginine-rich sp 99.6 2.1E-15 7.2E-20 137.0 6.2 83 349-432 45-131 (135)
130 2e44_A Insulin-like growth fac 99.6 7.6E-15 2.6E-19 123.9 9.2 79 349-428 13-92 (96)
131 2qfj_A FBP-interacting repress 99.6 1.2E-15 4.2E-20 144.5 4.8 81 349-430 123-207 (216)
132 1wf1_A RNA-binding protein RAL 99.6 5.1E-15 1.7E-19 128.6 8.2 76 349-429 25-101 (110)
133 2dnn_A RNA-binding protein 12; 99.6 6.4E-15 2.2E-19 130.1 8.8 75 351-428 16-93 (109)
134 1fj7_A Nucleolin RBD1, protein 99.6 1.5E-15 5.1E-20 129.6 4.3 79 349-430 15-97 (101)
135 2cq2_A Hypothetical protein LO 99.6 8.4E-15 2.9E-19 131.2 9.3 78 349-429 23-107 (114)
136 2hgl_A HNRPF protein, heteroge 99.6 3.4E-15 1.2E-19 137.0 6.8 80 348-429 41-126 (136)
137 1fjc_A Nucleolin RBD2, protein 99.6 6E-15 2.1E-19 124.5 7.7 80 349-430 14-93 (96)
138 2e5g_A U6 snRNA-specific termi 99.6 1.1E-14 3.8E-19 123.0 9.3 79 349-430 6-84 (94)
139 1wg1_A KIAA1579 protein, homol 99.5 9.7E-15 3.3E-19 122.2 8.5 76 350-429 4-79 (88)
140 1iqt_A AUF1, heterogeneous nuc 99.5 2.3E-15 8E-20 121.3 4.4 71 353-425 1-75 (75)
141 1wf0_A TDP-43, TAR DNA-binding 99.5 6.1E-15 2.1E-19 123.0 6.9 78 350-431 4-81 (88)
142 1wez_A HnRNP H', FTP-3, hetero 99.5 6.6E-15 2.3E-19 127.7 7.1 79 348-429 12-93 (102)
143 2lmi_A GRSF-1, G-rich sequence 99.5 2.8E-15 9.7E-20 130.2 4.8 80 348-429 8-93 (107)
144 1wel_A RNA-binding protein 12; 99.5 2.3E-15 8E-20 133.8 4.3 80 348-429 22-105 (124)
145 3egn_A RNA-binding protein 40; 99.5 7.1E-15 2.4E-19 133.4 7.6 85 348-433 42-135 (143)
146 1x5o_A RNA binding motif, sing 99.5 1.2E-14 4E-19 126.7 8.6 79 349-428 23-112 (114)
147 3q2s_C Cleavage and polyadenyl 99.5 5.4E-15 1.8E-19 146.0 6.9 79 350-429 67-151 (229)
148 2xs2_A Deleted in azoospermia- 99.5 4.9E-15 1.7E-19 126.6 5.7 80 350-432 8-90 (102)
149 1sjr_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 137.3 9.4 78 351-429 46-125 (164)
150 1fje_B Nucleolin RBD12, protei 99.5 3.8E-14 1.3E-18 130.5 11.1 79 349-429 97-175 (175)
151 3nmr_A Cugbp ELAV-like family 99.5 9.7E-15 3.3E-19 133.3 6.7 77 349-426 93-175 (175)
152 1b7f_A Protein (SXL-lethal pro 99.5 2.7E-14 9.1E-19 129.8 9.6 76 349-425 87-168 (168)
153 2hzc_A Splicing factor U2AF 65 99.5 3.1E-14 1.1E-18 117.6 9.0 72 349-424 4-86 (87)
154 3tyt_A Heterogeneous nuclear r 99.5 3.6E-14 1.2E-18 137.5 10.8 79 349-429 2-81 (205)
155 2fc8_A NCL protein; structure 99.5 3.3E-14 1.1E-18 121.3 9.1 80 347-430 11-94 (102)
156 1fxl_A Paraneoplastic encephal 99.5 1.9E-14 6.3E-19 130.2 7.8 76 349-425 86-167 (167)
157 2lcw_A RNA-binding protein FUS 99.3 1.2E-15 4.2E-20 133.7 0.0 82 349-431 5-98 (116)
158 2bz2_A Negative elongation fac 99.5 2.6E-14 8.8E-19 127.8 8.2 78 349-431 37-114 (121)
159 1b7f_A Protein (SXL-lethal pro 99.5 4.9E-14 1.7E-18 128.1 9.9 80 350-430 2-85 (168)
160 4f02_A Polyadenylate-binding p 99.5 4.4E-14 1.5E-18 136.0 10.0 81 349-430 13-97 (213)
161 1fxl_A Paraneoplastic encephal 99.5 6.7E-14 2.3E-18 126.5 10.6 79 351-430 2-84 (167)
162 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.5E-19 130.9 5.4 78 350-429 22-106 (123)
163 3md3_A Nuclear and cytoplasmic 99.5 4.8E-14 1.6E-18 127.4 8.8 78 352-430 1-81 (166)
164 3beg_B Splicing factor, argini 99.5 2.2E-14 7.4E-19 126.5 6.3 76 350-429 15-95 (115)
165 2f3j_A RNA and export factor b 99.5 6.1E-14 2.1E-18 133.3 9.6 83 347-430 84-169 (177)
166 2ghp_A U4/U6 snRNA-associated 99.5 1.1E-13 3.7E-18 138.2 11.9 81 347-429 206-292 (292)
167 2hgn_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 133.8 4.3 80 349-431 44-126 (139)
168 3zzy_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 126.0 10.8 76 352-429 29-107 (130)
169 2hgm_A HNRPF protein, heteroge 99.5 3.7E-14 1.3E-18 128.8 6.8 77 349-428 40-121 (126)
170 2e5i_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 125.2 10.1 74 353-429 27-103 (124)
171 3smz_A Protein raver-1, ribonu 99.5 9.9E-14 3.4E-18 137.9 10.0 83 349-432 182-268 (284)
172 2dnl_A Cytoplasmic polyadenyla 99.5 1.4E-13 4.6E-18 120.9 9.0 76 349-428 6-88 (114)
173 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.7E-18 128.6 9.5 81 349-430 112-196 (198)
174 1l3k_A Heterogeneous nuclear r 99.5 1.6E-13 5.5E-18 128.0 9.8 81 348-430 10-94 (196)
175 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 134.7 9.0 82 346-429 29-111 (229)
176 2pe8_A Splicing factor 45; RRM 99.4 2.8E-13 9.5E-18 118.8 10.1 80 348-427 5-93 (105)
177 3pgw_S U1-70K; protein-RNA com 99.4 2.5E-13 8.5E-18 146.2 11.8 82 348-430 99-184 (437)
178 2g4b_A Splicing factor U2AF 65 99.4 1.5E-13 5E-18 125.7 8.4 77 349-426 92-172 (172)
179 2dit_A HIV TAT specific factor 99.4 4.7E-13 1.6E-17 117.2 11.2 83 347-430 11-104 (112)
180 3pgw_A U1-A; protein-RNA compl 99.4 3.5E-13 1.2E-17 133.9 11.4 82 348-430 6-92 (282)
181 2diu_A KIAA0430 protein; struc 99.4 1.9E-13 6.4E-18 119.0 8.1 80 348-434 5-90 (96)
182 2qfj_A FBP-interacting repress 99.4 2.6E-13 9E-18 128.4 9.6 81 351-432 28-112 (216)
183 2adc_A Polypyrimidine tract-bi 99.4 5.5E-13 1.9E-17 129.8 12.0 79 348-428 148-228 (229)
184 2voo_A Lupus LA protein; RNA-b 99.4 3.1E-13 1.1E-17 130.0 10.0 76 351-428 109-187 (193)
185 1qm9_A Polypyrimidine tract-bi 99.4 4.9E-13 1.7E-17 125.9 11.1 79 348-428 117-197 (198)
186 3nmr_A Cugbp ELAV-like family 99.4 2.9E-13 1E-17 123.5 8.2 79 350-429 2-89 (175)
187 2cjk_A Nuclear polyadenylated 99.4 3.3E-13 1.1E-17 122.8 8.0 77 350-429 2-82 (167)
188 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.3E-18 128.3 6.7 78 350-429 2-80 (198)
189 3pgw_A U1-A; protein-RNA compl 99.4 8.5E-13 2.9E-17 131.0 11.3 78 347-426 203-281 (282)
190 3sde_A Paraspeckle component 1 99.4 5.1E-13 1.8E-17 132.6 8.9 79 350-429 95-180 (261)
191 2j8a_A Histone-lysine N-methyl 99.4 8.1E-13 2.8E-17 121.3 7.1 74 352-425 3-93 (136)
192 2yh0_A Splicing factor U2AF 65 99.3 2.1E-12 7.2E-17 120.6 9.6 77 349-429 2-89 (198)
193 2g4b_A Splicing factor U2AF 65 99.3 2.4E-12 8.3E-17 117.5 9.6 76 350-429 3-89 (172)
194 3sde_A Paraspeckle component 1 99.3 2.4E-12 8.2E-17 127.8 9.9 79 348-429 19-97 (261)
195 1fje_B Nucleolin RBD12, protei 99.3 1.1E-12 3.9E-17 120.5 6.8 82 347-430 9-93 (175)
196 3v4m_A Splicing factor U2AF 65 99.3 4.4E-12 1.5E-16 111.0 8.9 80 349-428 3-97 (105)
197 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4E-16 107.9 11.0 80 348-430 7-92 (100)
198 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.7E-17 114.5 3.7 69 356-425 20-103 (104)
199 3smz_A Protein raver-1, ribonu 99.3 8.6E-12 2.9E-16 123.9 10.3 81 349-430 93-177 (284)
200 3s6e_A RNA-binding protein 39; 99.2 1.4E-11 4.6E-16 110.0 8.8 80 349-428 5-93 (114)
201 2ghp_A U4/U6 snRNA-associated 99.2 1.1E-11 3.7E-16 123.7 9.1 80 350-430 116-199 (292)
202 3tyt_A Heterogeneous nuclear r 99.2 6.8E-12 2.3E-16 121.5 7.3 77 348-425 120-204 (205)
203 3tht_A Alkylated DNA repair pr 99.2 2.2E-11 7.6E-16 127.7 10.7 79 346-426 13-97 (345)
204 3ue2_A Poly(U)-binding-splicin 99.2 1.3E-11 4.3E-16 110.7 7.3 79 349-427 18-108 (118)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 1.7E-09 5.9E-14 93.3 9.1 78 346-428 2-86 (91)
206 1ufw_A Synaptojanin 2; RNP dom 98.7 2.7E-08 9.2E-13 86.4 7.0 76 345-426 9-93 (95)
207 1owx_A Lupus LA protein, SS-B, 98.6 1.3E-07 4.3E-12 85.6 8.7 76 348-426 15-94 (121)
208 3dxb_A Thioredoxin N-terminall 98.6 5.3E-08 1.8E-12 94.1 6.1 64 364-427 141-212 (222)
209 2dhx_A Poly (ADP-ribose) polym 97.3 0.0013 4.4E-08 58.0 9.8 74 350-429 7-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.2 0.0013 4.4E-08 58.7 8.6 74 351-427 21-99 (117)
211 1wwh_A Nucleoporin 35, nucleop 96.2 0.017 5.7E-07 52.1 8.8 74 351-429 24-98 (119)
212 1wey_A Calcipressin 1; structu 96.1 0.0083 2.8E-07 52.8 6.0 76 351-428 5-84 (104)
213 2d9n_A Cleavage and polyadenyl 96.0 0.0026 8.9E-08 52.7 2.4 25 190-214 8-32 (77)
214 2rhk_C Cleavage and polyadenyl 95.7 0.0021 7E-08 52.9 0.5 24 191-214 15-38 (72)
215 2d9m_A Zinc finger CCCH-type d 95.3 0.0039 1.3E-07 51.1 0.9 23 192-214 20-42 (69)
216 3p3d_A Nucleoporin 53; structu 95.3 0.014 4.8E-07 53.4 4.5 62 365-427 19-98 (132)
217 2cqe_A KIAA1064 protein; CCCH 95.3 0.0056 1.9E-07 53.1 1.8 23 192-214 13-35 (98)
218 1m9o_A Tristetraproline; Cys3H 94.9 0.0095 3.2E-07 48.6 2.0 26 189-214 9-35 (77)
219 3d2q_A Muscleblind-like protei 94.9 0.0068 2.3E-07 49.3 1.0 23 192-214 6-29 (70)
220 1i2t_A HYD protein; four alpha 94.6 0.014 4.7E-07 46.8 2.2 51 8-61 7-57 (61)
221 2cqe_A KIAA1064 protein; CCCH 94.6 0.0095 3.2E-07 51.7 1.2 23 192-214 36-59 (98)
222 1ifw_A Polyadenylate-binding p 94.5 0.021 7.2E-07 49.2 3.1 52 8-62 26-79 (92)
223 1m9o_A Tristetraproline; Cys3H 94.4 0.0068 2.3E-07 49.5 0.0 24 191-214 49-73 (77)
224 3d2q_A Muscleblind-like protei 94.4 0.011 3.8E-07 48.0 1.1 23 191-214 41-63 (70)
225 3d2n_A Muscleblind-like protei 94.1 0.017 5.9E-07 48.7 1.8 23 192-214 9-32 (83)
226 3pq1_A Poly(A) RNA polymerase; 93.6 0.027 9.2E-07 61.3 2.5 56 351-409 53-108 (464)
227 2e5s_A Otthump00000018578; ZF- 93.5 0.018 6E-07 50.1 0.8 24 190-214 54-77 (98)
228 2dyd_A Poly(A)-binding protein 93.2 0.025 8.7E-07 48.1 1.3 52 8-62 28-79 (85)
229 1g9l_A Polyadenylate-binding p 93.2 0.038 1.3E-06 51.2 2.5 52 9-63 73-124 (144)
230 1nmr_A Poly(A)-binding protein 93.1 0.034 1.2E-06 47.3 1.9 52 8-62 29-80 (85)
231 2kn4_A Immunoglobulin G-bindin 92.9 0.045 1.5E-06 49.3 2.5 42 381-422 2-45 (158)
232 3kuj_A Polyadenylate-binding p 92.7 0.056 1.9E-06 46.3 2.7 51 8-61 26-76 (88)
233 3d2n_A Muscleblind-like protei 92.7 0.031 1.1E-06 47.2 1.0 23 191-214 42-64 (83)
234 2rpp_A Muscleblind-like protei 92.6 0.029 1E-06 48.0 0.9 23 192-214 17-40 (89)
235 2e5s_A Otthump00000018578; ZF- 92.6 0.014 4.9E-07 50.7 -1.2 23 192-214 20-43 (98)
236 3ctr_A Poly(A)-specific ribonu 91.0 0.22 7.4E-06 43.6 4.5 54 352-411 7-60 (101)
237 2d9n_A Cleavage and polyadenyl 90.9 0.056 1.9E-06 44.6 0.7 22 192-214 38-60 (77)
238 1whv_A Poly(A)-specific ribonu 90.9 0.38 1.3E-05 42.0 5.9 54 351-410 16-69 (100)
239 1uw4_A UPF3X; nonsense mediate 90.2 0.85 2.9E-05 39.0 7.5 65 352-417 2-72 (91)
240 2rhk_C Cleavage and polyadenyl 90.2 0.063 2.2E-06 43.9 0.4 22 192-214 44-66 (72)
241 2i2y_A Fusion protein consists 89.3 0.13 4.6E-06 46.0 1.9 42 388-430 11-53 (150)
242 2rpp_A Muscleblind-like protei 89.0 0.1 3.5E-06 44.6 0.8 23 191-214 50-72 (89)
243 2fc6_A Nuclear, target of EGR1 75.9 0.61 2.1E-05 35.8 0.2 25 190-214 18-43 (50)
244 4f25_A Polyadenylate-binding p 72.2 0.85 2.9E-05 39.1 0.3 20 348-368 94-113 (115)
245 2l08_A Regulator of nonsense t 70.7 6.2 0.00021 34.1 5.4 66 351-417 9-80 (97)
246 3v33_A Ribonuclease ZC3H12A; r 68.2 1.1 3.8E-05 44.3 0.1 25 188-214 188-212 (223)
247 3u9g_A Zinc finger CCCH-type a 60.1 2.8 9.5E-05 41.5 1.2 23 191-214 174-196 (229)
248 3d45_A Poly(A)-specific ribonu 58.5 17 0.00058 39.6 7.3 56 351-412 440-495 (507)
249 3u9g_A Zinc finger CCCH-type a 36.7 11 0.00036 37.4 1.1 25 190-214 87-115 (229)
250 2rnl_A Amphiregulin; AR, color 29.4 13 0.00045 28.2 0.3 21 193-214 10-30 (50)
251 3e50_C Protransforming growth 27.7 14 0.00049 28.0 0.3 22 192-214 5-26 (50)
252 3dve_B Voltage-dependent N-typ 25.0 13 0.00044 24.2 -0.3 14 21-34 1-14 (23)
253 3dvk_B Voltage-dependent R-typ 23.3 14 0.0005 24.0 -0.3 14 21-34 2-15 (23)
254 2g0c_A ATP-dependent RNA helic 21.9 1.3E+02 0.0043 23.6 4.9 69 353-426 2-75 (76)
255 1mm0_A Termicin; termite, cyte 21.6 11 0.00038 26.9 -1.2 18 196-214 17-34 (36)
256 3ts2_A Protein LIN-28 homolog 20.3 20 0.0007 32.8 -0.2 28 367-398 2-29 (148)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.90 E-value=2.3e-24 Score=215.84 Aligned_cols=96 Identities=18% Similarity=0.308 Sum_probs=75.0
Q ss_pred ccccCCCCCCCCCCCCCCCeEEEcCCCCCCC---------CHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHH
Q 007997 334 YLEYSGEKSDPGGIVAGSRQIYLTFPAESTF---------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVK 404 (582)
Q Consensus 334 ~~~~r~dr~d~~~~~~~~rtIyVg~L~~~~~---------TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~ 404 (582)
+..++.++.+.+.....++|||||+| ++.+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|+
T Consensus 117 ~~~~~d~~~g~gs~~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae 193 (240)
T 3u1l_A 117 FADYREDMGGIGSFRKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAE 193 (240)
T ss_dssp GGGTC---------CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHH
T ss_pred cccchhcccCcCccccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHH
Confidence 34445555555666778999999999 7777 7999999999999999999998 8999999999999999
Q ss_pred HHHHhcCCceE------------cCeEEEEeeccccccch
Q 007997 405 QILAKGNPHFV------------CGARVLVKPYREKSRLV 432 (582)
Q Consensus 405 ~Al~~mn~~~i------------~Gr~V~Vk~Ak~K~k~~ 432 (582)
.|++.|++..| +|+.|.|+||+++....
T Consensus 194 ~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 194 FAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp HHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred HHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCHH
Confidence 99999999999 99999999999876543
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=9.7e-18 Score=147.78 Aligned_cols=82 Identities=21% Similarity=0.461 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
.+.+|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|+|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3568999999 899999999999999999999999986 5689999999999999999999999999999999999988
Q ss_pred cccch
Q 007997 428 KSRLV 432 (582)
Q Consensus 428 K~k~~ 432 (582)
+....
T Consensus 83 ~~~~~ 87 (115)
T 4f25_A 83 RKERE 87 (115)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 76543
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=142.78 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+|+
T Consensus 19 gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 468999999 899999999999999999999999985 578999999999999999999999999999999999997
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=143.36 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
++.++|||+|| ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 899999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+..+.+
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976544
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=141.24 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcC-CceEcCeEEEEee
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGN-PHFVCGARVLVKP 424 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn-~~~i~Gr~V~Vk~ 424 (582)
+++|||+|| ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.++ +..|+|+.|+|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 469999999 89999999999999999 8999999986 689999999999999999999874 5679999999999
Q ss_pred ccccccc
Q 007997 425 YREKSRL 431 (582)
Q Consensus 425 Ak~K~k~ 431 (582)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.2e-17 Score=160.97 Aligned_cols=84 Identities=19% Similarity=0.438 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
..++|||+|| ++.+|+++|+++|++||+|++|+|++| .+||||||+|.+.++|++|++.||+..|+|+.|+|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3569999999 899999999999999999999999986 5799999999999999999999999999999999999998
Q ss_pred cccchhh
Q 007997 428 KSRLVDR 434 (582)
Q Consensus 428 K~k~~~r 434 (582)
+.+....
T Consensus 181 ~~~~~~~ 187 (213)
T 4f02_A 181 RKEREAE 187 (213)
T ss_dssp HHHHHHH
T ss_pred Ccccchh
Confidence 7654433
No 7
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=9.2e-17 Score=132.36 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...+..++|||+|| ++++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 2 ~~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 2 SMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp -CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34567889999999 899999999999999999999999875 5799999999999999999999999999999999
Q ss_pred Eeecc
Q 007997 422 VKPYR 426 (582)
Q Consensus 422 Vk~Ak 426 (582)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=135.28 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 899999999999999999999999985 578999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987653
No 9
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=134.90 Aligned_cols=86 Identities=21% Similarity=0.297 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
......++|||+|| ++++|+++|+++|++||+|.+|+|+++ .++|||||+|.+.++|++|++.|+++.|+|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456789999999 899999999999999999999999986 569999999999999999999999999999999999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999876543
No 10
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=134.69 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.....++|||++| ++.+|+++|+++|++||+|.+|+|+++ .+||||||+|.+.++|++|++.|++..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999 899999999999999999999999986 5789999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 998654
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=132.95 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35679999999 889999999999999999999999985 4689999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+++|+
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98763
No 12
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.2e-16 Score=131.07 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
+.+|||+|| ++++++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..++|+.|+|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 358999999 899999999999999999999999975 569999999999999999999999999999999999999
Q ss_pred ccc
Q 007997 427 EKS 429 (582)
Q Consensus 427 ~K~ 429 (582)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=135.33 Aligned_cols=84 Identities=27% Similarity=0.384 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
......++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++ |+++.|+|+.|+
T Consensus 5 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 5 SSGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 34456789999999 899999999999999999999999985 579999999999999999999 899999999999
Q ss_pred Eeeccccccc
Q 007997 422 VKPYREKSRL 431 (582)
Q Consensus 422 Vk~Ak~K~k~ 431 (582)
|.+++++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999987654
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=136.76 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
......++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 7 GMATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CSCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 44567889999999 899999999999999999999999885 5799999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 007997 422 VKPYREKSRL 431 (582)
Q Consensus 422 Vk~Ak~K~k~ 431 (582)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2cqb_A 86 VNLAKPMRIK 95 (102)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=131.49 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...+..++|||+|| ++.+++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 11 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44567889999999 899999999999999999999999985 5799999999999999999999999999999999
Q ss_pred Eeecc
Q 007997 422 VKPYR 426 (582)
Q Consensus 422 Vk~Ak 426 (582)
|.+|+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.8e-16 Score=133.20 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
++++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 3679999999 899999999999999999999999986 56999999999999999999999999999999999999
Q ss_pred cccccchhh
Q 007997 426 REKSRLVDR 434 (582)
Q Consensus 426 k~K~k~~~r 434 (582)
.++......
T Consensus 80 ~~~~~~~~~ 88 (96)
T 2x1f_A 80 SNSDISGVS 88 (96)
T ss_dssp SCSSGGGHH
T ss_pred CCCCCCCcc
Confidence 998765443
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=135.98 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3456789999999 899999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccccccc
Q 007997 423 KPYREKSRL 431 (582)
Q Consensus 423 k~Ak~K~k~ 431 (582)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999987653
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=134.54 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.|+++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 899999999999999999999999985 57999999999999999999999999999999999
Q ss_pred eeccccccc
Q 007997 423 KPYREKSRL 431 (582)
Q Consensus 423 k~Ak~K~k~ 431 (582)
.+++++.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887653
No 19
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=130.28 Aligned_cols=79 Identities=11% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccC-----CCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ-----KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~-----sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.++ ++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4579999999 8999999999999999999999999863 899999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=135.19 Aligned_cols=84 Identities=15% Similarity=0.245 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcC------CceEc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGN------PHFVC 416 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn------~~~i~ 416 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|| ++.|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3456789999999 899999999999999999999999986 579999999999999999999999 99999
Q ss_pred CeEEEEeeccccccc
Q 007997 417 GARVLVKPYREKSRL 431 (582)
Q Consensus 417 Gr~V~Vk~Ak~K~k~ 431 (582)
|+.|+|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999987654
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=132.86 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999 899999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++++..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 988764
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=133.82 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEE-Eeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~V-rI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
...++|||+|| ++++|+++|+++|++||+|.+| +|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35689999999 8999999999999999999999 99885 579999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99987654
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=136.25 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 10 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 455789999999 899999999999999999999999985 579999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99876543
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=133.02 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....+|||+|| ++++++++|+ ++|++||+|.+|+|+.+ ..||||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 7 ~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44679999999 8999999999 99999999999999986 239999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987653
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=140.26 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V~Vk~A 425 (582)
.+..++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|+.|++.++ +..|+|+.|+|.++
T Consensus 13 ~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456789999999 89999999999999999999999998 58999999999999999999775 47999999999999
Q ss_pred cccccch
Q 007997 426 REKSRLV 432 (582)
Q Consensus 426 k~K~k~~ 432 (582)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8875443
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.7e-16 Score=134.21 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.....++|||+|| ++++|+++|+++|++||+|++|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 18 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456789999999 899999999999999999999999886 57999999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+++.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 88754
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=3e-16 Score=135.00 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
...+..|||||| ++.+||++|+++|.+||+|.+++|.. +||||||+|.+.++|++|++.||+..++||.|+|+.|.
T Consensus 4 ~~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 345779999999 99999999999999999999999988 99999999999999999999999999999999999994
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=133.49 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 14 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 355789999999 899999999999999999999999985 5689999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=134.72 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...+..++|||++| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 7 ~~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 7 GMASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44567889999999 899999999999999999999999985 5799999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 007997 422 VKPYREKSRL 431 (582)
Q Consensus 422 Vk~Ak~K~k~ 431 (582)
|.+++++...
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999887643
No 30
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=134.00 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+..++|||+|| ++++|+++|+++|++||+|. ++|+.++++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 15 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3455789999999 89999999999999999997 788888899999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++.+
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.6e-16 Score=135.28 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++.+|+++|+++|++||.|.+|+|+++ +++|||||+|.+.++|++|++.|+++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 899999999999999999999999985 46899999999999999999999999999999999
Q ss_pred eeccccccch
Q 007997 423 KPYREKSRLV 432 (582)
Q Consensus 423 k~Ak~K~k~~ 432 (582)
.+++++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876543
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=130.15 Aligned_cols=80 Identities=26% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 889999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccc
Q 007997 423 KPYRE 427 (582)
Q Consensus 423 k~Ak~ 427 (582)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99874
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=132.25 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||++.|+|+.|+
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45689999999 899999999999999999999999974 4589999999999999999999999999999999
Q ss_pred Eeeccccccc
Q 007997 422 VKPYREKSRL 431 (582)
Q Consensus 422 Vk~Ak~K~k~ 431 (582)
|.+++++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887543
No 34
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-16 Score=127.06 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhc-CCceEcCeEEEEeecc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYR 426 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~m-n~~~i~Gr~V~Vk~Ak 426 (582)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|++ +||||||+|.+.++|+.|++.| ++..++|+.|+|.+++
T Consensus 9 ~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999 88999999999999999999999998 7999999999999999999999 9999999999999975
No 35
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=3.8e-16 Score=138.66 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...+...+|||+|| ++++|+++|+++|++|| +|..|+|+.+++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 23 ~~p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 23 KLPAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp --CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 33455679999999 89999999999999999 99999998777999999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+..++
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87553
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=134.26 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346789999999 899999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
+++.+.
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 37
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=2.7e-16 Score=137.52 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..+..++|||+|| ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 899999999999999999999999985 56899999999999999999999999999999999
Q ss_pred eeccccccc
Q 007997 423 KPYREKSRL 431 (582)
Q Consensus 423 k~Ak~K~k~ 431 (582)
.+++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999987653
No 38
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=136.42 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
......++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456789999999 899999999999999999999999986 579999999999999999999999999999999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 39
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=7.3e-17 Score=138.84 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCC------CCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcC-eE
Q 007997 351 SRQIYLTFPAES------TFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG-AR 419 (582)
Q Consensus 351 ~rtIyVg~L~~~------~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G-r~ 419 (582)
.++|||+|| ++ ++++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+| +.
T Consensus 6 ~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 579999999 78 9999999999999999999999986 579999999999999999999999999999 99
Q ss_pred EEEeecccccc
Q 007997 420 VLVKPYREKSR 430 (582)
Q Consensus 420 V~Vk~Ak~K~k 430 (582)
|+|.+|.++.+
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987654
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=5e-16 Score=133.27 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcC---eEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCG---ARV 420 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G---r~V 420 (582)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456789999999 899999999999999999999999986 558999999999999999999999999998 999
Q ss_pred EEeeccccccc
Q 007997 421 LVKPYREKSRL 431 (582)
Q Consensus 421 ~Vk~Ak~K~k~ 431 (582)
+|.+++++.+.
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999987654
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=137.05 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCC--EeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCc----eEcCeE
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCGAR 419 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~--V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~----~i~Gr~ 419 (582)
.-.||||+|| ++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++.||+. .|+||+
T Consensus 8 ~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 3469999999 899999999999999995 679999986 68999999999999999999999875 699999
Q ss_pred EEEeeccc
Q 007997 420 VLVKPYRE 427 (582)
Q Consensus 420 V~Vk~Ak~ 427 (582)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=132.65 Aligned_cols=84 Identities=20% Similarity=0.379 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhc-CCceEcCeEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARV 420 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~m-n~~~i~Gr~V 420 (582)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.| |+..|+|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3456789999999 899999999999999999999999875 46999999999999999999999 9999999999
Q ss_pred EEeeccccccc
Q 007997 421 LVKPYREKSRL 431 (582)
Q Consensus 421 ~Vk~Ak~K~k~ 431 (582)
+|.+++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999987653
No 43
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=7.2e-17 Score=135.75 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCC--CEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+|||+|| ++++|+++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 38999999 89999999999999999 9999999986 67999999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
.++...
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 887543
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.2e-16 Score=133.96 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|+.|++.||+..|+|+.|+|.+
T Consensus 24 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45689999999 899999999999999999999999875 5699999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 988754
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=137.47 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...++|||+|| ++++|+++|+++|++||+|.+|+|++| ++||||||+|.+.++|+.|++ ++++.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34689999999 899999999999999999999999985 689999999999999999999 7999999999999987
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
.+.
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 763
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=134.38 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45679999999 899999999999999999999999985 4689999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988753
No 47
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.2e-16 Score=133.04 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
+..++|||+|| ++++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|.+|++.||+..|+|+.|+|.++++|
T Consensus 25 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 44689999999 89999999999999999999999996 8999999999999999999999999999999999999875
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=4.8e-16 Score=131.31 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.+..++|||+|| ++++++++|+ ++|++||+|.+|+|+.. +++|||||+|.+.++|+.|++.|++..|+|+.|+|
T Consensus 5 ~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356789999999 8999999999 99999999999999853 67999999999999999999999999999999999
Q ss_pred eeccccccchh
Q 007997 423 KPYREKSRLVD 433 (582)
Q Consensus 423 k~Ak~K~k~~~ 433 (582)
.+++++.+...
T Consensus 84 ~~a~~~~~~~~ 94 (97)
T 1nu4_A 84 QYAKTDSDIIA 94 (97)
T ss_dssp EECSSCCTHHH
T ss_pred EEccCCCcccc
Confidence 99999876543
No 49
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.5e-16 Score=133.39 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3456789999999 899999999999999999999999986 568999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9876543
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=5.7e-16 Score=133.15 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceE---cCeE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV---CGAR 419 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i---~Gr~ 419 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..+ +|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999 899999999999999999999999985 5799999999999999999999999988 9999
Q ss_pred EEEeecccccc
Q 007997 420 VLVKPYREKSR 430 (582)
Q Consensus 420 V~Vk~Ak~K~k 430 (582)
|+|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999988754
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=131.69 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC-----eEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-----ARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G-----r~V~Vk 423 (582)
....+|||+|| ++++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.||+..|+| +.|+|.
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 34679999999 899999999999999999999999985 999999999999999999999999999 999999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (108)
T 1x4c_A 89 VDGPRSPSY 97 (108)
T ss_dssp ESSCCSCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=4.4e-16 Score=130.32 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999 899999999999999999999999975 57999999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 88654
No 53
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=134.93 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCc--eEcCeEEEEe
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPH--FVCGARVLVK 423 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~--~i~Gr~V~Vk 423 (582)
...+++++|||+|| ++++|+++|+++|++||+|.+|+|++ .||||||+|.+.++|.+|++.|++. .|+|++|.|.
T Consensus 16 ~~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 16 HKTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp -CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred ccCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34567899999999 89999999999999999999999997 7999999999999999999998865 4889999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
+++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998763
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=133.07 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. +++.|+|+.|+|.
T Consensus 13 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 13 ADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp SSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999 899999999999999999999999986 5689999999999999999999 9999999999999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 999886543
No 55
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=128.90 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|+|.++++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456789999999 8999999999999999999999997 79999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 428 KSRL 431 (582)
Q Consensus 428 K~k~ 431 (582)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=8.3e-16 Score=127.65 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .|++..|+|+.|+|.+++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 479999999 899999999999999999999999985 57999999999999999999 899999999999999987
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 57
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=135.14 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHH---HHhhcCCCEeEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVS---NYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr---~~FsqFG~V~~VrI~~D-------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
...++|||+|| ++++++++|+ ++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 45679999999 8999999999 99999999999999975 3569999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 007997 419 RVLVKPYREKS 429 (582)
Q Consensus 419 ~V~Vk~Ak~K~ 429 (582)
.|+|.+|.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999885
No 58
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-15 Score=138.11 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..++|+.|+|
T Consensus 83 ~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 3455779999999 899999999999999999999999875 57999999999999999999999999999999999
Q ss_pred eeccc
Q 007997 423 KPYRE 427 (582)
Q Consensus 423 k~Ak~ 427 (582)
.+|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99864
No 59
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=133.63 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhc--CCceEcCeEEEEee
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG--NPHFVCGARVLVKP 424 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~m--n~~~i~Gr~V~Vk~ 424 (582)
..+++++|||+|| ++++||++|+++|++||.|.+|+|++ .||||||+|.+.++|+.|++.| ++..|+|+.|+|.+
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3456789999999 89999999999999999999999998 5999999999999999999976 57889999999999
Q ss_pred ccccccc
Q 007997 425 YREKSRL 431 (582)
Q Consensus 425 Ak~K~k~ 431 (582)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9876543
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=130.10 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....++|||+|| ++.+++++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.+
T Consensus 13 ~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345789999999 899999999999999999999999986 5689999999999999999999999999999999999
Q ss_pred ccc
Q 007997 425 YRE 427 (582)
Q Consensus 425 Ak~ 427 (582)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 61
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=140.42 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.++.++|||+|| ++.+++++|+ ++|++||+|.+|.|... ++||||||+|.+.++|..|++.||+..|+|+.|+|
T Consensus 26 ~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 355789999999 8999999876 69999999999999764 78999999999999999999999999999999999
Q ss_pred eeccccccchhh
Q 007997 423 KPYREKSRLVDR 434 (582)
Q Consensus 423 k~Ak~K~k~~~r 434 (582)
.+++.+.....+
T Consensus 105 ~~a~~~~~~~~~ 116 (127)
T 2a3j_A 105 TFSETPQSQVAE 116 (127)
T ss_dssp EECCCCCHHHHC
T ss_pred EEccCcchhccc
Confidence 999988765543
No 62
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=129.99 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc--CeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC--GARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~--Gr~V~Vk~A 425 (582)
.+..++|||++| ++++|+++|+++|++||+|++|+|+. .||||||+|.+.++|++|++.||+..|+ |+.|+|.++
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeC--CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 355789999999 88999999999999999999999998 5999999999999999999999999999 999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=133.06 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+ ++.|+|+.|+|.
T Consensus 22 ~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 22 GSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp ----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 355789999999 899999999999999999999999985 57999999999999999999996 599999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9998764
No 64
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.3e-15 Score=130.80 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.|+++.|+|+.|+|.++++
T Consensus 8 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 356789999999 8899999999999999999999986 67999999999999999999999999999999999998
Q ss_pred cccch
Q 007997 428 KSRLV 432 (582)
Q Consensus 428 K~k~~ 432 (582)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.9e-16 Score=135.70 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC--ceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~--~~i~Gr~V~Vk~ 424 (582)
..+.++|||+|| ++ ++||++|+++|++||+|.+|+|++ .||||||+|.+.++|..|++.|++ ..|+|+.|.|.+
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 346789999999 88 999999999999999999999998 679999999999999999998874 569999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=130.69 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEe-EEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeE---
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--- 419 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~-~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~--- 419 (582)
....++|||+|| ++++|+++|+++|++||+|. +|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999 89999999999999999999 9999986 56899999999999999999999999999999
Q ss_pred -EEEeeccccc
Q 007997 420 -VLVKPYREKS 429 (582)
Q Consensus 420 -V~Vk~Ak~K~ 429 (582)
|+|.++++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998764
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=131.59 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||++| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.+++ .|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 456789999999 899999999999999999999999985 5799999999999999999999997 8999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++.+
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9987644
No 68
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=139.38 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CceEcCeEEEEe
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVK 423 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V~Vk 423 (582)
...+++++|||+|| ++++||++|+++|++||+|++|+|++ .||||||+|.+.++|.+|++.++ +..|+|+.|+|.
T Consensus 26 ~~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~--~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 26 SAGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEG--GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34566889999999 89999999999999999999999998 58999999999999999999887 468999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+++++...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99877543
No 69
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=137.15 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++++|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 38 ~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 899999999999999999999999986 46999999999999999999999999999999999
Q ss_pred eeccccccch
Q 007997 423 KPYREKSRLV 432 (582)
Q Consensus 423 k~Ak~K~k~~ 432 (582)
.+++++.+..
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=130.56 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+..++|||++| ++.+|+++|+++|++||+|.+|+|++ .||||||+|.+.++|++|++.|+++.|+|+.|+|.+++
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3466789999999 89999999999999999999999997 79999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 71
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.7e-15 Score=125.68 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. +++.|+|+.|.|+
T Consensus 8 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEE
Confidence 356789999999 899999999999999999999999985 5699999999999999999976 8899999999999
Q ss_pred ec
Q 007997 424 PY 425 (582)
Q Consensus 424 ~A 425 (582)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 72
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=132.04 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+. .||||||+|.+.++|.+|++.|++..|+|+.|+|.+++++
T Consensus 23 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFP--EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45679999999 89999999999999999999999998 4999999999999999999999999999999999999987
Q ss_pred ccc
Q 007997 429 SRL 431 (582)
Q Consensus 429 ~k~ 431 (582)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 73
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2e-15 Score=129.33 Aligned_cols=79 Identities=15% Similarity=0.352 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 346 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...+..++|||+|| ++ ++++++|+++|++||+|.+|+| +||||||+|.+.++|++|++.||+..++|+.|+|.+
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567889999999 77 9999999999999999999999 489999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 74
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=129.18 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=64.2
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+...+||||+| ++++||++|+++|++||+|.+|+|+++ +||||||+|.+.++|+++.. ..+.++|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEEcC
Confidence 3456779999999 899999999999999999999999985 89999999999999985322 2345679999999999
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8764
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=135.29 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 44679999999 899999999999999999999999985 57899999999999999999999999999999999999
Q ss_pred cccccch
Q 007997 426 REKSRLV 432 (582)
Q Consensus 426 k~K~k~~ 432 (582)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 9876543
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.5e-16 Score=132.57 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| ++.+++++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4579999999 899999999999999999999999975 45899999999999999999999999999999999999
Q ss_pred cccccchhh
Q 007997 426 REKSRLVDR 434 (582)
Q Consensus 426 k~K~k~~~r 434 (582)
.++......
T Consensus 86 ~~~~~~~~~ 94 (104)
T 1p1t_A 86 ASEKNKEEL 94 (104)
T ss_dssp TCTTHHHHH
T ss_pred CCccchhhh
Confidence 988765443
No 77
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.9e-15 Score=129.69 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++|| |.+|+|+++ ++||||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345789999999 89999999999999997 999999986 46899999999999999999 899999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9988754
No 78
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.6e-15 Score=132.96 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 37 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 899999999999999999999999885 569999999999999999999999999999999999
Q ss_pred ecc
Q 007997 424 PYR 426 (582)
Q Consensus 424 ~Ak 426 (582)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1e-15 Score=138.20 Aligned_cols=82 Identities=27% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..+..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999 899999999999999999999999985 67999999999999999999999999999999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.+++++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998865
No 80
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=132.58 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEe--------EEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--------DVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 416 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~--------~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~ 416 (582)
...++|||+|| ++++|+++|+++|++||.|. .|+|+.+ ++||||||+|.+.++|++|++.||++.|+
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999 89999999999999999999 6999886 57999999999999999999999999999
Q ss_pred CeEEEEeeccccccc
Q 007997 417 GARVLVKPYREKSRL 431 (582)
Q Consensus 417 Gr~V~Vk~Ak~K~k~ 431 (582)
|+.|+|.+++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987654
No 81
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.5e-16 Score=134.26 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC--ceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP--HFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~--~~i~Gr~V~Vk~A 425 (582)
.+++++|||+|| ++++||++|+++|++||+|.+|+|++ .||||||+|.+.++|.+|++.|++ ..|+|+.|+|.++
T Consensus 12 ~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456789999999 89999999999999999999999998 699999999999999999998754 5699999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+.+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87654
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=142.55 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC--CEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
..++|||+|| ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 89999999999999999 9999999986 579999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9987643
No 83
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=133.84 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...+..++|||+|| ++.+|+++|+++|++||+|++|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566889999999 889999999999999999999999885 5799999999999999999999999999999999
Q ss_pred Eeec
Q 007997 422 VKPY 425 (582)
Q Consensus 422 Vk~A 425 (582)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=1.3e-15 Score=132.96 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
+..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..++|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999 899999999999999999999999986 6799999999999999999999999999999999999986
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=134.09 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.+..++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 889999999999999999999999985 568999999999999999999999999999999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998875
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.8e-15 Score=132.95 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 346 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
......++|||+|| ++.+++++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999 899999999999999999999999986 58999999999999999999999999999999999
Q ss_pred eeccccccc
Q 007997 423 KPYREKSRL 431 (582)
Q Consensus 423 k~Ak~K~k~ 431 (582)
.+|.++...
T Consensus 109 ~~a~~~~~~ 117 (124)
T 2kt5_A 109 QLVASQIDL 117 (124)
T ss_dssp EEECCTTCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 87
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=131.12 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCC------CHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCe-EE
Q 007997 350 GSRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RV 420 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~------TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr-~V 420 (582)
..++|||+|| ++.+ |+++|+++|++||+|.+|+|+.. ++||||||+|.+.++|++|+..||+..|+|+ .|
T Consensus 14 ~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 3679999999 7888 78999999999999999999853 6899999999999999999999999999999 99
Q ss_pred EEeecccccc
Q 007997 421 LVKPYREKSR 430 (582)
Q Consensus 421 ~Vk~Ak~K~k 430 (582)
+|.++.+..+
T Consensus 93 ~V~~a~~~~k 102 (105)
T 2nlw_A 93 RVNLFTDFDK 102 (105)
T ss_dssp EEECSCCCCC
T ss_pred EEEEcchHhh
Confidence 9999987654
No 88
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.1e-16 Score=133.94 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|+ .||++.|+|+.|+|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3579999999 899999999999999999999999975 57999999999999999999 89999999999999998
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87643
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=130.11 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhcCCce
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHF 414 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~ 414 (582)
..+...+|||+|| ++++|+++|+++|++||.|.+ |+|+++ ++||||||+|.+.++|++|++.||+..
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4456789999999 899999999999999999999 999886 568999999999999999999999999
Q ss_pred EcCeEEEEeecc
Q 007997 415 VCGARVLVKPYR 426 (582)
Q Consensus 415 i~Gr~V~Vk~Ak 426 (582)
|+|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 90
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=129.58 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
...++|||+|| ++++|+++|+++|++|| |.+|+|+++ +++|||||+|.+.++|++|+ .|++..|+|+.|+|.
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45689999999 89999999999999999 999999985 45999999999999999999 999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987653
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=125.35 Aligned_cols=80 Identities=23% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....++|||+|| ++++|+++|+++|++| .|.+|+|+++ +++|||||+|.+.++|++|++ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 345689999999 8999999999999999 9999999986 569999999999999999999 999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++.+
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988754
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=127.76 Aligned_cols=81 Identities=28% Similarity=0.369 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. ++.|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEE
Confidence 355789999999 899999999999999999999999985 5689999999999999999995 689999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
++.++.+.
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99987654
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=6.4e-16 Score=124.85 Aligned_cols=71 Identities=30% Similarity=0.414 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++ |+++.|+|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 6999999 899999999999999999999999885 579999999999999999998 8999999999999986
No 94
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.5e-15 Score=134.61 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|.|+.+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345789999999 899999999999999999999999875 569999999999999999999999999999999999
Q ss_pred eccccccch
Q 007997 424 PYREKSRLV 432 (582)
Q Consensus 424 ~Ak~K~k~~ 432 (582)
++.++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 999876543
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=131.11 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhc-CCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCce-EcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSK-FGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHF-VCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~Fsq-FG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~-i~Gr~V~Vk 423 (582)
...++|||+|| ++++|+++|+++|++ ||+|.+|+|+++ ++||||||+|.+.++|++|++.|++.. |+|+.|+|.
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999 899999999999999 999999999986 579999999999999999999999999 999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9987754
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=2.4e-15 Score=129.38 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999 899999999999999999999999986 679999999999999999999999999999999999
Q ss_pred ecc
Q 007997 424 PYR 426 (582)
Q Consensus 424 ~Ak 426 (582)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=129.26 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
..+..++|||+|| ++++|+++|+++|++||+|.++.++.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3455789999999 899999999999999999998888774 56899999999999999999999999999999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987653
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=131.92 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++. +++.|+|+.|+|.++
T Consensus 26 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3579999999 899999999999999999999999986 5799999999999999999999 999999999999999
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
.++.+.
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 988653
No 99
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=130.60 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC-EeEEEee-cc----CCCceEEEEECCHHHHHHHHHhcC--CceEcCeEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIP-CQ----QKRMFGFVTFVFAETVKQILAKGN--PHFVCGARV 420 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~-V~~VrI~-~D----~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V 420 (582)
...++|||+|| ++++|+++|+++|++||+ |.+|+|+ .+ ++||||||+|.+.++|+.|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999 899999999999999999 9999998 43 689999999999999999999996 589999999
Q ss_pred EEeeccccccc
Q 007997 421 LVKPYREKSRL 431 (582)
Q Consensus 421 ~Vk~Ak~K~k~ 431 (582)
+|.+++++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 100
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=124.66 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||++.|+|+.|+|.++++
T Consensus 7 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 456789999999 8999999999999999999999996 55999999999999999999999999999999999988
Q ss_pred cccc
Q 007997 428 KSRL 431 (582)
Q Consensus 428 K~k~ 431 (582)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 101
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=2.3e-15 Score=138.16 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+.| ++||||||+|.+.++|+.|++.||++.|+|+.|+|.
T Consensus 67 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355789999999 899999999999999999999999986 589999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+++++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99887543
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=132.41 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE-eEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV-QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V-~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||.| .+|+|++| ++||||||+|.+.++|++|++. |++.|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 445789999999 8999999999999999999 89999986 6899999999999999999998 9999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
++.++...
T Consensus 90 ~a~~~~~~ 97 (114)
T 2cpy_A 90 VVTLEDMR 97 (114)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 103
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.2e-16 Score=129.38 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCC-EeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC-ceEcCeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP-VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~-V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~-~~i~Gr~V~Vk~A 425 (582)
....++|||+|| ++++|+++|+++|++||+ |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|+.|+|.++
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 356789999999 899999999999999999 6666553 799999999999999999999999 9999999999999
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
+++...
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 987653
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=7.3e-16 Score=132.18 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
....++|||+|| ++++|+++|+++|++|| |.+|+|+++ ++||||||+|.+.++|++|+ .|++..|+|+.|+|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355789999999 89999999999999999 999999875 36999999999999999999 89999999999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998874
No 105
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=1.3e-15 Score=142.31 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++++|+++|+++|++||+|..|+|+++ +++|||||+|.+.++|.+|++. +++.|+|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 45689999999 899999999999999999999999986 4699999999999999999998 79999999999999
Q ss_pred ccccccchh
Q 007997 425 YREKSRLVD 433 (582)
Q Consensus 425 Ak~K~k~~~ 433 (582)
+.++.+...
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 999876543
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.3e-15 Score=137.49 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++++|+++|+++|++||+|++|+|+.+ +++|||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 899999999999999999999999986 46899999999999999999999999999999999
Q ss_pred eecccccc
Q 007997 423 KPYREKSR 430 (582)
Q Consensus 423 k~Ak~K~k 430 (582)
.+++++..
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987654
No 107
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.6e-15 Score=124.44 Aligned_cols=79 Identities=24% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|+ ++|+++|+++|++||+|.+|+|.. +||||||+|.+.++|++|++.|++..|+|+.|+|.++++
T Consensus 12 ~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 345689999996 789999999999999999999975 999999999999999999999999999999999999988
Q ss_pred cccc
Q 007997 428 KSRL 431 (582)
Q Consensus 428 K~k~ 431 (582)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 108
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=2.2e-15 Score=137.76 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.....++|||+|| ++++|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|..|++.||+..|+|+.|+|.+++
T Consensus 69 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 69 SCPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SSTTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3456789999999 899999999999999999999999986 79999999999999999999999999999999999998
Q ss_pred ccc
Q 007997 427 EKS 429 (582)
Q Consensus 427 ~K~ 429 (582)
++.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.4e-15 Score=124.42 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcC--CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqF--G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.....++|||+|| ++.+|+++|+++|++| |.|.+|+++ ||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 11 TMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999 8999999999999999 999999874 78999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++++.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 998764
No 110
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=128.96 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE-EEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~-VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....+|||+|| ++++|+++|+++|++||.|.+ |+|+++ ++||||||+|.+.++|++|++. ++..|+||.|+|.+
T Consensus 13 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999 899999999999999999998 889875 6899999999999999999998 99999999999998
Q ss_pred cccc
Q 007997 425 YREK 428 (582)
Q Consensus 425 Ak~K 428 (582)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7654
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.59 E-value=3.2e-15 Score=130.73 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ||||||+|.+.++|++|++.||+..|+|+.|.|.++++
T Consensus 28 ~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 356789999999 8999999999999999999999997 89999999999999999999999999999999999988
Q ss_pred ccc
Q 007997 428 KSR 430 (582)
Q Consensus 428 K~k 430 (582)
+.+
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=9.8e-16 Score=130.78 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=73.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 431 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~k~ 431 (582)
.+|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++|||||+|.+.++|++|++.|++..++|+.|+|.+++++.+.
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 38999999 889999999999999999999999987 8999999999999999999999999999999999999987643
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-16 Score=138.32 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--EEeecc----CCCceEEEEECCHHHHHHHHHhcCCc----eEcC
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH----FVCG 417 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~----~i~G 417 (582)
....++|||+|| ++++||++|+++|++||+|.. |+|++| ++||||||+|.+. +|.+|+..||+. .|+|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 355789999999 899999999999999999976 999986 5899999999999 999999999999 9999
Q ss_pred eEEEEeecccccc
Q 007997 418 ARVLVKPYREKSR 430 (582)
Q Consensus 418 r~V~Vk~Ak~K~k 430 (582)
+.|+|++++++.+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988654
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=133.49 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|+.|++.||+..|+|+.|+|.|+..+
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4579999999 89999999999999999999999987 8999999999999999999999999999999999998764
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-16 Score=127.65 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+..++|||+|| ++++++++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|+.|++.||+..|+|+.++|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999 899999999999999999999999985 5699999999999999999999999999999998877
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 116
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=1.1e-15 Score=128.62 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.+..++|||+|| ++++|+++|+++|++||+|.+++++.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 899999999999999999998888874 578999999999999999999999999999999999
Q ss_pred eccc
Q 007997 424 PYRE 427 (582)
Q Consensus 424 ~Ak~ 427 (582)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=123.55 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+ ++||||+|.+.++|++|++.||+..|+|+.|+|.++++
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 356789999999 8999999999999999999999997 56999999999999999999999999999999999988
Q ss_pred ccc
Q 007997 428 KSR 430 (582)
Q Consensus 428 K~k 430 (582)
+.+
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 118
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=8.2e-16 Score=140.03 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++ +++..++|+.|+|.+|
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3569999999 899999999999999999999999885 579999999999999999998 7999999999999999
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
.+|
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 887
No 119
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2e-15 Score=128.36 Aligned_cols=78 Identities=15% Similarity=0.405 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 348 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.+..++|||+|| ++ .+|+++|+++|++||+|.+|+|+ ||||||+|.+.++|+.|++.|++..++|+.|+|.+++
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 456789999999 77 99999999999999999999994 8999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++.+
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7754
No 120
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.4e-15 Score=131.97 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|+ .||++.|+|+.|+|.+++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 569999999 899999999999999999999999875 57999999999999999999 899999999999999988
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 121
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=123.69 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|++|++.++ +.++|+.|+|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 48999999 899999999999999999999999885 569999999999999999999998 9999999999987
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=130.46 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE----eEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V----~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.+..++|||+|| ++++|+++|+++|++||.| ..+++..+++||||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 356789999999 8999999999999999999 66777666889999999999999999999999999999999999
Q ss_pred eccccccc
Q 007997 424 PYREKSRL 431 (582)
Q Consensus 424 ~Ak~K~k~ 431 (582)
+++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987654
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=4.7e-16 Score=129.86 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
++|||+|| ++++++++|+++|++||+|.+|+|+++ +++|||||+|.+.+ |..|+..||+..++|+.|+|.+|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999 899999999999999999999999985 56999999999999 9999999999999999999999988
Q ss_pred cccc
Q 007997 428 KSRL 431 (582)
Q Consensus 428 K~k~ 431 (582)
+...
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=124.72 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCeEEEcCCCCCCC------CHHHHHHHhhcCCCEeEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCe-EEE
Q 007997 351 SRQIYLTFPAESTF------TEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVL 421 (582)
Q Consensus 351 ~rtIyVg~L~~~~~------TEedLr~~FsqFG~V~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr-~V~ 421 (582)
+++|||+|| ++.+ |+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+ .|+
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 369999999 7888 78999999999999999999863 7899999999999999999999999999999 887
Q ss_pred Ee
Q 007997 422 VK 423 (582)
Q Consensus 422 Vk 423 (582)
|.
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-15 Score=125.85 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....++|||+|| ++++|+++|+++|++||+| +|+.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 4456789999999 8999999999999999987 45553 689999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
+++++.+
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9988754
No 126
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=135.36 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC--CceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn--~~~i~Gr~V~Vk~ 424 (582)
..+.++|||+|| +++ +||++|+++|++||+|.+|+|++ +||||||+|.+.++|..|++.|+ +..|+||.|+|.+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 456789999999 887 99999999999999999999987 89999999999999999999875 5679999999999
Q ss_pred ccccccc
Q 007997 425 YREKSRL 431 (582)
Q Consensus 425 Ak~K~k~ 431 (582)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876543
No 127
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=5.7e-15 Score=137.66 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|..|+|+.+ +++|||||+|.+.+.|+.|++.||+..|+|+.|.|.+
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44679999999 889999999999999999999999985 4689999999999999999999999999999999999
Q ss_pred ccccccch
Q 007997 425 YREKSRLV 432 (582)
Q Consensus 425 Ak~K~k~~ 432 (582)
+.++....
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 99876544
No 128
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=2.7e-15 Score=133.00 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
...++|||+|| ++++|+++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ++++.|+||.|+|
T Consensus 15 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45679999999 899999999999999999 899999986 679999999999999999999 8999999999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 129
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.1e-15 Score=137.05 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 45 ~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44679999999 899999999999999999999999875 6799999999999999999999999999999999999
Q ss_pred ccccccch
Q 007997 425 YREKSRLV 432 (582)
Q Consensus 425 Ak~K~k~~ 432 (582)
++++....
T Consensus 124 a~~~~~~~ 131 (135)
T 2lea_A 124 ARYGRPPD 131 (135)
T ss_dssp CCCCCCCT
T ss_pred CCCCCCCc
Confidence 99875543
No 130
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=123.91 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEE-eeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~Vr-I~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
...++|||+|| ++++|+++|+++|++||+|.+|+ |+.++..|.|||+|.+.++|+.|++.||+..|+|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34689999999 89999999999999999999995 88887777899999999999999999999999999999999998
Q ss_pred c
Q 007997 428 K 428 (582)
Q Consensus 428 K 428 (582)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 7
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.2e-15 Score=144.46 Aligned_cols=81 Identities=15% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 34679999999 899999999999999999999999986 5699999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++..
T Consensus 202 a~~~~~ 207 (216)
T 2qfj_A 202 AVTPPM 207 (216)
T ss_dssp CSSCSS
T ss_pred ecCCCC
Confidence 998754
No 132
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=5.1e-15 Score=128.61 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
+..++|||++| +++ +|+++|+++|++||+|.+|+| +||||||+|.+.++|+.|++.|++..|+|+.|+|.++++
T Consensus 25 ~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 44689999999 888 999999999999999999999 689999999999999999999999999999999999986
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 133
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.4e-15 Score=130.12 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
..+|||+|| ++++|+++|+++|++| .|.+|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|.|..+.+
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 469999999 8999999999999999 8999999986 68999999999999999999 5799999999999998876
Q ss_pred c
Q 007997 428 K 428 (582)
Q Consensus 428 K 428 (582)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-15 Score=129.62 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++++|+++|+++|++||+|.. .++.+ ++||||||+|.+.++|++|++ ||+..|+|+.|+|.+
T Consensus 15 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNL-NPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 45679999999 899999999999999999988 55553 789999999999999999999 999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 988754
No 135
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.4e-15 Score=131.22 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCCeEEE--cCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE-----cCeEEE
Q 007997 349 AGSRQIYL--TFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV-----CGARVL 421 (582)
Q Consensus 349 ~~~rtIyV--g~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i-----~Gr~V~ 421 (582)
.++++||| |+| ++++||++|+++|++||+|.+|.|+. .||||||+|.+.++|++|++.||+..| .|+.|.
T Consensus 23 ~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp SCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 45789999 889 89999999999999999999999987 699999999999999999999999998 799999
Q ss_pred Eeeccccc
Q 007997 422 VKPYREKS 429 (582)
Q Consensus 422 Vk~Ak~K~ 429 (582)
|.+++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987654
No 136
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=3.4e-15 Score=136.97 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
.....+|||+|| ++++|+++|+++|++||. |.+|+|++| ++||||||+|.+.++|++|++ +|+..|+||.|+
T Consensus 41 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345679999999 899999999999999999 899999986 679999999999999999999 899999999999
Q ss_pred Eeeccccc
Q 007997 422 VKPYREKS 429 (582)
Q Consensus 422 Vk~Ak~K~ 429 (582)
|.++.++.
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987553
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=6e-15 Score=124.55 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
...++|||+|| ++.+|+++|+++|++||.|..+ ...+++||||||+|.+.++|++|++.|++..|+|+.|+|.++.++
T Consensus 14 ~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45789999999 8999999999999999999887 333478999999999999999999999999999999999999887
Q ss_pred cc
Q 007997 429 SR 430 (582)
Q Consensus 429 ~k 430 (582)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=123.04 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
...++|||+|| ++++|+++|+++|++||+|.+|.+.....+ ||||+|.+.++|++|++ ||++.|+|+.|.|.++.++
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 35679999999 899999999999999999999822222333 99999999999999999 9999999999999998776
Q ss_pred cc
Q 007997 429 SR 430 (582)
Q Consensus 429 ~k 430 (582)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9.7e-15 Score=122.18 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 429 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~ 429 (582)
..++|||+|| ++++|+++|+++|++| +|.+|+|. ++||||||+|.+.++|++|++.||+..++|+.|+|.++..+.
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4579999999 8999999999999999 99999996 599999999999999999999999999999999999987653
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.3e-15 Score=121.32 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
||||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++. +++.++|+.|.|++|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999 899999999999999999999999885 5799999999999999999997 899999999999875
No 141
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-15 Score=123.02 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccccc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 429 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K~ 429 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ +||||||+|.+.++|++|+.. ...++|+.|.|.++.++.
T Consensus 4 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 4689999999 899999999999999999999999975 899999999999999876433 466799999999998876
Q ss_pred cc
Q 007997 430 RL 431 (582)
Q Consensus 430 k~ 431 (582)
..
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 142
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.6e-15 Score=127.67 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
....++|||+|| ++++||++|+++|++||.| +|+|++| ++||||||+|.+.++|++|++ +|++.|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345679999999 8999999999999999954 9999986 679999999999999999995 699999999999998
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87664
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=130.20 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCC---EeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGP---VQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~---V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
.....+|||+|| ++++|+++|+++|++||. |.+|+|+++ ++||||||+|.+.++|++|++ ++++.|+||.|+
T Consensus 8 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345679999999 899999999999999998 999999986 689999999999999999999 899999999999
Q ss_pred Eeeccccc
Q 007997 422 VKPYREKS 429 (582)
Q Consensus 422 Vk~Ak~K~ 429 (582)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99988754
No 144
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-15 Score=133.83 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....+|||+|| ++++|+++|+++|++||.|.++.++.+ +++|||||+|.+.++|++|++ ||++.|+|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345679999999 899999999999999999988555442 679999999999999999999 89999999999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
++.++.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=7.1e-15 Score=133.38 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--------EEeec-cCCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPC-QQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~-D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
...+++|||+|| ++++|+++|+++|++||.|.. |++.. +++||||||+|.+.++|.+|+..||+..|+|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345689999999 899999999999999999876 44443 47899999999999999999999999999999
Q ss_pred EEEEeeccccccchh
Q 007997 419 RVLVKPYREKSRLVD 433 (582)
Q Consensus 419 ~V~Vk~Ak~K~k~~~ 433 (582)
.|+|.+++++....+
T Consensus 121 ~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 121 PMVVQFARSARPKQD 135 (143)
T ss_dssp ECEEEECCCSCC---
T ss_pred EEEEEECCCCCCccC
Confidence 999999987654443
No 146
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=126.70 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceE--------cC
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFV--------CG 417 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i--------~G 417 (582)
...++|||++| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|+.|++.||+..| .+
T Consensus 23 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45679999999 899999999999999999999999986 5689999999999999999999999999 67
Q ss_pred eEEEEeecccc
Q 007997 418 ARVLVKPYREK 428 (582)
Q Consensus 418 r~V~Vk~Ak~K 428 (582)
+.|.|+++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998865
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=5.4e-15 Score=145.98 Aligned_cols=79 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC--CEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFG--PVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG--~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
...+|||+|| ++++|+++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4569999999 89999999999999999 9999999986 579999999999999999999999999999999999
Q ss_pred eccccc
Q 007997 424 PYREKS 429 (582)
Q Consensus 424 ~Ak~K~ 429 (582)
+++++.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998764
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=4.9e-15 Score=126.61 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+.+ ++||||||+|.+.++|++|++ +++.++|+.|.|.++.
T Consensus 8 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4579999999 899999999999999999999999986 578999999999999999999 8999999999999999
Q ss_pred ccccch
Q 007997 427 EKSRLV 432 (582)
Q Consensus 427 ~K~k~~ 432 (582)
++....
T Consensus 85 ~~~~~~ 90 (102)
T 2xs2_A 85 RKQNLS 90 (102)
T ss_dssp ECC---
T ss_pred cCcchh
Confidence 876543
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=1.5e-14 Score=137.27 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC--eEEEEeecccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 428 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk~Ak~K 428 (582)
..+|||+|| ++.+|+++|+++|++||+|++|+|..+++||||||+|.+.++|+.|++.||+..|+| +.|+|.+++++
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 348999999 899999999999999999999999876778999999999999999999999999966 99999999987
Q ss_pred c
Q 007997 429 S 429 (582)
Q Consensus 429 ~ 429 (582)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 150
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.8e-14 Score=130.48 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
...++|||+|| ++++|+++|+++|++||.|..+ ...++++|||||+|.+.++|.+|++.||+..|+|+.|+|.++.+|
T Consensus 97 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 45789999999 8999999999999999999887 333478999999999999999999999999999999999999887
Q ss_pred c
Q 007997 429 S 429 (582)
Q Consensus 429 ~ 429 (582)
.
T Consensus 175 ~ 175 (175)
T 1fje_B 175 G 175 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=9.7e-15 Score=133.34 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEc---CeEEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARVLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~---Gr~V~V 422 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..+. |+.|+|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 35679999999 899999999999999999999999986 56999999999999999999999997665 499999
Q ss_pred eecc
Q 007997 423 KPYR 426 (582)
Q Consensus 423 k~Ak 426 (582)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=2.7e-14 Score=129.84 Aligned_cols=76 Identities=20% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcC--eEEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G--r~V~V 422 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..++| ++|+|
T Consensus 87 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45689999999 889999999999999999999999885 468999999999999999999999999988 99999
Q ss_pred eec
Q 007997 423 KPY 425 (582)
Q Consensus 423 k~A 425 (582)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 153
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.52 E-value=3.1e-14 Score=117.64 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
...++|||+|| ++++|+++|+++|++| | +|.+|++++ .||||||+|.+.++|++|+ .||+..|+|
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 34679999999 8999999999999999 8 999999987 6999999999999999999 999999999
Q ss_pred eEEEEee
Q 007997 418 ARVLVKP 424 (582)
Q Consensus 418 r~V~Vk~ 424 (582)
+.|+|..
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 154
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=3.6e-14 Score=137.45 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCC-CCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 349 AGSRQIYLTFPAE-STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 349 ~~~rtIyVg~L~~-~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
+++.+|||+|| + +.+|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|+.|++.||+..+.|+.|+|.+++.
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56789999999 6 89999999999999999999999986 589999999999999999999999999999999999876
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 155
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-14 Score=121.29 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.....++|||+|| ++++|+++|+++|++|+ +|+++.+ ++||||||+|.+.++|++|++.||++.|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456789999999 89999999999999885 4555554 57899999999999999999999999999999999
Q ss_pred eecccccc
Q 007997 423 KPYREKSR 430 (582)
Q Consensus 423 k~Ak~K~k 430 (582)
.+++++.+
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99998765
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=1.9e-14 Score=130.20 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeE--EEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR--VLV 422 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~--V~V 422 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|++.||+..++|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 45679999999 889999999999999999999999885 46899999999999999999999999999975 888
Q ss_pred eec
Q 007997 423 KPY 425 (582)
Q Consensus 423 k~A 425 (582)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 157
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-15 Score=133.75 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeE--------EEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC 416 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~--------VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~ 416 (582)
+..++|||+|| ++++|+++|+++|++||+|.+ |+|+.+ ++||||||+|.+.++|++|++.||+..|+
T Consensus 5 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45689999999 899999999999999999999 889875 57999999999999999999999999999
Q ss_pred CeEEEEeeccccccc
Q 007997 417 GARVLVKPYREKSRL 431 (582)
Q Consensus 417 Gr~V~Vk~Ak~K~k~ 431 (582)
|+.|+|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887543
No 158
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=2.6e-14 Score=127.84 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
...++|||+|+ ++|+++|+++|++||+|.+|+|+. +||||||+|.+.++|++|++.||+..|+|+.|+|.+++++
T Consensus 37 ~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 45789999997 589999999999999999999985 9999999999999999999999999999999999999987
Q ss_pred ccc
Q 007997 429 SRL 431 (582)
Q Consensus 429 ~k~ 431 (582)
...
T Consensus 112 ~~~ 114 (121)
T 2bz2_A 112 PML 114 (121)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=4.9e-14 Score=128.08 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
+.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|+.|++.+++..++|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4679999999 899999999999999999999999885 47899999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
.++..
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=4.4e-14 Score=136.05 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
.+.+||||||| ++++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+++..+.|+.|+|.+
T Consensus 13 ~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34679999999 899999999999999999999999986 5799999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876643
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=6.7e-14 Score=126.51 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|+.|++.+++..++|+.|+|.++.
T Consensus 2 ~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999 899999999999999999999999885 467999999999999999999999999999999999998
Q ss_pred cccc
Q 007997 427 EKSR 430 (582)
Q Consensus 427 ~K~k 430 (582)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-14 Score=130.93 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCE----eEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPV----QDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V----~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
...+|||+|| +|++|+++|+++|++||+| .+|+|+++ ++||||||+|.+.++|++|++. +++.|+||.|.|
T Consensus 22 ~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 4569999999 8999999999999999986 68999885 6799999999999999999998 999999999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887653
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.8e-14 Score=127.36 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
|+|||+|| ++++|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|..|++.+++..+.|+.|.|.++.++
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 69999999 899999999999999999999999886 57899999999999999999999999999999999998776
Q ss_pred cc
Q 007997 429 SR 430 (582)
Q Consensus 429 ~k 430 (582)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=2.2e-14 Score=126.50 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeE-----EEEee
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR-----VLVKP 424 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~-----V~Vk~ 424 (582)
...+|||+|| ++++|+++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.||+..|+|+. |+|..
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 3579999999 899999999999999999999999885 99999999999999999999999999998 77777
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+.++.
T Consensus 91 ~~~~~ 95 (115)
T 3beg_B 91 DGPRS 95 (115)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 66543
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=6.1e-14 Score=133.32 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
......+|||+|| ++.+++++|+++|++||+|++|.|+++ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4455789999999 899999999999999999999999985 679999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987643
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=1.1e-13 Score=138.19 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEE
Q 007997 347 IVAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 420 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V 420 (582)
.....++|||+|| ++. +|+++|+++|++||+|..|+|+++ +++|||||+|.+.++|.+|+ .||+..|+|+.|
T Consensus 206 ~~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 206 ATLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp -CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred cCCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 3456789999999 888 999999999999999999999885 45999999999999999999 999999999999
Q ss_pred EEeeccccc
Q 007997 421 LVKPYREKS 429 (582)
Q Consensus 421 ~Vk~Ak~K~ 429 (582)
.|.++++|.
T Consensus 284 ~V~~a~~k~ 292 (292)
T 2ghp_A 284 SVSLADKKP 292 (292)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999999873
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.2e-14 Score=133.84 Aligned_cols=80 Identities=14% Similarity=0.034 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
...++|||+|| ++++||++|+++|++|| |++|+|++| ++||||||+|.+.++|++|+ .+|++.|+||.|+|.++
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34579999999 89999999999999999 779999986 68999999999999999999 77999999999999998
Q ss_pred cccccc
Q 007997 426 REKSRL 431 (582)
Q Consensus 426 k~K~k~ 431 (582)
.++...
T Consensus 121 ~~~~~~ 126 (139)
T 2hgn_A 121 STTGAS 126 (139)
T ss_dssp CCSCC-
T ss_pred CCCCCC
Confidence 876543
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.4e-13 Score=126.01 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=70.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCce-EEEEECCHHHHHHHHHhcCCceEcC--eEEEEeecccc
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREK 428 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGf-GFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk~Ak~K 428 (582)
-+|||+|| ++.+|+++|+++|++||+|.+|+|+. +.||| |||+|.+.++|+.|++.||+..|.| +.|+|.+++++
T Consensus 29 L~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 48999999 89999999999999999999998876 45788 9999999999999999999999998 99999999876
Q ss_pred c
Q 007997 429 S 429 (582)
Q Consensus 429 ~ 429 (582)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 169
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=3.7e-14 Score=128.79 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEe--EEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQ--DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~--~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
...++|||+|| ++++||++|+++|++| .|+ +|+|++| ++||||||+|.+.++|++|++. ++..|+||.|+|.
T Consensus 40 ~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 45679999999 8999999999999999 577 9999986 6899999999999999999997 7799999999999
Q ss_pred ecccc
Q 007997 424 PYREK 428 (582)
Q Consensus 424 ~Ak~K 428 (582)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.2e-13 Score=125.25 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCce-EEEEECCHHHHHHHHHhcCCceEcC--eEEEEeeccccc
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMF-GFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYREKS 429 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGf-GFVtF~~~e~A~~Al~~mn~~~i~G--r~V~Vk~Ak~K~ 429 (582)
.|||+|| ++.+|+++|+++|++||+|.+|+|.. ..|| |||+|.+.++|..|++.||+..|+| +.|+|.+|+++.
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999 89999999999999999999999976 3597 9999999999999999999999988 699999999875
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.47 E-value=9.9e-14 Score=137.92 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCC-CHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTF-TEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~-TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++++ |+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 182 ~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 45789999999 7884 99999999999999999999885 5799999999999999999999999999999999999
Q ss_pred ccccccch
Q 007997 425 YREKSRLV 432 (582)
Q Consensus 425 Ak~K~k~~ 432 (582)
+.++....
T Consensus 261 a~~~~~~~ 268 (284)
T 3smz_A 261 CAPGPPGR 268 (284)
T ss_dssp CCSSSCHH
T ss_pred ecCCCccc
Confidence 99887643
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=120.86 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc-------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D-------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
...++|||+|| ++++|+++|+++|++||+|. +.++.+ ++||||||+|.+.++|++|++.| +.++|+.+.
T Consensus 6 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~--~~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC--LEEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS--EEETTEEEE
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh--hhcCCcEEE
Confidence 45689999999 89999999999999999999 888874 56999999999999999999998 458999998
Q ss_pred Eeecccc
Q 007997 422 VKPYREK 428 (582)
Q Consensus 422 Vk~Ak~K 428 (582)
|..+.+.
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 8765543
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.4e-13 Score=128.64 Aligned_cols=81 Identities=14% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 889999999999999999999999985 4599999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++.+
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 998764
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.45 E-value=1.6e-13 Score=127.96 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++. +++.++|+.|.|.
T Consensus 10 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 10 PEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345789999999 899999999999999999999999986 4689999999999999999988 8999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9887643
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=1.1e-13 Score=134.74 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 346 GIVAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...+.+++|||+|| ++ ++|+++|+++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..|+|+.|.|.+
T Consensus 29 ~~~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567899999999 67 99999999999999999999999875 89999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+.++.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98663
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=2.8e-13 Score=118.77 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCC----CCCCHHHHHHHhhcCCCEeEEEeecc-----CCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 348 VAGSRQIYLTFPAE----STFTEQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 348 ~~~~rtIyVg~L~~----~~~TEedLr~~FsqFG~V~~VrI~~D-----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
..++++|+|.|+.. .+-++++|++.|++||+|++|+|+.+ ++||||||+|.+.++|.+|++.||+..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999932 12378999999999999999999975 5699999999999999999999999999999
Q ss_pred EEEEeeccc
Q 007997 419 RVLVKPYRE 427 (582)
Q Consensus 419 ~V~Vk~Ak~ 427 (582)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.44 E-value=2.5e-13 Score=146.16 Aligned_cols=82 Identities=16% Similarity=0.339 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
....++|||+|| ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|.+||..||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999 899999999999999999999999975 579999999999999999999999999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 178
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=1.5e-13 Score=125.68 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
...++|||+|| ++.+|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|.+|++.||+..++|+.|.|.+
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 44789999999 889999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred cc
Q 007997 425 YR 426 (582)
Q Consensus 425 Ak 426 (582)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.7e-13 Score=117.23 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCC-----------CHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 347 IVAGSRQIYLTFPAESTF-----------TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~-----------TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
....+++|+|.|| -... ++++|+++|++||+|.+|.|....+||||||+|.+.++|++|++.||+..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456889999999 3222 258999999999999999774336899999999999999999999999999
Q ss_pred cCeEEEEeecccccc
Q 007997 416 CGARVLVKPYREKSR 430 (582)
Q Consensus 416 ~Gr~V~Vk~Ak~K~k 430 (582)
+|+.|+|.++.++.+
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999988754
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=3.5e-13 Score=133.88 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHH----HHhhcCCCEeEEEeecc-CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVS----NYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr----~~FsqFG~V~~VrI~~D-~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
...+++|||+|| ++++|+++|+ ++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 6 ~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456889999999 8999999977 89999999999999874 78999999999999999999999999999999999
Q ss_pred eecccccc
Q 007997 423 KPYREKSR 430 (582)
Q Consensus 423 k~Ak~K~k 430 (582)
.+++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99976654
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=119.02 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=70.6
Q ss_pred CCCCCe-EEEcCCCCCCCCHHH----HHHHhhcC-CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 348 VAGSRQ-IYLTFPAESTFTEQD----VSNYFSKF-GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 348 ~~~~rt-IyVg~L~~~~~TEed----Lr~~FsqF-G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
.+++.| |||+|| ++++++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|++..+.||.|+
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345666 999999 89999988 55899999 599999 249999999999999999999999999999999
Q ss_pred Eeeccccccchhh
Q 007997 422 VKPYREKSRLVDR 434 (582)
Q Consensus 422 Vk~Ak~K~k~~~r 434 (582)
|.+|+.+.+....
T Consensus 78 v~~A~~~sd~~~~ 90 (96)
T 2diu_A 78 VSFTPKNRELCET 90 (96)
T ss_dssp EESSCCSCCCCCC
T ss_pred EEecCCCcceeEe
Confidence 9999998776543
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=2.6e-13 Score=128.39 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=73.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
.++|||+|| ++++|+++|+++|++||+|.+|+|+++ +++|||||+|.+.++|++|++.+++..|+|+.|+|.++.
T Consensus 28 ~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 569999999 899999999999999999999999885 589999999999999999999999999999999999988
Q ss_pred ccccch
Q 007997 427 EKSRLV 432 (582)
Q Consensus 427 ~K~k~~ 432 (582)
.+....
T Consensus 107 ~~~~~~ 112 (216)
T 2qfj_A 107 NIGQAQ 112 (216)
T ss_dssp CCGGGH
T ss_pred Cccccc
Confidence 776443
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=5.5e-13 Score=129.76 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~A 425 (582)
.+..++|||+|| ++.+|+++|+++|++|| +|.+|+|+. +.+|||||+|.+.++|.+|++.||+..++ |+.|+|.++
T Consensus 148 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 148 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 345789999999 88999999999999999 999999955 26899999999999999999999999999 999999999
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=3.1e-13 Score=130.00 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
.++|||+|| ++++|+++|+++|++||+|..|+|+++ ++||||||+|.+.++|+.|++.+ ++.++|+.|.|.++++
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 479999999 899999999999999999999999985 67999999999999999999885 4699999999998765
Q ss_pred c
Q 007997 428 K 428 (582)
Q Consensus 428 K 428 (582)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=125.88 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeec
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 425 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~A 425 (582)
.++.++|||+|| ++.+|+++|+++|++|| +|.+|+|+.+ .+|||||+|.+.++|.+|+..||+..++ |+.|+|.++
T Consensus 117 ~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 117 FPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 355889999999 88999999999999999 9999999653 5899999999999999999999999999 999999998
Q ss_pred ccc
Q 007997 426 REK 428 (582)
Q Consensus 426 k~K 428 (582)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=2.9e-13 Score=123.48 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCceEc---CeEE
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVC---GARV 420 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~---Gr~V 420 (582)
..++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|++|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4679999999 899999999999999999999999986 47899999999999999999999998776 6788
Q ss_pred EEeeccccc
Q 007997 421 LVKPYREKS 429 (582)
Q Consensus 421 ~Vk~Ak~K~ 429 (582)
.|.++..+.
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888776554
No 187
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=3.3e-13 Score=122.77 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.+++|||+|| ++++|+++|+++|++||+|.+|+|+++ ++||||||+|.+.++|+.|++. ++.++|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4679999999 899999999999999999999999985 6799999999999999999996 58999999999998
Q ss_pred cccc
Q 007997 426 REKS 429 (582)
Q Consensus 426 k~K~ 429 (582)
.++.
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 7654
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=128.34 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCC-CCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecccc
Q 007997 350 GSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 428 (582)
Q Consensus 350 ~~rtIyVg~L~~~-~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~K 428 (582)
++++|||+|| ++ ++|+++|+++|++||+|.+|+|++++ +|||||+|.+.++|++|++.|++..++|+.|.|.++..+
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 3579999999 67 99999999999999999999999875 899999999999999999999999999999999999876
Q ss_pred c
Q 007997 429 S 429 (582)
Q Consensus 429 ~ 429 (582)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=8.5e-13 Score=131.04 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc-CeEEEEeec
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 425 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~-Gr~V~Vk~A 425 (582)
..+..++|||+|| ++.+|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|.+|++.||+..|+ |+.|+|.|+
T Consensus 203 ~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 203 ENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3456789999999 8999999999999999999999999754 699999999999999999999999999 999999998
Q ss_pred c
Q 007997 426 R 426 (582)
Q Consensus 426 k 426 (582)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=5.1e-13 Score=132.62 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhc-CCceEc---CeEEEE
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKG-NPHFVC---GARVLV 422 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~m-n~~~i~---Gr~V~V 422 (582)
...+|||+|| ++.+|+++|+++|++||+|.+|+|+.+ +++|||||+|.+.++|.+|+..| ++..+. |+.|.|
T Consensus 95 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999 899999999999999999999999986 67999999999999999999999 455555 999999
Q ss_pred eeccccc
Q 007997 423 KPYREKS 429 (582)
Q Consensus 423 k~Ak~K~ 429 (582)
.++.++.
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998754
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.35 E-value=8.1e-13 Score=121.29 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=65.2
Q ss_pred CeEEEcCC---CCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECC----HHH----HHHHHH--hcCCce
Q 007997 352 RQIYLTFP---AESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVF----AET----VKQILA--KGNPHF 414 (582)
Q Consensus 352 rtIyVg~L---~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~----~e~----A~~Al~--~mn~~~ 414 (582)
.+||||+| .+|.++|++|++||++||+|.+|.++.| ++||||||+|.+ ++. |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 2388999999999999999999999997 789999999996 333 888988 789999
Q ss_pred EcCeEEEEeec
Q 007997 415 VCGARVLVKPY 425 (582)
Q Consensus 415 i~Gr~V~Vk~A 425 (582)
|+||.|+|+.-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999963
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.34 E-value=2.1e-12 Score=120.56 Aligned_cols=77 Identities=21% Similarity=0.335 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
...++|||+|| ++++|+++|+++|++| | .|.++.+.. +||||||+|.+.++|++|+ .||+..|+|
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 34689999999 8999999999999999 6 788888765 8999999999999999999 899999999
Q ss_pred eEEEEeeccccc
Q 007997 418 ARVLVKPYREKS 429 (582)
Q Consensus 418 r~V~Vk~Ak~K~ 429 (582)
+.|+|.++..+.
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999988764
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=2.4e-12 Score=117.54 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcC----C-------CEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKF----G-------PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqF----G-------~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
..++|||+|| ++++|+++|+++|++| | .|.++++.. +||||||+|.+.++|++|+ .+++..++|+
T Consensus 3 ~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 4679999999 8999999999999999 7 889998877 8999999999999999999 8999999999
Q ss_pred EEEEeeccccc
Q 007997 419 RVLVKPYREKS 429 (582)
Q Consensus 419 ~V~Vk~Ak~K~ 429 (582)
.|+|.++....
T Consensus 79 ~i~v~~~~~~~ 89 (172)
T 2g4b_A 79 SLKIRRPHDYQ 89 (172)
T ss_dssp ECEEECCSSCC
T ss_pred eeeecCCcccC
Confidence 99999876543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.34 E-value=2.4e-12 Score=127.79 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
....++|||+|| ++++|+++|+++|++||+|.+|+|.+ +||||||+|.+.++|..|+..+++..|+|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 19 YTQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SCGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 345679999999 89999999999999999999999987 799999999999999999999999999999999999876
Q ss_pred cc
Q 007997 428 KS 429 (582)
Q Consensus 428 K~ 429 (582)
..
T Consensus 96 ~~ 97 (261)
T 3sde_A 96 GA 97 (261)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=1.1e-12 Score=120.55 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeec---cCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEe
Q 007997 347 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 423 (582)
Q Consensus 347 ~~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~---D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk 423 (582)
.....++|||+|| ++++|+++|+++|++||.|..+.|.. +++||||||+|.+.++|++|++ ||+..|+|+.|+|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999 89999999999999999877632222 3789999999999999999995 89999999999999
Q ss_pred ecccccc
Q 007997 424 PYREKSR 430 (582)
Q Consensus 424 ~Ak~K~k 430 (582)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987654
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=4.4e-12 Score=110.98 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCC-CC--------CHHHHHHHhhcCCCEeEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCc
Q 007997 349 AGSRQIYLTFPAES-TF--------TEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPH 413 (582)
Q Consensus 349 ~~~rtIyVg~L~~~-~~--------TEedLr~~FsqFG~V~~VrI~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~ 413 (582)
.+++.|.|.|+-.. .+ .+++|++.|++||+|++|+|+++ +++|||||+|.+.++|.+|+..||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 56788999997321 22 34799999999999999999986 36899999999999999999999999
Q ss_pred eEcCeEEEEeecccc
Q 007997 414 FVCGARVLVKPYREK 428 (582)
Q Consensus 414 ~i~Gr~V~Vk~Ak~K 428 (582)
.++||.|+|.++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997654
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=107.94 Aligned_cols=80 Identities=10% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCC------CCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEE
Q 007997 348 VAGSRQIYLTFPAE------STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 421 (582)
Q Consensus 348 ~~~~rtIyVg~L~~------~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~ 421 (582)
....++|-|..... ..+|+++|+++|++||+|.+|+|+. ++||||||+|.+.++|..|++.++ .+.|+.|+
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 34456777766532 4589999999999999999999984 689999999999999999999854 46899999
Q ss_pred Eeecccccc
Q 007997 422 VKPYREKSR 430 (582)
Q Consensus 422 Vk~Ak~K~k 430 (582)
|.|++++..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999988764
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.1e-12 Score=114.54 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=60.3
Q ss_pred EcCCCCCCCCHHHHHHHh------------hcCCCEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEE
Q 007997 356 LTFPAESTFTEQDVSNYF------------SKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 420 (582)
Q Consensus 356 Vg~L~~~~~TEedLr~~F------------sqFG~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V 420 (582)
+++| ++.+++++|+++| ++||+|.+|+|+++ ++||||||+|.+.++|++|+..||+..++||.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 4556 5667777777666 99999999999986 579999999999999999999999999999999
Q ss_pred EEeec
Q 007997 421 LVKPY 425 (582)
Q Consensus 421 ~Vk~A 425 (582)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 199
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=8.6e-12 Score=123.93 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc----CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 349 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D----~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
+..++|||+|| ++.+|+++|+++|++||+|..|+|+++ +++|||||+|.+.++|.+|++.|++..++|+.|.|.+
T Consensus 93 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 93 PTDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34579999999 899999999999999999999999875 4789999999999999999999999999999999999
Q ss_pred cccccc
Q 007997 425 YREKSR 430 (582)
Q Consensus 425 Ak~K~k 430 (582)
+.++..
T Consensus 172 a~~~~~ 177 (284)
T 3smz_A 172 TDAGQL 177 (284)
T ss_dssp CCGGGC
T ss_pred CCCCCC
Confidence 987643
No 200
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=1.4e-11 Score=109.97 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCCC---------CCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeE
Q 007997 349 AGSRQIYLTFPAEST---------FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 419 (582)
Q Consensus 349 ~~~rtIyVg~L~~~~---------~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~ 419 (582)
.+++.|.+.|+-... -.++||++.|++||+|++|.|+++..||||||+|.+.++|++|++.||+..++||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457788888873221 12468999999999999999998878999999999999999999999999999999
Q ss_pred EEEeecccc
Q 007997 420 VLVKPYREK 428 (582)
Q Consensus 420 V~Vk~Ak~K 428 (582)
|.|.++.+.
T Consensus 85 i~v~~~~~~ 93 (114)
T 3s6e_A 85 ITAAYVPLP 93 (114)
T ss_dssp CEEEEECHH
T ss_pred EEEEEEcHH
Confidence 999998654
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=1.1e-11 Score=123.69 Aligned_cols=80 Identities=14% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhcCC-CEeEEEeecc---CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~FsqFG-~V~~VrI~~D---~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
..++|||+|| ++.+|+++|+++|++|| +|.+|+|+.+ +++|||||+|.+.++|..|++.|++..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4779999999 89999999999999999 9999999985 58999999999999999999999999999999999999
Q ss_pred ccccc
Q 007997 426 REKSR 430 (582)
Q Consensus 426 k~K~k 430 (582)
.++.+
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 87654
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.25 E-value=6.8e-12 Score=121.47 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCCHHHHHHHhhcCCCE--eEEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCe----E
Q 007997 348 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPV--QDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGA----R 419 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEedLr~~FsqFG~V--~~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr----~ 419 (582)
.+++++|||+|| ++++|+++|+++|++||.| .+|+|+.+ +++|||||+|.+.++|..|+..||+..|.|+ .
T Consensus 120 ~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 356789999999 8999999999999999999 89999886 4579999999999999999999999999998 4
Q ss_pred EEEeec
Q 007997 420 VLVKPY 425 (582)
Q Consensus 420 V~Vk~A 425 (582)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=2.2e-11 Score=127.69 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCCCCCCeEEEcCCC-CCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEc---Ce--E
Q 007997 346 GIVAGSRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC---GA--R 419 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~-~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~---Gr--~ 419 (582)
....++++|||||+. ++.+||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++.||+..+. |+ .
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 345678999999831 68999999999999999999999987 8999999999999999999999999883 55 4
Q ss_pred EEEeecc
Q 007997 420 VLVKPYR 426 (582)
Q Consensus 420 V~Vk~Ak 426 (582)
+.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6667664
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=1.3e-11 Score=110.70 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCCCeEEEcCCCCC----CCCHHHHHHHhhcCCCEeEEEeeccC--------CCceEEEEECCHHHHHHHHHhcCCceEc
Q 007997 349 AGSRQIYLTFPAES----TFTEQDVSNYFSKFGPVQDVRIPCQQ--------KRMFGFVTFVFAETVKQILAKGNPHFVC 416 (582)
Q Consensus 349 ~~~rtIyVg~L~~~----~~TEedLr~~FsqFG~V~~VrI~~D~--------sRGfGFVtF~~~e~A~~Al~~mn~~~i~ 416 (582)
++++.|+|.|+... +-.+++|++.|++||+|.+|.|+.++ ++|||||+|.+.++|.+|+..||+..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 36789999998321 22479999999999999999999862 4699999999999999999999999999
Q ss_pred CeEEEEeeccc
Q 007997 417 GARVLVKPYRE 427 (582)
Q Consensus 417 Gr~V~Vk~Ak~ 427 (582)
||.|.|.++.+
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-09 Score=93.28 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCCCCCeEEEcCCCC---CC-CCH---HHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCe
Q 007997 346 GIVAGSRQIYLTFPAE---ST-FTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA 418 (582)
Q Consensus 346 ~~~~~~rtIyVg~L~~---~~-~TE---edLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr 418 (582)
..+|+.-||+|.-.+. .+ +.+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+|++ ||+..++||
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4678888999988631 12 332 6789999999999999999854 8999999999999998 999999999
Q ss_pred EEEEeecccc
Q 007997 419 RVLVKPYREK 428 (582)
Q Consensus 419 ~V~Vk~Ak~K 428 (582)
.|+|+.+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2.7e-08 Score=86.42 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCCCCCCeEEEcCCCCCC------CCH---HHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceE
Q 007997 345 GGIVAGSRQIYLTFPAEST------FTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 415 (582)
Q Consensus 345 ~~~~~~~rtIyVg~L~~~~------~TE---edLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i 415 (582)
...+|+.-||+|.-+ ++. +.+ .+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+|++ |++..+
T Consensus 9 ~~~GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCCCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEE
T ss_pred eecCCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeee
Confidence 456788899999987 422 332 5688999999999999999965 9999999999999999 999999
Q ss_pred cCeEEEEeecc
Q 007997 416 CGARVLVKPYR 426 (582)
Q Consensus 416 ~Gr~V~Vk~Ak 426 (582)
+||.|+|+.-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998743
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.3e-07 Score=85.60 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCC-CCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECC-HHHHHHHHHhcC--CceEcCeEEEEe
Q 007997 348 VAGSRQIYLTFPAEST-FTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVF-AETVKQILAKGN--PHFVCGARVLVK 423 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~-~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~-~e~A~~Al~~mn--~~~i~Gr~V~Vk 423 (582)
.+...-|||+|| +++ +++++|+++|++||+|..|.++.| +-.|||.|.+ .++|..|+.++| +..|+|..+++.
T Consensus 15 ~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 455668999999 788 999999999999999999999985 4479999999 899999999984 788899888887
Q ss_pred ecc
Q 007997 424 PYR 426 (582)
Q Consensus 424 ~Ak 426 (582)
...
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 544
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.56 E-value=5.3e-08 Score=94.07 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhcCCCEeEEEeecc--------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeeccc
Q 007997 364 FTEQDVSNYFSKFGPVQDVRIPCQ--------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 427 (582)
Q Consensus 364 ~TEedLr~~FsqFG~V~~VrI~~D--------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak~ 427 (582)
-.+++|++.|++||+|.+|.|+.+ +++||+||+|.+.++|++|+..||+..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 357899999999999999999852 5789999999999999999999999999999999999764
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.0013 Score=57.97 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCCCHHHHHHHhhc-----CCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEee
Q 007997 350 GSRQIYLTFPAESTFTEQDVSNYFSK-----FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 424 (582)
Q Consensus 350 ~~rtIyVg~L~~~~~TEedLr~~Fsq-----FG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~ 424 (582)
..++|.|.+| +..+.++.|+-||+. =|+|++|+... +-|+|+|.+++.|+++|++ ..|.|+|.+|.|.+
T Consensus 7 ~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred CccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 4579999999 678999999999987 37999988753 6799999999999999997 78999999999999
Q ss_pred ccccc
Q 007997 425 YREKS 429 (582)
Q Consensus 425 Ak~K~ 429 (582)
+.++.
T Consensus 81 ~~~~~ 85 (104)
T 2dhx_A 81 APPRA 85 (104)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0013 Score=58.73 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcC-----CCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeec
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKF-----GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 425 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqF-----G~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~A 425 (582)
.++|-+-+| +.+++...++.+.+.| |.+++|.+.. -.|=|+|.|.+...|-+|.=+++|..|+||.|+|.-.
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 579999999 8899999999999999 9999999988 4567999999999999998888999999999999765
Q ss_pred cc
Q 007997 426 RE 427 (582)
Q Consensus 426 k~ 427 (582)
.+
T Consensus 98 ~e 99 (117)
T 2l9w_A 98 ND 99 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.23 E-value=0.017 Score=52.10 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcC-eEEEEeeccccc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG-ARVLVKPYREKS 429 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G-r~V~Vk~Ak~K~ 429 (582)
...|.|-+- +.. .-..|-.+|++||+|++...+. ...+-.|+|.+..+|++||.+ |+..|+| -.|-|+++..+.
T Consensus 24 ~~wVtVFGF-p~~-~~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 24 DTWVTVFGF-PQA-SASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGEEEEECC-CGG-GHHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHH
T ss_pred CCEEEEECC-CHH-HHHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHH
Confidence 457777666 232 4577888999999999998754 678999999999999999999 9999985 778888876543
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.0083 Score=52.84 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=62.9
Q ss_pred CCeEEEcCCCCCCCCH----HHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 351 SRQIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TE----edLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
..+|+|++|+..-++. +.++.+|.+|+++......+ +-.=.-|.|.++++|.+|-..|++..+.|++++|..+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4589999994323343 46789999999999887776 54457999999999999999999999999999999988
Q ss_pred cc
Q 007997 427 EK 428 (582)
Q Consensus 427 ~K 428 (582)
+-
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 213
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.0026 Score=52.67 Aligned_cols=25 Identities=32% Similarity=0.906 Sum_probs=22.3
Q ss_pred CCceeccccccccCCCCCCCccccC
Q 007997 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 190 ~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..-.+|.||.+|.|++|.+|+|.|.
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHE 32 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCS
T ss_pred CcceeCHhHccCcCCCCCCCCCccc
Confidence 3457899999999999999999998
No 214
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=95.72 E-value=0.0021 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.998 Sum_probs=22.5
Q ss_pred CceeccccccccCCCCCCCccccC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
...+|.||.+|.|++|++|+|.|.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHE 38 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCS
T ss_pred cCeeCHHHhcCCCCCCCCCCCccc
Confidence 467899999999999999999999
No 215
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.0039 Score=51.07 Aligned_cols=23 Identities=35% Similarity=1.067 Sum_probs=22.0
Q ss_pred ceeccccccccCCCCCCCccccC
Q 007997 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.+.|.+|.+|.|+.|+.|.|.||
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG 42 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHG 42 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSS
T ss_pred cccCcccCcCCCCCCCccCCcCC
Confidence 39999999999999999999999
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.32 E-value=0.014 Score=53.39 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=50.3
Q ss_pred CHHHHHHHhhcCCCEeE-EEeecc-----------------CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 365 TEQDVSNYFSKFGPVQD-VRIPCQ-----------------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 365 TEedLr~~FsqFG~V~~-VrI~~D-----------------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
....|-++|++||.|.+ +.+..+ ....+-.|+|++..+|++||.. |+..|+|..|-|+++.
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECC
Confidence 46677889999999987 322210 1356789999999999999999 9999999999999996
Q ss_pred c
Q 007997 427 E 427 (582)
Q Consensus 427 ~ 427 (582)
+
T Consensus 98 ~ 98 (132)
T 3p3d_A 98 K 98 (132)
T ss_dssp H
T ss_pred H
Confidence 4
No 217
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.32 E-value=0.0056 Score=53.12 Aligned_cols=23 Identities=39% Similarity=1.211 Sum_probs=15.5
Q ss_pred ceeccccccccCCCCCCCccccC
Q 007997 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
-.+|.||.+|.|++|.+|+|.|.
T Consensus 13 ~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 13 RELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccCcccccCcCCCCCCCCCCCC
Confidence 34677776677777777777776
No 218
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.91 E-value=0.0095 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.962 Sum_probs=22.7
Q ss_pred CCCceeccccc-cccCCCCCCCccccC
Q 007997 189 EFPVKVCHYFN-KGFCKHGNNCRYFHG 214 (582)
Q Consensus 189 ~~~~kpC~Yf~-rG~Ck~G~~Cry~Hg 214 (582)
...-++|.||. .|.|+.|..|+|.|+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~ 35 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHG 35 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSS
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCC
Confidence 34568999995 899999999999999
No 219
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.90 E-value=0.0068 Score=49.30 Aligned_cols=23 Identities=39% Similarity=1.092 Sum_probs=21.0
Q ss_pred ceeccccccccCCCCCC-CccccC
Q 007997 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~~-Cry~Hg 214 (582)
..+|.+|.+|.|++|.+ |+|.|.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~ 29 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHP 29 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccC
Confidence 35899999999999995 999998
No 220
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=94.65 E-value=0.014 Score=46.78 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHh
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (582)
..+|.+|++++|++|.||.|+||= .+..|++.|=-. +..|++-|..|-.-|
T Consensus 7 e~Lyp~V~~~~p~~A~KITGMLLE--~d~~ell~ll~~-~e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKITGMLLE--LSPAQLLLLLAS-EDSLRARVDEAMELI 57 (61)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHTT--SCHHHHHHHHHC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchhhhhcc--CCHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 468999999999999999999985 455567777544 455677777776543
No 221
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=94.59 E-value=0.0095 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.769 Sum_probs=21.5
Q ss_pred ceecccc-ccccCCCCCCCccccC
Q 007997 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf-~rG~Ck~G~~Cry~Hg 214 (582)
..+|.|| .+|.|++|..|+|.|.
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~ 59 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHD 59 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCC
Confidence 6789999 5999999999999999
No 222
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=94.50 E-value=0.021 Score=49.25 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=40.6
Q ss_pred HHHHHHhhh--cCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHhc
Q 007997 8 KAVYNRIQK--LEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (582)
Q Consensus 8 ~~v~~riq~--~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (582)
.-+|.+|++ ++||+|.||.|+||= .+..|++.|=- .+.+|++-|.+|-.-|.
T Consensus 26 E~LyplV~~~~~~pelAgKITGMLLE--md~~ElL~LLe-s~e~L~~kV~EA~~vL~ 79 (92)
T 1ifw_A 26 EQLYKKVSAKTSNEEAAGKITGMILD--LPPQEVFPLLE-SDELFEQHYKEASAAYE 79 (92)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHTT--SCHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccchhhHhHhc--CCHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 458999999 999999999999984 56666777744 45567777887766553
No 223
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.45 E-value=0.0068 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.898 Sum_probs=0.0
Q ss_pred Cceecc-ccccccCCCCCCCccccC
Q 007997 191 PVKVCH-YFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~-Yf~rG~Ck~G~~Cry~Hg 214 (582)
..++|. |+..|+|++|..|+|.|+
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~ 73 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHN 73 (77)
T ss_dssp -------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCC
Confidence 357897 556899999999999999
No 224
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=94.37 E-value=0.011 Score=48.01 Aligned_cols=23 Identities=43% Similarity=0.997 Sum_probs=21.4
Q ss_pred CceeccccccccCCCCCCCccccC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..-.|.+|.+|.|.+| +|+|+|.
T Consensus 41 ~~~vC~~flkG~C~r~-~C~y~H~ 63 (70)
T 3d2q_A 41 TVTVCMDYIKGRCSRE-KCKYFHP 63 (70)
T ss_dssp EEEBCHHHHTTCCCCT-TCCSBCC
T ss_pred cceeccccCcCCCCCC-CcCeeCC
Confidence 4678999999999999 9999998
No 225
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.11 E-value=0.017 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.951 Sum_probs=21.1
Q ss_pred ceeccccccccCCCCC-CCccccC
Q 007997 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~-~Cry~Hg 214 (582)
.-+|.+|.+|.|+||. .|+|.|-
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~ 32 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHP 32 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCC
T ss_pred chhcHHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999995 9999999
No 226
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.55 E-value=0.027 Score=61.26 Aligned_cols=56 Identities=18% Similarity=0.387 Sum_probs=41.8
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHh
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK 409 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~ 409 (582)
.|.|||.. +...++.+|.+||++||+|.++..-.+ ..-|+.|+|.+.+++.++++.
T Consensus 53 ~rsv~v~~--~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIHC--PEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEEE--CCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEEc--CCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 46899985 467999999999999999999977653 346999999999999988765
No 227
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.52 E-value=0.018 Score=50.08 Aligned_cols=24 Identities=42% Similarity=0.892 Sum_probs=22.1
Q ss_pred CCceeccccccccCCCCCCCccccC
Q 007997 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 190 ~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.....|.||.||.|.+| +|+|+|.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~ 77 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHP 77 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred CccccchhhccCCCCCC-CcCccCC
Confidence 45778999999999999 9999999
No 228
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=93.21 E-value=0.025 Score=48.07 Aligned_cols=52 Identities=27% Similarity=0.438 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHhc
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (582)
.-+|.+|++++||+|.||.|+||=- +..|++.|=-.|| .|++-|.+|-.-|.
T Consensus 28 E~LyplV~~~~p~~AgKITGMLLEm--d~~Ell~Lles~e-~L~~kv~EA~~vL~ 79 (85)
T 2dyd_A 28 ENLYPLVDQLEHDQAAKVTGMLLEM--DQTEVLHLLESPD-ALKAKVAEAMEVLR 79 (85)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHH--CHHHHHHHTTCSH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccchhhhhhhcC--CHHHHHHHHcCHH-HHHHHHHHHHHHHH
Confidence 4689999999999999999999965 4566777755554 56777888776654
No 229
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=93.20 E-value=0.038 Score=51.24 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=41.6
Q ss_pred HHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHhcC
Q 007997 9 AVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLGL 63 (582)
Q Consensus 9 ~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~~ 63 (582)
.+|-+|++++||+|.||.|+||=- +..|++.|=-.| .+|++.|.+|-.-|--
T Consensus 73 ~LyplV~~~~p~~A~KITGMLLEm--d~~ElL~LLes~-e~L~~kV~EA~~vL~~ 124 (144)
T 1g9l_A 73 RLFPLIQAMHPTLAGKITGMLLEI--DNSELLHMLESP-ESLRSKVDEAVAVLQA 124 (144)
T ss_dssp SSHHHHHHHTTSCCSSHHHHTTTS--SSHHHHHHHHCT-THHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccchhhhhhccC--CHHHHHHHHcCH-HHHHHHHHHHHHHHHH
Confidence 368999999999999999999954 555788885544 5678888888887755
No 230
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=93.07 E-value=0.034 Score=47.26 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=40.7
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHhc
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKLG 62 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l~ 62 (582)
.-+|.+|++++|+.|.||.|+||=- +..|++.|= -.+.+|++-|.+|-.-|.
T Consensus 29 E~LyplV~~~~p~~AgKITGMLLEm--d~~ElL~Ll-e~~e~L~~kV~EA~~vL~ 80 (85)
T 1nmr_A 29 ERLYNHIVAINPAAAAKVTGMLLEM--DNGEILNLL-DTPGLLDAKVQEALEVLN 80 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCSCT--HHHHHHTTC-CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccccchhhHhHhcC--CHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999954 455677774 455677888888876654
No 231
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.89 E-value=0.045 Score=49.33 Aligned_cols=42 Identities=7% Similarity=-0.100 Sum_probs=30.4
Q ss_pred EEEeecc--CCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEE
Q 007997 381 DVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 422 (582)
Q Consensus 381 ~VrI~~D--~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~V 422 (582)
.+.|+++ +++|||||+|.+.++|++|++.+++....+..+.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~ 45 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY 45 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccc
Confidence 3556554 78999999999999999999887653333333333
No 232
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=92.69 E-value=0.056 Score=46.26 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCCchhhhhhhhhcccCCccchhhhccCChHHHHHHHHHHHHHh
Q 007997 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (582)
Q Consensus 8 ~~v~~riq~~~pe~a~kI~g~ll~qd~~e~emirla~gpd~~~~~~i~~ak~~l 61 (582)
..+|.+|++++|+.|.||.|+||=- +..|++.|== .+..|++-|..|-.-|
T Consensus 26 E~Lyp~V~~~~p~~A~KITGMLLEm--d~~Ell~lle-~~e~L~~kV~EA~~vL 76 (88)
T 3kuj_A 26 ERLFPLIQAMHPTLAGKITGMLLEI--DNSELLHMLE-SPESLRSKVDEAVAVL 76 (88)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHHTTS--CHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhhCCCccchhhhHhhcC--CHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 3689999999999999999999954 4556777733 3566787788776655
No 233
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.66 E-value=0.031 Score=47.16 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=21.6
Q ss_pred CceeccccccccCCCCCCCccccC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.+-.|.+|.||.|.|| +|+|+|.
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~ 64 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHP 64 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCC
T ss_pred ceeehhHhhhccccCC-CcceeCC
Confidence 4788999999999998 9999999
No 234
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.64 E-value=0.029 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.995 Sum_probs=21.5
Q ss_pred ceeccccccccCCCCC-CCccccC
Q 007997 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~-~Cry~Hg 214 (582)
.-+|.+|.||.|++|. .|+|.|-
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~ 40 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHP 40 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCC
T ss_pred hhhchHHhcCCCCCCCCCCCCcCC
Confidence 4589999999999998 9999998
No 235
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.55 E-value=0.014 Score=50.65 Aligned_cols=23 Identities=39% Similarity=1.079 Sum_probs=21.6
Q ss_pred ceeccccccccCCCCC-CCccccC
Q 007997 192 VKVCHYFNKGFCKHGN-NCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~-~Cry~Hg 214 (582)
..+|.||.||-|++|. .|+|.|.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~ 43 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHP 43 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCC
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCC
Confidence 5789999999999999 7999999
No 236
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.05 E-value=0.22 Score=43.59 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcC
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 411 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn 411 (582)
+-++|+++ .++...||..+|+.|| -..|+.+-| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP--~ewKt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFP--KEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECC--TTCCHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCC--hhhhhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 35777665 5668899999999999 556666754 369999999999999999754
No 237
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.93 E-value=0.056 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.883 Sum_probs=20.3
Q ss_pred ceecccccc-ccCCCCCCCccccC
Q 007997 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
..+|.||.+ |.|. |..|+|.|.
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~ 60 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHI 60 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCC
T ss_pred CCCCcccCCCCccC-CCCeeccCC
Confidence 457999999 9999 899999999
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.93 E-value=0.38 Score=42.02 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhc
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 410 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~m 410 (582)
.+-++|+++ .++...||.++|+.|| -..|+.+-| .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l~FP--~ewKt~DI~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHVTFP--KEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEEECC--TTCCHHHHHHHHTTTC-SCCCEEEET---TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEEeCC--hhhhhHHHHHHhhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhc
Confidence 457777665 5678899999999999 445666654 46999999999999999875
No 239
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.23 E-value=0.85 Score=39.00 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=53.7
Q ss_pred CeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 352 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 352 rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
.||.|.+| +.++||+++.+..+.+..+...+...+ ..-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 48999999 889999999999999988776665553 123569999999999999999988887744
No 240
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=90.19 E-value=0.063 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.905 Sum_probs=20.7
Q ss_pred ceecccccc-ccCCCCCCCccccC
Q 007997 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~r-G~Ck~G~~Cry~Hg 214 (582)
..+|.||.+ |.|.+ ..|+|.|.
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~ 66 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHI 66 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCC
T ss_pred CCcccccCCCCCCCC-CCeeccCC
Confidence 568999999 99999 99999998
No 241
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.34 E-value=0.13 Score=46.01 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=38.1
Q ss_pred CCCceEEEEECCHHHHHHHHHhc-CCceEcCeEEEEeecccccc
Q 007997 388 QKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYREKSR 430 (582)
Q Consensus 388 ~sRGfGFVtF~~~e~A~~Al~~m-n~~~i~Gr~V~Vk~Ak~K~k 430 (582)
+.+|+++|+|.+.++|++|++.+ |+..++| .+.|.++..+..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~ 53 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFT 53 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccc
Confidence 67999999999999999999999 9999999 999998876543
No 242
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=88.99 E-value=0.1 Score=44.60 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=21.4
Q ss_pred CceeccccccccCCCCCCCccccC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..-.|.+|.||-|.|+ +|+|+|.
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~ 72 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHP 72 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCC
T ss_pred ceeeehhhhhCcCCCC-CcceecC
Confidence 4788999999999998 9999999
No 243
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=75.91 E-value=0.61 Score=35.80 Aligned_cols=25 Identities=32% Similarity=0.848 Sum_probs=21.3
Q ss_pred CCceecccc-ccccCCCCCCCccccC
Q 007997 190 FPVKVCHYF-NKGFCKHGNNCRYFHG 214 (582)
Q Consensus 190 ~~~kpC~Yf-~rG~Ck~G~~Cry~Hg 214 (582)
....+|-=| +.|+|.+|-.|.+.|-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHD 43 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHD 43 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred cccchhhhccccccCCCCCCCCcccc
Confidence 456788777 5699999999999998
No 244
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=72.21 E-value=0.85 Score=39.11 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCCCCCCHHH
Q 007997 348 VAGSRQIYLTFPAESTFTEQD 368 (582)
Q Consensus 348 ~~~~rtIyVg~L~~~~~TEed 368 (582)
.....+|||+|| +.++|++.
T Consensus 94 ~~~~~~lyv~Nl-~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNF-GPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred cCCCCceEeCCC-CCCccccc
Confidence 344568999999 77788764
No 245
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=70.72 E-value=6.2 Score=34.14 Aligned_cols=66 Identities=5% Similarity=0.030 Sum_probs=47.2
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeecc------CCCceEEEEECCHHHHHHHHHhcCCceEcC
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCG 417 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D------~sRGfGFVtF~~~e~A~~Al~~mn~~~i~G 417 (582)
+-||.|..| +..+||+++.+.++.+=++.......+ ..-.-|+|.|.+.+++..-.+..+++.+-+
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 459999999 789999998777666544322221111 112458999999999999999988877743
No 246
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=68.18 E-value=1.1 Score=44.28 Aligned_cols=25 Identities=40% Similarity=0.820 Sum_probs=0.0
Q ss_pred CCCCceeccccccccCCCCCCCccccC
Q 007997 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 188 ~~~~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
++..+.||-|-.| |.-|+.|+|.|-
T Consensus 188 ~~~~~~~~~~~~~--~~~~~~~~~~~~ 212 (223)
T 3v33_A 188 LEHRKQPCPYGRK--CTYGIKCRFFHP 212 (223)
T ss_dssp ---------------------------
T ss_pred cccCCCCCCCCcc--cccCCcceecCC
Confidence 4667899999765 999999999997
No 247
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=60.05 E-value=2.8 Score=41.52 Aligned_cols=23 Identities=30% Similarity=0.714 Sum_probs=21.8
Q ss_pred CceeccccccccCCCCCCCccccC
Q 007997 191 PVKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 191 ~~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
-.++|-||-+|-|+. .+|+-.|.
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~ 196 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHN 196 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCC
T ss_pred ceeccchhhcCCcCC-CCccCccC
Confidence 489999999999999 89999999
No 248
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.50 E-value=17 Score=39.62 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCCCHHHHHHHhhcCCCEeEEEeeccCCCceEEEEECCHHHHHHHHHhcCC
Q 007997 351 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP 412 (582)
Q Consensus 351 ~rtIyVg~L~~~~~TEedLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~ 412 (582)
...++|++. ..+...+|.+.|+.||. .+|+.+ ....+||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~f~--~~~~~~~i~~~fs~fg~-v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVTFP--KEWKTSDLYQLFSAFGN-IQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEECC--TTCCHHHHHHHGGGGCC-CEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEeCC--CCCCHHHHHHHHHhcCC-EEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 458888855 45578999999999995 466655 356799999999999999998753
No 249
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=36.74 E-value=11 Score=37.43 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.3
Q ss_pred CCceeccccccccC----CCCCCCccccC
Q 007997 190 FPVKVCHYFNKGFC----KHGNNCRYFHG 214 (582)
Q Consensus 190 ~~~kpC~Yf~rG~C----k~G~~Cry~Hg 214 (582)
-.++.|.||--|-| ..|+.|+|.|-
T Consensus 87 ~~LHLCK~~l~G~C~~~~~~~~~Ck~SHd 115 (229)
T 3u9g_A 87 DSLHLCKLNLLGRCHYAQSQRNLCKYSHD 115 (229)
T ss_dssp CSBCCCHHHHTTCCGGGTCCSSCCSSCSC
T ss_pred cceeechhhhcCcCCcccCCCCCcccccc
Confidence 46899999999999 46799999998
No 250
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=29.41 E-value=13 Score=28.19 Aligned_cols=21 Identities=33% Similarity=0.893 Sum_probs=17.8
Q ss_pred eeccccccccCCCCCCCccccC
Q 007997 193 KVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 193 kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.||.=-.++||.|| .|+|.++
T Consensus 10 ~~C~~~~~~yC~nG-~C~~i~~ 30 (50)
T 2rnl_A 10 NPCNAEFQNFCIHG-ECKYIEH 30 (50)
T ss_dssp CTTTTTGGGTCSSS-EEEEETT
T ss_pred cccCchhhCcCCCC-EEEEecC
Confidence 57876667999999 9999887
No 251
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=27.72 E-value=14 Score=28.01 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=17.5
Q ss_pred ceeccccccccCCCCCCCccccC
Q 007997 192 VKVCHYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 192 ~kpC~Yf~rG~Ck~G~~Cry~Hg 214 (582)
..||.=-.++||-|| .|.|.+.
T Consensus 5 ~~~C~~~~~~yC~nG-~C~~~~~ 26 (50)
T 3e50_C 5 FNDCPDSHTQFCFHG-TCRFLVQ 26 (50)
T ss_pred ccccChhhcCcccCC-EEeeccC
Confidence 356766668999999 9999776
No 252
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=24.95 E-value=13 Score=24.22 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.8
Q ss_pred chhhhhhhhhcccC
Q 007997 21 NVSKIIGYLLLQDH 34 (582)
Q Consensus 21 ~a~kI~g~ll~qd~ 34 (582)
++.||-+.|||||+
T Consensus 1 ~VGKiYAallI~d~ 14 (23)
T 3dve_B 1 HMGKVYAALMIFDF 14 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 46899999999975
No 253
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=23.30 E-value=14 Score=23.99 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=12.2
Q ss_pred chhhhhhhhhcccC
Q 007997 21 NVSKIIGYLLLQDH 34 (582)
Q Consensus 21 ~a~kI~g~ll~qd~ 34 (582)
++.||-+.|||||+
T Consensus 2 ~VGKiYA~llI~d~ 15 (23)
T 3dvk_B 2 HMGKIYAAMMIMDY 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67899999999985
No 254
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.89 E-value=1.3e+02 Score=23.58 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=42.1
Q ss_pred eEEEcCCCCCCCCHHHHHHHhhcCCC-----EeEEEeeccCCCceEEEEECCHHHHHHHHHhcCCceEcCeEEEEeecc
Q 007997 353 QIYLTFPAESTFTEQDVSNYFSKFGP-----VQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 426 (582)
Q Consensus 353 tIyVg~L~~~~~TEedLr~~FsqFG~-----V~~VrI~~D~sRGfGFVtF~~~e~A~~Al~~mn~~~i~Gr~V~Vk~Ak 426 (582)
++||..=....++..+|-.++..-+. |-.|+| .-.|.||.-... .+..+++.+++..++|+.+.|..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i----~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI----MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE----CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE----eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 45554332345666777777765443 455666 345899988654 4778888889999999999998764
No 255
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=21.64 E-value=11 Score=26.92 Aligned_cols=18 Identities=28% Similarity=0.853 Sum_probs=14.8
Q ss_pred cccccccCCCCCCCccccC
Q 007997 196 HYFNKGFCKHGNNCRYFHG 214 (582)
Q Consensus 196 ~Yf~rG~Ck~G~~Cry~Hg 214 (582)
.||.|.||. |+.|+-++-
T Consensus 17 iyFRRAyCd-gs~C~CVf~ 34 (36)
T 1mm0_A 17 IYFRRAFCD-RSQCKCVFV 34 (36)
T ss_dssp TTEEEEEEE-TTEEEEEEC
T ss_pred eeeeeeeec-CCeeEEEec
Confidence 599999998 799986653
No 256
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.33 E-value=20 Score=32.77 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=17.6
Q ss_pred HHHHHHhhcCCCEeEEEeeccCCCceEEEEEC
Q 007997 367 QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFV 398 (582)
Q Consensus 367 edLr~~FsqFG~V~~VrI~~D~sRGfGFVtF~ 398 (582)
+|+..+|...|.|.-.. ..||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 45556677777766543 37999999976
Done!